characteristics.text: 2025-11-15
characteristics.characteristic: ENA first public
characteristics.text: ERC000011
characteristics.characteristic: ENA-CHECKLIST
characteristics.text: Northwestern University, Feinberg School of Medicine; Microbiology-Immunology Department
characteristics.characteristic: INSDC center name
characteristics.text: public
characteristics.characteristic: INSDC status
characteristics.text: ERS27189108
characteristics.characteristic: SRA accession
characteristics.text: E-MTAB-15997:shSETX2_CIN612_2
characteristics.characteristic: Submitter Id
characteristics.text: ArrayExpress
characteristics.characteristic: broker name
characteristics.text: CIN 612
characteristics.characteristic: cell line
characteristics.text: shSETX2 cells rep 2
characteristics.characteristic: cell type
characteristics.text: not collected
characteristics.characteristic: collection date
characteristics.text: human
characteristics.characteristic: common name
characteristics.text: Protocols: NIH-3T3 J2 cells were removed through treatment with versene for >5min. Primary cells were then scraped and harvested on ice. RNA was extracted using the Qiagen RNeasy Mini Kit. At least 1ug of RNA was submitted per sample. RNA libraries for RNA-seq were prepared using the DNBseq Eukaryotic Strand-specific Transcriptome Resequencing; stranded mRNA library (HNO2D).
characteristics.characteristic: description
characteristics.text: HPV positive
characteristics.characteristic: disease
characteristics.text: SETX-depleted
characteristics.characteristic: genotype
characteristics.text: not collected
characteristics.characteristic: geographic location (country and/or sea)
characteristics.text: not applicable
characteristics.characteristic: isolate
characteristics.text: Homo sapiens
characteristics.characteristic: organism
characteristics.text: Homo sapiens
characteristics.characteristic: organism
characteristics.text: cervix
characteristics.characteristic: organism part
characteristics.text: Homo sapiens
characteristics.characteristic: scientific_name
characteristics.text: shSETX2_CIN612_2
characteristics.characteristic: title