PRJEB106049
Accession
2025-12-30
ENA first public
ERC000011
ENA-CHECKLIST
3300006040
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28386258
SRA accession
SRX2838888
SRA_experiment_ID
3300006040___IMGM3300006040_BIN14
Submitter Id
MEGAHIT;0.2.0; default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
aquatic biome [ENVO:00002030]
broad-scale environmental context
2014-04-30
collection date
Plastid metagenome-assembled genome BIN14 from sand microcosm collected at USA: Columbia River, Washington. Reconstructed through metagenomic binning.
description
water [ENVO:00002006]
environmental medium
USA
geographic location (country and/or sea)
46.37228379 N
geographic location (latitude)
119.2717467 W
geographic location (longitude)
sand microcosm
isolation_source
aquatic feature [ENVO:00002236]
local environmental context
ecological metagenome
metagenomic source
BIN14
metagenomic_bin
Bacillariophyceae sp.
organism
Global plastid metagenome-assembled genome
project name
SAMN06343878
sample derived from
Bacillariophyceae sp.
scientific_name
Ochrophyceae
taxonomic_placement
Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_30-Apr-14
title