PRJEB106049
Accession
2025-12-30
ENA first public
ERC000011
ENA-CHECKLIST
3300023035
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28386503
SRA accession
SRX4392076
SRA_experiment_ID
3300023035___IMGM3300023035_BIN10
Submitter Id
SPAdes;3.11.1; default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
aquatic biome [ENVO:00002030]
broad-scale environmental context
2016-05-10
collection date
Plastid metagenome-assembled genome BIN10 from leaf litter collected at USA: California. Reconstructed through metagenomic binning.
description
water [ENVO:00002006]
environmental medium
USA
geographic location (country and/or sea)
40.2198 N
geographic location (latitude)
122.9842 W
geographic location (longitude)
leaf litter
isolation_source
aquatic feature [ENVO:00002236]
local environmental context
ecological metagenome
metagenomic source
BIN10
metagenomic_bin
Streptophyta sp.
organism
Global plastid metagenome-assembled genome
project name
SAMN09201623
sample derived from
Streptophyta sp.
scientific_name
Streptophyceae
taxonomic_placement
Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-273
title