text: Baylor College of Medicine

text: live

text: MIGS.ba

characteristic: NCBI submission package

text: Newbler v. 2.0-01162009

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Streptococcus parasanguinis ATCC 15912

characteristic: estimated size

characteristic: feature

text: Level 6: Finished34x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Streptococcus parasanguinis ATCC 15912

text: Streptococcus parasanguinis ATCC 15912

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: ATCC 15912, DSM 6778

text: Homo sapiens

characteristic: specific host

text: ATCC 15912

text: MIGS Cultured Bacterial/Archaeal sample from Streptococcus parasanguinis ATCC 15912


status: PUBLIC

characteristic: External Id

text: HipHop, University of Toronto

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Saccharomyces bayanus

characteristic: organism

text: Saccharomyces bayanus

tag: attribute

text: NRRL Y-11845

characteristic: strain

characteristic: title


name: Spongospora subterranea infected Solanum tuberosum cells

text: Plant & Food Research

text: live

text: Generic

text: Spongospora subterranea 166267 infected Solanum tuberosum 4113

characteristic: description

text: Spongospora subterranea f. sp. subterranea


name: Plasmodiophora brassicae infected Brassica rapa cells

text: Plant & Food Research

text: live

text: Generic

text: Plasmodiophora brassicae 37360, Brassica rapa subsp. pekinensis 51351

text: Plasmodiophora brassicae


text: MRC Laboratory of Molecular Biology

text: live

text: Generic

text: Whole genome sequence data from LSJ1, a sibling strain of the N2 reference C. elegans strain.

text: Caenorhabditis elegans

text: LSJ1 genome sequence


text: MRC Laboratory of Molecular Biology

text: live

text: Generic

text: Whole genome sequence of the ED3054 wild C. elegans isolate, which was collected from Limuri, Kenya.

text: Caenorhabditis elegans

text: ED3054 genome sequence


text: MRC Laboratory of Molecular Biology

text: live

text: Generic

text: Whole genome sequence of the CB4856 wild C. elegans isolate, which was collected in Hawaii, USA.

text: Caenorhabditis elegans

text: CB4856 genome sequence


text: KRIBB

text: live

text: Generic

text: Homo sapiens

text: Lineage-Specific Gene Expression and DNA Methylation During in vitro Hepatogenesis


text: Insect Sciences, Zhejiang University

text: live

text: Generic

text: with TYLCCNV

characteristic: agent

text: B biotype

characteristic: biotype

text: maintained on cotton

characteristic: growth condition

text: Bemisia tabaci

text: Whitefly female adult

text: BCV


text: Insect Sciences, Zhejiang University

text: live

text: Generic

text: no TYLCCNV

text: B biotype

text: maintained on cotton

text: Bemisia tabaci

text: Whitefly female adult

text: BC


text: Institute of botany

text: live

text: Generic

text: originating/derived from immature seed

characteristic: callus

text: five-years old

characteristic: leaves

text: Cunninghamia lanceolata

text: fully mature; store at 4ºC

characteristic: seed

text: seeds, calluses, two-week-old young shoots, leaves and stems

text: age: five-year old

characteristic: stem

text: Cunninghamia lanceolata: small RNAs from five tissues

text: two-weeks old

characteristic: young shoot


characteristic: External Id

text: Michigan State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: N-repletion

characteristic: condition

text: cw15, nit2, mt+

characteristic: genotype

text: Chlamydomonas reinhardtii

text: Chlamydomonas culture, N-replete


text: Michigan State University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: N-deprivation

text: cw15, nit2, mt+

text: Chlamydomonas reinhardtii

characteristic: organism

text: Chlamydomonas culture, N-deprived

characteristic: strain

characteristic: title


MA12 Progenitor

text: Oregon State University

text: live

text: Generic

text: MA12 Progenitor. This is the strain from which adaptive recovery was measured

characteristic: description

text: Caenorhabditis elegans

text: MA12 Progenitor


text: Oregon State University

text: live

text: Generic

text: Recovery line A. This strain recovered from the low fitness of it's progenitor MA12.

text: Caenorhabditis elegans


text: Oregon State University

text: live

text: Generic

text: Recovery line B. This strain recovered from the low fitness of it's progenitor MA12.

text: Caenorhabditis elegans


text: Oregon State University

text: live

text: Generic

text: Recovery Line C. This strain recovered from the low fitness of it's progenitor MA12.

text: Caenorhabditis elegans


text: Oregon State University

text: live

text: Generic

text: This is C.elegans strain N2 that is the progenitor of the low-fitness MA12 strain.

text: Caenorhabditis elegans


text: UIUC

text: live

text: Generic

text: The bulk soil collected from top 10 cm from the field before planting of bioenergy crops.

text: uncultured soil bacterium

text: Changes in N-transforming archaea and bacteria during the establishment of bioenergy crops


text: UIUC

text: live

text: Generic

text: The bulk soil collected from top 10 cm from the field 1st season after planting of miscanthus.

text: uncultured soil bacterium


text: UIUC

text: live

text: Generic

text: The bulk soil collected from top 10 cm from the field 2nd season after planting of miscanthus.

text: uncultured soil bacterium


text: UIUC

text: live

text: Generic

text: The bulk soil collected from top 10 cm from the field 1st season after planting of restored prairie.

text: uncultured soil bacterium


text: UIUC

text: live

text: Generic

text: The bulk soil collected from top 10 cm from the field 2nd season after planting of restored prairie.

text: uncultured soil bacterium


text: UIUC

text: live

text: Generic

text: The bulk soil collected from top 10 cm from the field 1st season after planting of switchgrass.

text: uncultured soil bacterium


text: UIUC

text: live

text: Generic

text: The bulk soil collected from top 10 cm from the field 2nd season after planting of switchgrass.

text: uncultured soil bacterium


text: UIUC

text: live

text: Generic

text: The bulk soil collected from top 10 cm from the field 1st season after planting of maize.

text: uncultured soil bacterium


text: UIUC

text: live

text: Generic

text: The bulk soil collected from top 10 cm from the field 2nd season after planting of maize.

text: uncultured soil bacterium


Trialeurodes vaporariorum whole insect

text: University of Exeter - Center for Ecology and Conservation

text: live

text: Generic

text: Trialeurodes vaporariorum

text: Pyrosequencing the transcriptome of the Greenhouse whitefly reveals multiple messages encoding insecticide targets and detoxifying enzymes


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: anti-Ini1 (C-20), Santa Cruz Biotechnology, sc-16189

characteristic: antibody

text: HeLa S3 cells (ATCC/National Cell Culture Center)

characteristic: cell line

text: Homo sapiens

text: cervix; adenocarcinoma; epithelial


characteristic: External Id

text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: anti-Brg1 (G-7), Santa Cruz Biotechnology, sc-17796

text: Homo sapiens

text: cervix; adenocarcinoma; epithelial


text: Snyder, Genetics, Stanford University

characteristic: INSDC center name

text: live

text: Generic

text: anti-BAF155 (H-76), Santa Cruz Biotechnology, sc-10756

text: Homo sapiens

text: cervix; adenocarcinoma; epithelial


text: Snyder, Genetics, Stanford University

characteristic: INSDC first public

text: live

text: Generic

text: anti-BAF170 (H-116), Santa Cruz Biotechnology, sc-10757

text: Homo sapiens

text: cervix; adenocarcinoma; epithelial


text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: mycelium

characteristic: isolation source

text: Phytophthora phaseoli race F_18

characteristic: sample name

text: Race F_18

text: Generic sample from Phytophthora phaseoli race F_18


text: Clinical Research Group OE6711, Clinic for Paediatric Pneumology and Neonatology, Medical School Hannover

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: growth condition

text: Pseudomonas putida KT2440

text: P. putida 30°C

text: DSM 6125

text: P. putida 30°C


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Pseudomonas putida KT2440

text: P. putida 10°C

text: DSM 6125

text: P. putida 10°C


text: Gilad, Human Genetics, The University of Chicago

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: lymphoblastoid cell line

characteristic: cell type

characteristic: chip antibody

text: Homo sapiens

text: LCL


text: live

text: Generic

text: lymphoblastoid cell line

text: Pan troglodytes

characteristic: organism

text: LCL

characteristic: title


text: live

text: Generic

text: lymphoblastoid cell line

text: Macaca mulatta

text: LCL


text: live

text: Generic

text: lymphoblastoid cell line

text: Homo sapiens

text: LCL


text: live

text: Generic

text: lymphoblastoid cell line

text: Pan troglodytes

text: LCL


text: live

text: Generic

text: lymphoblastoid cell line

text: Macaca mulatta

text: LCL


PRJNA28331.Klebsiella pneumoniae WGLW1

text: Broad Institute

text: live

text: Generic

text: Klebsiella pneumoniae WGLW1

characteristic: strain

text: Generic sample from Klebsiella pneumoniae subsp. pneumoniae WGLW1


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Fusobacterium nucleatum CTI-3

text: Fusobacterium nucleatum CTI-3

text: Generic sample from Fusobacterium nucleatum CTI-3


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Fusobacterium nucleatum CTI-2

text: Fusobacterium nucleatum CTI-2

text: Generic sample from Fusobacterium nucleatum CTI-2


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Fusobacterium nucleatum CTI-1

text: Fusobacterium nucleatum CTI-1

text: Generic sample from Fusobacterium nucleatum CTI-1


PRJNA28331.Enterococcus sp. HPB0034

text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Enterococcus sp. HPB0034

text: Enterococcus sp. HPB0034

text: Generic sample from Enterococcus sp. HPB0034


PRJNA28331.Eggerthella lenta HPP0013

text: Broad Institute

text: live

text: Generic

text: Eggerthella lenta HPP0013

text: Eggerthella lenta HPP0013

text: Generic sample from Eggerthella lenta HPP0013


name: PRJNA28331.Capnocytophaga sp. oral taxon 336 F0502

text: Broad Institute

text: live

text: Generic

text: Capnocytophaga sp. oral taxon 336 F0502

text: Generic sample from Capnocytophaga sp. oral taxon 336 str. F0502


PRJNA28331.Bacteroides sp. NP1

text: Broad Institute

text: live

text: Generic

text: Bacteroides sp. NP1

text: Bacteroides sp. NP1

text: Generic sample from Bacteroides sp. NP1


PRJNA28331.Clostridium cadaveris CC88A

text: Broad Institute

text: live

text: Generic

text: Male

characteristic: host sex

text: Clostridium cadaveris CC88A

text: Clostridium cadaveris CC88A

text: Generic sample from Clostridium cadaveris CC88A


text: Broad Institute

text: live

text: Generic

text: Male

text: Capnocytophaga sputigena CC21_001D

text: Capnocytophaga sputigena CC21_001D

characteristic: sample name

text: Generic sample from Capnocytophaga sputigena CC21_001D


PRJNA28331.Bacteroides stercoris CC31F

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Male

text: Bacteroides stercoris CC31F

text: Bacteroides stercoris CC31F

text: Generic sample from Bacteroides stercoris CC31F


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB8895

characteristic: antibody catalog number

text: embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for H3K4me1 in ES (129JAE-C57/B6) cells


text: Creyghton, Hubrecht Institute

text: live

characteristic: INSDC status

text: Generic

text: Abcam AB4729

text: embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for H3K27ac in ES (129JAE-C57/B6) cells 1


text: Creyghton, Hubrecht Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Abcam AB4729

text: embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for H3K27ac in ES (129JAE-C57/B6) cells 2


text: Creyghton, Hubrecht Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Abcam AB1791

text: embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for H3 in ES (129JAE-C57/B6) cells


text: Creyghton, Hubrecht Institute

text: live

text: Generic

characteristic: SRA accession

text: Abcam AB8580

text: embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for H3K4me3 in ES (129JAE-C57/B6) cells


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB8895

text: embryonic stem cells

characteristic: cell type

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for H3K4me1 in ES (129JAE-C57/B6) cells containing the dox inducible 4f2a transgene (carey et al.,2010)


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB8895

text: embryonic stem cells

characteristic: chip antibody

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for H3K4me1 in ES (C57/B6 inbred) cells


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Santa Cruz s.c. 10562X

text: Neural progenitors

text: Mus musculus

characteristic: organism

text: Neural progenitors

text: ChIP-Seq for Rfx1 in neural progenitors (129JAE-C57/B6 derived)


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB4729

text: Neural progenitors

text: Mus musculus

text: Neural progenitors

text: ChIP-Seq for H3K27ac in neural progenitors (129JAE-C57/B6 derived)

characteristic: title


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB8895

text: perfused Whole Liver

text: Mus musculus

text: Whole Liver

text: ChIP-Seq for H3K4me1 in whole liver


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB4729

text: perfused Whole Liver

text: Mus musculus

text: Whole Liver

text: ChIP-Seq for H3K27ac in whole liver


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB1791

text: perfused Whole Liver

text: Mus musculus

text: Whole Liver

text: ChIP-Seq for H3 in whole liver


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB8580

text: perfused Whole Liver

text: Mus musculus

text: Whole Liver

text: ChIP-Seq for H3K4me3 in whole liver


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: perfused Whole Liver

text: Mus musculus

text: Whole Liver

text: Seq for whole cell extract from whole liver


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB8895

text: CD19+ proB cells

text: Mus musculus

text: proB cells

text: ChIP-Seq for H3K4me1 in proB cells


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB4729

text: CD19+ proB cells

text: Mus musculus

text: proB cells

text: ChIP-Seq for H3K27ac in proB cells


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB1791

text: CD19+ proB cells

text: Mus musculus

text: proB cells

text: ChIP-Seq for H3 in proB cells


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB8580

text: CD19+ proB cells

text: Mus musculus

text: proB cells

text: ChIP-Seq for H3K4me3 in proB cells


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: CD19+ proB cells

text: Mus musculus

text: proB cells

text: Seq for whole cell extract from proB cells


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB8895

text: mefs

text: Mus musculus

text: mouse embryonic fibroblasts

text: ChIP-Seq for H3K4me1 in mefs


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB1791

text: mefs

text: Mus musculus

text: mouse embryonic fibroblasts

text: ChIP-Seq for H3 in mefs


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Abcam AB8895

text: iPS cells

text: Mus musculus

text: iPS cells

text: ChIP-Seq for H3K4me1 in mefs derived iPS cells


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: Seq for whole cell extract from ES (129JAE-C56/B6) cells


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Santa Cruz s.c. 585

text: embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for p300 in ES (129JAE-C57/B6) cells 1


text: Creyghton, Hubrecht Institute

text: live

text: Generic

text: Santa Cruz s.c. 585

text: embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for p300 in ES (129JAE-C57/B6) cells 2


sample NA12716

text: Leibniz Institute for Age Research - Fritz Lipmann Institute

text: live

text: Generic

text: B-lymphocyte, EBV transformed cell lines GM12716 (CEPH Utah pedigree 1358, male, caucasian, DNA isolated using QIAamp DNA-Blood Mini Kit and enriched by customized Nimblegen sequence capture array

characteristic: description

text: Homo sapiens


sample NA12760

characteristic: External Id

text: live

text: Generic

text: Homo sapiens


text: Institute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University

characteristic: INSDC center name

text: live

text: Generic

text: Tibetan pigs (a black, Chinese indigenous breed)

characteristic: breed

text: adult (210-days-old)

characteristic: developmental stage

text: female

characteristic: gender

text: Sus scrofa

text: Ovary

text: Ovary

characteristic: tissue

text: Ovary tissue small RNA


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: adult (210-days-old)

text: male

text: Sus scrofa

text: Testis

text: Testis

text: Testis tissue small RNA


text: J. Craig Venter Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Escherichia coli 5.0588 is a strain isolated from cow, its O antigen type (serotype) is O8, its H antigen type is H-. Its genome encodes for stx1 and stx2.

text: Escherichia coli 5.0588

characteristic: strain

text: Sequencing of non-Shiga toxin-producing E. coli 5.0588


text: J. Craig Venter Institute

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Escherichia coli 99.0741 is a strain isolated from food, its O antigen type (serotype) is O91, its H antigen type is H-. Its genome encodes for stx1 and stx2.

text: Escherichia coli 97.0259

text: Sequencing of non-Shiga toxin-producing E. coli 99.0741


text: J. Craig Venter Institute

text: live

text: Generic

text: Escherichia coli 97.0259 is a strain isolated from cow, its O antigen type (serotype) is O11, its H antigen type is H-. Its genome encodes for stx2, but not for stx1.

text: Escherichia coli 99.0741

characteristic: organism

text: Sequencing of non-Shiga toxin-producing E. coli 97.0259


text: J. Craig Venter Institute

text: live

text: Generic

text: Escherichia coli 9.1649 is a strain isolated from pig, its O antigen type (serotype) is O2, its H antigen type is H-. Its genome encodes for stx2, but not for stx1.

text: Escherichia coli 9.1649

text: Sequencing of non-Shiga toxin-producing E. coli 9.1649

characteristic: title


text: Monsanto Company

text: live

text: Generic

text: These data represent whole-genome shotgun sequences of the wild diploid Peruvian cotton species Gossypium ramondii Ulbr., the closest extant representative of the Dt subgenome of the domesticated allotetraploids G. hirsutum L. (Upland Cotton) and G. barbadense L. (Pima Cotton). The data contained in these accessions comprises roughly 135x genomic coverage of Illumina paired-end 2x100 sequence generated by Monsanto and Illumina as part of a multi-data type approach to shotgun sequencing of a diploid cotton genome.

characteristic: description

text: Gossypium raimondii

text: whole genome sequencing of Gossypium raimondii genome


High Arctic freshwater lake

characteristic: External Id

text: Aarhus University, Denmark

text: live

text: Generic

text: environmental samples

text: High Arctic Snow and Freshwater 16S rDNA metagenomes


High Arctic snow (31-52 cm depth)

text: Aarhus University, Denmark

characteristic: INSDC center name

text: live

text: Generic

text: environmental samples


High Arctic snow (75-90 cm depth)

text: Aarhus University, Denmark

text: live

text: Generic

text: environmental samples


High Arctic snow (96-112 cm depth)

text: Aarhus University, Denmark

text: live

text: Generic

text: environmental samples


CM2 sample

text: live

text: Generic

text: High microbial abundance (HMA) spongi Cacospongia mycofijiensis were collected offshore Vanuatu, Southern Pacific Ocean, and DNA was isolated with the Fast DNA spin kit for soil.

text: Cacospongia

text: CM2, collection number 02600


CM5, sample

text: live

text: Generic

text: High microbial abundance (HMA) spongi Cacospongia mycofijiensis were collected offshore Vanuatu, Southern Pacific Ocean, and DNA was isolated with the Fast DNA spin kit for soil

text: Cacospongia

text: CM5, collection number 02601


text: Institute for Genomics and Systems Biology, University of Chicago

text: live

text: Generic

text: Custom

characteristic: antibody catalog

text: Renkawitz Lab

characteristic: antibody manufacturer

text: CTCF-C

characteristic: antibody name

text: white prepupae

text: ChIP

characteristic: fraction

text: Drosophila melanogaster

text: white prepupae

text: Dmel_WPP_CTCF_ChIPSeq_1, 2 and 3


characteristic: INSDC first public

text: live

text: Generic

text: white prepupae

characteristic: developmental stage

text: input

text: Drosophila melanogaster

text: white prepupae


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Custom

text: Renkawitz Lab

text: CTCF-C

text: white prepupae

text: ChIP

text: Drosophila simulans

text: white prepupae

text: Dsim_WPP_CTCF_ChIPSeq_1, 2 and 3


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: white prepupae

text: input

text: Drosophila simulans

text: white prepupae


text: live

text: Generic

characteristic: NCBI submission package

text: Custom

text: Renkawitz Lab

text: CTCF-C

text: white prepupae

text: ChIP

text: Drosophila yakuba

text: white prepupae

text: Dyak_WPP_CTCF_ChIPSeq_1, 2 and 3


text: live

text: Generic

characteristic: SRA accession

text: white prepupae

text: input

text: Drosophila yakuba

text: white prepupae


text: live

text: Generic

text: Custom

text: Renkawitz Lab

text: CTCF-C

text: white prepupae

text: ChIP

text: Drosophila pseudoobscura

characteristic: organism

text: white prepupae

text: Dpse_WPP_CTCF_ChIPSeq_1, 2 and 3


text: live

text: Generic

text: white prepupae

text: input

text: Drosophila pseudoobscura

text: white prepupae

characteristic: title


Energy Farm Default

text: UIUC

text: live

text: Generic

text: Default Sample

characteristic: description

text: uncultured soil bacterium

text: Energy Farm Default


characteristic: External Id

text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

characteristic: catalogue number

text: Mesenchymal stem cells-derived adipocytes

characteristic: cell type

characteristic: chip antibody

characteristic: lot number

text: Homo sapiens

text: less than 7

characteristic: passages

text: Adipocytes

text: Fully differentiated

characteristic: strain

text: Epitomics

characteristic: vendor


text: Fraenkel, Biological Engineering, MIT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: less than 7

text: Adipocytes

text: Fully differentiated

text: Santa Cruz Biotechnology


text: Fraenkel, Biological Engineering, MIT

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: C/EBPα

text: Homo sapiens

text: less than 7

text: Adipocytes

text: Fully differentiated

text: Santa Cruz Biotechnology


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: IgG Control

text: Homo sapiens

characteristic: organism

text: less than 7

text: Adipocytes

text: Fully differentiated

text: Santa Cruz Biotechnology


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Schizosaccharomyces octosporus yFS286

characteristic: sample name

text: Generic sample from Schizosaccharomyces octosporus yFS286

characteristic: title


name: 1126911804022 Streptococcus criceti HS-6 SCR1-BP3KB-A4NB-01-661 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus criceti HS-6

characteristic: description

text: Streptococcus criceti HS-6

text: Generic sample from Streptococcus criceti HS-6


name: 1126902886022 Streptococcus downei Mfe 28 SD01-BP3KB-A8NB-01-686 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus downei Mfe 28

text: Streptococcus downei MFe28

text: Generic sample from Streptococcus downei MFe28


name: 1126911804046 Streptococcus ictaluri 707-05 SIC1-BP3KB-A2NB-01-637 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus ictaluri 707-05

text: Streptococcus ictaluri 707-05

text: Generic sample from Streptococcus ictaluri 707-05


name: 1126879884100 Streptococcus macacae NCTC 11558 SMA1-BP3KB-A1NB-01-690 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus macacae NCTC 11558

text: Streptococcus macacae NCTC 11558

text: NCTC 11558

text: Generic sample from Streptococcus macacae NCTC 11558


name: 1126909034512 Streptococcus parauberis NCFD 2020 T SPA3-BP3KB-A5NB-01-593 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus parauberis NCFD 2020 T

text: Streptococcus parauberis NCFD 2020

text: NCFD 2020

text: Generic sample from Streptococcus parauberis NCFD 2020


name: 1126902254009 Streptococcus porcinus Jelinkova 176 T SP01-BP3KB-A6NB-01-594 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus porcinus Jelinkova 176 T

text: Jelinkova 176

text: Generic sample from Streptococcus porcinus str. Jelinkova 176


name: 1126902886046 Streptococcus pseudoporcinus LQ940-04T SPS1-BP3KB-A3NB-01-611 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus pseudoporcinus LQ940-04T

text: Streptococcus pseudoporcinus LQ 940-04

text: LQ 940-04

text: Generic sample from Streptococcus pseudoporcinus LQ 940-04


name: 1126911804032 Streptococcus urinalis 2285-97 SUR1-BP3KB-A7NB-01-620 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus urinalis 2285-97

text: Streptococcus urinalis 2285-97

text: Generic sample from Streptococcus urinalis 2285-97


text: National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health

text: live

text: Generic

text: sc 8973

characteristic: antibody catalog number

characteristic: antibody lot

text: Santa Cruz

characteristic: antibody vendor

text: DMC1 (C-20)

characteristic: chip antibody

text: Hop2 -/-

characteristic: genotype/variation

text: Mus musculus

text: adult testis

text: 13R/9R cross

text: Set A, DMC1


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: sc 8973

text: Santa Cruz

text: DMC1 (C-20)

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: 13R/9R cross

characteristic: strain

text: Set B, DMC1


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: sc 8973

text: Santa Cruz

text: DMC1 (C-20)

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: 13R/9R cross

text: Set C, DMC1


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: sc 8973

text: Santa Cruz

text: DMC1 (C-20)

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: 9R/13R cross

text: Set D, DMC1


characteristic: External Id

text: live

text: Generic

text: sc 8973

text: Santa Cruz

text: DMC1 (C-20)

text: Hop2 -/-

text: Mus musculus

characteristic: organism

text: adult testis

text: 13R/9R and 9R/13R crosses

text: Set ABCD, DMC1


text: live

text: Generic

text: sc 8973

text: Santa Cruz

text: DMC1 (C-20)

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: 13R/9R cross

text: Set E, DMC1

characteristic: title


text: live

text: Generic

text: sc 8349

characteristic: antibody catalog number

text: Santa Cruz

text: RAD51 (H92)

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: 13R/9R cross

text: Set F, RAD51


text: live

text: Generic

text: sc 8349

characteristic: antibody lot

text: Santa Cruz

text: RAD51 (H92)

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: 9R/13R cross

text: Set G, RAD51


text: live

text: Generic

text: sc 8973

text: Santa Cruz

characteristic: antibody vendor

text: DMC1 (C-20)

text: Spo11 -/-

text: Mus musculus

text: adult testis

text: C57BL/6J/129R cross

text: Set H, DMC1


text: live

text: Generic

text: input DNA and IgG

characteristic: chip antibody

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: 13R/9R and 9R/13R crosses

text: Set I, Pool of controls for Sets A, B, C, D, E, F, G and H


text: live

text: Generic

text: sc 8973

text: Santa Cruz

text: DMC1 (C-20)

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: pups testis

text: 9R/13R cross

text: Set J, DMC1


characteristic: INSDC center name

text: live

text: Generic

text: sc 8973

text: Santa Cruz

text: DMC1 (C-20)

text: wild type

text: Mus musculus

text: pups testis

text: 9R/13R cross

text: Set K, DMC1


characteristic: INSDC first public

text: live

text: Generic

text: sc 8973

text: Santa Cruz

text: DMC1 (C-20)

text: wild type

text: Mus musculus

text: pups testis

text: 9R/13R cross

text: Set JK, DMC1


text: live

text: Generic

text: input DNA and IgG

text: wild type

text: Mus musculus

text: pups testis

text: 9R/13R cross

characteristic: strain

text: Set L, Control for Sets J and K


characteristic: INSDC last update

text: live

text: Generic

text: Millipore

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: 13R/9R cross

text: Set M, H3K4me3, adult testis


characteristic: INSDC secondary accession

text: live

text: Generic

text: input DNA

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: 13R/9R cross

text: Set N, Control for Set M


text: live

characteristic: INSDC status

text: Generic

text: Millipore

text: Hop2 -/-

text: Mus musculus

text: liver

text: 13R/9R cross

text: Set O, H3K4me3, liver


text: live

text: Generic

characteristic: NCBI submission model

text: input DNA

text: wild type

text: Mus musculus

text: liver

text: 13R/9R cross

text: Set P, Control for Set O


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

characteristic: NCBI submission package

text: Abcam AB6002

text: BGO3 (feeder free)

characteristic: cell type

text: Homo sapiens

text: Embyonic stem cells

text: H3K27me3 ChIPseq in human ES cells


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: Abcam AB3594

text: BGO3 (feeder free)

text: Homo sapiens

text: Embyonic stem cells

text: H3K79me2 ChipSeq in human ES cells


text: live

text: Generic

text: Abcam AB12073

text: BGO3 (feeder free)

text: Homo sapiens

characteristic: organism

text: Embyonic stem cells

text: Suz12 ChipSeq in human ES cells

characteristic: title


text: Southern Cross University

text: live

text: Generic

text: This sample represents a pool of 30 individuals collected from the geographical range of E. pilularis, using this pooled DNA as a template for PCR 48 wood formation genes have been amplified and sequenced on an Illumina GA IIx.

characteristic: description

text: Eucalyptus pilularis


text: Southern Cross University

text: live

text: Generic

text: This sample represents a pool of 30 individuals collected from the geographical range of E. globulus, using this pooled DNA as a template for PCR 48 wood formation genes have been amplified and sequenced on an Illumina GA IIx.

text: Eucalyptus globulus subsp. globulus


text: live

text: Generic

text: Santa Cruz SC-1082

characteristic: antibody catalog number

text: Secondary

text: Mus musculus

text: Mouse Embryonic Fibroblasts with Dox-inducible Klf4, Sox2 and Oct4 (KSO)

text: ChIP-Seq for E2F4 in 2nd MEF


text: live

text: Generic

text: Abcam AB6002

text: Secondary

characteristic: chip antibody

text: Mus musculus

text: ChIP-Seq for H3K27me3 in 2nd MEF


text: live

text: Generic

text: Covance MMS-126R

text: Secondary

text: RNA Pol II (8WG16)

text: Mus musculus

text: ChIP-Seq for RNA Pol II in 2nd MEF


text: live

text: Generic

text: Secondary

text: Mus musculus

text: WCE in 2nd MEF 1


text: live

text: Generic

text: Secondary

text: Mus musculus

text: WCE in 2nd MEF B2


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Gossypium raimondii

text: Gossypium raimondii

text: Generic sample from Gossypium raimondii


text: Wysocka lab, Chemical and Systems Biology, Stanford University

text: live

text: Generic

text: H9 ESC

characteristic: cell line

text: Homo sapiens

text: Human embryonic stem cells


characteristic: INSDC center name

text: live

text: Generic

text: NEC

text: Homo sapiens

text: Neuroectodermal sphere cells (NEC) derived from H9 ESC


characteristic: INSDC first public

text: live

text: Generic

text: H9 ESC

text: Homo sapiens

text: Human embryonic stem cells


text: live

text: Generic

text: H9 ESC

text: input

text: Homo sapiens

text: Human embryonic stem cells


text: live

text: Generic

text: H9 ESC

text: FAIRE

text: Homo sapiens

text: Human embryonic stem cells


text: live

text: Generic

text: NEC

text: Homo sapiens


text: live

text: Generic

text: NEC

text: input

text: Homo sapiens


text: Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences

text: live

text: Generic

text: human embryonic stem cell (hESC) H9

text: diploid

characteristic: chromosome

text: Homo sapiens

characteristic: passages

text: polyAminus RNA

characteristic: rna

text: hES h9 cells


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: human embryonic stem cell (hESC) H9

text: diploid

text: Homo sapiens

text: polyAplus RNA

text: hES h9 cells


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: HeLa

text: highly polyploid

text: Homo sapiens

text: polyAminus RNA

text: HeLa cells


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: HeLa

text: highly polyploid

text: Homo sapiens

text: polyAplus RNA

text: HeLa cells


Human salivary streptococcal CRISPRs

text: UCSD

text: live

text: Generic

text: 16S rRNA metagenome data from human subject saliva over time

text: Colletotrichum malvarum

characteristic: organism

text: Salivary Microbial Communities

characteristic: title


Caudate1 SA

text: Roslin Institute, University of Edinburgh

text: live

text: Generic

text: Genomic DNA extracted from cadaveric human brain samples. Caudate replicate 1, subject A.

characteristic: description

text: Homo sapiens

text: RC-seq: human brain


Caudate2 SA

text: live

text: Generic

text: Genomic DNA extracted from cadaveric human brain samples. Caudate replicate 2, subject A.

text: Homo sapiens

text: RC-seq: human brain


Hippocampus SB

text: live

text: Generic

text: Genomic DNA extracted from cadaveric human brain samples. Hippocampus, subject C.

text: Homo sapiens

text: RC-seq: human brain


Caudate SB

text: live

text: Generic

text: Genomic DNA extracted from cadaveric human brain samples. Caudate, subject C.

text: Homo sapiens

text: RC-seq: human brain


Hippocampus SA

text: live

text: Generic

text: Genomic DNA extracted from cadaveric human brain samples. Hippocampus, subject A.

text: Homo sapiens

text: RC-seq: human brain


text: live

text: Generic

text: Gossypium raimondii

text: Gossypium raimondii

text: Generic sample from Gossypium raimondii


text: Broad Institute

text: live

text: Generic

text: Schizosaccharomyces octosporus yFS286

characteristic: sample name

characteristic: strain

text: Generic sample from Schizosaccharomyces octosporus yFS286


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

characteristic: collection date

text: PULMONARY

characteristic: isolation source

text: Mycobacterium tuberculosis HN4695

text: Generic sample from Mycobacterium tuberculosis HN4695


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN1889

text: Generic sample from Mycobacterium tuberculosis HN1889


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4690

text: Generic sample from Mycobacterium tuberculosis HN4690


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN1475

text: Generic sample from Mycobacterium tuberculosis HN1475


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN731

text: Generic sample from Mycobacterium tuberculosis HN731


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4701

text: Generic sample from Mycobacterium tuberculosis HN4701


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN3430

text: Generic sample from Mycobacterium tuberculosis HN3430


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4140

text: Generic sample from Mycobacterium tuberculosis HN4140


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis NHN1816

text: Generic sample from Mycobacterium tuberculosis NHN1816


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4682

text: Generic sample from Mycobacterium tuberculosis HN4682


text: Broad Institute

text: live

text: Generic

text: LYMPHATIC

text: Mycobacterium tuberculosis HN4694

text: Generic sample from Mycobacterium tuberculosis HN4694


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN985

text: Generic sample from Mycobacterium tuberculosis HN985


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis NHN1754

text: Generic sample from Mycobacterium tuberculosis NHN1754


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN1434

text: Generic sample from Mycobacterium tuberculosis HN1434


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN3635

text: Generic sample from Mycobacterium tuberculosis HN3635


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN1418

text: Generic sample from Mycobacterium tuberculosis HN1418


text: Broad Institute

text: live

text: Generic

characteristic: bi gssr sample id

characteristic: bi gssr sample lsid

text: Genomic DNA

characteristic: bi gssr sample type

text: Mycobacterium tuberculosis HN3166

characteristic: sample collection date

characteristic: sample id

text: PULMONARY

characteristic: tissue source

text: Mycobacterium tuberculosis HN3166 Genomic DNA Sample 58402.0


characteristic: External Id

text: Broad Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: PULMONARY

text: Mycobacterium tuberculosis HN4171

text: Generic sample from Mycobacterium tuberculosis HN4171


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: PULMONARY

text: Mycobacterium tuberculosis HN1416

characteristic: organism

characteristic: sample name

characteristic: strain

text: Generic sample from Mycobacterium tuberculosis HN1416

characteristic: title


text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: collection date

text: PULMONARY

characteristic: isolation source

text: Mycobacterium tuberculosis HN4048

text: Generic sample from Mycobacterium tuberculosis HN4048


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN1687

text: Generic sample from Mycobacterium tuberculosis HN1687


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN2501

text: Generic sample from Mycobacterium tuberculosis HN2501


text: Broad Institute

text: live

text: Generic

text: KNEE SKIN TISSUE

text: Mycobacterium tuberculosis HN4692

text: Generic sample from Mycobacterium tuberculosis HN4692


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN3226

text: Generic sample from Mycobacterium tuberculosis HN3226


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4685

text: Generic sample from Mycobacterium tuberculosis HN4685


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis NHN1691

text: Generic sample from Mycobacterium tuberculosis NHN1691


text: Broad Institute

text: live

text: Generic

text: LYMPHATIC

text: Mycobacterium tuberculosis HN563

text: Generic sample from Mycobacterium tuberculosis HN563


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN3537

text: Generic sample from Mycobacterium tuberculosis HN3537


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4698

text: Generic sample from Mycobacterium tuberculosis HN4698


text: Broad Institute

text: live

text: Generic

text: BLOOD

text: Mycobacterium tuberculosis HN312

text: Generic sample from Mycobacterium tuberculosis HN312


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis NHN1765

text: Generic sample from Mycobacterium tuberculosis NHN1765


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4696

text: Generic sample from Mycobacterium tuberculosis HN4696


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN1323

text: Generic sample from Mycobacterium tuberculosis HN1323


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN1104

text: Generic sample from Mycobacterium tuberculosis HN1104


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis NHN1751

text: Generic sample from Mycobacterium tuberculosis NHN1751


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis NHN1664

text: Generic sample from Mycobacterium tuberculosis NHN1664


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4707

text: Generic sample from Mycobacterium tuberculosis HN4707


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4684

text: Generic sample from Mycobacterium tuberculosis HN4684


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN3760

text: Generic sample from Mycobacterium tuberculosis HN3760


text: Broad Institute

text: live

text: Generic

text: LYMPHATIC

text: Mycobacterium tuberculosis HN1430

text: Generic sample from Mycobacterium tuberculosis HN1430


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4699

text: Generic sample from Mycobacterium tuberculosis HN4699


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN3282

text: Generic sample from Mycobacterium tuberculosis HN3282


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4691

text: Generic sample from Mycobacterium tuberculosis HN4691


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4702

text: Generic sample from Mycobacterium tuberculosis HN4702


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4706

text: Generic sample from Mycobacterium tuberculosis HN4706


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN4274

text: Generic sample from Mycobacterium tuberculosis HN4274


text: Broad Institute

text: live

text: Generic

text: PULMONARY

text: Mycobacterium tuberculosis HN353

text: Generic sample from Mycobacterium tuberculosis HN353


Bathymodiolus azoricus

text: IMAR-Center. University of the Azores

text: live

text: Generic

text: Gill tissues from 6 different animals were dissected from -80ºC preserved animals and processed for total RNA extraction using the RiboPure™ kit (Ambion®, Austin, TX). The quality of total RNA was verified on a 1.4% (w/v) agarose-MOPS-formaldehyde denaturating gels and by assessing the A260/280 and A260/230 ratios using the NanoVue spectrophotometer (GE Healthcare, Piscataway, NJ). Poly-A RNA was extracted from each total RNA sample using the Poly(A)Purist™ mRNA Purification Kit according to manufacturer’s instructions (Ambion Inc, Applied Biosystems). The mRNA from each gill tissue sample from all 6 animals (approximately 20-50 µg/ml) was pooled and used as the source of starting material for cDNA synthesis and the production of normalized cDNA intended for 454 sequencing. The normalization process was performed by Evrogen (Moscow, Russia) and based on the SMART double-stranded cDNA synthesis methodology using a modified template-switching approach that allows the introduction of known adapter sequences to the both ends of the first-strand cDNA. cDNA was further amplified by PCR and normalized using Duplex-Specific Nuclease-technology. Four micrograms of normalized cDNA were sequenced in a full plate of 454 GS FLX Titanium according to the standard manufacturer’s instructions (Roche-454 Life Sciences) at Biocant (Cantanhede, Portugal, www.biocant.pt). Following 454 sequencing, the quality trimming and size selection of reads were determined by the 454 software after which the SMART adaptor sequences were removed from reads using a custom script and the poly-A masked using MIRA, to assure correct assembly of raw sequencing reads. A total of 778,996 quality reads were subjected to the MIRA assembler (version 3.0.5), with default parameters.

characteristic: description

text: Bathymodiolus azoricus

text: Bathymodiolus azoricus (gill tissues) transcriptome


name: 1126909284578 Streptococcus urinalis 2285-97 SUR1-PE-ILI8-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus urinalis 2285-97

text: Streptococcus urinalis 2285-97

text: Generic sample from Streptococcus urinalis 2285-97


name: 1126909284562 Streptococcus criceti HS-6 SCR1-PE-ILI1-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus criceti HS-6

text: Streptococcus criceti HS-6

text: Generic sample from Streptococcus criceti HS-6


name: 1126909284564 Streptococcus downei Mfe 28 SDO1-PE-ILI2-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus downei Mfe 28

text: Streptococcus downei MFe28

text: Generic sample from Streptococcus downei MFe28


name: 1126902267125 Acinetobacter baumannii Naval-17 ACINE08-BP3KB-A1NB-01-607 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Acinetobacter baumannii Naval-17

text: Acinetobacter baumannii Naval-17

text: Generic sample from Acinetobacter baumannii Naval-17


name: 1126926789517 Acinetobacter baumannii OIFC032 ACN02-BP3KB-A5NB-01-596 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Acinetobacter baumannii OIFC032

text: Acinetobacter baumannii OIFC032

text: Generic sample from Acinetobacter baumannii OIFC032


name: 1126932544012 Acinetobacter baumannii OIFC189 ACINETOBACTER06-BP3KB-A2NB-01-610 Sample

text: 26195261; 33659219

text: J. Craig Venter Institute

text: live

text: USA

text: Generic

text: Total DNA isolated from Acinetobacter baumannii OIFC189

text: Acinetobacter

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Acinetobacter baumannii OIFC189

text: Generic sample from Acinetobacter baumannii OIFC189

type: AMR curated data - CABBAGE

value: amikacin

value: CLSI

value: broth dilution

value: BD Phoenix

value: intermediate

value: Acinetobacter baumannii

value: imipenem

value: susceptible

value: ceftriaxone

value: resistant

value: cefepime

value: gentamicin

value: trimethoprim-sulfamethoxazole

value: ertapenem

value: ampicillin

value: azithromycin

value: tetracycline

value: tobramycin

value: cefazolin

value: levofloxacin

value: aztreonam


name: 1126902267133 Streptococcus macacae NCTC 11558 SMA1-PE-ILI4-01 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Total DNA isolated from Streptococcus macacae NCTC 11558

text: Streptococcus macacae NCTC 11558

text: NCTC 11558

text: Generic sample from Streptococcus macacae NCTC 11558


name: 1126934044012 Acinetobacter baumannii Naval-18 ACINETOBACTER09-BP3KB-A12NB-01-615 Sample

text: 26195261; 33659219

text: J. Craig Venter Institute

text: live

characteristic: INSDC status

text: USA

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Total DNA isolated from Acinetobacter baumannii Naval-18

text: Acinetobacter

text: Homo sapiens

text: Wound

text: skin or soft tissue

text: Acinetobacter baumannii Naval-18

text: Generic sample from Acinetobacter baumannii Naval-18

value: CLSI

value: broth dilution

value: BD Phoenix

value: amikacin

value: ceftazidime

value: ciprofloxacin


name: 1126932544025 Acinetobacter baumannii Naval-81 ACN10-BP3KB-A8NB-01-639 Sample

text: 26195261; 33659219

text: J. Craig Venter Institute

text: live

text: USA

text: Generic

characteristic: SRA accession

text: Total DNA isolated from Acinetobacter baumannii Naval-81

text: Acinetobacter

text: Homo sapiens

text: blood

text: blood

text: Acinetobacter baumannii Naval-81

characteristic: organism

text: Generic sample from Acinetobacter baumannii Naval-81

value: resistant

value: Acinetobacter baumannii

value: cefepime

value: susceptible

value: ceftriaxone

value: intermediate

value: amoxicillin-clavulanic acid

value: imipenem


name: 1126915004046 Acinetobacter baumannii Canada BC-5 ACN07-BP3KB-A7NB-01-647 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Acinetobacter baumannii Canada BC-5

text: Acinetobacter baumannii Canada BC-5

text: Canada BC-5

characteristic: strain

text: Generic sample from Acinetobacter baumannii Canada BC-5

characteristic: title


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Geobacillus sp. C56-T2

text: Geobacillus sp. C56-T2

characteristic: sample number

text: Generic sample from Geobacillus sp. C56-T2


E. pyrocarpa diversity pool (n=30)

text: Southern Cross University

text: live

text: Generic

text: This sample represents a pool of 30 individuals collected from the geographical range of E. pyrocarpa, using this pooled DNA as a template for PCR 48 wood formation genes have been amplified and sequenced on an Illumina GA IIx.

characteristic: description

text: Eucalyptus pyrocarpa

text: Balancing selection in wood formation genes of Eucalyptus: E. pyrocarpa diversity pool (n=30)


PRJNA51977.C57BL/6J P38062

text: Broad Institute

text: live

text: Generic

text: female

characteristic: host sex

text: Mus musculus

text: C57BL/6J P38062

characteristic: sample name

text: Generic sample from Mus musculus


PRJNA51977.C57BL/6J P39422_Sample 3

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: C57BL/6J P39422_Sample 3

text: Generic sample from Mus musculus


PRJNA51977.Made from GSSR# 50900.5

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: Made from GSSR# 50900.5

text: Generic sample from Mus musculus


PRJNA51977.C57BL/6J P39422_Sample 4

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: C57BL/6J P39422_Sample 4

text: Generic sample from Mus musculus


PRJNA51977.C57BL/6J P39422_Sample 1

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: C57BL/6J P39422_Sample 1

text: Generic sample from Mus musculus


PRJNA51977.C57BL/6J P39422_Sample 2

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: C57BL/6J P39422_Sample 2

text: Generic sample from Mus musculus


name: 1126909653972 Streptococcus ictaluri 707-05 SIC1-PE-ILI3-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus ictaluri 707-05

text: Streptococcus ictaluri 707-05

text: Generic sample from Streptococcus ictaluri 707-05


name: 1126909653974 Streptococcus parauberis NCFD 2020 T SPA3-PE-ILI5-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus parauberis NCFD 2020 T

text: Streptococcus parauberis NCFD 2020

text: NCFD 2020

text: Generic sample from Streptococcus parauberis NCFD 2020


name: 1126909653976 Streptococcus porcinus Jelinkova 176 T SPO1-PE-ILI6-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus porcinus Jelinkova 176 T

text: Jelinkova 176

text: Generic sample from Streptococcus porcinus str. Jelinkova 176


name: 1126909653978 Streptococcus pseudoporcinus LQ940-04T SPS1-PE-ILI7-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Streptococcus pseudoporcinus LQ940-04T

text: Streptococcus pseudoporcinus LQ 940-04

text: LQ 940-04

text: Generic sample from Streptococcus pseudoporcinus LQ 940-04


Dcr-C57BL/6 9:105

text: The Jackson Laboratory

text: live

text: Generic

text: Mus musculus

text: Targetted resequencing of C57BL/6 genomic DNA on Chromosome 9 at 105 mb from a mouse strain with a spontaneous mutation.


text: Gene Expression Omnibus

text: live

text: Generic

text: Replicate 1

characteristic: batch

text: Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: H1 Cell Line treated with BMP4, biological replicate 1 (r1)

text: H1 cells were cultured in TeSR containing 50 ng/ml BMP4 for 5 days

characteristic: differentiation method

text: embryonic stem cell differentiated by treatment with BMP4

characteristic: differentiation stage

characteristic: line

text: TeSR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: 27, including 16 passages in TeSR

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Replicate 2

text: Thomson Laboratory

text: Cell Line

text: H1 Cell Line treated with BMP4, biological replicate 2 (r2)

text: TeSR

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: 25, including 10 passages in TeSR

text: male

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: batch

text: James Thompson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cells received from the James Thompson laboratory. Cells are from the H1 line.

characteristic: description

text: Embryonic Stem Cell

characteristic: lineage

text: mTeSER

text: genomic DNA

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: James Thompson Laboratory

text: Cell Line

characteristic: line

text: Embryonic Stem Cell

text: mTeSER

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Between 20 and 40

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


characteristic: External Id

text: National Center for Genome Resources

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Arabidopsis thaliana

text: Generic sample from Arabidopsis thaliana


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Coemansia reversa NRRL 1564

text: Coemansia reversa NRRL 1564

characteristic: organism

characteristic: sample number

text: NRRL 1564

characteristic: strain

text: Generic sample from Coemansia reversa NRRL 1564

characteristic: title


characteristic: INSDC first public

text: live

text: Generic

text: Serratia sp. AS12

characteristic: description

text: Serratia sp. AS12

text: Generic sample from Serratia sp. AS12


text: live

text: Generic

text: Conidiobolus coronatus NRRL28638

text: Conidiobolus coronatus NRRL 28638

text: Generic sample from Conidiobolus coronatus NRRL 28638


text: live

text: Generic

text: Serratia sp. AS9

text: Serratia plymuthica AS9

text: Generic sample from Serratia plymuthica AS9


text: live

text: Generic

text: Serratia sp. S4

text: Serratia sp. S4

text: Generic sample from Serratia sp. S4


text: live

text: Generic

text: Hanseniaspora valbyensis

text: Hanseniaspora valbyensis NRRL Y-1626

text: Generic sample from Hanseniaspora valbyensis NRRL Y-1626


text: live

text: Generic

text: Ganoderma spp spp

text: Ganoderma sp. 10597 SS1

text: Generic sample from Ganoderma sp. 10597 SS1


text: live

text: Generic

text: halophilic archaeon DL31

text: halophilic archaeon DL31

text: Generic sample from halophilic archaeon DL31


text: live

text: Generic

text: Phycomyces blakesleeanus C107

text: Phycomyces blakesleeanus C107

text: Generic sample from Phycomyces blakesleeanus C107


text: live

text: Generic

text: Gossypium raimondii

text: Gossypium raimondii

text: Generic sample from Gossypium raimondii


PRJNA51977.C57BL/6J P39422

text: Broad Institute

text: live

text: Generic

text: female

characteristic: host sex

text: Mus musculus

text: C57BL/6J P39422

characteristic: sample name

text: Generic sample from Mus musculus


PRJNA51977.mouse lig 3 mixed

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse lig 3 mixed

text: Generic sample from Mus musculus


PRJNA51977.mouse lig 10-12kb

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse lig 10-12kb

text: Generic sample from Mus musculus


PRJNA51977.mouse 7-8kb

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse 7-8kb

text: Generic sample from Mus musculus


PRJNA51977.mouse 12-14kb

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse 12-14kb

text: Generic sample from Mus musculus


PRJNA51977.mouse lig6A mixed

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse lig6A mixed

text: Generic sample from Mus musculus


PRJNA51977.mouse lig 8B mixed

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse lig 8B mixed

text: Generic sample from Mus musculus


PRJNA51977.mouse lig 6B mixed

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse lig 6B mixed

text: Generic sample from Mus musculus


text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse 12-14kb_C57BL/6J P38062

text: Generic sample from Mus musculus


PRJNA51977.mouse lig 8A mixed

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse lig 8A mixed

text: Generic sample from Mus musculus


PRJNA51977.mouse lig 7 mixed

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse lig 7 mixed

text: Generic sample from Mus musculus


PRJNA51977.mouse 6-7kb

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse 6-7kb

text: Generic sample from Mus musculus


PRJNA51977.mouse 10-12kb

text: Broad Institute

text: live

text: Generic

text: Mus musculus

text: mouse 10-12kb

text: Generic sample from Mus musculus


text: live

text: Generic

text: Deinococcus sp. 2009

text: Deinococcus ficus

text: Generic sample from Deinococcus sp. 2009


text: live

text: Generic

text: Bjerkandera adusta HHB-12826-SP SB-22

text: Bjerkandera adusta HHB-12826-SP SB-22

text: HHB-12826-SP SB-22

text: Generic sample from Bjerkandera adusta HHB-12826-SP SB-22


text: live

text: Generic

text: Phycomyces blakesleeanus C307

text: Phycomyces blakesleeanus C307

text: Generic sample from Phycomyces blakesleeanus C307


text: live

text: Generic

text: Dichomitus squalens LYAD-421 SS1

text: Dichomitus squalens LYAD-421 SS1

text: LYAD-421 SS1

text: Generic sample from Dichomitus squalens LYAD-421 SS1


text: Broad Institute

text: live

text: Generic

characteristic: collection date

text: Mus musculus

text: from GSSR Id: 50900.5_C57BL/6J P38062

text: Generic sample from Mus musculus


characteristic: External Id

text: live

text: Generic

text: Stereum hirsutum SS1

text: Stereum hirsutum FP-91666 SS1

text: Generic sample from Stereum hirsutum FP-91666 SS1


characteristic: INSDC last update

text: live

text: Generic

text: Methylomicrobium buryatense 5G

text: Methylotuvimicrobium buryatense 5G

text: Generic sample from Methylomicrobium buryatense 5G


characteristic: INSDC secondary accession

text: live

text: Generic

text: Singulisphaera acidiphila DSM 18658

text: Singulisphaera acidiphila DSM 18658

text: DSM 18658

text: Generic sample from Singulisphaera acidiphila DSM 18658


text: live

characteristic: INSDC status

text: Generic

text: Halobacteroides halobius DSM 5150

text: Halobacteroides halobius DSM 5150

text: DSM 5150

text: Generic sample from Halobacteroides halobius DSM 5150


text: live

text: Generic

characteristic: NCBI submission model

text: Pseudomonas sp. FRC

text: Pseudomonas sp. FRC

text: FRC

text: Generic sample from Pseudomonas sp. FRC


characteristic: INSDC center name

text: live

text: Generic

text: Shewanella baltica OS625

text: Shewanella baltica OS625

text: Generic sample from Shewanella baltica OS625


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: NCBI submission package

text: Flexibacter litoralis DSM 6794

text: Bernardetia litoralis DSM 6794

text: DSM 6794

text: Generic sample from Flexibacter litoralis DSM 6794


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

characteristic: SRA accession

characteristic: cell line

text: Pc

characteristic: chip antibody

text: Drosophila melanogaster

text: DRSC-S2 cell line

text: S2-DRSC-ChIP-Pc replicate 1


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

text: Pc

text: Drosophila melanogaster

characteristic: organism

text: DRSC-S2 cell line

text: S2-DRSC-ChIP-Pc replicate 2


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

text: Ph

text: Drosophila melanogaster

text: DRSC-S2 cell line

text: S2-DRSC-ChIP-Ph replicate 1

characteristic: title


text: Paro Lab, D-BSSE, ETH Zürich

characteristic: INSDC first public

text: live

text: Generic

text: Ph

text: Drosophila melanogaster

text: DRSC-S2 cell line

text: S2-DRSC-ChIP-Ph replicate 2


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

text: Psc

text: Drosophila melanogaster

text: DRSC-S2 cell line

text: S2-DRSC-ChIP-Psc replicate 1


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

text: Psc

text: Drosophila melanogaster

text: DRSC-S2 cell line

text: S2-DRSC-ChIP-Psc replicate 2


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

text: Trx-C

text: Drosophila melanogaster

text: DRSC-S2 cell line

text: S2-DRSC-ChIP-Trx-C replicate 1


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

text: Trx-C

text: Drosophila melanogaster

text: DRSC-S2 cell line

text: S2-DRSC-ChIP-Trx-C replicate 2


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

text: Drosophila melanogaster

text: DRSC-S2 cell line

text: S2-DRSC-ChIP-Input replicate 1


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

text: Drosophila melanogaster

text: DRSC-S2 cell line

text: S2-DRSC-ChIP-Input replicate 2


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

text: Drosophila melanogaster

text: DRSC-S2 cell line


text: live

text: Generic

text: Methylobacter marinus A45

characteristic: description

text: Methylobacter marinus A45

characteristic: sample number

characteristic: strain

text: Generic sample from Methylobacter marinus A45


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

text: Drosophila melanogaster

text: DRSC-S2 cell line


text: Paro Lab, D-BSSE, ETH Zürich

text: live

text: Generic

text: Drosophila melanogaster

text: 0-16h Embryos

text: mixed-stage embryos

characteristic: tissue


characteristic: External Id

text: live

text: Generic

text: Barnesiella viscericola DSM 18177

text: Barnesiella viscericola DSM 18177

text: DSM 18177

text: Generic sample from Barnesiella viscericola DSM 18177


characteristic: INSDC last update

text: live

text: Generic

text: Treponema succinifaciens DSM 2489

text: Treponema succinifaciens DSM 2489

text: DSM 2489

text: Generic sample from Treponema succinifaciens DSM 2489


characteristic: INSDC secondary accession

text: live

text: Generic

text: Opitutaceae bacterium TAV2

text: Opitutaceae bacterium TAV3

text: Generic sample from Opitutaceae bacterium TAV3


text: Institute for Genome Sciences University of MD School of Medicine

text: live

characteristic: INSDC status

text: Generic

text: Escherichia coli DEC2A

text: Escherichia coli DEC2A


text: live

text: Generic

characteristic: NCBI submission model

text: Wallemia sebi CBS 633.66

text: Wallemia mellicola CBS 633.66

text: CBS 633.66

text: Generic sample from Wallemia sebi CBS 633.66


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

characteristic: batch

text: James Thompson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cells received from the James Thompson laboratory. Cells are from the H1 line.

characteristic: line

text: Embryonic Stem Cell

characteristic: lineage

text: mTeSER

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: James Thompson Laboratory

text: Cell Line

characteristic: description

text: Embryonic Stem Cell

text: mTeSER

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Between 20 and 40

text: male

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: James Thompson Laboratory

text: Cell Line

text: Human embryonic stem cells received from the James Thompson laboratory. Cells are from the H9 line.

text: Embryonic Stem Cell

text: mTeSER

text: genomic DNA

text: Homo sapiens

text: Between 30 and 50

text: female

text: Generic sample from Homo sapiens


text: J. Craig Venter Institute

characteristic: INSDC center name

text: live

text: MIGS.ba

text: CLC v. 3.10.47055

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: 454 FLX 8kb

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 5: Non-contiguous Finished194x;131

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Right arm

characteristic: misc_param: HMP body site

text: skin

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Dermacoccus sp. Ellin185

text: Dermacoccus sp. Ellin185

characteristic: project name

text: Reference Genome

text: not determined

text: 454, Illumina

characteristic: sequencing method

characteristic: sop

text: BEI HM-112

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Dermacoccus sp. Ellin185


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler 2.3

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: 454 Titanium Barcoded

characteristic: description

text: Level 6: Finished64x;52

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Lactobacillus iners SPIN 1401G

characteristic: organism

text: Lactobacillus iners SPIN 1401G

text: Reference Genome

text: not determined

text: BEI HM-699

text: Homo sapiens

text: SPIN 1401G

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus iners SPIN 1401G

characteristic: title


text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler v. 2.3

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: 454 Titanium Barcoded

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft52x;31

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Lactobacillus iners SPIN 2503V10-D

text: Lactobacillus iners SPIN 2503V10-D

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-704

text: Homo sapiens

text: SPIN 2503V10-D

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus iners SPIN 2503V10-D


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.3

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: 454 Titanium Barcoded

characteristic: description

text: Level 2: High-Quality Draft35x;92

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Lactobacillus iners LactinV 01V1-a

text: Lactobacillus iners LactinV 01V1-a

text: Reference Genome

text: not determined

text: BEI HM-700

text: Homo sapiens

characteristic: specific host

text: LactinV 01V1-a

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus iners LactinV 01V1-a


text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler v. 2.3

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: 454 Titanium Barcoded

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft47x;67

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Lactobacillus iners LactinV 03V1-b

characteristic: organism

text: Lactobacillus iners LactinV 03V1-b

characteristic: project name

text: Reference Genome

text: not determined

text: BEI HM-701

text: Homo sapiens

text: LactinV 03V1-b

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus iners LactinV 03V1-b

characteristic: title


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.3

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: 454 Titanium Barcoded

characteristic: description

text: Level 2: High-Quality Draft50x;35

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Lactobacillus iners LactinV 09V1-c

text: Lactobacillus iners LactinV 09V1-c

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-702

text: Homo sapiens

text: LactinV 09V1-c

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus iners LactinV 09V1-c


text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler v. 2.3

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: 454 Titanium Barcoded

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft80.93x;37

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Lactobacillus iners LEAF 2053A-b

characteristic: organism

text: Lactobacillus iners LEAF 2053A-b

text: Reference Genome

text: not determined

text: BEI HM-705

text: Homo sapiens

characteristic: specific host

text: LEAF 2053A-b

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus iners LEAF 2053A-b


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.3

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: 454 Titanium Barcoded

characteristic: description

text: Level 2: High-Quality Draft70x;27

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Lactobacillus iners LactinV 11V1-d

text: Lactobacillus iners LactinV 11V1-d

characteristic: project name

text: Reference Genome

text: not determined

text: BEI HM-703

text: Homo sapiens

text: LactinV 11V1-d

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus iners LactinV 11V1-d

characteristic: title


text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler v. 2.3

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: 454 Titanium Barcoded

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft74.65x;28

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Lactobacillus iners LEAF 2052A-d

characteristic: organism

text: Lactobacillus iners LEAF 2052A-d

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-706

text: Homo sapiens

text: LEAF 2052A-d

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus iners LEAF 2052A-d


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.3

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: 454 Titanium Barcoded

characteristic: description

text: Level 2: High-Quality Draft65.8x;24

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Lactobacillus iners LEAF 2062A-h1

text: Lactobacillus iners LEAF 2062A-h1

text: Reference Genome

text: not determined

text: BEI HM-707

text: Homo sapiens

characteristic: specific host

text: LEAF 2062A-h1

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from HMP164 Lactobacillus iners LEAF 2062A-h1


text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler v. 2.3

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: 454 Titanium Barcoded

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft68.39x;25

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Lactobacillus iners LEAF 3008A-a

characteristic: organism

text: Lactobacillus iners LEAF 3008A-a

characteristic: project name

text: Reference Genome

text: not determined

text: BEI HM-708

text: Homo sapiens

text: LEAF 3008A-a

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus iners LEAF 3008A-a

characteristic: title


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CLC v. 3.10.47055

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: 454 FLX 8kb

characteristic: description

text: Level 2: High-Quality Draft244x;35

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Bifidobacterium dentium JCVIHMP022

text: Bifidobacterium dentium JCVIHMP022

text: Reference Genome

text: not determined

text: 454, Illumina

characteristic: sequencing method

characteristic: sop

text: ATCC 27679

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Bifidobacterium dentium JCVIHMP022


text: Department of Molecular Biology (274), Radboud University

text: live

text: Generic

text: anti GR

characteristic: antibody

characteristic: antibody catalog

text: Diagenode

characteristic: antibody manufacturer

text: HeLa B2

characteristic: cell line

text: immortal cervical cancer cell

characteristic: cell type

text: WT

characteristic: genotype/variation

text: Homo sapiens

characteristic: organism

text: HeLa B2 cells

text: DMSO

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: anti GR

text: Diagenode

text: HeLa B2

text: immortal cervical cancer cell

text: WT

text: Homo sapiens

text: HeLa B2 cells

characteristic: title

text: TA


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: anti GR

text: Diagenode

text: HeLa B2

text: immortal cervical cancer cell

text: WT

text: Homo sapiens

text: HeLa B2 cells

text: TNFα


text: live

text: Generic

text: anti GR

characteristic: antibody

characteristic: antibody catalog

text: Diagenode

text: HeLa B2

text: immortal cervical cancer cell

text: WT

text: Homo sapiens

text: HeLa B2 cells

text: TA+TNFα


text: live

text: Generic

text: anti GR

text: Diagenode

characteristic: antibody manufacturer

text: HeLa B2

characteristic: cell line

text: immortal cervical cancer cell

text: GRKD

text: Homo sapiens

text: HeLa B2 cells

text: DMSO


text: live

text: Generic

text: anti GR

text: Diagenode

text: HeLa B2

text: immortal cervical cancer cell

characteristic: cell type

text: GRKD

characteristic: genotype/variation

text: Homo sapiens

text: HeLa B2 cells

text: TA+TNFα


text: live

text: Generic

text: anti p65

text: Santa Cruz Biotechnologies

text: HeLa B2

text: immortal cervical cancer cell

text: GRKD

text: Homo sapiens

characteristic: organism

text: HeLa B2 cells

text: DMSO

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: anti p65

text: Santa Cruz Biotechnologies

text: HeLa B2

text: immortal cervical cancer cell

text: GRKD

text: Homo sapiens

text: HeLa B2 cells

text: TA+TNFα


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: anti p65

text: Santa Cruz Biotechnologies

text: HeLa B2

text: immortal cervical cancer cell

text: WT

text: Homo sapiens

text: HeLa B2 cells

text: DMSO


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: anti p65

text: Santa Cruz Biotechnologies

text: HeLa B2

text: immortal cervical cancer cell

text: WT

text: Homo sapiens

text: HeLa B2 cells

text: TA


text: live

text: Generic

characteristic: NCBI submission model

text: anti p65

text: Santa Cruz Biotechnologies

text: HeLa B2

text: immortal cervical cancer cell

text: WT

text: Homo sapiens

text: HeLa B2 cells

characteristic: title

text: TNFα


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: anti p65

text: Santa Cruz Biotechnologies

text: HeLa B2

text: immortal cervical cancer cell

text: WT

text: Homo sapiens

text: HeLa B2 cells

text: TA+TNFα


text: live

text: Generic

text: anti p65

characteristic: antibody

characteristic: antibody catalog

text: Santa Cruz Biotechnologies

text: HeLa B2

text: immortal cervical cancer cell

text: Homo sapiens

text: HeLa B2 cells

text: DMSO


text: live

text: Generic

text: anti p65

text: Santa Cruz Biotechnologies

characteristic: antibody manufacturer

text: HeLa B2

characteristic: cell line

text: immortal cervical cancer cell

text: Homo sapiens

text: HeLa B2 cells

text: TA+TNFα


text: live

text: Generic

text: anti GR

text: Diagenode

text: HeLa B2

text: immortal cervical cancer cell

characteristic: cell type

characteristic: genotype/variation

text: Homo sapiens

text: HeLa B2 cells

text: DMSO


text: live

text: Generic

text: anti GR

text: Diagenode

text: HeLa B2

text: immortal cervical cancer cell

text: Homo sapiens

characteristic: organism

text: HeLa B2 cells

text: TA+TNFα

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: anti RNAPII

text: Diagenode

text: HeLa B2

text: immortal cervical cancer cell

text: WT

text: Homo sapiens

text: HeLa B2 cells

text: DMSO


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: anti RNAPII

text: Diagenode

text: HeLa B2

text: immortal cervical cancer cell

text: WT

text: Homo sapiens

text: HeLa B2 cells

text: TA


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: anti RNAPII

text: Diagenode

text: HeLa B2

text: immortal cervical cancer cell

text: WT

text: Homo sapiens

text: HeLa B2 cells

text: TNFα


text: live

text: Generic

characteristic: NCBI submission model

text: anti RNAPII

text: Diagenode

text: HeLa B2

text: immortal cervical cancer cell

text: WT

text: Homo sapiens

text: HeLa B2 cells

characteristic: title

text: TA+TNFα


Nagao et al 2010 fly testes AGO3

text: Computational Biology Research Center, AIST

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Immunoprecipitation was performed using anti-Aub and anti-AGO3 (polyclonal) antibodies immobilized on Dynabeads Protein G (Invitrogen). Immunoprecipitation buffer contained 50 mM Tris-HCl (pH8.0), 150 mM NaCl, 1 mM dithiothreitol (DTT), 0.1% SDS, 1% Triton-X, 0.5% sodium deoxycholate, 2μg/ml pepstatin, 2μg/ml leupeptin, and 0.5% aprotinin. Approximately 1500 testes were used per immunoprecipitation. The reaction mixtures were rocked at 4*C for 1 h, the bead fractions were washed five times with binding buffer and the protein pools bound to the beads were eluted with SDS-PAGE sample buffer. After heating to 95*C for 5 min, protein samples were run on SDS-PAGE gels and processed for western blot analysis.

characteristic: description

text: Drosophila melanogaster

text: AGO3-associated small RNAs extracted from fly testes


Nagao et al 2010 fly testes Aub

text: live

text: Generic

text: Drosophila melanogaster

text: Aub-associated small RNAs extracted from fly testes


text: Center for Comparative Genomics and Bioinformatics

text: live

text: Generic

text: Odocoileus hemionus


text: NHGRI

text: live

text: Generic

text: Tumor tissue, Sample 64

text: Homo sapiens


text: NHGRI

text: live

text: Generic

text: Tumor tissue, Sample 13

text: Homo sapiens


text: NHGRI

text: live

text: Generic

text: Tumor tissue, Sample 16

text: Homo sapiens


text: NHGRI

text: live

text: Generic

text: Tumor tissue, Sample 17

text: Homo sapiens


text: NHGRI

text: live

text: Generic

text: Tumor tissue, Sample 19

text: Homo sapiens


text: NHGRI

text: live

text: Generic

text: Tumor tissue, Sample 1

text: Homo sapiens


text: NHGRI

text: live

text: Generic

text: Tumor tissue, Sample 34

text: Homo sapiens


text: NHGRI

text: live

text: Generic

text: Tumor tissue, Sample 36

text: Homo sapiens


text: NHGRI

text: live

text: Generic

text: Tumor tissue, Sample 7

text: Homo sapiens


text: NHGRI

text: live

text: Generic

text: Tumor tissue, Sample 85

text: Homo sapiens


text: NHGRI

text: live

text: Generic

text: Tumor tissue, Sample 95

text: Homo sapiens


text: Center for Comparative Microbial Ecology

text: live

text: Generic

text: infant gut microbiome default

text: human gut metagenome

text: infant gut microbiome default


MD

text: live

text: Generic

text: Odocoileus hemionus

text: MD


text: ENCODE DCC

text: live

text: Generic

text: Coriell

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

characteristic: biorep

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

characteristic: labexpid

text: LID20902,LID20899,crg-2,LID20899,LID20902

text: Produced by Hannon Lab,iIDR

characteristic: labversion

characteristic: line

text: Whole cell

characteristic: localization description

text: Homo sapiens

text: TAP-Only

characteristic: protocol

text: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.

characteristic: protocol description

characteristic: readtype

text: Single 36 nt reads

characteristic: readtype description

characteristic: replicate

text: shortTotal

characteristic: rnaextract

text: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation

characteristic: rnaextract description

text: CSHL_RnaSeq_GM12878_cell_TAP-Only_shortTotal


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Coriell

characteristic: biomaterial provider

text: RnaSeq

text: Sequencing analysis of RNA expression

text: LID20901,LID20904,LID20901,crg-4,LID20904

text: Produced by Hannon Lab,iIDR

text: The fluid between the cells outer membrane and the nucleus

text: Homo sapiens

characteristic: organism

text: TAP-Only

text: Single 36 nt reads

text: shortTotal

text: CSHL_RnaSeq_GM12878_cytosol_TAP-Only_shortTotal

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: ATCC

characteristic: biorep

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: LID8928,crg-37,LID18558,LID8928,LID18558

characteristic: labexpid

text: Produced by Hannon Lab,iIDR

characteristic: labversion

text: nucleolus

characteristic: localization

text: The part of the nucleus where ribosomal RNA is actively transcribed

characteristic: localization description

text: Homo sapiens

text: TAP-Only

characteristic: protocol

characteristic: protocol description

characteristic: readtype

text: Single 36 nt reads

text: shortTotal

text: CSHL_RnaSeq_K562_nucleolus_TAP-Only_shortTotal


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: RnaSeq

text: Sequencing analysis of RNA expression

text: LID10567,LID10568,LID10568,LID10567,crg-31

text: Produced by Hannon Lab,iIDR

characteristic: line

text: cell

text: Whole cell

text: Homo sapiens

text: TAP-Only

text: Single 36 nt reads

characteristic: readtype description

characteristic: replicate

text: shortTotal

characteristic: rnaextract

characteristic: rnaextract description

text: CSHL_RnaSeq_K562_cell_TAP-Only_shortTotal


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: LID8930,LID18560,LID8930,LID18560,crg-32

characteristic: labexpid

text: Produced by Hannon Lab,iIDR

characteristic: labversion

text: chromatin

characteristic: localization

text: Nuclear DNA and associated proteins

text: Homo sapiens

characteristic: organism

text: TAP-Only

text: Single 36 nt reads

text: shortTotal

text: CSHL_RnaSeq_K562_chromatin_TAP-Only_shortTotal

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Coriell

characteristic: cell description

text: RnaSeq

text: Sequencing analysis of RNA expression

text: LID20903,LID20900,LID20903,LID20900,crg-6

text: Produced by Hannon Lab,iIDR

text: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA

characteristic: localization description

text: Homo sapiens

text: TAP-Only

characteristic: protocol

characteristic: protocol description

characteristic: readtype

text: Single 36 nt reads

text: shortTotal

text: CSHL_RnaSeq_GM12878_nucleus_TAP-Only_shortTotal


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: LID8929,LID8929,LID18559,crg-39,LID18559

text: Produced by Hannon Lab,iIDR

text: nucleoplasm

text: That part of the nuclear content other than the chromosomes or the nucleolus

text: Homo sapiens

text: TAP-Only

text: Single 36 nt reads

characteristic: readtype description

characteristic: replicate

text: shortTotal

characteristic: rnaextract

characteristic: rnaextract description

text: CSHL_RnaSeq_K562_nucleoplasm_TAP-Only_shortTotal


stickleback high ridge lake 141

characteristic: External Id

text: University of Oregon

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Stickleback individual used in SNP discovery experiment

characteristic: description

text: Gasterosteus aculeatus

characteristic: organism

text: stickleback high ridge lake 141

characteristic: title