PRJEB106049
Accession
2025-12-30
ENA first public
ERC000011
ENA-CHECKLIST
3300025316
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28386562
SRA accession
SRX2839455
SRA_experiment_ID
3300025316___IMGM3300025316_BIN264
Submitter Id
SPAdes;3.11.1; default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
freshwater biome [ENVO:01001357]
broad-scale environmental context
2011-09-19
collection date
Plastid metagenome-assembled genome BIN264 from freshwater lake hypolimnion collected at Finland: Lake Alinen Mustajarvi. Reconstructed through metagenomic binning.
description
freshwater [ENVO:00002011]
environmental medium
Finland
geographic location (country and/or sea)
61.5637 N
geographic location (latitude)
22.044 E
geographic location (longitude)
freshwater lake hypolimnion
isolation_source
lake [ENVO:00000020]
local environmental context
ecological metagenome
metagenomic source
BIN264
metagenomic_bin
Raphidophyceae sp.
organism
Global plastid metagenome-assembled genome
project name
SAMN06343861
sample derived from
Raphidophyceae sp.
scientific_name
Ochrophyceae
taxonomic_placement
Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG (SPAdes) (version 3)
title