13.7
Biomass
SAMN52401075
External Id
Tulane University
INSDC center name
2025-10-06T00:00:00Z
INSDC first public
2025-10-09T17:44:56.970Z
INSDC last update
SRS26826795
INSDC secondary accession
live
INSDC status
Dried plant biomass weight (g) of aboveground plant biomass from a 20x20cm sub-plot of each plot
Litter
7.08
Litter_description
MIMS.me
NCBI submission model
MIGS/MIMS/MIMARKS.soil
NCBI submission model
MIMS.me.soil.6.0
NCBI submission package
SRS26826795
SRA accession
yes, pool b
Summed_seq_pool
Sampled labeled [sample_number][a/b] (ex: 1a, 1b) are part of the ITS library pool1, (samples 1_2018- 88_2020) which was run 2 times by the sequencer due to low read counts. During bioinformatic processing, the reads from these 2 duplicate runs were were summed with the following code after constructing the sequence table and before merging the sequencing table from all libraries into a single ITS table: seqtab_pool1 <- mergeSequenceTables(seqtab_1a,seqtab_1b,repeats="sum")
Summed_seq_pool_method
14.27
biomass_description
2020-09-01/2020-11-01
collection_date
10cm
depth
Keywords: GSC:MIxS;MIMS:6.0
description
not applicable
elev
brackish marsh
env_broad_scale
Native marsh plant community (dominant: Spartina patens)
env_local_scale
not applicable
env_medium
USA:Louisiana, southeast
geo_loc_name
30.23717 N 89.62407 W
lat_lon
soil metagenome
http://purl.obolibrary.org/obo/NCBITaxon_410658
organism
6.55
pH_method
soil pore water pH measured by pulling up water from 15cm depth with plastic sippers
salinity(ppt)
5.3
salinity_method
Marsh_Soil_Brackish_Native
title
soil pore water salinity measured by pulling up water from 15cm depth with plastic sippers
water depth (cm)