2025-10-11
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS26985683
SRA accession
SRR31188377_concoct_32
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.2.0
binning software
human digestive system
broad-scale environmental context
EBI-EMG
broker name
2017/2022
collection date
93.1
%
completeness score
CheckM2_v1.0.1
completeness software
2.73
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR31188377 of study SRP541447.
description
oral sample
environmental medium
USA
geographic location (country and/or sea)
29.69000000
DD
geographic location (latitude)
-95.39000000
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human oral metagenome
isolation_source
oral cavity
local environmental context
human oral metagenome
metagenomic source
Candidatus [Bacteroides] periocalifornicus
organism
This project studies the diversity and characteristics of the oral microbiome influenced by race and ethnicity.
project name
SAMN43928043
sample derived from
Candidatus [Bacteroides] periocalifornicus
scientific_name
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR31188377_concoct_32
title