2025-11-10
ENA first public
ERC000047:1.6
ENA-CHECKLIST
University of Lausanne
INSDC center name
public
INSDC status
ERS27201643
SRA accession
AGN007GA.6
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metaSPAdes;3.15.5;kmer set 21,33,55,77,99,127, default parameters otherwise
assembly software
minContig 2000, mexEdges 500, minCV 1, minClsSize 20000, default parameters otherwise
binning parameters
metabat2
binning software
anatomical entity environment
broad-scale environmental context
2018-07-04
collection date
97.92
%
completeness score
checkm
completeness software
1.13
%
contamination score
MAG recovered from gastric aspirate sample from children
description
gastric material
environmental medium
Central African Republic
geographic location (country and/or sea)
7.03236
DD
geographic location (latitude)
19.998123
DD
geographic location (longitude)
human gastric aspirate
isolation_source
digestive tract environment
local environmental context
human stomach metagenome
metagenomic source
Neisseria sp.
organism
Satellite
project name
ERS27186737
sample derived from
Neisseria sp.
scientific_name
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome from human stomach metagenome
title