2025-12-17
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28347319
SRA accession
qiita_sid_11479:11479.0007D3CA09
Submitter Id
0007D3CA09
anonymized_name
FALSE
bad_rat
Batch16
batch
not applicable
batchnumber
Q-47
cage
2
cage_density
not provided
ccc_box
NY-CC91
cecum_box
0007D3CA09
clean_ids_16s
2018-12-18
collection date
2018-12-18
collection_date
2018-12-18 11:32:00
collection_timestamp
black
color
11479_prep_6826_20191016-101057_11479.0007D3CA09
compound_name_16s
USA
country
not provided
crf_mi_box
box2
crf_ny_box
HSF02604
dam
2018-12-18 11:32:00
datetime_dissected
2018-12-17 19:30:00
datetime_fasting_started
12/18/18 11:25
datetime_glucose_measured_at_dissection
175552
deblur_biom_id
175552.11479.0007D3CA09
deblur_rooname
C9
delay_discounting_box
cecum; Heterogeneous Stock rat; University of New York
description
TRUE
dna_extracted
2018-06-26
dob
2018-07-17
dow
NA
duplicated_16s
LMRT
earpunchlcn
600
elevation
Host-associated
empo_1
Animal (non-saline)
empo_2
Animal proximal gut (non-saline)
empo_3
Animal proximal gut (non-saline)
empo_4
urban biome
env_biome
animal-associated habitat
env_feature
intestine environment
env_material
host-associated
env_package
72629.11479.0007D3CA09
full_ids_16s
82
generation
TRUE
genotyped
USA:NY:Buffalo
geo_loc_name
USA
geographic location (country and/or sea)
79
glucose_at_dissection
117
glucose_at_weaning
mg_dl
glucose_units
no
has_dupl_16s
175.77222
host_age
days
host_age_units
UBERON:gastro-intestinal system
host_body_habitat
UBERON:lumen of gut
host_body_product
UBERON:cecum
host_body_site
rat
host_common_name
not provided
host_life_stage
Rattus norvegicus
host_scientific_name
female
host_sex
0007D3CA09
host_subject_id
10116
host_taxid
213
host_weight
g
host_weight_units
YES
in_16s_prep
42.89
latitude
cm
length_units
39
length_w_tail
20
length_wo_tail
10
litternumber
5
littersize
E1
locomotor_testing_box
-78.88
longitude
not applicable
losttransp
NO
metabolomicsed
20132
nb_seqs_16s
not_thawed
notes_cecum
not provided
novelty_seeking_box
rat gut metagenome
organism
0007D3CA09
orig_name_16s
72629
otu_biom_id_16s
not provided
pavca_mi_box
box2
pavca_ny_box
NY
phenotyping_center
Baud lab, Centre for Genomic Regulation, Barcelona, Spain
physical_specimen_location
not provided
physical_specimen_remaining
11479_prep_6826_20191016-101057
prep_name_16s
Palmer Rat
project_name_16s
6826
qiita_prep_id_16s
cecum content
qiita_sample_type
B1
reaction_time_box
11479.0007D3CA09
sample_name_16s
0007D3CA09
sample_name_in_metadata_16s
not applicable
sample_name_metabo
not applicable
sample_name_mg
rat cecum content
sample_type
rat gut metagenome
scientific_name
YES
sequenced_16s
NO
sequenced_mg
7/23/18
shipment_to_phenotyping_center_date
HSM02641
sire
S7
social_reinforcement_box
NY
study
16.03333333
time_elapsed_removefood_dissection
15.91666667
time_elapsed_removefood_measure
11479.0007D3CA09
title
Genome-wide mapping of gene-microbiome interaction: implication in behavior and effect on microbiome and metabolome
title
not provided
tn_cage
not provided
tn_track
0007D3CA09
tube_id
FALSE
unknown_rat
18-120-087
weaning_cagecard
F635
weaning_cagelocation
630
weaning_roomnumber
NY-B16-13
weaning_shippingbox
F
weaning_suite
48
weight_at_weaning