2025-10-30
ENA first public
ERC000013
ENA-CHECKLIST
Ifremer
INSDC center name
public
INSDC status
ERS27122370
SRA accession
sam_symbiotox_C-G08
Submitter Id
16S rRNA
TARGETED_LOCI
5'-CTTTCCCTACACGACGCTCTTCCGATCT-3' ; 5'-GGAGTTCAGACGTGTGCTCTTCCGATCT-3'
adapters
temperate biome [ENVO:01001831]|aquatic biome [ENVO:00002030]
broad-scale environmental context
SeBiMER
broker name
Ifremer, Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03
collecting institution
2023-02-20
collection date
Anthony Bertucci
collector name
Pacific oyster
common name
digestive system gland [UBERON:0006925]
environmental medium
host-associated
environmental package
yes
environmental_sample
France
geographic location (country and/or sea)
0.00
m
geographic location (depth)
not applicable
m
geographic location (elevation)
44.68394444
DD
geographic location (latitude)
-1.08458333
DD
geographic location (longitude)
Arcachon bay, Comprian site
geographic location (region and locality)
bacteria_archaea
investigation type
Pacific oyster digestive gland
isolation_source
lagoon [ENVO:00000038]|intertidal zone [ENVO:00000316]|tidal mudflat [ENVO:00000241]|marine park area [ENVO:00000362]
local environmental context
CACCTC
multiplex identifiers
Magallana gigas
organism
5-CCTACGGGNGGCWGCAG-3' ; 5-GACTACHVGGGTATCTAATCC-3
pcr primers
symbiotox
project name
16S rRNA (V3-V4) sequencing of the digestive gland microbiota of the Pacific oyster (Crassostrea gigas) individual 8, collected in the Arcachon bay (France), at the Comprian station in February 2023
sample_description
C-G08
sample_name
Magallana gigas
scientific_name
Sequencing by synthesis (Illumina)
sequencing method
16S rRNA
target gene
V3-V4
target subfragment
Pacific oyster digestive gland microbiota, Comprian, 16S rRNA (V3-V4), individual 8
title