2025-08-31
ENA first public
ERC000013
ENA-CHECKLIST
SAMEA114318450
External Id
3
Flow Cell
Centre for Genomic Regulation
INSDC center name
2023-11-14T12:15:04Z
INSDC last update
public
INSDC status
62.5
Initial concentration Picogreen (ng/ul)
ERS16307563
SRA accession
sample_F0007D611E5
Submitter Id
A10
Wells
FALSE
bad_rat
07109AAE
barcode
Batch24
batch
not applicable
batchnumber
urban biome [ENVO:01000249]
broad-scale environmental context
3
cage_density
box3
ccc_box
2018-06-06
collection date
crf_MI_box11
crf_MI_box
HSF02647
dam
2018-06-05 18:00:00
datetime_fasting_started
2018-06-06 13:55:00
datetime_glucose_measured_at_dissection
Fecal metagenome of NIH-Heterogeneous Stock (HS) rat 0007D611E5
description
2018-03-06
dob
2018-03-27
dow
LM
earpunchlcn
840
m
elevation
fecal material [ENVO_00002003]
environmental medium
FALSE
failed_lib
82
generation
TRUE
genotyped
USA
geographic location (country and/or sea)
42.28
DD
geographic location (latitude)
-83.74
DD
geographic location (longitude)
97
mg_dl
glucose_at_dissection
109
mg_dl
glucose_at_weaning
92.84097
days
host age
gastro-intestinal system [UBERON:0005409]
host body habitat
Lumen of intestine [fma:fma14586]|Intestinal mucosa [fma:fma15695]
host body product
Feces [fma:fma64183]
host body site
brownhood
host color
rat
host common name
40.5
cm
host length
adult
host life stage
Rattus norvegicus
host scientific name
male
host sex
0007D611E5
host subject id
10116
host taxid
290
g
host total mass
YES
in_16s_prep
22.5
cm
length_wo_tail
43.3
library molarity (nM)
27531476
library reads sequenced
615
library size (bp)
5
litternumber
6
littersize
large intestine [UBERON:0000059]
local environmental context
NO
metabolomicsed
0007D611E5
name_round8_genotypes
Empty well before DNA extraction
negative control type
box3
novelty_seeking_box
rat gut metagenome
organism
box11
pavca_MI_box
AGATAGGCGA-TATGCTTGCG
pcr primers
MI
phenotyping_center
09
plate
ZymoBiomics Gut Microbiome Standard, ZYMO Research catalogue #D331
positive control type
Deep shotgun sequencing of the cecal and fecal microbiomes of outbred Heterogeneous Stock rats
project name
11479.0007D611E5
sample_name_16S
rat gut metagenome
scientific_name
YES
sequenced_16s
NO
sequenced_mg
OBI:0002630
sequencing method
2018-04-17
shipment_to_phenotyping_center_date
HSM02642
sire
MI
study
20.1833333333333
time_elapsed_removeFood_dissection
19.9166666666667
time_elapsed_removeFood_measure
F
tissue_type
Fecal sample of NIH-Heterogeneous Stock (HS) rat 0007D611E5
title
FALSE
unknown_rat
18-102-826
weaning_cagecard
3-B3
weaning_cagelocation
630
weaning_roomnumber
MI-B24-1
weaning_shippingbox
F
weaning_suite
45
g
weight_at_weaning