2025-12-17
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28345528
SRA accession
qiita_sid_11479:11479.RATCECUM.NY.00077E7C2E
Submitter Id
RATCECUM.NY.00077E7C2E
anonymized_name
FALSE
bad_rat
Batch04
batch
not applicable
batchnumber
E-26
cage
1
cage_density
not provided
ccc_box
NY-CC8
cecum_box
00077E7C2E
clean_ids_16s
2016-01-04
collection date
2016-01-04
collection_date
2016-01-04 09:52:00
collection_timestamp
blackhood
color
11479_prep_4075_20191016-122239_11479.RATCECUM.NY.00077E7C2E
compound_name_16s
USA
country
not provided
crf_mi_box
box5
crf_ny_box
HSF01958
dam
2016-01-04 09:52:00
datetime_dissected
2016-01-03 21:00:00
datetime_fasting_started
1/4/16 9:45
datetime_glucose_measured_at_dissection
175547
deblur_biom_id
175547.11479.RATCECUM.NY.00077E7C2E
deblur_rooname
C3
delay_discounting_box
cecum; Heterogeneous Stock rat; University of New York
description
TRUE
dna_extracted
2015-06-30
dob
2015-07-21
dow
FALSE
duplicated_16s
LTRB
earpunchlcn
600
elevation
Host-associated
empo_1
Animal (non-saline)
empo_2
Animal proximal gut (non-saline)
empo_3
Animal proximal gut (non-saline)
empo_4
urban biome
env_biome
animal-associated habitat
env_feature
intestine environment
env_material
host-associated
env_package
41941.11479.RATCECUM.NY.00077E7C2E
full_ids_16s
75
generation
TRUE
genotyped
USA:NY:Buffalo
geo_loc_name
USA
geographic location (country and/or sea)
91
glucose_at_dissection
116
glucose_at_weaning
mg_dl
glucose_units
no
has_dupl_16s
188.70278
host_age
days
host_age_units
UBERON:gastro-intestinal system
host_body_habitat
UBERON:lumen of gut
host_body_product
UBERON:cecum
host_body_site
rat
host_common_name
not provided
host_life_stage
Rattus norvegicus
host_scientific_name
male
host_sex
00077E7C2E
host_subject_id
10116
host_taxid
347
host_weight
g
host_weight_units
YES
in_16s_prep
42.89
latitude
cm
length_units
41
length_w_tail
21
length_wo_tail
2
litternumber
13
littersize
E3
locomotor_testing_box
-78.88
longitude
not applicable
losttransp
YES
metabolomicsed
19159
nb_seqs_16s
not_thawed
notes_cecum
not provided
novelty_seeking_box
rat gut metagenome
organism
77E7C2E
orig_name_16s
41941
otu_biom_id_16s
not provided
pavca_mi_box
box5
pavca_ny_box
NY
phenotyping_center
Baud lab, Centre for Genomic Regulation, Barcelona, Spain
physical_specimen_location
not provided
physical_specimen_remaining
11479_prep_4075_20191016-122239
prep_name_16s
Palmer_Rats
project_name_16s
4075
qiita_prep_id_16s
cecum content
qiita_sample_type
B3
reaction_time_box
11479.RATCECUM.NY.00077E7C2E
sample_name_16s
00077E7C2E
sample_name_in_metadata_16s
11479.RATCECUM.NY.00077E7C2E
sample_name_metabo
11479.RATCECUM.NY.00077E7C2E
sample_name_mg
rat cecum content
sample_type
rat gut metagenome
scientific_name
YES
sequenced_16s
YES
sequenced_mg
7/28/15
shipment_to_phenotyping_center_date
HSM01920
sire
not provided
social_reinforcement_box
NY
study
12.86666667
time_elapsed_removefood_dissection
12.75
time_elapsed_removefood_measure
11479.RATCECUM.NY.00077E7C2E
title
Genome-wide mapping of gene-microbiome interaction: implication in behavior and effect on microbiome and metabolome
title
not provided
tn_cage
not provided
tn_track
00077E7C2E
tube_id
FALSE
unknown_rat
15-109-112
weaning_cagecard
3-B2
weaning_cagelocation
630
weaning_roomnumber
NY-B04-6
weaning_shippingbox
F
weaning_suite
33
weight_at_weaning