SAMN52399958
External Id
Woods Hole Oceanographic Instituion
INSDC center name
2026-01-01T00:58:03.250Z
INSDC first public
2026-01-01T00:58:03.250Z
INSDC last update
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
latitude and longitude
altitude
Joan Bernhard
biomaterial_provider
Joan Bernhard
collected_by
2021-07-10
collection_date
not applicable
culture_collection
571m
depth
We report the metabolic pathways inferred from gene expression analyses of an extant representative of primitive benthic foraminifera, preserved in its deep water, anoxic, sulfidic seafloor habitat. Our study focuses on a saccamminid foraminifer inhabiting the bathyal seafloor under permanently low oxygen conditions. Using both transcriptomic and metatranscriptomic approaches, we reconstructed the organism's energy metabolism and cellular adaptations to extreme anoxia, providing insights into early eukaryotic survival strategies under oxygen-limited environments.
description
Deep sea
env_broad_scale
USA: Santa Barbra Basin, California
geo_loc_name
whole cell
host_tissue_sampled
Joan Bernhard
identified_by
sediment sample
isolation_source
Bernhard lab
lab_host
saccamminid
label
34.29795 N 120.06036 W
lat_lon
Unknown
mating_type
Saccamminidae sp.
http://purl.obolibrary.org/obo/NCBITaxon_2562782
organism
zero
passage_history
300-500 micrometer
samp_size
single cell
sample_type
unknown
serotype
unkown
serovar
undescribed
specimen_voucher
EUKARYOTIC
strain
4C
temp
eukaryotic sample SBB saccamminid isolated from SBB
title