2025-10-30
ENA first public
ERC000013
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS27122531
SRA accession
sam_symbiotox_LN-B12
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
adapters
estuarine biome [ENVO:01000020]
broad-scale environmental context
SeBiMER
broker name
Ifremer, Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03
collecting institution
2023-02-20
collection date
Anthony Bertucci
collector name
Pacific oyster
common name
gill [UBERON:0002535]
environmental medium
host-associated
environmental package
yes
environmental_sample
France
geographic location (country and/or sea)
0.00
m
geographic location (depth)
not applicable
m
geographic location (elevation)
43.38391667
DD
geographic location (latitude)
-1.66288889
DD
geographic location (longitude)
Saint-Jean-de-Luz harbor, La Nivelle
geographic location (region and locality)
bacteria_archaea
investigation type
Pacific oyster gill
isolation_source
estuary [ENVO:00000045]|harbour [ENVO:00000463]
local environmental context
GAGTTG
multiplex identifiers
Magallana gigas
organism
5-CCTACGGGNGGCWGCAG-3' ; 5-GACTACHVGGGTATCTAATCC-3
pcr primers
symbiotox
project name
16S rRNA (V3-V4) sequencing of the gill microbiota of the Pacific oyster (Crassostrea gigas) individual 12, collected in the estuary of La Nivelle (France), close to Saint-Jean-de-Luz harbor in February 2023
sample_description
LN-B12
sample_name
Magallana gigas
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V3-V4
target subfragment
Pacific oyster gill microbiota, La Nivelle, 16S rRNA (V3-V4), individual 12
title