2025-12-17
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28348703
SRA accession
qiita_sid_11479:11479.000792A1CF
Submitter Id
000792A1CF
anonymized_name
FALSE
bad_rat
Batch10
batch
not applicable
batchnumber
CC00201392
cage
3
cage_density
not provided
ccc_box
TN-CECUM-086
cecum_box
000792A1CF
clean_ids_16s
2017-06-29
collection date
2017-06-29
collection_date
2017-06-29 15:57:00
collection_timestamp
black
color
11479_prep_7783_20191016-101120_11479.000792A1CF
compound_name_16s
USA
country
not provided
crf_mi_box
not provided
crf_ny_box
00077E91EE
dam
2017-06-29 15:57:00
datetime_dissected
not provided
datetime_fasting_started
not provided
datetime_glucose_measured_at_dissection
175551
deblur_biom_id
175551.11479.000792A1CF
deblur_rooname
not provided
delay_discounting_box
cecum; Heterogeneous Stock rat; University of Tennessee Health Science Center
description
TRUE
dna_extracted
2017-04-25
dob
2017-05-16
dow
NA
duplicated_16s
LT
earpunchlcn
253
elevation
Host-associated
empo_1
Animal (non-saline)
empo_2
Animal proximal gut (non-saline)
empo_3
Animal proximal gut (non-saline)
empo_4
urban biome
env_biome
animal-associated habitat
env_feature
intestine environment
env_material
host-associated
env_package
79794.11479.000792A1CF
full_ids_16s
not provided
generation
TRUE
genotyped
USA:TN:Memphis
geo_loc_name
USA
geographic location (country and/or sea)
not provided
glucose_at_dissection
not provided
glucose_at_weaning
mg_dl
glucose_units
no
has_dupl_16s
65.91458
host_age
days
host_age_units
UBERON:gastro-intestinal system
host_body_habitat
UBERON:lumen of gut
host_body_product
UBERON:cecum
host_body_site
rat
host_common_name
not provided
host_life_stage
Rattus norvegicus
host_scientific_name
male
host_sex
000792A1CF
host_subject_id
10116
host_taxid
234
host_weight
g
host_weight_units
YES
in_16s_prep
35.05
latitude
cm
length_units
36
length_w_tail
19
length_wo_tail
not provided
litternumber
12
littersize
not provided
locomotor_testing_box
-89.98
longitude
not applicable
losttransp
NO
metabolomicsed
27956
nb_seqs_16s
not_thawed
notes_cecum
not provided
novelty_seeking_box
rat gut metagenome
organism
000792A1CF
orig_name_16s
79794
otu_biom_id_16s
not provided
pavca_mi_box
not provided
pavca_ny_box
TN
phenotyping_center
Baud lab, Centre for Genomic Regulation, Barcelona, Spain
physical_specimen_location
not provided
physical_specimen_remaining
11479_prep_7783_20191016-101120
prep_name_16s
Palmer Rats 2019
project_name_16s
7783
qiita_prep_id_16s
cecum content
qiita_sample_type
not provided
reaction_time_box
11479.000792A1CF
sample_name_16s
000792A1CF
sample_name_in_metadata_16s
not applicable
sample_name_metabo
not applicable
sample_name_mg
rat cecum content
sample_type
rat gut metagenome
scientific_name
YES
sequenced_16s
NO
sequenced_mg
not provided
shipment_to_phenotyping_center_date
00077E8DEE
sire
not provided
social_reinforcement_box
TN_behavior
study
not provided
time_elapsed_removefood_dissection
not provided
time_elapsed_removefood_measure
11479.000792A1CF
title
Genome-wide mapping of gene-microbiome interaction: implication in behavior and effect on microbiome and metabolome
title
CC00201392
tn_cage
behavior
tn_track
000792A1CF
tube_id
FALSE
unknown_rat
CC00196395
weaning_cagecard
not provided
weaning_cagelocation
not provided
weaning_roomnumber
not provided
weaning_shippingbox
TSRB155
weaning_suite
not provided
weight_at_weaning