characteristics.text: SAMN07999364
characteristics.characteristic: External Id
characteristics.text: INRA
characteristics.characteristic: INSDC center name
characteristics.text: 2017-11-08T00:00:00Z
characteristics.characteristic: INSDC first public
characteristics.text: 2025-12-05T12:42:15.843Z
characteristics.characteristic: INSDC last update
characteristics.text: SRS4262111
characteristics.characteristic: INSDC secondary accession
characteristics.text: live
characteristics.characteristic: INSDC status
characteristics.text: Microbe, viral or environmental
characteristics.characteristic: NCBI submission model
characteristics.text: Microbe.1.0
characteristics.characteristic: NCBI submission package
characteristics.text: SRS4262111
characteristics.characteristic: SRA accession
characteristics.text: CFBP 8356
characteristics.characteristic: biomaterial_provider
characteristics.text: Legendre B
characteristics.characteristic: collected by
characteristics.text: 2015
characteristics.characteristic: collection date
characteristics.text: CIRM-CFBP:8356
characteristics.characteristic: culture_collection
characteristics.text: Xylella fastidiosa is a bacterial plant pathogen disseminated across the Americas, while its presence is currently described in several European countries. Seven strains, available at the CIRM-CFBP (http://www.angers-nantes.inra.fr/cfbp/) were selected. Six strains were isolated in the USA from Vitis rotundifolia (CFBP7969), Vitis vinifera (CFBP 7970), Vitis SP (CFBP8351), Prunus dulcis (CFBP 8071) and Ambrosia artemifolia (CFBP 8082) and belong to X. fastidiosa subsp. fastidiosa. One strain was isolated in the USA from Vinca sp. (CFBP 8078) and belongs to X. fastidiosa subsp. multiplex. One strain was isolated from a coffee plant imported from the Costa Rica and intercepted in France (CFBP 8356) and belongs to X. fastidiosa subsp. sandyi. The taxonomic assignation to a subpecies was based on multiprimer PCR (Hernandez-Martinez et al., 2006), MLST scheme using 7 housekeeping genes (Yuan et al., 2010) and whole-genome sequencing unsing the Illumina Mi-Seq technology.
characteristics.characteristic: description
characteristics.text: France: intercepted coffee plant
characteristics.characteristic: geo loc name
characteristics.text: Coffea arabica
characteristics.characteristic: host
characteristics.text: Xylella fastidiosa subsp. sandyi
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_671135
characteristics.characteristic: organism
characteristics.text: cell culture
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/BTO_0000214
characteristics.characteristic: sample type
characteristics.text: CFBP 8356
characteristics.characteristic: strain
characteristics.text: sandyi
characteristics.characteristic: sub species
characteristics.text: Microbe sample from Xylella fastidiosa subsp. sandyi CFBP8356
characteristics.characteristic: title