2025-10-30
ENA first public
ERC000047
ENA-CHECKLIST
INRAe
INSDC center name
public
INSDC status
ERS26813383
SRA accession
metabat2.901
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
MEGAHIT;1.2.9 ‘;--presets meta-large’, MetaMDBG;0.3;default parameters
assembly software
Bins with 100% completeness and ≤5% contamination were considered complete MAGs. Bins meeting the ≥90% completeness criteria were labelled high-quality (HQ) MAGs. In comparison, those comprising between ≤90% and ≥50% completeness were considered medium-quality (MQ) MAGs. Bins below these thresholds were considered low-quality (LQ) MAGs, while those over 10% of contamination were classified as ‘contaminated bins’.
binning parameters
MetaBAT2 v2.15, SemiBin v1.5.0, DAStool v1.1.6
binning software
Mediterranean biome (ENVO 01001833)
broad-scale environmental context
2020-02-02
collection date
84.44
%
completeness score
CheckM2 v1.0.1
completeness software
2.5
%
contamination score
Soil sample between two rows of salad crops in a tunnel farming setup
description
cultivated environment (ENVO 01000311)
environmental medium
France
geographic location (country and/or sea)
43.65345
DD
geographic location (latitude)
5.26372
DD
geographic location (longitude)
soil sample between two rows of salad crops in a tunnel farming setup.
isolation_source
Hillside (ENVO 01000333) – cropland ecosystem (ENVO 01001244)
local environmental context
soil metagenome
metagenomic source
soil metagenome
organism
Accurate MAG reconstruction from complex soil microbiome through combined short- and HiFi long-reads metagenomics
project name
ERS26797009
sample derived from
soil metagenome
scientific_name
16S gene
taxonomic identity marker
Salade_Interrang_metabat2.901
title