2025-08-30
ENA first public
ERC000011
ENA-CHECKLIST
PNUH
INSDC center name
public
INSDC status
ERS25491893
SRA accession
E-MTAB-15494:B153
Submitter Id
77
year
age
ArrayExpress
broker name
not collected
collection date
human
common name
Protocols: We enrolled 143 patients at Pusan National University Hospital between May 2021 and December 2023, including 56 patients diagnosed with BTCs and 87 with BBDs. A total of 84 patients were excluded because of their unsuitability for sequencing analysis. Clinical data and bile samples were collected during surgery or endoscopic retrograde cholangiopancreatography (ERCP). All bile samples obtained during ERCP were collected using a new catheter prior to the endoscopic sphincterotomy (EST) after guide wire-assisted cannulation only in cases in which the ampullary orifice was patented. Samples were aspirated using syringe suction before the administration of contrast agents. A minimum of 5 mL of bile was collected, and efforts were made to collect 10 mL or more whenever feasible. Fresh bile samples were immediately stored at -80°C after collection, 1 mL aliquots were divided into separate tubes for subsequent analysis. (IRB approval no. 2105-004-102) Frozen 1 mL bile juice sample were thawed, and microbiome DNA was extracted using the QIAamp DNA Microbiome Kit according to the manufacturer's instructions. The extracted microbiome DNA was eluted in 50 µL of the kit’s elution buffer and stored at -20°C until further analysis. The V3–V4 regions of the 16S rRNA gene were PCR-amplified using barcoded universal primers.
description
adult
developmental stage
common bile duct stone
disease
not collected
geographic location (country and/or sea)
B153
individual
not applicable
isolate
Homo sapiens
organism
Homo sapiens
organism
gall bladder
organism part
Homo sapiens
scientific_name
male
sex
B153
title