2025-12-25
ENA first public
ERC000011
ENA-CHECKLIST
SRM Institute of Science and Technology
INSDC center name
public
INSDC status
ERS28384634
SRA accession
Rio-PR22
Submitter Id
not collected
collection date
sorghum
common name
The present analysis was performed to report long non-coding RNAs (lncRNAs) and Novel protein-coding transcripts in sweet sorghum Rio and non-sweet inbred line PR22 using 98 RNA-Seq accessions from a previous study. We used our in-house pipeline, LncRAnalyzer [https://gitlab.com/nikhilshinde0909/LncRAnalyzer], to identify 8180 lncRNAs and 1614 NPCTs that were expressed in these two genotypes. To investigate their functional relationship with existing protein-coding genes, we performed gene co-expression analysis using the TO-GCN and WGCNA packages. These lncRNA-PCG associations highlight their possible role in stem sugar accumulation and internode development. Functional annotation of NPCTs was performed using the Trinotate pipeline. This study provides potential lncRNA and gene co-expression resources for designing targeted RNA-Seq panels to screen sorghum genotypes with enhanced sugar accumulation traits.
description
USA
geographic location (country and/or sea)
Sorghum bicolor
organism
Sorghum bicolor
scientific_name
Identified long non-coding RNAs in sweet sorghum Rio and non-sweet PR22 during develpmental stages
title