Yes
16S recovered
Infernal: 1.1.5
16S recovery software
2025-09-23
ENA first public
ERC000050
ENA-CHECKLIST
Tree of Life Programme
INSDC center name
public
INSDC status
minimap2: 2.29-r1283; coverm: 0.7.0
MAG coverage software
ERS26910663
SRA accession
b31f8aca-6713-4340-aa20-c7965b6880ef
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metamdbg: 1.2
assembly software
graph; coverage; hic-mapping
binning parameters
metabat2: 2.17; dastool: 1.1.7; maxbin2: 2.2.7; metator: 1.3.10; bin3c: 0.3.3
binning software
aquatic biome
broad-scale environmental context
2024-02-29
collection date
95.24
%
completeness score
checkm2: 1.1.0
completeness software
0.84
%
contamination score
14.3
m
depth
adult sponge tissue
environmental medium
USA
geographic location (country and/or sea)
26.16
DD
geographic location (latitude)
-80.08
DD
geographic location (longitude)
Amphimedon compressa
host scientific name
178514
host taxid
metagenome-assembled genome
investigation type
Sponge: Amphimedon compressa
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
23
number of standard tRNAs extracted
Oceanospirillales bacterium
organism
ASG
project name
SAMEA120249617
sample derived from
Oceanospirillales bacterium
scientific_name
Illumina NovaSeqX; Illumina NovaSeqX; PacBio Revio; Illumina NovaSeqX
sequencing method
tRNAscan-SE: 2.0.12
tRNA extraction software
GTDB-Tk: 2.5.2; GTDB DB: r226
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
b31f8aca-6713-4340-aa20-c7965b6880ef-asg-odAmpComp2_metamdbg_dastool_2
title
odAmpComp2.Oceanospirillales_1
tolid