PRJEB106049
Accession
2025-12-30
ENA first public
ERC000011
ENA-CHECKLIST
3300045586
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28387130
SRA accession
SRX30468888
SRA_experiment_ID
3300045586___Ga0466449_0000349
Submitter Id
metaspades;3.14.1; default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
freshwater biome [ENVO:01001357]
broad-scale environmental context
2011-02-04
collection date
Plastid metagenome-assembled genome from river surface water collected at USA: Iowa. Reconstructed through metagenomic binning.
description
freshwater [ENVO:00002011]
environmental medium
USA
geographic location (country and/or sea)
40.7278 N
geographic location (latitude)
91.9596 W
geographic location (longitude)
river surface water
isolation_source
aquatic feature [ENVO:00002236]
local environmental context
ecological metagenome
metagenomic source
Haptophyceae sp.
organism
Global plastid metagenome-assembled genome
project name
SAMN51149030
sample derived from
Haptophyceae sp.
scientific_name
Haptophyceae
taxonomic_placement
Freshwater microbial communities from Des Moines River, Iowa, USA - NASQAN2011_265
title