Yes
16S recovered
Infernal: 1.1.5
16S recovery software
2026-01-05
ENA first public
ERC000050
ENA-CHECKLIST
Tree of Life Programme
INSDC center name
public
INSDC status
minimap2: 2.29-r1283; coverm: 0.7.0
MAG coverage software
ERS28439008
SRA accession
1b0d8e13-a337-477a-acad-c09a95d7def3
Submitter Id
Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly quality
metamdbg: 1.2
assembly software
graph; coverage; hic-mapping
binning parameters
dastool: 1.1.7; bin3c: 0.3.3; metator: 1.3.10; maxbin2: 2.2.7; metabat2: 2.17
binning software
aquatic biome
broad-scale environmental context
2024-03-01
collection date
97.75
%
completeness score
checkm2: 1.1.0
completeness software
0.16
%
contamination score
10
m
depth
adult sponge tissue
environmental medium
Australia
geographic location (country and/or sea)
-33.99
DD
geographic location (latitude)
151.23
DD
geographic location (longitude)
Haplosclerida sp. GHC0000330
host scientific name
3378732
host taxid
metagenome-assembled genome
investigation type
Sponge: Haplosclerida sp. GHC0000330
isolation_source
marine biome
local environmental context
sponge metagenome
metagenomic source
22
number of standard tRNAs extracted
Synechococcus sp.
organism
ASG
project name
SAMEA120903507
sample derived from
Synechococcus sp.
scientific_name
PacBio Revio; Illumina NovaSeqX; Illumina NovaSeqX
sequencing method
tRNAscan-SE: 2.0.12
tRNA extraction software
GTDB-Tk: 2.5.2; GTDB DB: r226
taxonomic classification
taxonomic classification defined by topology and ANI
taxonomic identity marker
1b0d8e13-a337-477a-acad-c09a95d7def3-asg-odHalSpea1_metamdbg_dastool_24
title
odHalSpea1.Synechococcus_sp_1
tolid