2025-12-17
ENA first public
ERC000011
ENA-CHECKLIST
UCSDMI
INSDC center name
public
INSDC status
ERS28345844
SRA accession
qiita_sid_11479:11479.RATCECUM.MI.00077E7C41
Submitter Id
RATCECUM.MI.00077E7C41
anonymized_name
FALSE
bad_rat
Batch09
batch
not applicable
batchnumber
B09-18
cage
3
cage_density
box10
ccc_box
MI-B09-CC2
cecum_box
00077E7C41
clean_ids_16s
2016-04-28
collection date
2016-04-28
collection_date
2016-04-28 15:02:00
collection_timestamp
black
color
11479_prep_4078_20191016-101009_11479.RATCECUM.MI.00077E7C41
compound_name_16s
USA
country
crf_MI_box13
crf_mi_box
not provided
crf_ny_box
HSF02102
dam
2016-04-28 15:02:00
datetime_dissected
2016-04-27 18:00:00
datetime_fasting_started
4/28/16 14:58
datetime_glucose_measured_at_dissection
175555
deblur_biom_id
175555.11479.RATCECUM.MI.00077E7C41
deblur_rooname
not provided
delay_discounting_box
cecum; Heterogeneous Stock rat; University of Michigan
description
TRUE
dna_extracted
2016-01-31
dob
2016-02-22
dow
NA
duplicated_16s
LM
earpunchlcn
840
elevation
Host-associated
empo_1
Animal (non-saline)
empo_2
Animal proximal gut (non-saline)
empo_3
Animal proximal gut (non-saline)
empo_4
urban biome
env_biome
animal-associated habitat
env_feature
intestine environment
env_material
host-associated
env_package
41937.11479.RATCECUM.MI.00077E7C41
full_ids_16s
77
generation
TRUE
genotyped
USA:MI:Ann Arbor
geo_loc_name
USA
geographic location (country and/or sea)
98
glucose_at_dissection
105
glucose_at_weaning
mg_dl
glucose_units
no
has_dupl_16s
88.87639
host_age
days
host_age_units
UBERON:gastro-intestinal system
host_body_habitat
UBERON:lumen of gut
host_body_product
UBERON:cecum
host_body_site
rat
host_common_name
not provided
host_life_stage
Rattus norvegicus
host_scientific_name
female
host_sex
00077E7C41
host_subject_id
10116
host_taxid
190
host_weight
g
host_weight_units
YES
in_16s_prep
42.28
latitude
cm
length_units
35
length_w_tail
19
length_wo_tail
2
litternumber
12
littersize
not provided
locomotor_testing_box
-83.74
longitude
not applicable
losttransp
YES
metabolomicsed
27639
nb_seqs_16s
not_thawed
notes_cecum
box10
novelty_seeking_box
rat gut metagenome
organism
00077E7C41
orig_name_16s
41937
otu_biom_id_16s
box13
pavca_mi_box
not provided
pavca_ny_box
MI
phenotyping_center
Baud lab, Centre for Genomic Regulation, Barcelona, Spain
physical_specimen_location
not provided
physical_specimen_remaining
11479_prep_4078_20191016-101009
prep_name_16s
Palmer_Rats
project_name_16s
4078
qiita_prep_id_16s
cecum content
qiita_sample_type
not provided
reaction_time_box
11479.RATCECUM.MI.00077E7C41
sample_name_16s
00077E7C41
sample_name_in_metadata_16s
11479.RATCECUM.MI.00077E7C41
sample_name_metabo
not applicable
sample_name_mg
rat cecum content
sample_type
rat gut metagenome
scientific_name
YES
sequenced_16s
NO
sequenced_mg
3/8/16
shipment_to_phenotyping_center_date
HSM02140
sire
not provided
social_reinforcement_box
MI
study
21.03333333
time_elapsed_removefood_dissection
20.96666667
time_elapsed_removefood_measure
11479.RATCECUM.MI.00077E7C41
title
Genome-wide mapping of gene-microbiome interaction: implication in behavior and effect on microbiome and metabolome
title
not provided
tn_cage
not provided
tn_track
00077E7C41
tube_id
FALSE
unknown_rat
15-148-261
weaning_cagecard
3-B7
weaning_cagelocation
630
weaning_roomnumber
MI-B09-7
weaning_shippingbox
F
weaning_suite
43
weight_at_weaning