2025-10-09
ENA first public
ERC000011
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS26975388
SRA accession
sam_ECOMINE_C30
Submitter Id
18S rRNA - V4 region
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
adapters
SeBiMER
broker name
IFREMER
collecting institution
2022-04-22
collection date
sediment metagenome
common name
lagoon
environment (biome)
marine coral reef biome
environment (feature)
sediment
environment (material)
none
environmental package
Yes
environmental_sample
New Caledonia
geographic location (country and/or sea)
1.84
m
geographic location (depth)
166.23425
DD
geographic location (latitude)
21.597
DD
geographic location (longitude)
Thio
geographic location (region and locality)
eukaryote
investigation type
Sediment core of New Caledonia lagoon
isolation_source
V4f-PlaGe : 5'-CCAGCASCYGCGGTAATTCC-3' ; V4r-PlaGe : 5'-ACTTTCGTTCTTGATYRA-3'
multiplex identifiers
sediment metagenome
organism
fastq
pcr primers
ECOMINE
project name
Sediment sample from the part C of the core, at 30cm
sample_description
C30
sample_name
sediment metagenome
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
18S rRNA
target gene
V4
target subfragment
C30
title