2025-10-30
ENA first public
ERC000011
ENA-CHECKLIST
Guangdong Provincial Water Environment and Aquatic Products Security Engineering Technology Research Center, Guangzhou Key Laboratory of Aquatic Animal Diseases and Waterfowl Breeding, College of Animal Sciences and Technology, Zhongkai University of Agriculture and Engineering, Guangzhou, Guangdong, 510225, China
INSDC center name
public
INSDC status
ERS26984893
SRA accession
E-MTAB-15697:Sample 20
Submitter Id
0.1
year
age
ArrayExpress
broker name
not collected
collection date
spotted monkey flower
common name
Protocols: Grass carp (Ctenopharyngodon idella) were fasted for 24 h prior to sampling to minimize intestinal content interference. Following anesthesia with MS-222, fish were euthanized humanely, and the body surface was disinfected with 70% ethanol. Under aseptic conditions, the entire intestine was carefully dissected using sterile instruments. Intestinal contents or mucosal scrapings were collected with sterile forceps and spatulas, immediately transferred into pre-labeled sterile cryogenic tubes, and snap-frozen in liquid nitrogen. Samples were subsequently stored at −80°C until DNA extraction. All tools were sterilized between samples to prevent cross-contamination, and detailed metadata including sample ID, treatment group, and sampling date were recorded. Approximately 150–200 mg of frozen intestinal content or mucosal scraping was used per sample. DNA was extracted using a commercial microbial DNA kit (e.g., Qiagen DNeasy PowerSoil/PowerFecal Pro) following the manufacturer's protocol with a bead-beating step (2 × 30 s at high speed) to ensure efficient cell lysis. After mechanical disruption, samples were subjected to chemical lysis and inhibitor removal, and DNA was bound to the spin column, washed, and eluted in 50 µL nuclease-free water. A negative extraction control was processed in parallel. Extracted DNA was quantified by Qubit, purity checked by A260/280, and integrity verified by agarose gel electrophoresis; DNA was stored at −20°C (short term) or −80°C (long term) until 16S library preparation. The 16S rRNA V3–V4 region was amplified using primers 341F/806R with a high-fidelity polymerase. PCR products were purified with AMPure XP beads, indexed in a second PCR, and quantified using Qubit. After quality assessment and equimolar pooling, libraries were sequenced on the Illumina MiSeq platform (2×300 bp) with 10–20% PhiX control. Negative extraction and PCR controls were included throughout the process.
description
juvenile
developmental stage
Algae toxins
disease
16S rRNA
genotype
not collected
geographic location (country and/or sea)
4
individual
not applicable
isolate
Erythranthe guttata
organism
Mimulus guttatus
organism
gut
organism part
Erythranthe guttata
scientific_name
mixed
sex
microcystin-LR
stimulus
Low to high concentration
strain
Sample 20
title