PRJEB106049
Accession
2026-01-07
ENA first public
ERC000011
ENA-CHECKLIST
d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Oscillatoriaceae;g__Oscillatoria;s__
GTDBK_classification
3300045113
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28402870
SRA accession
SRX30948907
SRA_experimentID
ERP187154
Secondary Accession
IMGM3300045113_BIN38
Submitter Id
metaspades;3.14.1;default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
anthropogenic terrestrial biome [ENVO:01000219]
broad-scale environmental context
2019-08-26
collection date
91.69%
completeness score
CheckM2
completeness software
0.26%
contamination score
Cyanobacteriota metagenome-assembled genome BIN38 from sediment from irrigation canal collected at USA: MERB-8-26-19. Reconstructed through metagenomic binning.
description
material entity [BFO:0000040]
environmental medium
USA
geographic location (country and/or sea)
37.2727 N
geographic location (latitude)
120.56 W
geographic location (longitude)
sediment from irrigation canal
isolation_source
human construction [ENVO:00000070]
local environmental context
ecological metagenome
metagenomic source
BIN38
metagenomic_bin
uncultured cyanobacterium
organism
SAMN52642595
sample derived from
uncultured cyanobacterium
scientific_name
Illumina NovaSeq S4
sequencing method
Sediment microbial communities from irrigation canal in Merced County, California, USA - MERB-8-26-19
title