2025-12-17
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28346130
SRA accession
qiita_sid_11479:11479.RATCECUM.NY.00077E7D0E
Submitter Id
RATCECUM.NY.00077E7D0E
anonymized_name
FALSE
bad_rat
Batch09
batch
not applicable
batchnumber
J-42
cage
2
cage_density
not provided
ccc_box
NY-CC44
cecum_box
00077E7D0E
clean_ids_16s
2017-04-03
collection date
2017-04-03
collection_date
2017-04-03 11:40:00
collection_timestamp
brown
color
11479_prep_4078_20191016-101009_11479.RATCECUM.NY.00077E7D0E
compound_name_16s
USA
country
not provided
crf_mi_box
box14
crf_ny_box
HSF02301
dam
2017-04-03 11:40:00
datetime_dissected
2017-04-02 20:55:00
datetime_fasting_started
4/3/17 11:30
datetime_glucose_measured_at_dissection
175555
deblur_biom_id
175555.11479.RATCECUM.NY.00077E7D0E
deblur_rooname
A15
delay_discounting_box
cecum; Heterogeneous Stock rat; University of New York
description
TRUE
dna_extracted
2016-09-16
dob
2016-10-07
dow
NA
duplicated_16s
RB
earpunchlcn
600
elevation
Host-associated
empo_1
Animal (non-saline)
empo_2
Animal proximal gut (non-saline)
empo_3
Animal proximal gut (non-saline)
empo_4
urban biome
env_biome
animal-associated habitat
env_feature
intestine environment
env_material
host-associated
env_package
41937.11479.RATCECUM.NY.00077E7D0E
full_ids_16s
79
generation
TRUE
genotyped
USA:NY:Buffalo
geo_loc_name
USA
geographic location (country and/or sea)
68
glucose_at_dissection
107
glucose_at_weaning
mg_dl
glucose_units
no
has_dupl_16s
199.73611
host_age
days
host_age_units
UBERON:gastro-intestinal system
host_body_habitat
UBERON:lumen of gut
host_body_product
UBERON:cecum
host_body_site
rat
host_common_name
not provided
host_life_stage
Rattus norvegicus
host_scientific_name
female
host_sex
00077E7D0E
host_subject_id
10116
host_taxid
221
host_weight
g
host_weight_units
YES
in_16s_prep
42.89
latitude
cm
length_units
39.5
length_w_tail
20.5
length_wo_tail
1
litternumber
9
littersize
E7
locomotor_testing_box
-78.88
longitude
not applicable
losttransp
YES
metabolomicsed
15304
nb_seqs_16s
not_thawed
notes_cecum
not provided
novelty_seeking_box
rat gut metagenome
organism
00077E7D0E
orig_name_16s
41937
otu_biom_id_16s
not provided
pavca_mi_box
box14
pavca_ny_box
NY
phenotyping_center
Baud lab, Centre for Genomic Regulation, Barcelona, Spain
physical_specimen_location
not provided
physical_specimen_remaining
11479_prep_4078_20191016-101009
prep_name_16s
Palmer_Rats
project_name_16s
4078
qiita_prep_id_16s
cecum content
qiita_sample_type
B7
reaction_time_box
11479.RATCECUM.NY.00077E7D0E
sample_name_16s
00077E7D0E
sample_name_in_metadata_16s
11479.RATCECUM.NY.00077E7D0E
sample_name_metabo
11479.RATCECUM.NY.00077E7D0E
sample_name_mg
rat cecum content
sample_type
rat gut metagenome
scientific_name
YES
sequenced_16s
YES
sequenced_mg
10/25/16
shipment_to_phenotyping_center_date
HSM02307
sire
S2
social_reinforcement_box
NY
study
14.75
time_elapsed_removefood_dissection
14.58333333
time_elapsed_removefood_measure
11479.RATCECUM.NY.00077E7D0E
title
Genome-wide mapping of gene-microbiome interaction: implication in behavior and effect on microbiome and metabolome
title
not provided
tn_cage
not provided
tn_track
00077E7D0E
tube_id
FALSE
unknown_rat
16-137-539
weaning_cagecard
3-D6
weaning_cagelocation
630
weaning_roomnumber
NY-B09-14
weaning_shippingbox
F
weaning_suite
38
weight_at_weaning