2025-12-17
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28346076
SRA accession
qiita_sid_11479:11479.RATCECUM.MI.00077EA8DC
Submitter Id
RATCECUM.MI.00077EA8DC
anonymized_name
FALSE
bad_rat
Batch05
batch
not applicable
batchnumber
B05-21
cage
3
cage_density
box12
ccc_box
MI-B05-CC4
cecum_box
00077EA8DC
clean_ids_16s
2015-09-17
collection date
2015-09-17
collection_date
2015-09-17 14:06:00
collection_timestamp
brownhood
color
11479_prep_4078_20191016-101009_11479.RATCECUM.MI.00077EA8DC
compound_name_16s
USA
country
crf_MI_box16
crf_mi_box
not provided
crf_ny_box
HSF01827
dam
2015-09-17 14:06:00
datetime_dissected
2015-09-16 18:00:00
datetime_fasting_started
9/17/15 13:49
datetime_glucose_measured_at_dissection
175555
deblur_biom_id
175555.11479.RATCECUM.MI.00077EA8DC
deblur_rooname
not provided
delay_discounting_box
cecum; Heterogeneous Stock rat; University of Michigan
description
TRUE
dna_extracted
2015-06-16
dob
2015-07-06
dow
NA
duplicated_16s
LT
earpunchlcn
840
elevation
Host-associated
empo_1
Animal (non-saline)
empo_2
Animal proximal gut (non-saline)
empo_3
Animal proximal gut (non-saline)
empo_4
urban biome
env_biome
animal-associated habitat
env_feature
intestine environment
env_material
host-associated
env_package
41937.11479.RATCECUM.MI.00077EA8DC
full_ids_16s
74
generation
TRUE
genotyped
USA:MI:Ann Arbor
geo_loc_name
USA
geographic location (country and/or sea)
85
glucose_at_dissection
119
glucose_at_weaning
mg_dl
glucose_units
no
has_dupl_16s
93.8375
host_age
days
host_age_units
UBERON:gastro-intestinal system
host_body_habitat
UBERON:lumen of gut
host_body_product
UBERON:cecum
host_body_site
rat
host_common_name
not provided
host_life_stage
Rattus norvegicus
host_scientific_name
female
host_sex
00077EA8DC
host_subject_id
10116
host_taxid
224
host_weight
g
host_weight_units
YES
in_16s_prep
42.28
latitude
cm
length_units
37.5
length_w_tail
20.5
length_wo_tail
5
litternumber
5
littersize
not provided
locomotor_testing_box
-83.74
longitude
not applicable
losttransp
YES
metabolomicsed
11140
nb_seqs_16s
not_thawed
notes_cecum
box12
novelty_seeking_box
rat gut metagenome
organism
00077EA8DC
orig_name_16s
41937
otu_biom_id_16s
box16
pavca_mi_box
not provided
pavca_ny_box
MI
phenotyping_center
Baud lab, Centre for Genomic Regulation, Barcelona, Spain
physical_specimen_location
not provided
physical_specimen_remaining
11479_prep_4078_20191016-101009
prep_name_16s
Palmer_Rats
project_name_16s
4078
qiita_prep_id_16s
cecum content
qiita_sample_type
not provided
reaction_time_box
11479.RATCECUM.MI.00077EA8DC
sample_name_16s
00077EA8DC
sample_name_in_metadata_16s
11479.RATCECUM.MI.00077EA8DC
sample_name_metabo
not applicable
sample_name_mg
rat cecum content
sample_type
rat gut metagenome
scientific_name
YES
sequenced_16s
NO
sequenced_mg
7/28/15
shipment_to_phenotyping_center_date
HSM01832
sire
not provided
social_reinforcement_box
MI
study
20.1
time_elapsed_removefood_dissection
19.81666667
time_elapsed_removefood_measure
11479.RATCECUM.MI.00077EA8DC
title
Genome-wide mapping of gene-microbiome interaction: implication in behavior and effect on microbiome and metabolome
title
not provided
tn_cage
not provided
tn_track
00077EA8DC
tube_id
FALSE
unknown_rat
15-109-044
weaning_cagecard
3-C6
weaning_cagelocation
630
weaning_roomnumber
MI-B05-5
weaning_shippingbox
F
weaning_suite
52
weight_at_weaning