2025-10-30
ENA first public
ERC000013
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS27122455
SRA accession
sam_symbiotox_CS-M13
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
adapters
marine neritic benthic zone biome [ENVO:01000025]
broad-scale environmental context
SeBiMER
broker name
Ifremer, Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03
collecting institution
2023-02-06
collection date
Anthony Bertucci
collector name
Pacific oyster
common name
mantle [UBERON:0006575]
environmental medium
host-associated
environmental package
yes
environmental_sample
France
geographic location (country and/or sea)
0.00
m
geographic location (depth)
not applicable
m
geographic location (elevation)
47.01233333
DD
geographic location (latitude)
-2.02297222
DD
geographic location (longitude)
western part of Mont-Saint-Michel bay, south of Cancale
geographic location (region and locality)
bacteria_archaea
investigation type
Pacific oyster mantle
isolation_source
bay [ENVO:00000032]|intertidal zone [ENVO:00000316]|tidal mudflat [ENVO:00000241]|aquaculture farm [ENVO:03600074]
local environmental context
TATCAT
multiplex identifiers
Magallana gigas
organism
5-CCTACGGGNGGCWGCAG-3' ; 5-GACTACHVGGGTATCTAATCC-3
pcr primers
symbiotox
project name
16S rRNA (V3-V4) sequencing of the mantle microbiota of the Pacific oyster (Crassostrea gigas) individual 13, collected in the western part of Mont-Saint-Michel bay (France), south of Cancale in February 2023
sample_description
CS-M13
sample_name
Magallana gigas
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V3-V4
target subfragment
Pacific oyster mantle microbiota, South of Cancale, 16S rRNA (V3-V4), individual 13
title