SAMN45203557
External Id
USGS Coral Microbial Ecology - Kellogg Lab
INSDC center name
2026-01-01T00:50:58.353Z
INSDC first public
2026-01-01T00:50:58.353Z
INSDC last update
SRS23461810
INSDC secondary accession
live
INSDC status
MIGS/MIMS/MIMARKS.microbial
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.microbial.6.0
NCBI submission package
SRS23461810
SRA accession
2023-07-21
collection_date
ckellogg@usgs.gov
contact_email
Christina Kellogg
contact_name
48.2 meters
depth
Total DNA from the biofilm of a limestone settling plate was extracted using Qiagen PowerBiofilm kit. The V4 region of the 16S DNA gene were amplified using primers 515F/806R and sequenced on a MiSeqsystem with v2 chemistry to obtain paired-end 250-bp reads.
description
not applicable
elev
Seafloor
env_broad_scale
Mesophotic zone
env_local_scale
ocean
env_medium
USA: Gulf of Mexico
geo_loc_name
30.123441 N 86.86902 W
lat_lon
metagenome
http://purl.obolibrary.org/obo/NCBITaxon_256318
organism
Submerged in RNAlater and frozen at -20 degrees Celsius.
samp_mat_process
St. Petersburg Coastal and Marine Science Center, Coral Microbial Ecology Laboratory
samp_store_loc
-20 degrees Celsius
samp_store_temp
10
sample_number
Bacterial 16S community from the biofilm of a limestone settling plate.
title