2025-12-17
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28347462
SRA accession
qiita_sid_11479:11479.00077E7CD7
Submitter Id
00077E7CD7
anonymized_name
FALSE
bad_rat
Batch22
batch
not applicable
batchnumber
B22-20
cage
3
cage_density
box12
ccc_box
not provided
cecum_box
00077E7CD7
clean_ids_16s
not provided
collection date
not provided
collection_date
not provided
collection_timestamp
brown
color
11479_prep_6827_20191016-101102_11479.00077E7CD7
compound_name_16s
USA
country
crf_MI_box16
crf_mi_box
not provided
crf_ny_box
HSF02658
dam
NA
datetime_dissected
not provided
datetime_fasting_started
not provided
datetime_glucose_measured_at_dissection
175549
deblur_biom_id
175549.11479.00077E7CD7
deblur_rooname
not provided
delay_discounting_box
cecum; Heterogeneous Stock rat; University of Michigan
description
TRUE
dna_extracted
2017-12-18
dob
2018-01-08
dow
NA
duplicated_16s
LC
earpunchlcn
840
elevation
Host-associated
empo_1
Animal (non-saline)
empo_2
Animal proximal gut (non-saline)
empo_3
Animal proximal gut (non-saline)
empo_4
urban biome
env_biome
animal-associated habitat
env_feature
intestine environment
env_material
host-associated
env_package
72564.11479.00077E7CD7
full_ids_16s
82
generation
TRUE
genotyped
USA:MI:Ann Arbor
geo_loc_name
USA
geographic location (country and/or sea)
76
glucose_at_dissection
99
glucose_at_weaning
mg_dl
glucose_units
no
has_dupl_16s
87.83125
host_age
days
host_age_units
UBERON:gastro-intestinal system
host_body_habitat
UBERON:lumen of gut
host_body_product
UBERON:cecum
host_body_site
rat
host_common_name
not provided
host_life_stage
Rattus norvegicus
host_scientific_name
female
host_sex
00077E7CD7
host_subject_id
10116
host_taxid
186
host_weight
g
host_weight_units
YES
in_16s_prep
42.28
latitude
cm
length_units
38
length_w_tail
20
length_wo_tail
3
litternumber
8
littersize
not provided
locomotor_testing_box
-83.74
longitude
not applicable
losttransp
NO
metabolomicsed
24090
nb_seqs_16s
not provided
notes_cecum
box10
novelty_seeking_box
rat gut metagenome
organism
00077E7CD7
orig_name_16s
72564
otu_biom_id_16s
box16
pavca_mi_box
not provided
pavca_ny_box
MI
phenotyping_center
Baud lab, Centre for Genomic Regulation, Barcelona, Spain
physical_specimen_location
not provided
physical_specimen_remaining
11479_prep_6827_20191016-101102
prep_name_16s
Palmer Rats Winter2018
project_name_16s
6827
qiita_prep_id_16s
cecum content
qiita_sample_type
not provided
reaction_time_box
11479.00077E7CD7
sample_name_16s
00077E7CD7
sample_name_in_metadata_16s
not applicable
sample_name_metabo
not applicable
sample_name_mg
rat cecum content
sample_type
rat gut metagenome
scientific_name
YES
sequenced_16s
NO
sequenced_mg
1/23/18
shipment_to_phenotyping_center_date
HSM02609
sire
not provided
social_reinforcement_box
MI
study
not provided
time_elapsed_removefood_dissection
not provided
time_elapsed_removefood_measure
11479.00077E7CD7
title
Genome-wide mapping of gene-microbiome interaction: implication in behavior and effect on microbiome and metabolome
title
not provided
tn_cage
not provided
tn_track
00077E7CD7
tube_id
FALSE
unknown_rat
17-135-692
weaning_cagecard
3-A8
weaning_cagelocation
630
weaning_roomnumber
MI-B22-6
weaning_shippingbox
F
weaning_suite
52
weight_at_weaning