PRJEB106049
Accession
2026-01-07
ENA first public
ERC000011
ENA-CHECKLIST
d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Sodalinema;s__
GTDBK_classification
3300000425
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28402798
SRA accession
SRX2021645
SRA_experimentID
ERP187154
Secondary Accession
IMGM3300000425_BIN39
Submitter Id
missing;default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
marine biome [ENVO:00000447]
broad-scale environmental context
2011-12-01
collection date
79.63%
completeness score
CheckM2
completeness software
0.25%
contamination score
Cyanobacteriota metagenome-assembled genome BIN39 from Eden Landing Ponds, San Francisco, CA, USA collected at USA: Pond 2C Liquid 2. Reconstructed through metagenomic binning.
description
sea water [ENVO:00002149]
environmental medium
USA
geographic location (country and/or sea)
37.569017 N
geographic location (latitude)
122.102433 W
geographic location (longitude)
Eden Landing Ponds, San Francisco, CA, USA
isolation_source
marine water body [ENVO:00001999]
local environmental context
ecological metagenome
metagenomic source
BIN39
metagenomic_bin
uncultured cyanobacterium
organism
SAMN05518571
sample derived from
uncultured cyanobacterium
scientific_name
Illumina HiSeq 2000
sequencing method
Marine microbial community from Union City, CA, USA - Pond 2C Liquid 2
title