2025-12-14
ENA first public
ERC000047
ENA-CHECKLIST
EMG
INSDC center name
public
INSDC status
ERS28333645
SRA accession
SRR6456147_bin_11
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaspades_v3.15.5
assembly software
default
binning parameters
MGnify-genomes-generation-pipeline_v2.0.0
binning software
human
broad-scale environmental context
EBI-EMG
broker name
2016-04-05
collection date
85.89
%
completeness score
CheckM2_v1.0.1
completeness software
1.2
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR6456147 of study SRP128485.
description
intestine
environmental medium
China
geographic location (country and/or sea)
missing: third party data
DD
geographic location (latitude)
missing: third party data
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
human gut metagenome
isolation_source
digestive system
local environmental context
human gut metagenome
metagenomic source
Alistipes onderdonkii
organism
An increasing number of metagenomics researches found Gut microbiota (GM) were implicated with CRC. Here, we collected 168 fecal samples from Chong Qing CRC patients for studying the GM in Chinese typical population. We found that diet influenced CRC patients’ GM in composition and metabolic. Besides, specific species and gene fragments in CRC patients were discovered in familiar paired samples, and which were identified in other countries’ CRC patients.
project name
SAMN08335123
sample derived from
Alistipes onderdonkii
scientific_name
HiSeq X Ten
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR6456147_bin_11
title