2025-12-17
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28345541
SRA accession
qiita_sid_11479:11479.RATCECUM.NY.00077E8197
Submitter Id
RATCECUM.NY.00077E8197
anonymized_name
FALSE
bad_rat
Batch07
batch
not applicable
batchnumber
H-24
cage
2
cage_density
not provided
ccc_box
NY-CC-31
cecum_box
00077E8197
clean_ids_16s
2016-09-26
collection date
2016-09-26
collection_date
2016-09-26 12:39:00
collection_timestamp
blackhood
color
11479_prep_4075_20191016-122239_11479.RATCECUM.NY.00077E8197
compound_name_16s
USA
country
not provided
crf_mi_box
box16
crf_ny_box
HSF01925
dam
2016-09-26 12:39:00
datetime_dissected
2016-09-25 19:30:00
datetime_fasting_started
9/26/16 12:33
datetime_glucose_measured_at_dissection
175547
deblur_biom_id
175547.11479.RATCECUM.NY.00077E8197
deblur_rooname
A16
delay_discounting_box
cecum; Heterogeneous Stock rat; University of New York
description
TRUE
dna_extracted
2016-03-25
dob
2016-04-15
dow
FALSE
duplicated_16s
RM
earpunchlcn
600
elevation
Host-associated
empo_1
Animal (non-saline)
empo_2
Animal proximal gut (non-saline)
empo_3
Animal proximal gut (non-saline)
empo_4
urban biome
env_biome
animal-associated habitat
env_feature
intestine environment
env_material
host-associated
env_package
41941.11479.RATCECUM.NY.00077E8197
full_ids_16s
75
generation
TRUE
genotyped
USA:NY:Buffalo
geo_loc_name
USA
geographic location (country and/or sea)
97
glucose_at_dissection
114
glucose_at_weaning
mg_dl
glucose_units
no
has_dupl_16s
185.77708
host_age
days
host_age_units
UBERON:gastro-intestinal system
host_body_habitat
UBERON:lumen of gut
host_body_product
UBERON:cecum
host_body_site
rat
host_common_name
not provided
host_life_stage
Rattus norvegicus
host_scientific_name
male
host_sex
00077E8197
host_subject_id
10116
host_taxid
452
host_weight
g
host_weight_units
YES
in_16s_prep
42.89
latitude
cm
length_units
44
length_w_tail
22
length_wo_tail
14
litternumber
7
littersize
E8
locomotor_testing_box
-78.88
longitude
not applicable
losttransp
YES
metabolomicsed
23553
nb_seqs_16s
no dry ice when arrived; although the samples were still frozen
notes_cecum
not provided
novelty_seeking_box
rat gut metagenome
organism
77E8197
orig_name_16s
41941
otu_biom_id_16s
not provided
pavca_mi_box
box16
pavca_ny_box
NY
phenotyping_center
Baud lab, Centre for Genomic Regulation, Barcelona, Spain
physical_specimen_location
not provided
physical_specimen_remaining
11479_prep_4075_20191016-122239
prep_name_16s
Palmer_Rats
project_name_16s
4075
qiita_prep_id_16s
cecum content
qiita_sample_type
B16
reaction_time_box
11479.RATCECUM.NY.00077E8197
sample_name_16s
00077E8197
sample_name_in_metadata_16s
11479.RATCECUM.NY.00077E8197
sample_name_metabo
11479.RATCECUM.NY.00077E8197
sample_name_mg
rat cecum content
sample_type
rat gut metagenome
scientific_name
YES
sequenced_16s
YES
sequenced_mg
4/26/16
shipment_to_phenotyping_center_date
HSM01905
sire
S8
social_reinforcement_box
NY
study
17.15
time_elapsed_removefood_dissection
17.05
time_elapsed_removefood_measure
11479.RATCECUM.NY.00077E8197
title
Genome-wide mapping of gene-microbiome interaction: implication in behavior and effect on microbiome and metabolome
title
not provided
tn_cage
not provided
tn_track
00077E8197
tube_id
FALSE
unknown_rat
15-148-217
weaning_cagecard
3-B7
weaning_cagelocation
630
weaning_roomnumber
NY-B07-7
weaning_shippingbox
F
weaning_suite
41
weight_at_weaning