text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: African Ancestry in Southwest USA

characteristic: Population Description

text: AFR

characteristic: Super Population Code

text: African

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA19922

text: Homo sapiens

text: ASW

text: father

text: male

text: Coriell GM19922


status: PUBLIC

tag: attribute

characteristic: Coriell panel

characteristic: DNA id

characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: African Ancestry in Southwest USA

characteristic: SRA accession

text: AFR

text: African

text: Human HapMap individual NA19923

characteristic: description

characteristic: family id

text: Homo sapiens

characteristic: organism

text: ASW

characteristic: population

text: mother

characteristic: relationship

text: female

characteristic: sex

text: Coriell GM19923

characteristic: title


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: African Ancestry in Southwest USA

characteristic: Population Description

text: AFR

characteristic: Super Population Code

text: African

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA19984

text: Homo sapiens

text: ASW

text: father

text: male

text: Coriell GM19984


characteristic: Coriell panel

characteristic: DNA id

characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: African Ancestry in Southwest USA

text: AFR

text: African

text: Human HapMap individual NA20298

text: Homo sapiens

text: ASW

text: father

text: male

text: Coriell GM20298


text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: African Ancestry in Southwest USA

characteristic: SRA accession

text: AFR

text: African

text: Human HapMap individual NA20339

characteristic: description

characteristic: family id

text: Homo sapiens

characteristic: organism

text: ASW

characteristic: population

text: mother

characteristic: relationship

text: female

text: Coriell GM20339


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: African Ancestry in Southwest USA

characteristic: Population Description

text: AFR

characteristic: Super Population Code

text: African

text: Human HapMap individual NA20351

text: Homo sapiens

text: ASW

text: father

text: male

characteristic: sex

text: Coriell GM20351

characteristic: title


characteristic: Coriell panel

characteristic: DNA id

characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: African Ancestry in Southwest USA

text: AFR

text: African

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA20412

text: Homo sapiens

text: ASW

text: mother

text: female

text: Coriell GM20412


text: NCBI

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: African Ancestry in Southwest USA

characteristic: SRA accession

text: AFR

text: African

text: Human HapMap individual NA20414

characteristic: description

characteristic: family id

text: Homo sapiens

characteristic: organism

text: ASW

text: mother

text: female

text: Coriell GM20414


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Gujarati Indians in Houston, Texas, USA

characteristic: Population Description

text: SAS

characteristic: Super Population Code

text: South Asian

text: Human HapMap individual NA20863

text: Homo sapiens

text: GIH

characteristic: population

text: male

text: Coriell GM20863


characteristic: Coriell panel

characteristic: DNA id

characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

text: live

text: Generic

text: Gujarati Indians in Houston, Texas, USA

text: SAS

text: South Asian

text: Human HapMap individual NA20864

text: Homo sapiens

text: GIH

text: male

characteristic: sex

text: Coriell GM20864

characteristic: title


text: NCBI

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Gujarati Indians in Houston, Texas, USA

text: SAS

text: South Asian

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA20867

text: Homo sapiens

text: GIH

text: male

text: Coriell GM20867


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Gujarati Indians in Houston, Texas, USA

characteristic: SRA accession

text: SAS

text: South Asian

text: Human HapMap individual NA20868

characteristic: description

text: Homo sapiens

characteristic: organism

text: GIH

text: female

text: Coriell GM20868


characteristic: Coriell panel

text: NCBI

characteristic: INSDC secondary accession

text: live

text: Generic

text: Gujarati Indians in Houston, Texas, USA

characteristic: Population Description

text: SAS

characteristic: Super Population Code

text: South Asian

text: Human HapMap individual NA20905

text: Homo sapiens

text: GIH

characteristic: population

text: male

text: Coriell GM20905


characteristic: DNA id

characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

text: live

text: Generic

text: Gujarati Indians in Houston, Texas, USA

text: SAS

text: South Asian

text: Human HapMap individual NA21087

text: Homo sapiens

text: GIH

text: male

characteristic: sex

text: Coriell GM21087

characteristic: title


text: NCBI

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Gujarati Indians in Houston, Texas, USA

text: SAS

text: South Asian

characteristic: Super Population Description

text: Human HapMap individual NA21093

text: Homo sapiens

text: GIH

text: male

text: Coriell GM21093


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Gujarati Indians in Houston, Texas, USA

characteristic: SRA accession

text: SAS

text: South Asian

characteristic: culture collection

text: Human HapMap individual NA21095

characteristic: description

text: Homo sapiens

text: GIH

text: male

text: Coriell GM21095


characteristic: Coriell panel

text: NCBI

characteristic: INSDC secondary accession

text: live

text: Generic

text: Gujarati Indians in Houston, Texas, USA

characteristic: Population Description

text: SAS

characteristic: Super Population Code

text: South Asian

text: Human HapMap individual NA21114

text: Homo sapiens

characteristic: organism

text: GIH

text: male

text: Coriell GM21114


characteristic: DNA id

characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

text: live

text: Generic

text: Gujarati Indians in Houston, Texas, USA

text: SAS

text: South Asian

text: Human HapMap individual NA21124

text: Homo sapiens

text: GIH

characteristic: population

text: male

characteristic: sex

text: Coriell GM21124


text: NCBI

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Gujarati Indians in Houston, Texas, USA

text: SAS

text: South Asian

text: Human HapMap individual NA21126

text: Homo sapiens

text: GIH

text: male

text: Coriell GM21126

characteristic: title


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Gujarati Indians in Houston, Texas, USA

characteristic: SRA accession

text: SAS

text: South Asian

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA21129

text: Homo sapiens

text: GIH

text: male

text: Coriell GM21129


text: NCBI

characteristic: INSDC secondary accession

text: live

text: Generic

text: Human HapMap individual NA21131

characteristic: description

text: Homo sapiens

text: GIH

text: male

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21132

text: Homo sapiens

characteristic: organism

text: GIH

text: male

text: Generic sample from Homo sapiens


characteristic: External Id

text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21134

text: Homo sapiens

text: GIH

text: male

text: Generic sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21136

text: Homo sapiens

text: GIH

text: male

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21145

text: Homo sapiens

text: GIH

characteristic: population

text: male

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21298

characteristic: family id

text: Homo sapiens

text: MKK

text: father

characteristic: relationship

text: male

characteristic: sex

text: Generic sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Human HapMap individual NA21304

text: Homo sapiens

text: MKK

text: father

text: male

text: Generic sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: Human HapMap individual NA21338

text: Homo sapiens

text: MKK

text: father

text: male

text: Generic sample from Homo sapiens

characteristic: title


characteristic: Coriell cell culture ID

characteristic: Coriell plate

text: NCBI

characteristic: INSDC last update

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA21339

text: Homo sapiens

text: MKK

text: mother

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC secondary accession

text: live

text: Generic

text: Human HapMap individual NA21341

characteristic: description

text: Homo sapiens

characteristic: organism

text: MKK

text: father

text: male

text: Generic sample from Homo sapiens


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21351

text: Homo sapiens

text: MKK

characteristic: population

text: father

text: male

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21409

characteristic: family id

text: Homo sapiens

text: MKK

text: mother

characteristic: relationship

text: female

characteristic: sex

text: Generic sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Human HapMap individual NA21410

text: Homo sapiens

text: MKK

text: father

text: male

text: Generic sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: Human HapMap individual NA21449

text: Homo sapiens

text: MKK

text: mother

text: female

text: Generic sample from Homo sapiens

characteristic: title


text: NCBI

characteristic: INSDC last update

text: live

text: Generic

text: Human HapMap individual NA21450

text: Homo sapiens

text: MKK

text: father

text: male

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

characteristic: SRA accession

text: Human HapMap individual NA21456

text: Homo sapiens

text: MKK

text: father

text: male

text: Generic sample from Homo sapiens


text: NCBI

characteristic: INSDC secondary accession

text: live

text: Generic

text: Human HapMap individual NA21458

text: Homo sapiens

text: MKK

text: father

text: male

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21515

characteristic: description

text: Homo sapiens

text: MKK

text: father

text: male

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21584

text: Homo sapiens

characteristic: organism

text: MKK

text: father

text: male

text: Generic sample from Homo sapiens


characteristic: External Id

text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21622

text: Homo sapiens

text: MKK

text: mother

text: female

text: Generic sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21679

text: Homo sapiens

text: MKK

text: mother

text: female

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21732

text: Homo sapiens

text: MKK

characteristic: population

text: unrelated

text: male

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21735

text: Homo sapiens

text: MKK

text: female

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21737

text: Homo sapiens

text: MKK

text: unrelated

text: male

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21769

text: Homo sapiens

text: MKK

text: unrelated

text: female

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21770

text: Homo sapiens

text: MKK

text: unrelated

text: female

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21775

text: Homo sapiens

text: MKK

text: unrelated

text: female

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21782

text: Homo sapiens

text: MKK

text: unrelated

text: female

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21785

text: Homo sapiens

text: MKK

text: unrelated

text: female

text: Generic sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Human HapMap individual NA21786

text: Homo sapiens

text: MKK

text: unrelated

text: female

text: Generic sample from Homo sapiens


text: Stockholm University

text: live

text: Generic

text: Mouse brain from 19-day embryo

text: Mus musculus

text: Generic sample from Mus musculus


text: Stockholm University

text: live

text: Generic

text: Mouse brain from 2 day post natal animal

text: Mus musculus

text: Generic sample from Mus musculus


text: Stockholm University

text: live

text: Generic

text: Mouse brain from 21 day post natal animal

text: Mus musculus

text: Generic sample from Mus musculus


Ficedula hypoleuca

text: Uppsala University

text: live

text: Generic

text: We sequenced 2.5 plates of brain transcriptome data from Ficedula hypoleuca using 454 FLX-GS platform.

text: Ficedula hypoleuca

text: Generic sample from Ficedula hypoleuca


Parus caeruleus

text: Uppsala University

text: live

text: Generic

text: We sequenced 1 plate of brain transcriptome data from Parus caeruleus using 454 FLX-GS platform.

text: Cyanistes caeruleus

text: Generic sample from Cyanistes caeruleus


text: Cornell University

text: live

text: Generic

characteristic: inbred line

text: Zea mays

text: Maize leaf

text: leaf base

characteristic: tissue


text: Cornell University

text: live

text: Generic

text: Zea mays

text: Maize leaf

text: leaf tip


RaMps soil microbes

text: Kansas State University - Fungal Ecology Lab

text: live

text: Generic

text: These are fungal amplicons generated from samples collected in November, 2007, in order to supplement the bacterial and fungal samples collected for a previous 454-platform (GS20) in 2005 and 2006.

text: soil metagenome

text: Generic sample from Fungi


BUNA

text: Baylor College of Medicine

text: live

text: Generic

text: Burkholderia unamae MtI641T

text: Paraburkholderia unamae MTI-641

characteristic: strain

text: Generic sample from Burkholderia unamae MTI-641


text: Università degli Studi di Verona

characteristic: INSDC center name

text: live

text: Generic

text: Vitis vinifera cv. Corvina berries were collected at 5 weeks post-flowering, corresponding to the post fruit-set. Total soluble solids content was 4.3 *Brix.

text: Vitis vinifera

text: Generic sample from Vitis vinifera


text: Università degli Studi di Verona

text: live

characteristic: INSDC status

text: Generic

text: Vitis vinifera cv. Corvina berries collected 10 weeks post-flowering corresponding to veraison stage. Total soluble solids content was 11.3 *Brix.

text: Vitis vinifera

text: Generic sample from Vitis vinifera


text: Università degli Studi di Verona

text: live

text: Generic

characteristic: NCBI submission model

text: Vitis vinifera cv. Corvina berries were collected at 15 weeks post-flowering, corresponding to ripening stage. Total soluble solids content was 20 *Brix

text: Vitis vinifera

text: Generic sample from Vitis vinifera


ATCC

text: University of Florida

characteristic: INSDC first public

text: live

text: Generic

text: Vibrio vulnificus strain ATCC 33149

text: Vibrio vulnificus

text: Vibrio vulnificus strain ATCC 33149


text: University of Florida

text: live

text: Generic

characteristic: NCBI submission package

text: Vibrio vulnificus

text: Generic sample from Vibrio vulnificus


text: University of Florida

text: live

text: Generic

text: Vibrio vulnificus MO6-24/O

text: Vibrio vulnificus MO6-24/O

characteristic: title


HMP088-454 Sample

text: J. Craig Venter Institute

characteristic: INSDC last update

text: live

text: MIGS.ba

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: This strain was isolated from the human oral cavity.

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 6: Finished21.3x;208

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: human oral cavity

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Pseudoleptotrichia goodfellowii F0264

text: Leptotrichia goodfellowii F0264

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-12

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Leptotrichia goodfellowii F0264


CDIF

characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Clostridium difficile NAP07

characteristic: description

text: Clostridioides difficile NAP07

characteristic: organism

characteristic: strain

text: Generic sample from Clostridium difficile NAP07

characteristic: title


text: Baylor College of Medicine

text: live

text: Generic

text: Clostridium difficile NAP08

text: Clostridioides difficile NAP08

text: Generic sample from Clostridium difficile NAP08


FDIP

text: Baylor College of Medicine

text: live

text: Generic

text: Fremyella diplosiphon UTEX481

text: Tolypothrix sp. PCC 7601

text: Generic sample from Tolypothrix sp. PCC 7601 = UTEX LB 481


HCAN

text: Baylor College of Medicine

text: live

text: Generic

text: Helicobacter canadensis NCTC13241

text: Helicobacter canadensis MIT 98-5491

text: strain co-identity: MIT 98-5491 = NCTC 13241

text: MIT 98-5491

text: Generic sample from Helicobacter canadensis MIT 98-5491

text: type strain of Helicobacter canadensis

characteristic: type material


HPUL

text: Baylor College of Medicine

text: live

text: Generic

text: Helicobacter pullorum NCTC12824

text: Helicobacter pullorum NCTC 12824

text: Generic sample from Helicobacter pullorum NCTC 12824

text: type strain of Helicobacter pullorum


SPNE

text: Baylor College of Medicine

text: live

text: Generic

text: Streptococcus pneumoniae Gambia

text: Streptococcus pneumoniae ST 618

text: Gambia

text: Generic sample from Streptococcus pneumoniae ST 618


text: Sam Gu, Molecular Biology and Biochemistry, Rutgers University

text: live

text: Generic

text: IP input

characteristic: chip antibody

text: young adult

characteristic: developmental stage

text: Caenorhabditis elegans

text: synchronized young adult population of wild type strain N2

text: Total Nucleosome N2 seq


text: live

text: Generic

text: young adult

text: Caenorhabditis elegans

text: H3K4me2/3 N2 chipSeq


text: live

text: Generic

text: young adult

text: Caenorhabditis elegans

text: H3K9me3 N2 chipSeq


text: live

text: Generic

text: IP input

text: young adult

text: Caenorhabditis elegans

text: synchronized young adult population of mutant strain zim-2(tm574)

text: Total Nucleosome zim2 seq


text: live

text: Generic

text: young adult

text: Caenorhabditis elegans

text: H3K9me3 zim2 chipSeq


TPAR

text: Baylor College of Medicine

text: live

text: Generic

text: Treponema paraluiscuniculi

text: Treponema paraluiscuniculi Cuniculi A

text: Cuniculi A

text: Generic sample from Treponema paraluiscuniculi Cuniculi A


text: P.J. Green - B.C. Meyers, Plant and Soil Sciences Department, University of Delaware

text: live

text: Generic

text: Ana Dorantes-Acosta; Richard A. Jorgensen (University of Arizona)

characteristic: biomaterial provider

text: Petunia x hybrida

text: Cosuppressed flower

text: V26 transformed with one copy of the complete coding region of Chalcone synthase A (CHS-A) gene under the control of a 2

text: Small RNAs from Petunia cosuppressed flower


characteristic: External Id

text: live

text: Generic

text: Petunia x hybrida

text: WT-biological replicate

characteristic: replicate

text: WT flower

text: V26; Pre-anthesis petal tissue

text: Small RNAs from petunia WT flower


xenopus tropicalis RNA sample

text: BC Cancer Agency Michael Smith Genome Sciences Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: cDNA derived from a pool of 12 xenopus tropicalis tissues: neurula, head, brain, ovary, lung, intestine, gastrula, tailbud, oviduct, liver, testis, and tadpole

text: Xenopus tropicalis

text: Generic sample from Xenopus (Silurana) tropicalis


text: Molecular Biology, Radboud University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: 10-13 embryo

text: Xenopus tropicalis

text: whole embryo

text: RNASeq


text: Michael Hemann, Koch Institute for Integrative Cancer Research, MIT

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: retroviral plasmid library (MSCV-based retroviral vector) of 2250 shRNAs

characteristic: library

text: synthetic construct

text: pooled retroviral shRNA library

text: plasmid library, rep1


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Eu-myc Arf-/- lymphoma cells

characteristic: cell type

characteristic: host mouse strain

text: Mus musculus

text: transduced with shRNA library, collected immediately to serve as a reference sample

characteristic: protocol

text: lymphoma cells

text: cells, acutely infected, rep1


text: live

text: Generic

text: Eu-myc Arf-/- lymphoma cells

text: Mus musculus

characteristic: organism

text: transduced with shRNA library, maintained in culture

text: lymphoma cells

text: cells, in vitro, rep1

characteristic: title


text: live

text: Generic

text: Eu-myc Arf-/- lymphoma cells

text: Mus musculus

text: lymphoma cells

text: cells, in vitro, rep2


text: live

text: Generic

text: Eu-myc Arf-/- lymphoma cells

text: Mus musculus

text: lymphoma cells

text: cells, in vitro, rep3


text: live

text: Generic

text: Eu-myc Arf-/- lymphoma cells

text: Mus musculus

text: transduced with shRNA library, tail-vein injected into three syngeneic recipient mice, tumors harvested

text: lymphoma cells

text: cells, tumor, rep1


text: live

text: Generic

text: Eu-myc Arf-/- lymphoma cells

text: Mus musculus

text: lymphoma cells

text: cells, tumor, rep2


text: live

text: Generic

text: Eu-myc Arf-/- lymphoma cells

text: Mus musculus

text: lymphoma cells

text: cells, tumor, rep3


text: Sun Yat-sen University

text: live

text: Generic

text: Hydrothermal vent chimney 4143-1 from Mothra field of Juan de Fuca Ridge at a depth of 2267m

characteristic: description

text: hydrothermal vent metagenome

text: Generic sample from hydrothermal vent metagenome


characteristic: External Id

text: Molecular Biology, Radboud University

text: live

text: Generic

characteristic: antibody

text: 11-12 embryo

characteristic: developmental stage

text: Xenopus tropicalis

text: whole embryo


text: Molecular Biology, Radboud University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: RNAPII (Diagenode, AC-055-100)

text: 11-12 embryo

text: Xenopus tropicalis

text: whole embryo


Nematode Control Metagenetic Samples

text: University of New Hampshire

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Caenorhabditis elegans

text: Generic sample from Caenorhabditis elegans


text: Chris Burge Lab, Biology, MIT

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: cell l ine

text: Homo sapiens

text: 293T cells

text: hnRNP H-KD mRNA-Seq


text: Chris Burge Lab, Biology, MIT

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

text: 293T cells

text: Control-KD mRNA-Seq


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: cultivar

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: Generic sample from Phaseolus vulgaris


text: Genome Institute of Singapore

text: live

text: Generic

text: CD4+ T cells

characteristic: cell type

text: Homo sapiens

text: T cells

text: Methyl-Seq_human T cells


text: Gingeras, Cold Spring Harbor Labs

text: live

text: Generic

characteristic: biorep

text: 16-18 hr embryos

text: Drosophila melanogaster

characteristic: organism

text: embryo


ruby-throated hummingbird

text: Duke University

text: live

text: Generic

text: Brain cDNA from Archilochus colubris (Ruby-throated hummingbird, adult male), brain collected by Jarvis ED, cDNA prepared by Whitney O

characteristic: description

text: Archilochus colubris

characteristic: title


Anna's hummingbird

characteristic: External Id

text: Duke University

text: live

text: Generic

text: Brain cDNA from Calypte anna (Anna`s hummingbird, adult male), brain collected by Mello CV and Lovell PV, cDNA prepared by Whitney O

text: Calypte anna


budgerigar

text: Duke University

text: live

text: Generic

text: Brain cDNA from Melopsittacus undulatus (Budgerigar, adult male), brain collected by Jarvis ED, cDNA prepared by Whitney O.

text: Melopsittacus undulatus

text: Brain cDNA from Melopsittacus undulatus (Budgerigar parrot, adult male)


Ringneck dove

text: Duke University

text: live

text: Generic

text: Brain cDNA from Streptopelia roseogrisea var. domestica (Ring-necked dove, adult male), brain collected by Jarvis ED, cDNA prepared by Whitney O.

text: Streptopelia risoria


crocodiles

text: Duke University

text: live

text: Generic

text: Brain cDNA from Alligator mississippiensis (American alligator, juvenile male), brain collected by Soares D, Wada K, and Jarvis ED, cDNA prepared by Whitney O.

text: Alligator mississippiensis


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG00096

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

characteristic: relationship

text: male

characteristic: sex

text: Coriell HG00096


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00097

text: Homo sapiens

text: GBR

text: unrelated

text: female

text: Coriell HG00097


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

text: live

text: Generic

text: Human 1000 genomes individual HG00098

characteristic: description

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: male

text: Generic sample from Homo sapiens

characteristic: title


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG00099

text: Homo sapiens

text: GBR

text: unrelated

text: female

text: Coriell HG00099


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00100

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

characteristic: relationship

text: female

characteristic: sex

text: Coriell HG00100


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00101

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00101


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00102

characteristic: description

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: female

text: Coriell HG00102

characteristic: title


text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG00103

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00103


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00104

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

characteristic: relationship

text: female

characteristic: sex

text: Coriell HG00104


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00105

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00105


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00106

characteristic: description

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: female

text: Coriell HG00106


text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00107

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00107

characteristic: title


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00108

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

characteristic: relationship

text: male

text: Coriell HG00108


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00109

text: Homo sapiens

text: GBR

text: unrelated

text: male

characteristic: sex

text: Coriell HG00109


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00110

characteristic: description

text: Homo sapiens

text: GBR

text: unrelated

text: female

text: Coriell HG00110


text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00111

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: female

text: Coriell HG00111


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00112

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

text: male

text: Coriell HG00112

characteristic: title


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00113

text: Homo sapiens

text: GBR

text: unrelated

characteristic: relationship

text: male

text: Coriell HG00113


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00114

text: Homo sapiens

text: GBR

text: unrelated

text: male

characteristic: sex

text: Coriell HG00114


text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00115

characteristic: description

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00115


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00116

text: Homo sapiens

characteristic: organism

text: GBR

characteristic: population

text: unrelated

text: male

text: Coriell HG00116


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00117

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00117

characteristic: title


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00120

text: Homo sapiens

text: GBR

text: unrelated

characteristic: relationship

text: female

text: Coriell HG00120


text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00127

text: Homo sapiens

text: GBR

text: unrelated

text: female

characteristic: sex

text: Coriell HG00127


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00128

characteristic: description

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: female

text: Coriell HG00128


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00129

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

text: male

text: Coriell HG00129


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00130

text: Homo sapiens

text: GBR

text: unrelated

text: female

text: Coriell HG00130

characteristic: title


text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00131

text: Homo sapiens

text: GBR

text: unrelated

characteristic: relationship

text: male

text: Coriell HG00131


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00132

characteristic: description

text: Homo sapiens

text: GBR

text: unrelated

text: female

characteristic: sex

text: Coriell HG00132


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00133

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: female

text: Coriell HG00133


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00134

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

text: female

text: Coriell HG00134


text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00135

text: Homo sapiens

text: GBR

text: unrelated

text: female

text: Coriell HG00135

characteristic: title


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00136

characteristic: description

text: Homo sapiens

text: GBR

text: unrelated

characteristic: relationship

text: male

text: Coriell HG00136


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00137

text: Homo sapiens

text: GBR

text: unrelated

text: female

characteristic: sex

text: Coriell HG00137


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00138

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: male

text: Coriell HG00138


text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00139

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

text: male

text: Coriell HG00139


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00140

characteristic: description

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00140

characteristic: title


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00141

text: Homo sapiens

text: GBR

text: unrelated

characteristic: relationship

text: male

text: Coriell HG00141


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00142

text: Homo sapiens

text: GBR

text: unrelated

text: male

characteristic: sex

text: Coriell HG00142


text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00143

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: male

text: Coriell HG00143


characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Human 1000 genomes individual HG00144

characteristic: description

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

text: female

text: Generic sample from Homo sapiens


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: British From England and Scotland, UK

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00145

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00145

characteristic: title


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00146

text: Homo sapiens

text: GBR

text: unrelated

characteristic: relationship

text: female

characteristic: sex

text: Coriell HG00146


characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: Human 1000 genomes individual HG00147

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: female

text: Generic sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00148

characteristic: description

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00148


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: British From England and Scotland, UK

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00149

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

text: male

text: Coriell HG00149


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

text: Human 1000 genomes individual HG00150

text: Homo sapiens

text: GBR

text: unrelated

characteristic: relationship

text: female

text: Coriell HG00150

characteristic: title


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00151

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: male

characteristic: sex

text: Coriell HG00151


characteristic: External Id

text: NCBI

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00152

characteristic: description

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00152


characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Human 1000 genomes individual HG00153

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

text: female

text: Generic sample from Homo sapiens


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00155

text: Homo sapiens

text: GBR

text: unrelated

characteristic: relationship

text: male

text: Coriell HG00155


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00156

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: male

characteristic: sex

text: Coriell HG00156

characteristic: title


characteristic: External Id

text: NCBI

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00157

characteristic: description

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00157


characteristic: Coriell panel

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00158

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

text: female

text: Coriell HG00158


characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00160

text: Homo sapiens

text: GBR

text: unrelated

characteristic: relationship

text: male

text: Coriell HG00160


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00233

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

text: female

characteristic: sex

text: Coriell HG00233


characteristic: External Id

text: NCBI

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00234

text: Homo sapiens

text: GBR

text: unrelated

text: male

text: Coriell HG00234

characteristic: title


characteristic: Coriell panel

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00235

characteristic: description

text: Homo sapiens

text: GBR

text: unrelated

text: female

text: Coriell HG00235


characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: British From England and Scotland, UK

characteristic: SRA accession

text: EUR

text: European

characteristic: culture collection

text: Human 1000 genomes individual HG00238

text: Homo sapiens

text: GBR

characteristic: population

text: unrelated

text: female

text: Coriell HG00238


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: British From England and Scotland, UK

text: EUR

text: European

text: Human 1000 genomes individual HG00240

text: Homo sapiens

characteristic: organism

text: GBR

text: unrelated

characteristic: relationship

text: female

text: Coriell HG00240


characteristic: External Id

text: NCBI

text: live

text: Generic

text: British From England and Scotland, UK

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

text: Human 1000 genomes individual HG00255

text: Homo sapiens

text: GBR

text: unrelated

text: female

characteristic: sex

text: Coriell HG00255


characteristic: Coriell panel

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Han Chinese South, China

text: EAS

text: East Asian

text: Human 1000 genomes individual HG00442

characteristic: family id

text: Homo sapiens

text: CHS

text: father

text: male

text: Coriell HG00442

characteristic: title


characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: Han Chinese South, China

characteristic: SRA accession

text: EAS

text: East Asian

characteristic: culture collection

text: Human 1000 genomes individual HG00443

characteristic: description

text: Homo sapiens

text: CHS

characteristic: population

text: mother

text: female

text: Coriell HG00443


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Human 1000 genomes individual HG00444

text: Homo sapiens

characteristic: organism

text: SHC

text: child

characteristic: relationship

text: Generic sample from Homo sapiens


characteristic: Coriell panel

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Han Chinese South, China

characteristic: Population Description

text: EAS

characteristic: Super Population Code

text: East Asian

characteristic: Super Population Description

text: Human 1000 genomes individual HG00445

text: Homo sapiens

text: CHS

text: father

text: male

characteristic: sex

text: Coriell HG00445


characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Han Chinese South, China

characteristic: SRA accession

text: EAS

text: East Asian

characteristic: culture collection

text: Human 1000 genomes individual HG00446

characteristic: family id

text: Homo sapiens

text: CHS

text: mother

text: female

text: Coriell HG00446

characteristic: title


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Human 1000 genomes individual HG00447

characteristic: description

text: Homo sapiens

text: SHC

characteristic: population

text: child

text: Generic sample from Homo sapiens


characteristic: Coriell panel

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Han Chinese South, China

characteristic: Population Description

text: EAS

characteristic: Super Population Code

text: East Asian

text: Human 1000 genomes individual HG00448

text: Homo sapiens

characteristic: organism

text: CHS

text: father

characteristic: relationship

text: male

text: Coriell HG00448


characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Han Chinese South, China

characteristic: SRA accession

text: EAS

text: East Asian

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG00449

text: Homo sapiens

text: CHS

text: mother

text: female

characteristic: sex

text: Coriell HG00449


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Human 1000 genomes individual HG00450

characteristic: family id

text: Homo sapiens

text: SHC

text: child

text: Generic sample from Homo sapiens

characteristic: title


characteristic: Coriell panel

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Han Chinese South, China

characteristic: Population Description

text: EAS

characteristic: Super Population Code

text: East Asian

text: Human 1000 genomes individual HG00451

characteristic: description

text: Homo sapiens

text: CHS

characteristic: population

text: father

text: male

text: Coriell HG00451


characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Han Chinese South, China

characteristic: SRA accession

text: EAS

text: East Asian

characteristic: Super Population Description

text: Human 1000 genomes individual HG00452

text: Homo sapiens

characteristic: organism

text: CHS

text: mother

characteristic: relationship

text: female

text: Coriell HG00452


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Human 1000 genomes individual HG00453

text: Homo sapiens

text: SHC

text: child

text: Generic sample from Homo sapiens


characteristic: Coriell panel

text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Han Chinese South, China

text: EAS

text: East Asian

characteristic: culture collection

text: Human 1000 genomes individual HG00463

characteristic: family id

text: Homo sapiens

text: CHS

text: father

text: male

characteristic: sex

text: Coriell HG00463

characteristic: title


characteristic: DNA id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Han Chinese South, China

characteristic: Population Description

text: EAS

characteristic: Super Population Code

text: East Asian

text: Human 1000 genomes individual HG00464

characteristic: description

text: Homo sapiens

text: CHS

characteristic: population

text: mother

text: female

text: Coriell HG00464


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Human 1000 genomes individual HG00465

text: Homo sapiens

characteristic: organism

text: SHC

text: child

characteristic: relationship

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: batch

text: James Thompson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cells received from the James Thompson laboratory. Cells are from the H1 line.

characteristic: line

text: Embryonic Stem Cell

characteristic: lineage

text: mTeSER

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Between 25 and 45

characteristic: passage

text: male

text: Generic sample from Homo sapiens


ChIP sample

characteristic: External Id

text: Helicos BioSciences Corporation

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: H3K4me3, H3K36me3, H3K27me3 and CTCF ChIP samples along with control input whole cell extract were produced from Mouse ES Cells (V6.5; male; genotype 129SvJaexC57BL/6; passages 10-15)

characteristic: description

text: Mus musculus

text: Helicos Data for Mouse ChIP

characteristic: title


text: Centro de Biologia Molecular Severo Ochoa

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

characteristic: Total points

characteristic: collection date

text: freshwater virome

characteristic: common name

text: Viral fraction obtained by selective filtration from a water sample collected from the Antarctic Lake Limnopolar in Spring 2006

text: freshwater metagenome

characteristic: organism

text: Generic sample from freshwater metagenome

characteristic: total bases


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: Total spots

text: freshwater virome

text: Viral fraction obtained by selective filtration from a water sample collected from the Antarctic Lake Limnopolar in Summer.

text: freshwater metagenome


cichlid Amphilophus zaliosus cDNA

characteristic: External Id

text: Univ. Konstanz

text: live

text: Generic

text: Sequence reads from Roche 454 GS FLX sequencing of a normalized cDNA EST library. The RNA samples were based on pooled RNA of full sibs (1 day, 1 week, and 1 month old [heads only]) lab-reared fishes.

text: Amphilophus zaliosus

text: Generic sample from Amphilophus zaliosus


Validation Phase PCR

text: Scripps Translational Science Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Six samples sequenced for PCR validation: NA11832, NA11992, NA12006, NA18505, NA18517, NA18489

text: Homo sapiens

text: Generic sample from Homo sapiens


cichlid Amphilophus astorquii cDNA

text: Univ. Konstanz

text: live

text: Generic

characteristic: NCBI submission package

text: Amphilophus astorquii

text: Generic sample from Amphilophus astorquii


StreptoPhageMix

text: San Diego State University

text: live

text: Generic

text: Five Streptococcus phage lysates (required by Kent SeaTech). Tilapia Ponds Key Words:Fish; Tilapia

characteristic: description

text: 33.537594 N 116.097751 W

characteristic: lat lon

text: Streptococcus

text: Generic sample from Streptococcus


Yersinia pestis Sample

text: J. Craig Venter Institute

characteristic: INSDC center name

text: live

text: Generic

text: Genomic DNA from Y. pestis KIM D27 provided by Dr. Olaf Schneewind of the University of Chicago

text: Yersinia pestis KIM D27

text: KIM D27

characteristic: strain

text: Generic sample from Yersinia pestis KIM D27

characteristic: title


text: Xing Wang Deng, MCDB, Yale University

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: 14 day-old

characteristic: age

text: Zea mays

text: seedling shoots

text: B73 Strain

text: seedling shoots

characteristic: tissue type


text: Xing Wang Deng, MCDB, Yale University

text: live

text: Generic

text: 14 day-old

text: Zea mays

characteristic: organism

text: seedling roots

text: B73 Strain

text: seedling roots


text: Xing Wang Deng, MCDB, Yale University

characteristic: INSDC last update

text: live

text: Generic

text: 14 day-old

characteristic: antibody

text: Zea mays

text: seedling shoots

text: B73 Strain

text: seedling shoots


text: Xing Wang Deng, MCDB, Yale University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 14 day-old

text: Zea mays

text: seedling roots

text: B73 Strain

text: seedling roots


characteristic: External Id

text: Laboratory of Molecular Immunology, NHLBI, NIH

text: live

text: Generic

characteristic: antigen

text: Homo sapiens

text: CD4+ T cells

text: HS_CD4_Act_18h_ H2A.Z


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Homo sapiens

text: CD4+ T cells

text: HS_CD4_Act_18h_ H3K4me1


text: live

text: Generic

text: Homo sapiens

text: CD4+ T cells

text: HS_CD4_Act_18h_ H3K4me3


text: live

text: Generic

text: Homo sapiens

text: CD4+ T cells

text: HS_CD4_Act_18h_ H3K9me1


text: live

text: Generic

text: Up 07-448

text: Homo sapiens

text: CD4+ T cells

text: HS_CD4_Act_18h_ H3K27me1


text: live

text: Generic

text: Up 07-449

text: Homo sapiens

text: CD4+ T cells

text: HS_CD4_Act_18h_ H3K27me3


text: live

text: Generic

text: Homo sapiens

text: CD4+ T cells

text: HS_CD4_Act_18h_ H3K36me3


text: live

text: Generic

text: Homo sapiens

text: CD4+ T cells

text: HS_CD4_Act_18h_ H3K79me2


text: live

text: Generic

text: Homo sapiens

text: CD4+ T cells

text: HS_CD4_Act_18h_ H4K20me1


text: live

text: Generic

text: Pol II

text: Homo sapiens

text: CD4+ T cells

text: HS_CD4_Act_18h_ Pol II


text: Rajewsky, Systems Biology of Gene Regulatory Elements, Max-Delbrueck Centrum Berlin-Buch

text: live

text: Generic

text: Two to four cell embryo

characteristic: developmental stage

characteristic: meoh-fixed

text: Caenorhabditis elegans

characteristic: resorted

characteristic: sorted

text: Two to four cell embryo

text: Illumina sequencing of small RNAs from two-to-four cell C. elegans embryos


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: One cell embryo

text: Caenorhabditis elegans

text: One cell embryo

characteristic: strain

text: Illumina sequencing of small RNAs from one cell stage C. elegans embryos

characteristic: title


text: live

text: Generic

characteristic: SRA accession

text: Post-gastrulation embryo

text: Caenorhabditis elegans

characteristic: organism

text: Post-gastrulation embryo

text: Illumina sequencing of small RNAs from post-gastrulation C. elegans embryos


characteristic: INSDC last update

text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: Older embryos (fixed)

text: Illumina sequencing of small RNAs from older, fixed C. elegans embryos


characteristic: INSDC secondary accession

text: live

text: Generic

text: one-cell embryo

text: Caenorhabditis elegans

characteristic: purity

text: Living one-cell embryo

text: Illumina sequencing of small RNAs from living one cell C. elegans embryos


characteristic: External Id

text: live

characteristic: INSDC status

text: Generic

text: Mixed embryos

text: Caenorhabditis elegans

text: Mixed C. elegans embryos

text: Illumina sequencing of small RNAs from mixed C. elegans embryos


text: RNA Biology, Center for Integrated Protein Science Munich (CIPSM), Max Planck Institute of Biochemistry

text: live

text: Generic

characteristic: NCBI submission model

text: anti-Ago1 4B8

characteristic: antibody

text: Homo sapiens

text: HEK293 cells

text: endogenous small RNA associated to human Argonaute 1


text: live

text: Generic

characteristic: NCBI submission package

text: anti-Ago2 11A9

text: Homo sapiens

text: HEK293 cells

text: endogenous small RNA associated to human Argonaute 2


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Genome Center dna_id: 2698297110 type: cdna Corvus brachyrhynchos

characteristic: description

text: Corvus brachyrhynchos

text: Generic sample from Corvus brachyrhynchos


text: live

text: Generic

text: Gender : Sample Type : Description :

text: Dromaius novaehollandiae

text: Generic sample from Dromaius novaehollandiae


text: live

text: Generic

text: Gender : Sample Type : Description :

text: Manacus vitellinus

text: Generic sample from Manacus vitellinus


text: Yale University

text: live

text: Generic

text: Homo sapiens

text: Naked DNA

text: Naked DNA from HeLa S3 cells


text: Yale University

text: live

text: Generic

text: Homo sapiens

text: MNase-digested DNA

text: MNase-digested DNA from HeLa S3 cells


text: Yale University

text: live

text: Generic

text: Homo sapiens

text: Sono-Seq DNA (350-800 bp)

text: Large fragment Sono-Seq DNA (350-800 bp)


text: Yale University

text: live

text: Generic

text: Homo sapiens

text: Normal Mouse IgG ChIP

text: Normal Mouse IgG ChIP


text: RNA Informatics Team, Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology

text: live

text: Generic

text: ovarian somatic cell (OSC)

characteristic: cell type

text: immunoprecipitation

characteristic: method

text: Drosophila melanogaster

text: ovarian somatic cell (OSC)

text: Piwi protein

characteristic: target

text: FLX sequencing of Piwi-associated small RNAs extracted from Drosophila ovarian somatic cells (OSC)


text: Lab of Genetics, National Institute on Aging, NIH

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Flag M2

text: Cdx2-inducible ES cells, ES[MC1R(20):tetCdx2(6)]

text: Mus musculus

characteristic: passages

text: Embyonic stem cells


text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: Nasopharyngeal Carcinoma

text: undifferentiated NPC

characteristic: tissue

text: NPC sample from patient1 (female)

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: healthy nasopharyngeal tissue

text: clinically negative of NPC

text: healthy control tissue from patient1 (female)


characteristic: External Id

text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: Nasopharyngeal Carcinoma

text: undifferentiated NPC

text: NPC sample from patient2 (male)


text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: healthy nasopharyngeal tissue

text: clinically negative of NPC

text: healthy control tissue from patient2 (male)


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

characteristic: batch

text: ATCC

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: IMR90 cells

text: IMR90 Cell Line.

text: Fetal lung fibroblast

characteristic: differentiation stage

characteristic: line

text: Eagle's Minimum Essential Medium, Catalog No. 30-2003.

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: female

characteristic: sex

text: Generic sample from Homo sapiens


Soil bacterial diversity

text: University of Georgia

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: soil metagenome

text: Generic sample from Bacteria

characteristic: title


characteristic: External Id

text: NIH Intramural Sequencing Center

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Drosophila melanogaster

characteristic: organism

text: Generic sample from Drosophila melanogaster


text: Joint Genome Institute, U.S. Department of Energy

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Dehalococcoides sp. GT

characteristic: description

text: Dehalococcoides mccartyi GT

text: GT

characteristic: strain

text: Generic sample from Dehalococcoides sp. GT


text: Arizona State University

text: live

text: Generic

text: post-gastric-bypass, V6 16S rRNA, individual 3

text: human gut metagenome

text: Generic sample from human gut metagenome


text: University of Birmingham

text: live

text: Generic

text: Escherichia coli

text: Generic sample from Escherichia coli


text: Stanford University

text: live

text: Generic

text: Cell free plasma DNA

text: 47XX +21

characteristic: fetal karyotype

characteristic: gestational age

text: Homo sapiens

text: Sample from Homo sapiens


text: Xishuangbanna Tropical Botanical Garden

text: live

text: Generic

text: Indonesia: Riau, Sumatra; Diamond Raya Timber Concession area

characteristic: country

text: Population genomics of an endangered tropical timber species: Gonystylus bancanus

text: Gonystylus bancanus

characteristic: specimen voucher

text: leaf

characteristic: tissue

text: Generic sample from Gonystylus bancanus


S06 THP-1 PMA

text: DNA Data Bank of Japan

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: tag_length:25-40bp,target_rna_length:10-26bp

characteristic: THP-1 was stimulated by PMA and harvested after 0h, 2h, 4h, 12h, 24h

text: The THP-1 cell line was sub-cloned and one clone (#5) was selected for ability to differentiate relatively homogeneously in response to PMA. THP-1.5 was used for all subsequent experiments. THP-1.5 cells were cultured in RPMI, 10% FBS, Penicillin/Streptomycin, 10mM HEPES, 1mM Sodium Pyruvate, 50uM 2-Mercaptoethanol, and treated with 30ng/ml PMA (Sigma) to differentiate them into macrophage-like cells. PMA-differentiated THP-1.5 were stimulated with 10ng/ml LPS (Salmonella Minnesota, chromatographically purified, Sigma) over a time-course of 24h, in presence of PMA. Total cell lysates were harvested in TRIzol reagent. Undifferentiated and unstimulated, PMA-differentiated cells were harvested in TRIzol reagent at the beginning of the LPS time-course. Total RNA was purified from TRIzol lysates according to manufacturer's instructions.

text: Homo sapiens

text: Generic sample from Homo sapiens


S07 THP-1 PMA 96h LPS

characteristic: External Id

text: DNA Data Bank of Japan

text: live

text: Generic

characteristic: SRA accession

characteristic: THP-1 was stimulated by PMA, stimulated by LPS after 96h and harvested after 0h, 2h, 4h, 12h, 24h

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


S08 THP-1 PMA 24h

text: DNA Data Bank of Japan

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: THP-1 was stimulated by PMA and harvested after 24h, 48h, 72h, 96h replicate 1, 96h replicate 2

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


mice

text: Center for Genomic Regulation

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Heinz Himmelbauer (Center for Genomic Regulation)

characteristic: Submitter

text: adult mouse brain, C57BL/6J male

characteristic: description

text: Mus musculus

text: Generic sample from Mus musculus


text: Dept. of Biotechnology Yonsei Univ.

text: live

text: Generic

text: Soil samples were collected from volcanic areas of Indonesia. These samples were suspended with sterilized tap water, and then the suspensions were cultivated for 3days on gelrite plates containing the isolation medium at 60℃ . Colonies on the plates were picked for isolation

text: Thermobacillus

text: Generic sample from Thermobacillus


text: Arizona State University

text: live

text: Generic

text: normal weight, V6 16S rRNA, individual 1

text: human gut metagenome


text: TU Dortmund

text: live

text: Generic

text: Serial cryosections where obtained from the tumor. The first and last cryosection of each series was H&E stained and used to verify tumor cell content. Cryosections not used for histologic analysis were transferred to TRIazol buffer (QIAGEN, Hilden, Germany) and total RNA was extracted using the miRnEASY kit (Qiagen) according to the manufacturer’s recommendations.

text: Homo sapiens

text: Generic sample from Homo sapiens


text: University of Birmingham - Centre for Systems Biology

text: live

text: Generic

text: This is an isolate of Acinetobacter baumannii from 2008. It belongs to the European clone I lineage. It was isolated from a sputum sample from a patient in Birmingham, UK.

text: Acinetobacter baumannii

text: Generic sample from Acinetobacter baumannii


text: Arizona State University

text: live

text: Generic

text: normal weight, V6 16S rRNA, individual 2

text: human gut metagenome


text: Arizona State University

text: live

text: Generic

text: normal weight, V6 16S rRNA, individual 3

text: human gut metagenome


text: Arizona State University

text: live

text: Generic

text: obese, V6 16S rRNA, individual 2

text: human gut metagenome


text: Arizona State University

text: live

text: Generic

text: obese, V6 16S rRNA, individual 1

text: human gut metagenome


text: Arizona State University

text: live

text: Generic

text: obese, V6 16S rRNA, individual 3

text: human gut metagenome


text: Arizona State University

text: live

text: Generic

text: post-gastric-bypass, V6 16S rRNA, individual 1

text: human gut metagenome


text: Arizona State University

text: live

text: Generic

text: post-gastric-bypass, V6 16S rRNA, individual 2

text: human gut metagenome


text: UMass Medical School

text: live

text: Generic

text: Heads were dissected by vigorous shaking in liquid nitrogen in a metal sieve, as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)). Total RNA was extracted using the mirVana kit (Ambion), then short (18-29 nt) RNAs were gel-purified. 2S rRNA was depleted as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)). When applicable: small RNA preparations were oxidized with periodate in the presence of boric acid as described in Horwich et al. (2007) Curr. Biol. 17(14):1265-1272, except the final (alkaline) step was omitted. CyO-balanced hen1^f00810 mutant strain (described in Horwich et al., 2007, Curr. Biol. 17: 1265)

text: hen1 heterozygous

characteristic: genotype

text: Drosophila melanogaster

text: heads

characteristic: tissue

text: Drosophila melanogaster heads


text: UMass Medical School

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Heads were dissected by vigorous shaking in liquid nitrogen in a metal sieve, as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)). Total RNA was extracted using the mirVana kit (Ambion), then short (18-29 nt) RNAs were gel-purified. 2S rRNA was depleted as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)). When applicable: small RNA preparations were oxidized with periodate in the presence of boric acid as described in Horwich et al. (2007) Curr. Biol. 17(14):1265-1272, except the final (alkaline) step was omitted. hen1^f00810 mutant strain (described in Horwich et al., 2007, Curr. Biol. 17: 1265)

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


characteristic: External Id

text: Bioinformatics Group, CSIRO Plant Industry

text: live

text: Generic

text: 2.5 weeks old

characteristic: age

characteristic: ecotype

text: Arabidopsis thaliana

text: whole root tissue

text: control

characteristic: stress


characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: 2.5 weeks old

text: Arabidopsis thaliana

text: whole root tissue

text: low oxygen

text: root_low oxygen_1

characteristic: title


text: University of Birmingham

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Acinetobacter baumannii


text: live

text: Generic

characteristic: NCBI submission model

text: This is an isolate of Acinetobacter baumannii from 2008. It belongs to the European clone I lineage. It was isolated from a wound sample from a patient in Birmingham, UK.

text: Acinetobacter baumannii

characteristic: organism


POOL

text: live

text: Generic

characteristic: NCBI submission package

text: This is a pooled sample of 4 Acinetobacter baumannii isolates from 2008. Each belong to the European clone I lineage. The isolates are named M2, M3, M4 and C1-2a. The isolates originated from Birmingham, UK.

text: Acinetobacter baumannii


Mice 2

text: Center for Genomic Regulation

text: live

text: Generic

text: Heinz Himmelbauer (Centre for Genomic Regulation)

characteristic: Submitter

text: adult mouse brain, C57BL/6J male

characteristic: description

text: Mus musculus

text: Generic sample from Mus musculus


Patski RNA-seq

text: University of Washington

text: live

text: Generic

text: Mus spretus

text: Generic sample from Mus spretus


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Taeniopygia guttata

text: Generic sample from Taeniopygia guttata


Simi White Positive

text: Stanford University School of Medicine

text: live

text: Generic

text: Xylose positive segregants of Simi White S. cerevisiae (from Lallemand) were crossed once to S288c and the resulting diploids were then sporulated. F2 segregants were scored for xylose utilization in a TECAN plate reader. 1.5mL of overnight YPD culture of each segregant grown was spun down, resuspended, and frozen in 300μL of sorbitol solution (0.9M sorbitol, 0.1M Tris pH 8, 0.1M EDTA). Samples were pooled by phenotype at this stage and genomic DNA was extracted as described (Treco, D.A., Preparation of Yeast DNA. Curr. Protoc. Mol. Biol. Vol. 5:13.11. 1989). The pool contained 39 positives segregants. 5μg of genomic DNA were prepared for sequencing using the Illumina Genomic DNA Sample Kit. Flow cells were prepared using the Illumina Standard Cluster Generation Kit v2, and samples were sequenced on the Illumina Genome Analyzer II. GAII data were analyzed with the Illumina 1.3.2 pipeline.

text: Saccharomyces cerevisiae

text: Generic sample from Saccharomyces cerevisiae


Simi White Negative

text: Stanford University School of Medicine

text: live

text: Generic

text: Xylose negative segregants of Simi White S. cerevisiae (from Lallemand) were crossed once to S288c and the resulting diploids were then sporulated. F2 segregants were scored for xylose utilization in a TECAN plate reader. 1.5mL of overnight YPD culture of each segregant grown was spun down, resuspended, and frozen in 300μL of sorbitol solution (0.9M sorbitol, 0.1M Tris pH 8, 0.1M EDTA). Samples were pooled by phenotype at this stage and genomic DNA was extracted as described (Treco, D.A., Preparation of Yeast DNA. Curr. Protoc. Mol. Biol. Vol. 5:13.11. 1989). The pool contained 39 negative segregants. 5μg of genomic DNA were prepared for sequencing using the Illumina Genomic DNA Sample Kit. Flow cells were prepared using the Illumina Standard Cluster Generation Kit v2, and samples were sequenced on the Illumina Genome Analyzer II. GAII data were analyzed with the Illumina 1.3.2 pipeline.

text: Saccharomyces cerevisiae


Lalvin AC Positive

text: Stanford University School of Medicine

text: live

text: Generic

text: Xylose positive segregants of Lalvin AC S. cerevisiae were crossed once to S288c and the resulting diploids were then sporulated. F2 segregants were scored for xylose utilization in a TECAN plate reader. 1.5mL of overnight YPD culture of each segregant grown was spun down, resuspended, and frozen in 300μL of sorbitol solution (0.9M sorbitol, 0.1M Tris pH 8, 0.1M EDTA). Samples were pooled by phenotype at this stage and genomic DNA was extracted as described (Treco, D.A., Preparation of Yeast DNA. Curr. Protoc. Mol. Biol. Vol. 5:13.11. 1989). The pool contained 19 positive segregants. 5μg of genomic DNA were prepared for sequencing using the Illumina Genomic DNA Sample Kit. Flow cells were prepared using the Illumina Standard Cluster Generation Kit v2, and samples were sequenced on the Illumina Genome Analyzer II. GAII data were analyzed with the Illumina 1.3.2 pipeline.

text: Saccharomyces cerevisiae


Lalvin AC Negative

text: Stanford University School of Medicine

text: live

text: Generic

text: Xylose negative segregants of Lalvin AC S. cerevisiae were crossed once to S288c and the resulting diploids were then sporulated. F2 segregants were scored for xylose utilization in a TECAN plate reader. 1.5mL of overnight YPD culture of each segregant grown was spun down, resuspended, and frozen in 300μL of sorbitol solution (0.9M sorbitol, 0.1M Tris pH 8, 0.1M EDTA). Samples were pooled by phenotype at this stage and genomic DNA was extracted as described (Treco, D.A., Preparation of Yeast DNA. Curr. Protoc. Mol. Biol. Vol. 5:13.11. 1989). The pool contained 16 negative segregants. 5μg of genomic DNA were prepared for sequencing using the Illumina Genomic DNA Sample Kit. Flow cells were prepared using the Illumina Standard Cluster Generation Kit v2, and samples were sequenced on the Illumina Genome Analyzer II. GAII data were analyzed with the Illumina 1.3.2 pipeline.

text: Saccharomyces cerevisiae


SIHA Activ-Hefe 4 Positive

text: Stanford University School of Medicine

text: live

text: Generic

text: Xylose positive segregants of SIHA Activ-Hefe 4 S. cerevisiae were crossed once to S288c and the resulting diploids were then sporulated. F2 segregants were scored for xylose utilization in a TECAN plate reader. 1.5mL of overnight YPD culture of each segregant grown was spun down, resuspended, and frozen in 300μL of sorbitol solution (0.9M sorbitol, 0.1M Tris pH 8, 0.1M EDTA). Samples were pooled by phenotype at this stage and genomic DNA was extracted as described (Treco, D.A., Preparation of Yeast DNA. Curr. Protoc. Mol. Biol. Vol. 5:13.11. 1989). The pool contained 16 positive segregants. 5μg of genomic DNA were prepared for sequencing using the Illumina Genomic DNA Sample Kit. Flow cells were prepared using the Illumina Standard Cluster Generation Kit v2, and samples were sequenced on the Illumina Genome Analyzer II. GAII data were analyzed with the Illumina 1.3.2 pipeline.

text: Saccharomyces cerevisiae


SIHA Activ-Hefe 4 Negative

text: Stanford University School of Medicine

text: live

text: Generic

text: Xylose negative segregants of SIHA Activ-Hefe 4 S. cerevisiae were crossed once to S288c and the resulting diploids were then sporulated. F2 segregants were scored for xylose utilization in a TECAN plate reader. 1.5mL of overnight YPD culture of each segregant grown was spun down, resuspended, and frozen in 300μL of sorbitol solution (0.9M sorbitol, 0.1M Tris pH 8, 0.1M EDTA). Samples were pooled by phenotype at this stage and genomic DNA was extracted as described (Treco, D.A., Preparation of Yeast DNA. Curr. Protoc. Mol. Biol. Vol. 5:13.11. 1989). The pool contained 16 negative segregants. 5μg of genomic DNA were prepared for sequencing using the Illumina Genomic DNA Sample Kit. Flow cells were prepared using the Illumina Standard Cluster Generation Kit v2, and samples were sequenced on the Illumina Genome Analyzer II. GAII data were analyzed with the Illumina 1.3.2 pipeline.

text: Saccharomyces cerevisiae


text: University of Washington, Department of Genome Sciences -Stamatoyannopoulos Lab

text: live

text: Generic

text: Human Embryonic Stem Cell (hESC) BG02, BresaGen, Inc. hESBGN.02

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human lymphoblastoid cell line derived from peripheral blood (male). Obtained from the laboratory of Wendy Raskind, Division of Medical Genetics, Department of Washington, Seattle, WA 98195

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: chronic myeloid leukemia ATCC CCL-243

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: lymphoblastoid cell line Coriell GM06990

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human lymphoblastoid cell line derived from a full mutation fragile X male. Obtained from the laboratory of Sharon Wenger, Department of Pathology, West Virginia University, P.O. Box 9203, Morgantown, WV 26506.

text: Homo sapiens

text: Generic sample from Homo sapiens


BJ

text: live

text: Generic

text: skin fibroblast ATCC CRL-2522

text: Homo sapiens

text: Generic sample from Homo sapiens


S129 mouse ES cell

text: Beijing Institute of Genomics Chinese Acad of Sci - Key Lab

text: live

text: Generic

text: Mus musculus

text: Generic sample from Mus musculus


text: Xishuangbanna Tropical Botanical Garden

text: live

text: Generic

text: Malaysia: Riau, Terengganu; Belara Forest

characteristic: country

text: Population genomics of an endangered tropical timber species: Gonystylus bancanus

text: Gonystylus bancanus

characteristic: specimen voucher

text: bark

characteristic: tissue

text: Generic sample from Gonystylus bancanus


characteristic: External Id

text: Xishuangbanna Tropical Botanical Garden

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Malaysia: Pahang, Pekan Forest Reserve

text: Population genomics of an endangered tropical timber species: Gonystylus bancanus collection #: NadiaA26: bark collected in Air Hitam Utara Forest Reserve, Johor, Malaysia

text: Gonystylus bancanus

text: bark

text: Generic sample from Gonystylus bancanus


text: Xishuangbanna Tropical Botanical Garden

text: live

text: Generic

text: Malaysia: Johor, Air Hitam Utara Forest Reserve

text: Gonystylus bancanus

text: bark

text: Generic sample from Gonystylus bancanus


text: University of Arizona

text: live

text: Generic

text: Coccidioides posadasii str. Silveira

text: Silveira

characteristic: strain

text: Generic sample from Coccidioides posadasii str. Silveira


text: University of Arizona

characteristic: INSDC last update

text: live

text: Generic

text: Coccidioides immitis

text: Generic sample from Coccidioides immitis


flounder

text: Chinese Academy of Fishery Science

text: live

text: Generic

characteristic: SRA accession

text: Paralichthys olivaceus; Brain, muscle and liver tissue extracted from 2 flounder

text: Paralichthys olivaceus

text: Generic sample from Paralichthys olivaceus


text: TU Dortmund

text: live

text: Generic

text: Serial cryosections where obtained from the tumor. The first and last cryosection of each series was H&E stained and used to verify tumor cell content. Cryosections not used for histologic analysis were transferred to TRIazol buffer (QIAGEN, Hilden, Germany) and total RNA was extracted using the miRnEASY kit (Qiagen) according to the manufacturer’s recommendations.

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


name: Nucleosomes binding to Bdf1, Rap1, Srm1, Rpo21, and Vps72, respectively

text: Pennsylvania State University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Two barcodes are used to sequence each factor-bound nucleosomes. You need to use the barcode information to split tags. The raw sequence file is 0176_20081009_2_PUGH_F3.csfasta.tar with MD5 check sum 8da7a64eba58b8a03a49df318567b685. The quality file is 0176_20081009_2_PUGH_F3_QV.qual with MD5 check sum a4161e2fbb4e9c0f6320505354007f27. Barcodes of each factor: Bdf1: ACCC, CGTA; Rap1: AGGT, CTGC; Srm1: AAAA, CCAT; Rpo21: GATC, ATTG; Vps72: CACG, GCGA.

text: Saccharomyces cerevisiae

text: Generic sample from Saccharomyces cerevisiae


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

characteristic: INSDC status

text: Generic

text: Community (genomic) DNA was amplified from each of 8 sediment samples collected along the study transect. Samples were collected (0-10 cm) at 20 m intervals along a 140 m transect that originated in a vegetated upland area (T3-0), extended across exposed lakebed sediments (T3-65, T3-130, T3-195, T3-260, and T3-325), and continued toward the water's edge (T3-390 and T3-455).

text: uncultured bacterium

text: Generic sample from uncultured bacterium


Reb1-bound nucleosomes

text: Pennsylvania State University

text: live

text: Generic

characteristic: NCBI submission model

text: Two barcodes (AGGT and CTGC) are used to sequence Reb1-bound nucleosomes. You need to use these two barcodes to split tags. The raw sequence file is 199_20081016_1_T11_010_F3.csfasta.tar with MD5 check sum 49cc660787bb22a79902278da610ad23. The quality file is 199_20081016_1_T11_010_F3_QV.qual with MD5 check sum 1bf4ec74249e7747f0548acf6816367d.

text: Saccharomyces cerevisiae


HCT

text: Cleveland Clinic Foundation

text: live

text: Generic

text: MBD Isolated Genome Sequencing for HCT116 Colorectal Cancer Cell Line

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


DICER

text: Cleveland Clinic Foundation

text: live

text: Generic

characteristic: NCBI submission package

text: MBD Isolated Genome Sequencing for DICER knockout derived from HCT116 Colorectal Cancer Cell Line

text: Homo sapiens

text: Generic sample from Homo sapiens


DKO

text: Cleveland Clinic Foundation

text: live

text: Generic

text: MBD Isolated Genome Sequencing for DKO[Double Knockout DNMT1, DNMT3b] derived from HCT116

text: Homo sapiens

text: Generic sample from Homo sapiens


text: MPIMG

text: live

text: Generic

text: Homo sapiens

text: Generic sample from Homo sapiens


Sus scrofa

text: UNIVERSITY OF AARHUS

text: live

text: Generic

text: Apparently healthy Duroc male

text: Sus scrofa

text: Generic sample from Sus scrofa


text: Instituto de Biologia Molecular y Celular de Plantas

text: live

text: Generic

text: Complex mixture of sRNAs recovered from leaves and phloem of healthy and HSVd-infected Cucumis sativus plants

text: Cucumis sativus

text: ATCGTAGGCCACTGATA

text: ATCGTAGGCACCTGATA

text: ATCGTAGACGCCTGATA

text: ATCGTAGCGCACTGATA

text: ATCGTAGCGACCTGATA

text: ATCGTAGGCGTCTGATA

text: Generic sample from Cucumis sativus


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Klebsiella variicola At-22

text: Klebsiella variicola At-22

text: Generic sample from Klebsiella variicola At-22


text: Genome Institute of Singapore

text: live

text: Generic

text: mouse bone marrow-derived macrophages

characteristic: cell type

characteristic: chip antibody

text: Mus musculus

text: mouse bone marrow-derived macrophages

text: LPS+IFNγ treated for 2hrs

characteristic: treatment


text: Genome Institute of Singapore

text: live

text: Generic

text: mouse bone marrow-derived macrophages

text: Mus musculus

text: mouse bone marrow-derived macrophages

text: untreated


text: Genome Institute of Singapore

text: live

text: Generic

text: mouse bone marrow-derived macrophages

text: Mus musculus

text: mouse bone marrow-derived macrophages

text: LPS+IFNγ treated for 4 hrs


text: Genome Institute of Singapore

text: live

text: Generic

text: mouse bone marrow-derived macrophages

text: RNA-polymerase II

text: Mus musculus

text: mouse bone marrow-derived macrophages

text: untreated


text: Genome Institute of Singapore

text: live

text: Generic

text: mouse bone marrow-derived macrophages

text: RNA-polymerase II

text: Mus musculus

text: mouse bone marrow-derived macrophages

text: LPS+IFNγ treated for 2 hrs


text: Genome Institute of Singapore

text: live

text: Generic

text: mouse bone marrow-derived macrophages

text: RNA-polymerase II

text: Mus musculus

text: mouse bone marrow-derived macrophages

text: LPS+IFNγ treated for 4 hrs


text: Bartel, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: Naumovozyma castellii

text: WT

characteristic: rnai deletion

text: log-phase liquid culture, WT


text: live

text: Generic

text: Naumovozyma castellii

text: log-phase liquid culture, ∆ago1


text: live

text: Generic

text: Naumovozyma castellii

text: log-phase liquid culture, ∆dcr1


text: live

text: Generic

text: Naumovozyma castellii

text: log-phase liquid culture, WT

text: smallRNA-S.castellii-WT


text: live

text: Generic

text: Naumovozyma castellii

text: log-phase liquid culture, Ago1IP


text: live

text: Generic

text: Naumovozyma castellii

text: log-phase liquid culture, input

text: smallRNA-S.castellii-Input


text: live

text: Generic

text: Naumovozyma castellii

text: log-phase liquid culture, ∆ago1


text: live

text: Generic

text: Naumovozyma castellii

text: log-phase liquid culture, ∆dcr1


text: live

text: Generic

text: Vanderwaltozyma polyspora

text: log-phase liquid culture, WT

text: KpolWT

text: smallRNA-K.polysporus-WT


text: live

text: Generic

text: Candida albicans

text: log-phase liquid culture, WT

text: smallRNA-C.albicans-WT


text: live

text: Generic

text: Saccharomyces cerevisiae

text: log-phase liquid culture, WT

text: smallRNA-S.cerevisiae-WT


text: live

text: Generic

text: Saccharomyces bayanus

text: log-phase liquid culture, WT

text: smallRNA-S.bayanus-WT


text: Gingeras, Cold Spring Harbor Labs

text: live

text: Generic

characteristic: biorep

text: Drosophila melanogaster

characteristic: techrep

text: BG3 small RNAs BioRep-1 TechRep-1


characteristic: External Id

text: Gingeras, Cold Spring Harbor Labs

characteristic: INSDC center name

text: live

text: Generic

text: Drosophila melanogaster

text: BG3 small RNAs BioRep-2 TechRep-1


text: Gingeras, Cold Spring Harbor Labs

characteristic: INSDC first public

text: live

text: Generic

text: Drosophila melanogaster

text: BG3 small RNAs BioRep-2 TechRep-2


text: Gingeras, Cold Spring Harbor Labs

characteristic: INSDC last update

text: live

text: Generic

characteristic: cell line

text: Drosophila melanogaster

text: Cl.8 small RNAs BioRep-1 TechRep-1


text: Gingeras, Cold Spring Harbor Labs

text: live

text: Generic

characteristic: SRA accession

text: Drosophila melanogaster

text: Cl.8 small RNAs BioRep-1 TechRep-2

characteristic: title


text: Gingeras, Cold Spring Harbor Labs

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Drosophila melanogaster

text: Cl.8 small RNAs BioRep-1 TechRep-3