2025-10-30
ENA first public
ERC000013
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS27122632
SRA accession
sam_symbiotox_T-M12
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
adapters
mediterranean biome [ENVO:01001833]|aquatic biome [ENVO:00002030]
broad-scale environmental context
SeBiMER
broker name
Ifremer, Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03
collecting institution
2023-01-23
collection date
Anthony Bertucci
collector name
Pacific oyster
common name
mantle [UBERON:0006575]
environmental medium
host-associated
environmental package
yes
environmental_sample
France
geographic location (country and/or sea)
2.00
m
geographic location (depth)
not applicable
m
geographic location (elevation)
43.43486111
DD
geographic location (latitude)
3.66411111
DD
geographic location (longitude)
Thau lagoon, Bouzigues site
geographic location (region and locality)
bacteria_archaea
investigation type
Pacific oyster mantle
isolation_source
lagoon [ENVO:00000038]|aquaculture farm [ENVO:03600074]
local environmental context
ACCCCC
multiplex identifiers
Magallana gigas
organism
5-CCTACGGGNGGCWGCAG-3' ; 5-GACTACHVGGGTATCTAATCC-3
pcr primers
symbiotox
project name
16S rRNA (V3-V4) sequencing of the mantle microbiota of the Pacific oyster (Crassostrea gigas) individual 12, collected in the Thau lagoon (France) next to oyster tables, at the Bouzigues station in January 2023
sample_description
T-M12
sample_name
Magallana gigas
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V3-V4
target subfragment
Pacific oyster mantle microbiota, Thau lagoon, 16S rRNA (V3-V4), individual 12
title