PRJEB106049
Accession
2025-12-30
ENA first public
ERC000011
ENA-CHECKLIST
3300027196
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28386691
SRA accession
SRX2753548
SRA_experiment_ID
3300027196___Ga0208438_1000338
Submitter Id
SPAdes;3.11.1; default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
marine biome [ENVO:00000447]
broad-scale environmental context
2014-04-29
collection date
Plastid metagenome-assembled genome from Columbia River Estuary collected at USA: Columbia River Estuary. Reconstructed through metagenomic binning.
description
estuarine water [ENVO:01000301]
environmental medium
USA
geographic location (country and/or sea)
46.2 N
geographic location (latitude)
123.94 W
geographic location (longitude)
Columbia River Estuary
isolation_source
intertidal zone [ENVO:00000316]
local environmental context
ecological metagenome
metagenomic source
Dictyochophyceae sp.
organism
Global plastid metagenome-assembled genome
project name
SAMN06266256
sample derived from
Dictyochophyceae sp.
scientific_name
Ochrophyceae
taxonomic_placement
Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 (SPAdes) (version 2)
title