domain: self.USDA Transcriptome

status: PUBLIC

unit: YYYY-MM

characteristic: birth date

text: Western University of Health Sciences

characteristic: birth location

text: Chicken crossbreed

characteristic: breed

text: Avian Diesease and Oncology Laboratory (ADOL) F1 of Line 6_3 x Line 7_2

characteristic: genetic line

text: normal

characteristic: health status

text: organism

characteristic: material

text: gallus gallus

characteristic: organism

text: FAANG

characteristic: project

text: adults

characteristic: sample description

characteristic: sample name

text: female

characteristic: sex

text: Transcriptome of chicken intestinal tissues, immune tissue and cells, and reproductive tissues. Intestinal tissues include the jejunum, ileum, and proximal cecum. Immune tissues include the thymus and bursa. Immune cells include peripheral blood monocytes, peripheral blood B cells, and lung macrophages. Reproductive tissues include the ovary.

characteristic: submission description

text: USDA-FAANG-Chicken

characteristic: submission title

type: derived from

Name: United States Department of Agriculture, National Institute of Food and Agriculture

Role: funder

Address: 1400 Independence Avenue, SW, MS 2201, Washington, DC 200250-2201

University of Washington

Role: institution

Address: Health Sciences K-236B, 3720 15th Avenue NE, Seattle, WA 98195

Western University of Health Sciences

Address: 309 E. 2nd Street, Pomona, CA 91766

David Hawkins

FirstName: David

LastName: Hawkins

MidInitials: RDH

Role: principal investigator

Eliah Overbey

FirstName: Eliah

LastName: Overbey

MidInitials: EGO

Role: data analyst

Lisa Griggs

FirstName: Lisa

LastName: Griggs

MidInitials: LMG

Role: technician

Paul Stewart

FirstName: Paul

LastName: Stewart

MidInitials: PS

Role: experiment performer

Pietro Catini

FirstName: Pietro

LastName: Catini

MidInitials: PC

Suzana Tkalcic

FirstName: Suzana

LastName: Tkalcic

MidInitials: ST

Role: pathologist

Theros Ng

FirstName: Theros

LastName: Ng

MidInitials: TTN

Role: experimental scientist

Yvonne Drechsler

FirstName: Yvonne

LastName: Drechsler

MidInitials: YD


text: Western University of Health Sciences

text: Chicken crossbreed

text: normal

text: organism

text: gallus gallus

text: FAANG

text: Juvenile

text: male

text: USDA-FAANG-Chicken


text: Western University of Health Sciences

text: Chicken crossbreed

text: normal

text: organism

text: gallus gallus

text: FAANG

text: Juvenile

text: male

text: USDA-FAANG-Chicken


text: Western University of Health Sciences

text: Chicken crossbreed

text: normal

text: organism

text: gallus gallus

text: FAANG

text: adults

text: male

text: USDA-FAANG-Chicken


text: Western University of Health Sciences

text: Chicken crossbreed

text: normal

text: organism

text: gallus gallus

text: FAANG

text: adults

text: male

text: USDA-FAANG-Chicken


text: Western University of Health Sciences

text: Chicken crossbreed

text: normal

text: organism

text: gallus gallus

text: FAANG

text: Juvenile

text: female

text: USDA-FAANG-Chicken


text: Western University of Health Sciences

text: Chicken crossbreed

text: normal

text: organism

text: gallus gallus

text: FAANG

text: adults

text: male

text: USDA-FAANG-Chicken


USDA_Ovary - Rep1

unit: week

characteristic: animal age at collection

characteristic: derived from

text: adult

characteristic: developmental stage

text: normal

characteristic: health status at collection

text: specimen from organism

text: gallus gallus

text: Ovary

characteristic: organism part

text: FAANG

text: Adult (egg laying), m6, ovary

text: USDA_Ovary - Rep1

characteristic: specimen collection date

characteristic: specimen collection protocol

text: USDA-FAANG-Chicken


USDA_Ovary - Rep2

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Ovary

text: FAANG

text: Adult (egg laying), m20, ovary

text: USDA_Ovary - Rep2

text: USDA-FAANG-Chicken


USDA_Jejunum - Rep1

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Jejunum

text: FAANG

text: Adult, B17, jejunum

text: USDA_Jejunum - Rep1

text: USDA-FAANG-Chicken


USDA_Jejunum - Rep2

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Jejunum

text: FAANG

text: Adult, B18, jejunum

text: USDA_Jejunum - Rep2

text: USDA-FAANG-Chicken


USDA_Ileum - Rep1

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Ileum

text: FAANG

text: Adult, B17, ileum

text: USDA_Ileum - Rep1

text: USDA-FAANG-Chicken


USDA_Ileum - Rep2

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Ileum

text: FAANG

text: Adult, B18, ileum

text: USDA_Ileum - Rep2

text: USDA-FAANG-Chicken


USDA_Proximal Cecum - Rep1

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Caecum

text: FAANG

text: Adult, m14, proximal cecum

text: USDA_Proximal Cecum - Rep1

text: USDA-FAANG-Chicken


USDA_Proximal Cecum - Rep2

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Caecum

text: FAANG

text: Adult, m15, proximal cecum

text: USDA_Proximal Cecum - Rep2

text: USDA-FAANG-Chicken


USDA_Monocyte (blood) - Rep1

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Monocyte

text: FAANG

text: Monocytes from peripheral blood, m137

text: USDA_Monocyte (blood) - Rep1

text: USDA-FAANG-Chicken


USDA_Monocyte (blood) - Rep2

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Monocyte

text: FAANG

text: Monocytes from peripheral blood, m139

text: USDA_Monocyte (blood) - Rep2

text: USDA-FAANG-Chicken


USDA_B Cell - Rep1

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: B-lymphocyte

text: FAANG

text: B cells from peripheral blood, MCl

text: USDA_B Cell - Rep1

text: USDA-FAANG-Chicken


USDA_B Cell - Rep2

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: B-lymphocyte

text: FAANG

text: B cells from peripheral blood, m18

text: USDA_B Cell - Rep2

text: USDA-FAANG-Chicken


USDA_Thymus - Rep1

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Thymus

text: FAANG

text: Adult, thymus, m8

text: USDA_Thymus - Rep1

text: USDA-FAANG-Chicken


USDA_Thymus - Rep2

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Thymus

text: FAANG

text: Adult, thymus, m11

text: USDA_Thymus - Rep2

text: USDA-FAANG-Chicken


USDA_Bursa - Rep1

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Bursa of Fabricius

text: FAANG

text: Adult, bursa, m7

text: USDA_Bursa - Rep1

text: USDA-FAANG-Chicken


USDA_Bursa - Rep2

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Bursa of Fabricius

text: FAANG

text: Adult, bursa, m8

text: USDA_Bursa - Rep2

text: USDA-FAANG-Chicken


USDA_Macrophage (lung) - Rep1

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Alveolar macrophage

text: FAANG

text: Macrophages from lungs, m802

text: USDA_Macrophage (lung) - Rep1

text: USDA-FAANG-Chicken


USDA_Macrophage (lung) - Rep2

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: Alveolar macrophage

text: FAANG

text: Macrophages from lungs, m806

text: USDA_Macrophage (lung) - Rep2

text: USDA-FAANG-Chicken


USDA_T Cell (spleen) - Rep1

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: T-lymphocyte

text: FAANG

text: T cells from spleen, m15

text: USDA_T Cell (spleen) - Rep1

text: USDA-FAANG-Chicken


USDA_T Cell (spleen) - Rep2

text: adult

text: normal

text: specimen from organism

text: gallus gallus

text: T-lymphocyte

text: FAANG

text: T cells from spleen, m19

text: USDA_T Cell (spleen) - Rep2

text: USDA-FAANG-Chicken