2025-10-30
ENA first public
ERC000013
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS27122600
SRA accession
sam_symbiotox_T-EXT-KIT4
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
adapters
not applicable
broad-scale environmental context
SeBiMER
broker name
Ifremer, Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03
collecting institution
2024-01-12
collection date
Anthony Bertucci
collector name
blank sample
common name
not applicable
environmental medium
host-associated
environmental package
yes
environmental_sample
France
geographic location (country and/or sea)
missing: control sample
m
geographic location (depth)
missing: control sample
m
geographic location (elevation)
missing: control sample
DD
geographic location (latitude)
missing: control sample
DD
geographic location (longitude)
missing: control sample
geographic location (region and locality)
bacteria_archaea
investigation type
molecular water
isolation_source
not applicable
local environmental context
GAGAGG
multiplex identifiers
blank sample
organism
5-CCTACGGGNGGCWGCAG-3' ; 5-GACTACHVGGGTATCTAATCC-3
pcr primers
symbiotox
project name
16S rRNA (V3-V4) sequencing of extraction blank from 2024-01-12
sample_description
T-EXT-KIT4
sample_name
blank sample
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V3-V4
target subfragment
DNA extraction control Kit_4
title