ERC000024
ENA-CHECKLIST
Ifremer
INSDC center name
ERS27091211
SRA accession
sam_vibram_12-17-Th-W-E-coli
Submitter Id
mediterranean biome [ENVO:01001833]|aquatic biome [ENVO:00002030]
broad-scale environmental context
SeBiMER
broker name
2017-12-08
collection date
seawater metagenome
common name
1
m
depth
saline water [ENVO:00002010]
environmental medium
Water
environmental package
Yes
environmental_sample
France
geographic location (country and/or sea)
not applicable
m
geographic location (elevation)
43.4343
DD
geographic location (latitude)
3.664633
DD
geographic location (longitude)
Thau lagoon, Bouzigues site
geographic location (region and locality)
metagenome
investigation type
Surface water (1 meter depth) was collected using a hydrobios bottle and then filtered on a 5m filter to recover most protists
isolation_source
lagoon [ENVO:00000038]|aquaculture farm [ENVO:03600074]
local environmental context
seawater metagenome
organism
vibram
project name
GSC_MIxS_water
sample_checklist_description
18S rRNA (v4 loop) of protist metagenome from surface water collected in December of 2017, in Thau lagoon next to oyster tables at the Bouzigues station Ifremer-REPHY, enriched by culturing on bacterial layers (E. coli) on agar plates for 2 weeks
sample_description
12-17-Th-W-E-coli
sample_name
seawater metagenome
scientific_name
18S rRNA
target gene
V4
target subfragment
18S V4 rRNA, Culturable protist diversity, from surface water collected in December, 2017, at Thau lagoon, and enriched on an E. coli lawn
title