SAMN45203556
External Id
USGS Coral Microbial Ecology - Kellogg Lab
INSDC center name
2026-01-01T00:50:58.343Z
INSDC first public
2026-01-01T00:50:58.343Z
INSDC last update
SRS23461809
INSDC secondary accession
live
INSDC status
MIGS/MIMS/MIMARKS.microbial
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.microbial.6.0
NCBI submission package
SRS23461809
SRA accession
2023-07-19
collection_date
ckellogg@usgs.gov
contact_email
Christina Kellogg
contact_name
63 meters
depth
Total DNA from the biofilm of an aragonite settling plate was extracted using Qiagen PowerBiofilm kit. The V4 region of the 16S DNA gene were amplified using primers 515F/806R and sequenced on a MiSeqsystem with v2 chemistry to obtain paired-end 250-bp reads.
description
not applicable
elev
Seafloor
env_broad_scale
Mesophotic zone
env_local_scale
ocean
env_medium
USA: Gulf of Mexico
geo_loc_name
29.849757 N 87.285032 W
lat_lon
metagenome
http://purl.obolibrary.org/obo/NCBITaxon_256318
organism
Submerged in RNAlater and frozen at -20 degrees Celsius.
samp_mat_process
St. Petersburg Coastal and Marine Science Center, Coral Microbial Ecology Laboratory
samp_store_loc
-20 degrees Celsius
samp_store_temp
9
sample_number
Bacterial 16S community from the biofilm of a aragonite settling plate.
title