Yes
16S recovered
Infernal: 1.1.5
16S recovery software
2025-09-22
ENA first public
ERC000050
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
minimap2: 2.29-r1283; coverm: 0.7.0
MAG coverage software
ERS26907067
SRA accession
01d20433-eccd-459e-8ead-fb44c47c68e1
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metamdbg: 1.2
assembly software
graph; coverage; hic-mapping
binning parameters
dastool: 1.1.7; maxbin2: 2.2.7; bin3c: 0.3.3; metabat2: 2.17; metator: 1.3.10
binning software
aquatic biome
broad-scale environmental context
RODRIGO COSTA
collected_by
UNIVERSITY OF LISBON AND CENTRE OF MARINE SCIENCES
collecting institution
2021-06-08
collection date
94.38
%
completeness score
checkm2: 1.1.0
completeness software
2.02
%
contamination score
16
m
depth
adult sponge tissue
environmental medium
Portugal
geographic location (country and/or sea)
36.98
DD
geographic location (latitude)
-7.99
DD
geographic location (longitude)
Pedra da Greta
geographic location (region and locality)
Coastal Seawater
habitat
adult
host life stage
Phorbas fictitius
host scientific name
not applicable
host sex
748450
host taxid
JORGE GONÃ‡ALVES
identified_by
CENTRE OF MARINE SCIENCES
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Phorbas fictitius
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
23
number of standard tRNAs extracted
uncultured Myxococcia bacterium
organism
WHOLE ORGANISM
organism part
ASG
project name
Heterotrophic Microbiome (Mostly)
relationship
SAMEA120246019
sample derived from
SAMEA9611629
sample symbiont of
uncultured Myxococcia bacterium
scientific_name
Illumina NovaSeq; Illumina NovaSeqX; Illumina NovaSeqX; PacBio Revio; PacBio Revio
sequencing method
GHC0000123
specimen_id
NOT PROVIDED
specimen_voucher
tRNAscan-SE: 2.0.12
tRNA extraction software
GTDB-Tk: 2.5.2; GTDB DB: r226
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
01d20433-eccd-459e-8ead-fb44c47c68e1-asg-odPhoFict1_metamdbg_dastool_11
title
odPhoFict1.Myxococcia_1
tolid