SAMN45203289
External Id
USGS Coral Microbial Ecology - Kellogg Lab
INSDC center name
2026-01-01T00:59:03.823Z
INSDC first public
2026-01-01T00:59:03.823Z
INSDC last update
SRS23461566
INSDC secondary accession
live
INSDC status
MIGS/MIMS/MIMARKS.microbial
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.microbial.6.0
NCBI submission package
SRS23461566
SRA accession
2013-05
collection_date
ckellogg@usgs.gov
contact_email
Christina Kellogg
contact_name
600 meters
depth
DNA was extracted using a Qiagen DNeasy extraction kit, and was sequenced on a 454 pyrosequencing platform using GS FLX Titanium chemistry using primers 563F/926R to target the V4V5 region of the 16S rRNA gene.
description
not applicable
elev
Seafloor
env_broad_scale
dysphotic zone
env_local_scale
ocean
env_medium
Atlantic Ocean: Baltimore Canyon
geo_loc_name
38.15010100 N 73.84791600 W
lat_lon
metagenome
http://purl.obolibrary.org/obo/NCBITaxon_256318
organism
Submerged in RNAlater, stored at 4 degrees Celsius (°C) overnight, then frozen at -20°C.
samp_mat_process
-20 degrees Celsius
samp_store_temp
12
sample_number
Bacterial 16S community from biofilms formed on a steel settling plate in the Atlantic Ocean, at a depth of approximately 600 meters.
title