status: PUBLIC

unit: YYYY-MM

characteristic: birth date

text: normal

characteristic: health status

text: organism

characteristic: material

text: Scophthalmus maximus

characteristic: organism

text: FAANG

characteristic: project

text: Scophthalmus maximus, Immature male, ~8 months of age

characteristic: sample description

characteristic: sample name

text: AQUA-FAANG

characteristic: secondary project

text: male

characteristic: sex

text: AQUA-FAANG metadata for turbot (Scophthalmus maximus) samples: WP1 (BodyMaps and DevMaps) & WP3 (ImmunoMaps)

characteristic: submission description

characteristic: submission title

type: derived from

Stolt Sea Farm

Role: biomaterial provider

Address: C/Letonia nº2, 15707 Santiago de Compostela, Spain

USC

Address: Av. Carvallo Calero, s/n, Veterinary faculty, pavilion 4, 27002 Lugo, Spain

Role: consortium member

Role: data analyst

Role: experiment performer

Role: institution

Role: investigator

Role: submitter

Belén Gómez Pardo

FirstName: Belén

LastName: Gómez Pardo

Paulino Martínez Portela

FirstName: Paulino

LastName: Martínez Portela

Óscar Aramburu González

FirstName: Óscar

LastName: Aramburu González


text: normal

text: organism

text: Scophthalmus maximus

text: FAANG

text: Scophthalmus maximus, Immature female, ~8 months of age

text: AQUA-FAANG

text: female


text: normal

text: organism

text: Scophthalmus maximus

text: FAANG

text: AQUA-FAANG

text: female


text: normal

text: organism

text: Scophthalmus maximus

text: FAANG

text: Scophthalmus maximus, Mature male, ~1.5 years of age

text: AQUA-FAANG

text: male


text: normal

text: organism

text: Scophthalmus maximus

text: FAANG

text: Scophthalmus maximus, Mature female, ~1.5 years of age

text: AQUA-FAANG

text: female


text: normal

text: organism

text: Scophthalmus maximus

text: FAANG

text: Scophthalmus maximus, Immature undetermined, ~8 months of age

text: AQUA-FAANG

text: restricted access


text: normal

text: organism

text: Scophthalmus maximus

text: FAANG

text: Scophthalmus maximus embryos

text: AQUA-FAANG

text: restricted access


unit: month

characteristic: animal age at collection

characteristic: derived from

text: sexually immature stage

characteristic: developmental stage

text: fasted

characteristic: fasted status

text: normal

characteristic: health status at collection

text: specimen from organism

text: Scophthalmus maximus

text: head kidney

characteristic: organism part

text: FAANG

text: Scophthalmus maximus; Head Kidney; Immature undetermined; Sampled tissue was homogenized and pooled to develop cell cultures

text: AQUA-FAANG

characteristic: specimen collection date

characteristic: specimen collection protocol


unit: hour

unit: parts per thousand

characteristic: average water salinity

unit: Thermal time

characteristic: degree days

text: blastula stage

text: fed

unit: generations from wild

characteristic: generations from wild

text: Water

characteristic: growth media

text: pre

characteristic: hatching

text: normal

text: specimen from organism

characteristic: material

unit: day

characteristic: medium replacement frequency

text: Scophthalmus maximus

text: embryo

text: Domesticated diploid

characteristic: origin

characteristic: percentage total somite number

characteristic: photoperiod

unit: Celsius

characteristic: post-hatching water temperature average

characteristic: pre-hatching water temperature average

text: FAANG

text: gonochoric

characteristic: reproductive strategy

text: Late Blastula, embryonic material; RNAseq material

text: AQUA-FAANG

characteristic: time post fertilisation


characteristic: animal age at collection

characteristic: derived from

text: gastrula stage

characteristic: developmental stage

text: fed

characteristic: fasted status

text: Water

text: pre

text: normal

characteristic: health status at collection

text: specimen from organism

text: Scophthalmus maximus

characteristic: organism

text: embryo

characteristic: organism part

text: Domesticated diploid

text: FAANG

characteristic: project

text: gonochoric

text: Gastrula (embryonic shield), embryonic material; RNAseq material

characteristic: sample description

characteristic: sample name

text: AQUA-FAANG

characteristic: secondary project

characteristic: submission description

characteristic: submission title


characteristic: average water salinity

characteristic: degree days

text: late embryonic stage

text: fed

characteristic: generations from wild

text: Water

characteristic: growth media

text: pre

characteristic: hatching

text: normal

text: specimen from organism

characteristic: material

characteristic: medium replacement frequency

text: Scophthalmus maximus

text: embryo

text: Domesticated diploid

characteristic: origin

characteristic: percentage total somite number

characteristic: photoperiod

characteristic: post-hatching water temperature average

text: FAANG

text: gonochoric

text: Early segmentation, embryonic material; RNAseq material

text: AQUA-FAANG

characteristic: specimen collection date

characteristic: specimen collection protocol


characteristic: animal age at collection

characteristic: derived from

text: late embryonic stage

characteristic: developmental stage

text: fed

characteristic: fasted status

text: Water

text: pre

text: normal

characteristic: health status at collection

text: specimen from organism

text: Scophthalmus maximus

characteristic: organism

text: embryo

characteristic: organism part

text: Domesticated diploid

characteristic: pre-hatching water temperature average

text: FAANG

characteristic: project

text: gonochoric

characteristic: reproductive strategy

text: Mid segmentation, embryonic material; RNAseq material

characteristic: sample description

characteristic: sample name

text: AQUA-FAANG

characteristic: time post fertilisation


characteristic: average water salinity

characteristic: degree days

text: late embryonic stage

text: fed

characteristic: generations from wild

text: Water

characteristic: growth media

text: pre

characteristic: hatching

text: normal

text: specimen from organism

characteristic: material

characteristic: medium replacement frequency

text: Scophthalmus maximus

text: embryo

text: Domesticated diploid

characteristic: origin

characteristic: percentage total somite number

characteristic: photoperiod

text: FAANG

text: gonochoric

text: Late segmentation, embryonic material; RNAseq material

text: AQUA-FAANG

characteristic: secondary project

characteristic: submission description

characteristic: submission title


characteristic: animal age at collection

characteristic: derived from

text: pharyngula stage

characteristic: developmental stage

text: fed

characteristic: fasted status

text: Water

text: pre

text: normal

characteristic: health status at collection

text: specimen from organism

text: Scophthalmus maximus

characteristic: organism

text: embryo

characteristic: organism part

text: Domesticated diploid

characteristic: post-hatching water temperature average

characteristic: pre-hatching water temperature average

text: FAANG

characteristic: project

text: gonochoric

characteristic: reproductive strategy

text: Prehatching stage, embryonic material; RNAseq material

text: AQUA-FAANG

characteristic: specimen collection date

characteristic: specimen collection protocol


characteristic: average water salinity

characteristic: degree days

text: cleavage stage

text: fed

characteristic: generations from wild

text: Water

characteristic: growth media

text: pre

characteristic: hatching

text: normal

text: specimen from organism

characteristic: material

characteristic: medium replacement frequency

text: Scophthalmus maximus

text: embryo

text: Domesticated diploid

characteristic: origin

characteristic: percentage total somite number

characteristic: photoperiod

text: FAANG

text: gonochoric

text: 32-64 cell stage, embryonic material; RNAseq material

characteristic: sample description

characteristic: sample name

text: AQUA-FAANG

characteristic: time post fertilisation


characteristic: animal age at collection

characteristic: derived from

text: cleavage stage

characteristic: developmental stage

text: fed

characteristic: fasted status

text: Water

text: pre

text: normal

characteristic: health status at collection

text: specimen from organism

text: Scophthalmus maximus

characteristic: organism

text: embryo

characteristic: organism part

text: Domesticated diploid

characteristic: post-hatching water temperature average

characteristic: pre-hatching water temperature average

text: FAANG

characteristic: project

text: gonochoric

text: Late morula, embryonic material; RNAseq material

text: AQUA-FAANG

characteristic: secondary project

characteristic: submission description

characteristic: submission title


characteristic: average water salinity

characteristic: degree days

text: blastula stage

text: fed

characteristic: generations from wild

text: Water

characteristic: growth media

text: pre

characteristic: hatching

text: normal

text: specimen from organism

characteristic: material

characteristic: medium replacement frequency

text: Scophthalmus maximus

text: embryo

text: Domesticated diploid

characteristic: origin

characteristic: percentage total somite number

characteristic: photoperiod

text: FAANG

text: gonochoric

characteristic: reproductive strategy

text: Early blastula, embryonic material; RNAseq material

text: AQUA-FAANG

characteristic: specimen collection date

characteristic: specimen collection protocol


characteristic: animal age at collection

characteristic: derived from

text: gastrula stage

characteristic: developmental stage

text: fed

characteristic: fasted status

text: Water

text: pre

text: normal

characteristic: health status at collection

text: specimen from organism

text: Scophthalmus maximus

characteristic: organism

text: embryo

characteristic: organism part

text: Domesticated diploid

characteristic: post-hatching water temperature average

characteristic: pre-hatching water temperature average

text: FAANG

characteristic: project

text: gonochoric

text: Gastrula (neural plate), embryonic material; RNAseq material

characteristic: sample description

characteristic: sample name

text: AQUA-FAANG

characteristic: time post fertilisation


characteristic: average water salinity

characteristic: degree days

text: gastrula stage

text: fed

characteristic: generations from wild

text: Water

characteristic: growth media

text: pre

characteristic: hatching

text: normal

text: specimen from organism

characteristic: material

characteristic: medium replacement frequency

text: Scophthalmus maximus

text: embryo

text: Domesticated diploid

characteristic: origin

characteristic: percentage total somite number

characteristic: photoperiod

text: FAANG

text: gonochoric

text: Blastopore closure stage, embryonic material; RNAseq material

text: AQUA-FAANG

characteristic: secondary project

characteristic: submission description

characteristic: submission title


characteristic: animal age at collection

characteristic: derived from

text: pharyngula stage

characteristic: developmental stage

text: fed

characteristic: fasted status

text: Water

text: pre

text: normal

characteristic: health status at collection

text: specimen from organism

text: Scophthalmus maximus

characteristic: organism

text: embryo

characteristic: organism part

text: Domesticated diploid

characteristic: post-hatching water temperature average

characteristic: pre-hatching water temperature average

text: FAANG

characteristic: project

text: gonochoric

characteristic: reproductive strategy

text: Early Pharyngula, embryonic material; RNAseq material

text: AQUA-FAANG

characteristic: specimen collection date

characteristic: specimen collection protocol

text: AQUA-FAANG metadata for turbot (Scophthalmus maximus) samples: WP1 (BodyMaps and DevMaps) & WP3 (ImmunoMaps)


characteristic: average water salinity

characteristic: degree days

text: blastula stage

text: fed

characteristic: generations from wild

text: Water

characteristic: growth media

text: pre

characteristic: hatching

text: normal

text: specimen from organism

characteristic: material

characteristic: medium replacement frequency

text: Scophthalmus maximus

text: embryo

text: Domesticated diploid

characteristic: origin

characteristic: percentage total somite number

characteristic: photoperiod

text: FAANG

text: gonochoric

text: Late Blastula, embryonic material; ATACseq material

characteristic: sample description

characteristic: sample name

text: AQUA-FAANG

characteristic: time post fertilisation


characteristic: animal age at collection

characteristic: derived from

text: gastrula stage

characteristic: developmental stage

text: fed

characteristic: fasted status

text: Water

text: pre

text: normal

characteristic: health status at collection

text: specimen from organism

text: Scophthalmus maximus

characteristic: organism

text: embryo

characteristic: organism part

text: Domesticated diploid

characteristic: post-hatching water temperature average

characteristic: pre-hatching water temperature average

text: FAANG

characteristic: project

text: gonochoric

text: Gastrula (embryonic shield), embryonic material; ATACseq material

text: AQUA-FAANG

characteristic: secondary project

characteristic: submission description

characteristic: submission title


characteristic: average water salinity

characteristic: degree days

text: late embryonic stage

text: fed

characteristic: generations from wild

text: Water

characteristic: growth media

text: pre

characteristic: hatching

text: normal

text: specimen from organism

characteristic: material

characteristic: medium replacement frequency

text: Scophthalmus maximus

text: embryo

text: Domesticated diploid

characteristic: origin

characteristic: percentage total somite number

characteristic: photoperiod

text: FAANG

text: gonochoric

characteristic: reproductive strategy

text: Early segmentation, embryonic material; ATACseq material

text: AQUA-FAANG

characteristic: specimen collection date

characteristic: specimen collection protocol


characteristic: animal age at collection

characteristic: derived from

text: late embryonic stage

characteristic: developmental stage

text: fed

characteristic: fasted status

text: Water

text: pre

text: normal

characteristic: health status at collection

text: specimen from organism

text: Scophthalmus maximus

characteristic: organism

text: embryo

characteristic: organism part

text: Domesticated diploid

characteristic: post-hatching water temperature average

characteristic: pre-hatching water temperature average

text: FAANG

characteristic: project

text: gonochoric

text: Mid segmentation, embryonic material; ATACseq material

characteristic: sample description

characteristic: sample name

text: AQUA-FAANG

characteristic: time post fertilisation


characteristic: average water salinity

characteristic: degree days

text: late embryonic stage

text: fed

characteristic: generations from wild

text: Water

characteristic: growth media

text: pre

characteristic: hatching

text: normal

text: specimen from organism

characteristic: material

characteristic: medium replacement frequency

text: Scophthalmus maximus

text: embryo

text: Domesticated diploid

characteristic: origin

characteristic: percentage total somite number

characteristic: photoperiod

text: FAANG

text: gonochoric

text: Late segmentation, embryonic material; ATACseq material

text: AQUA-FAANG

characteristic: secondary project

characteristic: submission description

characteristic: submission title


characteristic: animal age at collection

characteristic: derived from

text: pharyngula stage

characteristic: developmental stage

text: fed

characteristic: fasted status

text: Water

text: pre

text: normal

characteristic: health status at collection

text: specimen from organism

text: Scophthalmus maximus

characteristic: organism

text: embryo

characteristic: organism part

text: Domesticated diploid

characteristic: post-hatching water temperature average

characteristic: pre-hatching water temperature average

text: FAANG

characteristic: project

text: gonochoric

characteristic: reproductive strategy

text: Prehatching stage, embryonic material; ATACseq material

text: AQUA-FAANG

characteristic: specimen collection date

characteristic: specimen collection protocol


text: Tricaine methanesulfonate (MS-222)

characteristic: anaesthetic or sedative name

unit: mg/L

characteristic: average water oxygen

characteristic: average water salinity

text: sexually immature stage

text: Ration pellets according to mouth size

characteristic: diet

text: fasted

characteristic: food restriction

characteristic: generations from wild

text: ovary

characteristic: gonad type

text: post

characteristic: hatching

text: normal

text: specimen from organism

characteristic: material

text: immature

characteristic: maturity state

text: Lethal anaesthetic and exsanguination

characteristic: method of euthanasia

text: Scophthalmus maximus

text: fast muscle tissue

text: Domesticated diploid

characteristic: origin

characteristic: photoperiod

characteristic: post-hatching animal density

text: FAANG

text: gonochoric

text: Scophthalmus maximus; Muscle; Immature female

characteristic: sample description

characteristic: sample name

characteristic: sampling day end time

characteristic: sampling day start time

unit: grams

characteristic: sampling weight

text: AQUA-FAANG

unit: centimeters

characteristic: standard length

characteristic: time post fertilisation

characteristic: total length


characteristic: derived from

text: pool of specimens

text: Scophthalmus maximus

characteristic: organism

characteristic: pool creation date

characteristic: pool creation protocol

text: FAANG

characteristic: project

text: Mid segmentation, embryonic material; pool; CHIPseq material

text: AQUA-FAANG

characteristic: secondary project

characteristic: submission description

characteristic: submission title


text: leukocyte

characteristic: cell type

text: cell specimen

characteristic: material

text: Scophthalmus maximus

text: FAANG

characteristic: purification protocol

text: Scophthalmus maximus; leukocyte; head kidney; immature undetermined

text: AQUA-FAANG