2025-10-09
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS26976122
SRA accession
DRR247354_binner123_Refined_23
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.0.0
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
missing: third party data
collection date
99.55
%
completeness score
CheckM2_v1.0.1
completeness software
0.01
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run DRR247354 of study DRP006589.
description
saliva
environmental medium
not provided
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human oral metagenome
isolation_source
oral cavity
local environmental context
human oral metagenome
metagenomic source
uncultured Peptostreptococcus sp.
organism
An additional experiment was also conducted in which two saliva samples from three out of the four individuals were taken and stored using either OMNIgene ORAL or an alternative kit (RNAlater), followed by the same DNA extraction, library construction. The libraries were equally mixed and subjected to a run of multiplex genome sequencing with the Illumina HiSeq 2 ? 150 bp paired-end run protocol. The data after the quality control and removal of human reads are deposited at DDBJ.
project name
SAMD00248617
sample derived from
uncultured Peptostreptococcus sp.
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: DRR247354_binner123_Refined_23
title