2025-12-12
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28326512
SRA accession
qiita_sid_12871:12871.2268
Submitter Id
37
age
15
age_of_first_coitus
31_40
age_range
not applicable
altitud
not applicable
altitude
not provided
anonymized_name
No
antibiotics_2months
not provided
antibiotics_how_many_days
No
antibiotics_last_2_months
Yes
biopsy
Vaginal
birth_mode
Vaginal
birthmode
36.13
bmi
Obese_Class_II
bmi_analysis
Obese
bmi_ds
YES
bmi_to_keep
not provided
brand_of_antibiotic
not provided
brand_of_vaccine
Negative
cervical_hpvhr
Negative
cervical_hpvlr
2022
collection date
2022
collection_date
2021
collection_timestamp
No
colposcopy
HGSIL
consensus
YES
consensus_db
HGSIL/HPV-
consensus_status
YES
consensus_to_keep
HGSIL
consensus_worked
not provided
consensus_worked_no_ascus_chscctohgsil
Puerto Rico
country
not provided
cst
not provided
cst1
Yes_No
cyt_pat_in_record
LGSIL
cytology
12_Dec_2019
cytology_date
not provided
date_of_last_use_day_month_year
not applicable
depth
ITS1 amplicon from cervical samples
description
NEG_HGSIL
disease_state
yes
dna_extracted
not provided
dosis
No
drinking
No
drinking_presentand_past
NO
ds_to_keep
0
elevation
Host-associated
empo_1
Animal
empo_2
Animal secretion
empo_3
Animal secretion (non-saline)
empo_4
human-associated habitat
env_biome
human-associated habitat
env_feature
Cervical Lavage
env_material
human-vaginal
env_package
Puerto Rico:San Juan
geo_loc_name
Puerto Rico
geographic location (country and/or sea)
not provided
have_you_ever_used_antibiotics
UDH
hospital
years
host_age_units
UBERON:genitourinary system
host_body_habitat
UBERON:mucus
host_body_product
UBERON:vagina
host_body_site
human
host_common_name
not provided
host_height
not provided
host_height_units
adult
host_life_stage
female
host_sex
2268_KRT
host_subject_id
not provided
host_weight
not provided
host_weight_units
Positive _for_Other_HR_and_16
hpv_comercial
17_Jan_2020
hpv_comercial_date
Negative
hpv_status
NEG
hpv_type_abbr
Negative
hpv_types
Negative
hpv_types_hr_lr_both
No
hpv_vaccine
Negative
hr31
Negative
hr33
Negative
hr35
Negative
hr39
Negative
hr45
Negative
hr51
Negative
hr52
Negative
hr56
Negative
hr58
Negative
hr59
Negative
hr66
Negative
hr68
not provided
ifng
not provided
il_10
not provided
il_1b
not provided
il_4
not provided
il_6
not provided
il_8
not provided
ip10
not applicable
isolate_scientific_name
not applicable
isolate_strain_taxonomy_id
04_Mar_2020
last_period
18.398374
latitude
-66.074534
longitude
Negative
lr19
Negative
lr40
Negative
lr43
Negative
lr44
Negative
lr53
Negative
lr54
Negative
lr6
Negative
lr70
Negative
lr74
not provided
mcp1
No Menopause
menopause
not provided
mip1a
8
n_of_sexual_partners
8
number_of_sexual_partners
vaginal metagenome
organism
CIN_3
pathology
11_Mar_2020
pathology_date
not provided
ph
Microbial Ecology and Genomics Lab RCM San Juan PR
physical_specimen_location
yes
physical_specimen_remaining
not provided
pregnancy_status
not provided
pregnancy_trimester
No
pregnant
Association of cervical microbiota with cervical HPV infections
project_name
11566
qiita_prepid
10_15
range_age_of_first_coitus
5_9
range_number_of_sexual_partners
0_2
range_sexual_partners
not provided
rank_score_ifng
not provided
rank_score_il_10
not provided
rank_score_il_1b
not provided
rank_score_il_4
not provided
rank_score_il_6
not provided
rank_score_il_8
not provided
rank_score_ip10
not provided
rank_score_mcp1
not provided
rank_score_mip1a
not provided
rank_score_tgfb1
not provided
rank_score_tgfb2
not provided
rank_score_tgfb3
not provided
rank_score_tnfa
not provided
reason_of_use
SM432650
record_number
Non_pregnant
reproductive_status
B
sample_overlap
Cervical Lavage
sample_type
not provided
sampleid_file
YES
samples_to_keep
11_Mar_2020
sampling_date
2020
sampling_year
vaginal metagenome
scientific_name
Heterosexual
sexual_preference
No
smoking
No
smoking_present_or_history
not provided
subcst
not provided
subjectid
not provided
tgfb1
not provided
tgfb2
not provided
tgfb3
Cervicovaginal Microbiome in Hispanics using a multi-omics approach
title
12871.2268
title
not provided
tnfa
0
total_amount_of_hrhpv_types
not provided
tube_id
1st_visit
visit_number