ERC000021
ENA-CHECKLIST
Ifremer
INSDC center name
ERS27074007
SRA accession
sam_vibram_09-17-Th-S-E-coli
Submitter Id
mediterranean biome [ENVO:01001833]|aquatic biome [ENVO:00002030]
broad-scale environmental context
SeBiMER
broker name
2017-09-11
collection date
marine sediment metagenome
common name
9
m
depth
not applicable
m
elevation
mud [ENVO:01000001]
environmental medium
Sediment
environmental package
Yes
environmental_sample
France
geographic location (country and/or sea)
43.4343
DD
geographic location (latitude)
3.664633
DD
geographic location (longitude)
Thau lagoon, Bouzigues site
geographic location (region and locality)
metagenome
investigation type
Surface sediment. First centimeters of sediments with cores taken by scuba divers at 9 meters deep.
isolation_source
lagoon [ENVO:00000038]|aquaculture farm [ENVO:03600074]
local environmental context
marine sediment metagenome
organism
vibram
project name
GSC_MIxS_sediment
sample_checklist_description
18S rRNA (v4 loop) of protist metagenome from sediment collected in September of 2017, in Thau lagoon next to oyster tables at the Bouzigues station Ifremer-REPHY, enriched by culturing on bacterial layers (E. coli) on agar plates for 2 weeks
sample_description
09-17-Th-S-E-coli
sample_name
marine sediment metagenome
scientific_name
18S rRNA
target gene
V4
target subfragment
18S V4 rRNA, Culturable protist diversity, from sediment collected in September, 2017, at Thau lagoon, and enriched on an E. coli lawn
title