Yes
16S recovered
Infernal: 1.1.5
16S recovery software
2025-12-02
ENA first public
ERC000050
ENA-CHECKLIST
Tree of Life Programme
INSDC center name
public
INSDC status
minimap2: 2.3; coverm: 0.7.0
MAG coverage software
ERS28170213
SRA accession
cf26f7cd-b63c-4a11-ab9f-d002e82e7d1f
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metamdbg: 1.2
assembly software
graph; coverage; hic-mapping
binning parameters
dastool: 1.1.7; metabat2: 2.17; metator: 1.3.10; maxbin2: 2.2.7; bin3c: 0.3.3
binning software
aquatic biome
broad-scale environmental context
2017-02-19
collection date
95.15
%
completeness score
checkm2: 1.1.0
completeness software
0.03
%
contamination score
656
m
depth
adult sponge tissue
environmental medium
Pacific Ocean
geographic location (country and/or sea)
-45.03
DD
geographic location (latitude)
171.90
DD
geographic location (longitude)
Biemna sp. UH-2024
host scientific name
3127775
host taxid
metagenome-assembled genome
investigation type
Sponge: Biemna sp. UH-2024
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
23
number of standard tRNAs extracted
Gammaproteobacteria bacterium
organism
ASG
project name
SAMEA120648100
sample derived from
Gammaproteobacteria bacterium
scientific_name
Illumina NovaSeqX; Illumina NovaSeqX; PacBio Revio; Illumina NovaSeqX
sequencing method
tRNAscan-SE: 2.0.12
tRNA extraction software
GTDB-Tk: 2.5.2; GTDB DB: r226
taxonomic classification
taxonomic novelty determined using RED
taxonomic identity marker
cf26f7cd-b63c-4a11-ab9f-d002e82e7d1f-asg-odBieUhxx1_metamdbg_dastool_1
title
odBieUhxx1.Gammaproteobacteria_1
tolid