2025-10-30
ENA first public
ERC000013
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS27122500
SRA accession
sam_symbiotox_LC-G19
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
adapters
marine neritic benthic zone biome [ENVO:01000025]
broad-scale environmental context
SeBiMER
broker name
Ifremer, Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03
collecting institution
2023-02-09
collection date
Anthony Bertucci
collector name
Pacific oyster
common name
digestive system gland [UBERON:0006925]
environmental medium
host-associated
environmental package
yes
environmental_sample
France
geographic location (country and/or sea)
0.00
m
geographic location (depth)
not applicable
m
geographic location (elevation)
not provided
DD
geographic location (latitude)
not provided
DD
geographic location (longitude)
bay of Bourgneuf, La Coupelasse
geographic location (region and locality)
bacteria_archaea
investigation type
Pacific oyster digestive gland
isolation_source
bay [ENVO:00000032]|intertidal zone [ENVO:00000316]|tidal mudflat [ENVO:00000241]|aquaculture farm [ENVO:03600074]
local environmental context
GTGAAT
multiplex identifiers
Magallana gigas
organism
5-CCTACGGGNGGCWGCAG-3' ; 5-GACTACHVGGGTATCTAATCC-3
pcr primers
symbiotox
project name
16S rRNA (V3-V4) sequencing of the digestive gland microbiota of the Pacific oyster (Crassostrea gigas) individual 19, collected in the bay of Bourgneuf (France), at La Coupelasse oyster beds site in February 2023
sample_description
LC-G19
sample_name
Magallana gigas
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V3-V4
target subfragment
Pacific oyster digestive gland microbiota, La Coupelasse, 16S rRNA (V3-V4), individual 19
title