PRJEB106049
Accession
2026-01-07
ENA first public
ERC000011
ENA-CHECKLIST
d__Bacteria;p__Cyanobacteriota;c__Vampirovibrionia;o__Vampirovibrionales;f__JAJTHC01;g__;s__
GTDBK_classification
3300042560
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28402726
SRA accession
SRX23160984
SRA_experimentID
ERP187154
Secondary Accession
IMGM3300042560_BIN233
Submitter Id
metaspades;3.14.1;default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
freshwater biome [ENVO:01001357]
broad-scale environmental context
2013-09-16
collection date
65.77%
completeness score
CheckM2
completeness software
0.61%
contamination score
Cyanobacteriota metagenome-assembled genome BIN233 from lake water from pelagic integrated epilimnion zone collected at USA: TYMEFLIES-ME16Sep2013-rr0656. Reconstructed through metagenomic binning.
description
freshwater [ENVO:00002011]
environmental medium
USA
geographic location (country and/or sea)
43.0995 N
geographic location (latitude)
89.4045 W
geographic location (longitude)
lake water from pelagic integrated epilimnion zone
isolation_source
lake [ENVO:00000020]
local environmental context
ecological metagenome
metagenomic source
BIN233
metagenomic_bin
uncultured bacterium
organism
SAMN18246916
sample derived from
uncultured bacterium
scientific_name
Illumina NovaSeq S4
sequencing method
Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2013-rr0656
title