PRJEB106049
Accession
2025-12-30
ENA first public
ERC000011
ENA-CHECKLIST
3300024123
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28386537
SRA accession
SRX4456987
SRA_experiment_ID
3300024123___IMGM3300024123_BIN12
Submitter Id
SPAdes;3.11.1; default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
aquatic biome [ENVO:00002030]
broad-scale environmental context
2015-09-22
collection date
Plastid metagenome-assembled genome BIN12 from Spruce roots collected at Czech Republic: South Bohemian Region. Reconstructed through metagenomic binning.
description
water [ENVO:00002006]
environmental medium
Czech Republic
geographic location (country and/or sea)
49.0448 N
geographic location (latitude)
13.618 E
geographic location (longitude)
Spruce roots
isolation_source
aquatic feature [ENVO:00002236]
local environmental context
ecological metagenome
metagenomic source
BIN12
metagenomic_bin
Streptophyta sp.
organism
Global plastid metagenome-assembled genome
project name
SAMN09202374
sample derived from
Streptophyta sp.
scientific_name
Streptophyceae
taxonomic_placement
Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU5
title