Yes
16S recovered
Infernal: 1.1.5
16S recovery software
2025-09-22
ENA first public
ERC000047
ENA-CHECKLIST
Geomar Helmholtz Centre
GAL
NOT PROVIDED
GAL_sample_id
Tree of Life Programme
INSDC center name
public
INSDC status
minimap2: 2.29-r1283; coverm: 0.7.0
MAG coverage software
ERS26907084
SRA accession
265d9533-ff5d-4a24-bdaa-876dbdd94031
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metamdbg: 1.2
assembly software
graph; coverage; hic-mapping
binning parameters
dastool: 1.1.7; maxbin2: 2.2.7; bin3c: 0.3.3; metabat2: 2.17; metator: 1.3.10
binning software
aquatic biome
broad-scale environmental context
RODRIGO COSTA
collected_by
UNIVERSITY OF LISBON AND CENTRE OF MARINE SCIENCES
collecting institution
2021-06-08
collection date
62.36
%
completeness score
checkm2: 1.1.0
completeness software
3.73
%
contamination score
16
m
depth
adult sponge tissue
environmental medium
Portugal
geographic location (country and/or sea)
36.98
DD
geographic location (latitude)
-7.99
DD
geographic location (longitude)
Pedra da Greta
geographic location (region and locality)
Coastal Seawater
habitat
adult
host life stage
Phorbas fictitius
host scientific name
not applicable
host sex
748450
host taxid
JORGE GONÃ‡ALVES
identified_by
CENTRE OF MARINE SCIENCES
identifier_affiliation
metagenome-assembled genome
investigation type
Sponge: Phorbas fictitius
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
20
number of standard tRNAs extracted
Candidatus Pelagibacter sp.
organism
WHOLE ORGANISM
organism part
ASG
project name
Heterotrophic Microbiome (Mostly)
relationship
SAMEA120246019
sample derived from
SAMEA9611629
sample symbiont of
Candidatus Pelagibacter sp.
scientific_name
Illumina NovaSeq; Illumina NovaSeqX; Illumina NovaSeqX; PacBio Revio; PacBio Revio
sequencing method
GHC0000123
specimen_id
NOT PROVIDED
specimen_voucher
tRNAscan-SE: 2.0.12
tRNA extraction software
GTDB-Tk: 2.5.2; GTDB DB: r226
taxonomic classification
ani_screen
taxonomic identity marker
265d9533-ff5d-4a24-bdaa-876dbdd94031-asg-odPhoFict1_metamdbg_dastool_26
title
odPhoFict1.Candidatus_Pelagibacter_sp_1
tolid