text: Forestry and Agricultural Biotechnology Institute

text: live

text: Generic

text: Uninfected avocado R0.09 rootstock

text: Persea americana

text: Masters libraries


Glycine max microRNA sequencing

status: PUBLIC

characteristic: External Id

text: Jilin Agriculture University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Glycine max

characteristic: organism

text: Glycine max microRNA sequencing

characteristic: title


text: Duke University

text: live

text: Generic

text: Drosophila pseudoobscura pseudoobscura


TreeLine

text: Duke University

text: live

text: Generic

text: Drosophila pseudoobscura pseudoobscura

text: TreeLine


text: Duke University

text: live

text: Generic

text: Drosophila pseudoobscura pseudoobscura

text: Mather32_Drosophila pseudoobscura


text: Duke University

text: live

text: Generic

text: Drosophila pseudoobscura pseudoobscura

text: American Fork Canyon 12


text: Duke University

text: live

text: Generic

text: Drosophila pseudoobscura pseudoobscura

text: Mount St. Helena 24


text: Duke University

text: live

text: Generic

text: Drosophila pseudoobscura pseudoobscura

text: Mount St. Helena 9


SCI-female

text: Duke University

text: live

text: Generic

text: Drosophila pseudoobscura pseudoobscura

text: Santa Cruz Island-Female


text: Duke University

text: live

text: Generic

text: Drosophila lowei


Drosophila pseudoobscura bogotana-TORO

text: Duke University

text: live

text: Generic

text: Drosophila pseudoobscura bogotana

text: Drosophila pseudoobscura bogotana-TORO


text: Dunnlab at Brown University, Department of Ecology and Evolutionary Biology

text: live

text: Generic

text: Trizol extraction followed by DNase1 digestion on RNeasy column. First strand cDNA processed with SuperScriptII from Invitrogen then PCR to prepare for 454.

characteristic: description

text: Chaetopleura apiculata

text: 454 Chaetopleura apiculata transcriptome


text: live

text: Generic

text: Extracted with RNeasy kit from tissue, first strand cDNA processed with SuperScriptII from Invitrogen then PCR to prepare for 454.

text: Laevipilina hyalina

text: 454 Laevipilina hyalina transcriptome


name: Drosophila persimilis-Santa Cruz Island female

text: Duke University

text: live

text: Generic

text: Drosophila persimilis


name: Drosophila persimilis Santa Cruz Island Male

text: Duke University

text: live

text: Generic

text: Drosophila persimilis


text: live

text: Generic

text: Total RNA extracted with Trizol, then RNeasy and on column DNase1. Total RNA sent to Roche where they did sample prep where they extract the mRNA from total RNA and prepared the mRNA for 454 sequencing.

text: Lingula anatina

text: 454 Lingula anatina transcriptome


text: live

text: Generic

text: RNA was extracted with Trizol. RNeasy cleanup with DNase1 digestion, then processed with one round of DYnabeads

text: Nautilus pompilius

text: 454 Nautilus pompilius transcriptome


text: live

text: Generic

text: Total RNA extracted with Trizol, then RNeasy and on column DNase1. Total RNA was sent to Roche and they did the sample prep where they extract the mRNA from total RNA and prepared the mRNA for 454 sequencing.

text: Perotrochus lucaya

text: 454 Perotrochus lucaya transcriptome


text: live

text: Generic

text: Siphonaria pectinata

text: 454 Siphonaria pectinata transcriptome


text: live

text: Generic

text: Yoldia limatula

text: 454 Yoldia limatula transcriptome


text: live

text: Generic

text: Solemya velum

text: Illumina Solemya velum transcriptome


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: Each microcosm contained 400 g soil, maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 3 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Non-amended control, day 3, replicate 2


text: live

text: Generic

text: uncultured bacterium

text: Non-amended control, day 3, replicate 3


text: live

text: Generic

text: Each microcosm contained 400 g soil, maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 7 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Non-amended control, day 7, replicate 1


text: live

text: Generic

text: uncultured bacterium

text: Non-amended control, day 7, replicate 2


text: live

text: Generic

text: uncultured bacterium

text: Non-amended control, day 7, replicate 3


text: live

text: Generic

text: Each microcosm contained 400 g soil, maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 14 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Non-amended control, day 14, replicate 1


text: live

text: Generic

text: uncultured bacterium

text: Non-amended control, day 14, replicate 2


text: Institute of Himalayan Bioresource Technology

text: live

text: Generic

tag: attribute

characteristic: cultivar

text: Leaf

characteristic: organ

text: Camellia sinensis

text: 4th to 6th Leaf

characteristic: tissue-type

text: Camellia sinensis drought suppression subtractive hybridization library

text: Plasmid

text: pGEMT-Easy vector

characteristic: vector


text: Universidade do Algarve

text: live

text: Generic

text: Adult plant

characteristic: dev-stage

text: leaf

text: Brassica oleracea

text: Hind III

text: Hind III

text: convar. italica

characteristic: strain

text: leaf

text: Bo-LGGI

text: BAC


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: uncultured bacterium

text: Non-amended control, day 14, replicate 3


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Each microcosm contained 400 g soil, maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 28 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Non-amended control, day 28, replicate 1


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: uncultured bacterium

text: Non-amended control, day 28 replicate 2


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: uncultured bacterium

text: Non-amended control, day 28, replicate 3


text: live

text: Generic

characteristic: SRA accession

text: This microcosm contained 400 g soil and 2.5% (w/w) mustard seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 3 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

characteristic: organism

text: Mustard seed-amended microcosm, day 3, replicate 1


text: live

text: Generic

characteristic: description

text: uncultured bacterium

text: Mustard seed-amended microcosm, day 3, replicate 2

characteristic: title


text: live

text: Generic

text: uncultured bacterium

text: Mustard seed-amended microcosm, day 3, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) mustard seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 7 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Mustard seed-amended microcosm, day 7, replicate 1


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: uncultured bacterium

text: Mustard seed-amended microcosm, day 7, replicate 2


text: live

text: Generic

text: uncultured bacterium

text: Mustard seed-amended microcosm, day 7, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) mustard seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 14 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Mustard seed-amended microcosm, day 14, replicate 1


text: live

text: Generic

text: uncultured bacterium

text: Mustard seed-amended microcosm, day 14, replicate 2


text: live

text: Generic

text: uncultured bacterium

text: Mustard seed-amended microcosm, day 14, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) mustard seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 28 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Mustard seed-amended microcosm, day 28 replicate 1


text: live

text: Generic

text: uncultured bacterium

text: Mustard seed-amended microcosm, day 28, replicate 2


text: live

text: Generic

text: uncultured bacterium

text: Mustard seed-amended microcosm, day 28, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) dried, chipped sorghum-sudangrass biomass (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 3 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Sorghum-amended microcosm, day 3, replicate 1


text: live

text: Generic

text: uncultured bacterium

text: Sorghum-amended microcosm, day 3, replicate 2


text: live

text: Generic

text: uncultured bacterium

text: Sorghum-amended microcosm, day 3, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) dried, chipped sorghum-sudangrass biomass (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 7 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Sorghum-amended microcosm, day 7, replicate 1


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: uncultured bacterium

text: Sorghum-amended microcosm, day 7, replicate 2


text: live

text: Generic

text: uncultured bacterium

text: Sorghum-amended microcosm, day 7, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) dried, chipped sorghum-sudangrass biomass (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 14 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Sorghum-amended microcosm, day 14, replicate 1


text: live

text: Generic

text: uncultured bacterium

text: Sorghum-amended microcosm, day 14, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) dried, chipped sorghum-sudangrass biomass (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 28 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Sorghum-amended microcosm, day 28, replicate 1


text: live

text: Generic

text: uncultured bacterium

text: Sorghum-amended microcosm, day 28, replicate 2


text: live

text: Generic

text: uncultured bacterium

text: Sorghum-amended microcosm, day 28, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) flax seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 3 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 3, replicate 1


text: live

text: Generic

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 3, replicate 2


text: live

text: Generic

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 3, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) flax seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 7 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 7, replicate 1


text: live

text: Generic

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 7, replicate 2


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 7, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) flax seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 14 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 14, replicate 1


text: live

text: Generic

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 14, replicate 2


text: live

text: Generic

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 14, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) flax seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 28 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 28, replicate 1


text: live

text: Generic

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 28, replicate 2


text: live

text: Generic

text: uncultured bacterium

text: Flax seed meal-amended microcosm, day 28, replicate 3


text: University of Tokyo, Graduate School of Frontier Science, Dept. of Computational Biology

text: live

text: Generic

text: CD4 naive T cells were isolated from spleens of DO11.10 Tg mice.

text: Mus musculus domesticus

text: CD4 naive T cells


text: live

text: Generic

text: CD4 memory T cells were generated from the effector T cells transferred intravenously into normal syngeneic BALB/c recipient mice for 4 weeks.

text: Mus musculus domesticus

text: CD4 memory T cells


text: live

text: Generic

text: CD4 effector T cells were generated from the naive CD4 T cells stimulated with an OVA peptide (residues 323-339; ISQAVHAAHAEINEAGRD) plus APC for 5 d in vitro.

text: Mus musculus domesticus

text: CD4 effector T cells


HA-H3.3 single round ChIP

text: National institute of Biological Science, Beijing

text: live

text: Generic

text: The T-Rex HeLa Cells (Invitrogen) are cultured in DMEM (FBS) containing 10% new born calf serum. T-Rex cells were transfected with pCDNA4-TO-FLAG-H3.3 by Lipofectamine 2000, and stably transfected clones were selected against Zeocin (100µg/ml, Invitrogen). Stable clones that display minimum leaky expression and can be effectively induced by tetracycline were chosen for further transfection. The stable cell generated were further transfected with pVRXR-puromycin and selected against puromycin (1µg/ml). The above clones were subsequently transfected with pIND-hygromycin-HA-H3.3, selected against hygromicin. The final stable cell line is maintained with Zeocin, Blasticidin, puromycin and hygromycin. For splitting assay, tetracycline was added for 48 hours for HA-H3.3 expression. Then cells was collected by trypsin and washed with cold PBS for 3 times. Cells were reseeded to medium. 24hrs later Ponasterone A was added for inducing HA-H3.3 expression. 24 hours later, collect cells by trypsin and washed with PBS for 2 times. Cells were pellet and frozen at -80°C for later processing. Cells were induced with Ponasterone A for 48 hr for HA-H3.3 expression. Then cells were digested by trypsin and washed with cold PBS for 3 times and then were reseeded to normal medium. 24 hr. later tetracycline was added for Flag-H3.3 induction. After a 24-hr induction of Flag-H3.3, cells were collected and frozen at -80 for later processing. This sample is the ChIPed DNA by anti-HA antibody from Sigma Co. LTD. (E6779).

text: Homo sapiens

text: anti-HA ChIPed HA-H3.3 from dual inducible HeLa cells


Flag-HA H3.3 sequential ChIP

text: live

text: Generic

text: The T-Rex HeLa Cells (Invitrogen) are cultured in DMEM (FBS) containing 10% new born calf serum. T-Rex cells were transfected with pCDNA4-TO-FLAG-H3.3 by Lipofectamine 2000, and stably transfected clones were selected against Zeocin (100µg/ml, Invitrogen). Stable clones that display minimum leaky expression and can be effectively induced by tetracycline were chosen for further transfection. The stable cell generated were further transfected with pVRXR-puromycin and selected against puromycin (1µg/ml). The above clones were subsequently transfected with pIND-hygromycin-HA-H3.3, selected against hygromicin. The final stable cell line is maintained with Zeocin, Blasticidin, puromycin and hygromycin. For splitting assay, tetracycline was added for 48 hours for HA-H3.3 expression. Then cells was collected by trypsin and washed with cold PBS for 3 times. Cells were reseeded to medium. 24hrs later Ponasterone A was added for inducing HA-H3.3 expression. 24 hours later, collect cells by trypsin and washed with PBS for 2 times. Cells were pellet and frozen at -80°C for later processing. Cells were induced with Ponasterone A for 48 hr for HA-H3.3 expression. Then cells were digested by trypsin and washed with cold PBS for 3 times and then were reseeded to normal medium. 24 hr. later tetracycline was added for Flag-H3.3 induction. After a 24-hr induction of Flag-H3.3, cells were collected and frozen at -80 for later processing. This sample is the ChIPed DNA by anti-Flag Ab (Sigma, A2220) and anti-HA Ab (Sigma, E6779) sequentially.

text: Homo sapiens

text: Flag-HA H3.3 sequential ChIP from dual inducible HeLa cells


HeLa polyA mRNA

text: live

text: Generic

text: Total RNA was extracted by TRIzol (Invitrogen), and mRNA-seq library was generated following standard protocol. Briefly, total RNA was enriched for poly(A) RNA by two successive rounds of oligo(dT) selection using Dynabeads* Oligo(dT)25 (invitrogen) and the poly(A) RNA was then fragmented.

text: Homo sapiens

text: polyA mRNA from dual inducible HeLa cells


HeLA-mono-nucleosomes

text: live

text: Generic

text: Mono nucleosomes were prepared by Micrococcal Nuclease digestion as described. Briefly, cells were suspended by TM buffer for 5 minutes on ice and NP40 was added to 1.5% and hold on ice for 10mins, and nuclei were pellet, suspend and washed once with TM buffer. Cacl2 was added to 1mM and Micrococcal Nuclease digestion (10U/107 cells) was carried out for 80 min at 37*C to yield mostly mono nucleosomes. Digestion were stop by adding EGTA to 2mM following incubation on ice for 10 min. Mono nucleosomes were pellet and washed by TM buffer and resolved by STM600 at 4*C overnight.

text: Homo sapiens

text: MNase digested HeLa mono nucleosomes


Reversely induced Flag-H3.3 ChIP

text: live

text: Generic

text: Similar to Flag-H3.3 ChIP, but the order of induction of Flag-H3.3 and HA-H3.3 expression was reversed.

text: Homo sapiens

text: Flag-H3.3 ChIP in Reversely induced HeLa cells


Reversely induced HA-H3.3 ChIP

text: live

text: Generic

text: Similar to HA-H3.3 ChIP, but the order of induction of Flag-H3.3 and HA-H3.3 expression was reversed.

text: Homo sapiens

text: HA-H3.3 ChIP in Reversely induced HeLa cells


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Hoatzin crop microbiome epithelium fraction 12

text: metagenome

characteristic: sample number

text: Generic sample from metagenome


text: Developmental Genomics, LCDB, NIDDK, NIH

text: live

text: Generic

text: 5-8 days post eclosion

characteristic: age

text: Adult

characteristic: developmental stage

text: Drosophila pseudoobscura

text: 75 bp paired end

characteristic: read length

text: female

characteristic: sex

text: Carcass minus reproductive tract

text: Carcass minus reproductive tract

characteristic: tissue

text: Dpse_0121.94_Female_Carcass_min_Reproductive_Tract_Replicate_1


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila pseudoobscura

text: 75 bp paired end

text: female

text: Carcass minus reproductive tract

characteristic: strain

text: Carcass minus reproductive tract

text: Dpse_0121.94_Female_Carcass_min_Reproductive_Tract_Replicate_2


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila pseudoobscura

text: 75 bp paired end

text: male

text: Carcass minus reproductive tract

text: Carcass minus reproductive tract

text: Dpse_0121.94_Male_Carcass_min_Reproductive_Tract_Replicate_1


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 5-8 days post eclosion

text: Adult

text: Drosophila pseudoobscura

text: 75 bp paired end

text: male

text: Carcass minus reproductive tract

text: Carcass minus reproductive tract

text: Dpse_0121.94_Male_Carcass_min_Reproductive_Tract_Replicate_2


text: live

text: Generic

characteristic: SRA accession

text: 5-8 days post eclosion

text: Adult

text: Drosophila pseudoobscura

characteristic: organism

text: 75 bp paired end

text: female

text: Dissected Ovaries and Reproductive Tract

text: Dpse_0121.94_Ovaries_and_Reproductive_Tract_Replicate_1


text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila pseudoobscura

text: 75 bp paired end

text: female

text: Dpse_0121.94_Ovaries_and_Reproductive_Tract_Replicate_2

characteristic: title


text: live

text: Generic

text: 5-8 days post eclosion

characteristic: age

text: Adult

text: Drosophila pseudoobscura

text: 75 bp paired end

text: male

text: Dissected Testes and Reproductive Tract

text: Dissected Testes and Reproductive Tract

text: Dpse_0121.94_Testes_and_Reproductive_Tract_Replicate_1


text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

characteristic: developmental stage

text: Drosophila pseudoobscura

text: 75 bp paired end

text: male

text: Dissected Testes and Reproductive Tract

text: Dissected Testes and Reproductive Tract

text: Dpse_0121.94_Testes_and_Reproductive_Tract_Replicate_2


text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila simulans

text: 101 bp paired end

characteristic: read length

text: female

text: Carcass minus reproductive tract

text: Carcass minus reproductive tract

text: Dsim_0251.199_Female_Carcass_min_Reproductive_Tract_Replicate_1


text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila simulans

text: 75 bp paired end

text: female

characteristic: sex

text: Carcass minus reproductive tract

text: Carcass minus reproductive tract

text: Dsim_0251.199_Female_Carcass_min_Reproductive_Tract_Replicate_2


text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila simulans

text: 101 bp paired end

text: male

text: Carcass minus reproductive tract

text: Carcass minus reproductive tract

characteristic: tissue

text: Dsim_0251.199_Male_Carcass_min_Reproductive_Tract_Replicate_1


characteristic: External Id

text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila simulans

text: 101 bp paired end

text: male

text: Carcass minus reproductive tract

text: Carcass minus reproductive tract

text: Dsim_0251.199_Male_Carcass_min_Reproductive_Tract_Replicate_2


characteristic: INSDC center name

text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila simulans

text: 101 bp paired end

text: female

text: Dsim_0251.199_Ovaries_and_Reproductive_Tract_Replicate_1


text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila simulans

text: 75 bp paired end

text: female

characteristic: strain

text: Dsim_0251.199_Ovaries_and_Reproductive_Tract_Replicate_2


characteristic: INSDC first public

text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila simulans

text: 101 bp paired end

text: male

text: Dissected Testes and Reproductive Tract

text: Dissected Testes and Reproductive Tract

text: Dsim_0251.199_Testes_and_Reproductive_Tract_Replicate_1_1


text: Developmental Genomics, LCDB, NIDDK, NIH

characteristic: INSDC last update

text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila simulans

text: 101 bp paired end

text: male

text: Dissected Testes and Reproductive Tract

text: Dissected Testes and Reproductive Tract

text: Dsim_0251.199_Testes_and_Reproductive_Tract_Replicate_1_2


characteristic: INSDC secondary accession

text: live

text: Generic

text: 5-8 days post eclosion

text: Adult

text: Drosophila simulans

text: 101 bp paired end

text: male

text: Dissected Testes and Reproductive Tract

text: Dissected Testes and Reproductive Tract

text: Dsim_0251.199_Testes_and_Reproductive_Tract_Replicate_2


U87 glioblastoma cell-line

text: Tel Aviv University

text: live

characteristic: INSDC status

text: Generic

text: We have used Illumina's HiSeq2000 machine to perform next-generation sequencing of miRNAs from control U87 glioblastoma cell-line and compared the results to the ADAR1 and ADAR2 over-expression.

characteristic: description

text: Homo sapiens

text: human brain-originated U87 glioblastoma cell-line


text: Cancer Epigenetics, PEBC, IDIBELL

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 103 years

text: CD4+T Cells

characteristic: cell type

text: male

characteristic: gender

text: Homo sapiens

text: Caucasian

characteristic: racial classification

text: Peripheral blood

characteristic: source tissue

text: a centenarian

text: 103 year-old male Caucasian


text: Cancer Epigenetics, PEBC, IDIBELL

text: live

text: Generic

characteristic: SRA accession

text: newborn

characteristic: age

text: CD4+T Cells

text: male

text: Homo sapiens

characteristic: organism

text: Caucasian

text: Umbilical cord blood

text: a newborn

text: newborn male Caucasian

characteristic: title


characteristic: External Id

text: Pritchard, Human Genetics, University of Chicago

characteristic: INSDC center name

text: live

text: Generic

characteristic: biomaterial provider

text: lymphoblastoid cell line

text: NIGERIA

characteristic: country of origin

text: YORUBA

characteristic: ethnicity

text: Homo sapiens

text: YRI

characteristic: population

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18486


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18498


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: lymphoblastoid cell line

characteristic: cell type

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18499


text: live

text: Generic

characteristic: SRA accession

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18501


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18502


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18504


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18505


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18507


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18508


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18510


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18511


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18516


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18517


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18519


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18520


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18522


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18852


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18853


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18855


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18856


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18858


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18859


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18861


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18862


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18870


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18907


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18909


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18912


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18913


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM18916


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19092


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19093


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19098


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19099


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19101


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19114


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19116


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19119


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19127


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19130


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19131


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19137


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19138


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19140


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19141


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19143


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19144


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19147


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19152


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19153


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19159


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19160


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19171


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19190


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19192


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19193


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19200


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19201


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19203


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19204


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19206


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19207


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19209


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19210


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19222


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19223


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19225


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19238


text: live

text: Generic

text: lymphoblastoid cell line

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19239


text: live

text: Generic

text: NIGERIA

text: YORUBA

text: Homo sapiens

text: YRI

text: lymphoblastoid cell line

text: HapMap DNase Seq GM19257


text: Rothenberg, Biology, California Institute of Technology

text: live

text: Generic

text: Fetal liver precursor derived DN1

text: H3K(9,14)Ac (Millipore 06-599)

characteristic: chip antibody

text: wildtype

characteristic: genetic background

text: Mus musculus

characteristic: strain


characteristic: External Id

text: live

text: Generic

text: Fetal liver precursor derived DN2a

text: H3K(9,14)Ac (Millipore 06-599)

text: wildtype

text: Mus musculus

characteristic: organism

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: Fetal liver precursor derived DN2b

text: H3K(9,14)Ac (Millipore 06-599)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Adult thymic DN3

text: H3K(9,14)Ac (Millipore 06-599)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Adult thymic DP (pre-positive selection)

text: H3K(9,14)Ac (Millipore 06-599)

text: TCRa -/-

text: Mus musculus

text: ThyDP


text: live

text: Generic

text: Fetal liver precursor derived DN1

text: H3K4me2 (Millipore 07-030)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Fetal liver precursor derived DN2a

text: H3K4me2 (Millipore 07-030)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Fetal liver precursor derived DN2b

text: H3K4me2 (Millipore 07-030)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Adult thymic DN3

text: H3K4me2 (Millipore 07-030)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: H3K4me2 (Millipore 07-030)

text: TCRa -/-

text: Mus musculus

text: ThyDP


text: live

text: Generic

text: Fetal liver precursor derived DN1

text: H3K27me3 (Millipore 07-449)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Fetal liver precursor derived DN2a

text: H3K27me3 (Millipore 07-449)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Fetal liver precursor derived DN2b

text: H3K27me3 (Millipore 07-449)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Adult thymic DN3

text: H3K27me3 (Millipore 07-449)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: H3K27me3 (Millipore 07-449)

text: TCRa -/-

text: Mus musculus

text: ThyDP


text: live

text: Generic

text: Fetal liver precursor derived DN1

text: PU.1 (Santa cruz sc-352)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Fetal liver precursor derived DN2a

text: PU.1 (Santa cruz sc-352)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Fetal liver precursor derived DN2b

text: PU.1 (Santa cruz sc-352)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: PU.1 (Santa cruz sc-352)

text: TCRa -/-

text: Mus musculus

text: ThyDP


text: live

text: Generic

text: Fetal liver precursor derived DN1

text: GATA3 (Santa cruz sc-268)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Fetal liver precursor derived DN2b

text: GATA3 (Santa cruz sc-268)

text: wildtype

text: Mus musculus


text: live

text: Generic

text: GATA3 (Santa cruz sc-268)

text: TCRa -/-

text: Mus musculus

text: ThyDP


text: live

text: Generic

text: Fetal liver precursor derived DN1

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Fetal liver precursor derived DN2a

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Fetal liver precursor derived DN2b

text: wildtype

text: Mus musculus


text: live

text: Generic

text: Adult thymic DN3

text: wildtype

text: Mus musculus


text: live

text: Generic

text: TCRa -/-

text: Mus musculus

text: ThyDP


text: Zhang's lab (Computational Biology), Computer Science and Engineering, Washington University in St. Louis

text: live

text: Generic

text: psoriasis

characteristic: disease state

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

characteristic: tissue

text: Skin psoriasis involved 1


characteristic: INSDC first public

text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 2


characteristic: INSDC last update

text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 3


characteristic: INSDC secondary accession

text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 4


text: live

characteristic: INSDC status

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 5


text: live

text: Generic

characteristic: NCBI submission model

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 6


text: live

text: Generic

characteristic: NCBI submission package

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 7


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 8


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 9


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 10


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 11


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 12


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 13


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 14


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 15


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 16


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 17


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 18


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 19


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 20


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 21


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 22


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 23


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin psoriasis biopsy

text: skin psoriatic involved

text: Skin psoriasis involved 24


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 2


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 3


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 4


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 5


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 6


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 7


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 8


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 9


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 10


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 11


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 12


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 13


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 14


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 15


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 16


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 17


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 18


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 19


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 20


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 21


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 22


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 23


text: live

text: Generic

text: psoriasis

text: Homo sapiens

text: Skin uninvolved psoriasis biopsy

text: skin psoriatic uninvolved

text: Skin psoriasis uninvolved 24


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 1


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 2


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 3


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 4


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 5


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 6


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 7


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 8


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 9


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 10


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 11


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 12


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 13


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 14


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 15


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 16


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 17


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 18


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 19


text: live

text: Generic

text: normal

text: Homo sapiens

text: Skin biopsy

text: normal skin

text: Skin Normal 20


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: Each microcosm contained 400 g soil, maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 3 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

characteristic: description

text: Fungi

text: Non-amended control, day 3, replicate 1


text: Cancer Genomics, Centre for Haemato-Oncology, Barts Cancer Institute

text: live

text: Generic

characteristic: SRA accession

characteristic: age at diagnosis

characteristic: cytogenetic group

text: AML patient

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: AML 1


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 2


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: AML 3


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: APML 4


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: APML 5


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: AML 6


text: live

text: Generic

text: Other

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 7


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: APML 8


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood (IBM enriched)

text: Peripheral Blood (IBM enriched)

text: APML 9 (rep I)


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 10


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 11


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: APML 12


text: live

text: Generic

text: Complex

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 13


text: live

text: Generic

text: Normal Karyotype (NK)

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 14


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 15


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 16


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 17 (rep I)


text: live

text: Generic

text: Complex

text: AML patient

text: Homo sapiens

text: AML 18


text: live

text: Generic

text: Other

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 19


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: AML 21


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: AML 22


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: AML 23


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: AML 24


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 25


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood (IBM enriched)

text: Peripheral Blood (IBM enriched)

text: APML 26 (rep II)


text: live

text: Generic

text: Normal Karyotype (NK)

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 27


text: live

text: Generic

text: Normal BM

text: healthy donor

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: Normal Control 28 (rep I)


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: AML 29


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: AML 30


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 31 (rep II)


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 32


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: AML 33


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 36


text: live

text: Generic

text: Normal Karyotype (NK)

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 37


text: live

text: Generic

text: Normal Karyotype (NK)

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 38


text: live

text: Generic

text: AML patient

text: Homo sapiens

text: Peripheral Blood

text: Peripheral Blood

text: AML 39


text: live

text: Generic

text: Normal Karyotype (NK)

text: AML patient

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: AML 40


text: live

text: Generic

text: Normal BM

text: healthy donor

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow

text: Normal Control 41 (rep II)


text: live

text: Generic

text: Fungi

text: Non-amended control, day 3, replicate 2, ITS gene


text: Friedrich Miescher Institute for Biomedical Research

text: live

text: Generic

text: Embryonic Stem (ES) cells

characteristic: cell type

text: Mus musculus

text: Embryonic Stem (ES) Cells

characteristic: strain

text: ES RNA a


characteristic: External Id

text: live

text: Generic

text: Embryonic Stem (ES) cells

text: Mus musculus

characteristic: organism

text: Embryonic Stem (ES) Cells

text: ES RNA b


characteristic: INSDC center name

text: live

text: Generic

text: Neuronal progenitor (NP) cells derived from mouse embryonic stem cells

text: Mus musculus

text: NP RNA a

characteristic: title


text: live

text: Generic

text: Mus musculus

text: NP RNA b


text: live

text: Generic

text: Terminally differentiated Neurons (TN) derived from mouse embryonic stem cells

text: Mus musculus

text: TN RNA a


text: live

text: Generic

text: Mus musculus

text: TN RNA b


text: Bioinformatics, BGI-sz

text: live

text: Generic

text: Camponotus floridanus

text: queen

characteristic: sample type

text: whole individuals

text: whole body

characteristic: tissue

text: CF_Q (RNA-seq)


text: Bioinformatics, BGI-sz

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Camponotus floridanus

text: virgin queen

text: whole individuals

text: whole body

text: CF_VQ (RNA-seq)


text: Bioinformatics, BGI-sz

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Harpegnathos saltator

text: queen

text: whole individuals

text: whole body

text: HS_Q (RNA-seq)


text: Bioinformatics, BGI-sz

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Harpegnathos saltator

text: virgin queen

text: whole individuals

text: whole body

text: HS_VQ (RNA-seq)


text: live

text: Generic

characteristic: SRA accession

characteristic: description

text: Fungi

text: Non-amended control, day 3, replicate 3, ITS gene


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: Camponotus floridanus

text: queen

text: whole individuals

text: whole body

text: CF_Q (smRNA-seq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: Camponotus floridanus

text: virgin queen

text: whole individuals

text: whole body

text: CF_VQ (smRNA-seq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: Harpegnathos saltator

text: queen

text: whole individuals

text: whole body

text: HS_Q (smRNA-seq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: Harpegnathos saltator

text: virgin queen

text: whole individuals

text: whole body

text: HS_VQ (smRNA-seq)


text: live

text: Generic

text: Each microcosm contained 400 g soil, maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 7 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Non-amended control, day 7, replicate 1


text: live

text: Generic

text: Fungi

text: Non-amended control, day 7, replicate 2


text: live

text: Generic

text: Fungi

text: Non-amended control, day 7, replicate 3


text: live

text: Generic

text: Each microcosm contained 400 g soil, maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 14 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Non-amended control, day 14, replicate 1


text: live

text: Generic

text: Fungi

text: Non-amended control, day 14, replicate 2


text: live

text: Generic

text: Fungi

text: Non-amended control, day 14, replicate 3


text: live

text: Generic

text: Each microcosm contained 400 g soil, maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 28 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Non-amended control, day 28, replicate 1


text: live

text: Generic

text: Fungi

text: Non-amended control, day 28, replicate 2


text: Clarke Breast Cancer Research, Westmead Institute for Cancer Research, University of Sydney

text: live

text: Generic

characteristic: cell line

text: normal transformed

characteristic: malignant status

text: Homo sapiens

text: AB32 PR positive transformed normal breast cell line

text: Breast


text: live

text: Generic

text: adenocarcinoma

text: Homo sapiens

text: T-47D breast cancer cell line

text: Breast


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: Fungi

text: Non-amended control, day 28, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) mustard seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 3 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Mustard seed meal-amended microcosm, day 3, replicate 1


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

characteristic: disease state

text: human oral metagenome

characteristic: patient id

text: dental plaque

text: 2051 Dental Plaque

text: 2051 caries negative monozygotic twin pair of 2052

characteristic: twin pair

text: monozygotic twin

characteristic: twin type


characteristic: External Id

text: PFGRC, JCVI

characteristic: INSDC center name

text: live

text: Generic

text: caries negative

text: human oral metagenome

characteristic: organism

text: dental plaque

text: 2052 Dental Plaque

text: 2052 caries negative monozygotic twin pair of 2051

characteristic: title

text: monozygotic twin


text: PFGRC, JCVI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

characteristic: sample type

text: 2052 Dental Plaque

text: 2125 caries positive monozygotic twin pair of 2126

text: monozygotic twin


text: PFGRC, JCVI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2125 Dental Plaque

text: 2126 caries positive monozygotic twin pair of 2125

text: monozygotic twin


text: PFGRC, JCVI

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2126 Dental Plaque

text: 2309 caries negative dizygotic twin pair of 2310

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2309 Dental Plaque

text: 2310 caries negative dizygotic twin pair of 2309

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2310 Dental Plaque

text: 2954 caries positive dizygotic twin pair of 2955

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2954 Dental Plaque

text: 2955 caries positive dizygotic twin pair of 2954

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2955 Dental Plaque

text: 2011 caries positive dizygotic twin pair of 2012

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2011 Dental Plaque

text: 2012 caries positive dizygotic twin pair of 2011

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2012 Dental Plaque

text: 2061 caries positive dizygotic twin pair of 2062

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2061 Dental Plaque

text: 2062 caries negative dizygotic twin pair of 2061

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2062 Dental Plaque

text: 2169 caries negative monozygotic twin pair of 2170

text: monozygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2169 Dental Plaque

text: 2170 caries positive monozygotic twin pair of 2169

text: monozygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2170 Dental Plaque

text: 2191 caries negative monozygotic twin pair of 2192

text: monozygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2191 Dental Plaque

text: 2192 caries negative monozygotic twin pair of 2191

text: monozygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2192 Dental Plaque

text: 2226 caries positive monozygotic twin pair of 2225

text: monozygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2226 Dental Plaque

text: 2225 caries negative monozygotic twin pair of 2226

text: monozygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2225 Dental Plaque

text: 2233 caries negative dizygotic twin pair of 2234

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2233 Dental Plaque

text: 2234 caries negative dizygotic twin pair of 2233

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2234 Dental Plaque

text: 2241 caries positive dizygotic twin pair of 2242

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2241 Dental Plaque

text: 2242 caries positive dizygotic twin pair of 2241

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2242 Dental Plaque

text: 2269 caries positive dizygotic twin pair of 2270

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2269 Dental Plaque

text: 2270 caries negative dizygotic twin pair of 2269

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2270 Dental Plaque

text: 2283 caries positive dizygotic twin pair of 2284

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2283 Dental Plaque

text: 2284 caries positive dizygotic twin pair of 2283

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2284 Dental Plaque

text: 2354 caries positive dizygotic twin pair of 2355

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2354 Dental Plaque

text: 2355 caries positive dizygotic twin pair of 2354

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2355 Dental Plaque

text: 2930 caries negative dizygotic twin pair of 2931

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2930 Dental Plaque

text: 2931 caries positive dizygotic twin pair of 2930

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2931 Dental Plaque

text: 2991 caries positive dizygotic twin pair of 2992

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 2991 Dental Plaque

text: 2992 caries negative dizygotic twin pair of 2991

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 2992 Dental Plaque

text: 3214 caries positive monozygotic twin pair of 3215

text: monozygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 3214 Dental Plaque

text: 3215 caries negative monozygotic twin pair of 3214

text: monozygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 3215 Dental Plaque

text: 3306 caries positive dizygotic twin pair of 3307

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 3306 Dental Plaque

text: 3307 caries negative dizygotic twin pair of 3306

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries positive

text: human oral metagenome

text: dental plaque

text: 3307 Dental Plaque

text: 4131 caries positive dizygotic twin pair of 4132

text: dizygotic twin


text: PFGRC, JCVI

text: live

text: Generic

text: caries negative

text: human oral metagenome

text: dental plaque

text: 4131 Dental Plaque

text: 4132 caries negative dizygotic twin pair of 4131

text: dizygotic twin


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) mustard seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 3 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

characteristic: description

text: Fungi

text: Mustard seed meal-amended microcosm, day 3, replicate 2


text: live

text: Generic

text: Fungi

text: Mustard seed meal-amended microcosm, day 3, replicate 1


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryonic stem cells

characteristic: cell type

text: TAF3 KO

characteristic: genotype

text: Mus musculus

text: Embryonic stem cells, TAF3 KO

characteristic: strain

text: ES

characteristic: timepoint

text: ES Timepoint, TAF3 KO, replicate 1


characteristic: External Id

text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryonic stem cells

text: TAF3 WT

text: Mus musculus

text: Embryonic stem cells, TAF3 control

text: ES

text: ES Timepoint, TAF3 Control, replicate 1


text: Eisen, QB3, UC Berkeley

characteristic: INSDC center name

text: live

text: Generic

text: embryonic stem cells

text: TAF3 KO

text: Mus musculus

text: Embryonic stem cells, TAF3 KO

text: ES

text: ES Timepoint, TAF3 KO, replicate 2


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryonic stem cells

text: TAF3 WT

text: Mus musculus

characteristic: organism

text: Embryonic stem cells, TAF3 control

text: ES

text: ES Timepoint, TAF3 Control, replicate 2


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryoid body day 3

text: TAF3 KO

text: Mus musculus

text: Embryoid body day 3, TAF3 KO

text: EB Day3 Timepoint, TAF3 KO, replicate 1

characteristic: title


text: Eisen, QB3, UC Berkeley

characteristic: INSDC first public

text: live

text: Generic

text: embryoid body day 3

text: TAF3 WT

text: Mus musculus

text: Embryoid body day 3, TAF3 control

text: EB Day3 Timepoint, TAF3 Control, replicate 1


text: Eisen, QB3, UC Berkeley

characteristic: INSDC last update

text: live

text: Generic

text: embryoid body day 3

text: TAF3 KO

text: Mus musculus

text: Embryoid body day 3, TAF3 KO

text: EB Day3 Timepoint, TAF3 KO, replicate 2


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryoid body day 3

text: TAF3 WT

text: Mus musculus

text: Embryoid body day 3, TAF3 control

text: EB Day3 Timepoint, TAF3 Control, replicate 2


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryoid body day 6

text: TAF3 KO

text: Mus musculus

text: Embryoid body day 6, TAF3 KO

text: EB Day6 Timepoint, TAF3 KO, replicate 1


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryoid body day 6

text: TAF3 WT

text: Mus musculus

text: Embryoid body day 6, TAF3 control

text: EB Day6 Timepoint, TAF3 Control, replicate 1


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryoid body day 6

text: TAF3 KO

text: Mus musculus

text: Embryoid body day 6, TAF3 KO

text: EB Day6 Timepoint, TAF3 KO, replicate 2


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryoid body day 6

text: TAF3 WT

text: Mus musculus

text: Embryoid body day 6, TAF3 control

text: EB Day6 Timepoint, TAF3 Control, replicate 2


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryonic stem cells

text: TAF3 KO

text: Mus musculus

text: Embryonic stem cells, TAF3 KO

text: ES

text: ES Timepoint, TAF3 KO, PE, replicate 1


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryonic stem cells

text: TAF3 WT

text: Mus musculus

text: Embryonic stem cells, TAF3 control

text: ES

text: ES Timepoint, TAF3 Control, PE, replicate 1


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryonic stem cells

text: TAF3 KO

text: Mus musculus

text: Embryonic stem cells, TAF3 KO

text: ES

text: ES Timepoint, TAF3 KO, PE, replicate 2


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryonic stem cells

text: TAF3 WT

text: Mus musculus

text: Embryonic stem cells, TAF3 control

text: ES

text: ES Timepoint, TAF3 Control, PE, replicate 2


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) mustard seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 7 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Mustard seed meal-amended microcosm, day 7, replicate 1


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryonic stem cells

characteristic: chip antibody

text: Mus musculus

text: Embryonic stem cells, TAF3 ChIP

text: TAF3 Treatment IP, ES Cells


text: Eisen, QB3, UC Berkeley

characteristic: INSDC secondary accession

text: live

text: Generic

text: embryonic stem cells

text: mock IgG

text: Mus musculus

text: Embryonic stem cells, TAF3 mock

text: TAF3 Mock IP, ES Cells


text: Eisen, QB3, UC Berkeley

text: live

characteristic: INSDC status

text: Generic

text: embryonic stem cells

text: Mus musculus

text: Embryonic stem cells, TAF1 ChIP

text: TAF1 Treatment IP, ES Cells


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

characteristic: NCBI submission model

text: embryonic stem cells

text: mock IgG

text: Mus musculus

text: Embryonic stem cells, TAF1 mock

text: TAF1 Mock IP, ES Cells


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

characteristic: NCBI submission package

characteristic: antibody catalog number

text: Abcam

characteristic: antibody vendor

text: embryonic stem cells

text: anti-TBP

text: Mus musculus

text: Embryonic stem cells, TBP ChIP

text: TBP Treatment IP, ES Cells


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

characteristic: SRA accession

text: embryonic stem cells

characteristic: cell type

text: mock IgG

text: Mus musculus

text: Embryonic stem cells, TBP/PolII mock

text: TBP/PolII Mock IP, ES Cells


text: Eisen, QB3, UC Berkeley

text: live

text: Generic

text: embryonic stem cells

text: anti-PolII

text: Mus musculus

text: Embryonic stem cells, PolII ChIP

characteristic: strain

text: PolII Treatment IP, ES Cells


text: live

text: Generic

characteristic: description

text: Fungi

text: Mustard seed meal-amended microcosm, day 7, replicate 2


characteristic: External Id

text: live

text: Generic

text: Fungi

text: Mustard seed meal-amended microcosm, day 7, replicate 3


text: CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics,Chinese Academy of Sciences

characteristic: INSDC center name

text: live

text: Generic

text: mammary epithelial cell

text: Homo sapiens

text: immortalized hMEC

text: hTERT overexpression induced immortalized hMEC

text: no

characteristic: tumor formation


text: live

text: Generic

text: mammary epithelial cell

text: Homo sapiens

characteristic: organism

text: tumorigenic hMEC

text: heavy ions radiation induced tumorigenic hMEC based on I_hMEC

characteristic: title

text: yes


text: Elaine Fuchs, Mammalian cell biology and development, The Rockefeller Unoversity

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: age

text: female

characteristic: gender

text: Mus musculus

text: integrin alpha 6 and CD34

characteristic: sorting markers

text: Mouse back skins

text: qHF-SC_input DNA


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: H3K4me3 (Abcam, ab1012)

characteristic: chip antibody

text: female

text: Mus musculus

text: integrin alpha 6 and CD34

text: Mouse back skins


text: live

text: Generic

characteristic: SRA accession

text: H3K79me2 (Abcam, ab3594)

text: female

text: Mus musculus

text: integrin alpha 6 and CD34

text: Mouse back skins

characteristic: strain


characteristic: External Id

text: live

text: Generic

text: H3K27me3 (Millipore, 07-449)

text: female

text: Mus musculus

text: integrin alpha 6 and CD34

text: Mouse back skins


characteristic: INSDC center name

text: live

text: Generic

text: female

text: Mus musculus

text: GFP, integrin alpha 6 and CD34

text: Mouse back skins

text: aHF-SC_input DNA


text: live

text: Generic

text: H3K4me3 (Abcam, ab1012)

text: female

text: Mus musculus

text: GFP, integrin alpha 6 and CD34

text: Mouse back skins


text: live

text: Generic

text: H3K79me2 (Abcam, ab3594)

text: female

text: Mus musculus

text: GFP, integrin alpha 6 and CD34

text: Mouse back skins


text: live

text: Generic

text: H3K27me3 (Millipore, 07-449)

text: female

text: Mus musculus

text: GFP, integrin alpha 6 and CD34

text: Mouse back skins


text: live

text: Generic

text: female

text: Mus musculus

text: GFP, integrin alpha 6, ephrinB1

text: Mouse back skins

text: HF-TAC_input DNA


text: live

text: Generic

text: H3K4me3 (Abcam, ab1012)

text: female

text: Mus musculus

text: GFP, integrin alpha 6, ephrinB1

text: Mouse back skins


text: live

text: Generic

text: H3K79me2 (Abcam, ab3594)

text: female

text: Mus musculus

text: GFP, integrin alpha 6, ephrinB1

text: Mouse back skins


text: live

text: Generic

text: H3K27me3 (Millipore, 07-449)

text: female

text: Mus musculus

text: GFP, integrin alpha 6, ephrinB1

text: Mouse back skins


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) mustard seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 14 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

characteristic: description

text: Fungi

text: Mustard seed meal-amended microcosm, day 14, replicate 1


text: Broad Institute

text: live

text: Generic

text: United States

text: DNA:ss Viral cDNA

characteristic: isolation source

text: West Nile virus

characteristic: organism

characteristic: sample name

text: West Nile virus

characteristic: specific host

text: Generic sample from West Nile virus


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Female

characteristic: host sex

text: Blautia sp. ORNL_6EZ5-Gt_6_Pl2-149

text: Generic sample from Blautia sp. ORNL_6EZ5-Gt_6_Pl2-149

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Fungi

text: Mustard seed meal-amended microcosm, day 14, replicate 2


text: Microbiology, Victorian Bioinformatics Consortium

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: colistin 10mg/mL

characteristic: antibiotic

text: mid-log

characteristic: growth stage

text: Acinetobacter baumannii

text: bacterial cells


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: No selection

text: mid-log

text: Acinetobacter baumannii

text: bacterial cells

text: ATCC 19606

characteristic: strain

text: type strain of Acinetobacter baumannii

characteristic: type material


characteristic: INSDC center name

text: live

text: Generic

characteristic: description

text: Fungi

characteristic: organism

text: Mustard seed meal-amended microcosm, day 14, replicate 3


characteristic: INSDC first public

text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) mustard seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 28 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Mustard seed meal-amended microcosm, day 28, replicate 1


characteristic: INSDC last update

text: live

text: Generic

text: Fungi

text: Mustard seed meal-amended microcosm, day 28, replicate 2


text: live

text: Generic

text: Fungi

text: Mustard seed meal-amended microcosm, day 28, replicate 3


text: Broad Institute

text: live

text: Generic

text: human gut metagenome

characteristic: sample name

text: Generic sample from human gut metagenome


text: Dunnlab at Brown University, Department of Ecology and Evolutionary Biology

text: live

text: Generic

text: RNA extracted with Trizol, RNeasy kit clean up with DNase treatment on column, two rounds of mRNA extraction with Dynabeads, NEB mRNA-seq sample prep kit.

text: Ennucula tenuis

text: Illumina Ennucula tenuis transcriptome

characteristic: title


text: Department of Molecular Biology (274), Radboud University

characteristic: INSDC secondary accession

text: live

text: Generic

text: 600mM of NaCl solution

characteristic: elution

text: Mus musculus

text: e14 clones from the sigtr gene-trap library passages: 11-14

characteristic: sample type

text: E14 stem cells


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 800mM of NaCl solution

text: Mus musculus

text: E14 stem cells


characteristic: External Id

text: live

text: Generic

characteristic: antibody

text: Mus musculus

text: E14 stem cells

text: Diagenode

characteristic: vendor


text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: E14 stem cells

text: Active Motif


characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: Embryonic stem cells carrying the EGFP reporter at the Nanog locus (TNG) from Austin Smith

text: E14 stem cells (TNG-A)


text: German Center for Cancer Research

text: live

text: Generic

text: Amoeba cells

characteristic: cell type

text: Entamoeba histolytica

text: Amoeba cells

characteristic: strain


text: Ian D. Hickson lab, Nordea Centre for Healthy Aging, Faculty Of Health Sciences Department of Cellular and Molecular Medicine, University of Copenhagen

characteristic: INSDC first public

text: live

text: Generic

text: Peripheral blood B-lymphocytes

text: translocation t(8;20)(p12;q11.23) carriers

characteristic: genotype/variation

characteristic: mbd

text: Homo sapiens

characteristic: organism

text: whole blood

characteristic: tissue

text: MBD-Seq_Sample_1 using his-MBD2B


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Peripheral blood B-lymphocytes

text: Homo sapiens

text: whole blood

text: MBD-Seq_Sample_2 using his-MBD2B

characteristic: title


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Peripheral blood B-lymphocytes

text: normal control

text: Homo sapiens

text: whole blood

text: MBD-Seq_Control_1 using his-MBD2B


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission package

text: Peripheral blood B-lymphocytes

text: normal control

text: Homo sapiens

text: whole blood

text: MBD-Seq_Control_2 using his-MBD2B


text: live

text: Generic

text: Peripheral blood B-lymphocytes

text: Homo sapiens

text: HpaII (New England Biolabs, R0171L)

characteristic: restriction enzyme

text: whole blood

text: MRE-Seq_Sample_1 using HpaII


text: live

text: Generic

characteristic: SRA accession

text: Peripheral blood B-lymphocytes

text: Homo sapiens

text: HpaII (New England Biolabs, R0171L)

text: whole blood

text: MRE-Seq_Sample_2 using HpaII