PRJEB106049
Accession
2026-01-07
ENA first public
ERC000011
ENA-CHECKLIST
d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_D;s__Synechococcus_D sp009914645
GTDBK_classification
3300019426
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28403019
SRA accession
SRX3985611
SRA_experimentID
ERP187154
Secondary Accession
IMGS3300019426_BIN1
Submitter Id
SPAdes;3.10.1;default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
freshwater biome [ENVO:01001357]
broad-scale environmental context
2016-06-22
collection date
99.88%
completeness score
CheckM2
completeness software
0.04%
contamination score
Cyanobacteriota metagenome-assembled genome BIN1 from lake water collected at USA: Synechococcus bacterium JGI_UCMI16005. Reconstructed through metagenomic binning.
description
freshwater [ENVO:00002011]
environmental medium
USA
geographic location (country and/or sea)
43.5997 N
geographic location (latitude)
86.9178 W
geographic location (longitude)
lake water
isolation_source
lake [ENVO:00000020]
local environmental context
ecological metagenome
metagenomic source
BIN1
metagenomic_bin
uncultured cyanobacterium
organism
SAMN08777047
sample derived from
uncultured cyanobacterium
scientific_name
Illumina NextSeq-HO
sequencing method
Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16005
title