PRJEB106049
Accession
2026-01-07
ENA first public
ERC000011
ENA-CHECKLIST
d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Coleofasciculaceae;g__Caldora;s__
GTDBK_classification
3300027607
IMG_genome_ID
JGI
INSDC center name
public
INSDC status
ERS28402780
SRA accession
SRX8048359, SRX8048358
SRA_experimentID
ERP187154
Secondary Accession
IMGM3300027607_BIN542
Submitter Id
SPAdes;3.11.1;default parameters
assembly software
--minContig 5000, --minClsSize 20000, --cvExt; tetranucleotide frequency for composition; coverage from BAM files
binning parameters
MetaBAT 2
binning software
marine biome [ENVO:00000447]
broad-scale environmental context
2010-02-17
collection date
98.19%
completeness score
CheckM2
completeness software
1.25%
contamination score
Cyanobacteriota metagenome-assembled genome BIN542 from Panama canal collected at Panama: species 1 Leptolyngbya sp. (SPAdes). Reconstructed through metagenomic binning.
description
sea water [ENVO:00002149]
environmental medium
Panama
geographic location (country and/or sea)
9.28 N
geographic location (latitude)
79.97 W
geographic location (longitude)
Panama canal
isolation_source
marine water body [ENVO:00001999]
local environmental context
ecological metagenome
metagenomic source
BIN542
metagenomic_bin
uncultured cyanobacterium
organism
SAMN13385564
sample derived from
uncultured cyanobacterium
scientific_name
Illumina HiSeq 2500
sequencing method
Marine cyanobacterial communities from Panama - species 1 Leptolyngbya sp. (SPAdes)
title