text: Broad Institute ; Harvard University

text: live

text: Generic

text: Homo sapiens

text: testes tissue

text: testes

text: RNA-Seq Testes


status: PUBLIC

characteristic: External Id

text: Broad Institute ; Harvard University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

characteristic: organism

text: liver tissue

tag: attribute

text: liver

characteristic: tissue

text: RNA-Seq Liver

characteristic: title


text: Broad Institute ; Harvard University

text: live

text: Generic

text: HeLa

characteristic: cell line

text: Homo sapiens

text: HeLa cell line

text: RNA-Seq HeLa


text: Broad Institute ; Harvard University

text: live

text: Generic

text: Homo sapiens

text: Placenta Tissue

text: placenta

text: RNA-Seq Placenta


text: Broad Institute ; Harvard University

text: live

text: Generic

text: Cultured primary human lung fibroblast

characteristic: cell type

text: Homo sapiens

text: Cultured human lung fibroblast

text: RNA-Seq Lung Fibroblasts batch1, sample 1


text: Broad Institute ; Harvard University

text: live

text: Generic

text: Cultured primary human lung fibroblast

text: Homo sapiens

text: Cultured human lung fibroblast

text: RNA-Seq Lung Fibroblasts batch1, sample 2


text: Broad Institute ; Harvard University

text: live

text: Generic

text: Cultured primary human lung fibroblast

text: Homo sapiens

text: Cultured human lung fibroblast

text: RNA-Seq Foreskin Fibroblasts


text: Broad Institute ; Harvard University

text: live

text: Generic

text: Cultured primary human foreskin fibroblast

text: Homo sapiens

text: Cultured human foreskin fibroblast

text: RNA-Seq Lung Fibroblasts batch 3


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae GA14688

characteristic: strain

text: Streptococcus pneumoniae GA14688

type: AMR curated data - CABBAGE

value: trimethoprim-sulfamethoxazole

value: resistant

value: Streptococcus pneumoniae

value: cefuroxime

value: erythromycin

value: susceptible

value: meropenem

value: levofloxacin

value: clindamycin

value: rifampin

value: quinupristin-dalfopristin

value: penicillin

value: amoxicillin

value: intermediate

value: chloramphenicol

value: gatifloxacin

value: tetracycline

value: vancomycin

value: cefotaxime


characteristic: External Id

text: UIUC

characteristic: INSDC center name

text: live

text: Generic

text: Sequences were PCR amplicons (nosz gene), which seqeunced using barcoded 454-pyrosequencing.

characteristic: description

text: uncultured soil bacterium

text: Sample of uncultured soil bacterium


text: UIUC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Sequences were PCR amplicons (arch gene), which seqeunced using barcoded 454-pyrosequencing.

text: uncultured soil bacterium

text: Sample of uncultured soil bacterium


text: UIUC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Sequences were PCR amplicons (bact gene), which seqeunced using barcoded 454-pyrosequencing.

text: uncultured soil bacterium

text: Sample of uncultured soil bacterium


text: UIUC

text: live

text: Generic

characteristic: SRA accession

text: Sequences were PCR amplicons (nifh gene), which seqeunced using barcoded 454-pyrosequencing.

text: uncultured soil bacterium

characteristic: organism

text: Sample of uncultured soil bacterium


text: University of California - Davis, Drosophila Population Genomics Project

text: live

text: Generic

text: Sub-Saharan African population - Zambia (Siavonga). Haploid embryo.

text: Drosophila melanogaster

characteristic: title


text: Rajewsky lab, Systems Biology of Gene Regulatory Elements, Max Delbrueck Center for Molecular Medicine

text: live

text: Generic

text: HeLa

characteristic: cell line

text: mock

characteristic: knockdown

text: Homo sapiens

text: HeLa mock knockdown 5d

characteristic: time post transfection

text: HeLa mock knockdown 5d


text: live

text: Generic

text: HeLa

text: ELAVL1/HuR siRNA1 (see Lebedeva et. Al 2011)

text: Homo sapiens

text: HeLa ELAVL1/HuR siRNA1 2d

text: HeLa ELAVL1/HuR siRNA1 2d


text: live

text: Generic

text: HeLa

text: Homo sapiens

text: HeLa ELAVL1/HuR siRNA1 5d

text: HeLa ELAVL1/HuR siRNA1 5d


text: live

text: Generic

characteristic: antibody

text: Santa Cruz

characteristic: antibody manufacturer

text: HeLa

text: DMEM

characteristic: culture medium

text: Homo sapiens

text: HeLa 4SU DMEM PAR-CLIP

text: HeLa 4SU DMEM PAR-CLIP


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Santa Cruz

text: HeLa

text: SILAC

text: Homo sapiens

text: HeLa 4U SILAC PAR-CLIP

text: HeLa 4SU SILAC PAR-CLIP


characteristic: INSDC first public

text: live

text: Generic

text: Santa Cruz

text: HeLa

text: SILAC

text: Homo sapiens

text: HeLa 6SG SILAC PAR-CLIP

text: HeLa 6SG SILAC PAR-CLIP


characteristic: INSDC last update

text: live

text: Generic

text: HeLa

text: Homo sapiens

text: HeLa cell culture

text: HeLa sRNA mock sRNA


characteristic: INSDC secondary accession

text: live

text: Generic

text: HeLa

text: Homo sapiens

text: HeLa cell culture

text: HeLa ELAV1/HuR sRNA siRNA1


text: live

characteristic: INSDC status

text: Generic

text: HeLa

text: Homo sapiens

text: HeLa cell culture

text: HeLa ELAV1/HuR sRNA siRNA2


text: Tochigi Prefectural Agricultural Experiment Station

text: live

text: Generic

characteristic: NCBI submission model

characteristic: cultivar

text: Fragaria x ananassa

text: above-ground part

characteristic: tissue-type

text: pGEM-T Easy Subtraction cDNA of starawberry inoculated Glomerella cingulata


text: live

text: Generic

characteristic: NCBI submission package

text: Tochiotome

text: Fragaria x ananassa

characteristic: organism

text: green fruit

text: pBluescript II SK (+) Strawberry green fruit cDNA


text: live

text: Generic

text: Tochiotome

text: Fragaria x ananassa

text: red fruit

text: pBluescript II SK (+) Strawberry red fruit cDNA

characteristic: title


text: live

text: Generic

text: Tochiotome

text: Fragaria x ananassa

text: flower

text: pBluescript II SK (+) Strawberry flower cDNA


text: Hiroshima University

text: live

text: Generic

text: Mus musculus

text: Mus musculus library (Takihara Y)


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

characteristic: SRA accession

text: Echinacea purpurea

text: Echinacea purpurea flower- disc floret flower stage 5


text: live

text: Generic

text: Echinacea purpurea

text: Echinacea purpurea flower- disc florets flower stage 3


text: live

text: Generic

text: Echinacea purpurea

text: Echinacea purpurea immature flower- stage 3


text: live

text: Generic

text: Echinacea purpurea

text: Echinacea purpurea entire root- part #11


text: live

text: Generic

text: Echinacea purpurea

text: Echinacea purpurea flower- disc floret flower stage 4


text: live

text: Generic

text: Echinacea purpurea

text: Echinacea purpurea stem- petioles part #6 from older stem


text: live

text: Generic

text: Echinacea purpurea

text: Echinacea purpurea stem - petioles part #9 (from older leaf from basal part)


text: live

text: Generic

text: Echinacea purpurea

text: Echinacea purpurea normalized library, mature flower, primary stem, intermediate primary stem, leaf


text: Stanford University

text: live

text: Generic

text: 100 ml of whole blood was drawn from a healthy, anonymous volunteer of Caucasian descent, who is properly consented, at the Stanford University Hospital. Peripheral blood mononuclear cells (PBMCs) were isolated with Ficoll gradient (Lymphocyte Separation Medium, MP Biomedicals, OH) centrifugation according to the manufacture’s protocol. Genomic DNA was prepared from isolated PBMCs with the AllPrep DNA/RNA/Protein Mini Kit (QIAGEN) and treated with RNase A to remove remaining RNA. DNA concentration was quantified with Invitrogen’s Qubit Fluorometer. This DNA was then used for exome enrichment and sequencing downstream.

characteristic: description

text: Homo sapiens

text: DNA derived from blood of a normal patient of Caucasian descent.


text: The Institute of Medicinal Plant Development

text: live

text: Generic

text: the leaves of Digitalis purpurea

text: Digitalis purpurea

text: Digitalis purpurea


text: Broad Institute

text: live

text: Generic

text: Anopheles farauti

characteristic: sample id

text: Genomic DNA

characteristic: sample type

text: Other

characteristic: sex

characteristic: strain

text: Anopheles farauti FAR1 Genomic DNA sample FARA1_A


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Corynebacterium sp. KPL1817

characteristic: sample name

text: Generic sample from Corynebacterium sp. KPL1817


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Corynebacterium sp. KPL1998

text: Generic sample from Corynebacterium sp. KPL1998


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Propionibacterium sp. KPL2003

text: Generic sample from Propionibacterium sp. KPL2003


PRJNA67511.Anopheles christyi ACHKN1017

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Kikuyu town [Kenya]

characteristic: geographic location

text: Anopheles christyi

text: 2010-03-05 12:00AM

characteristic: sample collection date

text: Anopheles christyi ACHKN1017

text: Genomic DNA

text: Female

text: Anopheles christyi Genomic DNA sample Anopheles christyi ACHKN1017


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Propionibacterium sp. KPL2000

characteristic: organism

text: Generic sample from Propionibacterium sp. KPL2000

characteristic: title


text: Broad Institute

text: live

text: Generic

text: Escherichia coli PBD3

text: Generic sample from Escherichia coli PBD3


text: Broad Institute

text: live

text: Generic

text: Phascolarctobacterium faecium UC1_BHI_D

text: Phascolarctobacterium faecium 4_1_13G

text: Generic sample from Phascolarctobacterium faecium UC1_BHI_D


text: Broad Institute

text: live

text: Generic

text: female

characteristic: host sex

text: Leptonychotes weddellii

text: Generic sample from Leptonychotes weddellii


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Hypholoma sublatericium FD-334 SS-4

characteristic: description

text: Hypholoma sublateritium FD-334 SS-4

text: FD-334 SS-4

text: Generic sample from Hypholoma sublateritium FD-334 SS-4


Infant 1 Sample 1 Bacteria V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 1 Sample 1 Bacteria V6-V8


Infant 2 Sample 1 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 2 Sample 1 Bacteria V6-V8


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Echinacea purpurea

text: Echinacea purpurea entire root


text: Shilatifard, Stowers Institute for Medical Research

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: passage 4-15

characteristic: passages


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: passage 4-15

text: serum-induced

characteristic: treatment


text: Prof. John Mattick, Institute for Molecular Bioscience, University of Queensland

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Hela

characteristic: cell type

text: Homo sapiens

text: Hela

text: Whole cell

characteristic: subcellular

text: Hela Dnase I hypersensitivity


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: BJ-tert

text: Homo sapiens

text: BJ-tert

text: Whole cell

text: BJ-tert Dnase I hypersensitivity


text: live

text: Generic

characteristic: SRA accession

text: 143B cells

text: Homo sapiens

characteristic: organism

text: 143B cells

text: Mitochondria

text: Mitochondria RNAseq


text: live

text: Generic

text: 143B cells

text: Homo sapiens

text: 143B cells

text: Mitoplast

text: Mitoplast RNAseq

characteristic: title


text: live

text: Generic

text: 143B cells

text: Homo sapiens

text: 143B cells

text: Mitochondria

text: Mitochondria Small RNA


text: live

text: Generic

text: 143B cells

text: Homo sapiens

text: 143B cells

text: Mitochondria

text: Mitochondria PARE 5' end sequencing (rep1)


text: Neurobiology, Yale University

text: live

text: Generic

text: cortical plate

characteristic: embryonic zone

text: Mus musculus

text: Cortical plate, sample1

characteristic: strain

text: cerebral cortex

characteristic: tissue origin


characteristic: External Id

text: Pasko Rakic, Neurobiology, Yale University

text: live

text: Generic

text: subventricular and intermediate zone

text: Mus musculus

text: Subventricular and intermediate zone, sample1

text: cerebral cortex


characteristic: INSDC center name

text: live

text: Generic

text: ventricular zone

text: Mus musculus

text: Ventricular zone, sample1

text: cerebral cortex


text: Neurobiology, Yale University

text: live

text: Generic

text: cortical plate

text: Mus musculus

text: Cortical plate, sample2

text: cerebral cortex


text: live

text: Generic

text: subventricular and intermediate zone

text: Mus musculus

text: Subventricular and intermediate zone, sample2

text: cerebral cortex


text: live

text: Generic

text: ventricular zone

text: Mus musculus

text: Ventricular zone, sample2

text: cerebral cortex


Barcelona

text: University of Pittsburgh

text: live

text: Generic

text: 10L of untreated wastewater was obtained from the wastewater treatment plant in Barcelona, Spain in September 2008 and stored for 2 hours at 4*C before processing. Virions were concentrated from the wastewater sample by organic flocculation based on the procedure previously described (Calgua et al., J. Virol Methods, 2008, vol 153, p.79-83). Briefly, 100ml of pre-flocculated skim milk solution (pH 3.5) was added to 10 L acidified raw sewage (pH 3.5) and mixed for 8 hours. Flocculants were allowed to settle and then centrifuged. The flocculated viral concentrate was resuspended in 15 ml phosphate buffer and then eluted in 30 mL of 0.25 M glycine pH 9.5 for 45 min at 4* C by slow agitation with vortexing. Suspended solids were separated by low speed centrifugation at 7,500 g for 30 min at 4* C and the high pH of the supernatant was stabilized by adding 20 mL of 2X PBS. Virions present in the supernatant were concentrated by ultracentrifugation at 100,000 g for 1 hr at 4* C and resuspended in phosphate buffer (1:2 v/v of 0.2 M Na2HPO4 and 0.2 M NaH2PO4).

characteristic: description

text: metagenomes

text: Barcelona virus preparation from raw sewage


Pittsburgh

text: University of Pittsburgh

characteristic: INSDC first public

text: live

text: Generic

text: 5L of untreated wastewater was obtained from the wastewater treatment plant in Pittsburgh, Pennsylvania (USA) in December 2009 and stored for 2 hours at 4*C before processing. Virions were concentrated from the wastewater sample by organic flocculation based on the procedure previously described (Calgua et al., J. Virol Methods, 2008, vol 153, p.79-83). Briefly, 100ml of pre-flocculated skim milk solution (pH 3.5) was added to 10 L acidified raw sewage (pH 3.5) and mixed for 8 hours. Flocculants were allowed to settle and then centrifuged. The flocculated viral concentrate was resuspended in 15 ml phosphate buffer and then eluted in 30 mL of 0.25 M glycine pH 9.5 for 45 min at 4* C by slow agitation with vortexing. Suspended solids were separated by low speed centrifugation at 7,500 g for 30 min at 4* C and the high pH of the supernatant was stabilized by adding 20 mL of 2X PBS. Virions present in the supernatant were concentrated by ultracentrifugation at 100,000 g for 1 hr at 4* C and resuspended in phosphate buffer (1:2 v/v of 0.2 M Na2HPO4 and 0.2 M NaH2PO4).

text: metagenomes

text: Pittsburgh viral preparation from raw sewage


Addis Ababa

text: University of Pittsburgh

characteristic: INSDC last update

text: live

text: Generic

text: Two samples (10L each) of untreated wastewater were obtained from the wastewater treatment plant in Addis Ababa, Egypt in June 2009 and processed on site. Virions were concentrated from the wastewater sample by organic flocculation based on the procedure previously described (Calgua et al., J. Virol Methods, 2008, vol 153, p.79-83). Briefly, 100ml of pre-flocculated skim milk solution (pH 3.5) was added to 10 L acidified raw sewage (pH 3.5) and mixed for 8 hours. Flocculants were allowed to settle and then centrifuged. The flocculated viral concentrate was resuspended in 15 ml phosphate buffer and then eluted in 30 mL of 0.25 M glycine pH 9.5 for 45 min at 4* C by slow agitation with vortexing. Suspended solids were separated by low speed centrifugation at 7,500 g for 30 min at 4* C and the high pH of the supernatant was stabilized by adding 20 mL of 2X PBS. Virions present in the supernatant were concentrated by ultracentrifugation at 100,000 g for 1 hr at 4* C and resuspended in phosphate buffer (1:2 v/v of 0.2 M Na2HPO4 and 0.2 M NaH2PO4).

text: metagenomes

text: Addis Ababa virus preparation from raw sewage


text: Clark Laboratory, Department of Biology, University of Utah

text: live

text: Generic

characteristic: accession

text: 11 days

characteristic: age

text: Arabidopsis thaliana

text: biological replicate 1

characteristic: replicate

text: 11-day-old seedling, Col-0

text: seedling

characteristic: tissue


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 10 days

text: Arabidopsis thaliana

text: biological replicate 1

text: 10-day-old root, Col-0

text: root


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: stage 12

text: Arabidopsis thaliana

characteristic: organism

text: biological replicate 1

text: stage 12 floral bud, Col-0

text: floral bud


text: live

text: Generic

text: 11 days

text: Arabidopsis thaliana

text: biological replicate 1

text: 11-day-old seedling, Can-0

text: seedling

characteristic: title


text: live

text: Generic

text: 10 days

text: Arabidopsis thaliana

text: biological replicate 1

text: 10-day-old root, Can-0

text: root


text: live

text: Generic

text: stage 12

text: Arabidopsis thaliana

text: biological replicate 1

text: stage 12 floral bud, Can-0

text: floral bud


text: Nuffield Department of Medicine, University of Oxford

text: live

text: Generic

text: Middle aged

characteristic: developmental stage

text: Mus musculus

text: Liver

text: Wild derived

characteristic: strain

text: Liver


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Middle aged

text: Heterocephalus glaber

text: Liver

text: Liver


text: School of Computer Science and Engineering, Hebrew University

characteristic: INSDC first public

text: live

text: Generic

text: anti-ZLD

characteristic: antibody

text: mitotic cycles 8-9

text: Drosophila melanogaster

text: Embryos

text: Oregon R

text: embryo

text: ZLD cycle 8


characteristic: INSDC last update

text: live

text: Generic

text: anti-ZLD

text: mitotic cycles 13-14

text: Drosophila melanogaster

text: Embryos

text: Oregon R

text: embryo

text: ZLD cycle 13


text: live

text: Generic

text: anti-ZLD

text: late mitotic cycle 14

text: Drosophila melanogaster

text: Embryos

text: Oregon R

text: embryo

text: ZLD cycle 14


text: Tea Research Association

text: live

text: Generic

text: Leaf

characteristic: organ

text: Camellia sinensis

text: cDNA AFLP of tea (Camellia sinensis L.) leaf infected with blister blight.

text: Plasmid

text: pGEM-T Easy

characteristic: vector


text: Tea Research Association

text: live

text: Generic

characteristic: cultivar

text: Leaf

text: Camellia sinensis

text: cDNA AFLP of drought stressed tea leaves at BW and WD.

text: Plasmid

text: pGEM-T Easy


text: Plant Biotechnology Center, College of Agriculture, Bikaner

text: live

text: Generic

text: The DDRT profile of drought up-regulated cDNA was generated from non-treated and treated leaves of Vigna aconitifolia variety RMO-435. Seeds of RMO-435 were grown in test tubes using filter paper bridge method in 1/4 strength MS salt under in vitro conditions 27degC with 12/12h light/dark photoperiod for 7 days. Seedlings were drought-treated by PEG for 7 days. Total genomic RNA was isolated from leaf tissue of both treated and untreated seedlings (Promega Kit). The differentially regulated cDNA pool was obtained by using the RT-PCR kit (Bangalore genei, Bangalore). Three 3? anchored Oligo dT primers (30 mer) and nine 5? arbitary primers were procured from Clonitec, GCC, Delhi. Differentially expressed cDNA were pooled then cloned in pGEM vector and transformed in DH5-alpha cells.

characteristic: description

text: Newly emerging leaves from 7 days old

characteristic: dev-stage

text: Vigna aconitifolia

text: Leaves

characteristic: tissue-type

text: Vigna DDRT drought

text: Plasmid

text: pGEM


lungExplant

text: Medical Biofilm Research Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Bacteria

text: Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper airway specimens can misrepresent infecting population


Sample 2001

text: Central Drug Research Institute

text: live

text: Generic

characteristic: SRA accession

text: During the year 1998-2000, resistance to the widely used antimonial drug sodium antimony gluconate (SAG) had reached alarming heights in India. At this time we had cultivated many isolates collected from the eastern region of India. The diagnostic criteria for Visceral Leishmaniasis (VL) were the presence of LD bodies (Leishman Donovan) in splenic aspirations performed and graded as per standard criteria. Isolate 2001, isolated on 01.02.2000, from Balia, Uttar Pradesh, responded to SAG therapy. Splenic aspirates were collected and adapted to culture. Assay for in vitro drug sensitivity to sodium antimony gluconate (SAG) was done. The virulence and level of susceptibility or resistance of these isolates was also confirmed in vivo, by infection in experimental animals. Species identity of these promastigotes was confirmed to be similar to the donovani in the sequence based RFLP of their single-copy protein-coding gene, N-acetylglucosamine-1-phosphate transferase.

text: Leishmania donovani

characteristic: organism

text: SAG sensitive L. donovani clinical isolate

characteristic: title


Sample 39

characteristic: External Id

text: Central Drug Research Institute

characteristic: INSDC center name

text: live

text: Generic

text: During the year 1998-2000, resistance to the widely used antimonial drug sodium antimony gluconate (SAG) had reached alarming heights in India. At this time we had cultivated many isolates collected from the eastern region of India. The diagnostic criteria for Visceral Leishmaniasis (VL) were the presence of LD bodies (Leishman Donovan) in splenic aspirations performed and graded as per standard criteria. Isolate 39, used for whole genome sequencing in this study, was isolated on 28.05.2000 from Muzaffarpur, Bihar from splenic aspirate of a patient who did not respond to SAG therapy. Splenic aspirates were collected and adapted to culture. Assay for in vitro drug sensitivity to sodium antimony gluconate (SAG) was done. The virulence and level of susceptibility or resistance of these isolates was also confirmed in vivo, by infection in experimental animals. Species identity of these promastigotes was confirmed to be similar to the donovani in the sequence based RFLP of their single-copy protein-coding gene, N-acetylglucosamine-1-phosphate transferase.

text: Leishmania donovani

text: SAG resistant Leishmania donovani clinical isolate


Infant 3 Sample 1 Bacterial V6-V8

text: Duke University

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: Infant 3 Sample 1 Bacterial V6-V8


Infant 3 Sample 2 Bacterial V6-V8

text: Duke University

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: Infant 3 Sample 2 Bacterial V6-V8


Infant 4 Sample 1 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 4 Sample 1 Bacterial V6-V8


Infant 4 Sample 2 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 4 Sample 2 Bacterial V6-V8


Infant 5 Sample 1 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 5 Sample 1 Bacterial V6-V8


Infant 5 Sample 2 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 5 Sample 2 Bacterial V6-V8


Infant 6 Sample 1 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 6 Sample 1 Bacterial V6-V8


Infant 6 Sample 2 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 6 Sample 2 Bacterial V6-V8


Infant 7 Sample 1 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 7 Sample 1 Bacterial V6-V8


Infant 7 Sample 2 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 7 Sample 2 Bacterial V6-V8


Infant 8 Sample 1 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 8 Sample 1 Bacterial V6-V8


Infant 8 Sample 2 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 8 Sample 2 Bacterial V6-V8


Infant 9 Sample 1 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 9 Sample 1 Bacterial V6-V8


Infant 9 Sample 2 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 9 Sample 2 Bacterial V6-V8


Infant 9 Sample 3 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 9 Sample 3 Bacterial V6-V8


Infant 10 Sample 1 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 10 Sample 1 Bacterial V6-V8


Infant 10 Sample 2 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 10 Sample 2 Bacterial V6-V8


Infant 11 Sample 1 Bacterial V6-V8

text: Duke University

text: live

text: Generic

text: Homo sapiens

text: Infant 11 Sample 1 Bacterial V6-V8


text: Univ of Tenn

text: live

text: Generic

text: wild-type for swimming and swarming

characteristic: genotype/variation

text: Proteus mirabilis

text: BB2000 agar

characteristic: strain


text: Univ of Tenn

text: live

text: Generic

text: wild-type for swimming and swarming

text: Proteus mirabilis

text: BB2000 broth


text: Univ of Tenn

text: live

text: Generic

text: BB2000 fliL::Tn5-Cm

text: Proteus mirabilis

text: BB2204 broth


text: Univ of Tenn

text: live

text: Generic

text: wild-type for swimming and swarming

text: Proteus mirabilis

text: BB2000 broth (control for BB2204 broth)


text: Laboratory for Regenerative Medicine, Department of Surgery, University of Cambridge

text: live

text: Generic

text: H9 hESC

characteristic: cell type

text: Homo sapiens

text: Pluripotent hESC (H9)


text: live

text: Generic

text: H9 hESC

characteristic: chip antibody

text: Santa Cruz Biotechnology Inc

characteristic: chip antibody vendor

text: Homo sapiens

text: Pluripotent hESC (H9)


text: live

text: Generic

text: endoderm progenitor derived from H9 hESC

text: Santa Cruz Biotechnology Inc

text: Homo sapiens

text: Endoderm progenitor


text: 2125 K, Cancer Center, Georgia Health Sciences University

text: live

text: Generic

text: HCT116 colon cancer cell line

characteristic: cell line

text: DNMT wild type

text: Homo sapiens

text: HCT116 colon cancer cell line

text: Colon

characteristic: tissue

text: HCT116 targeted BS-seq

text: tumorgenic

characteristic: tumorgenecity


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNMT1 knockout HCT116 colon cancer cell line

text: Homo sapiens

text: Colon

text: 1KO targeted BS-seq


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNMT3B knockout HCT116 colon cancer cell line

text: Homo sapiens

characteristic: organism

text: Colon

text: 3BKO targeted BS-seq


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: DNMT1, 3B double knockoutHCT116 colon cancer cell line

text: Homo sapiens

text: Colon

text: DKO targeted BS-seq

characteristic: title


text: Molecular Biology, NCMLS Radboud University Nijmegen

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ES-cells

text: Mus musculus

text: Embryonic Stem cells

text: 129 *C3H/PGK


text: live

text: Generic

text: ES-cells

characteristic: cell type

text: Mus musculus

text: Embryonic Stem cells

characteristic: strain


text: live

text: Generic

text: ES-cells

text: RNA Pol II

characteristic: chip antibody

text: Diagenode

characteristic: chip antibody vendor

text: Mus musculus

text: Embryonic Stem cells

text: C57BL/6 * 129


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Staphylococcus aureus subsp. aureus CIG1750

text: 1750 StaphylococcusaureusCIG1750


pH soils

text: University of Waterloo

text: live

text: Generic

text: 16S rRNA gene sequences from pH gradient soils

characteristic: description

text: Bacteria

text: pH gradient soils


text: Indiana University

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: PC3 Input


text: Indiana University

characteristic: INSDC secondary accession

text: live

text: Generic

text: ETV4(Aviva Systems Biology, cat# ARP32263, lot# QC1723)

characteristic: antibody

text: Homo sapiens

text: PC3 ETV4


text: Indiana University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: JUND(Santa Cruz Biotechnology, cat# sc-74, lot# C0310)

text: Homo sapiens

text: PC3 JUND


text: Indiana University

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

text: RWPE1 Input


characteristic: External Id

text: Indiana University

text: live

text: Generic

text: FLAG(Sigma, cat# F1804, lot# 080M6035)

text: Homo sapiens

characteristic: organism

text: RWPE1 FLAG control


text: Indiana University

characteristic: INSDC center name

text: live

text: Generic

text: ETS1(Santa Cruz Biotechnology, cat# sc-350, lot# E1010)

text: Homo sapiens

text: RWPE1 ETS1

characteristic: title


text: Indiana University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: GABPA(Santa Cruz Biotechnology, cat# sc-22810, lot# B2009)

text: Homo sapiens

text: RWPE1 GABPA


text: Indiana University

text: live

text: Generic

text: FLAG(Sigma, cat# F1804, lot# 080M6035)

text: Homo sapiens

text: FLAG-ERG

characteristic: retroviral expression

text: RWPE1 FLAG ERG


text: Indiana University

text: live

text: Generic

text: FLAG(Sigma, cat# F1804, lot# 080M6035)

text: Homo sapiens

text: RWPE1 FLAG ETV1


text: live

text: Generic

text: Staphylococcus aureus subsp. aureus CIG1770

characteristic: strain

text: 1770 StaphylococcusaureusCIG1770


text: live

text: Generic

text: Staphylococcus aureus subsp. aureus CIGC340D

text: C340D StaphylococcusaureusCIGC340D


text: Anhui Agricultural University, Ministry of Education

text: live

text: Generic

text: Camellia sinensis

text: hermaphrodite

characteristic: sex

text: callus

characteristic: tissue-type

text: SSH cDNA library of tea callus (Camellia sinensis) induced by freezing stress

characteristic: vector


biofilm R2

text: Tsinghua Univ

characteristic: INSDC secondary accession

text: live

text: Generic

text: The microbial communities of drinking water biofilms were examined by terminal restriction fragment length polymorphism (T-RFLP) and 454 pyrosequencing of the amplified 16S rRNA gene.

characteristic: description

text: Stichodactyla sp.

text: drinking water biofilm R2


text: Ari Melnick, Hematology/Oncology, WCMC

text: live

characteristic: INSDC status

text: Generic

text: DLBCL cell line OCI-LY1

characteristic: cell line

text: control

characteristic: genotype/variation

text: Homo sapiens

text: Human DLBCL cell line


text: Ari Melnick, Hematology/Oncology, WCMC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DLBCL cell line OCI-LY1

text: siBCL6 mediated knockdown

text: Homo sapiens

text: Human DLBCL cell line

characteristic: time


characteristic: External Id

text: Ari Melnick, Hematology/Oncology, WCMC

characteristic: INSDC center name

text: live

text: Generic

text: DLBCL cell line OCI-LY1

text: siNT mediated knockdown

text: Homo sapiens

characteristic: organism

text: Human DLBCL cell line

characteristic: title


text: Ari Melnick, Hematology/Oncology, WCMC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DLBCL cell line OCI-LY1

text: siNT mediated knockdown

text: Homo sapiens

text: Human DLBCL cell line


text: Martienssen, Delbruck Bldg., Cold Spring Harbor Laboratory

text: live

text: Generic

text: exponential growing culture

characteristic: developmental stage

text: h-, otr1R(SphI)::ura4, ura4-DS/E, ade6-216, his7-366, leu1-32

characteristic: genotype

text: Schizosaccharomyces pombe

text: exponential growing cells

characteristic: strain

text: exponentialculture-wt


characteristic: INSDC secondary accession

text: live

text: Generic

text: exponential growing culture

text: h-, Ddcr1::kanMX6, otr1R(SphI)::ura4, ura4-DS/E, ade6-210, leu1-32, his7-366

text: Schizosaccharomyces pombe

text: exponential growing cells


text: Biosystems Science and Engineering, ETH Zurich

text: live

characteristic: INSDC status

text: Generic

text: DRSC-S2 cell line

characteristic: chip antibody

text: gift from Frank Sauer, Riverside

characteristic: chip antibody supplier

text: Drosophila melanogaster

text: DRSC-S2 cell line


text: live

text: Generic

characteristic: NCBI submission model

text: DRSC-S2 cell line

characteristic: cell line

text: FSH_ID166 [raised against the N-terminal, common part of FSH-S and FSH-L, protein 1.2]

text: gift from Igor Dawid

text: Drosophila melanogaster

text: DRSC-S2 cell line


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DRSC-S2 cell line

text: FSH_ID173 [raised against protein 4.1 (recognizes FSH-L only)]

text: gift from Igor Dawid

text: Drosophila melanogaster

text: DRSC-S2 cell line


characteristic: External Id

text: Biological Chemistry, University of California Los Angeles

text: live

text: Generic

text: Jurkat

text: HIV Tat protein

characteristic: expression

text: Homo sapiens

text: Jurkat-Tat T cells

text: input DNA


characteristic: INSDC center name

text: live

text: Generic

text: Jurkat

text: Tat

text: Abcam

characteristic: chip antibody manufacturer

text: HIV Tat protein

text: Homo sapiens

characteristic: organism

text: Jurkat-Tat T cells

text: Tat ChIP-seq


text: Biochmemistry and Mol. Genetics, U. Colorado School of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: genotype/variation

text: cells were grown in SC 2%raffinose+galactose to O.D. ~ 0.2 at 25º then shifted to SC 2% glucose for 8 hr

characteristic: growth conditions

text: Saccharomyces cerevisiae

text: yeast poly A+ mRNA

text: 3' RNA-seq Watson strand WT cells_and_3' RNA-seq Crick strand WT cells

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: DBY1272-2 (GAL1-YRA1 W303 background)

text: Saccharomyces cerevisiae

text: yeast poly A+ mRNA

text: 3' RNA-seq Watson strand Yra1-depleted cells_and_3' RNA-seq Crick strand Yra1-depleted cells


text: HSB C526, Pathology, University of Washington

text: live

text: Generic

text: PGK12.1 ES

text: female

characteristic: gender

text: Mus musculus

characteristic: passages

text: PGK12.1 ES cells

text: Derived from blastcysts from a 129 female crossed to a (129 X PGK)F1 male.

characteristic: strain


text: Center for Research in Agricultural Genomics (CRAG)

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 15-days old plants

characteristic: age

text: Nipponbare

characteristic: cultivar

text: Oryza sativa Japonica Group

text: Control Leaves

text: Endogenous small RNAs from rice, control LEAVES (30')


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: 15-days old plants

text: Nipponbare

text: Oryza sativa Japonica Group

text: Elicitor Leaves

text: Endogenous small RNAs from rice, elicitor-treated LEAVES (30')


characteristic: INSDC first public

text: live

text: Generic

text: 15-days old plants

text: Nipponbare

text: Oryza sativa Japonica Group

characteristic: organism

text: Control Leaves

text: Endogenous small RNAs from rice, control LEAVES (2h)


characteristic: INSDC last update

text: live

text: Generic

text: 15-days old plants

text: Nipponbare

text: Oryza sativa Japonica Group

text: Elicitor Leaves

text: Endogenous small RNAs from rice, elicitor-treated LEAVES (2h)


text: live

text: Generic

text: 15-days old plants

text: Nipponbare

text: Oryza sativa Japonica Group

text: Control Roots

text: Endogenous small RNAs from rice, control ROOTS (30')


text: live

text: Generic

text: 15-days old plants

text: Nipponbare

text: Oryza sativa Japonica Group

text: Elicitor Roots

text: Endogenous small RNAs from rice, elicitor-treated ROOTS (30')


text: live

text: Generic

text: 15-days old plants

text: Nipponbare

text: Oryza sativa Japonica Group

text: Control Roots

text: Endogenous small RNAs from rice, control ROOTS (2h)


text: live

text: Generic

text: 15-days old plants

text: Nipponbare

text: Oryza sativa Japonica Group

text: Elicitor Roots

text: Endogenous small RNAs from rice, elicitor-treated ROOTS (2h)


text: Genomics Research Center, Academia Sinica

text: live

text: Generic

characteristic: cell line

text: Embryonic stem cells

characteristic: developmental stage

text: Homo sapiens

text: Embryonic stem cells

text: h9ESC long 1


characteristic: INSDC secondary accession

text: live

text: Generic

text: Embryonic stem cells

text: Homo sapiens

text: Embryonic stem cells

text: h9ESC long 2

characteristic: title


text: live

characteristic: INSDC status

text: Generic

text: Embryonic stem cells

text: Homo sapiens

text: Embryonic stem cells

text: h9ESC short 1


text: Ari Melnick, Hematology/Oncology, WCMC

text: live

text: Generic

text: BCL6 (N3-antibody)

characteristic: chip antibody

text: Homo sapiens

text: Human DLBCL cell line


text: Ari Melnick, Hematology/Oncology, WCMC

text: live

text: Generic

text: none (INPUT)

text: Homo sapiens

text: Human DLBCL cell line


text: Ari Melnick, Hematology/Oncology, WCMC

text: live

text: Generic

text: SMRT

text: Homo sapiens

text: Human DLBCL cell line


text: Ari Melnick, Hematology/Oncology, WCMC

text: live

text: Generic

text: Ser2-P RNA pol II

text: Homo sapiens

text: Human DLBCL cell line


text: Ari Melnick, Hematology/Oncology, WCMC

text: live

text: Generic

text: Ser5-P RNA pol II

text: Homo sapiens

text: Human DLBCL cell line


3 HCMV Urine Populations

text: University of Massachusetts Medical School

text: live

text: Generic

text: Genome wide sequencing of 3 populations of HCMV sampled from the urine of congenitally infected neonates

characteristic: description

text: Human betaherpesvirus 5

text: Extensive Genome-wide Variability of Human Cytomegalovirus in Congenitally Infected Infants


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

characteristic: NCBI submission model

text: Mycobacteroides abscessus subsp. bolletii 1S-154-0310

characteristic: strain

text: 1S-154-0310 1S-154-0310


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

text: Coriell

characteristic: biomaterial provider

characteristic: biorep

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

characteristic: labexpid

text: iIDR

characteristic: labversion

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description

characteristic: spikeinpool

text: CSHL_RnaSeq_GM12878_nucleus_longPolyA (superseded by GSE90233)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: ATCC

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

text: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA

characteristic: localization description

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: CSHL_RnaSeq_K562_nucleus_longPolyA (superseded by GSE90236)

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

characteristic: biorep

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

characteristic: labexpid

text: iIDR

characteristic: labversion

characteristic: line

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: CSHL_RnaSeq_MCF-7_cell_longPolyA (superseded by GSE90237)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Lonza

text: lung fibroblasts

text: normal

characteristic: cell karyotype

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description

text: NHLF

characteristic: spikeinpool

text: CSHL_RnaSeq_NHLF_cell_longNonPolyA (superseded by GSE78598)


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

characteristic: labexpid

text: iIDR

characteristic: labversion

text: That part of the nuclear content other than the chromosomes or the nucleolus

characteristic: localization description

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 3

text: total

text: Total RNA extract (longer than 200 nt)

text: CSHL_RnaSeq_K562_nucleoplasm_total (superseded by GSE90240)

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Refer to the protocol documents for differing sources

text: skeletal muscle myoblasts

characteristic: cell description

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: HSMM

text: CSHL_RnaSeq_HSMM_cell_longNonPolyA (superseded by GSE78597)


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

text: iIDR

text: Nuclear DNA and associated proteins

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 3

characteristic: replicate description

text: total

characteristic: rnaextract

text: Total RNA extract (longer than 200 nt)

characteristic: rnaextract description

characteristic: spikeinpool

text: CSHL_RnaSeq_K562_chromatin_total (superseded by GSE90238)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

text: RnaSeq

text: Sequencing analysis of RNA expression

characteristic: datatype description

characteristic: labexpid

text: iIDR

characteristic: labversion

text: The part of the nucleus where ribosomal RNA is actively transcribed

characteristic: localization description

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 3

text: total

text: Total RNA extract (longer than 200 nt)

text: CSHL_RnaSeq_K562_nucleolus_total (superseded by GSE90239)

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

characteristic: biorep

text: lung fibroblasts

characteristic: cell description

text: normal

characteristic: cell karyotype

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: NHLF

text: CSHL_RnaSeq_NHLF_cell_longPolyA (superseded by GSE78595)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

text: neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: iIDR

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description

characteristic: spikeinpool

text: CSHL_RnaSeq_SK-N-SH_RA_cell_longPolyA (superseded by GSE90232)


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Coriell

characteristic: biomaterial provider

text: RnaSeq

text: Sequencing analysis of RNA expression

characteristic: labexpid

text: iIDR

characteristic: labversion

text: Whole cell

characteristic: localization description

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: CSHL_RnaSeq_AG04450_cell_longNonPolyA (superseded by GSE78599)

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Lonza

characteristic: biorep

text: mammary epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: iIDR

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: HMEC

text: CSHL_RnaSeq_HMEC_cell_longNonPolyA (superseded by GSE78596)


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

text: F

characteristic: cell sex

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description

text: NHEK

characteristic: spikeinpool

text: CSHL_RnaSeq_NHEK_cell_longNonPolyA (superseded by GSE78591)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Lonza

characteristic: biorep

text: F

text: RnaSeq

text: Sequencing analysis of RNA expression

characteristic: labexpid

text: iIDR

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 3

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: NHEK

text: CSHL_RnaSeq_NHEK_nucleus_longPolyA (superseded by GSE78592)

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

text: F

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: iIDR

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

text: tier 3

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: NHEK

text: CSHL_RnaSeq_NHEK_cytosol_longPolyA (superseded by GSE78593)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Lonza

characteristic: biomaterial provider

text: F

characteristic: cell sex

text: RnaSeq

text: Sequencing analysis of RNA expression

text: LID8694,LID16631,LID16631,LID16632,LID16632

text: iIDR

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description

text: NHEK

characteristic: spikeinpool

text: CSHL_RnaSeq_NHEK_cell_longPolyA (superseded by GSE78594)


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

characteristic: biorep

text: ectoderm

characteristic: cell lineage

text: RnaSeq

text: Sequencing analysis of RNA expression

characteristic: labexpid

text: iIDR

characteristic: labversion

characteristic: line

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: CSHL_RnaSeq_HeLa-S3_cell_longPolyA (superseded by GSE86661)

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: ectoderm

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: iIDR

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: CSHL_RnaSeq_HeLa-S3_nucleus_longPolyA (superseded by GSE90235)


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ATCC

characteristic: biorep

text: ectoderm

characteristic: cell lineage

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description

characteristic: spikeinpool

text: CSHL_RnaSeq_HeLa-S3_cytosol_longPolyA (superseded by GSE90234)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: RnaSeq

text: Sequencing analysis of RNA expression

characteristic: labexpid

text: iIDR

characteristic: labversion

characteristic: line

text: Whole cell

characteristic: localization description

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: CSHL_RnaSeq_K562_cell_longPolyA (superseded by GSE86660)

characteristic: title


text: Universidade Estadual de Campinas

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: workers and soldiers

characteristic: dev-stage

text: Velocitermes heteropterus

text: whole body

characteristic: tissue-type

text: Velocitermes heteropterus nest01


name: the midgut transcriptome analysis of Nilaparvata lugens

characteristic: External Id

text: College of Life Sciences, Wuhan University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Three to four-instar nymphs of N. lugens were collected . Before dissection, the insects were chilled on ice and placed in a petri dish that had been brushed with insect physiological buffer (0.65% NaCl water solution). The dissected midguts were immediately placed in TRIzol reagent (Invitrogen). Three hundred midguts were collected for total RNA extraction. The N. lugens population was reared on TN1 rice plants, which is susceptible to N. lugens, in the greenhouse at the Genetics Institute, Wuhan University.

characteristic: description

text: Nilaparvata lugens

text: the midgut of Nilaparvata lugens


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mycobacteroides abscessus subsp. bolletii 2B-0307

characteristic: strain

text: 2B-0307 2B-0307


text: live

text: Generic

characteristic: SRA accession

text: Mycobacteroides abscessus subsp. bolletii 2B-0626

text: 2B-0626 2B-0626


text: live

text: Generic

text: Mycobacteroides abscessus subsp. bolletii 2B-0912-R

text: 2B-0912-R 2B-0912-R


text: live

text: Generic

text: Mycobacteroides abscessus subsp. bolletii 2B-1231

text: 2B-1231 2B-1231


name: Alternative splicing and trans-splicing events in Bombyx mori

text: Institute of Plant Physiology and Ecology

text: live

text: Generic

text: To gain a global view of the silkworm transcriptome, we collected 77 samples from the whole life cycle of B. mori, including 18 from embryo, 29 from larva, 26 from pupa and 4 from adult, in which female and male were equally considered. Total RNA from each sample were equally mixed together and the ribosomal RNAs were removed by Ribominus method, then the RNA sample was applied to Illumina Genome Analyser 2 for sequencing.

text: Bombyx mori

text: Alternative splicing and trans-splicing events revealed by analysis of Bombyx mori transcriptome


text: live

text: Generic

text: Mycobacteroides abscessus subsp. bolletii 1S-151-0930

text: bolletii

characteristic: sub species

text: 1S-151-0930 1S-151-0930


text: live

text: Generic

text: Mycobacteroides abscessus subsp. bolletii 1S-152-0914

text: 1S-152-0914 1S-152-0914


text: live

text: Generic

text: Mycobacteroides abscessus 3A-0122-S

text: 3A-0122-S 3A-0122-S


text: live

text: Generic

text: Mycobacteroides abscessus 3A-0731

text: 3A-0731 3A-0731


text: live

text: Generic

text: Mycobacteroides abscessus 3A-0810-R

text: 3A-0810-R 3A-0810-R


text: live

text: Generic

text: Mycobacteroides abscessus 3A-0930-S

text: 3A-0930-S 3A-0930-S


text: live

text: Generic

text: Mycobacteroides abscessus 5S-0422

text: 5S-0422 5S-0422


text: live

text: Generic

text: Mycobacteroides abscessus 5S-0817

text: 5S-0817 5S-0817


text: live

text: Generic

text: Mycobacteroides abscessus 6G-0125-R

text: 6G-0125-R 6G-0125-R


text: live

text: Generic

text: Mycobacteroides abscessus 5S-1212

text: 5S-1212 5S-1212


text: live

text: Generic

text: Mycobacteroides abscessus 6G-0212

text: 6G-0212 6G-0212


text: live

text: Generic

text: Mycobacteroides abscessus 5S-1215

text: 5S-1215 5S-1215


text: live

text: Generic

text: Mycobacteroides abscessus 6G-0125-S

text: 6G-0125-S 6G-0125-S


text: live

text: Generic

text: Mycobacteroides abscessus 5S-0921

text: 5S-0921 5S-0921


text: live

text: Generic

text: Mycobacteroides abscessus 6G-0728-S

text: 6G-0728-S 6G-0728-S


text: live

text: Generic

text: Mycobacteroides abscessus 6G-1108

text: 6G-1108 6G-1108


name: Transcriptome Analysis of Bactrocera dorsalis

text: College of Plant Protection southwest university

text: live

text: Generic

text: Bactrocera dorsalis

text: Transcriptome Analysis of the Oriental Fruit Fly (Bactrocera dorsalis)


Adjacent normal liver RNA-Seq

text: National YangMing University

text: live

text: Generic

text: Adjacent Normal Liver

text: Homo sapiens

text: RNA-Seq data of adjacent normal liver from GAII


Tumor liver RNA-Seq

text: National YangMing University

text: live

text: Generic

text: Homo sapiens

text: Tumor liver RNA-Seq


text: Brigham Young University DNA Sequencing Center -Udall Lab

text: live

text: Generic

text: Quinoa (Chenopodium quinoa Willd.) is a staple food crop for millions of impoverished subsistence farmers of Andean South America where it has been cultivated for millennia. Quinoa’s nutritional quality is exceptional. The seeds have an excellent balance of carbohydrates, lipids, and proteins for human nutrition. Because of quinoa’s nutritional qualities, its natural adaptation to harsh conditions, and its cultural acceptability, increased quinoa production is the single most important prospect for addressing problems of food security in Andean South America. Here we report the first large scale sequencing (454-pyrosequencing and Sanger sequencing) and annotation of the quinoa transcriptome, including deep sequencing of eight development stages of the seed transcriptome, as well as the root, leaf and flower transcriptomes collected from plants grown under differing salinity concentrations. De novo assembly of the reads resulted in 63,151 contig consensus sequences with an average read length of 530 bp. Significant BLASTx alignments with the non-redundant protein database were identified 26,302 (42%) of the consensus contig sequences (≤1e-15). A total of 806 and 218 putative microsatellite and single nucleotide polymorphism (SNPs) loci were detected. The utility of the EST library was shown via targeted BLASTX searches for genes known to be involved in salinity stress tolerance and the biosynthetic pathway for saponin production, an antinutritional triterpenoid component found of the seed coat of bitter quinoa varieties.

text: Chenopodium quinoa

text: ESTs of Chenopodium quinoa from seed, salt-stressed, and non-stressed tissues


text: O'Neill, Molecular and Cell Biology, University of Connecticut

text: live

text: Generic

text: 125 days

characteristic: age

text: pouch young cells

characteristic: cell type

text: CENP-A

characteristic: chip antibody

characteristic: chip antibody lot numer

text: BSYN 5968

characteristic: chip antibody rabbit number

text: N/A (Custom antibody)

characteristic: chip antibody vendor

text: Notamacropus eugenii


text: UCHSC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: rabbit antibody (homemade) against peptide NH2-ATGGVKme3KPHRYC-COOH (rabbits immunized with peptide coupled to KLH)

text: DMEM 10% FCS, methanol solvent control 1/5000

characteristic: growth protocol

text: Homo sapiens

characteristic: organism

text: Hela

text: H3K36me3 ChIP-seq

characteristic: title


characteristic: External Id

text: UCHSC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: DMEM 10% FCS, 20ng/ml spliceostatin A for 12hr

text: Homo sapiens

text: Hela

text: H3K36me3 ChIP-seq in SSA treated cells


text: UCHSC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit anti pan CTD (Schroeder et al. Genes Dev. 14:2435, 2000)

text: DMEM 10% FCS, no methanol

text: Homo sapiens

text: Hela

text: RNA pol II ChIP-seq in control cells


text: UCHSC

text: live

text: Generic

text: Homo sapiens

text: Hela

text: RNA pol II ChIP-seq in SSA treated cells


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300

characteristic: strain

text: CCUG 48898 CCUG48898


text: HHMI/UCSD

text: live

text: Generic

characteristic: antibody

characteristic: cell type

text: Homo sapiens

text: Ntera2 cells

text: no retinoic acid

characteristic: treatment

text: Abcam (Cat. # ab9050)

characteristic: vendor


text: HHMI/UCSD

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: Ntera2 cells

text: with retinoic acid

text: Abcam (Cat. # ab9050)


text: Shaun Mahony, Biochemistry & Molecular Biology, Penn State University

characteristic: INSDC last update

text: live

text: Generic

text: Ainv15 (ATCC SCRC-1029) with inducible V5-tagged Olig2

characteristic: cell line

text: progenitor motor neurons (Day4 directed differentiation)

characteristic: cell stage

text: Olig2 (Millipore, ab9610)

characteristic: chip antibody

text: Mus musculus

text: Chromatin IP against Olig2

text: ChIP-seq analysis of Olig2 using native antibody in progenitor motor neurons (Day 4)


text: live

characteristic: INSDC status

text: Generic

text: anti-V5 (Abcam, ab15828)

text: Mus musculus

characteristic: organism

text: Chromatin IP against V5

text: ChIP-seq analysis of inducible V5-tagged Olig2 (iOlig2-V5) in progenitor motor neurons (Day 4)

characteristic: title

text: +Dox


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: Ainv15 (ATCC SCRC-1029) with inducible V5-tagged Hoxc9

text: progenitor motor neurons (Day5 directed differentiation)

text: anti-V5 (Abcam, ab15828)

text: Mus musculus

text: Chromatin IP against V5

text: ChIP-seq analysis of inducible V5-tagged Hoxc9 (iHoxc9-V5) in progenitor motor neurons (Day 5)

text: +Dox


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Ainv15 (ATCC SCRC-1029) with inducible Flag-tagged Hoxc9

text: anti-Flag (Sigma, F1804-200UG)

text: Mus musculus

text: Chromatin IP against Flag

text: ChIP-seq analysis of inducible Flag-tagged Hoxc9 (iFlag-Hoxc9) in progenitor motor neurons (Day 5)

text: +Dox


text: live

text: Generic

text: anti-V5 (Abcam, ab15828)

text: Mus musculus

text: Pseudo IP against V5

text: Pseudo-ChIP control using anti-V5 in progenitor motor neurons (Day 4)


text: Weissman, Cellular and Molecular Pharmacology, UCSF

text: live

text: Generic

characteristic: genetic background

text: Mus musculus

text: embryoid body

text: embryoid body 8d in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) mrna_eb Illumina GAII


text: live

text: Generic

text: Mus musculus

text: embryoid body

text: embryoid body 8d in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) mrna_eb Illumina HiSeq

characteristic: treatment


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell 36 hours in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) mrna_mesc_nolif Illumina GAII


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell 36 hours in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) mrna_mesc_nolif Illumina HiSeq


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell feeder-free, w/ LIF 60 s CYH (100 ug/ml) mrna_mesc_yeslif Illumina GAII


text: live

text: Generic

text: Mus musculus

text: embryoid body

text: embryoid body 8d in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) ribo_eb Illumina GAII


text: live

text: Generic

text: Mus musculus

text: embryoid body

text: embryoid body 8d in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) ribo_eb Illumina HiSeq


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell feeder-free, w/ LIF 60 s CYH (100 ug/ml) ribo_mesc_chx Illumina GAII


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell feeder-free, w/ LIF 60 s emetine ribo_mesc_emet Illumina GAII

text: ES cell feeder-free, w/ LIF 120 s HRT (1 ug/ml) then 60 s CYH (100 ug/ml)


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell feeder-free, w/ LIF 120 s HRT (1 ug/ml) then 60 s CYH (100 ug/ml) ribo_mesc_harr120s Illumina GAII


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell feeder-free, w/ LIF 150 s HRT (1 ug/ml) then 60 s CYH (100 ug/ml) ribo_mesc_harr150s Illumina GAII


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell feeder-free, w/ LIF 180 s HRT (0.5 ug/ml) then 60 s CYH (100 ug/ml) ribo_mesc_harr180s Illumina GAII


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell feeder-free, w/ LIF 90 s HRT (1 ug/ml) then 60 s CYH (100 ug/ul) ribo_mesc_harr90s Illumina GAII


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell feeder-free, w/ LIF none ribo_mesc_nochx Illumina GAII

text: ES cell feeder-free, w/ LIF


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell 36 hours in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) ribo_mesc_nolif Illumina GAII


text: Weissman, Cellular and Molecular Pharmacology, UCSF

text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell 36 hours in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) ribo_mesc_nolif Illumina HiSeq


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell feeder-free, w/ LIF 60 s CYH (100 ug/ml) ribo_mesc_yeslif Illumina GAII


text: live

text: Generic

text: Mus musculus

text: ES cell

text: ES cell feeder-free, w/ LIF 60 s CYH (100 ug/ml) ribo_mesc_yeslif Illumina HiSeq


text: Cornelis Murre, Division of Biological Sciences, UCSD

text: live

text: Generic

text: Millipore

characteristic: antibody vendor

text: multipotent hematopoietic stem cells (HPCs)

characteristic: cell type

text: human ID2 transgenic

characteristic: genotype

text: uninduced

characteristic: hpc induction

text: Mus musculus

text: Uninduced Id2-HPC cells, 0h, H3K4me3 ChIP


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Millipore

text: Cd19+ B cells

text: human ID2 transgenic

text: B-cell conditions

text: 120 hrs

characteristic: induction duration

text: Mus musculus

text: Id2-HPC cells induced under B-cell conditions, Cd19+, 120h, H3K4me3 ChIP


text: live

characteristic: INSDC status

text: Generic

text: Millipore

text: myeloid cells

characteristic: chip antibody

text: human ID2 transgenic

text: myeloid conditions

text: Mus musculus

characteristic: organism

text: Id2-HPC cells induced under myeloid conditions, H3K4me3 ChIP


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Abcam

text: human ID2 transgenic

text: uninduced

text: Mus musculus

text: Uninduced Id2-HPC cells, 0h, H3K4me1 ChIP

text: ID2-H3K4me1-0h, biological replicate 1

characteristic: title


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Abcam

text: B cells

text: human ID2 transgenic

text: B-cell conditions

text: 48 hrs

text: Mus musculus

text: Id2-HPC cells induced under B-cell conditions, 48h, H3K4me1 ChIP

text: ID2-H3K4me1-48h, biological replicate 1


text: live

text: Generic

characteristic: SRA accession

text: Abcam

text: Cd19+ B cells

characteristic: genetic background

text: human ID2 transgenic

text: B-cell conditions

text: 120 hrs

text: Mus musculus

text: Id2-HPC cells induced under B-cell conditions, Cd19+, 120h, H3K4me1 ChIP

text: ID2-H3K4me1-120h, biological replicate 1


text: live

text: Generic

text: Abcam

characteristic: antibody vendor

characteristic: cell type

text: human ID2 transgenic

text: uninduced

text: Mus musculus

text: ID2-H3K4me1-0h.new, biological replicate 2


text: live

text: Generic

text: Abcam

text: B cells

text: human ID2 transgenic

characteristic: genotype

text: B-cell conditions

characteristic: hpc induction

text: 48 hrs

text: Mus musculus

text: ID2-H3K4me1-48h.new, biological replicate 2


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Abcam

text: Cd19+ B cells

text: human ID2 transgenic

text: B-cell conditions

text: 120 hrs

text: Mus musculus

text: ID2-H3K4me1-120h.new, biological replicate 2


text: live

characteristic: INSDC status

text: Generic

text: Abcam

text: myeloid cells

text: human ID2 transgenic

text: myeloid conditions

text: Mus musculus

text: Id2-HPC cells induced under myeloid conditions, H3K4me1 ChIP

text: ID2-H3K4me1-Myeloid, biological replicate 1


text: live

text: Generic

text: Abcam

text: myeloid cells

characteristic: chip antibody

text: human ID2 transgenic

text: myeloid conditions

text: Mus musculus

text: ID2-H3K4me1-Myeloid.new, biological replicate 2


text: live

text: Generic

text: human ID2 transgenic

text: uninduced

text: Mus musculus

characteristic: organism

text: Uninduced Id2-HPC cells, input

text: ID2-HPC Input


characteristic: External Id

text: GenXPro-GmbH

text: live

text: Generic

text: monocytes

characteristic: cell type subset

text: healthy

characteristic: health status

text: Homo sapiens

text: isolated monocyte subset


text: HVB, Genetics & Genomic Sciences, Mount Sinai Hospital

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

text: H1299 Cell line

text: Lung carcinoma

characteristic: tissue

characteristic: title

text: Immortalized

characteristic: tumor stage


text: Genome Technology & Biology, Genome Institute of Singapore

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

text: mononuclear blood cells

text: blood

text: Genomic DNA of gastric cancer patient NGCII082 blood_SOLiDv2

text: non affected tissue

characteristic: tumor type


characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: gastric adenocarcinoma of a patient with active H. pylori infection, chronic gastritis, microsatellite instability

text: tumour

text: Genomic DNA of gastric cancer patient NGCII082 tumour_SOLiDv2

text: stage 3b, intestinal Lauren classification, moderately differentiated and of tubular subtype


characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: mononuclear blood cells

text: blood

text: Genomic DNA of gastric cancer patient NGCII092 blood_SOLiDv2

text: non affected tissue


text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: gastric adenocarcinoma of a patient without active H. pylori infection and microsatellite instability but with intestinal metaplasia

text: tumour

text: Genomic DNA of gastric cancer patient NGCII092 tumour_SOLiDv2

text: stage 1b, intestinal Lauren classification, moderately differentiated and of tubular subtype


text: College of Horticulture, Nanjing Agricultural University

text: live

text: Generic

text: Torvum Vigor

characteristic: cultivar

text: Leaves were collected at 3, 6, 9, 12, 15, 18, 21, 24, 27, 30, 33, 36 days after three true leaves seedling. We constructed and characterized a full-length cDNA library of wild eggplant leaves by using the SMART cDNA library construction kit (Clontech Laboratories Inc, Mountain View, CA, USA).

characteristic: description

text: Seedlings from three true leaves to ten true leaves

characteristic: dev-stage

text: Escherichia coli DH10B

characteristic: lab-host

text: Solanum torvum

text: hermaphrodite

characteristic: sex

text: Mixture of leaves

characteristic: tissue-type

text: library StFL

text: Phagemid

text: pBluescript II SK(+)

characteristic: vector


characteristic: External Id

text: China Agricultural University

characteristic: INSDC center name

text: live

text: Generic

text: adult

text: liver and breast muscle

characteristic: organ

text: Gallus gallus

characteristic: organism

text: Female

text: Silkie Fowl

characteristic: strain

text: liver and breast muscle

text: Chicken liver and breast muscle cDNA libraries


text: University of Shahid Beheshti, G. C.

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Catharanthus roseus

text: Catharanthus roseus beta tubulin gene library

characteristic: title


text: Kunming University of Science and Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Yunnan Candou 8363

text: Identification of Aluminum response genes in faba bean by suppression subtractive hybridization analysis

text: 15-day-old seedlings roots exposed to Al stress (50 uM) for 30min, 2h, 4h, 8h, 12h and 24h, respectively.

text: E.coli DH5alpha

text: root

text: Vicia faba

text: root

text: The suppression subtractive hybridization library for faba bean under aluminum (Al) stress

text: pGEM-T Easy Vector


text: Nanhua University

text: live

characteristic: INSDC status

text: Generic

text: Human gastric cancer cell-line MGC803

characteristic: cell-line

text: PCR based suppression subtractive hybridization was carried out using the cDNA populations derived from the DADS-treated and untreated MGC803 cells taken as 'tester' and 'driver', respectively.

text: old-aged

text: Homo sapiens

text: male

text: gastric poor-differential adenocarcinoma

text: The cDNA library of down-regulated genes group induced by DADS in the MGC803 cells

text: pGEM-T


text: Nanhua University

text: live

text: Generic

text: Human gastric cancer cell-line MGC803

characteristic: description

text: old-aged

characteristic: dev-stage

text: Homo sapiens

text: male

text: The cDNA library of up-regulated genes group induced by DADS in the MGC803 cells

text: pGEM-T


text: Swami Keshwanad Rajasthan Agricultural University

text: live

text: Generic

characteristic: cultivar

text: An EST library of early heat induced genes was generated from nontreated and treated leaves of moth bean (Vigna aconitifolia) variety RMO-40. 15 day old seedlings were grown in-vitro on filter paper bridge in test tubes containing 1/4 MS media at 27 deg C with a 12/12 h light/dark photoperiod. These seedlings were subjected to elevated temperature of 42 deg C for 5 min in order to induce mainly signalling genes. The leaves of treated and control plants were harvested to extract mRNA and suppression subtraction hybridization was conducted taking treated cDNA as tester and control's as driver. SSH products were cloned using pJET1.2 (Fermentas) as clonning vector. This work was conducted under the National Agricultural Innovative Project (NAIP), entitled bioprospecting of genes and allele mining for abiotic stress tolerance.

text: 15 days old seedling

text: Vigna aconitifolia

text: leaves

text: SSH Library of early (5min) heat induced ESTs of Vigna aconitifolia variety RMO-40

text: Plasmid

text: pJET1.2/blunt clonning vector


text: College of Horticulture, Northwest A&F University

text: live

text: Generic

text: E.coli DH5alpha

characteristic: lab-host

text: Vitis quinquangularis

text: young leaves

characteristic: tissue-type

text: Chinese wild Vitis quinquangularis inoculated with powdery mildew supression substractive hybridization cDNA library

text: pGEM-T Easy Vector


characteristic: External Id

text: Bose Institute

text: live

text: Generic

text: Bangalore Dwarf

text: Matured leaves

text: Carica papaya

text: Carica papaya Bangalore Dwarf mature leaf library


text: Bose Institute

characteristic: INSDC center name

text: live

text: Generic

text: Matured leaves

text: Carica papaya

text: Carica papaya CO6 mature leaf library


name: S20DRSC cell like monophosphate small RNA

text: Berkeley Drosophila Genome Project

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Drosophila melanogaster

text: D. melanogaster S2-DRSC cell line small 5' monophosphate RNA (less than 200nt)


name: Kc167 cell line 5' monophosphate small RNA

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

characteristic: organism

text: D. melanogaster Kc167 cell line small 5' monophosphate RNA (less than 200nt)


name: BG3C2 cell line 5' monophosphate small RNA

text: Berkeley Drosophila Genome Project

text: live

text: Generic

characteristic: NCBI submission model

text: Drosophila melanogaster

text: D. melanogaster BG3C2 cell line small 5' monophosphate RNA (less than 200nt)


name: cl.8 cell line 5' monophosphate small RNA

text: Berkeley Drosophila Genome Project

text: live

text: Generic

characteristic: NCBI submission package

text: Drosophila melanogaster

text: D. melanogaster Cl.8 cell line small 5' monophosphate RNA (less than 200nt)


Cascades Stream, NZ

text: Lincoln University

text: live

text: Generic

text: uncultured bacterium

text: Cascades Stream, NZ

characteristic: title


Lucas Creek, NZ

text: Lincoln University

characteristic: INSDC first public

text: live

text: Generic

text: uncultured bacterium

text: Lucas Creek, NZ


Oakley Creek, NZ

text: Lincoln University

characteristic: INSDC last update

text: live

text: Generic

text: uncultured bacterium

text: Oakley Creek, Nz


Otara Stream at Kennel Hill, NZ

text: Lincoln University

text: live

characteristic: INSDC status

text: Generic

text: uncultured bacterium

text: Otara Stream at Kennel Hill, NZ


Puhinui Stream, NZ

text: Lincoln University

text: live

text: Generic

text: uncultured bacterium

text: Puhinui Stream, NZ


Riverhead Stream, NZ

text: Lincoln University

text: live

text: Generic

text: uncultured bacterium

text: Riverhead Stream, NZ


Opanuku Stream, NZ

text: Lincoln University

text: live

text: Generic

text: uncultured bacterium

text: Opanuku Stream, NZ


Mahurangi River at FHQ, NZ

text: Lincoln University

text: live

text: Generic

text: uncultured bacterium

text: Mahurangi River at FHQ, NZ


Hoteo River, NZ

text: Lincoln University

text: live

text: Generic

text: uncultured bacterium

text: Hoteo River, NZ


Makarau River, NZ

text: Lincoln University

text: live

text: Generic

text: uncultured bacterium

text: Makarau River, NZ


Matakana Stream, NZ

text: Lincoln University

text: live

text: Generic

text: uncultured bacterium

text: Matakana Stream, NZ


Rangitopuni River, NZ

text: Lincoln University

text: live

text: Generic

text: uncultured bacterium

text: Rangitopuni River, NZ


name: Caenorhabditis elegans N2 early embryo EE_50-60 RNA library

text: University of Washington Genome Sciences

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-60 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 60 minutes. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-60 Local library name: N2_EE_50-60 Quality values are ASCII encoded Phred + 33. Flowcell 62UHPAAXX was processed with GAPipeline1.8 and is 76bp. Flowcell B007UABXX was processed with GAPipeline1.7 and is 100bp.

text: Caenorhabditis elegans


text: MPIPZ

text: live

text: Generic

text: Unplanted soil bacterial community

text: uncultured bacterium

text: unplanted soil


text: Genome Technology & Biology, Genome Institute of Singapore

text: live

text: Generic

text: Homo sapiens

text: mononuclear blood cells

text: blood

characteristic: tissue

text: Genomic DNA of gastric cancer patient NGCII082 blood_IlluminaGAII

text: non affected tissue

characteristic: tumor type


text: live

text: Generic

text: Homo sapiens

text: gastric adenocarcinoma of a patient with active H. pylori infection, chronic gastritis, microsatellite instability

text: tumour

text: Genomic DNA of gastric cancer patient NGCII082 tumour_IlluminaGAII

text: stage 3b, intestinal Lauren classification, moderately differentiated and of tubular subtype


text: live

text: Generic

text: Homo sapiens

text: mononuclear blood cells

text: blood

text: Genomic DNA of gastric cancer patient NGCII092 blood_IlluminaGAII

text: non affected tissue


text: live

text: Generic

text: Homo sapiens

text: gastric adenocarcinoma of a patient without active H. pylori infection and microsatellite instability but with intestinal metaplasia

text: tumour

text: Genomic DNA of gastric cancer patient NGCII092 tumour_IlluminaGAII

text: stage 1b, intestinal Lauren classification, moderately differentiated and of tubular subtype


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: batch

text: James Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cells received from the James Thomson laboratory. Cells are from the H1 line and are differentiated into mesenchymal stem cells.

characteristic: description

text: Publication in progress

characteristic: differentiation method

text: Embryonic stem cell differentiated into mesenchymal stem cells

characteristic: differentiation stage

characteristic: line

text: Embryonic Stem Cell

characteristic: lineage

text: Publication in progress

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: James Thomson Laboratory

text: Cell Line

text: Human embryonic stem cells received from the James Thomson laboratory. Cells are from the H1 line and are differentiated into neural progenitor cells.

text: Publication in progress

text: Embryonic stem cell differentiated into neural progenitor cells

text: Embryonic Stem Cell

text: Publication in progress

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Between 20 and 30

text: male

text: Generic sample from Homo sapiens

characteristic: title


Clam

text: University of Washington

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Mercenaria mercenaria

text: Comparing gill transcriptome of two strains of hard clam


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Mapping of 3prime ends of native genomes of vector AAV2F9 based on adeno-associated virus using single-molecule sequencing

characteristic: description

text: Adeno-associated virus

text: Generic sample from Adeno-associated virus


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Mapping of 5prime ends of native genomes of vector AAV2F9 based on adeno-associated virus using single-molecule sequencing

text: Adeno-associated virus


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Mapping of 3prime ends of native genomes of vector AAV8F8 based on adeno-associated virus using single-molecule sequencing

text: Adeno-associated virus


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Mapping of 5prime ends of native genomes of vector AAV8F8 based on adeno-associated virus using single-molecule sequencing

text: Adeno-associated virus


text: Human Genetics, University of Chicago

text: live

text: Generic

text: 2 months

characteristic: age

text: Mus musculus

text: normal adult heart

text: mixed 129/Black Swiss outbred background

characteristic: strain

text: whole heart

characteristic: tissue

text: normal adult heart, replicate 1


text: Human Genetics, University of Chicago

text: live

text: Generic

text: 2 months

text: Mus musculus

text: normal adult heart

text: whole heart

text: normal adult heart, replicate 2


text: Human Genetics, University of Chicago

text: live

text: Generic

text: 2 months

text: Mus musculus

text: normal adult heart

text: whole heart

text: normal adult heart, replicate 3


text: Human Genetics, University of Chicago

text: live

text: Generic

text: 2 months

text: Mus musculus

text: Tbx20 knockout adult heart

text: whole heart

text: Tbx20 knockout adult heart, replicate 1


text: Human Genetics, University of Chicago

text: live

text: Generic

text: 2 months

text: Mus musculus

text: Tbx20 knockout adult heart

text: whole heart

text: Tbx20 knockout adult heart, replicate 2


text: Human Genetics, University of Chicago

text: live

text: Generic

text: 2 months

text: Mus musculus

text: Tbx20 knockout adult heart

text: whole heart

text: Tbx20 knockout adult heart, replicate 3


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: Bethyl A300-275A

characteristic: antibody catalog number

text: Bethyl

characteristic: antibody manufacturer

characteristic: cell line

characteristic: chip antibody

text: Mus musculus

text: Embryonic stem cells


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Bethyl A302-276A

text: Bethyl

text: Mus musculus

text: Embryonic stem cells


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Bethyl A302-275A

text: Bethyl

text: Mus musculus

text: Embryonic stem cells

text: 1 hr

characteristic: tiime

text: DMSO

characteristic: treatment


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Bethyl A302-275A

text: Bethyl

text: Mus musculus

characteristic: organism

text: Embryonic stem cells

text: 1 hr

characteristic: title

text: 1 uM flavopiridol


text: live

text: Generic

text: Bethyl A301-779A

characteristic: antibody catalog number

text: Bethyl

text: Mus musculus

text: Embryonic stem cells

text: 1 hr

text: DMSO


text: live

text: Generic

text: Bethyl A301-779A

text: Bethyl

characteristic: antibody manufacturer

text: Mus musculus

text: Embryonic stem cells

text: 1 hr

text: 1 uM flavopiridol


text: INRA UMR 1301, CNRS UMR 6243, UNS

text: live

text: Generic

text: Egg masses were collected from infested tomato roots and eggs separated from the gelatinous matrix by treatment in 0.5% bleach. Eggs rinsed with distilled water were concentrated by centrifugation at 1600 g for 2 min in a 30% sucrose solution at 4 C, washed in distilled water, pelleted in a microcentrifuge and stored at -80 C until RNA extraction. Total RNA was extracted using TRIzol reagent (Invitrogen, Karlsruhe, Germany) according to the manufacturer's instructions and mRNA was purified by polyA purification using the Qiagen OligoTex kit (Qiagen, Hilden, Germany). cDNA libraries were obtained with the Cloneminor cDNA Library construction Kit (Invitrogen, USA). EST sequencing was done at the French Sequencing Center, Genoscope (Evry, France).

characteristic: description

text: Egg

characteristic: dev-stage

text: Meloidogyne incognita

text: Meloidogyne incognita egg cDNA library


characteristic: External Id

text: INRA UMR 1301, CNRS UMR 6243, UNS

text: live

text: Generic

text: Freshly hatched J2 were collected as described by Rosso et al. 1999 (PMID: 10478479). Cloneminor cDNA Library construction Kit (Invitrogen, USA). EST sequencing was done at the French Sequencing Center, Genoscope (Evry, France).

text: Meloidogyne incognita

text: Meloidogyne incognita J2 cDNA library


text: INRA UMR 1301, CNRS UMR 6243, UNS

characteristic: INSDC center name

text: live

text: Generic

text: Stressed J2s were obtained by soaking freshly hatched J2s for 1 hour in 0,2M NaCl, for 30 min in 1% EtOH, for 1 hour at 40 C or for 1 hour in 0.1% acetic acid. The different batches of stressed J2s were pooled before RNA extraction. Total RNA was extracted using TRIzol reagent (Invitrogen, Karlsruhe, Germany) according to the manufacturer's instructions and mRNA was purified by polyA purification using the Qiagen OligoTex kit (Qiagen, Hilden, Germany). cDNA libraries were obtained with the Cloneminor cDNA Library construction Kit (Invitrogen, USA). EST sequencing was done at the French Sequencing Center, Genoscope (Evry, France).

text: Stressed J2

text: Meloidogyne incognita

text: Meloidogyne incognita stressed J2 cDNA library


text: Institute of Hydrobiology, Chinese Academy of Sciences

characteristic: INSDC first public

text: live

text: Generic

text: genomic DNA extracted from the fin clips of ten wild common carp. DNA from these individuals was mixed equally as a DNA pool for library construction

text: adult

text: Cyprinus carpio

text: fin

characteristic: tissue-type

text: Cyprinus carpio SNP-enriched library by celery enzyme (CEL I) digestion and AFLP of sequences that contain SNPs


text: KORDI

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: To understand seasonal changes of picocyanobacterial diversity, especially Synechococcus, and to elucidate factors regulating their distribution, abundances and genetic diversity of picocyanobacteria and environmental variables were investigated at two stations located in the East China Sea and at one station in the East Sea. Genetic diversity was studied using clone library and bar-coded amplicon pyrosequencing of 16S-23S internal transcribed sequences. << file description >> File name Sampling date Station Depth (m) mid77.sff Feb, 2009 H6 0 mid78.sff Feb, 2009 H6 20 mid79.sff Apr, 2008 H6 0 mid80.sff Apr, 2008 H6 25 mid81.sff Jun, 2008 H6 0 mid82.sff Jun, 2008 H6 30 mid83.sff Aug, 2008 H6 0 mid84.sff Aug, 2008 H6 37 mid85.sff Oct, 2008 H6 0 mid86.sff Oct, 2008 H6 40 mid87.sff Feb, 2009 I 0 mid88.sff Feb, 2009 I 20 mid89.sff Apr, 2008 I 0 mid90.sff Apr, 2008 I 20 mid91.sff Jun, 2008 I 0 mid92.sff Jun, 2008 I 10 mid93.sff Aug, 2008 I 0 mid94.sff Aug, 2008 I 15 mid95.sff Oct, 2008 I 0 mid96.sff Oct, 2008 I 20 mid97.sff Apr, 2006 D5 0 mid98.sff Apr, 2006 D5 50 mid99.sff Feb, 2008 D5 0 mid100.sff Feb, 2008 D5 30 mid101.sff Oct, 2008 D5 0 mid102.sff Oct, 2008 D5 34 mid103.sff Dec, 2007 D5 0 mid104.sff Dec, 2007 D5 20 mid105.sff Mar, 2008 D5 0 mid106.sff Mar, 2008 D5 50 mid107.sff Aug, 2008 D5 0 mid108.sff Aug, 2008 D5 50

text: environmental samples

text: Picocyanobacterial diversity in the East China Sea and the East Sea


text: Baulcombe Group, Plant Sciences, University of Cambridge

text: live

text: Generic

characteristic: NCBI submission package

characteristic: ecotype

characteristic: ip antibody

text: Arabidopsis thaliana

text: Mixed Inflorescence

characteristic: tissue


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Arabidopsis thaliana

text: Mixed Inflorescence


text: Plant Sciences, University of Oxford

text: live

text: Generic

text: female

characteristic: gender

text: parent

characteristic: generation

text: Silene latifolia

characteristic: organism

text: shoot with flower buds

text: fBen

characteristic: title


characteristic: External Id

text: Plant Sciences, University of Oxford

text: live

text: Generic

text: female

text: parent

text: Silene latifolia

text: shoot with flower buds


text: Plant Sciences, University of Oxford

characteristic: INSDC center name

text: live

text: Generic

text: female

text: Silene latifolia

text: shoot with flower buds


text: Plant Sciences, University of Oxford

characteristic: INSDC first public

text: live

text: Generic

text: male

text: parent

text: Silene latifolia

text: shoot with flower buds

text: mBen


text: Plant Sciences, University of Oxford

text: live

text: Generic

text: male

text: Silene latifolia

text: shoot with flower buds


text: Plant Sciences, University of Oxford

text: live

text: Generic

text: male

text: not used in the crosses

text: Silene latifolia

text: shoot with flower buds


text: Plant Sciences, University of Oxford

text: live

text: Generic

text: male

text: not used in the crosses

text: Silene latifolia

text: pollen


text: Plant Sciences, University of Oxford

text: live

text: Generic

text: hermaphrodite

text: not used in the crosses

text: Silene vulgaris

text: shoot with flower buds

text: Svulgaris


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Staphylococcus aureus subsp. aureus CIG2018

characteristic: strain

text: 2018 StaphylococcusaureusCIG2018


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: DS-PDND

text: No

characteristic: is tumor

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Family/Twin/Trios

characteristic: study design

text: Parkinson Disease

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study Whole Exome Sequencing in Familial Parkinson Disease