text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.1

text: Homo sapiens

text: tier 1


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Refer to publication or NDRI

tag: attribute

text: pancreatic islets from 2 donors, the sources of these primary cells are cadavers from National Disease Research Interchange (NDRI) and another sample isolated as in Bucher, P. et al., Assessment of a novel two-component enzyme preparation for human islet isolation and transplantation. Transplantation 79, 917 (2005)

text: normal

text: endoderm

text: human

text: M

characteristic: cell sex

characteristic: controlid

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

characteristic: datatype description

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,Lieb Lab peaks

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description

text: PanIslets

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

text: NH-A

characteristic: cell

text: astrocytes (also called Astrocy)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

text: FaireSeq

text: FAIRE followed by sequencing

text: UNC

characteristic: lab

text: Lieb - University of North Carolina

characteristic: lab description

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

text: NH-A


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ATCC

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

characteristic: cell sex

characteristic: controlid

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_HelaS3,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Coriell

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

text: mesoderm

text: human

text: M

text: FaireSeq

text: FAIRE-seq Open Chromatin

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Dr. Darrell Bigner at Duke University Medical Center

text: glioblastoma, these cells (aka H54 and D54) come from a surgical resection from a patient with glioblastoma multiforme (WHO Grade IV). D54 is a commonly studied glioblastoma cell line (Bao et al., 2006) that has been thoroughly described by S Bigner (1981). (PMID: 7252524)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

text: Gliobla/Input

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_H54,p-value cutoff: 0.1

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

text: Gliobla


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: medulloblastoma (aka D721), surgical resection from a patient with medulloblastoma as described by Darrell Bigner (1997)

text: cancer

text: ectoderm

text: human

text: U

characteristic: cell sex

characteristic: controlid

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

text: Medullo


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

text: umbilical vein endothelial cells

text: normal

text: mesoderm

text: human

text: U

text: HUVEC/Input

text: FaireSeq

text: FAIRE-seq Open Chromatin

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_HUVEC

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

text: HUVEC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Dr. D Sens at University of N. Dakota

text: primary ureter cell culture of urothelial cells derived from a 12 year-old girl and immortalized by transfection with a temperature-sensitive SV-40 large T antigen gene

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

text: F

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_female,p-value cutoff: 0.1

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

characteristic: replicate description

text: Urothelia

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ATCC

text: liver carcinoma

text: hepatocellular carcinoma

text: cancer

text: endoderm

characteristic: cell lineage

text: M

characteristic: cell sex

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_HepG2,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: Homo sapiens

text: tier 1


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Coriell

characteristic: biomaterial provider

text: lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

text: mesoderm

text: human

characteristic: cell organism

text: M

characteristic: controlid

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,1% ENCODE array platform validation tests,p-value cutoff: 0.1

text: Homo sapiens

text: tier 1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

text: cervical carcinoma

characteristic: cell description

text: cancer

text: ectoderm

text: human

text: F

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_HelaS3,p-value cutoff: 0.05

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: treatment

text: 4 hours of 500 U/ml Interferon alpha (Crawford)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Coriell

text: mesoderm

characteristic: cell lineage

text: human

text: F

characteristic: cell sex

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_female,1% ENCODE array platform validation tests,p-value cutoff: 0.1

text: Homo sapiens

text: tier 1

characteristic: replicate description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Coriell

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

text: mesoderm

text: human

characteristic: cell organism

text: M

characteristic: controlid

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: Homo sapiens

text: tier 1


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

text: F

text: FaireSeq

text: FAIRE-seq Open Chromatin

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: treatment

text: Interferon gamma treatment - 4 hours with 5 ng/ml (Crawford)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

characteristic: cell lineage

text: F

characteristic: cell sex

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_GM12878,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: Homo sapiens

text: tier 1

characteristic: replicate description

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

characteristic: cell organism

text: F

characteristic: controlid

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_K562

text: Homo sapiens

text: tier 1


characteristic: External Id

text: Karlsruhe Institute of Technology

characteristic: INSDC secondary accession

text: live

text: Generic

text: AJ - Japanese eel _ T - Taiwanese population F$ - female worm

characteristic: description

text: Anguillicola crassus

characteristic: organism


text: NIDDK

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: cell line

text: HELA cell culture

characteristic: cell type

text: Anti-FLAG M2

characteristic: chip antibody

text: Homo sapiens

text: HeLa_HA-flag-Vezf1 ChIP-Seq

text: HA-flag-Vezf1 ChIP-Seq Sample 1


text: NIDDK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: HELA cell culture

text: Anti-FLAG M2

text: Homo sapiens

text: HeLa_HA-flag-Vezf1 ChIP-Seq

text: HA-flag-Vezf1 ChIP-Seq Sample 2

characteristic: title


text: NIDDK

text: live

text: Generic

characteristic: SRA accession

text: HELA cell culture

text: Anti-RNA polymerase II CTD repeat YSPTSPS (phospho S2) antibody

text: Abcam

characteristic: chip antibody vendor

text: Homo sapiens

text: HeLa_RNA Polymerase 2 ChIP-Seq

text: RNA Polymerase 2 ChIP-Seq HELA


text: NIDDK

text: live

text: Generic

text: HELA cell culture

text: Homo sapiens

text: HeLa_Input DNA

text: Input HELA Sample 1


text: NIDDK

text: live

text: Generic

text: HELA cell culture

text: Homo sapiens

text: HeLa_Input DNA

text: Input HELA Sample 2


text: NIDDK

text: live

text: Generic

text: embryonic stem (ES) cells

text: Abcam

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: mm9ES_wt_RNA Polymerase 2 ChIP-Seq

text: RNA Polymerase 2 ChIP-Seq mm9ES wt


characteristic: External Id

text: NIDDK

text: live

text: Generic

text: embryonic stem (ES) cells

text: wild type

text: Mus musculus

text: mm9ES_wt_Input DNA

text: Input mm9ES wt


text: NIDDK

characteristic: INSDC secondary accession

text: live

text: Generic

text: embryonic stem (ES) cells

text: Abcam

text: Mus musculus

text: mm9ES_Vezf1_ko_RNA Polymerase 2 ChIP-Seq

text: RNA Polymerase 2 ChIP-Seq mm9ES Vezf1 ko


text: NIDDK

text: live

text: Generic

text: embryonic stem (ES) cells

text: Mus musculus

text: mm9ES_Vezf1 ko_Input

text: Input Vezf1 ko


text: NIAMS

text: live

text: Generic

text: CD43- resting B cells were isolated from mouse spleens by negative selection with magnetic beads (Miltenyi Biotech). Following isolation, resting B cells were stimulated with LPS (50 mcg/ml) and IL-4 (2.5 ng/ml) for 72 hrs.

characteristic: description

text: Mus musculus

text: In vitro activated mouse B cells used for Circularized Chromosome Conformation Capture (4C)


text: Laboratory of Computational Genomics, Adam Mickiewicz University

text: live

text: Generic

text: 35-day-old (fully developed)

characteristic: age

characteristic: ecotype

text: wild type

text: Arabidopsis thaliana

characteristic: organism

text: 35-day-old plant rosette leaves

text: rosette leaves

characteristic: tissue

text: Endogenous small RNAs from A. thaliana col-0_WT_rosette leaves_2


rauli

text: INTA

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Nothofagus nervosa

text: Transcriptome survey of Patagonian southern beech Nothofagus nervosa (= N. alpina): assembly, annotation and molecular marker discovery


text: NIAMS

characteristic: INSDC center name

text: live

text: Generic

text: CD43- resting B cells were isolated from mouse spleens by negative selection with magnetic beads (Miltenyi Biotech).

text: Mus musculus

text: Resting mouse B cells used for Circularized Chromosome Conformation Capture (4C)


text: Forest Products, Mississippi State University

characteristic: INSDC first public

text: live

text: Generic

text: Wood exhibits less than 5% loss in compression strength

characteristic: compression strength

characteristic: developmental stage

text: Fibroporia radiculosa TFFH 294

text: hyphae


characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: Wood exhibits 52% loss in compression strength

text: Fibroporia radiculosa TFFH 294

text: hyphae

characteristic: title


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Generic

text: Clostridium thermocellum 596

text: Acetivibrio thermocellus ATCC 27405

characteristic: sample number

characteristic: strain

text: Generic sample from Clostridium thermocellum ATCC 27405


text: NIAMS

characteristic: INSDC secondary accession

text: live

text: Generic

text: CD43- resting B cells were isolated from AID-/- mouse spleens by negative selection with magnetic beads (Miltenyi Biotech). Following isolation, resting B cells were stimulated with LPS (50 mcg/ml) and IL-4 (2.5 ng/ml) for 72 hrs.

characteristic: description

text: Mus musculus

text: AID-/- in vitro activated mouse B cells used for Circularized Chromosome Conformation Capture (4C)


text: NIAMS

text: live

text: Generic

text: Primary MEFS: E13/P1

text: Mus musculus

characteristic: organism

text: Mouse embryonic fibroblasts used for Circularized Chromosome Conformation Capture (4C)


text: NIAMS

text: live

text: Generic

text: CD43- resting B cells were isolated from antiHEL/antiHEL mouse spleens by negative selection with magnetic beads (Miltenyi Biotech). Following isolation, resting B cells were stimulated with LPS (50 mcg/ml) and IL-4 (2.5 ng/ml) for 72 hrs.

text: Mus musculus

text: In vitro activated mouse antiHEL/antiHel B cells used for Circularized Chromosome Conformation Capture (4C)


text: Bernstein Lab, Oncological Sciences, Mount Sinai School of Medicine

text: live

text: Generic

characteristic: cell line

text: mH2A1 (ab37264, ABCAM)

characteristic: chip antibody

text: Homo sapiens

text: ATRX (sh92)

characteristic: shRNA construct

text: ATRX knockdown


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: mH2A1 (ab37264, ABCAM)

text: Homo sapiens

text: luciferase (shluc)

text: control knockdown


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: none (input)

text: Homo sapiens

text: luciferase (shluc)

text: Input control

text: shluc.Input


text: Cancer Genomics, Vertebrate Genomics, Max-Planck-Institut for Molecular Genetics

characteristic: INSDC last update

text: live

text: Generic

characteristic: gleason

text: Homo sapiens

text: prostate tumor biopsy

characteristic: tumor stage


characteristic: External Id

text: University of Washington Genome Sciences - Shendure Lab

text: live

text: Generic

characteristic: SRA accession

text: Synthetic templates representing mutagenized versions of an enhancer located in the intron of human ALDOB gene were cloned into a plasmid (Promega pGL4.23) upstream of the luciferase gene. The 3' UTR of the luciferase gene was engineered to include a 20bp fully degenerate subsequence to serve as a unique tag to identify each mutant haplotype.

text: synthetic construct

text: A library of tagged ALDOB haplotypes

characteristic: title


text: Nerbonne, Developmental Biology, Washington University in St Louis

characteristic: INSDC secondary accession

text: live

text: Generic

text: WT

characteristic: genotype

text: Mus musculus

text: WT Sham 6 LV RNA

text: FVB

characteristic: strain

text: heart left ventricle

characteristic: tissue

text: WT Sham 6 LV miRNA Seq

text: Sham

characteristic: treatment


text: live

text: Generic

text: WT

text: Mus musculus

characteristic: organism

text: WT Sham 7 LV RNA

text: FVB

text: heart left ventricle

text: WT Sham 7 LV miRNA Seq

text: Sham


text: live

characteristic: INSDC status

text: Generic

text: WT

text: Mus musculus

text: WT Sham 13 LV RNA

text: FVB

text: heart left ventricle

text: WT Sham 13 LV miRNA Seq

text: Sham


text: live

text: Generic

characteristic: NCBI submission model

text: WT

text: Mus musculus

text: WT Sham 15 LV RNA

text: FVB

text: heart left ventricle

text: WT Sham 15 LV miRNA Seq

text: Sham


text: live

text: Generic

characteristic: NCBI submission package

text: WT

text: Mus musculus

text: WT TAC 1 LV RNA

text: FVB

text: heart left ventricle

text: WT TAC 1 LV miRNA Seq

text: TAC


characteristic: INSDC center name

text: live

text: Generic

text: WT

text: Mus musculus

text: WT TAC 2 LV RNA

text: FVB

text: heart left ventricle

text: WT TAC 2 LV miRNA Seq

text: TAC


characteristic: INSDC first public

text: live

text: Generic

text: WT

text: Mus musculus

text: WT TAC 17 LV RNA

text: FVB

text: heart left ventricle

text: WT TAC 17 LV miRNA Seq

text: TAC


characteristic: INSDC last update

text: live

text: Generic

text: WT

text: Mus musculus

text: WT TAC 19 LV RNA

text: FVB

text: heart left ventricle

text: WT TAC 19 LV miRNA Seq

text: TAC


text: live

text: Generic

text: WT

text: Mus musculus

text: WT TAC 20 LV RNA

text: FVB

text: heart left ventricle

text: WT TAC 20 LV miRNA Seq

text: TAC


text: live

text: Generic

text: PI3Kalpha mutant

text: Mus musculus

text: PI3Kalpha Sham 5 LV RNA

text: FVB

text: heart left ventricle

text: PI3Kalpha Sham 5 LV miRNA Seq

text: Sham


text: live

text: Generic

text: PI3Kalpha mutant

text: Mus musculus

text: PI3Kalpha Sham 8 LV RNA

text: FVB

text: heart left ventricle

text: PI3Kalpha Sham 8 LV miRNA Seq

text: Sham


text: live

text: Generic

text: PI3Kalpha mutant

text: Mus musculus

text: PI3Kalpha Sham 14 LV RNA

text: FVB

text: heart left ventricle

text: PI3Kalpha Sham 14 LV miRNA Seq

text: Sham


text: live

text: Generic

text: PI3Kalpha mutant

text: Mus musculus

text: PI3Kalpha TAC 8 LV RNA

text: FVB

text: heart left ventricle

text: PI3Kalpha TAC 8 LV miRNA Seq

text: TAC


text: live

text: Generic

text: PI3Kalpha mutant

text: Mus musculus

text: PI3Kalpha TAC 9 LV RNA

text: FVB

text: heart left ventricle

text: PI3Kalpha TAC 9 LV miRNA Seq

text: TAC


text: live

text: Generic

text: PI3Kalpha mutant

text: Mus musculus

text: PI3Kalpha TAC 11 LV RNA

text: FVB

text: heart left ventricle

text: PI3Kalpha TAC 11 LV miRNA Seq

text: TAC


text: live

text: Generic

text: PI3Kalpha mutant

text: Mus musculus

text: PI3Kalpha TAC 211 LV RNA

text: FVB

text: heart left ventricle

text: PI3Kalpha TAC 211 LV miRNA Seq

text: TAC


text: live

text: Generic

text: WT

text: Mus musculus

text: WT Sham 6 LV RNA

text: FVB

text: heart left ventricle

text: WT Sham 6 LV mRNA Seq

text: Sham


text: live

text: Generic

text: WT

text: Mus musculus

text: WT Sham 13 LV RNA

text: FVB

text: heart left ventricle

text: WT Sham 13 LV mRNA Seq

text: Sham


text: live

text: Generic

text: WT

text: Mus musculus

text: WT Sham 13 LV RNA

text: FVB

text: heart left ventricle

text: WT Sham 15 LV mRNA Seq

text: Sham


text: live

text: Generic

text: WT

text: Mus musculus

text: WT Sham 7 LV RNA

text: FVB

text: heart left ventricle

text: WT Sham 7 LV mRNA Seq

text: Sham


text: live

text: Generic

text: WT

text: Mus musculus

text: WT TAC 1 LV RNA

text: FVB

text: heart left ventricle

text: WT TAC 1 LV mRNA Seq

text: TAC


text: live

text: Generic

text: WT

text: Mus musculus

text: WT TAC 17 LV RNA

text: FVB

text: heart left ventricle

text: WT TAC 17 LV mRNA Seq

text: TAC


text: live

text: Generic

text: WT

text: Mus musculus

text: WT TAC 19 LV RNA

text: FVB

text: heart left ventricle

text: WT TAC 19 LV mRNA Seq

text: TAC


text: live

text: Generic

text: PI3Kalpha mutant

text: Mus musculus

text: PI3Kalpha Sham 5 LV RNA

text: FVB

text: heart left ventricle

text: PI3Kalpha Sham 5 LV mRNA Seq

text: Sham


text: live

text: Generic

text: PI3Kalpha mutant

text: Mus musculus

text: PI3Kalpha Sham 8 LV RNA

text: FVB

text: heart left ventricle

text: PI3Kalpha Sham 8 LV mRNA Seq

text: Sham


text: live

text: Generic

text: PI3Kalpha mutant

text: Mus musculus

text: PI3Kalpha TAC 11 LV RNA

text: FVB

text: heart left ventricle

text: PI3Kalpha TAC 11 LV mRNA Seq

text: TAC


text: live

text: Generic

text: PI3Kalpha mutant

text: Mus musculus

text: PI3Kalpha TAC 211 LV RNA

text: FVB

text: heart left ventricle

text: PI3Kalpha TAC 211 LV mRNA Seq

text: TAC


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Conidiobolus coronatus NRRL28638

characteristic: description

text: Conidiobolus coronatus NRRL 28638

characteristic: sample number

text: NRRL 28638

text: Generic sample from Conidiobolus coronatus NRRL 28638


"Romanesco C3" genotype

characteristic: External Id

text: University of Turin - DIVAPRA

text: live

text: Generic

characteristic: SRA accession

text: Globe artichoke genotype. Total RNA was extracted with Trizol reagent from leaf and root tissue. cDNA was synthesized using the SMART PCR cDNA Synthesis Kit and then normalized with the TRIMMER-DIRECT Kit.

text: Cynara cardunculus var. scolymus

text: Romanesco C3 genotype - transcriptome sequencing


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Brachypodium distachyon Bd3-1

text: Brachypodium distachyon

text: Generic sample from Brachypodium distachyon

characteristic: title


"Altilis 41" genotype

text: University of Turin - DIVAPRA

text: live

text: Generic

text: Cultivated cardoon genotype. Total RNA was extracted with Trizol reagent from leaf and root tissue. cDNA was synthesized using the SMART PCR cDNA Synthesis Kit and then normalized with the TRIMMER-DIRECT Kit.

text: Cynara cardunculus var. altilis

text: Altilis 41 genotype - transcriptome sequencing


L. stagnalis diquat-exposure library

text: INRA

text: live

text: Generic

text: The sample was built from multiple tissue RNA extraction from individuals of three different geographical origins ((Rennes F: INRA Renilys culture, Amsterdam NL: VU Amsterdam laboratory culture, S*nderborg DK: Sandjberg, Aarhus Univ.) submitted for 5 hours to the herbicide diquat.

text: Lymnaea stagnalis

text: L. stagnalis multiple tissue sample from a pool of individuals exposed to diquat


text: DOE Joint Genome Institute

text: live

text: Generic

text: Escherichia coli K-12

characteristic: strain

text: Generic sample from Escherichia coli str. K-12 substr. MG1655


text: Max Planck Institute for Marine Microbiology

text: live

text: Generic

text: hypersaline lake metagenome

text: interface of deep hypersaline lake Thetis


text: live

text: Generic

text: hypersaline lake metagenome

text: brine of deep hypersaline lake Thetis


text: DOE Joint Genome Institute

text: live

text: Generic

text: Clostridium thermocellum 527

text: Acetivibrio thermocellus ATCC 27405

text: Generic sample from Clostridium thermocellum ATCC 27405


mouse stem cell ncRNAs

text: Adam Mickiewicz University in Poznan

text: live

text: Generic

text: The sample contain the small RNAs isolated from mouse neural embryonic stem cells

text: Mus musculus

text: Non-coding RNAs in neural embryonic stem cell differentiation - neural stem cells


text: live

text: Generic

text: Odoribacter splanchnicus DSM 20712

text: Odoribacter splanchnicus DSM 20712

text: DSM 20712

text: Generic sample from Odoribacter splanchnicus DSM 20712


text: NCBI Test Center

text: live

text: Generic

text: Testing MODIFY444444

text: Homo sapiens

text: Test


text: DOE Joint Genome Institute

text: live

text: Generic

text: Leptonema illini DSM 21528

text: Leptonema illini DSM 21528

text: DSM 21528

text: Generic sample from Leptonema illini DSM 21528


text: DOE Joint Genome Institute

text: live

text: Generic

text: Escherichia coli MG1655

text: Escherichia coli str. K-12 substr. MG1655


text: DOE Joint Genome Institute

text: live

text: Generic

text: Aspergillus tubingensis CBS 134.48

text: Aspergillus tubingensis CBS 134.48

text: CBS 134.48

text: Generic sample from Aspergillus tubingensis CBS 134.48


text: Institut Curie

text: live

text: Generic

text: barcode

characteristic: barcode/index

characteristic: cell line

text: embryonic stem cells

characteristic: cell type

text: 454 adapter

characteristic: comment

text: Mus musculus

text: ES E14 male cells

characteristic: technology


text: Institut Curie

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: embryonic stem cells

text: Illumina 3' adapter

text: Mus musculus

characteristic: organism

text: ES E14 male cells

text: Solexa


text: Institut Curie

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: index

text: embryonic stem cells

text: IDT 3' adapter

text: Mus musculus

text: ES E14 male cells

text: Solexa


characteristic: External Id

text: Institut Curie

text: live

text: Generic

text: embryonic stem cells

text: IDT 3' adapter

text: Mus musculus

text: ES E14 male cells

text: Solexa


text: Institut Curie

text: live

text: Generic

characteristic: SRA accession

text: embryonic stem cells

text: SREK kit v.B

text: Mus musculus

text: ES E14 male cells

text: SOLiD


text: Institut Curie

characteristic: INSDC secondary accession

text: live

text: Generic

text: barcode

text: embryonic stem cells

text: STaR-Seq kit

text: Mus musculus

text: ES E14 male cells

text: SOLiD


text: Institut Curie

text: live

text: Generic

text: barcode

text: PGK

text: embryonic stem cells

text: 454 adapter

text: Mus musculus

text: ES PGK female cells

characteristic: title


text: Institut Curie

text: live

text: Generic

text: index

text: PGK

text: embryonic stem cells

text: Illumina 3' adapter

text: Mus musculus

text: ES PGK female cells

text: Solexa


text: Institut Curie

text: live

text: Generic

text: PGK

text: embryonic stem cells

text: SREK kit v.B

text: Mus musculus

text: ES PGK female cells

text: SOLiD


text: Institut Curie

text: live

text: Generic

text: barcode

text: PGK

text: embryonic stem cells

text: STaR-Seq kit

text: Mus musculus

text: ES PGK female cells

text: SOLiD


text: Massachusetts General Hospital

text: live

text: Generic

characteristic: antibody lot

text: Santa Cruz

characteristic: antibody vendor

text: ES-derived cardiac progenitor cells (CPCs)

characteristic: chip antibody

text: day 6 of EB differentiation

characteristic: differentiation time

text: Mus musculus

text: Cardiac progenitor cells, YYI ChIP

characteristic: strain

text: FACS-sorted eGFP+ CPCs, rep1


text: Massachusetts General Hospital

text: live

text: Generic

text: Santa Cruz

characteristic: cell type

text: day 6 of EB differentiation

text: Mus musculus

text: Cardiac progenitor cells, YYI ChIP

text: FACS-sorted eGFP+ CPCs, rep2


text: Massachusetts General Hospital

text: live

characteristic: INSDC status

text: Generic

text: day 6 of EB differentiation

text: Mus musculus

text: Cardiac progenitor cells, input

text: FACS-sorted eGFP+ CPCs input


Tectaria macrodonta

text: National Botanical research Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Plant was collected from fern house of National Botanical research Institute, lucknow, india. Plant is also located at pachmarhi biosphere reserve, India.

characteristic: description

text: Tectaria

text: Tectaria macrodonta leaves transcriptome data


608166.11054.Genomic DNA.Ecoli_DEV_G

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

characteristic: biosamplemodel

text: Escherichia coli

characteristic: organism

characteristic: sample id

text: Genomic DNA

characteristic: sample type

text: Other

characteristic: sex

text: E. coli MG1655 Genomic DNA sample Ecoli_DEV_G


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum PS206_E11

characteristic: sample name

text: Generic sample from Plasmodium falciparum


PRJNA67667.Plasmodium falciparum PS189

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum PS189

characteristic: strain

characteristic: title


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum PS122_G11


PRJNA67667.Plasmodium falciparum PS149

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum PS149


PRJNA67667.Plasmodium falciparum PS103

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Plasmodium falciparum

text: Plasmodium falciparum PS103


PRJNA67667.Plasmodium falciparum PS097

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum PS097


PRJNA67667.Plasmodium falciparum PS183

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum PS183


PRJNA67667.Plasmodium falciparum PS170

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum PS170


PRJNA67667.Plasmodium falciparum PS186

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum PS186


PRJNA67667.Plasmodium falciparum PS250

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum PS250


papline

text: National Botanical Research Institute

text: live

text: Generic

text: Papaver somniferum

text: Comparative Transcriptome Analysis of Wild Type and pap1 Mutant of Papaver somnifera Using 454-Sequencing Platform


text: DOE Joint Genome Institute

text: live

text: Generic

text: Aequorivita sublithincola DSM 14238

characteristic: description

text: Aequorivita sublithincola DSM 14238

characteristic: sample number

text: DSM 14238

text: Generic sample from Aequorivita sublithincola DSM 14238


text: DOE Joint Genome Institute

text: live

text: Generic

text: Desulfobacca acetoxidans DSM 11109

text: Desulfobacca acetoxidans DSM 11109

text: DSM 11109

text: Generic sample from Desulfobacca acetoxidans DSM 11109


text: DOE Joint Genome Institute

text: live

text: Generic

text: Myroides odoratus DSM 2801

text: Myroides odoratus DSM 2801

text: DSM 2801

text: Generic sample from Myroides odoratus DSM 2801


text: DOE Joint Genome Institute

text: live

text: Generic

text: Parageobacillus thermoglucosidasius C56-YS93

text: Generic sample from Geobacillus thermoglucosidasius C56-YS93


text: DOE Joint Genome Institute

text: live

text: Generic

text: Enterobacter asburiae LF7a

text: Enterobacter asburiae LF7a

text: Generic sample from Enterobacter asburiae LF7a


text: University of Washington

text: live

text: Generic

characteristic: cell line

text: human embryonic stem cells

characteristic: cell type

characteristic: chip

text: Homo sapiens

text: hESCs-H1 line


characteristic: External Id

text: University of Washington

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: human erythroblasts

text: Homo sapiens

text: hESC-H1 line-derived erythroblasts


text: University of Washington

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: human erythroblasts

text: Homo sapiens

text: human fetal liver derived erythroblasts


text: University of Washington

text: live

text: Generic

text: human erythroblasts

text: Homo sapiens

text: human mobilized peripheral blood derived erythroblasts

characteristic: title


text: Microarray Core, DIR, NIEHS

text: live

characteristic: INSDC status

text: Generic

text: WT

characteristic: genotype

text: Schizosaccharomyces pombe

text: WT47 Rep1


text: Microarray Core, DIR, NIEHS

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: WT

text: Schizosaccharomyces pombe

text: WT47 Rep2


text: Microarray Core, DIR, NIEHS

text: live

text: Generic

text: WT

text: Schizosaccharomyces pombe

characteristic: organism

text: WT48 Rep1


text: Microarray Core, DIR, NIEHS

text: live

text: Generic

text: WT

text: Schizosaccharomyces pombe

text: WT48 Rep2


text: Microarray Core, DIR, NIEHS

text: live

text: Generic

text: zfs1 null mutant

text: Schizosaccharomyces pombe

text: zfs1delta49 Rep1


text: Microarray Core, DIR, NIEHS

text: live

text: Generic

text: zfs1 null mutant

text: Schizosaccharomyces pombe

text: zfs1delta50 Rep2


GammaS

text: Istituto Italiano di Tecnologia

text: live

text: Generic

text: Homo sapiens

text: ChIP of gH2AX for IrrSen cells


InputS

text: Istituto Italiano di Tecnologia

text: live

text: Generic

text: Homo sapiens

text: Input for IrrSen cells


GammaQ

text: Istituto Italiano di Tecnologia

text: live

text: Generic

text: Homo sapiens

text: ChIP of gH2AX for Quiescent cells


InputQ

text: Istituto Italiano di Tecnologia

text: live

text: Generic

text: Homo sapiens

text: Input for Quiescent cells


text: Gregory Lab, Department of Biology, University of Pennsylvania

text: live

text: Generic

characteristic: background ecotype

text: AGO4 antibody

characteristic: chip antibody

text: Wild type

characteristic: genotype/variation

text: Arabidopsis thaliana

text: 2-3 week old seedling

characteristic: tissue

text: Col-0 ChIP


text: live

text: Generic

text: Wild type

text: Arabidopsis thaliana

text: WT_input DNA

text: 2-3 week old seedling

text: Col-0 input


text: live

text: Generic

text: AGO4 antibody

text: ago4 mutant

text: Arabidopsis thaliana

text: 2-3 week old seedling

text: ago4 ChIP


text: live

text: Generic

text: ago4 mutant

text: Arabidopsis thaliana

text: ago4_input DNA

text: 2-3 week old seedling

text: ago4 input


text: live

text: Generic

text: AGO4 antibody

text: nrpe1 mutant

text: Arabidopsis thaliana

text: 2-3 week old seedling

text: nrpe1 ChIP


text: live

text: Generic

text: nrpe1 mutant

text: Arabidopsis thaliana

text: nrpe1_input DNA

text: 2-3 week old seedling

text: nrpe1 input


text: Dr. Art Skoultchi, Cell Biology, Albert Einstein College of Medicine

text: live

text: Generic

text: ES-EP

characteristic: cell line

text: ES-cell derived erythroid progenitors

characteristic: cell type

text: polyclonal rabbit a-GATA-1 produced in-house (H Im et al. PNAS 2005)

text: Proliferating

characteristic: growth condition

text: Mus musculus

text: ES-cell derived erythroid progenitors

text: GATA1 ESEP Proliferating Rep1


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: ES-EP

text: ES-cell derived erythroid progenitors

text: Proliferating

text: Mus musculus

text: ES-cell derived erythroid progenitors

text: GATA1 ESEP Proliferating Rep2


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: ES-EP

text: ES-cell derived erythroid progenitors

text: Differentiating

text: Mus musculus

text: ES-cell derived erythroid progenitors

text: GATA1 ESEP Differentiating Rep2


text: live

characteristic: INSDC status

text: Generic

text: ES-EP

text: ES-cell derived erythroid progenitors

text: Differentiating

text: Mus musculus

text: ES-cell derived erythroid progenitors

text: GATA1 ESEP Differentiating Rep1A

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ES-EP

text: ES-cell derived erythroid progenitors

text: Differentiating

text: Mus musculus

text: ES-cell derived erythroid progenitors

text: GATA1 ESEP Differentiating Rep1B


text: live

text: Generic

text: ES-EP

text: ES-cell derived erythroid progenitors

text: none, input DNA

text: Differentiating

text: Mus musculus

characteristic: organism

text: ES-cell derived erythroid progenitors

text: ESEP Differentiating Input


Salmonella Saintpaul SARA28

text: clinical/research| human

characteristic: IFSAC+ Category

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Generic

characteristic: biosamplemodel

text: homo sapiens

characteristic: host type

characteristic: ontological term

text: Salmonella enterica subsp. enterica serovar Saintpaul str. SARA28

text: Saintpaul

characteristic: serovar

text: Human

characteristic: source type

characteristic: strain

text: enterica

characteristic: sub species

text: Salmonella Saintpaul SARA28


characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Locust Midgut 1 control metatranscriptome

characteristic: description

text: Schistocerca gregaria

characteristic: sample number

text: Generic sample from Schistocerca gregaria


Salmonella Heidelberg SARA33

text: clinical/research, human

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: culture collection

text: Mexico

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: Salmonella enterica subsp. enterica serovar Heidelberg str. SARA33

text: Salmonella Reference Collection, SGSC:2213

text: Heidelberg

text: Human

text: SGSC 2213

text: enterica

text: Salmonella Heidelberg SARA33

characteristic: title


text: Department of Biochemistry, Boston University School of Medicine

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: antibody

characteristic: cell type

text: Homo sapiens

characteristic: organism

text: 293T cells

text: GPS2 ChIP-seq


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: 293T cells

text: TBL1 ChIP-seq


characteristic: INSDC last update

text: live

text: Generic

text: anti-N-CoR

text: Homo sapiens

text: 293T cells

text: NCOR ChIP-seq (siCTL)


characteristic: INSDC secondary accession

text: live

text: Generic

text: anti-N-CoR

text: Homo sapiens

text: 293T cells

text: NCOR ChIP-seq (siGPS2)


text: Fisheries College, Ocean University of China

text: live

characteristic: INSDC status

text: Generic

text: Application of Suppression Subtractive hybridization to construct a subtractive cDNA library from intestine of Apostichopus japonicus during entry into aestivation.

characteristic: description

text: one year old

characteristic: dev-stage

text: Apostichopus japonicus

text: male and female

characteristic: sex

text: intestine

characteristic: tissue-type

text: Subtractive cDNA library from Apostichopus japonicus during entry into aestivation

text: Plasmid

text: PMD 18-T

characteristic: vector


text: University of Sassari

text: live

text: Generic

text: Pichia fermentans

text: DISAABA 726

characteristic: strain

text: Genes differentially expressed by Pichia fermentans grown on peach vs apple fruit

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

characteristic: analyte type

text: Geneva

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: DS-OH-GSO

text: Homo sapiens

text: male

text: Family/Twin/Trios

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: Geneva

characteristic: submitter handle

text: DNA sample from a human male participant in the dbGaP study Dental Caries: Whole Genome Association and Gene x Environment Studies


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: Geneva

text: DS-OH-GSO

text: Homo sapiens

characteristic: organism

text: male

text: Family/Twin/Trios

text: Dental Caries: Whole Genome Association and Gene x Environment Studies

text: Geneva


text: dbGaP

text: live

text: Generic

text: DNA

text: Geneva

text: DS-OH-GSO

text: Homo sapiens

text: female

characteristic: sex

text: Family/Twin/Trios

text: Geneva

text: DNA sample from a human female participant in the dbGaP study Dental Caries: Whole Genome Association and Gene x Environment Studies

characteristic: title


text: Azabu University School of Veterinary Medicine

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Chaetomium globosum

text: Chaetomium globosum RAPD bands: Yuki 817 and Yuki 1298


text: live

text: Generic

text: Microsporum canis

text: Arthroderma otae RAPD bands: Kasumi 665 and Kasumi 769


text: RMIT University

text: live

text: Generic

text: asterid environmental sample

text: Asterid-specific subraction library


text: New York University

text: live

text: Generic

text: Planktotrophic population collected in Bayonne, NJ, USA. Genomic DNA was double digested and fragments in the 3-10 kb size range were recovered by gel extraction. The fragments were cloned into pUC19 and single-insert clones identified by digestion.

characteristic: description

text: Adults

characteristic: dev-stage

text: Whole animals

characteristic: organ

text: Streblospio benedicti

text: EcoRI

text: HindIII

text: Mixed pool

text: Streblospio benedicti pUC19 genomic library

text: Plasmid

characteristic: vector


text: University of Pennsylvania School of Medicine

text: live

text: Generic

text: liver

characteristic: cell type

text: HeLa

characteristic: cell-line

text: Homo sapiens

text: Transposon Integration Site Library


PrEC

text: Cleveland Clinic Foundation

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: Normal prostate epithelial cells (PrEC)


LNCaP

characteristic: External Id

text: Cleveland Clinic Foundation

characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: human prostate cancer cell line (LNCaP)


DU 145

text: Cleveland Clinic Foundation

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: human prostate cancer cell line (DU 145)


text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: Generic

text: Trichoderma reesei RUT C-30

text: Trichoderma reesei

characteristic: organism

characteristic: sample number

text: RUT C-30

characteristic: strain

text: Generic sample from Trichoderma reesei


D.sim adult whole body

text: NIH/NIDDK

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Drosophila simulans

text: Drosophila simulans adults

characteristic: title


text: DOE Joint Genome Institute

text: live

text: Generic

text: Clostridium thermocellum DSM 1313

characteristic: description

text: Acetivibrio thermocellus DSM 1313

text: DSM 1313

text: Generic sample from Clostridium thermocellum DSM 1313


text: DOE Joint Genome Institute

text: live

text: Generic

text: Escherichia coli MG1655

text: Generic sample from Escherichia coli str. K-12 substr. MG1655


text: DOE Joint Genome Institute

text: live

text: Generic

text: Escherichia coli MG1655

text: Escherichia coli str. K-12 substr. MG1655


text: Stanford University

text: live

text: Generic

text: Oligo-dT selected total RNA from C. elegans adr-1;adr-2 embryos (staged via bleaching)

text: Caenorhabditis elegans

text: C elegans Poly(A) mRNA adr-1;adr-2


text: Stanford University

text: live

text: Generic

text: Oligo-dT selected total RNA from C. elegans adr-1;adr-2 L4 larvae (staged via bleaching followed by starvation at 20C for 24 hours, and growth at 20C for 40 hours)

text: Caenorhabditis elegans

text: C elegans Poly(A) mRNA adr-1;adr-2


text: Stanford University

text: live

text: Generic

text: Oligo-dT selected total RNA from C. elegans wild-type (N2) embryos (staged via bleaching)

text: Caenorhabditis elegans

text: C elegans Poly(A) mRNA N2


text: Stanford University

text: live

text: Generic

text: Oligo-dT selected total RNA from C. elegans wild-type (N2) L4 larvae (staged via bleaching followed by starvation at 20C for 24 hours, and growth at 20C for 40 hours)

text: Caenorhabditis elegans

text: C elegans Poly(A) mRNA from wild-type


text: DOE Joint Genome Institute

text: live

text: Generic

text: Clostridium thermocellum ATCC 27405

text: Acetivibrio thermocellus ATCC 27405

text: ATCC 27405

text: Generic sample from Clostridium thermocellum ATCC 27405

text: type strain of Clostridium thermocellum

characteristic: type material


text: DOE Joint Genome Institute

text: live

text: Generic

text: Deinococcus peraridilitoris DSM 19664

text: Deinococcus peraridilitoris DSM 19664

text: DSM 19664

text: Generic sample from Deinococcus peraridilitoris DSM 19664


text: DOE Joint Genome Institute

text: live

text: Generic

text: Halalkalicoccus jeotgali B3

text: Halalkalicoccus jeotgali B3

text: Generic sample from Halalkalicoccus jeotgali B3


text: DOE Joint Genome Institute

text: live

text: Generic

text: Gillisia limnaea DSM 15749

text: Gillisia limnaea DSM 15749

text: DSM 15749

text: Generic sample from Gillisia limnaea DSM 15749


text: DOE Joint Genome Institute

text: live

text: Generic

text: Deinococcus maricopensis DSM 21211

text: Deinococcus maricopensis DSM 21211

text: DSM 21211

text: Generic sample from Deinococcus maricopensis DSM 21211


text: DOE Joint Genome Institute

text: live

text: Generic

text: Generic sample from Caldicellulosiruptor kronotskyensis 2002


text: DOE Joint Genome Institute

text: live

text: Generic

text: Spirochaeta sp. Grapes

text: Sphaerochaeta pleomorpha str. Grapes

text: Grapes

text: Generic sample from Sphaerochaeta pleomorpha str. Grapes


text: DOE Joint Genome Institute

text: live

text: Generic

text: Chlamydomonas reinhardtii CC-1021

text: Chlamydomonas reinhardtii

text: Generic sample from Chlamydomonas reinhardtii


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: human gut metagenome

characteristic: sample name

text: Generic sample from unclassified Bacteria (miscellaneous)


HTGTS-ProB

text: Howard Hughes Medical Institute at Children's Hospital Boston

characteristic: INSDC secondary accession

text: live

text: Generic

text: HTGTS ATM-/- Data. Cells were treated with 3uM STI571 (Novartis) and 100nM TA (Sigma) for 4 days. In some experiments, 5Gy IR was applied at day 2. ATM inhibitor (Ku55933, Tocris) was used at 15uM. HTGTS was performed as described (Chiarle et al., 2011).

text: Mus musculus musculus

text: HTGTS-ProB


saliva microbiome genes

text: QIBEBT, CAS

text: live

text: Generic

characteristic: SRA accession

text: Bacteria

text: saliva microbiomic genes-H105


Saliva microbiome gene

characteristic: External Id

text: QIBEBT, CAS

text: live

text: Generic

text: Bacteria

text: Saliva microbiomic gene-H114


Saliva microbiomes gene

text: QIBEBT, CAS

characteristic: INSDC center name

text: live

text: Generic

text: Bacteria

text: Saliva microbiomic gene-C201


Saliva microbiomic gene

text: QIBEBT, CAS

characteristic: INSDC first public

text: live

text: Generic

text: Bacteria

text: Saliva microbiomic gene-C218


HTGTS-ProB-WT

characteristic: INSDC last update

text: live

text: Generic

text: HTGTS WT Data. Cells were treated with 3uM STI571 (Novartis) and 100nM TA (Sigma) for 4 days. In some experiments, 5Gy IR was applied at day 2. ATM inhibitor (Ku55933, Tocris) was used at 15uM. HTGTS was performed as described (Chiarle et al., 2011).

text: Mus musculus musculus

text: HTGTS-ProB-WT


"Creta 4" genotype

text: University of Turin - DIVAPRA

text: live

characteristic: INSDC status

text: Generic

text: Wild cardoon genotype. Total RNA was extracted with Trizol reagent from leaf and root tissue. cDNA was synthesized using the SMART PCR cDNA Synthesis Kit and then normalized with the TRIMMER-DIRECT Kit.

text: Cynara cardunculus var. sylvestris

text: Creta 4 genotype - transcriptome sequencing


"Romanesco Zorzi" genotype

text: University of Turin - DIVAPRA

text: live

text: Generic

text: Globe artichoke genotype, commercial seeds. Total RNA was extracted with Trizol reagent from leaf and root tissue. cDNA was synthesized using the SMART PCR cDNA Synthesis Kit and then normalized with the TRIMMER-DIRECT Kit.

text: Cynara cardunculus var. scolymus

characteristic: organism

text: Romanesco Zorzi genotype - transcriptome sequencing


"Violetto di Chioggia" genotype

text: University of Turin - DIVAPRA

text: live

text: Generic

text: Globe artichoke genotype. Total RNA was extracted with Trizol reagent from leaf and root tissue. cDNA was synthesized using the SMART PCR cDNA Synthesis Kit and then normalized with the TRIMMER-DIRECT Kit.

text: Cynara cardunculus var. scolymus

text: Violetto di Chioggia genotype - transcriptome sequencing


"Violetto Pugliese" genotype

text: University of Turin - DIVAPRA

text: live

text: Generic

text: Cynara cardunculus var. scolymus

text: Violetto Pugliese genotype - transcriptome sequencing


"Spinoso Sardo" genotype

text: University of Turin - DIVAPRA

text: live

text: Generic

text: Cynara cardunculus var. scolymus

text: Spinoso Sardo genotype - transcriptome sequencing


"Imperial Star" genotype

text: University of Turin - DIVAPRA

text: live

text: Generic

text: Cynara cardunculus var. scolymus

text: Imperial Star genotype - transcriptome sequencing


"Blanco de Peralta" genotype

text: University of Turin - DIVAPRA

text: live

text: Generic

text: Cultivated cardoon genotype. Total RNA was extracted with Trizol reagent from leaf and root tissue. cDNA was synthesized using the SMART PCR cDNA Synthesis Kit and then normalized with the TRIMMER-DIRECT Kit.

text: Cynara cardunculus var. altilis

text: Blanco de Peralta genotype - transcriptome sequencing


"Gobbo di Nizza" genotype

text: University of Turin - DIVAPRA

text: live

text: Generic

text: Cynara cardunculus var. altilis

text: Gobbo di Nizza genotype - transcriptome sequencing


"Sylvestris_LOT23" genotype

text: University of Turin - DIVAPRA

text: live

text: Generic

text: Cynara cardunculus var. sylvestris

text: Sylvestris_LOT23 genotype - transcriptome sequencing


Platygyra carnosus

text: Department of biology Hong Kong Baptist University

text: live

text: Generic

text: Platygyra carnosa

text: Platygyra carnosus adult transcriptome


text: live

text: Generic

text: Oreochromis niloticus


RUAF

text: Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i.

text: live

text: Generic

text: Rumex acetosa female, collection of plants from Spain. DNA purification via silicagel columns.

text: Rumex acetosa

text: Rumex acetosa female


RUAM

text: live

text: Generic

text: Rumex acetosa male, collection of plants from Spain. DNA purification via silicagel columns.

text: Rumex acetosa

text: Rumex acetosa male


text: Ian D. Hickson lab, Nordea Centre for Healthy Aging, Faculty Of Health Sciences Department of Cellular and Molecular Medicine, University of Copenhagen

text: live

text: Generic

text: Peripheral Blood Lymphocytes

characteristic: cell type

text: Homo sapiens

text: Mate-pair paired-end genomic DNA libraries

characteristic: protocol

text: Human Peripheral Blood Lymphocytes

text: Mate-Pair reads_chr20_gaps


text: live

text: Generic

characteristic: NCBI submission model

text: Peripheral Blood Lymphocytes

text: Homo sapiens

text: MBD (his-MBD2b antibody)

text: Human Peripheral Blood Lymphocytes


text: live

text: Generic

characteristic: NCBI submission package

text: Peripheral Blood Lymphocytes

text: Homo sapiens

text: RE ENZYME HpaII

text: Human Peripheral Blood Lymphocytes

text: Human_Peripheral_Blood_Lymphocytes_MRE-Seq


text: live

text: Generic

text: Peripheral Blood Lymphocytes

text: Homo sapiens

text: ChIP (polyclonal H3K27me3 antibody, Cat # 39155, Abcam Plc)

text: Human Peripheral Blood Lymphocytes

text: H3K27me3_Human_Peripheral_Blood_Lymphocytes

characteristic: title


text: live

text: Generic

text: Homo sapiens

text: ChIP (polyclonal IgG antibody, Cat # kch-819-015 Diagenode or 2729S: Cell Signalling Tech)

text: Human Peripheral Blood Lymphocytes

text: Cebrellum

characteristic: tissue


text: live

text: Generic

text: Homo sapiens

text: Human Cerebellum tissue (Cat # TCB-4098, Capital Biosciences USA)

text: Cebrellum


text: live

text: Generic

text: Homo sapiens

text: MBD (his-MBD2b antibody)

text: Cebrellum


text: Zhiyong Wang lab, Department of Plant Biology, Carnegie Institution for Science

text: live

text: Generic

characteristic: ecotype

text: wild type

characteristic: genotype/variation

text: Arabidopsis thaliana

text: Hypocotyl


text: live

text: Generic

text: Arabidopsis thaliana

text: Hypocotyl


text: UCSD Drosophila Species Stock Center

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

characteristic: bio material

characteristic: collection date

text: USA

characteristic: country

text: Donated by Muneo Matsuda (11/30/2003). This stock has the following: 2nd chromosome homozygous for standard arragement. 3rd chromosome homozygous for ln(3L)A. Chromosomes 2 and 3 segregated at the University of Texas. Then donated to Moriwaki in 1951. In 1967, Tobari made two inbred lines, AAAA and BBBB, by 10 pair mating generations. He obtain an hybrid from a pair mating between the two lines. Then single F1 flies were repeated backcrossing to BBBB strain for six generations: AABBg1 was established. The AABBg1 stock was derived from a single chromosome. The procedure of making the inbred stock is published in Tobari and Kojima (1967). Then the stock was maintained as a small mass culture for 35 years. In 2003 it was inbred for single pair mating during two generations.

characteristic: description

text: Matsuda, M.

characteristic: donor

characteristic: genotype

text: USA: Hawaii

text: Identified by donor

characteristic: identified-by

text: Cornmeal

characteristic: isolation and growth condition

text: Inbred line

characteristic: isolation-source

text: Matsuda (AABBg1)

characteristic: old stock #

text: Drosophila ananassae

characteristic: stock number

text: Drosophila ananassae - UCSD Drosophila Species Stock Center 14024-0371.13


characteristic: External Id

text: UCSD Drosophila Species Stock Center

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: UCSD Drosophila Species Stock Center

text: Stock purchased from the Bloomington Stock Center (06/2005). It was originally donated to Bloomington by Jim Kennison in 09/01/1994. With FlyBase ID FBst0002057

text: Kaufman, T.

text: Dmel\y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]

text: Identified by donor

text: Cornmeal

text: Unknown source

text: (Bloomington 2057) Genome project WGS strain

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster - UCSD Drosophila Species Stock Center 14021-0231.36


text: UCSD Drosophila Species Stock Center

text: live

text: Generic

characteristic: NCBI submission package

text: UCSD Drosophila Species Stock Center

characteristic: bio material

characteristic: collection date

text: USA

text: Donated by Carlos Machado (01/2004). Identifed by Mohamed Noor using polytene chromosomes. This stock was inbred 15 generations by Carlos Machado (2003).

text: Machado, C.

text: Dper\wild-type

text: Mount St. Helena, California

text: Identified by donor

text: Banana

text: Inbred line

text: 38.65303333 N 122.59925 W

characteristic: lat lon

text: Drosophila persimilis

text: Drosophila persimilis - UCSD Drosophila Species Stock Center 14011-0111.49

characteristic: title


text: UCSD Drosophila Species Stock Center

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: Viet Nam

characteristic: country

text: Donated by Artyom Kopp (10/29/2009). He obtained this culture from Hisaki Takamori.

characteristic: description

text: Kopp, A.

characteristic: donor

text: Drho\wild-type

characteristic: genotype

text: Identified by donor

characteristic: identified-by

text: Cornmeal

text: Unknown source

text: (kopp) BaVi067GENOME

text: Drosophila rhopaloa

text: Drosophila rhopaloa - UCSD Drosophila Species Stock Center 14029-0021.01


characteristic: External Id

text: UCSD Drosophila Species Stock Center

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: Sao Tome and Principe: (1998)

text: Donated by Peter Andolfatto from Princeton University (03/2010). This culture was donated by Manyuan Long to Dr. Andolfatto. It was full-sib inbred 15 generations in the Andolfatto lab.

text: Andolfatto, P.

text: Dsto\wild-type

text: Identified by donor

text: Cornmeal

characteristic: isolation and growth condition

text: Inbred line

characteristic: isolation-source

text: (Andolfatto)STO-CAGO 1402-3

characteristic: old stock #

text: Drosophila santomea

characteristic: stock number

text: Drosophila santomea - UCSD Drosophila Species Stock Center 14021-0271.01


text: UCSD Drosophila Species Stock Center

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: UCSD Drosophila Species Stock Center

text: Seychelles

text: Donated by Corbin Jones (11/2003). This line name C started from Robertson female obtained from Jerry Coyne. Inbred three generations by Corbin Jones. Inbred six generations by Castrezana in the Stock Center (2004). TOTAL OF NINE GENERATIONS INBRED.

text: Jones, C.

text: Dsec\wild-type

text: Cousin Island

text: Identified by donor

text: Cornmeal

text: Inbred line

text: (Jones) Robertson 3C

text: Drosophila sechellia

text: Drosophila sechellia - UCSD Drosophila Species Stock Center 14021-0248.25


text: UCSD Drosophila Species Stock Center

text: live

text: Generic

characteristic: NCBI submission package

text: UCSD Drosophila Species Stock Center

characteristic: bio material

characteristic: collection date

text: USA

text: Donated by David Begun (06/18/2004). This stock was inbred 10 generations (sib-mating) from a single inseminated female by David Begun.

text: Begun, D.

text: Dsim\wild-type

text: Wolfskill Orchand, Winters, California

text: Identified by donor

text: Cornmeal

text: Inbred line

text: (Begun) sim6

text: Drosophila simulans

characteristic: organism

text: Drosophila simulans - UCSD Drosophila Species Stock Center 14021-0251.194


text: UCSD Drosophila Species Stock Center

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: USA

characteristic: country

text: Donated by David Begun (06/18/2004). Strain simw501 carries a white-eye mutation. It has been in culture since mid 20th century. Likely descended from a female collected in North America. The strain used for sequencing was sib-mated for nine generations by D. Barbash.

characteristic: description

text: Begun, D.

characteristic: donor

text: Identified by donor

text: Cornmeal

text: Inbred line

text: (Begun) simw501

text: Drosophila simulans

text: Drosophila simulans - UCSD Drosophila Species Stock Center 14021-0251.195

characteristic: title


characteristic: External Id

text: UCSD Drosophila Species Stock Center

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: Madagascar

text: Donated by David Begun (06/18/2004). Originally maintained as isofemale line. It was cured of Wolbachia by tetracycline. Five generations inbred in Ballards lab. Five generations by David Begun.

text: Begun, D.

text: Dsim\wild-type

characteristic: genotype

text: Ansirabe

text: Identified by donor

characteristic: identified-by

text: Cornmeal

characteristic: isolation and growth condition

text: Inbred line

text: (Begun) simMD106TS

text: Drosophila simulans

text: Drosophila simulans - UCSD Drosophila Species Stock Center 14021-0251.196


text: UCSD Drosophila Species Stock Center

characteristic: INSDC center name

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: Cambodia

text: 11 generations full-sib inbred from Drosophila Stock Center culture 14023-0361.00 and donated by Artyom Kopp (09/08/2009).

text: Kopp, A.

text: Dbii\wild-type

text: Ari Ksatr

text: Identified by donor

text: Cornmeal

text: Inbred line

characteristic: isolation-source

text: (Kopp) 361.0-iso11 l-11 GENOME strain 1

characteristic: old stock #

text: Drosophila biarmipes

characteristic: stock number

text: Drosophila biarmipes - UCSD Drosophila Species Stock Center 14023-0361.10


text: UCSD Drosophila Species Stock Center

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: UCSD Drosophila Species Stock Center

text: Madagascar

text: Donated by David Begun (06/18/2004). Originally maintained as isofemale line. Five generations inbred in Ballards lab. Five generations by David Begun.

text: Begun, D.

text: Dsim\wild-type

text: Joffreville

text: Identified by donor

text: Cornmeal

text: Inbred line

text: (Begun) simMD199S

text: Drosophila simulans

text: Drosophila simulans - UCSD Drosophila Species Stock Center 14021-0251.197


text: UCSD Drosophila Species Stock Center

text: live

text: Generic

characteristic: NCBI submission package

text: UCSD Drosophila Species Stock Center

characteristic: bio material

characteristic: collection date

text: New Caledonia

text: Donated by David Begun (06/18/2004). Five generations inbred in Ballards lab. Five generations by David Begun.

text: Begun, D.

text: Dsim\wild-type

text: Noumea

text: Identified by donor

text: Cornmeal

text: Inbred line

text: (Begun) simNC48S

text: Drosophila simulans

characteristic: organism

text: Drosophila simulans - UCSD Drosophila Species Stock Center 14021-0251.198


text: UCSD Drosophila Species Stock Center

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: Kenya

characteristic: country

text: Donated by David Begun (06/18/2004). THIS STOCK PRODUCES FERTILE FEMALE OFFSPRING WITH MELANOGASTER. Inbred 13 generations in Ashburner lab.

characteristic: description

text: Begun, D.

characteristic: donor

text: Dsim\wild-type

text: Nanyuki

text: Identified by donor

text: Cornmeal

text: Inbred line

text: (Begun) simC167.4

text: Drosophila simulans

text: Drosophila simulans - UCSD Drosophila Species Stock Center 14021-0251.199

characteristic: title


characteristic: External Id

text: UCSD Drosophila Species Stock Center

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: USA

text: Donated by David Begun (06/18/2004). Sib mated for 10 generations by David Begun. Corbin Jones found this stock is mislabeled, this is Begun's sim4 and related to the line sim6, which is from Winters, California. Label corrections (03/10/2010).

text: Begun, D.

text: Dsim\wild-type

characteristic: genotype

text: Wolfskill Orchand, Winters, California

text: Identified by donor

characteristic: identified-by

text: Cornmeal

characteristic: isolation and growth condition

text: Inbred line

text: (Begun) sim4

text: Drosophila simulans

text: Drosophila simulans - UCSD Drosophila Species Stock Center 14021-0251.216


text: UCSD Drosophila Species Stock Center

characteristic: INSDC center name

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: Taiwan

text: 13 generations full-sib inbred from the Drosophila Stock Center culture 14022-0311.05 and donated by Artyom Kopp (10/29/2009).

text: Kopp, A.

text: Dtak\wild-type

text: Yun Shui

text: Identified by donor

text: Cornmeal

text: Inbred line

characteristic: isolation-source

text: (Kopp) 311.05-iso4 I13

characteristic: old stock #

text: Drosophila takahashii

characteristic: stock number

text: Drosophila takahashii - UCSD Drosophila Species Stock Center 14022-0311.13


text: UCSD Drosophila Species Stock Center

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: UCSD Drosophila Species Stock Center

text: Stock donated by Bryant McAllister (10/2003). This stock was inbred 14 generations from mutant stock # 15010-1051.46 by Bryant McAllister. Then, two generations inbred in the Stock Center by Castrezana (01/2004).

text: McAllister, B.

text: Dvir\b[1]; tb[1] gp?L2[1]; cd[1]; pe[1]

text: Identified by donor

text: Cornmeal

text: Inbred line

text: (McAllister) V46

text: Drosophila virilis

text: Drosophila virilis - UCSD Drosophila Species Stock Center 15010-1051.87


text: UCSD Drosophila Species Stock Center

text: live

text: Generic

characteristic: NCBI submission package

text: UCSD Drosophila Species Stock Center

characteristic: bio material

text: France

text: Donated by Jeffrey Powell (12/2003). This stock was inbred 4 generations by Jeff Powell (12/2003). Then, 5 generations inbred by Castrezana in the Stock Center (7/23/2004). Jeff Powell obtained the strain from Lee Ehrman in 1990. This isofemale strain was found to be homokaryotypic by Vera Valente.

text: Dwil\wild-type

text: Guadaloupe Island

text: Cornmeal

text: Inbred line

text: (Powell) Gd-H4-1

text: Drosophila willistoni

characteristic: organism

text: Drosophila willistoni - UCSD Drosophila Species Stock Center 14030-0811.24


text: UCSD Drosophila Species Stock Center

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

characteristic: collection date

text: Liberia

characteristic: country

text: Donated by David Begun (06/18/2004). Stock inbred 7 generations in Coyne's lab (2001). Then, Llopart established a homokaryotypic (2Rn) subline from a single pair mating.

characteristic: description

text: Begun, D.

characteristic: donor

text: Dyak\wild-type

text: Between Liberia and Ivory Coast

text: Identified by donor

text: Cornmeal

text: Inbred line

text: (Begun) Tai18E2

text: Drosophila yakuba

text: Drosophila yakuba - UCSD Drosophila Species Stock Center 14021-0261.01


characteristic: External Id

text: UCSD Drosophila Species Stock Center

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: Taiwan

text: 18 generations full-sib inbred and donated by Artyom Kopp (10/29/2009).

text: Kopp, A.

text: Dbip\wild-type

characteristic: genotype

text: Chia-i

text: Identified by donor

characteristic: identified-by

text: Cornmeal

text: Unknown source

text: (Kopp) 381.3-isoA l18

text: Drosophila bipectinata

text: Drosophila bipectinata - UCSD Drosophila Species Stock Center 14024-0381.19

characteristic: title


text: UCSD Drosophila Species Stock Center

characteristic: INSDC center name

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: Hong Kong

text: 11 generations full-sib inbred and donated by Artyom Kopp (10/29/2009). Dr. Kopp obtained the original line from John True. Probably, the original line collector is Masahito Kimura.

text: Kopp, A.

text: Dele\wild-type

text: Identified by donor

text: Cornmeal

characteristic: isolation and growth condition

text: Inbred line

characteristic: isolation-source

text: (Kopp) KHK-iso1 l-11

characteristic: old stock #

text: Drosophila elegans

text: Drosophila elegans - UCSD Drosophila Species Stock Center 14027-0461.03


text: UCSD Drosophila Species Stock Center

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: UCSD Drosophila Species Stock Center

text: Stock 14021-0224.00 inbred 8 generations by Castrezana in the Tucson Stock Center. This stock had a tetracycline treatment (8/23/04).

text: Tucson Stock Center

text: Dere\wild-type

text: Identified by donor

text: Cornmeal

text: Inbred line

text: (TSC) genome

text: Drosophila erecta

characteristic: stock number

text: Drosophila erecta - UCSD Drosophila Species Stock Center 14021-0224.01


text: UCSD Drosophila Species Stock Center

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: UCSD Drosophila Species Stock Center

characteristic: bio material

text: Brunei

text: 11 generations full-sib inbred and donated by Artyom Kopp (10/29/2009).

text: Kopp, A.

text: Deug\wild-type

text: Kuala Belalong, Ulu Temburong National Park

text: Identified by donor

text: Cornmeal

text: Inbred line

text: Drosophila eugracilis

characteristic: organism

text: Drosophila eugracilis - UCSD Drosophila Species Stock Center 14026-0451.10


text: UCSD Drosophila Species Stock Center

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

characteristic: collection date

text: Taiwan

characteristic: country

text: 10 generations full-sib inbred from the Drosophila Stock Center culture 14025-0441.00 and donated by Artyom Kopp (10/29/2009).

characteristic: description

text: Kopp, A.

characteristic: donor

text: Dfic\wild-type

text: Identified by donor

text: Cornmeal

text: Inbred line

text: (Kopp) 631.0-iso1 l-10

text: Drosophila ficusphila

text: Drosophila ficusphila - UCSD Drosophila Species Stock Center 14025-0441.05


characteristic: External Id

text: UCSD Drosophila Species Stock Center

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: USA

text: Live culture decommissioned due to culturing problems (06/2008). Preserved individuals maintained at -80C. Only six individuals per order.

text: Kaneshiro, K.

text: Dgri\wild-type

characteristic: genotype

text: Auwahi, Maui

text: Unknown source of identification

characteristic: identified-by

text: ETHANOL PRESERVED

text: Unknown source

text: Drosophila grimshawi

text: Drosophila grimshawi - UCSD Drosophila Species Stock Center 15287-2541.00

characteristic: title


text: UCSD Drosophila Species Stock Center

characteristic: INSDC center name

text: live

text: Generic

text: UCSD Drosophila Species Stock Center

text: Colombia

text: 10 generations full-sib inbred from the Drosophila Stock Center culture 14028-0561.00 and donated by Artyom Kopp (10/29/2009).

text: Kopp, A.

text: Dkik\wild-type

text: Caroline Island, Leticia

text: Identified by donor

text: Cornmeal

characteristic: isolation and growth condition

text: Inbred line

characteristic: isolation-source

text: (Kopp) 561.0-iso4 l-10

characteristic: old stock #

text: Drosophila kikkawai

text: Drosophila kikkawai - UCSD Drosophila Species Stock Center 14028-0561.14


text: Howard Hughes Medical Institute at Children's Hospital Boston

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: HTGTS F1 Data. F1 mice were generated by crossing BABL/cJ and 129S6. For F1 cells, a retroviral construct containing DEL-CJ substrate was used (Bredemeyer et al., 2006). Integration sites were cloned as described (Mahowald et al., 2009).

text: Mus musculus musculus


Atlantic salmon skin RNA

text: University of Aberdeen

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Eight salmon (300-400g) reared in salt water and eight parr (~150g) from freshwater were randomly selected for sampling and humanely killed with a sharp blow on the head. Skin samples (&lt;100mg) were collected from the dorsal-anterior site of the fish, transferred to 1ml RNAlater solution (Applied Biosystems, Warrington, UK) and stored at 4*C for 24 h and then at -80*C until RNA extraction. Total RNA was extracted from the skin samples using the TRI reagent according to the manufacturer’s recommendations. The final sample used for Roche 454 sequencing was an equimolar mixture of all these samples.

text: Salmo salar

characteristic: organism

text: Atlantic salmon skin RNA


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

characteristic: cell type

text: Homo sapiens

text: PBMCs from CF patient 1

text: Untreated PBMC-CF patient D1-2

text: Untreated

characteristic: treatment


characteristic: External Id

text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 1

text: Treated with Flageline at 0.25 ug/ml for 4 hours-PBMC-CF patient D1-2

text: Flagelline at 0.25 ug/ml for 4 hours


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 1

text: Treated with 0.25 ug/ml of Flageline and 20 ug/ml of 1018 for 4 hours. PBMC-CF patient D1-2

text: Flagelline at 0.25 ug/ml for 4 hours and 20 ug/ml of IDR-1018


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 2

text: Untreated PBMC-CF patient D-2

text: Untreated


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 2

text: Treated with Flageline at 0.25 ug/ml for 4 hours-PBMC-CF patient D-2

text: Flagelline at 0.25 ug/ml for 4 hours


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 2

text: Treated with 0.25 ug/ml of Flageline and 20 ug/ml of 1018 for 4 hours. PBMC-CF patient D-2


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 3

text: Untreated PBMC-CF patient D-3

text: Untreated


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 3

text: Treated with Flageline at 0.25 ug/ml for 4 hours-PBMC-CF patient D-3

text: Flagelline at 0.25 ug/ml for 4 hours


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 3

text: Treated with 0.25 ug/ml of Flageline and 20 ug/ml of 1018 for 4 hours. PBMC-CF patient D-3


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 4

text: Untreated PBMC-CF patient D-4

text: Untreated


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 4

text: Treated with Flageline at 0.25 ug/ml for 4 hours-PBMC-CF patient D-4

text: Flagelline at 0.25 ug/ml for 4 hours


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 4

text: Treated with 0.25 ug/ml of Flageline and 20 ug/ml of 1018 for 4 hours. PBMC-CF patient D-4


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 5

text: Untreated PBMC-CF patient D-5

text: Untreated


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 5

text: Treated with Flageline at 0.25 ug/ml for 4 hours-PBMC-CF patient D-5

text: Flagelline at 0.25 ug/ml for 4 hours


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 1

text: Treated with Flageline at 0.25 ug/ml for 4 hours-PBMC-CF patient D1-2-27

text: Flagelline at 0.25 ug/ml for 4 hours


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 1

text: Treated with Flageline at 0.25 ug/ml for 4 hours-PBMC-CF patient D1-2-32

text: Flagelline at 0.25 ug/ml for 4 hours


text: CMDR, University of British Columbia

text: live

text: Generic

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: PBMCs from CF patient 1

text: Treated with Flageline at 0.25 ug/ml for 4 hours-PBMC-CF patient D1-2-33

text: Flagelline at 0.25 ug/ml for 4 hours


text: Neurogenetics, Genetics Medicine, SA Pathology

text: live

text: Generic

text: UPF2 Patient

characteristic: affected status

text: B-LCL

characteristic: cell line

text: Homo sapiens

text: Lymphoblastoid cell line

text: Patient 1


characteristic: INSDC center name

text: live

text: Generic

text: UPF2 Patient

text: B-LCL

text: Homo sapiens

text: Lymphoblastoid cell line

text: Patient 2

characteristic: title


text: NIAMS

text: live

text: Generic

text: CD43- resting B cells were isolated from mouse spleens by negative selection with magnetic beads (Miltenyi Biotech). Following isolation, resting B cells were stimulated with LPS (50 mcg/ml) and IL-4 (2.5 ng/ml) for 72 hrs.

characteristic: description

text: Mus musculus

text: In vitro activated B cells overexpressing AID (IgkAID) and missing 53BP1 (53BP1-/-)


Pt 1 G3

text: Beth Israel Deaconess Medical Center

text: live

text: Generic

text: Gleason 3 glands isolated from the prostate of patient 1 by laser capture microdissection

text: Homo sapiens

text: Patient 1 Gleason 3


Pt 1 G4

text: Beth Israel Deaconess Medical Center

text: live

text: Generic

text: Gleason 4 glands isolated from the prostate of patient 1 by laser capture microdissection

text: Homo sapiens

text: Patient 1 Gleason 4


Pt 2 G3

text: Beth Israel Deaconess Medical Center

text: live

text: Generic

text: Gleason 3 glands isolated from the prostate of patient 2 by laser capture microdissection

text: Homo sapiens

text: Patient 2 G3


Pt 2 G4

text: Beth Israel Deaconess Medical Center

text: live

text: Generic

text: Gleason 4 glands isolated from the prostate of patient 2 by laser capture microdissection

text: Homo sapiens

text: Patient 2 G4


Pt 3 G3

text: Beth Israel Deaconess Medical Center

text: live

text: Generic

text: Gleason 3 glands isolated from the prostate of patient 3 by laser capture microdissection63221

text: Homo sapiens

text: Patient 3 G3


Pt 3 G4

text: Beth Israel Deaconess Medical Center

text: live

text: Generic

text: Gleason 4 glands isolated from the prostate of patient 3 by laser capture microdissection

text: Homo sapiens

text: Patient 3 G4


Pt 4 G3

text: Beth Israel Deaconess Medical Center

text: live

text: Generic

text: Gleason 3 glands isolated from the prostate of patient 4 by laser capture microdissection

text: Homo sapiens

text: Patient 4 G3


Pt 4 G4

text: Beth Israel Deaconess Medical Center

text: live

text: Generic

text: Gleason 4 glands isolated from the prostate of patient 4 by laser capture microdissection

text: Homo sapiens

text: Patient 4 G4


C. elegans L2

text: Stanford University

text: live

text: Generic

text: Caenorhabditis elegans

text: Caenorhabditis elegans synchronized population: L2


C. elegans L3

text: Stanford University

text: live

text: Generic

text: Caenorhabditis elegans

text: Caenorhabditis elegans synchronized population: L3


C. elegans L4

text: Stanford University

text: live

text: Generic

text: Caenorhabditis elegans

text: Caenorhabditis elegans synchronized population: L4


HeLa cells

text: Stanford University

text: live

text: Generic

text: Homo sapiens

text: HeLa cells


text: NIAMS

text: live

text: Generic

text: Mus musculus

text: in vitro activated B cells missing 53BP1 (53BP1-/-)


text: NIAMS

text: live

text: Generic

text: Mus musculus

text: in vitro activated mouse B cells


text: NIAMS

text: live

text: Generic

text: Mus musculus

text: in vitro activated mouse B cells


text: NIAMS

text: live

text: Generic

text: Mus musculus

text: in vitro activated mouse B cells (AID-/- 53BP1-/-)


KI-42 Sample

text: live

text: Generic

text: *** SUBMISSION RECORD WAS PREPARED BY DATA2BIO ON BEHALF OF JOHN GREAVES (JOHN.GREAVES@KEMIN.COM), KEMIN INDUSTRIES, INC. *** KI-MsEM0042 was selected as an individual plant from a segregating population of spearmint plants based on its very high level (&gt;9% on a dry matter basis) of rosmarinic acid. Publically available segregating seed was planted in the greenhouse and plants were grown to a point where leaf tissue could be harvested. Leaf tissue was ground and extracted using solvents and rosmarinic acid levels of each plant in the population were compared to a purchased standard using a validated HPLC method. Vegetative cuttings of each greenhouse-grown plant were planted in the field for verification. Of 35 individual high rosmarinic acid plants selected from the population of &gt;200 plants, KI-MsEM0042 showed excellent vigorous growth which makes it an agronomically feasible crop to grow. Rhizomes of KI-MsEM0042 were used to vegetatively propagate this plant into a unique clonal line. The KI-MsEM0042 clonal line was tested under field conditions which confirmed the agronomic feasibility of this unique clonal line to produce rosmarinic acid in its leaf tissue at sufficient quantities to allow for economic extraction. KI-MsEM0042 was fully sequenced at the DNA level. Fresh leaves were grounded to fine powder using liquid nitrogen. Total gDNA was isolated using Qiagen DNeasy plant mini kit (Qiagen Cat# 69104)

text: Mentha spicata


KI-110 Sample

text: live

text: Generic

text: *** SUBMISSION RECORD WAS PREPARED BY DATA2BIO ON BEHALF OF JOHN GREAVES (JOHN.GREAVES@KEMIN.COM), KEMIN INDUSTRIES, INC. *** KI-MsEM0110 was selected as an individual plant from a segregating population of spearmint plants based on its very high level (&gt;9% on a dry matter basis) of rosmarinic acid. Publically available segregating seed was planted in the greenhouse and plants were grown to a point where leaf tissue could be harvested. Leaf tissue was ground and extracted using solvents and rosmarinic acid levels of each plant in the population were compared to a purchased standard using a validated HPLC method. Vegetative cuttings of each greenhouse-grown plant were planted in the field for verification. Of 35 individual high rosmarinic acid plants selected from the population of &gt;200 plants, KI-MsEM0110 showed excellent vigorous growth which makes it an agronomically feasible crop to grow. Rhizomes of KI-MsEM0110 were used to vegetatively propagate this plant into a unique clonal line. The KI-MsEM0110 clonal line was tested under field conditions which confirmed the agronomic feasibility of this unique clonal line to produce rosmarinic acid in its leaf tissue at sufficient quantities to allow for economic extraction. KI-MsEM0110 was fully sequenced at the DNA level. Fresh leaves were grounded to fine powder using liquid nitrogen. Total gDNA was isolated using Qiagen DNeasy plant mini kit (Qiagen Cat# 69104)

text: Mentha spicata


text: DOE Joint Genome Institute

text: live

text: Generic

text: King George Island site S2 sample ANT 05_23.45m

text: marine metagenome

characteristic: sample number

text: Generic sample from marine metagenome


text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: Generic

text: King George Island site S2 sample ANT 04_23.45m

text: marine metagenome

text: Generic sample from marine metagenome


transcriptomic data of papline

text: National Botanical Research Institute

characteristic: INSDC last update

text: live

text: Generic

text: Papaver somniferum

text: Comparative Transcriptome Analysis of Wild Type and pap1 Mutant of Papaver somnifera Using 454-Sequencing Platform


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Tierra del Fuego site MC sample ARG 01_11.3m

text: marine metagenome

text: Generic sample from marine metagenome


text: VIB - KULeuven

text: live

characteristic: INSDC status

text: Generic

text: Saccharomyces cerevisiae

text: VR1-5B Parent


text: VIB - KULeuven

text: live

text: Generic

characteristic: SRA accession

text: Saccharomyces cerevisiae

text: Pool1 - 16% ethanol tolerance


text: VIB - KULeuven

text: live

text: Generic

characteristic: NCBI submission model

text: Saccharomyces cerevisiae

text: Poll2 - 17% ethanol tolerance


text: Centre National de la Recherche Scientifique - Information Genomique et Structurale

text: live

text: Generic

characteristic: NCBI submission package

text: Branchiostoma lanceolatum

text: Sequencing and analysis of the Mediterranean amphioxus (Branchiostoma lanceolatum) transcriptome


text: DOE Joint Genome Institute

text: live

text: Generic

text: King George Island site S1 sample ANT 02_9.5m

text: marine metagenome

characteristic: organism

text: Generic sample from marine metagenome


text: Biochemistry and Molecular Biology, University of Southern Denmark

text: live

text: Generic

text: Jakobsson et al. 2009

characteristic: antibody vendor/provider

text: LXR

characteristic: chip

text: female

characteristic: gender

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: C57BL/6 wild type mouse liver

characteristic: strain

text: liver

characteristic: tissue

text: LXR ChIP WT Bexarotene

text: Bexarotene


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Jakobsson et al. 2009

text: LXR

text: female

text: wild type

text: Mus musculus

text: C57BL/6 wild type mouse liver

text: liver

text: LXR ChIP WT Control

characteristic: title

text: Control

characteristic: treatment


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Jakobsson et al. 2009

text: LXR

text: female

text: wild type

text: Mus musculus

text: C57BL/6 wild type mouse liver

text: liver

text: LXR ChIP WT T0901317


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Santa Cruz

text: PPARalpha

text: female

text: wild type

text: Mus musculus

text: C57BL/6 wild type mouse liver

text: liver

text: PPARalpha ChIP WT Control

text: Control


text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Santa Cruz

text: PPARalpha

text: female

text: LXRdKO

text: Mus musculus

text: C57BL/6 LXRdKO mouse liver

text: liver

text: PPARalpha ChIP LXRdKO Control

text: Control


text: live

text: Generic

characteristic: NCBI submission package

text: Santa Cruz

text: RXR

text: female

text: wild type

text: Mus musculus

characteristic: organism

text: C57BL/6 wild type mouse liver

text: liver

text: RXR ChIP WT Bexarotene

text: Bexarotene


text: live

text: Generic

text: Santa Cruz

characteristic: antibody vendor/provider

text: RXR

characteristic: chip

text: female

text: wild type

text: Mus musculus

text: C57BL/6 wild type mouse liver

text: liver

text: RXR ChIP WT Control

text: Control


text: live

text: Generic

text: Santa Cruz

text: RXR

text: female

characteristic: gender

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: C57BL/6 wild type mouse liver

text: liver

text: RXR ChIP WT T0901317


text: live

text: Generic

text: Santa Cruz

text: RXR

text: female

text: LXRdKO

text: Mus musculus

text: C57BL/6 LXRdKO mouse liver

characteristic: strain

text: liver

characteristic: tissue

text: RXR ChIP LXRdKO Bexarotene

text: Bexarotene


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Santa Cruz

text: RXR

text: female

text: LXRdKO

text: Mus musculus

text: C57BL/6 LXRdKO mouse liver

text: liver

text: RXR ChIP LXRdKO Control

text: Control


text: live

text: Generic

text: Santa Cruz

text: RXR

text: female

text: LXRdKO

text: Mus musculus

text: C57BL/6 LXRdKO mouse liver

text: liver

text: RXR ChIP LXRdKO T0901317

characteristic: title

characteristic: treatment


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Diagenode

text: RNA Polymerase II

text: female

text: wild type

text: Mus musculus

text: C57BL/6 wild type mouse liver

text: liver

text: RNAPolII ChIP WT Control replicate 1

text: Control


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Diagenode

text: RNA Polymerase II

text: female

text: wild type

text: Mus musculus

text: C57BL/6 wild type mouse liver

text: liver

text: RNAPolII ChIP WT Control replicate 2

text: Control


text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Diagenode

text: RNA Polymerase II

text: female

text: wild type

text: Mus musculus

text: C57BL/6 wild type mouse liver

text: liver

text: RNAPolII ChIP WT Bexarotene replicate 1

text: Bexarotene


text: live

text: Generic

characteristic: NCBI submission package

text: Diagenode

text: RNA Polymerase II

text: female

text: wild type

text: Mus musculus

characteristic: organism

text: C57BL/6 wild type mouse liver

text: liver

text: RNAPolII ChIP WT Bexarotene replicate 2

text: Bexarotene


text: live

text: Generic

text: Diagenode

characteristic: antibody vendor/provider

text: RNA Polymerase II

characteristic: chip

text: female

text: wild type

text: Mus musculus

text: C57BL/6 wild type mouse liver

text: liver

text: RNAPolII ChIP WT T0901317 replicate 1


text: live

text: Generic

text: Diagenode

text: RNA Polymerase II

text: female

characteristic: gender

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: C57BL/6 wild type mouse liver

text: liver

text: RNAPolII ChIP WT T0901317 replicate 2


text: live

text: Generic

text: Diagenode

text: RNA Polymerase II

text: female

text: LXRdKO

text: Mus musculus

text: C57BL/6 LXRdKO mouse liver

characteristic: strain

text: liver

characteristic: tissue

text: RNAPolII ChIP LXRdKO Control replicate 1

text: Control


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Diagenode

text: RNA Polymerase II

text: female

text: LXRdKO

text: Mus musculus

text: C57BL/6 LXRdKO mouse liver

text: liver

text: RNAPolII ChIP LXRdKO Control replicate 2

text: Control


text: live

text: Generic

text: Diagenode

text: RNA Polymerase II

text: female

text: LXRdKO

text: Mus musculus

text: C57BL/6 LXRdKO mouse liver

text: liver

text: RNAPolII ChIP LXRdKO Bexarotene replicate 1

characteristic: title

text: Bexarotene

characteristic: treatment


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Diagenode

text: RNA Polymerase II

text: female

text: LXRdKO

text: Mus musculus

text: C57BL/6 LXRdKO mouse liver

text: liver

text: RNAPolII ChIP LXRdKO Bexarotene replicate 2

text: Bexarotene


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Diagenode

text: RNA Polymerase II

text: female

text: LXRdKO

text: Mus musculus

text: C57BL/6 LXRdKO mouse liver

text: liver

text: RNAPolII ChIP LXRdKO T0901317 replicate 1


text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Diagenode

text: RNA Polymerase II

text: female

text: LXRdKO

text: Mus musculus

text: C57BL/6 LXRdKO mouse liver

text: liver

text: RNAPolII ChIP LXRdKO T0901317 replicate 2


text: Biochemistry and Molecular Genetics, University of Illinois at Chicago

text: live

text: Generic

characteristic: NCBI submission package

text: embryonic stem cells

characteristic: cell type

text: Anti-trimethyl-Histone H3 (Lys4)

characteristic: chip antibody

text: Upstate Tech

characteristic: chip antibody vendor

text: Rbp2 f/f wild type

text: Mus musculus

characteristic: organism

text: Rbp2 f/f ES cells

text: Rbp2 WT_H3K4me3_ChIPSeq


text: live

text: Generic

text: embryonic stem cells

text: Anti-trimethyl-Histone H3 (Lys4)

text: Upstate Tech

text: Rbp2 -/- knockout

characteristic: genotype/variation

text: Mus musculus

text: Rbp2 KO ES cells

characteristic: strain

text: Rbp2 KO_H3K4me3_ChIPSeq


characteristic: External Id

text: live

text: Generic

text: embryonic stem cells

text: Rbp2 f/f wild type

text: Mus musculus

text: Rbp2 f/f ES cells

text: input DNA


text: Non-coding, Molecular Biology and Genetics, Izmir Institute of Technology

characteristic: INSDC center name

text: live

text: Generic

text: Apoptosis Negative

characteristic: apoptosis

text: Jurkat T-cell Lymphocyte

text: Homo sapiens

text: insensitive (JAN)

text: insensitive (JAN)

text: Camptothecin Treated


text: live

text: Generic

text: Apoptosis Positive

text: Jurkat T-cell Lymphocyte

text: Homo sapiens

text: drug-sensitive (JAP)

text: drug-sensitive (JAP)

characteristic: title

text: Camptothecin Treated

characteristic: treatment


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Apoptosis Negative

text: Jurkat T-cell Lymphocyte

text: Homo sapiens

text: control (JNN)

text: control (JNN)

text: No Camptothecin


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 0-1h old embryo

characteristic: age

text: mRNP fraction

characteristic: fraction

text: Drosophila melanogaster