characteristic: Coriell panel

characteristic: Coriell plate

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Yoruba in Ibadan, Nigeria

text: mother

characteristic: Relationship

characteristic: SRA accession

text: AFR

text: African

text: Human HapMap individual NA19235

characteristic: description

text: Homo sapiens

characteristic: organism

text: YRI

text: female

text: Coriell GM19235

characteristic: title


status: PUBLIC

tag: attribute

characteristic: DNA id

characteristic: External Id

characteristic: Family ID

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Yoruba in Ibadan, Nigeria

characteristic: Population Description

text: father

text: AFR

characteristic: Super Population Code

text: African

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA19236

characteristic: family id

text: Homo sapiens

text: YRI

characteristic: population

text: male

characteristic: sex

text: Coriell GM19236


characteristic: Coriell panel

characteristic: Coriell plate

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Yoruba in Ibadan, Nigeria

text: mother

characteristic: Relationship

characteristic: SRA accession

text: AFR

text: African

text: Human HapMap individual NA19247

characteristic: description

text: Homo sapiens

characteristic: organism

text: YRI

text: female

text: Coriell GM19247

characteristic: title


characteristic: DNA id

characteristic: External Id

characteristic: Family ID

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Yoruba in Ibadan, Nigeria

text: father

text: AFR

text: African

text: Human HapMap individual NA19248

text: Homo sapiens

text: YRI

text: male

text: Coriell GM19248


characteristic: Coriell panel

characteristic: Coriell plate

text: NCBI

text: live

text: Generic

text: Yoruba in Ibadan, Nigeria

characteristic: Population Description

text: father

text: AFR

characteristic: Super Population Code

text: African

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA19256

characteristic: family id

text: Homo sapiens

text: YRI

characteristic: population

text: male

characteristic: sex

text: Coriell GM19256


characteristic: External Id

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Brucella canis CNGB 1172

characteristic: collaborator sample id

text: broadinstitute.org:bsp.prod.sample:2TGFY

characteristic: lsid

text: Brucella canis CNGB 1172

characteristic: organism

characteristic: sample barcode

text: Genomic DNA

characteristic: sample type

text: CNGB 1172

characteristic: strain

text: Brucella canis CNGB 1172 Genomic DNA sample 187236.0

characteristic: title


text: Stowers Institute For Medical Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Haploid WT Saccharomyces cerevisiae generation 1

characteristic: description

text: Saccharomyces cerevisiae

text: Generic sample from Saccharomyces cerevisiae


characteristic: External Id

text: Stowers Institute For Medical Research

text: live

text: Generic

text: Haploid WT Saccharomyces cerevisiae generation 20

text: Saccharomyces cerevisiae


text: Stowers Institute For Medical Research

text: live

text: Generic

characteristic: NCBI submission model

text: Haploid mut1 Saccharomyces cerevisiae generation 20

text: Saccharomyces cerevisiae


text: Stowers Institute For Medical Research

text: live

text: Generic

characteristic: NCBI submission package

text: Haploid mut2 Saccharomyces cerevisiae generation 20

text: Saccharomyces cerevisiae


text: Stowers Institute For Medical Research

text: live

text: Generic

characteristic: SRA accession

text: Diploid Parental WT Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


WUGSC C. elegans N2 Bristol

text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Caenorhabditis elegans N2 Bristol strain

text: Caenorhabditis elegans

text: N2 Bristol

text: Generic sample from Caenorhabditis elegans


WUGSC C. elegans CB4858

text: live

text: Generic

text: Caenhorhabditis elegans strain CB4858

text: Caenorhabditis elegans


1001 genomes Tsu-1

text: Max Planck Institute for Developmental Biology

text: live

text: Generic

characteristic: TAIR seed stock number

text: Arabidopsis thaliana

text: Generic sample from Arabidopsis thaliana


Horn fly egg

text: Knipling-Bushland U.S. Livestock Insects Research

text: live

text: Generic

text: Horn fly, Haematobia irritans egg

text: Haematobia irritans

text: Generic sample from Haematobia irritans


Horn fly larvae

text: live

text: Generic

text: Haematobia irritans larvae

text: Haematobia irritans

text: Generic sample from Haematobia irritans


Horn fly adult female

text: live

text: Generic

text: Haematobia irritans adult female

text: Haematobia irritans

text: Generic sample from Haematobia irritans


horn fly adult male

text: live

text: Generic

text: Haematobia irritans adult male

text: Haematobia irritans

text: Generic sample from Haematobia irritans


Manduca sexta RNA sample 1

text: University of Oklahoma Norman Campus, Advanced Center for Genome Technology

text: live

text: Generic

text: ESTs derived from a mixture of tissues and conditions: hemocytes (10%), fat body (15%), integument (5%) and trachea (5%) from day 2, naive 5th instar larvae hemocytes (20%) and fat body (35%) from day 2, 5th instar larvae injected with a mixture of killed bacteria and fungi hemocytes (5%) and fat body (5%) from wandering larvae.

text: Manduca sexta

text: Generic sample from Manduca sexta


text: Cancer Research UK (CRUK)

text: live

text: Generic

text: Mouse histone H3 tri-methylated at lysine 4 (H3K4me3) in mouse hepatocyte cells, targeted using Abcam antibody ab8580

text: Mus musculus

text: Generic sample from Mus musculus


text: Cancer Research UK (CRUK)

text: live

text: Generic

text: Mouse transcription factor: hepatocyte nuclear factor 4, alpha (HNF4A), targeted using Santa-Cruz antibody sc-8987

text: Mus musculus

text: Generic sample from Mus musculus


INPUT

text: Cancer Research UK (CRUK)

text: live

text: Generic

text: Mouse hepatocyte input, un-immunoprecipitated, for use as a control

text: Mus musculus

text: Generic sample from Mus musculus


Screwworm fly egg

text: live

text: Generic

text: Screwworm Fly, Cochliomyia hominivorax, egg

text: Cochliomyia hominivorax

text: Generic sample from Cochliomyia hominivorax


Screwworm Fly larvae

text: live

text: Generic

text: Cochliomyia hominivorax larvae

text: Cochliomyia hominivorax


Screwworm fly adult female

text: live

text: Generic

text: Cochliomyia hominivorax adult female

text: Cochliomyia hominivorax


Screwworm fly adult male

text: live

text: Generic

text: Cochliomyia hominivorax adult male

text: Cochliomyia hominivorax


Drosophila pseudoobscura

text: Duke University

text: live

text: Generic

text: total genomic DNA from adult females from Flagstaff 1993 strain of D. pseudoobscura

text: Drosophila pseudoobscura

text: Flagstaff 1993

text: Generic sample from Drosophila pseudoobscura


human gut metagenome(healthy)

text: Genome Information Research Center of RIMD in Osaka University

text: live

text: Generic

text: Microbial fraction from human stool. Donor was healthy.

text: human gut metagenome

text: Generic sample from human gut metagenome


human gut metagenome(diarrhea)

text: live

text: Generic

text: Microbial fraction from human stool. Donor had diarrhea.

text: human gut metagenome


characteristic: Bloomington Stock Center number

text: University of California - Davis, Drosophila Population Genomics Project

text: live

text: Generic

text: Genome of an inbred (20 generations of sib-mating) line of Drosophila melanogaster derived from a stock established from a single inseminated female collected in Raleigh, NC in 2003; see Jordan, KW, et al. Genome Biology, 2007.

characteristic: flybase id

characteristic: inbred line

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


characteristic: IN

text: live

text: Generic

text: Drosophila melanogaster

characteristic: organism


text: live

text: Generic

text: A Drosophila melanogaster genome that is isogenic for chromosomes 2 and 3 (extracted with balancers) from an isofemale line established from a single inseminated female collected in Malawi, Africa.

characteristic: isogenic line

text: Drosophila melanogaster

characteristic: title


text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS.ba

text: Newbler v. 1.1.02.15

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Acinetobacter sp. ATCC 27244

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft33.36x;255

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: skin

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Acinetobacter sp. ATCC 27244

text: Acinetobacter sp. ATCC 27244

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina, Sanger

characteristic: sequencing method

characteristic: sop

text: ATCC 27244

text: Homo sapiens

characteristic: specific host

text: ATCC 27244

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Acinetobacter sp. ATCC 27244


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 1.1.03.24

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Corynebacterium pseudogenitalum ATCC 33035

characteristic: description

text: Level 5: Non-contiguous Finished120.49x;16

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

characteristic: organism

text: Reference Genome

text: not determined

text: ATCC 33035

text: Homo sapiens

text: ATCC 33035

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium pseudogenitalium ATCC 33035

characteristic: title


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 1.1.03.19

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: culture-collection

text: Corynebacterium seminale ATCC 51867

characteristic: estimated size

characteristic: feature

text: Level 5: Non-contiguous Finished42.73x;106

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina, Sanger

characteristic: sequencing method

characteristic: sop

text: ATCC 51867

text: Homo sapiens

characteristic: specific host

text: ATCC 51867

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium glucuronolyticum ATCC 51867


characteristic: External Id

text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Geobacter sp. M21 isolate

characteristic: description

text: Geobacter sp. M21

characteristic: organism

characteristic: strain

text: Generic sample from Geobacter sp. M21


FTTS

text: live

text: Generic

text: Cyanothece sp. PCC 8802

text: Rippkaea orientalis PCC 8802

text: PCC 8802

text: Generic sample from Cyanothece sp. PCC 8802

characteristic: title


text: live

text: Generic

text: Geobacillus sp. WCH70 isolate

text: Geobacillus sp. WCH70

text: Generic sample from Geobacillus sp. WCH70


human gut metagenome (noro01)

text: Genome Information Research Center of RIMD in Osaka University

text: live

text: Generic

text: Microbial fraction from human stool specimen. Donor was infected with Norovirus.

text: human gut metagenome


human gut metagenome (noro02)

text: live

text: Generic

text: human gut metagenome

text: Generic sample from human gut metagenome


human gut metagenome (noro03)

text: live

text: Generic

text: human gut metagenome


human gut metagenome (noro04)

text: live

text: Generic

text: human gut metagenome


human gut metagenome (noro05)

text: live

text: Generic

text: human gut metagenome


human nasopharyngeal metagenome (flu01)

text: live

text: Generic

text: Microbial fraction from human nasal specimen. Donor was infected with Influenza A virus.

text: human nasopharyngeal metagenome

text: Generic sample from metagenome sequence


human nasopharyngeal metagenome (flu02)

text: live

text: Generic

text: human nasopharyngeal metagenome

text: Generic sample from metagenome sequence


human nasopharyngeal metagenome (flu03)

text: live

text: Generic

text: human nasopharyngeal metagenome

text: Generic sample from metagenome sequence


E.coli DH10B sample

text: J. Craig Venter Institute

text: live

text: Generic

characteristic: substrain

text: Generic sample from Escherichia coli str. K-12 substr. DH10B


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Bacillus vallismortis NRRL B-14890

text: NRRL B-14890

text: Generic sample from Bacillus vallismortis NRRL B-14890

text: type strain of Bacillus vallismortis

characteristic: type material


text: live

text: Generic

text: United Kingdom

characteristic: country

text: blood

characteristic: isolation-source

text: Homo sapiens

characteristic: nat-host

text: Streptococcus pyogenes SS1447

text: Generic sample from Streptococcus pyogenes SS1447


FTAN

characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Cyanothece sp. PCC 7425

text: Cyanothece sp. PCC 7425

text: PCC 7425

text: Generic sample from Cyanothece sp. PCC 7425


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: USA

text: blood

text: Homo sapiens

text: Streptococcus pyogenes MGAS2111

text: Generic sample from Streptococcus pyogenes MGAS2111


text: National Center for Genome Resources

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: Generic sample from Homo sapiens


FNOF

characteristic: GOLD Stamp ID

text: Gram-

characteristic: Gram Staining

characteristic: Greengenes ID

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: free living

characteristic: biotic relationship

text: Coccus-shaped

characteristic: cell shape

text: India

text: Keywords: GSC:MIGS:2.1

text: Fresh water

characteristic: environment

characteristic: investigation type

text: Rice fields in Cuttack, Orissa, India

characteristic: isolation site

text: fresh water in rice field

text: 20.237556 N 84.270018 E

characteristic: lat lon

text: Nonmotile

characteristic: motility

text: Gloeothece verrucosa PCC 7822

text: Cyanothece sp. PCC 7822

characteristic: project name

text: PCC 7822

text: aerobe

text: PCC 7822

text: Mesophile

characteristic: temperature range

text: Cyanothece sp. PCC 7822, complete genome.

text: reference strain of Gloeothece verrucosa


FTTP

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: Geobacillus sp. G11MC16

characteristic: description

text: Geobacillus thermodenitrificans

characteristic: organism

characteristic: strain

text: Generic sample from Geobacillus sp. G11MC16

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Neisseria meningitidis N1568

text: Generic sample from Neisseria meningitidis N1568


text: live

text: Generic

text: Australia

characteristic: country

text: skin

characteristic: isolation-source

text: Homo sapiens

characteristic: nat-host

text: Streptococcus pyogenes AA216

text: Generic sample from Streptococcus pyogenes AA216


Bacteroides eggerthii DSM 20697

text: Washington University, Genome Sequencing Center

text: live

text: MIGS.ba

text: Newbler v. post-1.1.03-Dev_01252007

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Bacteroides eggerthii DSM 20697

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft60.8x;485

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Bacteroides eggerthii DSM 20697

text: Bacteroides eggerthii DSM 20697

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: DSM 20697, ATCC 27754

text: Homo sapiens

characteristic: specific host

text: DSM 20697

text: MIGS Cultured Bacterial/Archaeal sample from Bacteroides eggerthii DSM 20697

text: type strain of Bacteroides eggerthii

characteristic: type material


Pichia stipitis mutational profiling

characteristic: External Id

text: Boston College, Marthlab

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Pichia stipitis Shi21 is derived from reference strain CBS 6054. Shi21 has been subjected to chemical mutagenesis, phenotypic selection, genetic engineering and adaptive evolution in order to develop strains improved for ethanol production. Chemical mutagenesis and selection resulted in small improvements in ethanol production attributable in part to carbon catabolite derepression (Supplementary Figure 1, Methods). Disruption of CYC1 (Cyctochrome c, isoform 1) to create strain Shi21 increased the specific ethanol production rate by 50% and the ethanol yield by 10%

characteristic: description

text: Scheffersomyces stipitis Shi21

characteristic: organism

text: Generic sample from Scheffersomyces stipitis Shi21

characteristic: title


text: University of Tokyo, Graduate School of Frontier Science

text: live

text: Generic

text: Drosophila Melanogaster Embryo. Strain name is Canton-S

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


1-day-old embryos of Hd-rR medaka

text: live

text: Generic

text: Oryzias latipes

text: Generic sample from Oryzias latipes


2-day-old embryos of Hd-rR medaka

text: live

text: Generic

text: Oryzias latipes

text: Generic sample from Oryzias latipes


3-day-old embryos of Hd-rR medaka

text: live

text: Generic

text: Oryzias latipes

text: Generic sample from Oryzias latipes


5-day-old embryos of Hd-rR medaka

text: live

text: Generic

text: Oryzias latipes

text: Generic sample from Oryzias latipes


10-day-old embryos of Hd-rR medaka

text: live

text: Generic

text: Oryzias latipes

text: Generic sample from Oryzias latipes


14-day-old embryos of Hd-rR medaka

text: live

text: Generic

text: Oryzias latipes

text: Generic sample from Oryzias latipes


skaftaDNA

text: University of Hawaii

text: live

text: Generic

text: 400 ml water sample collected from 3 m above the lake bed (112 m below the ice-water interface) and filtered onto 0.2-micron 25 mm filter from which DNA was extracted.

characteristic: latitude

characteristic: longitude

text: uncultured bacterium

text: Generic sample from uncultured bacterium


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Australia

characteristic: country

text: skin

characteristic: isolation-source

text: Homo sapiens

characteristic: nat-host

text: Streptococcus pyogenes AA472

characteristic: strain

text: Generic sample from Streptococcus pyogenes AA472


FOBP

characteristic: External Id

text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

text: live

text: Generic

text: Chthoniobacter flavus Ellin428

text: Chthoniobacter flavus Ellin428

text: Generic sample from Chthoniobacter flavus Ellin428

text: type strain of Chthoniobacter flavus

characteristic: type material


FHTW

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: trifolii WSM2304

characteristic: biovar

text: Generic sample from Rhizobium leguminosarum bv. trifolii WSM2304


Blastulas of Hd-rR medaka

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Oryzias latipes

text: Generic sample from Oryzias latipes


HMP015-454 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler v. 1.1.03.24-64-7

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Capnocytophaga sputigena is a gram-negative, rod-shaped bacterium located in the gingival crevice and associated with periodontal disease.

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft19x;65

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Gingival crevices

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Capnocytophaga sputigena ATCC 33612

characteristic: organism

text: Capnocytophaga sputigena Capno, ATCC 33612

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: ATCC 33612

text: Homo sapiens

characteristic: specific host

text: Capno

text: MIGS Cultured Bacterial/Archaeal sample from Capnocytophaga sputigena ATCC 33612

characteristic: title


characteristic: External Id

text: Washington University Center for Genome Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: human gut metagenome

text: Generic sample from human gut metagenome


name: Sarcophaga crassipalpis laboratory colony

text: University of Florida

text: live

text: Generic

text: Flesh flies in the genus Sarcophaga are important models for investigating endocrinology, diapause, cold hardiness, reproduction, and immunity. Despite the prominence of Sarcophaga flesh flies as models for insect physiology and biochemistry, and in forensic studies, little genomic or transcriptomic data are available for members of this genus. We used massively parallel pyrosequencing on the Roche 454-FLX platform to produce a substantial EST dataset for the flesh fly Sarcophaga crassipalpis. To maximize sequence diversity, we pooled RNA extracted from whole bodies of all life stages and normalized the cDNA pool after reverse transcription.

characteristic: description

text: Sarcophaga crassipalpis

text: Generic sample from Sarcophaga crassipalpis


FOIF

text: live

text: Generic

text: trifolii WSM1325

characteristic: biovar

characteristic: strain

text: Generic sample from Rhizobium leguminosarum bv. trifolii WSM1325


text: live

text: Generic

text: Pseudovibrio sp. JE062

characteristic: organism

text: Generic sample from Pseudovibrio sp. JE062


text: live

text: Generic

text: Vibrio sp. HV10

text: Generic sample from Vibrio sp. HV10


text: University of Tokyo, Graduate School of Frontier Science

text: live

text: Generic

text: Drosophila Melanogaster Larva. Strain name is Canton-S.

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


text: live

text: Generic

text: Drosophila Melanogaster Young Male. Strain name is Canton-S2.

text: Drosophila melanogaster


text: live

text: Generic

text: Drosophila Melanogaster Young Female. Strain name is Canton-2.

text: Drosophila melanogaster


text: live

text: Generic

text: Drosophila Melanogaster Old Male. Strain name is Canton-2.

text: Drosophila melanogaster


text: live

text: Generic

text: Drosophila Melanogaster Old Female. Strain name is Canton-2.

text: Drosophila melanogaster


text: live

text: Generic

text: Drosophila Melanogaster. Schneider -2 cell line.

text: Drosophila melanogaster


HMP042-454 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler v. 1.1.03.24-64-7

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Staphylococcus capitis is a gram-positive bacterium that inhabits the skin. The bacterium has been isolated from the bloodstream of a premature infant that died of sepsis.

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 5: Non-contiguous Finished18x;32

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: skin from right arm of human male

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Right arm

characteristic: misc_param: HMP body site

text: skin

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Staphylococcus capitis SK14

text: Staphylococcus capitis SK14

characteristic: project name

text: Reference Genome

text: not determined

text: not determined

characteristic: sequencing method

text: BEI HM-117

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Staphylococcus capitis SK14


HMP033-454 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CA 5.1

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Corynebacterium amycolatum is a gram-positive, aerobe with irregular morphology. The bacterium has been isolated from the skin and in immunosuppressed individuals it can cause nosocomial endocarditis or fatal sepsis.

characteristic: description

text: Level 6: Finished20x;48

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Right arm

text: skin

text: not determined

text: not determined

text: Corynebacterium amycolatum SK46

characteristic: organism

text: Corynebacterium amycolatum SK46

text: Reference Genome

text: not determined

characteristic: sop

text: BEI HM-109

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium amycolatum SK46

characteristic: title


HMP050-454 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler 1.1.03.24-64-7

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Campylobacter gracilis is a gram-negative, obligately anaerobe found in the gingival crevice as well as brain abscesses, pulmonary infections, and wound infections. The bacterium is non-motile and is often associated with infections.

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft21x;33

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Gingival crevices

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Campylobacter gracilis RM3268

text: Campylobacter gracilis RM3268

characteristic: project name

text: Reference Genome

text: not determined

text: ATCC 33236

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Campylobacter gracilis RM3268


HMP048-454 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 1.1.03.24-64-7

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Campylobacter rectus is a gram-negative, microaerophilic, rod-shaped bacterium found in the gingival crevice. The bacterium is motile and has a flagellum and surface layer (S-layer). It has been associated with periodontitis and the S-layer is a candidate as a cause of the bacterium's virulence.

characteristic: description

text: Level 2: High-Quality Draft26x;89

text: not determined

text: not determined

text: oral

characteristic: isolation-source

text: not determined

text: biological product [ENVO:02000043]

text: Gingival crevices

text: oral

text: not determined

text: not determined

text: Campylobacter rectus RM3267

characteristic: organism

text: Campylobacter rectus RM3267, CCUG 20446

text: Reference Genome

text: not determined

text: not determined

characteristic: sequencing method

characteristic: sop

text: CCUG 20446, ATCC 33238

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Campylobacter rectus RM3267


HMP017-454 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler 1.1.03.24-64-7

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Atopobium rimae is a gram-positive, rod-shaped bacterium found in the gingival crevice and associated with periodontitis.

characteristic: estimated size

characteristic: feature

text: Level 6: Finished10-20x;9

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Lancefieldella rimae ATCC 49626

text: Atopobium rimae ATCC 49626

text: Reference Genome

text: not determined

text: not determined

text: ATCC 49626, VPI D140H-11A

text: Homo sapiens

text: ATCC 49626

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Atopobium rimae ATCC 49626

characteristic: title

text: type strain of Lactobacillus rimae

characteristic: type material


HMP028-454 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler 1.1.03.24-64-7

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Propionibacterium acnes is a gram-positive, anaerobic bacterium that inhabits the human skin. The bacterium is normally harmless but when the bacterium comes into contact with a hair follicle, it causes the body to produce an inflammatory response resulting in acne vulgaris.

characteristic: description

text: Level 6: Finished22.4x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: skin

text: not determined

text: not determined

text: Cutibacterium acnes SK137

characteristic: organism

text: Propionibacterium acnes SK137

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-122

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Propionibacterium acnes SK137


HMP035-454 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler 1.1.03.24-64-7

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Corynebacterium tuberculostearicum is a gram-positive, rod-shaped, non-motile bacterium found on the skin.

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft25x;37

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: skin

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Reference Genome

text: not determined

text: BEI HM-110

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium tuberculostearicum SK141

characteristic: title


HMP039-454 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 1.1.03.24-64-7

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Enterococcus faecalis is a gram-positive, facultatively anaerobic, cocci that inhabits the gastrointestinal tract and female genital. The bacterium is an opportunistic pathogen and has become a serious concern in hospitals because of of its antibiotic resistance. The genomic properties of the bacterium, which include up to 25% mobile elements, contain genes for antibiotic resistance.

characteristic: description

text: Level 5: Non-contiguous Finished23.6x;79

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: oral

text: not determined

text: not determined

text: Enterococcus faecalis TUSoD Ef11

characteristic: organism

text: Enterococcus faecalis TUSoD Ef11

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: BEI HM-51

text: Homo sapiens

text: TUSoD Ef11

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TUSoD Ef11


HMP044-454 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler 1.1.03.24-64-7

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Gemella haemolysans is a gram-positive, facultatively anaerobic, cocci bacterium that inhabits the oral cavity. The bacterium is a component of dental plaques and infections that are associated with poor health.

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft61x;15

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Gemella haemolysans ATCC 10379

text: Gemella haemolysans ATCC 10379

text: Reference Genome

text: not determined

characteristic: sop

text: ATCC 10379, NCTC 5414, CCUG 37985, CIP 101126, LMG 18984

text: Homo sapiens

characteristic: specific host

text: ATCC 10379

text: MIGS Cultured Bacterial/Archaeal sample from Gemella haemolysans ATCC 10379

text: type strain of Gemella haemolysans

characteristic: type material


HMP049-454 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler 1.1.03.24-64-7

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Campylobacter showae is a gram-negative, anaerobic/microaerophillic, rod-shaped bacterium isolated from the gingival crevice and uses a multiple unipolar flagella for motility. The bacterium was been associated with periodontitis.

characteristic: description

text: Level 2: High-Quality Draft27x;33

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Gingival crevices

text: oral

text: not determined

text: not determined

text: Campylobacter showae RM3277

characteristic: organism

text: Campylobacter showae RM3277

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: CCUG 30254, ATCC 51146

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Campylobacter showae RM3277

characteristic: title


Citrobacter sp. ATCC 29220

text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Citrobacter youngae ATCC 29220

text: ATCC 29220

text: Generic sample from Citrobacter youngae ATCC 29220


text: live

text: Generic

text: Clostridium sp. M62/1

text: Generic sample from Clostridium sp. M62/1


text: Western Washington University

text: live

text: Generic

text: We sampled a variety of different life stages of Rhagoletis pomonella ranging from larvae to adults. We collected larvae (stages L2 and L3) from field-infested apples in Urbana, IL, during the summer of 2007. Larvae were dissected from infested apples and washed with water before being shock-frozen on dry ice. We obtained pupae from infested hawthorn fruit in South Bend, IN, during the fall of 2006. Infested fruit was transported to the laboratory where larvae emerged and pupated. One set of pupae was transferred to 4C after a prediapause period of two weeks and kept under diapause conditions for 4 months. A second set of pupae was kept at 25C until eclosion. Samples were taken from each set of individuals in regular intervals and shock-frozen at -80C. After removal from diapause additional samples were taken from the first set representing post-diapause developmental stages. Hawthorn race adults were obtained when pupae held at 25C eclosed. Apple race adults were caught on fruit in an apple orchard in Urbana, IL, in the summer of 2008. Live adults were shock-frozen on dry ice and the heads were separated from the adult bodies

text: Rhagoletis pomonella

text: Generic sample from Rhagoletis pomonella


American red mangrove

text: University of Illinois

text: live

text: Generic

text: Rhizophora mangle (Rhizophoraceae) is the keystone dominant plant species in the intertidal neotropical forests. Plant material for this study was taken from both greenhouse and field (Twin Cays, Belize; dwarf, tall, and P-fertilized dwarf). mRNA from 68 different tissue types and growth conditions were pooled. These included young leaf buds and shoot meristems, mature buds, stipules, unrolling leaves, expanding leaves, most recently fully expanded leaves, senescing leaves (early stages), young stem, fine roots, old, thickened roots, mature stem bark, prop root tips, hypocotyl peels, young and mature propagules, and flower. Tissue samples were immediately stored in liquid nitrogen and total RNA was isolated using Agilent Plant RNA isolation mini kit.

text: Rhizophora mangle

text: Generic sample from Rhizophora mangle


Heritiera littoralis

text: University of Illinois

text: live

text: Generic

text: Heritiera littoralis, is typically found at the freshwater edge of mangrove zones (old world tropics), although it can tolerate full strength sea water. Tissue samples for this study were taken from leaves, roots, buds, and young stems of seedlings grown in the greenhouse. Tissue samples were immediately stored in liquid nitrogen and total RNA was isolated using the Agilent Plant RNA isolation mini kit.

text: Heritiera littoralis

text: Generic sample from Heritiera littoralis


Dictyocaulus viviparus

text: live

text: Generic

text: Dictyocaulus viviparus

text: Generic sample from Dictyocaulus viviparus


Edwardsiella tarda ATCC 23685

text: live

text: MIGS.ba

text: not determined

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft17.1x;372

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Edwardsiella tarda ATCC 23685

text: Edwardsiella tarda ATCC 23685

text: Reference Genome

text: not determined

characteristic: sop

text: ATCC 23685

text: Homo sapiens

characteristic: specific host

text: ATCC 23685

text: MIGS Cultured Bacterial/Archaeal sample from Edwardsiella tarda ATCC 23685


Enterobacter cancerogenus ATCC 35316

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: Level 3: Improved-High-Quality Draft29.7x;83

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Enterobacter cancerogenus ATCC 35316

characteristic: organism

text: Enterobacter cancerogenus ATCC 35316

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: ATCC 35316

text: Homo sapiens

text: ATCC 35316

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterobacter cancerogenus ATCC 35316


Eubacterium dolichum DSM 3991

text: live

text: MIGS.ba

text: PCAP

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 3: Improved-High-Quality Draft11.6x;51

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Amedibacillus dolichus DSM 3991

text: Eubacterium dolichum DSM 3991

text: Reference Genome

text: not determined

text: 454-GS20, Sanger

characteristic: sop

text: ATCC 29143, DSM 3991

text: Homo sapiens

text: DSM 3991

text: MIGS Cultured Bacterial/Archaeal sample from Eubacterium dolichum DSM 3991

characteristic: title

text: type strain of Eubacterium dolichum

characteristic: type material


Heterorhabditis bacteriophora

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Heterorhabditis bacteriophora

characteristic: organism

text: Generic sample from Heterorhabditis bacteriophora


Plasmodium falciparum

text: University of California, San Francisco, DeRisi lab

text: live

text: Generic

text: Poly-A selected RNA from Plasmodium falciparum 3D7 Oxford late schizont parasites.

characteristic: description

text: Plasmodium falciparum 3D7

text: Generic sample from Plasmodium falciparum 3D7


text: Naval Medical Research Center, Biological Defense Research Directorate

text: live

text: Generic

text: Acinetobacter baumannii strain WBL7355

text: Acinetobacter baumannii WBL7355

characteristic: strain

text: Generic sample from Acinetobacter baumannii WBL7355


name: 454 EST sequencing of Myzus persicae (red lineage)

text: Boyce Thompson Institute

text: live

text: Generic

text: Normalized cDNA was prepared from mixed stage, asexual female aphids of a red, tobacco-adapted lineage of Myzus persicae. cDNA was submitted for 454 sequencing at University of Oklahoma.

text: Myzus persicae

text: Generic sample from Myzus persicae


E. coli

text: Illumina Cambridge Ltd.

text: live

text: Generic

text: Escherichia coli str. K-12 substr. MG1655 was obtained from ATCC. Genomic DNA was prepared by standard methods

characteristic: substrain

text: Generic sample from Escherichia coli str. K-12 substr. MG1655


characteristic: Bloomington Stock Center number

text: University of California - Davis, Drosophila Population Genomics Project

text: live

text: Generic

text: Genome of an inbred (20 generations of sib-mating) line of Drosophila melanogaster derived from a stock established from a single inseminated female collected in Raleigh, NC in 2003; see Jordan, KW, et al. Genome Biology, 2007.

characteristic: flybase id

characteristic: inbred line

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


text: live

text: Generic

text: Drosophila melanogaster

characteristic: title


1001 genomes Col-0

characteristic: External Id

text: Max Planck Institute for Developmental Biology

text: live

text: Generic

characteristic: TAIR seed stock number

text: Arabidopsis thaliana

text: Generic sample from Arabidopsis thaliana


1001 genomes Bur-0

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Arabidopsis thaliana


text: Washington University, Genome Sequencing Center

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: This isolate is from a patient with H. pylori-associated atrophic gastritis who later progressed to gastric carcinoma. HPKX_438_AG0C1 and HPKX_438_CA4C1 were isolated from the same individual. HPKX_438_AG0C1 was isolated when the patient had Helicobacter pylori-associated chronic atrophic gastritis. HPKX_438_CA4C1 was isolated 4 years later, after the patient had developed gastric adenocarcinoma.

text: patient with Helicobactor pylori-associated atrophic gastritis who later progressed to gastric carcinoma

characteristic: isolation-source

text: Helicobacter pylori HPKX_438_AG0C1

text: Generic sample from Helicobacter pylori HPKX_438_AG0C1


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: This isolate is from a patient with H. pylori-associated gastric carcinoma, four years after isolation of strain HPKX_438_AG0C1. HPKX_438_AG0C1 and HPKX_438_CA4C1 were isolated from the same individual. HPKX_438_AG0C1 was isolated when the patient had Helicobacter pylori-associated chronic atrophic gastritis. HPKX_438_CA4C1 was isolated 4 years later, after the patient had developed gastric adenocarcinoma.

text: patient with Helicobacter pylori-associated gastric carcinoma

text: Helicobacter pylori HPKX_438_CA4C1

text: Generic sample from Helicobacter pylori HPKX_438_CA4C1


Heterodera glycines TN10

text: University of Illinois at Urbana-Champaign

text: live

text: Generic

characteristic: SRA accession

text: The genomic DNA sequence comes from the nematode Heterodera glycines, the common name is the soybean cyst nematode. DNA sequence data collected from strain of the nematode, called TN10. Nematode DNA was extracted from frozen second-stage juveniles of the soybean cyst nematode, species Heterodera glycines. A standard Proteinase K with phenol-chloroform extraction method was used (see details below). SCN eggs were harvested as described in Niblack (1993). Eggs were deposited on top of an egg hatching apparatus consisting of 41 micron mesh sieve held taut between 2 stacked 50 ml polypropylene beakers with there bottoms cut off. The bottom surface of the sieve cloth was carefully laid on top of a shallow layer of sterile dH20 containing 1%streptomycin sulfate solution (Sigma) in a 60mm petri dish bottom. As the second-stage juveniles (J2s) hatched, they crawled through the mesh to the liquid in the petri dish. The clean J2s were collected from the petri dish after allowing the J2 to accumulate for 24 hours. The J2s were concentrated by centrifugation until a 250 ul packed J2 pellet was obtained, then the J2's were flash frozen in liquid nitrogen. The frozen J2 pellet was transferred to a tissue publverizer (Fisher Scientific) precooled in liquid nitrogen and crushed. The pulverized frozen nematode fragments were mixed with 2 ml of proteinase K solution (0.1M Tris-HCl (pH 8.0), 1 mM EDTA, 0.15M NaCl, 1% sodium dodecyl sulfate, 1mM dithiothreitol, 2 mg/ml proteinase K) and were incubated for one hour at 37C. The DNA was phenol/chloroform-extracted, then ethanol precipitated as described in (Sambrook et al. 1989). The DNA was resuspended in 1 ml of TE (10 mM Tris-HCl pH 8, EDTA pH 8) containing RNase A at 10 microgram per ml and incubated at 37 degrees C for one hour. The DNA was next diluted to 20ml with column buffer (750 mM NaCl; 50mM MOPS , pH 7; 15% isopropanol, 0.15% Triton X-100) and then further purified on a Genomic-tip 500/G as described in the manufacturers protocol (Qiagen, Valencia, CA). The eluted SCN genomic DNA was concentrated by ethanol precipitation and resuspended in 200 ul of TE.

characteristic: description

text: Heterodera glycines

characteristic: organism

text: Generic sample from Heterodera glycines


Heterodera glycines TN20

text: live

text: Generic

text: The genomic DNA sequence comes from the nematode Heterodera glycines, the common name is the soybean cyst nematode. DNA sequence data collected from strain of the nematode, called TN20.i Nematode DNA was extracted from frozen second-stage juveniles of the soybean cyst nematode, species Heterodera glycines. A standard Proteinase K with phenol-chloroform extraction method was used (see details below). SCN eggs were harvested as described in Niblack (1993). Eggs were deposited on top of an egg hatchi ng apparatus consisting of 41 micron mesh sieve held taut between 2 stacked 50 ml polypropylene bea kers with there bottoms cut off. The bottom surface of the sieve cloth was carefully laid on top of a shallow layer of sterile dH20 containing 1%streptomycin sulfate solution (Sigma) in a 60mm petri dish bottom. As the second-stage juveniles (J2s) hatched, they crawled through the mesh to the liq uid in the petri dish. The clean J2s were collected from the petri dish after allowing the J2 to ac cumulate for 24 hours. The J2s were concentrated by centrifugation until a 250 ul packed J2 pellet was obtained, then the J2's were flash frozen in liquid nitrogen. The frozen J2 pellet was transferred to a tissue publverizer (Fisher Scientific) precooled in liqui d nitrogen and crushed. The pulverized frozen nematode fragments were mixed with 2 ml of proteinas e K solution (0.1M Tris-HCl (pH 8.0), 1 mM EDTA, 0.15M NaCl, 1% sodium dodecyl sulfate, 1mM dithiot hreitol, 2 mg/ml proteinase K) and were incubated for one hour at 37C. The DNA was phenol/chlorofo rm-extracted, then ethanol precipitated as described in (Sambrook et al. 1989). The DNA was resuspe nded in 1 ml of TE (10 mM Tris-HCl pH 8, EDTA pH 8) containing RNase A at 10 microgram per ml and i ncubated at 37 degrees C for one hour. The DNA was next diluted to 20ml with column buffer (750 mM NaCl; 50mM MOPS , pH 7; 15% isopropanol, 0.15% Triton X-100) and then further purified on a Genomic -tip 500/G as described in the manufacturers protocol (Qiagen, Valencia, CA). The eluted SCN genom ic DNA was concentrated by ethanol precipitation and resuspended in 200 ul of TE.

text: Heterodera glycines

characteristic: strain

text: Generic sample from Heterodera glycines


American beech whole plant 1

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from tissues from healthy, mature tree #1504 at USFS, Delaware, OH. A mixture of tissues representing the whole plant was combined.

text: Fagus grandifolia

text: Generic sample from Fagus grandifolia


American beech whole plant 2

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from tissues from mature tree #1506 at USFS, Delaware, OH. Tree had Beech Park Disease. A mixture of tissues representing the whole plant was combined.

text: Fagus grandifolia

text: Generic sample from Fagus grandifolia


American chestnut canker

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of innoculated, mature tree BA69. Combined tissues included stems (secondary phloem and primary periderm) wounded plus inoculated with blight fungus culture.

text: Castanea dentata

text: Generic sample from Castanea dentata


American chestnut healthy stem 1

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of healthy, mature tree AC 4T7, Wisneiwski genotype from CAES. Combined tissues includedHealthy stem samples of bark, vascular cambium and wood attached to each other.

text: Castanea dentata

text: Generic sample from Castanea dentata


American chestnut healthy stem 2

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of healthy, mature tree AC 1T6, Watertown genotype from CAES. Combined tissues from healthy stem included of bark, vascular cambium and wood attached to each other.

text: Castanea dentata

text: Generic sample from Castanea dentata


American chestnut whole plant 1

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of healthy, mature tree AC 4T7, Wisneiwski genotype from CAES. A mixture of tissues representing the whole plant was combined.

text: Castanea dentata

text: Generic sample from Castanea dentata


American chestnut whole plant 2

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of healthy, mature tree AC 1T6, Watertown genotype from CAES. A mixture of tissues representing the whole plant was combined.

text: Castanea dentata

text: Generic sample from Castanea dentata


Chinese chestnut canker

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of tree GR119, Nanking genotype. Combined tissues included stems (secondary phloem and primary periderm) wounded plus inoculated with blight fungus culture.

text: Castanea mollissima

text: Generic sample from Castanea mollissima


Chinese chestnut healthy stem 1

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of tree BX316 rootstock, Vanuxem clone. Combined tissues from healthy stem include bark, vascular cambium and wood attached to each other.

text: Castanea mollissima

text: Generic sample from Castanea mollissima


Chinese chestnut healthy stem 2

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of trees GR119 and BX316. Combined tissues from healthy stem include bark, vascular cambium and wood attached to each other.

text: Castanea mollissima

text: Generic sample from Castanea mollissima


Chinese chestnut whole plant 1

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of trees GR119 and BX316. Combined tissues from whole plant include bark, vascular cambium and wood attached to each other, immature and blooming catkins, leaves, twigs and buds.

text: Castanea mollissima

text: Generic sample from Castanea mollissima


Chinese chestnut whole plant 2

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of tree BX316. Clone is unknown; rootstock and scion are different genotypes. Combined tissues from whole plant include bark, vascular cambium and wood attached to each other, immature and blooming catkins, leaves, twigs and buds.

text: Castanea mollissima

text: Generic sample from Castanea mollissima


Red Oak Above Ground

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of a mature tree on Penn State campus. Combined tissues include flowers, fruit, stems, buds, phloem and cambium.

text: Quercus rubra

text: Generic sample from Quercus rubra


Red Oak Below Ground

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from roots of a seedling.

text: Quercus rubra

text: Generic sample from Quercus rubra


White Oak Above Ground

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from combined tissues of a mature tree in Penn State arboretum. Combined tissues include flowers, fruit, stems, buds, phloem and cambium.

text: Quercus alba

text: Generic sample from Quercus alba


White Oak Below Ground

text: Clemson University Genomics Institute

text: live

text: Generic

text: ESTS derived from roots of a a mature tree in Penn State arboretum.

text: Quercus alba

text: Generic sample from Quercus alba


text: Genoscope

text: live

text: Generic

text: Acinetobacter baylyi ADP1

text: Acinetobacter baylyi ADP1

text: Generic sample from Acinetobacter sp. ADP1


text: Genoscope

text: live

text: Generic

text: Mycoplasma agalactiae PG2

text: Mycoplasmopsis agalactiae PG2

text: Generic sample from Mycoplasma agalactiae PG2

text: type strain of Mycoplasma agalactiae

characteristic: type material


Gallus gallus

text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: reference genome derived from female RJF #256 from the inbred line UCD 001

text: UCD 001

characteristic: inbred line

text: RJF #256

characteristic: individual name

text: Gallus gallus

text: female

characteristic: sex

text: Gallus gallus; red junglefowl RJF #256


name: HT-29 cells 5'-end transcriptome sample 1

characteristic: External Id

text: University of Tokyo, Graduate School of Frontier Science

text: live

text: Generic

characteristic: cell-line

text: HT-29 cells were cultured in RPMI1640 or McCoy's 5A medium supplemented with 10% fetal bovine serum. Cells were incubated with PBS for 72 h;the culture medium was replaced with fresh medium plus PBS 24 h after initiation of incubation.Total RNA for 5'SAGE analysis and for RT-PCR was extracted using RNA-Bee. The quality of total RNA from each cell line was analyzed using an Agilent 2100 Bioanalyzer.

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


name: HT-29 cells 5'-end transcriptome sample 2

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: HT-29 cells were cultured in RPMI1640 or McCoy's 5A medium supplemented with 10% fetal bovine serum. Cells were incubated with 5Aza (Sigma) (500nM) for 72 h; the culture medium was replaced with fresh medium plus drug 24 h after initiation of incubation. Total RNA for 5'SAGE analysis and for RT-PCR was extracted using RNA-Bee. The quality of total RNA from each cell line was analyzed using an Agilent 2100 Bioanalyzer.

text: Homo sapiens

text: Generic sample from Homo sapiens


Callorhinchus milii

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Australia: Tasmania; Hobart

characteristic: country

characteristic: isolate

text: Callorhinchus milii

text: male

text: testis

characteristic: tissue-type

text: Generic sample from Callorhinchus milii


name: Caenorhabditis elegans mid-L2 RNA sample 1

text: University of Washington Genome Sciences

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Animals were synchronized by treating a mixed population with bleach to collect embryos. The embryos were incubated without food, causing the larvae to arrest at the L1 stage upon hatching. Starved L1 larvae were plated in the presence of food and raised at 25 degrees Celsius. Staging was determined by examining a subset of animals under Nomarski optics at intervals for vulval and germline development. Animals were collected at mid-L2 stage and washed in S basal buffer. Exact times for growth after plating of starved L1s (all at 25 degrees C) were as follows: L2 worms were grown for 17.75 hours (Pn.p cells visible but not divided, gonad just starting to proliferate).

characteristic: description

text: Caenorhabditis elegans

characteristic: organism

text: Generic sample from Caenorhabditis elegans


name: Caenorhabditis elegans YA (pre-gravid) RNA sample 1

text: live

text: Generic

text: Animals were synchronized by treating a mixed population with bleach to collect embryos. The embryos were incubated without food, causing the larvae to arrest at the L1 stage upon hatching. Starved L1 larvae were plated in the presence of food and raised at 25 degrees Celsius. Staging was determined by examining a subset of animals under Nomarski optics at intervals for vulval and germline development. Animals were collected at mid-YA stage and washed in S basal buffer. Exact times for growth after plating of starved L1s (all at 25 degrees C) were as follows: Young Adult for 46 hours (vulvae fully formed and oocytes present in gonad, but no embryos).

text: Caenorhabditis elegans


name: Caenorhabditis elegans mid L3 RNA sample 1

text: live

text: Generic

text: Animals were synchronized by treating a mixed population with bleach to collect embryos. The embryos were incubated without food, causing the larvae to arrest at the L1 stage upon hatching. Starved L1 larvae were plated in the presence of food and raised at 25 degrees Celsius. Staging was determined by examining a subset of animals under Nomarski optics at intervals for vulval and germline development. Animals were collected at mid-L3 stage and washed in S basal buffer. Exact times for growth after plating of starved L1s (all at 25 degrees C) were as follows: L3 for 26.75 hours (Pn.p cells divided once or twice; gonad just starting to turn up).

text: Caenorhabditis elegans


name: Caenorhabditis elegans mid L4 RNA sample 1

text: live

text: Generic

text: Animals were synchronized by treating a mixed population with bleach to collect embryos. The embryos were incubated without food, causing the larvae to arrest at the L1 stage upon hatching. Starved L1 larvae were plated in the presence of food and raised at 25 degrees Celsius. Staging was determined by examining a subset of animals under Nomarski optics at intervals for vulval and germline development. Animals were collected at mid-L4 stage and washed in S basal buffer. Exact times for growth after plating of starved L1s (all at 25 degrees C) were as follows: L4 for 34.25 hours (vulvae are in Christmas tree stage gonad has passed bend, sperm are present)

text: Caenorhabditis elegans


Australian Senecio madagascariensis

text: School of Integrative biology, University of Queensland

text: live

text: Generic

text: As a first step towards understanding the molecular basis for adaptive evolution in invasive species, we have generated one normalized and two subtractive EST libraries sequenced using 454 pyrosequencing representing one native South African and one invasive Australian population of S. madagascariensis. The contigs generated from these ESTs will be mined for microsatellites which will be used for examining if particular genomic regions are the targets of selection. Contigs will also be used to design a microarray to test if particular gene expression changes are associated with invasiveness.

text: Australian

characteristic: ecotype

text: Senecio madagascariensis

text: Generic sample from Senecio madagascariensis


South African Senecio madagascariensis

characteristic: External Id

text: live

text: Generic

text: South African

text: Senecio madagascariensis


Ciona intestinalis_Whole_tss

text: University of Tokyo, Medical Genome Sciences

text: live

text: Generic

text: Ciona intestinalis_Whole_tss

text: Ciona intestinalis

text: Generic sample from Ciona intestinalis


Ciona intestinalis_Gill_tss

text: live

text: Generic

text: Ciona intestinalis_Gill_tss

text: Ciona intestinalis

text: Generic sample from Ciona intestinalis


Ciona intestinalis_Ovary_tss

text: live

text: Generic

text: Ciona intestinalis_Ovary_tss

text: Ciona intestinalis

text: Generic sample from Ciona intestinalis


text: RIKEN Omics Science Center

text: live

text: Generic

text: Hepatocellular carcinoma

text: Homo sapiens

text: Generic sample from Homo sapiens


characteristic: Coriell plate

characteristic: Family ID

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA12097

text: Homo sapiens

text: CEU

characteristic: population

text: female

characteristic: sex

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA17962

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

text: live

characteristic: INSDC status

text: HapMap

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Human HapMap individual NA17963

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA17965

characteristic: description

text: Homo sapiens

characteristic: organism

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

characteristic: External Id

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17966

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: Family ID

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17967

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17968

text: Homo sapiens

text: CHD

characteristic: population

text: female

characteristic: sex

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA17969

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: HapMap

text: Human HapMap individual NA17970

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA17971

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

text: live

characteristic: INSDC status

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA17972

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

characteristic: SRA accession

text: Human HapMap individual NA17973

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17974

characteristic: description

text: Homo sapiens

characteristic: organism

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

characteristic: External Id

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17975

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Family ID

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17976

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17977

text: Homo sapiens

text: CHD

characteristic: population

text: female

characteristic: sex

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA17978

text: Homo sapiens

text: CHD

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

text: Human HapMap individual NA17979

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA17980

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA17981

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Human HapMap individual NA17982

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA17983

characteristic: description

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17986

text: Homo sapiens

characteristic: organism

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: External Id

characteristic: Family ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17987

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17988

text: Homo sapiens

text: CHD

characteristic: population

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA17989

text: Homo sapiens

text: CHD

text: male

characteristic: sex

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

text: Human HapMap individual NA17990

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA17991

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA17992

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Human HapMap individual NA17993

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA17994

characteristic: description

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17995

text: Homo sapiens

characteristic: organism

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: External Id

characteristic: Family ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17996

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA17997

text: Homo sapiens

text: CHD

characteristic: population

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA17998

text: Homo sapiens

text: CHD

text: female

characteristic: sex

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

text: Human HapMap individual NA17999

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA18000

text: Homo sapiens

text: CHD

text: HapMap sample from Homo sapiens


text: NCBI

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA18101

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Human HapMap individual NA18102

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA18103

characteristic: description

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18104

text: Homo sapiens

characteristic: organism

text: CHD

text: HapMap sample from Homo sapiens


characteristic: External Id

characteristic: Family ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18105

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18106

text: Homo sapiens

text: CHD

characteristic: population

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA18107

text: Homo sapiens

text: CHD

text: female

characteristic: sex

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

text: Human HapMap individual NA18108

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA18109

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA18110

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Human HapMap individual NA18111

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA18112

characteristic: description

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18113

text: Homo sapiens

characteristic: organism

text: CHD

text: HapMap sample from Homo sapiens


characteristic: External Id

characteristic: Family ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18114

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18115

text: Homo sapiens

text: CHD

characteristic: population

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA18116

text: Homo sapiens

text: CHD

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18117

text: Homo sapiens

text: CHD

text: male

characteristic: sex

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: HapMap

text: Human HapMap individual NA18118

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA18119

text: Homo sapiens

text: CHD

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA18120

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

characteristic: SRA accession

text: Human HapMap individual NA18122

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18123

characteristic: description

text: Homo sapiens

text: CHD

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18124

text: Homo sapiens

characteristic: organism

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Family ID

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18125

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA18126

text: Homo sapiens

text: CHD

characteristic: population

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18127

text: Homo sapiens

text: CHD

text: male

characteristic: sex

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: HapMap

text: Human HapMap individual NA18128

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA18129

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA18130

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

characteristic: SRA accession

text: Human HapMap individual NA18131

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18132

characteristic: description

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18133

text: Homo sapiens

characteristic: organism

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Family ID

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18134

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA18135

text: Homo sapiens

text: CHD

characteristic: population

text: female

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18136

text: Homo sapiens

text: CHD

text: male

characteristic: sex

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: HapMap

text: Human HapMap individual NA18138

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA18139

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA18140

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

characteristic: SRA accession

text: Human HapMap individual NA18141

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18143

characteristic: description

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18144

text: Homo sapiens

characteristic: organism

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18145

text: Homo sapiens

text: CHD

text: HapMap sample from Homo sapiens


characteristic: Family ID

text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA18146

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18147

text: Homo sapiens

text: CHD

characteristic: population

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

text: Human HapMap individual NA18148

text: Homo sapiens

text: CHD

text: female

characteristic: sex

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA18149

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

text: live

characteristic: INSDC status

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA18150

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

text: Human HapMap individual NA18151

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens

characteristic: title


characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA18152

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18153

characteristic: description

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18154

text: Homo sapiens

characteristic: organism

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: Family ID

text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA18155

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18156

text: Homo sapiens

text: CHD

characteristic: population

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

text: Human HapMap individual NA18157

text: Homo sapiens

text: CHD

text: female

characteristic: sex

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA18158

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

text: live

characteristic: INSDC status

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA18159

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

text: Human HapMap individual NA18160

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens

characteristic: title


characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA18161

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18162

characteristic: description

text: Homo sapiens

text: CHD

text: female

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18163

text: Homo sapiens

characteristic: organism

text: CHD

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA18164

text: Homo sapiens

text: CHD

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

characteristic: Family ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18166

text: Homo sapiens

text: CHD

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

characteristic: INSDC first public

text: live

text: Generic

text: Han Chinese in Beijing, China

characteristic: Population Description

text: EAS

characteristic: Super Population Code

text: East Asian

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA18525

text: Homo sapiens

text: CHB

characteristic: population

text: female

text: Coriell GM18525


characteristic: Coriell plate

text: NCBI

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text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Han Chinese in Beijing, China

text: EAS

text: East Asian

text: Human HapMap individual NA18527

text: Homo sapiens

text: CHB

text: female

characteristic: sex

text: Coriell GM18527

characteristic: title


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: Han Chinese in Beijing, China

characteristic: SRA accession

text: EAS

text: East Asian

text: Human HapMap individual NA18528

characteristic: description

text: Homo sapiens

characteristic: organism

text: CHB

text: female

text: Coriell GM18528


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

characteristic: INSDC first public

text: live

text: Generic

text: Han Chinese in Beijing, China

characteristic: Population Description

text: EAS

characteristic: Super Population Code

text: East Asian

characteristic: Super Population Description

text: Human HapMap individual NA18531

text: Homo sapiens

text: CHB

text: female

text: Coriell GM18531


characteristic: Coriell plate

text: NCBI

characteristic: INSDC last update

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text: live

characteristic: INSDC status

text: Generic

text: Han Chinese in Beijing, China

text: EAS

text: East Asian

characteristic: culture collection

text: Human HapMap individual NA18533

text: Homo sapiens

text: CHB

characteristic: population

text: female

text: Coriell GM18533


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Han Chinese in Beijing, China

text: EAS

text: East Asian

text: Human HapMap individual NA18535

text: Homo sapiens

text: CHB

text: female

characteristic: sex

text: Coriell GM18535

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characteristic: Coriell panel

characteristic: DNA id

text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: Han Chinese in Beijing, China

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text: EAS

text: East Asian

text: Human HapMap individual NA18538

characteristic: description

text: Homo sapiens

characteristic: organism

text: CHB

text: female

text: Coriell GM18538


characteristic: Coriell plate

text: NCBI

characteristic: INSDC first public

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text: live

text: Generic

text: Han Chinese in Beijing, China

characteristic: Population Description

text: EAS

characteristic: Super Population Code

text: East Asian

characteristic: Super Population Description

text: Human HapMap individual NA18539

text: Homo sapiens

text: CHB

text: female

text: Coriell GM18539


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Han Chinese in Beijing, China

text: EAS

text: East Asian

characteristic: culture collection

text: Human HapMap individual NA18541

text: Homo sapiens

text: CHB

characteristic: population

text: female

text: Coriell GM18541


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Han Chinese in Beijing, China

text: EAS

text: East Asian

text: Human HapMap individual NA18553

text: Homo sapiens

text: CHB

text: female

characteristic: sex

text: Coriell GM18553

characteristic: title


characteristic: Coriell plate

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Han Chinese in Beijing, China

characteristic: SRA accession

text: EAS

text: East Asian

text: Human HapMap individual NA18560

characteristic: description

text: Homo sapiens

characteristic: organism

text: CHB

text: female

text: Coriell GM18560


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC last update

text: live

text: Generic

text: Han Chinese in Beijing, China

characteristic: Population Description

text: EAS

characteristic: Super Population Code

text: East Asian

characteristic: Super Population Description

text: Human HapMap individual NA18565

text: Homo sapiens

text: CHB

text: female

text: Coriell GM18565


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Han Chinese in Beijing, China

text: EAS

text: East Asian

characteristic: culture collection

text: Human HapMap individual NA18567

text: Homo sapiens

text: CHB

characteristic: population

text: female

text: Coriell GM18567


characteristic: Coriell plate

text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Human HapMap individual NA18568

text: Homo sapiens

text: CHB

text: HapMap sample from Homo sapiens

characteristic: title


characteristic: External Id

text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA18569

characteristic: description

text: Homo sapiens

characteristic: organism

text: CHB

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC last update

text: live

text: Generic

text: Han Chinese in Beijing, China

characteristic: Population Description

text: EAS

characteristic: Super Population Code

text: East Asian

characteristic: Super Population Description

text: Human HapMap individual NA18574

text: Homo sapiens

text: CHB

text: female

characteristic: sex

text: Coriell GM18574


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA18575

text: Homo sapiens

text: CHB

characteristic: population

text: HapMap sample from Homo sapiens