2025-12-17
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28348965
SRA accession
qiita_sid_11479:11479.00077E9ACF
Submitter Id
00077E9ACF
anonymized_name
FALSE
bad_rat
Batch12
batch
not applicable
batchnumber
00077E9ACF,00077E9C1E
cage
2
cage_density
not provided
ccc_box
TN-CECUM-095
cecum_box
00077E9ACF
clean_ids_16s
2018-02-13
collection date
2018-02-13
collection_date
2018-02-13 14:39:00
collection_timestamp
brownhood
color
11479_prep_7808_20191016-101126_11479.00077E9ACF
compound_name_16s
USA
country
not provided
crf_mi_box
not provided
crf_ny_box
HSF02561
dam
2018-02-13 14:39:00
datetime_dissected
2018-02-12 18:29:00
datetime_fasting_started
2/13/18 13:38
datetime_glucose_measured_at_dissection
175550
deblur_biom_id
175550.11479.00077E9ACF
deblur_rooname
not provided
delay_discounting_box
cecum; Heterogeneous Stock rat; University of Tennessee Health Science Center
description
TRUE
dna_extracted
2017-06-25
dob
2017-07-17
dow
NA
duplicated_16s
LC
earpunchlcn
253
elevation
Host-associated
empo_1
Animal (non-saline)
empo_2
Animal proximal gut (non-saline)
empo_3
Animal proximal gut (non-saline)
empo_4
urban biome
env_biome
animal-associated habitat
env_feature
intestine environment
env_material
host-associated
env_package
79988.11479.00077E9ACF
full_ids_16s
81
generation
TRUE
genotyped
USA:TN:Memphis
geo_loc_name
USA
geographic location (country and/or sea)
75
glucose_at_dissection
112
glucose_at_weaning
mg_dl
glucose_units
no
has_dupl_16s
233.90211
host_age
days
host_age_units
UBERON:gastro-intestinal system
host_body_habitat
UBERON:lumen of gut
host_body_product
UBERON:cecum
host_body_site
rat
host_common_name
not provided
host_life_stage
Rattus norvegicus
host_scientific_name
male
host_sex
00077E9ACF
host_subject_id
10116
host_taxid
454
host_weight
g
host_weight_units
YES
in_16s_prep
35.05
latitude
cm
length_units
43
length_w_tail
22
length_wo_tail
1
litternumber
11
littersize
not provided
locomotor_testing_box
-89.98
longitude
not applicable
losttransp
NO
metabolomicsed
17702
nb_seqs_16s
not_thawed
notes_cecum
not provided
novelty_seeking_box
rat gut metagenome
organism
00077E9ACF
orig_name_16s
79988
otu_biom_id_16s
not provided
pavca_mi_box
not provided
pavca_ny_box
TN
phenotyping_center
Baud lab, Centre for Genomic Regulation, Barcelona, Spain
physical_specimen_location
not provided
physical_specimen_remaining
11479_prep_7808_20191016-101126
prep_name_16s
Palmer Rats 2019
project_name_16s
7808
qiita_prep_id_16s
cecum content
qiita_sample_type
not provided
reaction_time_box
11479.00077E9ACF
sample_name_16s
00077E9ACF
sample_name_in_metadata_16s
not applicable
sample_name_metabo
not applicable
sample_name_mg
rat cecum content
sample_type
rat gut metagenome
scientific_name
YES
sequenced_16s
NO
sequenced_mg
8/7/17
shipment_to_phenotyping_center_date
HSM02513
sire
not provided
social_reinforcement_box
TN_breeder
study
20.16666667
time_elapsed_removefood_dissection
19.15
time_elapsed_removefood_measure
11479.00077E9ACF
title
Genome-wide mapping of gene-microbiome interaction: implication in behavior and effect on microbiome and metabolome
title
not provided
tn_cage
breeder
tn_track
00077E9ACF
tube_id
FALSE
unknown_rat
17-118-477
weaning_cagecard
4-C4
weaning_cagelocation
630
weaning_roomnumber
TN-B12-2
weaning_shippingbox
F
weaning_suite
48
weight_at_weaning