2025-12-12
ENA first public
ERC000047
ENA-CHECKLIST
NIH/NHGRI
INSDC center name
public
INSDC status
ERS28326727
SRA accession
ERR599146_metabat2_28_concoct_125
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
MEGAHIT_v1.2.9
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v1.3.0
binning software
marine biome (ENVO:00000447)
broad-scale environmental context
missing: third party data
collection date
96.6
%
completeness score
EukCC_v2.1.3
completeness software
0.8
%
contamination score
This sample represents a Metagenome-assembled genome assembled from the metagenomic runs ERR599146 of study ERP001736.
description
saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
environmental medium
missing: third party data
geographic location (country and/or sea)
-35.1728
DD
geographic location (latitude)
26.2868
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
marine metagenome
isolation_source
surface water layer (ENVO:00002042)
local environmental context
marine metagenome
metagenomic source
Ostreococcus lucimarinus CCE9901
organism
Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
project name
SAMEA2620855
sample derived from
Ostreococcus lucimarinus CCE9901
scientific_name
Illumina HiSeq 2000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: ERR599146_metabat2_28_concoct_125
title