Yes
16S recovered
Infernal: 1.1.5
16S recovery software
2025-12-02
ENA first public
ERC000047
ENA-CHECKLIST
Tree of Life Programme
INSDC center name
public
INSDC status
minimap2: 2.3; coverm: 0.7.0
MAG coverage software
ERS28170218
SRA accession
a584551e-3254-4927-b990-794c899ab0d1
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metamdbg: 1.2
assembly software
graph; coverage; hic-mapping
binning parameters
dastool: 1.1.7; metabat2: 2.17; metator: 1.3.10; maxbin2: 2.2.7; bin3c: 0.3.3
binning software
aquatic biome
broad-scale environmental context
2017-02-19
collection date
86.79
%
completeness score
checkm2: 1.1.0
completeness software
1.71
%
contamination score
656
m
depth
adult sponge tissue
environmental medium
Pacific Ocean
geographic location (country and/or sea)
-45.03
DD
geographic location (latitude)
171.90
DD
geographic location (longitude)
South Pacific | Otago Slope | Open Ocean
geographic location (region and locality)
Biemna sp. UH-2024
host scientific name
3127775
host taxid
metagenome-assembled genome
investigation type
Sponge: Biemna sp. UH-2024
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
23
number of standard tRNAs extracted
Gammaproteobacteria bacterium
organism
ASG
project name
SAMEA120648100
sample derived from
Gammaproteobacteria bacterium
scientific_name
Illumina NovaSeqX; Illumina NovaSeqX; PacBio Revio; Illumina NovaSeqX
sequencing method
tRNAscan-SE: 2.0.12
tRNA extraction software
GTDB-Tk: 2.5.2; GTDB DB: r226
taxonomic classification
taxonomic classification fully defined by topology
taxonomic identity marker
a584551e-3254-4927-b990-794c899ab0d1-asg-odBieUhxx1_metamdbg_dastool_3
title
odBieUhxx1.Gammaproteobacteria_2
tolid