2025-10-30
ENA first public
ERC000047
ENA-CHECKLIST
INRAe
INSDC center name
public
INSDC status
ERS26813470
SRA accession
semibin2_234
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT;1.2.9 ‘;--presets meta-large’, MetaMDBG;0.3;default parameters
assembly software
Bins with 100% completeness and ≤5% contamination were considered complete MAGs. Bins meeting the ≥90% completeness criteria were labelled high-quality (HQ) MAGs. In comparison, those comprising between ≤90% and ≥50% completeness were considered medium-quality (MQ) MAGs. Bins below these thresholds were considered low-quality (LQ) MAGs, while those over 10% of contamination were classified as ‘contaminated bins’.
binning parameters
MetaBAT2 v2.15, SemiBin v1.5.0, DAStool v1.1.6
binning software
Mediterranean biome (ENVO 01001833)
broad-scale environmental context
2020-02-02
collection date
74.96
%
completeness score
CheckM2 v1.0.1
completeness software
6.48
%
contamination score
Soil sample between two rows of salad crops in a tunnel farming setup
description
cultivated environment (ENVO 01000311)
environmental medium
France
geographic location (country and/or sea)
43.65345
DD
geographic location (latitude)
5.26372
DD
geographic location (longitude)
soil sample between two rows of salad crops in a tunnel farming setup.
isolation_source
Hillside (ENVO 01000333) – cropland ecosystem (ENVO 01001244)
local environmental context
soil metagenome
metagenomic source
soil metagenome
organism
Accurate MAG reconstruction from complex soil microbiome through combined short- and HiFi long-reads metagenomics
project name
ERS26797009
sample derived from
soil metagenome
scientific_name
16S gene
taxonomic identity marker
Salade_Interrang_semibin2_234
title