ERC000024
ENA-CHECKLIST
Ifremer
INSDC center name
ERS27091165
SRA accession
sam_vibram_03-17-Se-W-E-coli
Submitter Id
mediterranean sea biome [ENVO:01000047]
broad-scale environmental context
SeBiMER
broker name
2017-03-13
collection date
seawater metagenome
common name
1
m
depth
coastal sea water [ENVO:00002150]
environmental medium
Water
environmental package
Yes
environmental_sample
France
geographic location (country and/or sea)
not applicable
m
geographic location (elevation)
43.392317
DD
geographic location (latitude)
3.698883
DD
geographic location (longitude)
Sete harbor, open sea
geographic location (region and locality)
metagenome
investigation type
Surface water (1 meter depth) was collected using a hydrobios bottle and then filtered on a 5m filter to recover most protists
isolation_source
coast [ENVO:01000687]|artificial harbor [ENVO:00000464]
local environmental context
seawater metagenome
organism
vibram
project name
GSC_MIxS_water
sample_checklist_description
18S rRNA (v4 loop) of protist metagenome from surface sea water collected in March of 2017, in the open sea close to Sete harbor, enriched by culturing on bacterial layers (E. coli) on agar plates for 2 weeks
sample_description
03-17-Se-W-E-coli
sample_name
seawater metagenome
scientific_name
18S rRNA
target gene
V4
target subfragment
18S V4 rRNA, Culturable protist diversity, from surface sea water collected in March, 2017, at Sete, and enriched on an E. coli lawn
title