SAMN52587453
External Id
University of Pennsylvania
INSDC center name
2025-10-09T00:00:00Z
INSDC first public
2025-12-18T09:56:27.734Z
INSDC last update
SRS26844858
INSDC secondary accession
live
INSDC status
MIGS.ba
NCBI submission model
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIGS.ba.host-associated.6.0
NCBI submission package
SRS26844858
SRA accession
5.16 m
altitude
2022-09-30
collection_date
Keywords: GSC:MIxS;MIGS:6.0
description
soil
env_broad_scale
root nodule
env_local_scale
topsoil
env_medium
USA: Pennsylvania
geo_loc_name
Medicago lupulina
host
47085
host_taxid
We isolated nodule microbes by surface sterilizing, crushing, and streaking on TY agar plates. We then sent the cell pellets disolved in DNA/RNA guard to Plasmidsaurus for extraction and Nanopore long-read sequencing
isol_growth_condt
39.95 N 75.19 W
lat_lon
not applicable
num_replicons
Sinorhizobium meliloti
http://purl.obolibrary.org/obo/NCBITaxon_382
organism
Chang, Chang-Yu, Terrence Topping-Brown, Jazmine L. Rud, Mccall B. Calvert, Gerardo Bencosme, and Corlett W. Wood. 2025. “Biogeographic and Genomic Signatures of Thermal Adaptation in Facultative Rhizobia.” bioRxiv. https://doi.org/10.1101/2025.01.14.632453.
ref_biomaterial
ppf-2
strain
MIGS Cultured Bacterial/Archaeal sample from Sinorhizobium meliloti
title