PRJEB106049
Accession
2025-12-30
ENA first public
ERC000011
ENA-CHECKLIST
3300000369
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28386229
SRA accession
SRX2021642
SRA_experiment_ID
3300000369___IMGM3300000369_BIN38
Submitter Id
MEGAHIT;0.2.0; default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
marine biome [ENVO:00000447]
broad-scale environmental context
2011-12-01
collection date
Plastid metagenome-assembled genome BIN38 from Eden Landing Ponds, San Francisco, CA, USA collected at USA: Eden Landing Ponds, San Francisco, California. Reconstructed through metagenomic binning.
description
sea water [ENVO:00002149]
environmental medium
USA
geographic location (country and/or sea)
37.568817 N
geographic location (latitude)
122.10315 W
geographic location (longitude)
Eden Landing Ponds, San Francisco, CA, USA
isolation_source
aquatic feature [ENVO:00002236]
local environmental context
ecological metagenome
metagenomic source
BIN38
metagenomic_bin
Bacillariophyceae sp.
organism
Global plastid metagenome-assembled genome
project name
SAMN05518229
sample derived from
Bacillariophyceae sp.
scientific_name
Ochrophyceae
taxonomic_placement
Marine microbial community from Union City, CA, USA - Pond 2C Liquid 3
title