2025-08-24
ENA first public
ERC000050
ENA-CHECKLIST
SAMEA114296835
External Id
Shenzhen Puensum Genetech Institute
INSDC center name
2023-08-23T08:35:47Z
INSDC last update
public
INSDC status
ERS16285942
SRA accession
M42E
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes;3.11.0;kmer set 21,41,61,81,101,121,141
assembly software
metabat2 -m 2000 -s 200000 --saveCls --unbinned --seed 2023
binning parameters
metabat2
binning software
feces
broad-scale environmental context
2020
collection date
96.8
%
completeness score
CheckM
completeness software
0
%
contamination score
p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter;s__NA
description
feces
environmental medium
China
geographic location (country and/or sea)
31
DD
geographic location (latitude)
121
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut microbiota
isolation_source
feces
local environmental context
human gut metagenome
metagenomic source
Methanobrevibacter sp.
organism
PRJEB65345
project name
SAMEA114293355
sample derived from
Methanobrevibacter sp.
scientific_name
Illumina NovaSeq 6000
sequencing method
M42E
title