2025-10-10
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS26980016
SRA accession
SRR5898989_binner23_Refined_3
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.2.0
binning software
human
broad-scale environmental context
EBI-EMG
broker name
2016-07-20
collection date
95.51
%
completeness score
CheckM2_v1.0.1
completeness software
0.72
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR5898989 of study SRP114847.
description
intestine
environmental medium
India
geographic location (country and/or sea)
12.51000000
DD
geographic location (latitude)
74.98000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
digestive system
local environmental context
human gut metagenome
metagenomic source
uncultured Oscillospiraceae bacterium
organism
Through Next Generation Sequencing we delineated the composition and functional detail of gut microbiota in various world populations. The relationship of the gut microbiota to health and disease is one of the primary goals of human microbiome studies. The microbiota of the Indian population is of particular interest to researchers because India encompasses a unique diversity in environmental conditions, diet and ethnic geographical population. In this study, we conduct 16s rRNA sequencing, shotgun metagenomic and metabolomics analysis of 110 healthy Indian subjects, which reveals novel gut microbial community structures
project name
SAMN07449050
sample derived from
uncultured Oscillospiraceae bacterium
scientific_name
NextSeq 500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR5898989_binner23_Refined_3
title