2025-12-12
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28326503
SRA accession
qiita_sid_12871:12871.2240
Submitter Id
54
age
18
age_of_first_coitus
not provided
age_range
not applicable
altitud
not applicable
altitude
not provided
anonymized_name
Yes
antibiotics_2months
not provided
antibiotics_how_many_days
not provided
antibiotics_last_2_months
not provided
biopsy
not provided
birth_mode
Vaginal
birthmode
24.95
bmi
Normal
bmi_analysis
not provided
bmi_ds
not provided
bmi_to_keep
not provided
brand_of_antibiotic
not provided
brand_of_vaccine
31_51_68
cervical_hpvhr
74
cervical_hpvlr
2022
collection date
2022
collection_date
2019
collection_timestamp
not provided
colposcopy
not provided
consensus
not provided
consensus_db
not provided
consensus_status
not provided
consensus_to_keep
LGSIL
consensus_worked
LGSIL
consensus_worked_no_ascus_chscctohgsil
Puerto Rico
country
not provided
cst
not provided
cst1
not provided
cyt_pat_in_record
not provided
cytology
not provided
cytology_date
not provided
date_of_last_use_day_month_year
not applicable
depth
ITS1 amplicon from cervical samples
description
not provided
disease_state
TRUE
dna_extracted
not provided
dosis
not provided
drinking
Yes
drinking_presentand_past
not provided
ds_to_keep
0
elevation
Host-associated
empo_1
Animal
empo_2
Animal secretion
empo_3
Animal secretion (non-saline)
empo_4
human-associated habitat
env_biome
not provided
env_feature
Cervical Lavage
env_material
human-vaginal
env_package
Puerto Rico:San Juan
geo_loc_name
Puerto Rico
geographic location (country and/or sea)
not provided
have_you_ever_used_antibiotics
not provided
hospital
years
host_age_units
UBERON:genitourinary system
host_body_habitat
UBERON:mucus
host_body_product
UBERON:vagina
host_body_site
human
host_common_name
not provided
host_height
not provided
host_height_units
adult
host_life_stage
female
host_sex
2240
host_subject_id
not provided
host_weight
not provided
host_weight_units
not provided
hpv_comercial
not provided
hpv_comercial_date
Positive
hpv_status
not provided
hpv_type_abbr
Both
hpv_types
not provided
hpv_types_hr_lr_both
No
hpv_vaccine
not provided
hr31
not provided
hr33
not provided
hr35
not provided
hr39
not provided
hr45
not provided
hr51
not provided
hr52
not provided
hr56
not provided
hr58
not provided
hr59
not provided
hr66
not provided
hr68
not provided
ifng
not provided
il_10
not provided
il_1b
not provided
il_4
not provided
il_6
not provided
il_8
not provided
ip10
not applicable
isolate_scientific_name
not applicable
isolate_strain_taxonomy_id
not provided
last_period
18.398374
latitude
-66.074534
longitude
not provided
lr19
not provided
lr40
not provided
lr43
not provided
lr44
not provided
lr53
not provided
lr54
not provided
lr6
not provided
lr70
not provided
lr74
not provided
mcp1
not provided
menopause
not provided
mip1a
2
n_of_sexual_partners
not provided
number_of_sexual_partners
human saliva metagenome
organism
not provided
pathology
not provided
pathology_date
not provided
ph
Microbial Ecology and Genomics Lab RCM San Juan PR
physical_specimen_location
TRUE
physical_specimen_remaining
not provided
pregnancy_status
not provided
pregnancy_trimester
not provided
pregnant
not provided
project_name
not provided
qiita_prepid
not provided
range_age_of_first_coitus
not provided
range_number_of_sexual_partners
not provided
range_sexual_partners
not provided
rank_score_ifng
not provided
rank_score_il_10
not provided
rank_score_il_1b
not provided
rank_score_il_4
not provided
rank_score_il_6
not provided
rank_score_il_8
not provided
rank_score_ip10
not provided
rank_score_mcp1
not provided
rank_score_mip1a
not provided
rank_score_tgfb1
not provided
rank_score_tgfb2
not provided
rank_score_tgfb3
not provided
rank_score_tnfa
not provided
reason_of_use
not provided
record_number
Menopause
reproductive_status
not provided
sample_overlap
Cervical_Lavage
sample_type
16S_2240
sampleid_file
not provided
samples_to_keep
not provided
sampling_date
2019
sampling_year
human saliva metagenome
scientific_name
not provided
sexual_preference
not provided
smoking
No
smoking_present_or_history
not provided
subcst
2240
subjectid
not provided
tgfb1
not provided
tgfb2
not provided
tgfb3
Cervicovaginal Microbiome in Hispanics using a multi-omics approach
title
12871.2240
title
not provided
tnfa
not provided
total_amount_of_hrhpv_types
not provided
tube_id
2_visit
visit_number