text: live

text: Generic

text: Cervical cancer cell line

text: none, input DNA

text: Homo sapiens

text: HeLa cells

text: input DNA

text: TNF-treated cells (45 min)


Namalwa B - Mock Infected

status: PUBLIC

characteristic: External Id

text: Northwestern Univerisity

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens

characteristic: title


Namalwa B - SeV 1 h.p.i.

text: Northwestern Univerisity

text: live

text: Generic

text: Homo sapiens

text: Generic sample from Homo sapiens


Namalwa B - SeV 2 h.p.i.

text: Northwestern Univerisity

text: live

text: Generic

text: Homo sapiens

text: Generic sample from Homo sapiens


Namalwa B - SeV 4 h.p.i.

text: Northwestern Univerisity

text: live

text: Generic

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Escherichia coli 99.1762

tag: attribute

characteristic: strain

text: Escherichia coli 99.1762


text: live

text: Generic

text: Escherichia coli 99.1781

text: Escherichia coli 99.1781


text: live

text: Generic

text: Escherichia coli 99.0670

text: Escherichia coli 99.0670


text: live

text: Generic

text: Escherichia coli 3.4880

text: Escherichia coli 3.4880


text: live

text: Generic

text: Escherichia coli 7.1982

text: Escherichia coli 7.1982


text: live

text: Generic

text: Escherichia coli 95.0083

text: Escherichia coli 95.0083


text: live

text: Generic

text: Escherichia coli PA35

text: Escherichia coli PA35


MCF-7 cell line RNA-seq experiment

text: University of Trieste

text: live

text: Generic

text: Homo sapiens

text: MCF-7 cell line treated with 1-C60 and 2-C60 fullerenes


text: UR 406 Abeilles et Environnement, INRA Avignon

text: live

text: Generic

characteristic: age

text: Apis mellifera

text: Varroa destructor

characteristic: parasite

text: honey bee_brain_Varroa

text: brain

characteristic: tissue


text: live

text: Generic

text: Apis mellifera

text: Nosema ceranae

text: honey bee_brain_Nosema

text: brain


text: live

text: Generic

text: Apis mellifera

text: honey bee_brain_control

text: brain


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: Small Cell Lung Carcinoma

text: WCE_H2171 rep2


text: live

text: Generic

text: Homo sapiens

text: Small Cell Lung Carcinoma

text: WCE H128_2


text: live

text: Generic

text: Max

characteristic: chip antibody

text: Homo sapiens

text: Small Cell Lung Carcinoma

text: Max_ChIPSeq H2171 rep2


characteristic: External Id

text: live

text: Generic

text: Max

text: Homo sapiens

text: Small Cell Lung Carcinoma

text: Max_ChIPSeq H128 rep2


characteristic: INSDC center name

text: live

text: Generic

text: cMyc

text: Homo sapiens

text: Small Cell Lung Carcinoma

text: cMyc_ChIPSeq in H128 rep2


characteristic: INSDC first public

text: live

text: Generic

text: cMyc

text: Homo sapiens

text: Small Cell Lung Carcinoma

text: cMyc ChIPSeq H2171 rep2


characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: Embryonic stem cells


characteristic: INSDC secondary accession

text: live

text: Generic

text: RNA Pol II (Rpb1 N-terminus)

text: Homo sapiens

text: Embryonic stem cells


text: MD Anderson Cancer Center

text: live

characteristic: INSDC status

text: Generic

text: Santa Cruz Biotechnology

characteristic: antibody vendor

text: Pluripotent hESC

characteristic: cell type

text: Homo sapiens

text: H9 hESC


text: MD Anderson Cancer Center

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Santa Cruz Biotechnology

text: DOX-damaged induced hESC

text: Homo sapiens

text: H9 hESC


text: MD Anderson Cancer Center

text: live

text: Generic

text: Santa Cruz Biotechnology

text: RA-mediated differentiating hESC

text: Homo sapiens

characteristic: organism

text: H9 hESC

characteristic: title


text: MD Anderson Cancer Center

text: live

text: Generic

text: Homo sapiens

text: H9 hESC

text: input DNA


text: MD Anderson Cancer Center

text: live

text: Generic

text: Milipore

text: Pluripotent hESC

text: Homo sapiens

text: H9 hESC


text: MD Anderson Cancer Center

text: live

text: Generic

text: Milipore

text: RA-mediated differentiating hESC

text: Homo sapiens

text: H9 hESC


text: Genome Research Foundation

text: live

text: Generic

text: Homo sapiens


name: soil in greenhouse in tailai shandong province china

text: Shandong Agricultural University

text: live

text: Generic

text: soil metagenome

text: soil microbial diversity in greenhouse


name: soil in greenhouse in taian city shandong province china

text: Shandong Agricultural University

text: live

text: Generic

text: soil metagenome

text: soil microbial diversity in greenhouse


text: Botany of Institute,CAS

text: live

text: Generic

text: Ipomoea purpurea

text: A


text: Botany of Institute,CAS

text: live

text: Generic

text: Ipomoea purpurea

text: B


text: Botany of Institute,CAS

text: live

text: Generic

text: Ipomoea purpurea

text: C


text: Botany of Institute,CAS

text: live

text: Generic

text: Ipomoea purpurea

text: D


text: Botany of Institute,CAS

text: live

text: Generic

text: Ipomoea purpurea

text: E


text: Botany of Institute,CAS

text: live

text: Generic

text: Ipomoea purpurea

text: F


text: University of Copenhagen

text: live

text: Generic

text: PR..001 ACTCGCGCAC CCTAYGGGRBGCASCAG gluten PR..002 AGAGCGTCAC CCTAYGGGRBGCASCAG gluten PR..003 AGCGACTAGC CCTAYGGGRBGCASCAG gluten PR..004 AGTAGTGATC CCTAYGGGRBGCASCAG gluten PR..005 AGTGACACAC CCTAYGGGRBGCASCAG gluten

characteristic: description

text: Mus musculus domesticus


text: University of Copenhagen

text: live

text: Generic

text: PR..006 AGCTCACGTA CCTAYGGGRBGCASCAG gluten PR..007 AGTATACATA CCTAYGGGRBGCASCAG gluten PR..008 TCGATAGTGA CCTAYGGGRBGCASCAG gluten PR..009 TCGCTGCGTA CCTAYGGGRBGCASCAG gluten PR..010 TCTGACGTCA CCTAYGGGRBGCASCAG gluten PR..011 TGAGTCAGTA CCTAYGGGRBGCASCAG gluten PR..012 TGTAGTGTGA CCTAYGGGRBGCASCAG gluten PR..013 TGTCACACGA CCTAYGGGRBGCASCAG gluten PR..014 TGTCGTCGCA CCTAYGGGRBGCASCAG gluten PR..015 ACACATACGC CCTAYGGGRBGCASCAG gluten PR..016 ACAGTCGTGC CCTAYGGGRBGCASCAG gluten PR..017 ACATGACGAC CCTAYGGGRBGCASCAG gluten PR..018 ACGACAGCTC CCTAYGGGRBGCASCAG gluten PR..019 ACGTCTCATC CCTAYGGGRBGCASCAG gluten PR..020 ACTCATCTAC CCTAYGGGRBGCASCAG gluten PR..021 ACTCGCGCAC CCTAYGGGRBGCASCAG gluten

text: Mus musculus domesticus


text: University of Copenhagen

text: live

text: Generic

text: PR..022 AGTCGAGAGA CCTAYGGGRBGCASCAG gluten_free PR..023 AGTGCTACGA CCTAYGGGRBGCASCAG gluten_free PR..024 CGATCGTATA CCTAYGGGRBGCASCAG gluten_free PR..025 CGCAGTACGA CCTAYGGGRBGCASCAG gluten_free PR..026 CGCGTATACA CCTAYGGGRBGCASCAG gluten_free PR..027 CGTACAGTCA CCTAYGGGRBGCASCAG gluten_free PR..028 CGTACTCAGA CCTAYGGGRBGCASCAG gluten_free PR..029 CTACGCTCTA CCTAYGGGRBGCASCAG gluten_free PR..030 CTATAGCGTA CCTAYGGGRBGCASCAG gluten_free PR..031 TACGTCATCA CCTAYGGGRBGCASCAG gluten_free PR..032 TAGTCGCATA CCTAYGGGRBGCASCAG gluten_free PR..033 TATATATACA CCTAYGGGRBGCASCAG gluten_free PR..034 TATGCTAGTA CCTAYGGGRBGCASCAG gluten_free PR..035 TCACGCGAGA CCTAYGGGRBGCASCAG gluten_free PR..036 AGAGCGTCAC CCTAYGGGRBGCASCAG gluten_free PR..037 AGCGACTAGC CCTAYGGGRBGCASCAG gluten_free PR..038 AGTAGTGATC CCTAYGGGRBGCASCAG gluten_free PR..039 AGTGACACAC CCTAYGGGRBGCASCAG gluten_free PR..040 AGTGTATGTC CCTAYGGGRBGCASCAG gluten_free PR..041 ATAGATAGAC CCTAYGGGRBGCASCAG gluten_free

text: Mus cookii


text: Ghent University

text: live

text: Generic

text: Pool of twelve diverse Sisymbrium austriacum individuals, originating from French and Spanish Pyrenees, the Belgian Meuse river area, and Belgian historical collections

text: Sisymbrium austriacum


text: VIB - KULeuven

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Selected pool (58 segregants) - Thermotolerance (growth at 41*C)


text: VIB - KULeuven

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Unselected pool from downgraded parents (58 segregants)


text: VIB - KULeuven

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Selected pool from downgraded parents (58 segregants) - Thermotolerance (growth at 40.7 *C)


characteristic: GEO Accession

text: Gene Expression Omnibus

text: live

text: Generic

text: 0.4 yr

characteristic: age

text: Anti-dimethyl-Histone H3 (Lys4) Antibody [Millipore, catalog# 07-030]

characteristic: antibody

text: source: prefrontal cortex

text: Macaca mulatta

text: prefrontal cortex

characteristic: tissue

text: GSM1008952: H3K4me2_0.4yr


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: 9 yr

text: source: prefrontal cortex

text: Macaca mulatta

text: prefrontal cortex

text: GSM1008953: H3K4me2_9yr


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: 22 yr

text: source: prefrontal cortex

text: Macaca mulatta

text: prefrontal cortex

text: GSM1008954: H3K4me2_22yr


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 26 yr

text: source: prefrontal cortex

text: Macaca mulatta

text: prefrontal cortex

text: GSM1008955: H3K4me2_26yr


text: Department of Chemisty, University of Chicago

text: live

text: Generic

text: a pool of 7 macaque individuals of different ages, including the four used for ChIP-seq, was sequenced as a control input

text: Macaca mulatta

text: prefrontal cortex

text: prefrontal cortex

text: Input (control)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: female

characteristic: gender

text: parental

characteristic: generation

text: Cynoglossus semilaevis

text: Parental normal female ovary

text: ovary

text: Parental ovary replicate A


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: female

text: parental

text: Cynoglossus semilaevis

text: Parental normal female ovary

text: ovary

text: Parental ovary replicate B


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

characteristic: SRA accession

text: female

text: F1 offspring

text: Cynoglossus semilaevis

characteristic: organism

text: F1 normal female ovary

text: ovary

text: F1 ovary replicate A


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: female

text: F1 offspring

text: Cynoglossus semilaevis

text: F1 normal female ovary

text: ovary

text: F1 ovary replicate B

characteristic: title


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: pseudo-male

characteristic: gender type

text: parental

text: Cynoglossus semilaevis

text: Parental pseudo-male testis

text: testis

text: Parental pseudo-male testis replicate A


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: pseudo-male

text: parental

text: Cynoglossus semilaevis

text: Parental pseudo-male testis

text: testis

text: Parental pseudo-male testis replicate B


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: pseudo-male

text: F1 offspring

text: Cynoglossus semilaevis

text: F1 pseudo-male testis

text: testis

text: F1 pseudo-male testis replicate A


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: pseudo-male

text: F1 offspring

text: Cynoglossus semilaevis

text: F1 pseudo-male testis

text: testis

text: F1 pseudo-male testis replicate B


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: male

text: Cynoglossus semilaevis

text: Normal male testis

text: testis

text: Normal male testis replicate A


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: male

text: Cynoglossus semilaevis

text: Normal male testis

text: testis

text: Normal male testis replicate B


text: Penn State

text: live

text: Generic

text: ice metagenome

text: Generic sample from uncultured environmental sample


text: Penn State

text: live

text: Generic

text: ice metagenome


text: Huazhong Agricultural University

text: live

text: Generic

text: 28'C in dark

characteristic: condition of culture

characteristic: cultivar

text: 7 days seedlings

characteristic: developmental stage

text: Gossypium hirsutum

text: small RNA

characteristic: sample type

text: seedlings

text: hypocotyls

text: ys-1 small RNA


characteristic: External Id

text: Huazhong Agricultural University

characteristic: INSDC center name

text: live

text: Generic

text: 28'C in dark

text: 7 days seedlings

text: Gossypium hirsutum

text: polyA RNA

text: seedlings

text: hypocotyls

characteristic: tissue

text: ys-1 degradome


text: Huazhong Agricultural University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: 28'C in light

text: 2 months after inducement

text: Gossypium hirsutum

text: small RNA

text: hypocotyls

text: embryogenic calli

text: ys-3 small RNA


text: Huazhong Agricultural University

text: live

characteristic: INSDC status

text: Generic

text: 28'C in light

text: 2 months after inducement

text: Gossypium hirsutum

text: polyA RNA

text: hypocotyls

text: embryogenic calli

text: ys-3 degradome


text: Systems Biology / Immunology Group, Animal & Bioscience Research Department, Teagasc

text: live

text: Generic

characteristic: NCBI submission model

characteristic: animal number

text: Alveolar macrophage

characteristic: cell type

text: Bos taurus

text: Lung lavage


PRJNA174567.Cryptococcus neoformans C23

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: Cryptococcus neoformans C23

characteristic: organism

text: Cryptococcus neoformans C23

characteristic: sample name

characteristic: strain

text: Generic sample from Cryptococcus neoformans C23


text: Broad Institute

text: live

text: Generic

text: Generic

text: Cryptococcus neoformans Bt85

text: Cryptococcus neoformans Bt85

text: Generic sample from Cryptococcus neoformans Bt85

characteristic: title


PRJNA28331.Bacteroides caccae MR1 #13

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacteroides caccae MR1_13

text: Bacteroides caccae MR1 #13

text: MR1 #13

text: Generic sample from Bacteroides caccae MR1_13


text: Wierzbicki Lab, Molecular, Cellular, and Developmental Biology, University of Michigan

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody

characteristic: ecotype

text: Arabidopsis thaliana

text: 2-3 week seedlings

text: Col-0 H3 rep 1


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Arabidopsis thaliana

text: 2-3 week seedlings

text: Col-0 H3 rep 2


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Arabidopsis thaliana

text: 2-3 week seedlings

text: nrpe1 H3 rep 1


text: live

text: Generic

characteristic: NCBI submission model

text: Arabidopsis thaliana

text: 2-3 week seedlings

text: nrpe1 H3 rep 2


text: live

text: Generic

text: Arabidopsis thaliana

text: 2-3 week seedlings

text: idn2-1 RNA replicate 1


text: live

text: Generic

text: Arabidopsis thaliana

text: 2-3 week seedlings

text: idn2-1 RNA replicate 2


text: live

text: Generic

text: Arabidopsis thaliana

text: 2-3 week seedlings

text: idn2-1 RNA replicate 3


text: ENCODE DCC

text: live

text: Generic

text: Coriell

characteristic: biomaterial provider

characteristic: cell

text: lymphoblastoid cell line, Clinically affected; microcephaly; low frontal hairline; synophris; penciled arched eyebrows; short nose; crescent shaped mouth; hirsutism; micromelia; short thumbs; mental retardation; clinically normal monozygotic twin sister is GM13976

characteristic: cell description

text: affected

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. Yanwen Jiang

text: Naive B cells (IgD+) isolated from de-identified tonsillectomy

text: normal

text: human

text: U

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_K562

text: Homo sapiens

characteristic: treatment

text: Cells grown with 1 uM suberoylanilide hydroxamic acid (SAHA) dissolved in DMSO supplementing RPMI1640 + 10% FBS media for 72 hours (SAHA vehicle volume is ~ .05% of the total media volume). SAHA was provided by Cayman Chemical, item # 10009929.

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: NICHD

characteristic: cell

text: Primary frozen heart tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase), 1863 (Rep B1 FAIRE), 4548 (Rep B2 FAIRE)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: B

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: NICHD

text: Primary frozen psoas muscle tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase), 1540 (Rep B1), 1863 (Rep B2 FAIRE)

text: normal

text: human

text: B

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Coriell

characteristic: biomaterial provider

text: fibroblasts taken from individuals with Parkinson's disease

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Coriell

characteristic: cell

characteristic: cell description

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Coriell

text: skin fibroblast

text: normal

characteristic: cell karyotype

text: human

text: M

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. David Randolph at University of Alabama, Birmingham

text: CD4+ cells isolated from human blood and enriched for Th0 populations

text: normal

text: mesoderm

characteristic: cell lineage

text: human

text: B

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Coriell

characteristic: biomaterial provider

text: skin fibroblast

text: normal

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

text: Duke_DnaseSeq_Fibrobl_GM03348_lenti-control

text: lenti-control

characteristic: treatment

text: GM03348 skin fibroblasts (Coriell) were transduced with an induceable lentivirus (pAK111-TRE-3xflag hMyoD-T2A-dsRed) containing get inducible MyoD. Cells were selected in 1ug per ml puro (Sigma catalog P8833) to obtain a pure cell population. Cells were cultured for 10 days (NO DOXYCYCLINE) (Crawford)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: ATCC

characteristic: cell

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05

text: Homo sapiens

text: Duke_DnaseSeq_MCF-7_Hypoxia_LacAcid_ctrl

characteristic: title

text: Untreated cells grown along side Hypoxia LacAcid treated cells (Crawford)


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Kathleen Price Bryan Brain

text: Primary ventromedial prefrontal cortex, from KPBBB donor IDs 673 (Rep B1) and 913 (Rep B2)

text: normal

text: human

text: F

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

text: Homo sapiens

characteristic: organism

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

characteristic: cell lineage

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: treatment

text: Cells were synchronized and subjected to FACS sorting based on DNA content with the peak of double DNA content taken as G2 and M cells. The intermediate DNA content cells between G2-M and G1 phases were excluded. (Crawford)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Coriell

characteristic: cell

text: skin fibroblast

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

text: Homo sapiens

text: Duke_DnaseSeq_Fibrobl_GM03348_lenti-MyoD

text: lenti-MyoD

text: GM03348 skin fibroblasts (Coriell) were transduced with an induceable lentivirus (pAK111-TRE-3xflag hMyoD-T2A-dsRed) containing get inducible MyoD. Cells were selected in 1ug per ml puro (Sigma catalog P8833) to obtain a pure cell population. Cells were induced for MYOD expression for 10 days with doxycycline and at concentration of 3ug per ml. Standard media was used (and replaced every 2 days) during induction: DMEM, 1% Pen Strep, and 10% FBS. (Crawford)

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Josh Chenoweth, Laboratory of Molecular Biology, National Institutes of Health, NINDS

text: iPS cells derived from AG20443 fibroblast

text: human

text: M

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Paul Tesar at Case Western University

characteristic: biomaterial provider

text: iPS cells derived from MSC658 fibroblast

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: ATCC

characteristic: cell

text: malignant melanoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: human

characteristic: cell organism

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Thermo Scientific Open Biosystems

text: embryonic kidney that expresses SV40 large T antigen, HEK293 (ATCC number CRL-1573) is the parental cell line

text: mesoderm

characteristic: cell lineage

text: human

text: F

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

text: epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes

text: cancer

text: endoderm

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment

text: 30 min with 10nM 7b-Estradiol (Crawford)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: epithelial cell line derived from a mammary ductal carcinoma.

characteristic: cell description

text: cancer

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. Darrell Bigner at Duke University Medical Center

text: Medulloblastoma cell line of neuron or neuron precurosr origin

text: cancer

characteristic: cell karyotype

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: NICHD

text: Primary frozen frontal cerebrum tissue from NICHD donor IDs 1104 (Rep B1), 602 (Rep B2), 1442 (Rep B3), all Caucasian

text: normal

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Dr. Yanwen Jiang

text: Germinal center B cells (CD77+) isolated from de-identified tonsillectomy

text: normal

text: human

text: U

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

text: mesoderm

characteristic: cell lineage

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_K562

text: Homo sapiens

characteristic: treatment

text: Cells grown with DMSO supplementing RPMI1640 + 10% FBS media for 72 hours (DMSO volume is ~ .05% of the total media volume). This is an untreated control.

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05

text: Homo sapiens

text: Duke_DnaseSeq_MCF-7_CTCF_shRNA_knockdown

text: CTCF (CCCTC-binding factor) transcript levels were knocked down in cells using lentiviral transduction to express an shRNA targeting the CTCF gene. The lentiviral construct also contained a puromycin resistance selectable marker and cells were treated 2 times, for three days each, to select for cells containing the retroviral construct. By western blot, CTCF protein levels in the knockdown cells were <10% of cell lines transduced with a randomized shRNA lentiviral construct.


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: S. Heimfeld Laboratory, FHCRC

text: Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), newly promoted to tier 2: not in 2011 analysis

text: normal

text: mesoderm

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_CD14_monocytes

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: NICHD

characteristic: biomaterial provider

characteristic: cell

text: Primary frozen cerebellum tissue from NICHD donor IDs 1104 (Rep B1), 602 (Rep B2), 1442 (Rep B3), all Caucasian

characteristic: cell description

text: normal

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Alan Mackay-Sim

text: Human olfactory neurosphere-derived cells from mucosal biopsies

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.

text: cancer

text: ectoderm

characteristic: cell lineage

text: human

text: F

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

text: SK-N-SH

characteristic: line

text: Homo sapiens

text: SK-N-SH


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis

text: normal

text: endoderm

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Coriell

characteristic: biomaterial provider

characteristic: cell

text: lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation

characteristic: cell description

text: affected

characteristic: cell karyotype

text: mesoderm

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Rajinder Kaul, UW

text: B cells, African American, draw number 1, newly promoted to tier 2: not in 2011 analysis

text: normal

text: mesoderm

characteristic: cell lineage

text: human

text: F

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Coriell

text: lymphoblastoid cell line, Clinically normal; 4 paternal cousins have Cornelia de Lange syndrome; 46,XY, t(3;22)(q25.3;p12)

text: normal

text: mesoderm

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Coriell

characteristic: biomaterial provider

characteristic: cell

text: lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation; seizures; 3 cousins are also affected; 46,XY,-22,+der (22)t(3;22)(q25.3;p12)

text: affected

text: mesoderm

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Coriell

text: lymphoblastoid cell line, clinically normal; monozygotic twin sister with Cornelia De Lange syndrome is GM13977

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Sigma-Aldrich

text: Ishikawa

text: endometrial adenocarcinoma

text: human

text: F

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: Homo sapiens

text: Ishikawa

text: Duke_DnaseSeq_Ishikawa_Estradiol_10nM_30m

characteristic: treatment

text: 30 min with 10nM 7b-Estradiol (Crawford)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Sigma-Aldrich

characteristic: biomaterial provider

text: Ishikawa

text: endometrial adenocarcinoma

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: organism

text: Ishikawa

text: 30 minutes with 100 nM 4-hydroxytamoxifen (Crawford)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: ATCC

characteristic: cell

text: prostate epithelial

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: WiCell Research Institute

text: undifferentiated embryonic stem cells

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes

text: cancer

text: endoderm

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: treatment

text: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Josh Chenoweth, Laboratory of Molecular Biology, National Institutes of Health, NINDS

characteristic: cell

text: iPS cells derived from AG08395 fibroblast

characteristic: cell description

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_K562

text: Homo sapiens

text: NaBut

text: 0.5 mM Sodium Butyrate for 72 hours


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

characteristic: labversion

text: Homo sapiens

characteristic: treatment

text: Cells were synchronized and subjected to FACS sorting based on DNA content with the peak of the single DNA content peak taken as G1 cells. The intermediate DNA content cells between G2-M and G1 phases were excluded. (Crawford)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: ATCC

characteristic: cell

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: cancer

text: ectoderm

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Duke_DnaseSeq_MCF-7_Randomized_shRNA_control

characteristic: title

text: Cells were transduced with a lentivirus expressing an shRNA containing a randomized DNA sequence generated by the siRNA Wizard v3.1 (http://www.sirnawizard.com/scrambled2.php) program. Lentiviral constructs also contained the puromycin resistance selectable marker and cells were treated 2 times, for three days each, to select for cells containing the retroviral construct.

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Dr. David Randolph at University of Alabama, Birmingham

text: CD4+ cells isolated from human blood and enriched for Th1 populations

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: B

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. D Sens at University of N. Dakota

characteristic: biomaterial provider

text: Urothelia

text: primary ureter cell culture of urothelial cells derived from a 12 year-old girl and immortalized by transfection with a temperature-sensitive SV-40 large T antigen gene

text: normal

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

text: Homo sapiens

text: Urothelia


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Dr. D Sens at University of N. Dakota

text: Urothelia

characteristic: cell

characteristic: cell description

text: normal

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Urothelia

characteristic: title

characteristic: treatment

text: UT189 E.Coli treatment 1 hour, followed by 24 hour incubation


text: Luxembourg Centre for Systems Biomedicine

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.wastewater

text: wastewater

characteristic: biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: Wastewater treatment plant

characteristic: feature

text: Netherlands

characteristic: geo loc name

characteristic: investigation type

text: water

characteristic: material

text: Candidatus Microthrix parvicella Bio17-1

text: Microthrix genome sequencing

characteristic: project name

text: Genome sequence of “Candidatus Microthrix parvicella” Bio17-1, a long-chain-fatty-acid accumulating filamentous Actinobacterium from a biological wastewater treatment plant. Muller et al. Journal of Bacteriology. In review.

characteristic: strain

text: Cultured Bacterial/Archaeal sample for Candidatus Microthrix parvicella


characteristic: External Id

text: MooreLab, Biochemistry and Molecular Pharmacology, UMass Medical School

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: anti-FLAG M2 (Sigma A2220)

characteristic: antibody 1

text: Sigma

characteristic: antibody 1 manufactuer

text: anti-Y14 (4C4; Sigma Y1253)

characteristic: antibody 2

text: Sigma

characteristic: antibody 2 manufactuer

characteristic: cell line

text: Flp-In 293 T-Rex (Life technologies)

characteristic: cell type

text: Homo sapiens

text: HEK293 cells

text: FLAG only:Y14 RIPiT-Seq


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: anti-FLAG M2 (Sigma A2220)

text: Sigma

text: anti-3PGDH (6B2, SantaCruz sc-100317)

text: Santa Cruz

text: Flp-In 293 T-Rex (Life technologies)

text: Homo sapiens

characteristic: organism

text: HEK293 cells

text: FLAG only:PHGDH RIPiT-Seq

characteristic: title


characteristic: External Id

text: live

text: Generic

text: anti-FLAG M2 (Sigma A2220)

text: Sigma

text: anti-Y14 (4C4; Sigma Y1253)

text: Sigma

text: Flp-In 293 T-Rex (Life technologies)

text: Homo sapiens

text: HEK293 cells

text: FLAG-eIF4AIII:Y14 Rep 1 RIPiT-Seq


characteristic: INSDC center name

text: live

text: Generic

text: anti-FLAG M2 (Sigma A2220)

text: Sigma

text: anti-Y14 (4C4; Sigma Y1253)

text: Sigma

text: Flp-In 293 T-Rex (Life technologies)

text: Homo sapiens

text: HEK293 cells

text: FLAG-eIF4AIII:Y14 Rep 2 RIPiT-Seq


characteristic: INSDC first public

text: live

text: Generic

text: anti-FLAG M2 (Sigma A2220)

text: Sigma

text: anti-eIF4AIII (2256C1, SantaCruz sc-81263)

text: Santa Cruz

text: Flp-In 293 T-Rex (Life technologies)

text: Homo sapiens

text: HEK293 cells

text: FLAG-Magoh:eIF4AIII Rep 1 RIPiT-Seq


characteristic: INSDC last update

text: live

text: Generic

text: anti-FLAG M2 (Sigma A2220)

text: Sigma

text: Santa Cruz

text: Flp-In 293 T-Rex (Life technologies)

text: Homo sapiens

text: HEK293 cells

text: FLAG-Magoh:eIF4AIII Rep 2 RIPiT-Seq


text: live

text: Generic

characteristic: NCBI submission model

text: anti-FLAG M2 (Sigma A2220)

text: Sigma

text: Sigma

text: Flp-In 293 T-Rex (Life technologies)

text: Homo sapiens

text: HEK293 cells

text: FLAG-Magoh:eIF4AIII Rep 3 RIPiT-Seq


text: live

text: Generic

characteristic: NCBI submission package

text: anti-FLAG M2 (Sigma A2220)

text: Sigma

text: anti-Y14 (4C4; Sigma Y1253)

text: Sigma

text: Flp-In 293 T-Rex (Life technologies)

text: Homo sapiens

text: HEK293 cells

text: FLAG-eIF4AIII:Y14 (+ formald) RIPiT-Seq


text: live

text: Generic

characteristic: SRA accession

text: anti-FLAG M2 (Sigma A2220)

text: Sigma

text: Flp-In 293 T-Rex (Life technologies)

text: Homo sapiens

text: HEK293 cells

text: FLAG-eIF4AIII-HMW RIP-Seq


text: live

text: Generic

text: Flp-In 293 T-Rex (Life technologies)

text: Homo sapiens

text: HEK293 cells

text: RNA-Seq


text: live

text: Generic

text: Flp-In 293 T-Rex (Life technologies)

text: Homo sapiens

text: HEK293 cells

text: Nuclear mRNP protection (mRNP-Seq)


text: live

text: Generic

text: anti-FLAG M2 (Sigma A2220)

characteristic: antibody 1

text: Sigma

text: anti-Y14 (4C4; Sigma Y1253)

text: Sigma

text: Flp-In 293 T-Rex (Life technologies)

text: Homo sapiens

text: HEK293 cells

text: FLAG-Magoh:eIF4AIII-long RIPiT-Seq


text: National Academy of Agricultural Science

text: live

text: Generic

text: cDNA was inserted between attB1 and attB2 of pDONR222 vector at 5' and 3' with BsrGI.

characteristic: description

text: Trachurus japonicus

text: muscle

characteristic: tissue-type

text: cDNA library of Trachurus japonicas obtained from the Korea Ocean


text: Bose Institute

text: live

text: Generic

characteristic: cultivar

text: A Suppression subtractive hybridization (SSH) library was created using the Clontech PCR-Select cDNA Subtraction Kit using the mRNA from the T9 leaves. The secondary PCR product was non-directionally cloned in pGEM-T easy vector (Promega) and sequenced.

text: Vigna mungo

text: leaf

text: SSH library of Vigna mungo (T9)


text: GIGA-R and Faculty of Veterinary Medicine, University of Liege

text: live

text: Generic

text: adult

characteristic: dev-stage

text: testis

characteristic: organ

text: Bos taurus

text: male

characteristic: sex

text: Belgian Blue Cattle

characteristic: strain

text: RNF212 EST from bovine testis


text: Broad Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Generic

characteristic: biosamplemodel

characteristic: lsid

text: Saprolegnia diclina VS20

characteristic: organism

characteristic: sample barcode

text: Genomic DNA

characteristic: sample type

text: Saprolegnia diclina VS20 Genomic DNA sample 29626.0


characteristic: External Id

text: Beijing Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Salinas

text: Lactuca sativa

text: Sample from Lactuca sativa

characteristic: title


mferiruminatoris

text: icipe

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

characteristic: collection date

text: This mycoplasma strain was isolated from joints of an Alpine ibex deceased at the Berlin Zoo in 1993

characteristic: description

text: Germany

characteristic: geo loc name

text: alpine ibex

characteristic: host

text: joints

characteristic: isolation source

text: Mycoplasma feriruminatoris

text: Whole genome sequence of Mycoplasma feriruminatoris

text: type strain of Mycoplasma feriruminatoris

characteristic: type material


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

characteristic: biorep

characteristic: cell

text: lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: RnaPet

characteristic: datatype

text: RNA Paired-End Tag

characteristic: datatype description

text: GIS

characteristic: lab

text: Ruan - Genome Institute of Singapore

characteristic: lab description

characteristic: labexpid

text: clone-free

characteristic: labversion

text: cytosol

characteristic: localization

text: The fluid between the cells outer membrane and the nucleus

characteristic: localization description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description


Bacteroides thetaiotaomicron dnLKV9

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: USA: St. Louis, MO

text: feces

characteristic: isolation-source

text: Bacteroides thetaiotaomicron dnLKV9

text: Mouse

characteristic: specific host

characteristic: strain

text: Generic sample from Bacteroides thetaiotaomicron dnLKV9

characteristic: title


Bacteroides vulgatus dnLKV7

text: Broad Institute

text: live

text: Generic

text: USA: St. Louis, MO

text: feces

text: Phocaeicola vulgatus dnLKV7

characteristic: organism

text: Mouse

text: Generic sample from Bacteroides vulgatus dnLKV7


Bacteroides uniformis dnLKV2

text: Broad Institute

text: live

text: Generic

text: USA: St. Louis, MO

text: feces

text: Bacteroides uniformis dnLKV2

text: Mouse

text: Generic sample from Bacteroides uniformis dnLKV2


Bacteroides massiliensis dnLKV3

text: Broad Institute

text: live

text: Generic

text: USA: St. Louis, MO

text: feces

text: Phocaeicola sartorii

text: Mouse

text: Generic sample from Bacteroides massiliensis dnLKV3


Parabacteroides goldsteinii dnLKV18

text: Broad Institute

text: live

text: Generic

text: USA: St. Louis, MO

text: feces

text: Parabacteroides goldsteinii dnLKV18

text: Mouse

text: Generic sample from Parabacteroides goldsteinii dnLKV18


Lachnospiraceae bacterium A4

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Lachnospiraceae bacterium A4

text: Mouse

text: Generic sample from Lachnospiraceae bacterium A4


Eubacterium bacterium 14-2

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Eubacterium sp. 14-2

text: Mouse

text: Generic sample from Eubacterium sp. 14-2


Lachnospiraceae bacterium 3-1

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Lachnospiraceae bacterium 3-1

text: Mouse

text: Generic sample from Lachnospiraceae bacterium 3-1


Lachnospiraceae bacterium 28-4

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Lachnospiraceae bacterium 28-4

text: Mouse

text: Generic sample from Lachnospiraceae bacterium 28-4


Lachnospiraceae bacterium M18-1

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Lachnospiraceae bacterium M18-1

text: Mouse

text: Generic sample from Lachnospiraceae bacterium M18-1


Lachnospiraceae bacterium COE1

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Lachnospiraceae bacterium MD335

text: Mouse

text: Generic sample from Lachnospiraceae bacterium COE1


Lachnospiraceae bacterium A2

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Lachnospiraceae bacterium A2

text: Mouse

text: Generic sample from Lachnospiraceae bacterium A2


Enterorhabdus caecimuris B7

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Adlercreutzia caecimuris B7

text: Mouse

text: Generic sample from Enterorhabdus caecimuris B7

text: type strain of Enterorhabdus caecimuris

characteristic: type material


Paenibacillus barengoltzii G22

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Paenibacillus barengoltzii G22

text: Mouse

text: Generic sample from Paenibacillus barengoltzii G22


Anaerotruncus bacterium G3

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Anaerotruncus sp. G3(2012)

text: Mouse

text: Generic sample from Anaerotruncus sp. G3(2012)


Firmicute bacterium M10-2

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Firmicutes bacterium M10-2

text: Mouse

text: Generic sample from Firmicutes bacterium M10-2


Oscillibacter sp. 1-3

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Oscillibacter sp. 1-3

text: Mouse

text: Generic sample from Oscillibacter sp. 1-3


Dorea sp. 5-2

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Dorea sp. 5-2

text: Mouse

text: Generic sample from Dorea sp. 5-2


Lachnospiraceae bacterium 3-2

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Lachnospiraceae bacterium MD308

text: Mouse

text: Generic sample from Lachnospiraceae bacterium 3-2


Lachnospiraceae bacterium 10-1

text: Broad Institute

text: live

text: Generic

text: USA: Birmingham, AL

text: Ceca

text: Lachnospiraceae bacterium 10-1

text: Mouse

text: Generic sample from Lachnospiraceae bacterium 10-1


Clostridium bacterium ASF356

text: Broad Institute

text: live

text: Generic

text: USA: Iowa

text: Cecum

text: Clostridium sp. MD294

text: Mouse

text: Generic sample from Clostridium sp. ASF356


Lactobacillus murinus ASF361

text: Broad Institute

text: live

text: Generic

text: USA: Iowa

text: Cecum

text: Ligilactobacillus murinus ASF361

text: Mouse

text: Generic sample from Lactobacillus murinus ASF361


Eubacterium plexicaudatum ASF492

text: Broad Institute

text: live

text: Generic

text: USA: Iowa

text: Cecum

text: Eubacterium plexicaudatum ASF492

text: Mouse

text: Generic sample from Eubacterium plexicaudatum ASF492


Clostridium bacterium ASF502

text: Broad Institute

text: live

text: Generic

text: USA: Iowa

text: Cecum

text: Schaedlerella arabinosiphila

text: Mouse

text: ASF 502

text: Generic sample from Clostridium sp. ASF502


Parabacteroides bacterium ASF519

text: Broad Institute

text: live

text: Generic

text: USA: Iowa

text: Cecum

text: Parabacteroides sp. ASF519

text: Mouse

text: Generic sample from Parabacteroides sp. ASF519


Helicobacter bilis WiWa

text: Broad Institute

text: live

text: Generic

text: USA: Iowa

text: Cecum

text: Helicobacter bilis WiWa

text: Mouse

text: WiWa

text: Generic sample from Helicobacter bilis WiWa


Escherichia coli SWW33

text: Broad Institute

text: live

text: Generic

text: USA: Iowa

text: Cecum

text: Escherichia coli SWW33

text: Mouse

text: Generic sample from Escherichia coli SWW33


text: Molecular Biology, Radboud University

text: live

text: Generic

text: whole embryo

characteristic: cell type

text: H3K4me3 (Abcam, ab8580)

characteristic: chip antibody

text: blastula (stage 9)

characteristic: developmental stage

text: Xenopus tropicalis

text: whole embryo


characteristic: External Id

text: Molecular Biology, Radboud University

characteristic: INSDC center name

text: live

text: Generic

text: whole embryo

text: H3K4me3 (Abcam, ab8580)

text: gastrula (stage 12)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: whole embryo

text: H3K4me3 (Abcam, ab8580)

text: neurula (stage 16)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: whole embryo

text: H3K4me3 (Abcam, ab8580)

text: tailbud (stage 30)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: whole embryo

text: H3K27me3 (Upstate/Millipore, 07-449)

text: blastula (stage 9)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

characteristic: SRA accession

text: whole embryo

text: H3K27me3 (Upstate/Millipore, 07-449)

text: gastrula (stage 12)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

text: whole embryo

text: H3K27me3 (Upstate/Millipore, 07-449)

text: neurula (stage 16)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

text: whole embryo

text: H3K27me3 (Upstate/Millipore, 07-449)

text: tailbud (stage 30)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

text: whole embryo

text: RNAPII (Diagenode, AC-055-100)

text: blastula (stage 9)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

text: whole embryo

text: RNAPII (Diagenode, AC-055-100)

text: gastrula (stage 12)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

text: whole embryo

text: RNAPII (Diagenode, AC-055-100)

text: neurula (stage 16)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

text: whole embryo

text: RNAPII (Diagenode, AC-055-100)

text: tailbud (stage 30)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

text: whole embryo

text: EZH2 Active Motif 39103

text: blastula (stage 9)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

text: whole embryo

text: Jarid2 (Abcam ab48137)

text: blastula (stage 9)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

text: whole embryo

text: H3K4me1 (Diagenode CS-037-100)

text: blastula (stage 9)

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

text: live

text: Generic

text: whole embryo

text: tailbud (stage 30)

text: Xenopus tropicalis

text: whole embryo

text: Input


text: UNICAMP

text: live

text: Generic

characteristic: collection date

text: Brazil: Campinas

characteristic: geo loc name

text: mycelium

characteristic: isolation-source

text: Trichoderma harzianum IOC 3844

text: IOC 3844

text: Trichoderma harzianum

characteristic: teleomorph

text: Generic sample from Trichoderma harzianum IOC 3844


Botrytis Infected lettuce

text: Genome Center UC Davis CA

text: live

text: Generic

text: Lactuca sativa cv. Salinas after inoculation with Botrytis cinerea B05.10

characteristic: description

text: Lactuca sativa

characteristic: organism

text: Lactuca sativa cv. Salinas infected with Botrytis cinerea

characteristic: title


text: Center for Biomedical Informatics, Harvard Medical School

text: live

text: Generic

text: Primary Human Umbilical Vein Endothelial Cells

characteristic: cell type

characteristic: chip antibody

text: Abcam

characteristic: chip antibody manufactuer

text: Homo sapiens

characteristic: passages

characteristic: time

text: H3K27ac Hour 0

text: VEGF

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Abcam

text: Homo sapiens

text: H3K27ac Hour 1

text: VEGF


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Abcam

text: Homo sapiens

text: H3K27ac Hour 4

text: VEGF


text: live

text: Generic

text: Abcam

text: Homo sapiens

characteristic: organism

text: H3K27ac Hour 12

text: VEGF


text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

text: p300 Hour 0 Rep 1

characteristic: title

text: VEGF


text: live

text: Generic

characteristic: cell type

text: Santa Cruz

text: Homo sapiens

text: p300 Hour 1 Rep 1

text: VEGF


text: live

text: Generic

characteristic: chip antibody

text: Santa Cruz

text: Homo sapiens

text: p300 Hour 4 Rep 1

text: VEGF


text: live

text: Generic

text: Santa Cruz

characteristic: chip antibody manufactuer

text: Homo sapiens

text: p300 Hour 12 Rep 1

text: VEGF


text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

characteristic: passages

text: p300 Hour 0 Rep 2

text: VEGF


text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

characteristic: time

text: p300 Hour 1 Rep 2

text: VEGF


text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

text: p300 Hour 4 Rep 2

text: VEGF

characteristic: treatment


characteristic: External Id

text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

text: p300 Hour 12 Rep 2

text: VEGF


characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: RNA-seq Hour 0

text: VEGF


characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: RNA-seq Hour 1

text: VEGF


characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: RNA-seq Hour 4

text: VEGF


characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

text: RNA-seq Hour 12

text: VEGF


text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: DHS Hour 0 Rep 1

text: VEGF


text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: DHS Hour 1 Rep 1

text: VEGF


text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: DHS Hour 4 Rep 1

text: VEGF


text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: DHS Hour 12 Rep 1

text: VEGF


text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: DHS Hour 0 Rep 2

text: VEGF


text: live

text: Generic

text: Homo sapiens

text: DHS Hour 1 Rep 2

characteristic: title

text: VEGF


text: live

text: Generic

characteristic: cell type

text: Homo sapiens

text: DHS Hour 4 Rep 2

text: VEGF


text: live

text: Generic

text: Homo sapiens

text: DHS Hour 12 Rep 2

text: VEGF


text: live

text: Generic

characteristic: chip antibody

text: Santa Cruz

text: Homo sapiens

text: ETS Hour 0

text: VEGF


text: live

text: Generic

text: Santa Cruz

characteristic: chip antibody manufactuer

text: Homo sapiens

text: ETS1 Hour 1

text: VEGF


text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

characteristic: passages

text: ETS1 Hour 4

text: VEGF


text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

characteristic: time

text: ETS1 Hour 12

text: VEGF


text: live

text: Generic

text: Homo sapiens

text: Histone Input 1

text: VEGF

characteristic: treatment


characteristic: External Id

text: live

text: Generic

text: Homo sapiens

text: Histone Input 2

text: VEGF


characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: ETS1 Input


characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: p300 Input


text: Biotech Research and Innovation Centre

characteristic: INSDC last update

text: live

text: Generic

characteristic: age

text: head

characteristic: body part

text: H3K4me3 (Cell Signaling, C42D8)

text: Heterozygote

characteristic: genotype/variation

text: Mus musculus

text: E8.5 head

characteristic: strain


text: Biotech Research and Innovation Centre

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: head

text: H3K27me3 (Cell Signaling, D18C8)

text: Heterozygote

text: Mus musculus

text: E8.5 head


text: Biotech Research and Innovation Centre

text: live

text: Generic

text: head

text: Rabbit IgG, sigma

characteristic: chip antibody

text: Heterozygote

text: Mus musculus

characteristic: organism

text: E8.5 head

characteristic: title


text: Biotech Research and Innovation Centre

text: live

text: Generic

text: head

text: H3K4me3 (Cell Signaling, C42D8)

text: Jarid1b knockout

text: Mus musculus

text: E8.5 head


text: Biotech Research and Innovation Centre

text: live

text: Generic

text: head

text: H3K27me3 (Cell Signaling, D18C8)

text: Jarid1b knockout

text: Mus musculus

text: E8.5 head


Bacillus anthracis Ames

text: National Institute of Allergy and Infectious Diseases

text: live

text: Generic

text: Bacillus anthracis str. 'Ames Ancestor'

text: 'Ames Ancestor'

text: Bacillus anthracis


Fungi in house dust

text: UC Berkeley

text: live

text: Generic

text: Indoors

characteristic: biome

text: August, 2011; January, 2012

characteristic: collection date

text: Environmental sample

characteristic: description

text: San Francisco Bay Area, CA

characteristic: geo loc name

text: Settled house dust

characteristic: isolation-source

text: dust metagenome

text: Generic sample from house dust


ant-poly

characteristic: External Id

text: Chungbuk National University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: marine metagenome

text: Generic sample from antarctic metagenome


text: Kumamoto University

text: live

text: Generic

text: embryonic stem cell

characteristic: cell type

text: ES cells Mol/MSM-1

characteristic: cell-line

text: Country: Japan

text: Mus musculus

text: male

characteristic: sex

text: MSM/Ms

characteristic: strain

text: EGTC Gene Trap Library (ES cells Mol/MSM-1)

characteristic: vector


text: Boston University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mus musculus

text: miRNAs from the Livers of Zcchc11-/- and littermate wildtype mice.


text: Genome Research Foundation

text: live

text: Generic

text: Homo sapiens

characteristic: organism

characteristic: title


text: The Institute of Medicinal Plant Development

text: live

text: Generic

text: Lonicera japonica

text: Lonicera japonica


text: LSBM, RCAST, University of Tokyo

text: live

text: Generic

text: human umbilical vein endothelial cells

text: wild type

characteristic: genotype/variation

text: Homo sapiens

text: HUVEC_Control siRNA

text: Control siRNA


characteristic: External Id

text: LSBM, RCAST, University of Tokyo

text: live

text: Generic

text: human umbilical vein endothelial cells

text: WTAP knockdown

text: Homo sapiens

text: HUVEC_WTAP siRNA

text: WTAP siRNA


text: LSBM, RCAST, University of Tokyo

characteristic: INSDC center name

text: live

text: Generic

text: human umbilical vein endothelial cells

text: Virilizer knockdown

text: Homo sapiens

text: HUVEC_Virilizer siRNA

text: Virilizer siRNA


text: State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology

characteristic: INSDC first public

text: live

text: Generic

text: 7DAG seedlings

characteristic: age

characteristic: chip antibody

text: Millipore

characteristic: chip antibody manufactuer

text: Dongjin

characteristic: cultivar

text: WT

characteristic: genotype

text: Oryza sativa

text: 7DAG seedlings

text: seedling

characteristic: tissue

text: WT H3K4me3 ChIP-seq


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: 7DAG seedlings

text: Millipore

text: Dongjin

text: Oryza sativa

text: 7DAG seedlings

text: seedling

text: jmj703 H3K4me3 ChIP-seq


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 7DAG seedlings

text: Dongjin

text: WT

text: Oryza sativa

text: 7DAG seedlings

text: seedling

text: WT RNA-seq


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: 7DAG seedlings

text: Dongjin

text: Oryza sativa

text: 7DAG seedlings

text: seedling

text: jmj703 RNA-seq


text: CNRS - UPMC

text: live

text: Generic

text: G1 cells were isolated from an asynchronous population by centrifugal elutriation (Beckman: JE-5.0 Elutriator Rotor and Avanti J-26 XP centrifuge). Centrifugal elutriation is a technique for the separation of cells by velocity sedimentation (Pretlow et al., 1979). Asynchronous cells from an exponential culture in YPD were separated in different fractions. The fraction containing more than 95% of little G1 cells was centrifuged, washed and resuspend in YPD. Cells were synchronously released into S-phase at 23*C in YPD medium and one sample was taken every 10 minutes during 150 minutes. Genomic DNAs from 6 samples covering S phase (from 80 to 150 minutes) were extracted using the genomic-tip 20/G isolation kit (Qiagen).

characteristic: description

text: Lachancea kluyveri NRRL Y-12651

characteristic: organism

text: 1st time of Lachancea kluyveri S-phase time-course experiment

characteristic: title


characteristic: External Id

text: UPMC-CNRS

characteristic: INSDC center name

text: live

characteristic: Mean DNA quantity

text: Generic

text: 1st time point of an S-phase Time-course experiment

text: a

characteristic: mat

text: Lachancea kluyveri NRRL Y-12651

characteristic: origin

characteristic: strain

text: Generic sample from Lachancea kluyveri


text: UPMC-CNRS

characteristic: INSDC first public

text: live

text: Generic

text: 2nd time point of an S-phase Time-course experiment

text: a

text: Lachancea kluyveri NRRL Y-12651

text: Generic sample from Lachancea kluyveri


text: UPMC-CNRS

text: live

text: Generic

text: 3rd time point of an S-phase Time-course experiment

text: a

text: Lachancea kluyveri NRRL Y-12651

text: Generic sample from Lachancea kluyveri


text: UPMC-CNRS

text: live

text: Generic

text: 4th time point of an S-phase Time-course experiment

text: a

text: Lachancea kluyveri NRRL Y-12651

text: Generic sample from Lachancea kluyveri


text: UPMC-CNRS

text: live

text: Generic

text: 5th time point of an S-phase Time-course experiment

text: a

text: Lachancea kluyveri NRRL Y-12651

text: Generic sample from Lachancea kluyveri


text: UPMC-CNRS

text: live

text: Generic

text: 6th time point of an S-phase Time-course experiment

text: a

text: Lachancea kluyveri NRRL Y-12651

text: Generic sample from Lachancea kluyveri


text: University of Wisconsin - Madison

text: live

text: Generic

text: Affinity purified FNR polyclonal antibody

characteristic: antibody

text: Anaerobic Cultures

characteristic: growth condition

text: Escherichia coli str. K-12 substr. MG1655star

text: Anaerobic Cultures

text: Wild Type K-12

characteristic: substrain

text: FNR IP ChIP-seq Anaerobic A


text: University of Wisconsin - Madison

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Anaerobic Cultures

text: Anaerobic Cultures

text: Wild Type K-12

text: FNR IP ChIP-seq Anaerobic B


text: University of Wisconsin - Madison

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA Polymerase σ70 monoclonal antibody from NeoClone (W0004)

text: Aerobic Cultures

text: Aerobic Cultures

text: Wild Type K-12

text: σ70 IP ChIP-seq Aerobic A


text: University of Wisconsin - Madison

text: live

text: Generic

text: Anaerobic Cultures

characteristic: organism

text: Anaerobic Cultures

text: Wild Type K-12

text: σ70 IP ChIP-seq Anaerobic A

characteristic: title


characteristic: External Id

text: University of Wisconsin - Madison

characteristic: INSDC center name

text: live

text: Generic

text: INPUT

text: Aerobic Cultures

text: Aerobic Cultures

text: Wild Type K-12

text: aerobic INPUT DNA


text: University of Wisconsin - Madison

text: live

text: Generic

text: INPUT

text: Anaerobic Cultures

text: Anaerobic Cultures

text: Wild Type K-12

text: anaerobic INPUT DNA


text: University of Crete

text: live

text: Generic

characteristic: collection date

text: Total DNA extraction from water column

characteristic: description

text: Greece: Crete

characteristic: geo loc name

text: seawater

characteristic: isolation-source

text: marine metagenome

text: Generic sample from Bacteria


text: Mcgill University

characteristic: INSDC first public

text: live

text: Generic

text: RNA-seq from HeLa cells treated with control siRNAs for 72 hrs. Libraries were prepared from total human RNA and sequenced using the Illumina HiSeq technology

text: Homo sapiens


text: Paul, Institut für Zoophysiologie, Westfälische Wilhelms-Universität Münster

text: live

text: Generic

text: young adult

characteristic: age

text: wild type

characteristic: genotype

text: Caenorhabditis elegans

text: worm total lysates

text: N2 Bristol; wildtype

characteristic: strain

text: WT


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: young adult

text: pmk-1(km25) IV

text: Caenorhabditis elegans

text: worm total lysates

text: KU25; pmk-1 deletion mutant

text: KU


text: Dep. of Epigenetics Regulations, Institute of Molecular Genetics of the ASCR

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Dicer flox/- mouse embryonic stem cells

characteristic: cell line

text: Mus musculus

characteristic: passages

text: cell line

text: Dicer flox/- (mESCs)


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

characteristic: organism

text: cell line

text: Dicer -/- (mESCs); this cell line was used for all transfection experiments

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Dgcr8 -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dgcr8 -/- (mESCs)


text: live

text: Generic

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer -/- (mESCs) transfected with pEF-1_mDcrS plasmid; clone S4

characteristic: transfected plasmid


characteristic: INSDC first public

text: live

text: Generic

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer -/- (mESCs) transfected with pEF-1_mDcrS plasmid; clone S11


text: live

text: Generic

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer -/- (mESCs) transfected with pEF-1_mDcO plasmid; clone O2


text: live

text: Generic

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer -/- (mESCs) transfected with pEF-1_mDcO plasmid; clone O3


text: live

text: Generic

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer -/- (mESCs) transfected with pEF-1_mDcO plasmid; clone O4


text: live

text: Generic

text: Dicer flox/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer flox/- mESCs transfected with pCAG-EGFP_MosIR expressing long hairpin derived from Mos gene


text: live

text: Generic

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer -/- mESCs transfected with pCAG-EGFP_MosIR expressing long hairpin derived from Mos gene


text: live

text: Generic

text: Dgcr8 -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dgcr8 -/- mESCs transfected with pCAG-EGFP_MosIR expressing long hairpin derived from Mos gene


text: live

text: Generic

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer -/- mESCs, clone S4 transfected with pCAG-EGFP_MosIR expressing long hairpin derived from Mos gene


text: live

text: Generic

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer -/- mESCs, clone S11 transfected with pCAG-EGFP_MosIR expressing long hairpin derived from Mos gene


text: live

text: Generic

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer -/- mESCs, clone O2 transfected with pCAG-EGFP_MosIR expressing long hairpin derived from Mos gene


text: live

text: Generic

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer -/- mESCs, clone O3 transfected with pCAG-EGFP_MosIR expressing long hairpin derived from Mos gene


text: live

text: Generic

text: Dicer -/- mouse embryonic stem cells

text: Mus musculus

text: cell line

text: Dicer -/- mESCs, clone O4 transfected with pCAG-EGFP_MosIR expressing long hairpin derived from Mos gene


text: live

text: Generic

text: Mus musculus

text: cell line

text: 3T3 cells transfected with pCAG-EGFP_MosIR expressing long hairpin derived from mouse Mos gene


text: live

text: Generic

text: Mus musculus

text: cell line

text: 3T3 cells co-transfected with pCAG-EGFP_MosIR and pEF-1_mDcrS expressing a somatic form of a murine Dicer.

text: pCAG-EGFP_MosIR + pcDNA4-DicerS-myc-His


text: Dep. of Epigenetics Regulations, Institute of Molecular Genetics of the ASCR

text: live

text: Generic

text: Mus musculus

text: cell line

text: 3T3 cells co-transfected with pCAG-EGFP_MosIR and pEF-1_mDcrO expressing an oocyte form of a murine Dicer

text: pCAG-EGFP_MosIR + pcDNA4-DicerO-myc-His


BAF-C

text: University of Hawaii

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.wastewater

text: Biofilm

characteristic: biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.wastewater

characteristic: env package

text: Coated beads

characteristic: feature

text: metagenome

characteristic: investigation type

text: BAF reactor

characteristic: isolation source

text: Biofilm

characteristic: material

text: biofilm metagenome

text: Biological Aerated Filters

characteristic: project name

text: Biological Aerated Filters

text: MIMS Environmental/Metagenome sample from Bacteria

text: Activated sludge


BAF-A

text: University of Hawaii

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.wastewater

characteristic: NCBI submission package

text: Biofilm

text: Keywords: GSC:MIxS;MIMS:5.0

text: MIGS/MIMS/MIMARKS.wastewater

text: Coated beads

text: metagenome

text: BAF reactor

text: Biofilm

text: biofilm metagenome

text: Biological Aerated Filters

text: Biological Aerated Filters

text: Activated sludge


BAF-B

characteristic: External Id

text: University of Hawaii

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.wastewater

text: Biofilm

text: Keywords: GSC:MIxS;MIMS:5.0

text: MIGS/MIMS/MIMARKS.wastewater

text: Uncoated beads

text: metagenome

text: BAF reactor

text: Biofilm

text: biofilm metagenome

characteristic: organism

text: Biological Aerated Filters

text: Biological Aerated Filters

characteristic: title

text: Activated sludge


BAF-UC

text: University of Hawaii

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.wastewater

text: Biofilm

text: Keywords: GSC:MIxS;MIMS:5.0

text: MIGS/MIMS/MIMARKS.wastewater

text: Uncoated beads

text: metagenome

text: BAF reactor

text: Biofilm

text: biofilm metagenome

text: Biological Aerated Filters

text: Biological Aerated Filters

text: Activated sludge


Orpinomyces C1A Genome Sequencing

text: Oklahoma State University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: 9.5x PacBio Reads were corrected using 100x Illumina HiSeq Reads

text: Pecoramyces ruminantium

text: Genomic Sequneicng of Anaerobic Fungal Rumen Isolate Orpinoymces C1A


Shewanella piezotolerans

text: BGI Research Institute

text: live

text: Generic

text: Shewanella piezotolerans

text: RNA-seq Shewanella_piezotolerans


text: Biomol-Informatics

text: live

text: Generic

text: Klebsiella pneumoniae subsp. pneumoniae KpO3210

characteristic: strain


text: VIB - KULeuven

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Segregant 26B - superior parent for low glycerol/ethanol ratio


text: VIB - KULeuven

text: live

text: Generic

text: Saccharomyces cerevisiae

text: selected segregant pool low glycerol/ ethanol ratio


text: VIB - KULeuven

text: live

text: Generic

text: Saccharomyces cerevisiae

text: unselected segregant pool low glycerol/ ethanol ratio


text: CeBiTec Bielefeld

text: live

text: Generic

text: Total DNA extract from Wadden Sea surface sediment, coll. date 03-23-2010 at low tide, was prepared by enzymatic lysis, chloroform extraction and purification by ion exchange chromatography.

characteristic: description

text: marine metagenome

text: Wadden Sea Sediment Metagenome March 2010_1a


text: CeBiTec Bielefeld

text: live

text: Generic

text: Total DNA extract from Wadden Sea surface sediment, coll. date 10-24-2009 at low tide, was prepared by enzymatic lysis, chloroform extraction and purification by ion exchange chromatography.

text: marine metagenome

text: Wadden Sea Sediment Metagenome October 2009


text: CeBiTec Bielefeld

text: live

text: Generic

text: marine metagenome

text: Wadden Sea Sediment Metagenome March 2010_1b


text: CeBiTec Bielefeld

text: live

text: Generic

text: marine metagenome

text: Wadden Sea Sediment Metagenome March 2010_2


text: Mcgill University

text: live

text: Generic

text: RNA-seq from HeLa cells treated with PAPBN1 specific siRNAs for 72 hrs. Libraries were prepared from total human RNA and sequenced using the Illumina HiSeq technology

text: Homo sapiens

text: HeLa cells treated with PABPN1 specific siRNAs for 72 hrs


text: German Center for Cancer Research

text: live

text: Generic

text: adult

characteristic: developmental stage

text: Schistocerca gregaria

text: brain

text: leuven

text: brain

characteristic: tissue


text: German Center for Cancer Research

text: live

text: Generic

text: adult

text: Schistocerca gregaria

text: mtg

text: leuven

text: metathoracic ganglia (mtg)


Island1 Fragmented litter1

text: Swedish University of Agricultural Sciences

text: live

text: Small

characteristic: Island_size class

text: Generic

text: boreal forest

characteristic: biome

characteristic: collection date

text: 0.02-0.07 m

characteristic: depth

text: amplicon of fungal ITS2 region

text: 430 m

characteristic: elev

characteristic: feature

text: Sweden: island in one of two large lakes near Arjeplog

characteristic: geo loc name

text: 66.0515051 N 17.8900543 E

characteristic: lat lon

text: Fragmented Litter1 layer

characteristic: material

text: soil metagenome

text: ancient forest

characteristic: previous land use

text: The island study - boreal forest soil metagenomes

text: Material from 8 cores was pooled within island, freeze-dried and ground

characteristic: samp mat process

text: 120 cm long 3 cm diameter soil corer

text: Island1 Fragmented litter1 metagenome


Island1 Fragmented litter2

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Small

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: boreal forest

text: 0.07-0.10 m

text: amplicon of fungal ITS2 region

text: 430 m

text: 66.0515051 N 17.8900543 E

text: Fragmented Litter2 layer

text: soil metagenome

characteristic: organism

text: ancient forest

characteristic: project name

text: 120 cm long 3 cm diameter soil corer

text: Island1 Fragmented litter2 metagenome

characteristic: title


Island1 Humus1

text: live

text: Small

characteristic: Island_size class

text: Generic

characteristic: SRA accession

text: boreal forest

characteristic: biome

characteristic: collection date

text: 0.10-0.16 m

characteristic: depth

text: amplicon of fungal ITS2 region

characteristic: description

text: 430 m

characteristic: elev

characteristic: feature

text: 66.0515051 N 17.8900543 E

text: Humus1 layer

text: soil metagenome

text: ancient forest

text: 120 cm long 3 cm diameter soil corer

text: Island1 Humus1 metagenome


Island1 Humus2

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Small

text: Generic

text: boreal forest

text: 0.16-0.20 m

text: amplicon of fungal ITS2 region

text: 430 m

characteristic: geo loc name

text: 66.0515051 N 17.8900543 E

characteristic: lat lon

text: Humus2 layer

characteristic: material

text: soil metagenome

text: ancient forest

characteristic: previous land use

characteristic: samp mat process

text: 120 cm long 3 cm diameter soil corer

text: Island1 Humus2 metagenome


Island1 Humus3

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Small

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: boreal forest

text: 0.20-0.40 m

text: amplicon of fungal ITS2 region

text: 430 m

text: 66.0515051 N 17.8900543 E

text: Humus3 layer

text: soil metagenome

characteristic: organism

text: ancient forest

characteristic: project name

text: 120 cm long 3 cm diameter soil corer

text: Island1 Humus3 metagenome

characteristic: title


Island1 Humus4

text: live

text: Small

characteristic: Island_size class

text: Generic

characteristic: SRA accession

text: boreal forest

characteristic: biome

characteristic: collection date

text: 0.40-0.60 m

characteristic: depth

text: amplicon of fungal ITS2 region

characteristic: description

text: 430 m

characteristic: elev

characteristic: feature

text: 66.0515051 N 17.8900543 E

text: Humus4 layer

text: soil metagenome

text: ancient forest

text: 120 cm long 3 cm diameter soil corer

text: Island1 Humus4 metagenome


Island1 Humus5

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Small

text: Generic

text: boreal forest

text: 0.60-0.80 m

text: amplicon of fungal ITS2 region

text: 430 m

characteristic: geo loc name

text: 66.0515051 N 17.8900543 E

characteristic: lat lon

text: Humus5 layer

characteristic: material

text: soil metagenome

text: ancient forest

characteristic: previous land use

characteristic: samp mat process

text: 120 cm long 3 cm diameter soil corer

text: Island1 Humus5 metagenome


Island1 Litter1

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Small

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: boreal forest

text: 0 m

text: amplicon of fungal ITS2 region

text: 430 m

text: 66.0515051 N 17.8900543 E

text: Litter1 layer

text: soil metagenome

characteristic: organism

text: ancient forest

characteristic: project name

text: 120 cm long 3 cm diameter soil corer

text: Island1 Litter1 metagenome

characteristic: title


Island1 Litter2

text: live

text: Small

characteristic: Island_size class

text: Generic

characteristic: SRA accession

text: boreal forest

characteristic: biome

characteristic: collection date

text: 0-0.02 m

characteristic: depth

text: amplicon of fungal ITS2 region

characteristic: description

text: 430 m

characteristic: elev

characteristic: feature

text: 66.0515051 N 17.8900543 E

text: Litter2 layer

text: soil metagenome

text: ancient forest

text: 120 cm long 3 cm diameter soil corer

text: Island1 Litter2 metagenome


Island10 Fragmented litter1

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Large

text: Generic

text: boreal forest

text: 0.02-0.07 m

text: amplicon of fungal ITS2 region

text: 430 m

characteristic: geo loc name

text: 66.0515051 N 17.8900543 E

characteristic: lat lon

text: Fragmented Litter1 layer

characteristic: material

text: soil metagenome

text: ancient forest

characteristic: previous land use

characteristic: samp mat process

text: 120 cm long 3 cm diameter soil corer

text: Island10 Fragmented litter1 metagenome


Island10 Fragmented litter2

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Large

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: boreal forest

text: 0.07-0.10 m

text: amplicon of fungal ITS2 region

text: 430 m

text: 66.0515051 N 17.8900543 E

text: Fragmented Litter2 layer

text: soil metagenome

characteristic: organism

text: ancient forest

characteristic: project name

text: 120 cm long 3 cm diameter soil corer

text: Island10 Fragmented litter2 metagenome

characteristic: title


Island10 Humus1

text: live

text: Large

characteristic: Island_size class

text: Generic

characteristic: SRA accession

text: boreal forest

characteristic: biome

characteristic: collection date

text: 0.10-0.16 m

characteristic: depth

text: amplicon of fungal ITS2 region

characteristic: description

text: 430 m

characteristic: elev

characteristic: feature

text: 66.0515051 N 17.8900543 E

text: Humus1 layer

text: soil metagenome

text: ancient forest

text: 120 cm long 3 cm diameter soil corer

text: Island10 Humus1 metagenome


Island10 Humus2

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Large

text: Generic

text: boreal forest

text: 0.16-0.20 m

text: amplicon of fungal ITS2 region

text: 430 m

characteristic: geo loc name

text: 66.0515051 N 17.8900543 E

characteristic: lat lon

text: Humus2 layer

characteristic: material

text: soil metagenome

text: ancient forest

characteristic: previous land use

characteristic: samp mat process

text: 120 cm long 3 cm diameter soil corer

text: Island10 Humus2 metagenome


Island10 Humus3

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Large

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: boreal forest

text: 0.20-0.40 m

text: amplicon of fungal ITS2 region

text: 430 m

text: 66.0515051 N 17.8900543 E

text: Humus3 layer

text: soil metagenome

characteristic: organism

text: ancient forest

characteristic: project name

text: 120 cm long 3 cm diameter soil corer

text: Island10 Humus3 metagenome

characteristic: title


Island10 Litter1

text: live

text: Large

characteristic: Island_size class

text: Generic

characteristic: SRA accession

text: boreal forest

characteristic: biome

characteristic: collection date

text: 0 m

characteristic: depth

text: amplicon of fungal ITS2 region

characteristic: description

text: 430 m

characteristic: elev

characteristic: feature

text: 66.0515051 N 17.8900543 E

text: Litter1 layer

text: soil metagenome

text: ancient forest

text: 120 cm long 3 cm diameter soil corer

text: Island10 Litter1 metagenome


Island10 Litter2

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Large

text: Generic

text: boreal forest

text: 0-0.02 m

text: amplicon of fungal ITS2 region

text: 430 m

characteristic: geo loc name

text: 66.0515051 N 17.8900543 E

characteristic: lat lon

text: Litter2 layer

characteristic: material

text: soil metagenome

text: ancient forest

characteristic: previous land use

characteristic: samp mat process

text: 120 cm long 3 cm diameter soil corer

text: Island10 Litter2 metagenome


Island11 Fragmented litter1

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Large

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: boreal forest

text: 0.02-0.07 m

text: amplicon of fungal ITS2 region

text: 430 m

text: 66.0515051 N 17.8900543 E

text: Fragmented Litter1 layer

text: soil metagenome

characteristic: organism

text: ancient forest

characteristic: project name

text: 120 cm long 3 cm diameter soil corer

text: Island11 Fragmented litter1 metagenome

characteristic: title


Island11 Fragmented litter2

text: live

text: Large

characteristic: Island_size class

text: Generic

characteristic: SRA accession

text: boreal forest

characteristic: biome

characteristic: collection date

text: 0.07-0.10 m

characteristic: depth

text: amplicon of fungal ITS2 region

characteristic: description

text: 430 m

characteristic: elev

characteristic: feature

text: 66.0515051 N 17.8900543 E

text: Fragmented Litter2 layer

text: soil metagenome

text: ancient forest

text: 120 cm long 3 cm diameter soil corer

text: Island11 Fragmented litter2 metagenome