PRJEB106049
Accession
2025-12-30
ENA first public
ERC000011
ENA-CHECKLIST
3300020586
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28386387
SRA accession
SRX4002556
SRA_experiment_ID
3300020586___IMGM3300020586_BIN5
Submitter Id
SPAdes;3.10.1; default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
aquatic biome [ENVO:00002030]
broad-scale environmental context
2017-04-22
collection date
Plastid metagenome-assembled genome BIN5 from Pinus contorta foliage collected at USA: California. Reconstructed through metagenomic binning.
description
water [ENVO:00002006]
environmental medium
USA
geographic location (country and/or sea)
37.6622 N
geographic location (latitude)
119.6197 W
geographic location (longitude)
Pinus contorta foliage
isolation_source
aquatic feature [ENVO:00002236]
local environmental context
ecological metagenome
metagenomic source
BIN5
metagenomic_bin
Streptophyta sp.
organism
Global plastid metagenome-assembled genome
project name
SAMN08778105
sample derived from
Streptophyta sp.
scientific_name
Streptophyceae
taxonomic_placement
Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_3
title