2025-12-17
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28347512
SRA accession
qiita_sid_11479:11479.00077E846B
Submitter Id
00077E846B
anonymized_name
FALSE
bad_rat
Batch11
batch
not applicable
batchnumber
L-46
cage
2
cage_density
not provided
ccc_box
NY-CC62
cecum_box
00077E846B
clean_ids_16s
2017-09-28
collection date
2017-09-28
collection_date
2017-09-28 12:52:00
collection_timestamp
brown
color
11479_prep_6827_20191016-101102_11479.00077E846B
compound_name_16s
USA
country
not provided
crf_mi_box
box2
crf_ny_box
HSF02431
dam
2017-09-28 12:52:00
datetime_dissected
2017-09-27 21:40:00
datetime_fasting_started
9/28/17 12:19
datetime_glucose_measured_at_dissection
175549
deblur_biom_id
175549.11479.00077E846B
deblur_rooname
C9
delay_discounting_box
cecum; Heterogeneous Stock rat; University of New York
description
TRUE
dna_extracted
2017-03-20
dob
2017-04-10
dow
NA
duplicated_16s
LTRT
earpunchlcn
600
elevation
Host-associated
empo_1
Animal (non-saline)
empo_2
Animal proximal gut (non-saline)
empo_3
Animal proximal gut (non-saline)
empo_4
urban biome
env_biome
animal-associated habitat
env_feature
intestine environment
env_material
host-associated
env_package
72564.11479.00077E846B
full_ids_16s
80
generation
TRUE
genotyped
USA:NY:Buffalo
geo_loc_name
USA
geographic location (country and/or sea)
73
glucose_at_dissection
108
glucose_at_weaning
mg_dl
glucose_units
no
has_dupl_16s
192.78611
host_age
days
host_age_units
UBERON:gastro-intestinal system
host_body_habitat
UBERON:lumen of gut
host_body_product
UBERON:cecum
host_body_site
rat
host_common_name
not provided
host_life_stage
Rattus norvegicus
host_scientific_name
female
host_sex
00077E846B
host_subject_id
10116
host_taxid
257
host_weight
g
host_weight_units
YES
in_16s_prep
42.89
latitude
cm
length_units
40.5
length_w_tail
21
length_wo_tail
2
litternumber
7
littersize
E1
locomotor_testing_box
-78.88
longitude
not applicable
losttransp
NO
metabolomicsed
27908
nb_seqs_16s
not_thawed
notes_cecum
not provided
novelty_seeking_box
rat gut metagenome
organism
00077E846B
orig_name_16s
72564
otu_biom_id_16s
not provided
pavca_mi_box
box2
pavca_ny_box
NY
phenotyping_center
Baud lab, Centre for Genomic Regulation, Barcelona, Spain
physical_specimen_location
not provided
physical_specimen_remaining
11479_prep_6827_20191016-101102
prep_name_16s
Palmer Rats Winter2018
project_name_16s
6827
qiita_prep_id_16s
cecum content
qiita_sample_type
B1
reaction_time_box
11479.00077E846B
sample_name_16s
00077E846B
sample_name_in_metadata_16s
not applicable
sample_name_metabo
not applicable
sample_name_mg
rat cecum content
sample_type
rat gut metagenome
scientific_name
YES
sequenced_16s
NO
sequenced_mg
4/25/17
shipment_to_phenotyping_center_date
HSM02437
sire
S7
social_reinforcement_box
NY
study
15.2
time_elapsed_removefood_dissection
14.65
time_elapsed_removefood_measure
11479.00077E846B
title
Genome-wide mapping of gene-microbiome interaction: implication in behavior and effect on microbiome and metabolome
title
not provided
tn_cage
not provided
tn_track
00077E846B
tube_id
FALSE
unknown_rat
16-149-406
weaning_cagecard
3-C7
weaning_cagelocation
630
weaning_roomnumber
NY-B11-13
weaning_shippingbox
F
weaning_suite
49
weight_at_weaning