text: Corden Lab, Molecular Bio and Gen, JHU

characteristic: INSDC last update

text: live

text: Generic

text: Stratalinker

text: Saccharomyces cerevisiae

text: Nab3 HTB with Stratalinker Crosslinking

text: Nab3 HTB with Stratalinker Crosslinking


status: PUBLIC

characteristic: External Id

text: Corden Lab, Molecular Bio and Gen, JHU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: UV Power-Shot 1100 Lamp

tag: attribute

characteristic: crosslinking device

text: Saccharomyces cerevisiae

characteristic: organism

text: Nrd1 HTB Glucose Depletion with Arc Lamp Crosslinking

characteristic: strain

characteristic: title


text: Michael Greenberg, Neurobiology, Harvard Medical School

text: live

text: Generic

text: Unstimulated

characteristic: condition

text: sonication+Mnase digestion

characteristic: fragmentation method

text: Mus musculus

characteristic: sample

text: cultured cortical neurons E16+7DIV


text: live

text: Generic

text: Unstimulated

text: sonication+Mnase digestion

text: Custom Anti-MeCP2 c-terminal antibody

characteristic: ip antibody

text: Mus musculus

text: cultured cortical neurons E16+7DIV


characteristic: INSDC last update

text: live

text: Generic

text: 2 hour KCl depolarized

text: sonication+Mnase digestion

text: Mus musculus

text: cultured cortical neurons E16+7DIV


characteristic: External Id

text: live

text: Generic

text: 2 hour KCl depolarized

text: sonication+Mnase digestion

text: Custom Anti-MeCP2 c-terminal antibody

text: Mus musculus

text: cultured cortical neurons E16+7DIV


characteristic: INSDC center name

text: live

text: Generic

text: Unstimulated

text: sonication

text: Custom Anti-MeCP2 c-terminal antibody

text: Mus musculus

text: cultured cortical neurons E16+7DIV


characteristic: INSDC first public

text: live

text: Generic

text: Unstimulated

text: sonication

text: Mus musculus

text: cultured cortical neurons E16+7DIV


characteristic: INSDC secondary accession

text: live

text: Generic

text: 2 hour KCl depolarized

text: sonication

text: Mus musculus

text: cultured cortical neurons E16+7DIV


text: live

characteristic: INSDC status

text: Generic

text: 2 hour KCl depolarized

text: sonication

text: Custom Anti-MeCP2 c-terminal antibody

text: Mus musculus

text: cultured cortical neurons E16+7DIV


text: live

text: Generic

characteristic: NCBI submission model

text: 2 hour KCl depolarized

text: sonication

text: Custom Anti-pS421 MeCP2 antibody

text: Mus musculus

text: cultured cortical neurons E16+7DIV


text: Pike Lab, Biochemistry, University of Wisconsin at Madison

text: live

text: Generic

characteristic: NCBI submission package

text: VDR

characteristic: antibody

text: LS180 cells

characteristic: cell line

text: Homo sapiens

characteristic: passages

text: cultured CRC cells

text: vehicle control

characteristic: treatment


text: live

text: Generic

characteristic: SRA accession

text: VDR

text: LS180 cells

text: Homo sapiens

characteristic: organism

text: cultured CRC cells

characteristic: title


text: Pike, Biochemistry, University of Wisconsin at Madison

text: live

text: Generic

text: RXR

text: LS180 cells

text: Homo sapiens

text: cultured CRC cells

text: vehicle control


text: live

text: Generic

text: RXR

text: LS180 cells

text: Homo sapiens

text: cultured CRC cells


text: live

text: Generic

text: bCat

text: LS180 cells

text: Homo sapiens

text: cultured CRC cells

text: vehicle control


text: live

text: Generic

text: bCat

text: LS180 cells

text: Homo sapiens

text: cultured CRC cells


text: live

text: Generic

text: LS180 cells

text: Homo sapiens

text: cultured CRC cells

text: vehicle control


text: live

text: Generic

text: LS180 cells

text: Homo sapiens

text: cultured CRC cells


text: live

text: Generic

text: CEBPb

text: LS180 cells

text: Homo sapiens

text: cultured CRC cells

text: vehicle control


text: live

text: Generic

text: CEBPb

text: LS180 cells

text: Homo sapiens

text: cultured CRC cells


text: live

text: Generic

text: LS180 cells

text: Homo sapiens

text: cultured CRC cells

text: input sample


MA line 12

text: The Salk Institute for Biological Studies

text: live

text: Generic

text: Identification of spontaneously occurring epigenetic variation of DNA methylation and small RNAs in a population of Arabidopsis that has been grown for 30 generations of single-seed descent growth.

characteristic: description

text: Arabidopsis thaliana

text: 30 Generation Epigenome Sequencing


MA line 19

text: live

text: Generic

text: Arabidopsis thaliana

text: Dynamic epigenomic oscillations in differentiated cells


MA line 29

text: live

text: Generic

text: Arabidopsis thaliana

text: 30 Generation Epigenome Sequencing


MA line 49

text: live

text: Generic

text: Arabidopsis thaliana

text: 30 Generation Epigenome Sequencing


MA line 59

text: live

text: Generic

text: Arabidopsis thaliana

text: 30 Generation Epigenome Sequencing


MA line 69

text: live

text: Generic

text: Arabidopsis thaliana

text: 30 Generation Epigenome Sequencing


MA line 119

text: live

text: Generic

text: Arabidopsis thaliana

text: 30 Generation Epigenome Sequencing


text: University of Rochester

text: live

text: Generic

text: sedentary

characteristic: activity level

text: normal

characteristic: myostatin genotype

text: Mus musculus

text: triceps brachii muscle

text: triceps brachii

characteristic: tissue


characteristic: External Id

text: University of Rochester

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

text: sedentary

text: Mstn exon 3 floxed

text: Mus musculus

text: triceps brachii muscle

text: triceps brachii


text: University of Rochester

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: active

text: normal

text: Mus musculus

text: triceps brachii muscle

text: triceps brachii


text: University of Rochester

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: active

text: Mstn exon 3 floxed

text: Mus musculus

text: triceps brachii muscle

text: triceps brachii


text: Ronald Evans, Gene Expression Lab, Salk Institute

text: live

text: Generic

text: primary bone marrow-derived macrophages

characteristic: cell type

text: Glucocorticoid Receptor

characteristic: chip antibody

text: Mus musculus

text: GR-ChIP_1uM Dex

characteristic: strain

text: GR-ChIP + 1uM Dex

text: Dexamethasone treated, unstimulated


text: live

text: Generic

characteristic: SRA accession

text: primary bone marrow-derived macrophages

text: Glucocorticoid Receptor

text: Mus musculus

characteristic: organism

text: GR-ChIP_1uM Dex_LPS

text: GR-ChIP + 1uM Dex + LPS

text: Dexamethasone treated, LPS-stimulated

characteristic: treatment


text: live

text: Generic

text: primary bone marrow-derived macrophages

text: Mus musculus

text: NF-kB/p65-ChIP_1uM Dex_LPS

text: NF-kB/p65-ChIP + 1uM Dex +LPS

characteristic: title

text: Dexamethasone treated, LPS-stimulated


text: live

text: Generic

text: primary bone marrow-derived macrophages

text: cJun

text: Mus musculus

text: cJun-ChIP + LPS

text: LPS-stimulated


text: live

text: Generic

text: primary bone marrow-derived macrophages

text: cJun

text: Mus musculus

text: cJun-ChIP_1uM Dex_LPS

text: cJun-ChIP + 1uM Dex + LPS

text: Dexamethasone treated, LPS-stimulated


text: Department of Biotechnology, College of Food Science and Nutritional Engineering, China Agricultural University

text: live

text: Generic

text: mycelia

characteristic: development stage

text: Rhizomucor miehei

text: mycelia


GSY2694 Xylose Plus Pool

text: Stanford University School of Medicine

text: live

text: Generic

text: 21 segregants of GSY2694 that grow in xylose

characteristic: description

text: Saccharomyces uvarum

text: Xylose Positive Pool -- GSY2694


characteristic: External Id

text: State Key lab of Hybrid Rice, College of Life Sciences, Wuhan University

text: live

text: Generic

characteristic: cultivar

text: control

characteristic: disease stage

text: uninfected

characteristic: infection

text: Oryza sativa Indica Group

text: Spike control

text: Oryza sativa indica

text: spike

characteristic: tissue

text: Spike control


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: stage 1

text: Ustilaginoidea virens

text: Oryza sativa Indica Group

text: Spike infected stage 1

text: Oryza sativa indica

text: spike

text: Spike infected stage 1


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: stage 2

text: Ustilaginoidea virens

text: Oryza sativa Indica Group

text: Spike infected stage 2

text: Oryza sativa indica

characteristic: strain

text: spike

text: Spike infected stage 2


text: live

text: Generic

characteristic: SRA accession

text: stage 3

text: Ustilaginoidea virens

text: Oryza sativa Indica Group

characteristic: organism

text: Spike infected stage 3

text: Oryza sativa indica

text: spike

text: Spike infected stage 3


text: Stanford University

text: live

text: Generic

text: PBMC

characteristic: cell type

text: UNK whole genome sequencing data from blood by Illumina

text: UNK

characteristic: individual id

text: Homo sapiens

text: blood

characteristic: tissue type

text: UNK WGS from blood

characteristic: title


characteristic: External Id

text: Clark Laboratory, Department of Biology, University of Utah

text: live

text: Generic

text: males and females

characteristic: gender

text: bean

characteristic: host

text: Tetranychus urticae

text: biological rep 1; technical reps 1 and 2

characteristic: replicate

text: mites grown on bean

text: London

text: whole body

text: Bean feeding, biological replicate 1


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: males and females

text: bean

text: Tetranychus urticae

text: biological rep 2; technical reps 1 and 2

text: mites grown on bean

text: London

text: whole body

characteristic: tissue

text: Bean feeding, biological replicate 2


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: males and females

text: bean

text: Tetranychus urticae

text: biological rep 3; technical reps 1 and 2

text: mites grown on bean

text: London

text: whole body

text: Bean feeding, biological replicate 3


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: males and females

text: A. thaliana Bla-2

text: Tetranychus urticae

text: mites grown on A. thaliana Bla2

text: London

characteristic: strain

text: whole body

text: Arabidopsis (bla2 accession) feeding, biological replicate 1


text: live

text: Generic

characteristic: SRA accession

text: males and females

text: A. thaliana Bla-2

text: Tetranychus urticae

characteristic: organism

text: mites grown on A. thaliana Bla2

text: London

text: whole body

text: Arabidopsis (bla2 accession) feeding, biological replicate 2


text: live

text: Generic

text: males and females

text: A. thaliana Bla-2

text: Tetranychus urticae

text: mites grown on A. thaliana Bla2

text: London

text: whole body

text: Arabidopsis (bla2 accession) feeding, biological replicate 3


text: live

text: Generic

text: males and females

text: tomato

text: Tetranychus urticae

text: mites grown on tomato

text: London

text: whole body

text: Tomato feeding, biological replicate 1


text: live

text: Generic

text: males and females

text: tomato

text: Tetranychus urticae

text: mites grown on tomato

text: London

text: whole body

text: Tomato feeding, biological replicate 2


text: live

text: Generic

text: males and females

text: tomato

text: Tetranychus urticae

text: mites grown on tomato

text: London

text: whole body

text: Tomato feeding, biological replicate 3


text: Stanford University

text: live

text: Generic

text: Buccal

characteristic: cell type

text: UNK whole genome sequencing data from saliva by Illumina

characteristic: description

text: UNK

characteristic: individual id

text: saliva

characteristic: material

text: Homo sapiens

text: whole genome sequencing UNK saliva


characteristic: External Id

text: live

text: Generic

text: adult

characteristic: developmental stage

text: males and females

characteristic: gender

text: Tetranychus urticae

text: adult

text: London

text: whole body

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: embryo

text: males and females

text: Tetranychus urticae

text: embryo

text: London

text: whole body

characteristic: tissue


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: larvae and nymph

text: males and females

text: Tetranychus urticae

text: larvae/nymph

text: London

text: whole body


text: University of California - Davis, Drosophila Population Genomics Project

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Sub-Saharan African population - Zambia (Siavonga). 5 generations of sib-sib inbreeding; haploid embryo.

text: Drosophila melanogaster


text: live

text: Generic

characteristic: SRA accession

text: Sub-Saharan African population - Zambia (Siavonga). Haploid embryo.

text: Drosophila melanogaster

characteristic: organism


silver carp

text: Institute of Hydrobiology

text: live

text: Generic

text: The silver carp (Hypophthalmichthys molitrix) is among the most intensively pond-cultured species and is used wildly in counteracting water bloom in China. But little genomic information is available for this species about its rapid growth in the water even with high concentration of poisonous microcystin.

characteristic: description

text: Hypophthalmichthys molitrix

text: Transcriptome Analysis of Silver Carp (Hypophthalmichthys molitrix) by Paired-End RNA Sequencing


text: UT Austin

text: live

text: Generic

text: JEB807: Kibota-Lynch Mutation Accumulation Experiment, Line #1, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

characteristic: strain

text: JEB807: Kibota-Lynch Mutation Accumulation, Line #1, 550 days


text: UT Austin

text: live

text: Generic

text: JEB808: Kibota-Lynch Mutation Accumulation Experiment, Line #2, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB808: Kibota-Lynch Mutation Accumulation, Line #2, 550 days


text: UT Austin

text: live

text: Generic

text: JEB809: Kibota-Lynch Mutation Accumulation Experiment, Line #3, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB809: Kibota-Lynch Mutation Accumulation, Line #3, 550 days


text: UT Austin

text: live

text: Generic

text: JEB810: Kibota-Lynch Mutation Accumulation Experiment, Line #1, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB810: Kibota-Lynch Mutation Accumulation, Line #1, 550 days


text: UT Austin

text: live

text: Generic

text: JEB811: Kibota-Lynch Mutation Accumulation Experiment, Line #5, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB811: Kibota-Lynch Mutation Accumulation, Line #5, 550 days


text: UT Austin

text: live

text: Generic

text: JEB812: Kibota-Lynch Mutation Accumulation Experiment, Line #6, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB812: Kibota-Lynch Mutation Accumulation, Line #6, 550 days


text: UT Austin

text: live

text: Generic

text: JEB813: Kibota-Lynch Mutation Accumulation, Line #7, 550 days

text: Escherichia coli B str. REL606


text: UT Austin

text: live

text: Generic

text: JEB814: Kibota-Lynch Mutation Accumulation Experiment, Line #8, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB814: Kibota-Lynch Mutation Accumulation, Line #8, 550 days


text: UT Austin

text: live

text: Generic

text: JEB815: Kibota-Lynch Mutation Accumulation, Line #9, 550 days

text: Escherichia coli B str. REL606


text: UT Austin

text: live

text: Generic

text: JEB816: Kibota-Lynch Mutation Accumulation Experiment, Line #10, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB816: Kibota-Lynch Mutation Accumulation, Line #10, 550 days


text: UT Austin

text: live

text: Generic

text: JEB817: Kibota-Lynch Mutation Accumulation Experiment, Line #11, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB817: Kibota-Lynch Mutation Accumulation, Line #11, 550 days


text: UT Austin

text: live

text: Generic

text: JEB818: Kibota-Lynch Mutation Accumulation Experiment, Line #12, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB818: Kibota-Lynch Mutation Accumulation, Line #12, 550 days


text: UT Austin

text: live

text: Generic

text: JEB819: Kibota-Lynch Mutation Accumulation Experiment, Line #13, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB819: Kibota-Lynch Mutation Accumulation, Line #13, 550 days


text: UT Austin

text: live

text: Generic

text: JEB820: Kibota-Lynch Mutation Accumulation Experiment, Line #14, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB820: Kibota-Lynch Mutation Accumulation, Line #14, 550 days


text: UT Austin

text: live

text: Generic

text: JEB821: Kibota-Lynch Mutation Accumulation Experiment, Line #15, E. coli isolate from 550 days

text: Escherichia coli B str. REL606

text: JEB821: Kibota-Lynch Mutation Accumulation, Line #15, 550 days


text: UT Austin

text: live

text: Generic

text: JEB857: mutL Mutation Accumulation, Line #1, E. coli isolate from 400 days

text: Escherichia coli B str. REL606

text: JEB857: mutL Mutation Accumulation, Line #1, 400 days


text: UT Austin

text: live

text: Generic

text: JEB858: mutL Mutation Accumulation, Line #2, E. coli isolate from 400 days

text: Escherichia coli B str. REL606

text: JEB858: mutL Mutation Accumulation, Line #2, 400 days


text: UT Austin

text: live

text: Generic

text: JEB859: mutL Mutation Accumulation, Line #3, E. coli isolate from 400 days

text: Escherichia coli B str. REL606

text: JEB859: mutL Mutation Accumulation, Line #3, 400 days


text: UT Austin

text: live

text: Generic

text: JEB907: mutL Mutation Accumulation, Line A, E. coli isolate from 100 days

text: Escherichia coli B str. REL606

text: JEB907: mutL Mutation Accumulation, Line A, 100 days


text: UT Austin

text: live

text: Generic

text: JEB908: mutL Mutation Accumulation, Line B, E. coli isolate from 100 days

text: Escherichia coli B str. REL606

text: JEB908: mutL Mutation Accumulation, Line B, 100 days


text: UT Austin

text: live

text: Generic

text: JEB909: mutL Mutation Accumulation, Line C, E. coli isolate from 100 days

text: Escherichia coli B str. REL606

text: JEB909: mutL Mutation Accumulation, Line C, 100 days


text: UT Austin

text: live

text: Generic

text: JEB958: mutY Mutation Accumulation, Line #1, E. coli isolate from 100 days

text: Escherichia coli B str. REL606

text: JEB958: mutY Mutation Accumulation, Line #1, 100 days


text: UT Austin

text: live

text: Generic

text: JEB959: mutY Mutation Accumulation, Line #2, E. coli isolate from 100 days

text: Escherichia coli B str. REL606

text: JEB959: mutY Mutation Accumulation, Line #2, 100 days


text: UT Austin

text: live

text: Generic

text: JEB960: mutY Mutation Accumulation, Line #3, E. coli isolate from 100 days

text: Escherichia coli B str. REL606

text: JEB960: mutY Mutation Accumulation, Line #3, 100 days


R. ferrugineus cDNA

text: Beijing Institute of Genomics

text: live

text: Generic

text: The red palm weevils at different development stages (concluding larva, pupa and adult) were collected from the infested date palm trees (25*43'60N, 49*62'48E) in Hofuf, Saudi Arabia. To get egg samples, adult weevils were obtained from collected cocoons and reared as described in previous studies. To avoid possible contamination of the gut flora, abdomen of the larva, pupa and adult samples were not used. To enrich the pool of expressed genes with various classes of transcripts, all the major stages of the red palm weevil development were included: eggs at 1st, 2nd, 3rd and 4th day after oviposition (E1, E2, E3 and E4), respectively; younger larva (YL) and elder larva (LO); pupa before metamorphosis (P1), pupa during metamorphosis (P2) and pupa after metamorphosis (P3); female adult (AF) and male adult (AM). We constructed one cDNA library with each of above samples using SMART method. So, we prepared 11 cDNA libraries using SMART method. In addition, we pooled the mRNA of above 11 samples and constructed 1 random-primer cDNA library (RP) using 454 Rapid cDNA library kits. Totally, 12 libraries were constructed and sequenced with the 454 GS FLX Titanium

text: Rhynchophorus ferrugineus

text: R. ferrugineus cDNA


HCHmetagenome

text: Medical Biofilm Research Institute

text: live

text: Generic

text: Dowd SE , Lal R HCH dumpsite metagenome runs

text: Bacteria

text: Comparative Metagenomic Analysis to Understand Taxonomic and Functional Fingerprints of HCH (Hexachlorocyclohexane) Degrading Soil Microbial Communities across HCH Gradient.


FePlus

text: IFM-GEOMAR

text: live

text: Generic

text: Thalassiosira oceanica CCMP1005

text: T. oceanica cells, iron replete, exponential growth


FeMinus

text: IFM-GEOMAR

text: live

text: Generic

text: Thalassiosira oceanica CCMP1005

text: T. oceanica cells, iron deplete, exponential growth


gDNA

text: IFM-GEOMAR

text: live

text: Generic

text: Thalassiosira oceanica CCMP1005

text: total genomic DNA


text: IFM-GEOMAR

text: live

text: Generic

text: Thalassiosira oceanica CCMP1005

text: nuclear genomic DNA of nutrient replete, exponentially growing T. oceanica cells


text: University of Birmingham

text: live

text: Generic

text: Multi-drug resistance isolate from Croatia

text: Acinetobacter baumannii

text: Acinetobacter baumannii


name: University of Illinois at Urbana-Champaign : Cbei8052RNA-Seq

text: live

text: Generic

text: Clostridium beijerinckii NCIMB 8052

text: NCIMB 8052

text: 2h sample for Transcriptome structure of Clostridium beijerinckii NCIMB 8052


text: University of Illinois at Urbana-Champaign

text: live

text: Generic

text: Clostridium beijerinckii NCIMB 8052

text: NCIMB 8052

text: 4.5h sample for Transcriptome structure of Clostridium beijerinckii NCIMB 8052


Wang. Cbei8052RNA-Seq-3

text: live

text: Generic

text: Clostridium beijerinckii NCIMB 8052

text: NCIMB 8052

text: 10h sample for Transcriptome structure of Clostridium beijerinckii NCIMB 8052


Wang. Cbei8052RNA-Seq-4

text: live

text: Generic

text: Clostridium beijerinckii NCIMB 8052

text: NCIMB 8052

text: 14h sample for Transcriptome structure of Clostridium beijerinckii NCIMB 8052


Wang. Cbei8052RNA-Seq-5

text: live

text: Generic

text: Clostridium beijerinckii NCIMB 8052

text: NCIMB 8052

text: 17h sample for Transcriptome structure of Clostridium beijerinckii NCIMB 8052


Wang. Cbei8052RNA-Seq-6

text: live

text: Generic

text: Clostridium beijerinckii NCIMB 8052

text: NCIMB 8052

text: 26.5h sample for Transcriptome structure of Clostridium beijerinckii NCIMB 8052


Flow sorted wheat chromosome 3A arms

text: Kansas State University

text: live

text: Generic

text: The 3AL and 3AS ditelosomic lines in the genetic background of wheat cultivar 'Chinese Spring' were used for isolation arm-specific genomic DNA by flow-sorting (Kubal*kov* et al. 2002; Dolezel et al., 2007). Due to the limited amount of material generated using the flow-sorting approach, the genomic DNA was amplified using GenomePlex WGA Kit (Sigma). The amplified genomic DNA was used for constructing the two types of libraries for 454 sequencing using the standard Roche protocols: the 500 bp library for single read and 3 kb library for paired-end read sequencing.

text: Triticum aestivum

text: Flow sorted wheat chromosome 3A arms


name: Flow sorted wheat chromosome 3A long arm

text: Kansas State University

text: live

text: Generic

text: The 3AL ditelosomic lines in the genetic background of wheat cultivar 'Chinese Spring' were used for isolation arm-specific genomic DNA by flow-sorting (Kubal*kov* et al. 2002; Dolezel et al., 2007). Due to the limited amount of material generated using the flow-sorting approach, the genomic DNA was amplified using GenomePlex WGA Kit (Sigma). The amplified genomic DNA was used for constructing the two types of libraries for 454 sequencing using the standard Roche protocols: the 500 bp library for single read and 3 kb library for paired-end read sequencing.

text: Triticum aestivum


name: Flow sorted wheat chromosome 3A short arm

text: Kansas State University

text: live

text: Generic

text: The 3AS ditelosomic lines in the genetic background of wheat cultivar 'Chinese Spring' were used for isolation arm-specific genomic DNA by flow-sorting (Kubal*kov* et al. 2002; Dolezel et al., 2007). Due to the limited amount of material generated using the flow-sorting approach, the genomic DNA was amplified using GenomePlex WGA Kit (Sigma). The amplified genomic DNA was used for constructing the two types of libraries for 454 sequencing using the standard Roche protocols: the 500 bp library for single read and 3 kb library for paired-end read sequencing.

text: Triticum aestivum


text: dbGaP

text: live

text: Generic

text: high molecular weight genomic DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: peripheral blood granulocytes

characteristic: body site

text: DS-CA-PUB-MDS

text: not applicable (if normal DNA)

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Tumor vs. Matched-Normal

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor high molecular weight genomic DNA sample from peripheral blood granulocytes of a human female participant in the dbGaP study Genome-Wide Analysis of Chronic Lymphocytic Leukemia


characteristic: External Id

text: Kagawa University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Citrus jambhiri

text: leaf

characteristic: tissue-type

text: cDNA library from rough lemon leaves

characteristic: title


text: Genoscope - Centre National de Sequencage

text: live

text: Generic

characteristic: dev-stage

text: Pemphigus spyrothecae

characteristic: organism

text: whole body

text: Pemphigus spyrothecae whole body parthenogenetic females, adults and larvae of various stages


text: live

text: Generic

text: Rhopalosiphum padi

text: whole body

text: Rhopalosiphum padi whole body parthenogenetic females, adults and larvae of various stages


text: Instituto de Investigacion en Recursos Cinegeticos IREC (CSIC-UCLM-JCCM)

text: live

text: Generic

text: Total RNA was isolated from nine R. annulatus engorged females infected with B. bigemina and nine engorged non-infected ticks. RNA quality was checked by gel electrophoreses to confirm the integrity of RNA preparations. Two pools corresponding to the infected and non-infected tick populations were made. Poly A+ RNA was isolated using the FastTrack 2.0 mRNA Isolation Kit (Invitrogen life Technologies, Carlsbad, CA, USA). The cDNA was synthesized and the SSH library was constructed using the PCR-Select cDNA subtraction Kit (Clontech-Takara, Mountain View, CA, USA). Briefly, double stranded cDNA from both groups (infected and non-infected ticks) was Rsa I digested. Part of the digested cDNA was ligated with Adapter 1 and part with the Adapter 2R; the rest of cDNA was saved to be used as a driver in hybridization. The forward subtracted library was made by hybridizing adapter ligated cDNA from B. bigemina infected ticks as the tester in the presence of uninfected tick cDNA as the driver. This reaction was designed to produce clones that are upregulated in infected ticks. Differentially expressed cDNAs were PCR amplified with Advantage PCR polymerase mix, cloned using pGEM Easy T/A cloning system (Promega, Madison, WI, USA), transformed into One Shot¨ TOP10 cells (Promega) and plated on LB/agar with ampicillin, X-gal and IPTG. Transformed cells were grown, the number of recombinant colonies was estimated and the presence of the inserts was confirmed by PCR using the universal T3 and T7 primers. The colonies having the confirmed inserts were then inoculated into LB/ampicilin and grown overnight for plasmid DNA purification.

characteristic: description

text: Engorged adult female ticks

text: Rhipicephalus annulatus

text: female

characteristic: sex

text: Kimron Veterinary Institute, Israel colony

characteristic: strain

text: whole flies

text: SSH cDNA library from uninfected and Babesia bigemina-infected Rhipicephalus (Boophilus) annulatus

text: pGEM Easy T/A

characteristic: vector


text: Science for Life laboratory

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: SOLiD miRNA reads from E15 mouse brain


characteristic: External Id

text: Science for Life laboratory

text: live

text: Generic

text: Mus musculus

text: SOLiD miRNA reads from P2 mouse brain


text: Science for Life laboratory

characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: SOLiD miRNA reads from P21 mouse brain


E15 mouse

text: Science for Life laboratory

characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus

text: miRNA reads from E15 mouse brain from SOLiD platfrom


P2 mouse

text: Science for Life laboratory

characteristic: INSDC last update

text: live

text: Generic

text: Mus musculus

text: miRNA reads from P2 mouse brain from SOLiD platfrom


P21 mouse

text: Science for Life laboratory

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: miRNA reads from P21 mouse brain from SOLiD platfrom


text: Smith Lab, Molecular and Computational Biology, University of Southern California

text: live

text: Generic

characteristic: NCBI submission model

text: mature lymphocyte

characteristic: developmental stage

text: Homo sapiens

text: B cell


text: live

text: Generic

characteristic: NCBI submission package

text: progenitor

text: Homo sapiens

text: HSPC


text: live

text: Generic

text: mature granulocyte

text: Homo sapiens

text: Neutrohphil

characteristic: title


text: live

text: Generic

text: progenitor (umbilical cord blood)

text: Homo sapiens


text: Broad Institute

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: CRE multi-hit

characteristic: reporter

text: embyonic kidney cell line

characteristic: sample type

text: HEK293 cells

text: CRE Multi 0uM Rep1 mRNA

text: DMSO (5 hours)

characteristic: treatment


text: Broad Institute

text: live

text: Generic

text: Escherichia coli

characteristic: organism

text: CRE multi-hit

text: plasmid pool

text: Plasmid pool

text: CRE Multi 0uM Rep1 Plasmid


text: Broad Institute

text: live

text: Generic

text: Homo sapiens

text: CRE multi-hit

text: embyonic kidney cell line

text: HEK293 cells

text: CRE Multi 0uM Rep2 mRNA

text: DMSO (5 hours)


text: Broad Institute

text: live

text: Generic

text: Escherichia coli

text: CRE multi-hit

text: plasmid pool

text: Plasmid pool

text: CRE Multi 0uM Rep2 Plasmid


text: Broad Institute

text: live

text: Generic

text: Homo sapiens

text: CRE multi-hit

text: embyonic kidney cell line

text: HEK293 cells

text: CRE Multi 100uM Rep1 mRNA

text: 100 uM forskolin (5 hours)


text: Broad Institute

text: live

text: Generic

text: Escherichia coli

text: CRE multi-hit

text: plasmid pool

text: Plasmid pool

text: CRE Multi 100uM Rep1 Plasmid


text: Broad Institute

text: live

text: Generic

text: Homo sapiens

text: CRE multi-hit

text: embyonic kidney cell line

text: HEK293 cells

text: CRE Multi 100uM Rep2 mRNA

text: 100 uM forskolin (5 hours)


text: Broad Institute

text: live

text: Generic

text: Escherichia coli

text: CRE multi-hit

text: plasmid pool

text: Plasmid pool

text: CRE Multi 100uM Rep2 Plasmid


text: Broad Institute

text: live

text: Generic

text: Homo sapiens

text: CRE single-hit

text: embyonic kidney cell line

text: HEK293 cells

text: CRE Single 100uM Rep1 mRNA

text: 100 uM forskolin (5 hours)


text: Broad Institute

text: live

text: Generic

text: Escherichia coli

text: CRE single-hit

text: plasmid pool

text: Plasmid pool

text: CRE Single 100uM Rep1 Plasmid


text: Broad Institute

text: live

text: Generic

text: Homo sapiens

text: CRE single-hit

text: embyonic kidney cell line

text: HEK293 cells

text: CRE Single 100uM Rep2 mRNA

text: 100 uM forskolin (5 hours)


text: Broad Institute

text: live

text: Generic

text: Escherichia coli

text: CRE single-hit

text: plasmid pool

text: Plasmid pool

text: CRE Single 100uM Rep2 Plasmid


text: Broad Institute

text: live

text: Generic

text: Homo sapiens

text: IFNB multi-hit

text: embyonic kidney cell line

text: HEK293 cells

text: IFNB Multi SeV0 Rep1 mRNA

text: Mock virus infection


text: Broad Institute

text: live

text: Generic

text: Escherichia coli

text: IFNB multi-hit

text: plasmid pool

text: Plasmid pool

text: IFNB Multi SeV0 Rep1 Plasmid


text: Broad Institute

text: live

text: Generic

text: Homo sapiens

text: IFNB multi-hit

text: embyonic kidney cell line

text: HEK293 cells

text: IFNB Multi SeV10 Rep1 mRNA

text: Sendai virus (MOI = 10, 16 hours)


text: Broad Institute

text: live

text: Generic

text: Escherichia coli

text: IFNB multi-hit

text: plasmid pool

text: Plasmid pool

text: IFNB Multi SeV10 Rep1 Plasmid


text: Broad Institute

text: live

text: Generic

text: Homo sapiens

text: IFNB single-hit

text: embyonic kidney cell line

text: HEK293 cells

text: IFNB Single SeV10 Rep1 mRNA

text: Sendai virus (MOI = 10, 16 hours)


text: Broad Institute

text: live

text: Generic

text: Escherichia coli

text: IFNB single-hit

text: plasmid pool

text: Plasmid pool

text: IFNB Single SeV10 Rep1 Plasmid


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Pseudomonas aeruginosa UCSF15-17

characteristic: description

text: Pseudomonas aeruginosa UCSF15-17

characteristic: strain

text: Generic sample from Pseudomonas aeruginosa UCSF15-17


text: Smith, Molecular Medicine, Cleveland Clinic Lerner College of Medicine of Case Western Reserve University

text: live

text: Generic

text: Homo sapiens

text: Right Atrial Tissue

text: Right Atrial Heart

characteristic: tissue


characteristic: External Id

text: live

text: Generic

text: Homo sapiens

text: Left Atrial Tissue

text: Left Atrial Heart


text: Agriculture and Agri-Food Canada

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Linum usitatissimum

text: CDC Bethune, CN18974, Canada, linseed


text: Agriculture and Agri-Food Canada

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Linum usitatissimum

text: Bison, CN33399, USA, linseed


text: Agriculture and Agri-Food Canada

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Linum usitatissimum

text: Atalante, CN18989, France, linseed


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum usitatissimum

text: Nike, CN 18991, Poland, fibre

characteristic: title


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum usitatissimum

text: Viking, CN 101111, France, fibre


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum usitatissimum

text: no name, CN100837, Turkey, dehiscent


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum usitatissimum

text: no name, CN97605, Russia, dehiscent


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum usitatissimum

text: Abertico E978, CN97769, Portugal, dehiscent


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum usitatissimum

text: no name, CN96848, Turkey, winter


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum usitatissimum

text: no name, CN98509, Israel, winter


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum usitatissimum

text: Beladi Y 6903, CN97009, Egypt, winter


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum bienne

text: Turkey1, CN 113606, Turkey, wild


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum bienne

text: Turkey2, CN 113628, Turkey, wild


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum bienne

text: Turkey3, CN 113638, Turkey, wild


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum bienne

text: Rhodes airport, TMP19716, Greece, wild


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum bienne

text: Evia25, TMP19719, Greece, wild


text: Human Cancer Genetics, 814, Biomedical Research Tower, Molecular Virology, Immunology & Medical Genetics, The Ohio State University

text: live

text: Generic

text: primary tissues

characteristic: cell type

text: MBD protein

characteristic: chromatin selection

text: Breast cancer cohort

characteristic: disease status

text: Homo sapiens

text: Human breast cells

text: Human breast cells


text: live

text: Generic

text: Desulfosporosinus meridiei DSM 13257

text: Desulfosporosinus meridiei DSM 13257

characteristic: organism

text: DSM 13257

text: Generic sample from Desulfosporosinus meridiei DSM 13257


text: live

text: Generic

text: Desulfotomaculum gibsoniae DSM 7213

characteristic: description

text: Desulfoscipio gibsoniae DSM 7213

text: DSM 7213

text: Generic sample from Desulfotomaculum gibsoniae DSM 7213

text: type strain of Desulfotomaculum gibsoniae

characteristic: type material


text: live

text: Generic

text: Desulfurococcus fermentans DSM 16532

text: Desulfurococcus amylolyticus DSM 16532

text: DSM 16532

characteristic: strain

text: Generic sample from Desulfurococcus fermentans DSM 16532


characteristic: External Id

text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: Linum usitatissimum

text: Linum default for a study Developing genomic resources in a non-model genus Linum via 454 pyrosequencing and genomic reduction.


PRJNA72437.P. vinckei vinckei

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Plasmodium vinckei vinckei

text: P. vinckei vinckei

characteristic: sample name

text: vinckei

text: Generic sample from Plasmodium vinckei vinckei


PRJNA72437.Plasmodium yoelii PyYM

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Plasmodium yoelii YM

text: Plasmodium yoelii PyYM

text: YM

text: Generic sample from Plasmodium yoelii YM


PRJNA72437.Plasmodium yoelii PyX

text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Plasmodium yoelii 17

text: Plasmodium yoelii PyX

text: Generic sample from Plasmodium yoelii 17


PRJNA72437.P. vinckei petteri CR

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Plasmodium vinckei petteri

text: P. vinckei petteri CR

text: CR

text: Generic sample from Plasmodium vinckei petteri


text: Anthony James, Molecular Biology and Biochemistry, University of California, Irvine

text: live

text: Generic

characteristic: NCBI submission package

text: blood-fed

characteristic: feeding

text: Aedes aegypti

text: Chetumal, blood-fed

text: Chetumal

text: whole body

characteristic: tissue

text: CTM-B-replicate A

characteristic: title


text: live

text: Generic

text: blood-fed

text: Aedes aegypti

characteristic: organism

text: Chetumal, blood-fed

text: Chetumal

text: whole body

text: CTM-B-replicate B


text: live

text: Generic

text: sugar fed

text: Aedes aegypti

text: Chetumal, sugar fed

text: Chetumal

text: whole body

text: CTM-S-replicate A


text: live

text: Generic

text: sugar fed

text: Aedes aegypti

text: Chetumal, sugar fed

text: Chetumal

text: whole body

text: CTM-S-replicate B


text: live

text: Generic

text: blood-fed

text: Aedes aegypti

text: Rex-D Puerto Rico, blood-fed

text: Rex-D Puerto Rico

text: whole body

text: Rex-D-B-replicate A


text: live

text: Generic

text: blood-fed

text: Aedes aegypti

text: Rex-D Puerto Rico, blood-fed

text: Rex-D Puerto Rico

text: whole body

text: Rex-D-B-replicate B


text: live

text: Generic

text: sugar fed

text: Aedes aegypti

text: Rex-D Puerto Rico, sugar fed

text: Rex-D Puerto Rico

text: whole body

text: Rex-D-S-replicate A


text: live

text: Generic

text: sugar fed

text: Aedes aegypti

text: Rex-D Puerto Rico, sugar fed

text: Rex-D Puerto Rico

text: whole body

text: Rex-D-S-replicate B


text: live

text: Generic

characteristic: culture-collection

text: Brenneria salicis ATCC 15712

characteristic: description

text: Brenneria salicis ATCC 15712 = DSM 30166

text: ATCC 15712

text: Generic sample from Brenneria salicis ATCC 15712

text: type strain of Brenneria salicis


text: Broad Institute

text: live

text: Generic

characteristic: bi gssr sample id

text: broadinstitute.org:bsp.prod.sample:1TPGS

characteristic: bi gssr sample lsid

text: RNA

characteristic: bi gssr sample type

text: Spizellomyces punctatus DAOM BR117

characteristic: sample id

text: DAOM BR117

characteristic: strain

text: Spizellomyces punctatus DAOM_BR117 RNA sample 98164.0


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: broadinstitute.org:bsp.prod.sample:1TQE3

text: RNA

text: Allomyces macrogynus ATCC 38327

text: Other

characteristic: sex

text: Allomyces macrogynus ATCC_38327 RNA sample 98170.0


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: broadinstitute.org:bsp.prod.sample:1TQE2

text: RNA

text: Allomyces macrogynus ATCC 38327

text: Other

text: Allomyces macrogynus ATCC_38327 RNA sample 98169.0


text: Broad Institute

text: live

text: Generic

text: Thecamonas trahens ATCC 50062

characteristic: organism

characteristic: sample name

text: Generic sample from Thecamonas trahens ATCC 50062

characteristic: title


text: Broad Institute

text: live

text: Generic

text: Female

characteristic: host sex

text: Generic sample from Clostridiales bacterium ORNL_6EZ5-Gt_5_Pl1-54


text: Broad Institute

text: live

text: Generic

characteristic: bi gssr sample id

text: broadinstitute.org:bsp.prod.sample:1TQE1

characteristic: bi gssr sample lsid

text: RNA

characteristic: bi gssr sample type

text: Allomyces macrogynus ATCC 38327

text: Other

text: Allomyces macrogynus ATCC_38327 RNA sample 98168.0


PRJNA71873.Adherent cells (Stage 1)

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Capsaspora owczarzaki ATCC 30864

text: Adherent cells (Stage 1)

text: ATCC 30864

characteristic: strain

text: Generic sample from Capsaspora owczarzaki ATCC 30864


text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: broadinstitute.org:bsp.prod.sample:1TPGT

text: RNA

text: Podila verticillata NRRL 6337

characteristic: sample id

text: Other

text: NRRL 6337

text: Mortierella verticillata NRRL 6337 RNA sample 98165.0


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: Ministeria vibrans ATCC 50519

text: Generic sample from Ministeria vibrans ATCC 50519


PRJNA71873.Floating cells (Stage 2)

text: Broad Institute

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Capsaspora owczarzaki ATCC 30864

text: Floating cells (Stage 2)

text: ATCC 30864


text: Ryan Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Suppression subtractive hybridization library

characteristic: description

text: Adult

characteristic: dev-stage

text: Sus scrofa

text: Muscle

characteristic: tissue-type

text: Sus scrofa muscle SSH 2 reverse


text: Ryan Institute

text: live

text: Generic

text: Adult

text: Sus scrofa

characteristic: organism

text: Muscle

text: Sus scrofa muscle SSH 3 forward

characteristic: title


text: Ryan Institute

text: live

text: Generic

text: Adult

text: Sus scrofa

text: Muscle

text: Sus scrofa muscle SSH 4 reverse


text: Ryan Institute

text: live

text: Generic

text: Adult

text: Sus scrofa

text: Muscle

text: Sus scrofa muscle SSH 5 forward


text: Ryan Institute

text: live

text: Generic

text: Adult

text: Sus scrofa

text: Muscle

text: Sus scrofa muscle SSH 6 reverse


text: Ryan Institute

text: live

text: Generic

text: Adult

text: Sus scrofa

text: Muscle

text: Sus scrofa muscle SSH 7 forward


text: Ryan Institute

text: live

text: Generic

text: Adult

text: Sus scrofa

text: Muscle

text: Sus scrofa muscle SSH 8 reverse


text: Central Institute of Freshwater and Aquaculture

text: live

text: Generic

text: Labeo rohita

text: Labeo rohita gill cDNA


text: University of Calgary - Sun Center of Excellence for Visual Genomics

text: live

text: Generic

text: Euphorbia peplus


text: live

text: Generic

text: Grindelia integrifolia


text: live

text: Generic

text: Marrubium vulgare


text: live

text: Generic

text: Isodon rubescens


text: live

text: Generic

text: Pseudolarix amabilis


Control

text: University of Arizona

text: live

text: Generic

text: Untreated Ulmus minor leaves

text: Ulmus minor

text: Control


EF

text: University of Arizona

text: live

text: Generic

text: Leaves with elm leaf beetle eggs and feeding damage by female beetles.

text: Ulmus minor

text: Eggs&Feeding


F

text: University of Arizona

text: live

text: Generic

text: Leaves with feeding damage by female beetles.

text: Ulmus minor

text: Feeding


MeJA

text: University of Arizona

text: live

text: Generic

text: Leaves treated with 50 *mol MeJA.

text: Ulmus minor

text: Methyl jasmonate


E

text: University of Arizona

text: live

text: Generic

text: Leaves with artificial transfer of eggs to leaves that have been scratched prior to egg transfer.

text: Ulmus minor

text: Transferred eggs


EF F

text: University of Arizona

text: live

text: Generic

text: Elm leaf cDNA with two treatments: 1) Feeding of adult beetles 2) Egg deposition and feeding. Samples were not barcoded for subsequent separation but were sequenced in order to increase overall depth of coverage.

text: Ulmus minor

text: Combination of F EF samples


C JA E

text: University of Arizona

text: live

text: Generic

text: Elm leaf cDNA with three different treatments: 1) Untreated control 2) Methyl jasmonate 3) Leaves scratched and eggs transferred. Samples were not barcoded for subsequent separation but were sequenced in order to increase overall depth of coverage.

text: Ulmus minor

text: Combination of Control, MeJA, and E samples


MixAll

text: University of Arizona

text: live

text: Generic

text: Elm leaf samples with 5 treatments including 1) Untreated control 2) Methyl jasmonate treatment 3) Feeding of adult beetles 4) Egg deposition and feeding 5) Scratching and transfer of eggs. Samples were not barcoded for subsequent separation but were sequenced in order to increase overall depth of coverage.

text: Ulmus minor

text: Mix of all five samples


text: University of Washington Genome Sciences - Shendure Lab

text: live

text: Generic

text: Xenograft line established from patients with lethal prostate cancer. Samples are designated as LuCaP 23.1 through LuCaP 147 in the order in which they were initially established as xenografts in mice.

text: Homo sapiens

text: LuCaP35 xenograft line


ladybird

text: Sun Yet-sen University

text: live

text: Generic

text: Cryptolaemus montrouzieri

text: Ladybird Cryptolaemus montrouzieri transcriptome


text: Centre for Geogenetics, Natural History Museum of Denmark

text: live

text: Generic

text: CA1 was collected at Thistle Creek, Yukon, from a larger bone (TC21) associated with an infinite radiocarbone date (OxA-23933 &gt;50,300BP; and UBA-16493 and UBA-17013 &gt;50,505BP)

text: Equus caballus


text: live

text: Generic

text: CA2 was collected at Thistle Creek, Yukon, from a larger bone (TC21) associated with an infinite radiocarbone date (OxA-23933 &gt;50,300BP; and UBA-16493 and UBA-17013 &gt;50,505BP)

text: Equus caballus


text: Baylor College of Medicine

text: live

text: Generic

text: Eucidaris tribuloides genomic DNA from sperm from a single individual

characteristic: isolate

text: Eucidaris tribuloides

text: sperm

text: Generic sample from Eucidaris tribuloides


characteristic: External Id

text: Baylor College of Medicine

text: live

text: Generic

text: Patiria miniata (formerlly Asterina miniata) genomic DNA from sperm from a single individual

text: Patiria miniata

text: Generic sample from Patiria miniata


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Fervidobacterium pennivorans DSM 9078

text: Fervidobacterium pennivorans DSM 9078

text: DSM 9078

characteristic: strain

text: Generic sample from Fervidobacterium pennivorans DSM 9078


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC center name

text: live

text: Generic

text: Mycobacteroides abscessus 6G-0728-R

text: Mycobacterium abscessus 6G-0728-R


characteristic: INSDC secondary accession

text: live

text: Generic

text: Geobacter metallireducens RCH3

text: Geobacter metallireducens RCH3

text: Generic sample from Geobacter metallireducens RCH3


text: live

text: Generic

text: Halobacterium sp. DL1

text: Halobacterium sp. DL1

text: Generic sample from Halobacterium sp. DL1


text: live

text: Generic

text: Hyphomicrobium denitrificans 1NES1

text: Hyphomicrobium denitrificans 1NES1

text: Generic sample from Hyphomicrobium denitrificans 1NES1


text: live

text: Generic

text: Vibrio cholerae HC-61A2

text: Vibrio cholerae HC-61A2


text: University of Calgary - Sun Center of Excellence for Visual Genomics

text: live

text: Generic

text: Lactuca sativa


text: live

text: Generic

text: Arnica montana


text: live

text: Generic

text: Phyla dulcis


text: live

text: Generic

text: Valeriana officinalis


text: Naval Medical Research Center, Biological Defense Research Directorate

text: live

text: Generic

characteristic: NMRC sample ID

characteristic: culture-collection

text: Bacillus cereus ATCC 4342

text: ATCC 4342

text: Bacillus cereus strain ATCC 4342 NS2974


characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: Arnica chamissonis


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Glebionis coronaria


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Matricaria chamomilla var. recutita


text: live

text: Generic

text: Xanthium strumarium


text: live

text: Generic

text: Bacillus cereus m1293

text: Bacillus cereus strain m1293 NS2996


text: live

text: Generic

text: Artemisia chamaemelifolia


text: live

text: Generic

text: Ligularia fischeri


text: live

text: Generic

text: Petasites hybridus


text: live

text: Generic

text: Artemisia absinthium


text: live

text: Generic

text: Bacillus cereus m1550

text: Bacillus cereus strain m1550 NS2998


text: live

text: Generic

text: Bacillus thuringiensis serovar thuringiensis str. T01001

text: thuringiensis

characteristic: serovar

text: Bacillus thuringiensis strain T01001 NS3002


text: Genoscope - Centre National de Sequencage

text: live

text: Generic

text: Botrytis cinerea

text: Botryotinia fuckeliana pH3 or pH8 shift cDNA library


text: live

text: Generic

text: Botrytis cinerea

text: Botryotinia fuckeliana carbon sources cDNA library


text: live

text: Generic

text: Botrytis cinerea

text: Botryotinia fuckeliana Appressoria cDNA library


text: live

text: Generic

text: Botrytis cinerea

text: Botryotinia fuckeliana apothecia from cross SAS56 X SAS54 cDNA library


text: live

text: Generic

text: Bacillus thuringiensis serovar kurstaki str. T03a001

text: kurstaki

text: Bacillus thuringiensis strain T03a001 NS3004


text: University of Washington Genome Sciences - Shendure Lab

text: live

text: Generic

text: Xenograft line established from patients with lethal prostate cancer. Samples are designated as LuCaP 23.1 through LuCaP 147 in the order in which they were initially established as xenografts in mice.

characteristic: description

text: Homo sapiens

text: LuCaP23.1AI xenograft line


Chinese Sika deer

text: Center for New Medicine Research, Changchun University of Chinese

text: live

text: Generic

text: Cervus nippon

characteristic: organism

text: De novo characterization of the antler tip of Chinese Sika deer transcriptome and analysis of gene expression related to rapid growth


text: live

text: Generic

text: Homo sapiens

text: LuCaP105 xenograft line

characteristic: title


text: live

text: Generic

text: Homo sapiens

text: LuCaP115 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP136 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP141 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP147 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP78 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP81 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP92 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP93 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP35V xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP96 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP96AI xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP23.12 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP23.1 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP49 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP58 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP77 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP70 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP86.2 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP73 xenograft line


text: live

text: Generic

text: Homo sapiens

text: LuCaP145.2 xenograft line


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae GA40183

text: Streptococcus pneumoniae GA40183

type: AMR curated data - CABBAGE

value: penicillin

value: resistant

value: Streptococcus pneumoniae

value: cefotaxime

value: linezolid

value: susceptible

value: sparfloxacin

value: trimethoprim-sulfamethoxazole

value: vancomycin

value: tetracycline

value: clindamycin

value: rifampin

value: cefuroxime

value: amoxicillin

value: levofloxacin

value: meropenem

value: intermediate

value: ciprofloxacin

value: quinupristin-dalfopristin

value: chloramphenicol

value: erythromycin


characteristic: External Id

text: Agriculture and Agri-Food Canada

characteristic: INSDC center name

text: live

text: Generic

text: CN91147, China, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

characteristic: INSDC secondary accession

text: live

text: Generic

text: CN81387, India, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN59909, Iran, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN92006, Japan, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN58854, Mongolia, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN81307, Nepal, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN80536, Pakistan, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN29118, Kyrgyzstan, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN68637, Turkey, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN51205, Syria, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN50729, Jordan, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN29233, Iraq, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN77017, Ethiopia, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN58689, Egypt, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN68925, Greece, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: CN94239, Lebanon, landrace

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


Hordeum vulgare_default

text: Agriculture and Agri-Food Canada

text: live

text: Generic

text: ordeum vulgare default for Hordeum vulgare landrace diversity study

text: Hordeum vulgare

text: Generic sample from Hordeum vulgare


GGBSa

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: metagenome of an anaerobic microbial community decomposing poplar wood chips

text: bioreactor metagenome

text: CTACTacgggcggtgtgtRc

characteristic: primer

text: Generic sample from bioreactor metagenome


GGIUa

characteristic: INSDC first public

text: live

text: Generic

text: bioreactor metagenome

text: CTACTacgggcggtgtgtRc


GOFYa

text: live

text: Generic

characteristic: SRA accession

text: bioreactor metagenome

text: CGTACacgggcggtgtgtRc


characteristic: INSDC last update

text: live

text: USA

text: Generic

text: Streptococcus

text: Streptococcus pneumoniae EU-NP05

characteristic: strain

text: Streptococcus pneumoniae EU-NP05

value: penicillin

value: Streptococcus pneumoniae

value: cefotaxime

value: resistant


text: Zon Laboratory, Children's Hospital Boston

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Santa Cruz SC-265

characteristic: antibody catalog number

text: Pro-erythroblasts

characteristic: cell type

characteristic: chip antibody

text: Homo sapiens

text: GATA1 ChIP-seq CD34 erythroid BIO


text: live

text: Generic

characteristic: NCBI submission package

text: Santa Cruz SC-265

text: Pro-erythroblasts

text: Homo sapiens

characteristic: organism

text: GATA1 ChIP-seq CD34 erythroid BMP

characteristic: title


text: live

text: Generic

text: Santa Cruz SC-7965

text: Pro-erythroblasts

text: Homo sapiens

text: SMAD1 ChIP-seq CD34 ertyhroid BMP


text: live

text: Generic

text: Santa Cruz SC-7965

text: Hematopoietic Stem & Progenitor Cells

text: Homo sapiens

text: SMAD1 ChIP-seq CD34+ progenitors BMP


text: live

text: Generic

text: Santa Cruz SC-8631

text: Hematopoietic Stem & Progenitor Cells

text: Homo sapiens

text: TCF7L2 ChIP-seq CD34 progenitors BIO


text: live

text: Generic

text: None WCE

text: Pro-erythroblasts

text: WCE

text: Homo sapiens

text: Input ChIP-Seq CD34 erythroid BIO


text: live

text: Generic

text: None WCE

text: Pro-erythroblasts

text: WCE

text: Homo sapiens

text: Input ChIP-Seq CD34 erythroid BMP


text: live

text: Generic

text: None WCE

text: Hematopoietic Stem & Progenitor Cells

text: WCE

text: Homo sapiens

text: Input ChIP-seq CD34+ progenitors BIO


text: live

text: Generic

text: None WCE

text: Hematopoietic Stem & Progenitor Cells

text: WCE

text: Homo sapiens

text: Input ChIP-seq CD34+ progenitors BMP


text: live

text: Generic

text: Santa Cruz SC-265

characteristic: cell line

text: Homo sapiens

text: GATA1 ChIP-seq K562 BIO


characteristic: External Id

text: live

text: Generic

text: Santa Cruz SC-265

text: Homo sapiens

text: GATA1 ChIP-seq K562 BMP


characteristic: INSDC center name

text: live

text: Generic

text: Santa Cruz SC-9008

text: Homo sapiens

text: GATA2 ChIP-seq K562 BIO


characteristic: INSDC secondary accession

text: live

text: Generic

text: Santa Cruz SC-9008

text: Homo sapiens

text: GATA2 ChIP-seq K562 BMP


text: live

text: Generic

text: Santa Cruz SC-7965

text: Homo sapiens

text: SMAD1 ChIP-Seq K562 bmp4


text: live

text: Generic

text: Santa Cruz SC-7965

text: Homo sapiens

text: SMAD1 ChIP-Seq K562 dorso


text: live

text: Generic

text: Santa Cruz SC-8631

text: Homo sapiens

text: TCF7L2 ChIP-seq K562 BIO


text: live

text: Generic

text: None WCE

text: WCE

text: Homo sapiens

text: Input ChIP-Seq K562


text: live

text: Generic

text: None WCE

text: WCE

text: Homo sapiens

text: Input ChIP-Seq K562 BIO


text: live

text: Generic

text: Santa Cruz SC-9314

text: CEBPA

text: Homo sapiens

text: CEBPA ChIP-Seq U937 BIO


text: live

text: Generic

text: Santa Cruz SC-9314

text: CEBPA

text: Homo sapiens

text: CEBPA ChIP-Seq U937 DMSO


text: live

text: Generic

text: Santa Cruz SC-6031

text: Homo sapiens

text: SMAD1 ChIP-Seq U937 BMP4


text: live

text: Generic

text: Santa Cruz SC-8631

text: Homo sapiens

text: TCF7L2 ChIP-seq U937 BIO


text: live

text: Generic

text: None WCE

text: WCE

text: Homo sapiens

text: Input ChIP-Seq U937 BIO


text: live

text: Generic

text: None WCE

text: WCE

text: Homo sapiens

text: Input ChIP-Seq U937 DMSO


text: live

text: Generic

text: CEBPA

text: Santa Cruz

characteristic: chip antibody vendor

text: Homo sapiens

text: CEBPA ChIP-Seq K562-C/EBPA bmp4


characteristic: INSDC first public

text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

text: SMAD1 ChIP-Seq K562-C/EBPA bmp4


text: live

text: Generic

characteristic: SRA accession

text: WCE

text: Homo sapiens

text: Input ChIP-Seq K562-C/EBPA bmp4


characteristic: INSDC last update

text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

text: GATA1 ChIP-seq K562


text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

text: GATA2 ChIP-seq K562


text: live

text: Generic

text: CEBPA

text: Santa Cruz

text: Homo sapiens

text: CEBPA ChIP-Seq U937 bmp4


text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

text: H3K4me1 ChIP-seq K562 BIO


text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

text: H3K4me1 ChIP-seq K562 bmp4


text: Microbiology-Immunology, Northwestern University

text: live

text: Generic

text: Homo sapiens

text: primary effusion lymphoma cell line BC-1

text: BC-1 cells small RNA


text: live

text: Generic

text: Homo sapiens

text: primary effusion lymphoma cell line BC-3

text: BC-3 cells small RNA


text: live

text: Generic

text: Millipore anti-Ago2 clone 9E8.2

characteristic: antibody

text: Ago2 (EIF2C2)

characteristic: immunoprecipitated protein

text: Homo sapiens

text: 4-SU / 365 nm

characteristic: photoactivatable ribonucleoside and crosslinking wavelength

text: Ago2 PAR-CLIP BC-1 cells lane 1


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Millipore anti-Ago2 clone 9E8.2

text: Ago2 (EIF2C2)

text: Homo sapiens

text: 4-SU / 365 nm

text: Ago2 PAR-CLIP BC-1 cells lane 2


text: live

text: Generic

text: Millipore anti-Ago2 clone 9E8.2

text: Ago2 (EIF2C2)

text: Homo sapiens

text: 4-SU / 365 nm

text: Ago2 PAR-CLIP BC-3 cells lane 1


text: live

text: Generic

text: Millipore anti-Ago2 clone 9E8.2

text: Ago2 (EIF2C2)

text: Homo sapiens

text: 4-SU / 365 nm

text: Ago2 PAR-CLIP BC-3 cells lane 2


text: Tom Owen-Hughes, College of Life Sciences, University of Dundee

text: live

text: Generic

text: gel purified mononucleosomes

characteristic: library selection

text: Saccharomyces cerevisiae

text: Mnase digested chromatin

characteristic: strain


text: live

text: Generic

characteristic: NCBI submission package

text: 9E10-anti myc, Millipore cat no:05-419

characteristic: chip antibody

text: ChIP

text: Saccharomyces cerevisiae

characteristic: organism

text: ChIP


characteristic: External Id

text: University of California - Davis, Drosophila Population Genomics Project

text: live

text: Generic

text: A highly inbred European population (Leiden, The Netherlands) provided by A. J. Davis. http://www.genetics.org/content/165/3/1269.full.pdf html

characteristic: description

text: Drosophila melanogaster

characteristic: title


text: Yale University

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: age

text: community dwellers

characteristic: category

text: human oral metagenome

characteristic: patient

characteristic: sample

text: gum

characteristic: source

text: human oral metagenome


text: Yale University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: community dwellers

text: human oral metagenome

text: tongue

text: human oral metagenome


text: Yale University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Intensive Care Unit

text: human oral metagenome

text: yes

text: gum

text: human oral metagenome


text: Yale University

text: live

text: Generic

text: Intensive Care Unit

text: human oral metagenome

characteristic: organism

text: no

text: gum

text: human oral metagenome


characteristic: External Id

text: Yale University

text: live

text: Generic

text: Intensive Care Unit

text: human oral metagenome

text: no

text: tongue

text: human oral metagenome


text: Yale University

text: live

text: Generic

text: residential nursing home

text: human oral metagenome

text: gum

text: human oral metagenome


text: Yale University

text: live

text: Generic

text: residential nursing home

text: human oral metagenome

text: tongue

text: human oral metagenome


text: Yale University

text: live

text: Generic

text: Intensive Care Unit

text: human oral metagenome

text: yes

text: tongue

text: human oral metagenome


text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae GA40563

characteristic: strain

text: Streptococcus pneumoniae GA40563

value: susceptible

value: sparfloxacin

value: trimethoprim-sulfamethoxazole

value: vancomycin

value: linezolid


characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: USA

text: Generic

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA13224

text: Streptococcus pneumoniae GA13224

characteristic: title

value: rifampin

value: clindamycin

value: trovafloxacin

value: cefuroxime

value: tetracycline

value: amoxicillin


text: live

text: USA

text: Generic

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA18068

text: Streptococcus pneumoniae GA18068

value: ciprofloxacin

value: meropenem

value: chloramphenicol

value: quinupristin-dalfopristin

value: levofloxacin


text: Hubrecht Institute

text: live

text: Generic

text: Mus musculus

text: size fractionated RNA from mouse hippocampus before ECS

text: 0 hr

characteristic: time

text: hippocampus

characteristic: tissue

text: Untreated mouse hippocampus replicate 1


text: Hubrecht Institute

characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus

text: size fractionated RNA from mouse hippocampus following ECS

text: 0.5 hr

text: hippocampus

text: hippocampus 0.5h following ECS replicate 1


text: Hubrecht Institute

characteristic: INSDC last update

text: live

text: Generic

text: Mus musculus

text: 1 hr

text: hippocampus

text: hippocampus 1h following ECS replicate 1


text: Hubrecht Institute

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: 3 hr

text: hippocampus

text: hippocampus 3h following ECS replicate 1


text: Hubrecht Institute

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: 6 hr

text: hippocampus

text: hippocampus 6h following ECS replicate 1


text: Hubrecht Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Mus musculus

text: 24 hr

text: hippocampus

text: hippocampus 24h following ECS replicate 1


text: Hubrecht Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Mus musculus

text: 0 hr

text: hippocampus

text: Untreated mouse hippocampus replicate 2


text: Hubrecht Institute

text: live

text: Generic

text: Mus musculus

characteristic: organism

text: 0.5 hr

text: hippocampus

text: hippocampus 0.5h following ECS replicate 2


characteristic: External Id

text: Hubrecht Institute

text: live

text: Generic

text: Mus musculus

text: 1 hr

text: hippocampus

text: hippocampus 1h following ECS replicate 2


text: Hubrecht Institute

text: live

text: Generic

text: Mus musculus

text: 3 hr

text: hippocampus

text: hippocampus 3h following ECS replicate 2


text: Hubrecht Institute

text: live

text: Generic

text: Mus musculus

text: 6 hr

text: hippocampus

text: hippocampus 6h following ECS replicate 2


text: Hubrecht Institute

text: live

text: Generic

text: Mus musculus

text: 24 hr

text: hippocampus

text: hippocampus 24h following ECS replicate 2


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA47179

text: Streptococcus pneumoniae GA47179

value: resistant

value: Streptococcus pneumoniae

value: cefotaxime

value: erythromycin

value: penicillin

value: intermediate

value: telithromycin

value: ceftriaxone


text: University of Toronto

text: live

text: Generic

text: hESC cells

characteristic: cell type

text: Homo sapiens

text: H9 hESCs transfected with a control, non targeting siRNA pool

text: Control siRNAs


text: University of Toronto

text: live

text: Generic

text: hESC cells

text: Homo sapiens

text: H9 hESCs transfected with an siRNA pool targeting exon 18

text: exon 18 siRNAs


text: University of Toronto

text: live

text: Generic

text: hESC cells

text: Homo sapiens

text: H9 hESCs transfected with an siRNA pool targeting exon 18b

text: exon 18b siRNAs


text: Lovett, Genetics, Washington University in St Louis

text: live

text: Generic

characteristic: developmental stage

text: Gallus gallus

text: frontonasal prominence neural crest cells

text: chicken

characteristic: species


characteristic: INSDC center name

text: live

text: Generic

text: Coturnix japonica

text: quail


characteristic: INSDC secondary accession

text: live

text: Generic

text: Anas platyrhynchos

text: duck


text: live

text: USA

text: Generic

text: Streptococcus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae GA47461

characteristic: strain

text: Streptococcus pneumoniae GA47461

characteristic: title

value: susceptible

value: linezolid

value: rifampin

value: trimethoprim-sulfamethoxazole

value: clindamycin

value: vancomycin


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Bone marrow

characteristic: body site

text: GRU-MDS

text: Acute lymphoblastic leukemia

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

characteristic: study design

text: Leukemia, T-cell

characteristic: study disease

text: Sequencing of ETP T-ALL

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Leukemia, T-cell tumor DNA sample from Bone marrow of a human male participant in the dbGaP study Sequencing of ETP T-ALL


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Bone marrow

text: GRU-MDS

text: Bone marrow

text: No

text: Homo sapiens

characteristic: organism

text: male

text: Tumor vs. Matched-Normal

text: Leukemia, T-cell

text: Sequencing of ETP T-ALL

text: Yes

text: Non-tumor DNA sample from Bone marrow of a human male participant in the dbGaP study Sequencing of ETP T-ALL

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Peripheral Blood

characteristic: body site

text: GRU-MDS

text: Bone marrow

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

text: Leukemia, T-cell

text: Sequencing of ETP T-ALL

text: Yes

text: Non-tumor DNA sample from Peripheral Blood of a human male participant in the dbGaP study Sequencing of ETP T-ALL


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Bone marrow

text: GRU-MDS

text: Acute lymphoblastic leukemia

text: Yes

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

characteristic: study design

text: Leukemia, T-cell

characteristic: study disease

text: Sequencing of ETP T-ALL

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Leukemia, T-cell tumor DNA sample from Bone marrow of a human female participant in the dbGaP study Sequencing of ETP T-ALL


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Bone marrow

text: GRU-MDS

text: Bone marrow

text: No

text: Homo sapiens

characteristic: organism

text: female

text: Tumor vs. Matched-Normal

text: Leukemia, T-cell

text: Sequencing of ETP T-ALL

text: Yes

text: Non-tumor DNA sample from Bone marrow of a human female participant in the dbGaP study Sequencing of ETP T-ALL

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Peripheral Blood

characteristic: body site

text: GRU-MDS

text: Acute lymphoblastic leukemia

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

text: Leukemia, T-cell

text: Sequencing of ETP T-ALL

text: Yes

text: Leukemia, T-cell tumor DNA sample from Peripheral Blood of a human male participant in the dbGaP study Sequencing of ETP T-ALL


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: Peripheral Blood

text: GRU-MDS

text: Acute lymphoblastic leukemia

text: Yes

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

characteristic: study design

text: Leukemia, T-cell

characteristic: study disease

text: Sequencing of ETP T-ALL

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Leukemia, T-cell tumor DNA sample from Peripheral Blood of a human female participant in the dbGaP study Sequencing of ETP T-ALL


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Peripheral Blood

text: GRU-MDS

text: Bone marrow

text: No

text: Homo sapiens

characteristic: organism

text: female

text: Tumor vs. Matched-Normal

text: Leukemia, T-cell

text: Sequencing of ETP T-ALL

text: Yes

text: Non-tumor DNA sample from Peripheral Blood of a human female participant in the dbGaP study Sequencing of ETP T-ALL

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: GRU

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

text: Colitis, Ulcerative

text: Yes

text: DNA sample from a human male participant in the dbGaP study NIDDK IBD Genetics Consortium Ulcerative Colitis Genome-Wide Association Study


text: dbGaP

text: live

text: Generic

text: DNA

text: GRU

text: Homo sapiens

text: female

text: Case-Control

characteristic: study design

text: Colitis, Ulcerative

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

text: DNA sample from a human female participant in the dbGaP study NIDDK IBD Genetics Consortium Ulcerative Colitis Genome-Wide Association Study


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: GRU

text: Homo sapiens

text: male

text: Case-Control

text: Colitis, Ulcerative

text: NIDDK IBD Genetics Consortium Ulcerative Colitis Genome-Wide Association Study

text: Yes

characteristic: submitter handle


text: dbGaP

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: DNA

text: GRU

text: Homo sapiens

characteristic: organism

text: female

text: Case-Control

text: Colitis, Ulcerative

text: Yes

characteristic: title


text: dbGaP

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: IBDO

text: Homo sapiens

text: female

text: Case-Control

text: Colitis, Ulcerative

text: Yes


text: dbGaP

text: live

text: Generic

text: DNA

text: IBDO

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

characteristic: study design

text: Colitis, Ulcerative

characteristic: study disease

characteristic: study name

text: Yes


characteristic: External Id

text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: DNA

text: Blood

characteristic: body site

text: GRU

text: Blood

characteristic: histological type

text: Homo sapiens

text: male

text: Case-Control

text: Ophthalmoplegia, Chronic Progressive External

text: Exome Sequencing of arPEO

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

text: DNA sample from Blood of a human male participant in the dbGaP study Exome Sequencing of arPEO


text: The University of Arizona

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DH10B T1 phage resistant

characteristic: lab-host

text: Leersia perrieri

characteristic: organism

text: HindIII

text: HindIII

text: young leaves

characteristic: tissue-type

characteristic: title

text: Plasmid

characteristic: vector


characteristic: External Id

text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae GA52612

characteristic: strain

text: Streptococcus pneumoniae GA52612

value: cefuroxime

value: amoxicillin

value: tetracycline

value: meropenem

value: chloramphenicol

value: ciprofloxacin


characteristic: INSDC center name

text: live

text: USA

text: Generic

characteristic: SRA accession

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA13499

text: Streptococcus pneumoniae GA13499

value: Streptococcus pneumoniae

value: erythromycin

value: cefotaxime

value: levofloxacin

value: quinupristin-dalfopristin

value: resistant

value: trovafloxacin


characteristic: INSDC first public

text: live

characteristic: INSDC status

text: USA

text: Generic

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA49194

text: Streptococcus pneumoniae GA49194

value: linezolid

value: susceptible

value: intermediate

value: telithromycin

value: ceftriaxone

value: penicillin

value: rifampin


text: live

text: USA

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA47210

text: Streptococcus pneumoniae GA47210

value: amoxicillin

value: cefuroxime

value: meropenem

value: clindamycin

value: tetracycline

value: vancomycin

value: trimethoprim-sulfamethoxazole


text: Orr-Weaver, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: orc2 (steve bell lab, MIT)

characteristic: antibody

text: OrR

characteristic: genotype

text: Drosophila melanogaster

characteristic: organism

text: third instar salivary gland from OrR

text: third instar salivary gland

characteristic: tissue


characteristic: External Id

text: live

text: Generic

text: orc2 (steve bell lab, MIT)

text: SuUR

text: Drosophila melanogaster

text: third instar salivary gland from SuUR

text: third instar salivary gland

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: USA

text: Generic

text: Streptococcus

text: Homo sapiens

text: joint

text: musculoskeletal system

text: Streptococcus pneumoniae GA47628

text: Streptococcus pneumoniae GA47628

value: Streptococcus pneumoniae

value: erythromycin

value: quinupristin-dalfopristin

value: chloramphenicol

value: levofloxacin

value: ciprofloxacin

value: cefotaxime


text: live

text: Generic

text: Streptococcus pneumoniae GA02254

text: Streptococcus pneumoniae GA02254


text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: blood

text: blood

text: Streptococcus pneumoniae GA44386

text: Streptococcus pneumoniae GA44386

value: susceptible

value: linezolid

value: resistant

value: ceftriaxone

value: intermediate

value: telithromycin


text: live

text: GBR

text: Generic

text: Streptococcus

characteristic: isolate

text: Streptococcus pneumoniae England14-9

characteristic: strain

text: Streptococcus pneumoniae England14-9

value: penicillin


RRL DNA

text: USDA Agriculture Research Service

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Reduced representation library constructed with genomic DNA pooled from 96 unrelated rainbow trout individuals.

characteristic: description

text: Oncorhynchus mykiss

text: Rainbow trout genomic DNA


text: Institute for Genome Sciences, School of Medicine, University of Maryland

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Escherichia coli O139:H28 str. E24377A

text: Bacterial culture

text: LB

text: LB

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission package

text: Escherichia coli O139:H28 str. E24377A

characteristic: organism

text: Bacterial culture

text: LB + bile

text: LB + bile


characteristic: External Id

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Anaerobaculum mobile DSM 13181

text: Acetomicrobium mobile DSM 13181

text: DSM 13181

text: Generic sample from Anaerobaculum mobile DSM 13181


text: UMDNJ

text: live

text: Generic

text: Caenorhabditis elegans

text: input nuclei

text: mixed tissues

characteristic: tissue

text: 3'end-seq for input sample

characteristic: title


text: UMDNJ

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Caenorhabditis elegans

text: sorted nuclei

text: intenstine

text: 3'end-seq for sorted sample


text: Stanford University

text: live

text: Generic

text: PBMC

characteristic: cell type

text: Whole genome sequencing was performed for mother of UNK (UNKM) for genome phasing.

text: UNKM

characteristic: individual id

text: Homo sapiens

text: blood

characteristic: tissue type

text: UNKM WGS data from Illumina platform


characteristic: INSDC center name

text: live

text: Generic

text: Deinococcus peraridilitoris DSM 19664

text: Deinococcus peraridilitoris DSM 19664

text: DSM 19664

characteristic: strain

text: Generic sample from Deinococcus peraridilitoris DSM 19664


text: live

text: Generic

characteristic: SRA accession

characteristic: culture-collection

text: Escherichia coli DSM 30083

characteristic: description

text: Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775

text: DSM 30083

text: Generic sample from Escherichia coli DSM 30083


characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Solitalea canadensis DSM 3403

text: Solitalea canadensis DSM 3403

text: DSM 3403

text: Generic sample from Solitalea canadensis DSM 3403


text: National Institute of Agrobiological Sciences

text: live

text: Generic

characteristic: NCBI submission package

text: 5th-instar larva

characteristic: dev-stage

text: Bombyx mori

characteristic: organism

text: mixed

characteristic: sex

text: corpora allata

characteristic: tissue-type

text: caL-


characteristic: External Id

characteristic: INSDC last update

text: live

text: Generic

text: 5th-instar larva

text: Bombyx mori

text: mixed

text: HABATAKI

text: corpora allata

text: fcaL

characteristic: title


text: live

text: Generic

text: 5th-instar larva

text: Bombyx mori

text: male

text: fat body

text: ffbm


text: live

text: Generic

text: 5-th instar day-2 larva

text: Bombyx mori

text: mixed

text: midgut

text: fmgV


text: live

text: Generic

text: 5th-instar larva

text: Bombyx mori

text: mixed

text: nerve system and brain

text: fner


text: live

text: Generic

text: 5th-instar larva

text: Bombyx mori

text: male

text: fat body

text: ftes


text: live

text: Generic

text: unfertilized egg

text: Bombyx mori

text: mixed

text: embryo

text: fufe


text: live

text: Generic

text: pupal stage

text: Bombyx mori

text: mixed

text: wing

text: fwgP


text: live

text: Generic

text: 5th-instar larva

text: Bombyx mori

text: mixed

text: malpighian tubule

text: bmmt


text: live

text: Generic

text: mixed stages 5th-instar larva to pupa

text: Bombyx mori

text: mixed

text: C202 x J201

text: compound eyes

text: cesb


text: live

text: Generic

text: fifth instar larval stage (day-2 to day-3)

text: Bombyx mori

text: N137 X C146

text: mixture of antenna and maxillary galea

text: famL


text: Genoscope - Centre National de Sequencage

text: live

text: Generic

text: Botrytis cinerea

text: Botryotinia fuckeliana other stresses cDNA library


text: live

text: Generic

text: Botrytis cinerea

text: Botryotinia fuckeliana 2 days old mycelia in rich medium cDNA library


text: College of Veterinary Science & Animal Husbandry

text: live

text: Generic

text: Total RNA was isolated from mammary gland of four different induced lactogenic stages of buffalo (0th, 7th, 14th and 21st day of Estrogen-Progesterone treatment). Differential ESTs were identified by Modified Suppression Subtractive Hybridization.

text: Mammary tissue post estrogen-progesterone treatment

characteristic: lab-host

text: Mammary gland

characteristic: organ

text: Bubalus bubalis

text: EcoRV

text: EcoRV

text: Female

text: Surti breed

text: Mammary tissue

text: Mammary gland tissue of Estrogen-progesterone treated female Buffalo

characteristic: vector


text: NRC Plant Biotechnology Institute

characteristic: INSDC center name

text: live

text: Generic

text: Cannabis sativa


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Frateuria aurantia DSM 6220

text: Frateuria aurantia DSM 6220

text: DSM 6220

characteristic: strain

text: Generic sample from Frateuria aurantia DSM 6220


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: Holophaga foetida DSM 6591

characteristic: description

text: Holophaga foetida DSM 6591

text: DSM 6591

text: Generic sample from Holophaga foetida DSM 6591


Arytera littoralis 1

text: Seoul National University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 16S rRNA sequences of phyllosphere bacterial community from Arytera littoralis #1

text: organismal metagenomes

text: 16S rRNA sequences of phyllosphere bacterial communities in Malaysia


Arytera littoralis 2

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes

characteristic: organism


Arytera littoralis 3

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Arytera littoralis 4

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Dillenia excelsia 1

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Dillenia excelsia 2

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Dyera costulala 1

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Dyera costulata 2

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Dyera costulata 3

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Dyera costulata 4

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Gnetum sp. 1

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Gnetum sp. 2

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Gnetum sp. 3

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Gnetum sp. 4

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Schizostachyum brachycladum 1

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Schizostachyum brachycladum 2

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Schizostachyum brachycladum 3

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Shorea maxima 1

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Shorea maxima 2

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


Shorea maxima 3

text: Seoul National University

text: live

text: Generic

text: organismal metagenomes


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Bone marrow

characteristic: body site

text: GRU

text: Acute lymphoblastic leukemia

characteristic: histological type

text: Yes

characteristic: is tumor

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

characteristic: study design

characteristic: study disease

text: The Genetic Basis of Hypodiploid ALL

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Precursor Cell Lymphoblastic Leukemia-Lymphoma tumor DNA sample from Bone marrow of a human male participant in the dbGaP study The Genetic Basis of Hypodiploid ALL


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Bone marrow

text: GRU

text: Acute lymphoblastic leukemia

text: Yes

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

text: The Genetic Basis of Hypodiploid ALL

text: Yes

text: Precursor Cell Lymphoblastic Leukemia-Lymphoma tumor DNA sample from Bone marrow of a human female participant in the dbGaP study The Genetic Basis of Hypodiploid ALL

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Bone marrow

characteristic: body site

text: GRU

text: Acute lymphoblastic leukemia

characteristic: histological type

text: Yes

characteristic: is tumor

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

characteristic: study design

text: Precursor Cell Lymphoblastic Leukemia-Lymphoma

text: The Genetic Basis of Hypodiploid ALL

text: Yes


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: Bone marrow

text: GRU

text: Bone marrow

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study disease

text: The Genetic Basis of Hypodiploid ALL

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Bone marrow of a human male participant in the dbGaP study The Genetic Basis of Hypodiploid ALL


ET biofilm: pyrosequencing data

text: university of ghent

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: biofilm metagenome

text: pyrosequencing of amplified 16S rRNA genes from endotracheal biofilms

characteristic: title


yeast ribosomal ncRNAs

text: Adam Mickiewicz University in Poznan

text: live

text: Generic

text: Saccharomyces cerevisiae

characteristic: organism

text: Ribosome-associated small RNAs from Saccharomyces cerevisiae