2025-12-17
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28346871
SRA accession
qiita_sid_11479:11479.00077E7629
Submitter Id
00077E7629
anonymized_name
FALSE
bad_rat
Batch07
batch
not applicable
batchnumber
00077E7629,00077E8261
cage
2
cage_density
not provided
ccc_box
TN-CECUM-048
cecum_box
00077E7629
clean_ids_16s
2016-10-04
collection date
2016-10-04
collection_date
2016-10-04 15:19:00
collection_timestamp
brown
color
11479_prep_6826_20191016-101057_11479.00077E7629
compound_name_16s
USA
country
not provided
crf_mi_box
not provided
crf_ny_box
HSF02148
dam
2016-10-04 15:19:00
datetime_dissected
2016-10-03 17:45:00
datetime_fasting_started
10/4/16 12:43
datetime_glucose_measured_at_dissection
175552
deblur_biom_id
175552.11479.00077E7629
deblur_rooname
not provided
delay_discounting_box
cecum; Heterogeneous Stock rat; University of Tennessee Health Science Center
description
TRUE
dna_extracted
2016-04-25
dob
2016-05-16
dow
NA
duplicated_16s
LC
earpunchlcn
253
elevation
Host-associated
empo_1
Animal (non-saline)
empo_2
Animal proximal gut (non-saline)
empo_3
Animal proximal gut (non-saline)
empo_4
urban biome
env_biome
animal-associated habitat
env_feature
intestine environment
env_material
host-associated
env_package
72629.11479.00077E7629
full_ids_16s
77
generation
TRUE
genotyped
USA:TN:Memphis
geo_loc_name
USA
geographic location (country and/or sea)
90
glucose_at_dissection
101
glucose_at_weaning
mg_dl
glucose_units
no
has_dupl_16s
162.88868
host_age
days
host_age_units
UBERON:gastro-intestinal system
host_body_habitat
UBERON:lumen of gut
host_body_product
UBERON:cecum
host_body_site
rat
host_common_name
not provided
host_life_stage
Rattus norvegicus
host_scientific_name
male
host_sex
00077E7629
host_subject_id
10116
host_taxid
315
host_weight
g
host_weight_units
YES
in_16s_prep
35.05
latitude
cm
length_units
43.5
length_w_tail
21
length_wo_tail
3
litternumber
11
littersize
not provided
locomotor_testing_box
-89.98
longitude
not applicable
losttransp
NO
metabolomicsed
19414
nb_seqs_16s
not_thawed
notes_cecum
not provided
novelty_seeking_box
rat gut metagenome
organism
00077E7629
orig_name_16s
72629
otu_biom_id_16s
not provided
pavca_mi_box
not provided
pavca_ny_box
TN
phenotyping_center
Baud lab, Centre for Genomic Regulation, Barcelona, Spain
physical_specimen_location
not provided
physical_specimen_remaining
11479_prep_6826_20191016-101057
prep_name_16s
Palmer Rat
project_name_16s
6826
qiita_prep_id_16s
cecum content
qiita_sample_type
not provided
reaction_time_box
11479.00077E7629
sample_name_16s
00077E7629
sample_name_in_metadata_16s
not applicable
sample_name_metabo
not applicable
sample_name_mg
rat cecum content
sample_type
rat gut metagenome
scientific_name
YES
sequenced_16s
NO
sequenced_mg
6/6/16
shipment_to_phenotyping_center_date
HSM02154
sire
not provided
social_reinforcement_box
TN_breeder
study
21.56666667
time_elapsed_removefood_dissection
18.96666667
time_elapsed_removefood_measure
11479.00077E7629
title
Genome-wide mapping of gene-microbiome interaction: implication in behavior and effect on microbiome and metabolome
title
CC00182890
tn_cage
breeder
tn_track
00077E7629
tube_id
FALSE
unknown_rat
16-120-231
weaning_cagecard
4-D7
weaning_cagelocation
630
weaning_roomnumber
TN-B07-3
weaning_shippingbox
F
weaning_suite
43
weight_at_weaning