PRJEB106049
Accession
2025-12-30
ENA first public
ERC000011
ENA-CHECKLIST
3300001275
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28386231
SRA accession
3300001275___IMGM3300001275_BIN39
Submitter Id
SOAPdenovo;1.05;Newbler;2.8;Minimus2; default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
freshwater biome [ENVO:01001357]
broad-scale environmental context
2010-10-29
collection date
Plastid metagenome-assembled genome BIN39 from Lake Mendota, Madison, WI collected at USA: Lake Mendota, Madison, Wisconsin. Reconstructed through metagenomic binning.
description
freshwater [ENVO:00002011]
environmental medium
USA
geographic location (country and/or sea)
43.098333 N
geographic location (latitude)
89.405278 W
geographic location (longitude)
Lake Mendota, Madison, WI
isolation_source
lake [ENVO:00000020]
local environmental context
ecological metagenome
metagenomic source
BIN39
metagenomic_bin
Bacillariophyceae sp.
organism
Global plastid metagenome-assembled genome
project name
SAMN05518290
sample derived from
Bacillariophyceae sp.
scientific_name
Ochrophyceae
taxonomic_placement
Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion v3 (version 3)
title