text: live

text: Generic

text: Mus musculus

text: LymphomaTHYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 56)

text: Sleeping beauty


status: PUBLIC

characteristic: External Id

text: Jonkers lab, Molecular Biology, Netherlands Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mus musculus

characteristic: organism

text: Lymphoma THYMUS

tag: attribute

text: mixed C57Bl6/129S5SvEvBrd

characteristic: strain

text: Sleeping Beauty induced lymphoma (NlaIII sample 57)

characteristic: title

text: Sleeping beauty

characteristic: transposon


text: live

text: Generic

text: Mus musculus

text: Lymphoma THYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 58)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: Lymphoma SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 59)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: Lymphoma THYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 60)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMASPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 61)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 62)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 63)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 64)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 65)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 66)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 67)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMASPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 68)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 69)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA/LEUKAEMIA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 70)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 71)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMATHYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 72)

text: Sleeping beauty


text: Jonkers lab, Molecular Biology, Netherlands Cancer Institute

text: live

text: Generic

text: Mus musculus

text: LYMPHOMATHYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 73)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 74)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIASPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 75)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 76)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA THYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 77)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 78)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 79)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 80)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 81)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMASPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 82)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 83)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 84)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIASPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 85)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIASPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 86)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIASPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 87)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMATHYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 88)

text: Sleeping beauty


text: Jonkers lab, Molecular Biology, Netherlands Cancer Institute

text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 89)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMALIVER

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 90)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 91)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 92)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMALUMP

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 93)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 94)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 95)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA THYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 96)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMASPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 97)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 98)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA THYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 99)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIASPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 100)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIA LIVER

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 101)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 102)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIASPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 103)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 104)

text: Sleeping beauty


text: Jonkers lab, Molecular Biology, Netherlands Cancer Institute

text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 105)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 106)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA THYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 107)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA THYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 108)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 109)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 110)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 111)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 112)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 113)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 114)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA THYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 115)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA LYMPH NODE

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 116)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 117)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA LIVER

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 118)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 119)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA THYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 120)

text: Sleeping beauty


text: Jonkers lab, Molecular Biology, Netherlands Cancer Institute

text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 121)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA THYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 122)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 123)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 124)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA LIVER

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 125)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LYMPHOMA THYMUS

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 126)

text: Sleeping beauty


text: live

text: Generic

text: Mus musculus

text: LEUKAEMIA SPLEEN

text: mixed C57Bl6/129S5SvEvBrd

text: Sleeping Beauty induced lymphoma (NlaIII sample 127)

text: Sleeping beauty


text: University of Oklahoma Norman Campus, Advanced Center for Genome Technology

text: live

text: Generic

text: Avena sativa Genotype G5-7 ten-day old whole seedling transcriptome

characteristic: description

text: Avena sativa

text: A. sativa genotype G5-7 transcriptome


text: Pritchard's Lab, Genetics, Stanford University

text: live

text: Generic

characteristic: cell line

text: control

characteristic: knockdown

text: Homo sapiens

text: K562 cells

text: K562 control RNA-seq


text: Jin's Lab, Biomedical Informatics, The Ohio State University

text: live

text: Generic

text: Homo sapiens

text: K562 cells

text: K562 siGATA1 RNA-seq


text: live

text: Generic

text: Homo sapiens

text: K562 cells

text: K562 siGATA2 RNA-seq


text: KIT - Karlsruhe Institute of Technology

text: live

text: Generic

text: Liver

characteristic: organ

text: Anguilla japonica

text: Anguilla japonica liver

text: TOPO

characteristic: vector


characteristic: External Id

text: Karlsruhe Institute of Technology (KIT)

characteristic: INSDC center name

text: live

text: Generic

text: Different cDNA libraries combined in one (Glomus DB) made of germinated spores (CACE and CCHU) and extraradical mycelium (EXTA, EXTB, EXTC) of Glomus sp. DAOM 197198

text: Rhizophagus irregularis DAOM 181602=DAOM 197198

text: DAOM 197198

text: Glomus DB Library CACE,CCHU,EXTA,EXTB,EXTC


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Avena sativa Genotype TAM-O-301 ten-day old whole seeding transcriptome

text: Avena sativa

text: A. sativa genotype TAM-O-301 transcriptome


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Avena sativa Genotype OGLE ten-day old whole seedling transcriptome

text: Avena sativa

text: A. sativa genotype OGLE transcriptome


name: Pachycladon fastigiatum mRNA-seq paired-end lane 2

text: Massey University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: P. fastigiatum accessions were grown from seed in a greenhouse at Landcare Research Lincoln. Seeds originated from plants collected at Ohau ski field. Tissue samples from young and old leafs as well as roots were harvested and shock frozen in liquid nitrogen.

text: Pachycladon fastigiatum

text: Pachycladon fastigiatum from Serpentine Creek mRNA-seq paired-end lane 4 (roots, young leaves, old leaves)


name: Pachycladon fastigiatum mRNA-seq single-end lane 1

text: Massey University

text: live

text: Generic

characteristic: SRA accession

text: Seeds of P. fastigiatum were germinated according to Weigel and Glazebrook (2002) and young plants were transferred to potting mix (Orderings Nurseries Potting Mix). Leaves of three biological replicates were harvested and shock frozen in liquid nitrogen after cultivating the plants for 5 months in growth cabinets (Contherm Phytotron Climate Simulator) using the following parameters: 20* C, 50% air humidity, 180 uE PAR (photosynthetically active radiation), and 16h day light.

text: Pachycladon fastigiatum

characteristic: organism

text: Pachycladon fastigiatum mRNA-seq single-end replicate 1 (leaves)


name: Pachycladon fastigiatum mRNA-seq single-end lane 2

text: Massey University

text: live

text: Generic

text: Pachycladon fastigiatum

text: Pachycladon fastigiatum mRNA-seq single-end replicate 2 (leaves)

characteristic: title


name: Pachycladon fastigiatum mRNA-seq single-end lane 3

text: Massey University

text: live

text: Generic

text: Pachycladon fastigiatum

text: Pachycladon fastigiatum mRNA-seq single-end replicate 3


Suaeda liaotungensis transcriptome

text: Liao Ning Normal University

text: live

text: Generic

text: Suaeda liaotungensis

text: Suaeda liaotungensis transcriptome


110 samples

text: BGI-Shenzhen

text: live

text: Generic

text: 107 samples were used in this study frorm 7 clinical cases, one with hereditary spastic paraplegia with thin corpus callosum (HSP-TCC, MIM# 604360), one with X-linked ichthyosis (XLI, MIM#308100), one with Marfan syndrome (MFS, MIM# 154700), one with Wilson disease (MIM# 277900), one with Duchenne muscular dystrophy (DMD, MIM# 310200), two patients with ß-thalassemias (MIM# 603902) (Table 1) and 100 normal adult human blood specimens as controls. In addition, 3 samples derived from YH DNA (C1), one additional normal adult human (C2) and the mother (C3) of the DMD proband (P7) (Table 1). Written informed consent was obtained from all the participants, who provided their 5 ml blood for the study. This project and the protocols for the investigation involving human tissues were approved by the ethics committee of the Beijing Genomics Institute at Shenzhen.

text: Homo sapiens

text: Patients and controls


Bombyx mori cell line infection

text: Zhejiang University Insect Institute

text: live

text: Generic

text: Bombyx mori

text: transcriptome sequences and infection time courses


name: Norway spruce trees with different susceptibility to H. annosum sl infection

text: Swedish University of Agricultural Sciences

text: live

text: Generic

text: In this study we examined transcriptional response, using 454-sequencing, and chemical profiles in bark of Norway spruce trees with different susceptibility to Heterobasidion annosum s.l. infection. The aim was to find associations between the transcriptome and chemical profiles to the level of susceptibility to Heterobasidion spp. in Norway spruce genotypes.

text: Picea abies

text: 454-sequencing and chemical profiles in the bark of Norway spruce trees with differential susceptibility to Heterobasidion annosum s.l. infection.


S. maximus L. transcriptome

text: University of Barcelona

text: live

text: Generic

text: Several turbot tissues stimulated with two different viruses (VHSV and nodavirus), plasmid constructs used as DNA vaccines and polyriboinosinic polyribocytidylic acid (poly I:C). Fifty-two turbots (average weight 36 g) were obtained from a commercial fish farm in Galicia (NW Spain). Animals were acclimated to laboratory conditions for 2 weeks, maintained at 18°C and fed daily with a commercial diet. The fish were divided into one batch of 4 individuals and four batches of 12 individuals each one. Turbots from the batch with 4 individuals were challenged intraperitoneally with 100 µl of a Nodavirus (107 TCID50/fish) suspension (strain AH95-NorA) (Grotmol et al., 2000). The first batch of 12 individuals was challenged intraperitoneally with 100 µl of VHSV (4 x 109 TCID50/fish) suspension (strain UK-860/94) (Ross et al., 1994). The second batch was injected with pMCV 1.4-coiled (Ready-Vector, Madrid, Spain) (2 µg/fish). pMCV 1.4 is an expression vector typically used for the construction of DNA vaccines and pMCV 1.4-coiled served as a double-stranded DNA viral stimulus. The third batch was challenged with pMCV 1.4-G860 (2 µg/fish), which codes the G glycoprotein from VHSV UK 860/94 strain (Accession No. AY546628) and was used as a DNA vaccine. The fourth batch was stimulated with poly I:C (0.1 mg/fish) (SIGMA) mimicking a viral infection. Viral suspensions were prepared using minimal essential medium (MEM, GIBCO) supplemented with 2% fetal bovine serum (FBS), penicillin (100 IU/ml) (Invitrogen), streptomycin (100 µg/ml) (Invitrogen). Poly I:C and plasmids constructs were inoculated using 1x Phosphate Buffered Saline (PBS 1x). Turbot larvae at early developmental stages (until 1 month) were also taken. n order to obtain mRNA representative of both innate and adaptative immune systems representing the dynamics of the immune response, gill, liver, spleen and head kidney tissues were removed from 2 individuals for each sampling point (1 h, 6 h, 24 h, 3 days, 7 days and 14 days post-inoculation) for the batches with 12 individuals. For the batch infected with nodavirus, the brain, as target organ, was removed from 2 individuals at 24 h and 3 days. Turbot larvae were pooled in one sample. For each sampling time and treatment, equal amounts of the same tissue from the two fish were pooled and immediately stored at -80 ºC in 500 µl of TRIzol® (Invitrogen) until RNA isolation. Total RNA was extracted from pooled tissues using TRIzol® (Invitrogen) in accordance with instructions provided by the manufacturer in combination with the RNeasy mini kit (Qiagen) for RNA purification after DNase treatment (RNase-free DNase set, Qiagen). Quantity of total RNA purified from each pool was determined using the spectrophotometer Nanodrop ND-100. RNA for each organ and sampling point was pooled mixing 1 µg of RNA for each stimuli. The final concentration was adjusted to 1 µg/µl. RNA quality was assessed by electrophoresis on a denaturing agarose gel in MOPS buffer in order to visualize the 18S and 28S ribosomal RNA bands. RNA integrity was furthermore investigated using the Bioanalyzer 2100 (Agilent Technologies). RNA extracted from stimulated/infected S. maximus was used as the source of starting material for cDNA synthesis (Evrogen MINT cDNA synthesis kit) and the production of normalized cDNA (Evrogen Trimmer kit) intended for 454-pyrosequencing. RNA was normalized, processed and sequencied by the Unitat de Genòmica (CCiT-UB, Barcelona, Spain) with a 454 GS FLX sequencer (454 Life Sciences) using the Titanium chemistry.

text: Scophthalmus maximus

text: High-throughput sequence analysis of turbot (Scophthalmus maximus L.) transcriptome using 454-pyrosequencing for discovery genes involved in antiviral immune response.


text: IGIB

text: live

text: Generic

text: Japanese encephalitis virus

text: De novo identification of viral pathogens from cell culture hologenomes


U118 glioblastoma cell-line

text: Tel Aviv University

text: live

text: Generic

text: We have used Illumina's HiSeq2000 machine to perform next-generation sequencing of miRNAs from control U118 glioblastoma cell-line and compared the results to ADAR2 over-expression.

text: Homo sapiens

text: human brain-originated U118 glioblastoma cell-line


text: Centre for Geogenetics, Natural History Museum of Denmark

text: live

text: Generic

text: CGG10023 has been preserved in the permafrost (Taymyr peninsula) and is associated with a finite radiocarbone date (UBA-16479 13,389*52BP). TP1 is the first extraction for this sample

text: Equus caballus

text: Bone TP1 from CGG10023


text: live

text: Generic

text: CGG10023 has been preserved in the permafrost (Taymyr peninsula) and is associated with a finite radiocarbone date (UBA-16479 13,389*52BP). TP1RE is the second extraction of the undigested pellets of TP1

text: Equus caballus

text: Bone TP1RE from CGG10023


text: live

text: Generic

text: CGG10023 has been preserved in the permafrost (Taymyr peninsula) and is associated with a finite radiocarbone date (UBA-16479 13,389*52BP). TP2RE is the second extraction of the undigested pellets of TP2

text: Equus caballus

text: TP2RE from CGG10023


text: live

text: Generic

text: CGG10023 has been preserved in the permafrost (Taymyr peninsula) and is associated with a finite radiocarbone date (UBA-16479 13,389*52BP). TP2 is the first extraction for this sample

text: Equus caballus

text: Bone TP2 from CGG10023


Bombyx mori infection transcriptome

text: Zhejiang University Insect Institute

text: live

text: Generic

text: Bombyx mori

text: transcriptome sequences analysis of Bombyx mori


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Homo sapiens

text: Tumor vs. Matched-Normal

characteristic: study design

text: Acute Lymphoblastic Leukemia

characteristic: study disease

text: Whole Genome Sequencing of Infant ALL

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from a human participant in the dbGaP study Whole Genome Sequencing of Infant ALL


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: RNA

text: Pelvis

characteristic: body site

text: Rhabdomyosarcoma

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor RNA sample from Pelvis of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Pelvis

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

characteristic: organism

text: male

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor DNA sample from Pelvis of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Bone Marrow

text: Bone Marrow

text: No

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study design

text: Rhabdomyosarcoma

characteristic: study disease

text: Sequencing of Rhabdomyosarcoma

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Bone Marrow of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RNA

text: Uterus

characteristic: body site

text: Rhabdomyosarcoma

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor RNA sample from Uterus of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Uterus

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor DNA sample from Uterus of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: Peripheral Blood

text: Peripheral Blood

text: No

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

characteristic: study design

text: Rhabdomyosarcoma

characteristic: study disease

text: Sequencing of Rhabdomyosarcoma

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Peripheral Blood of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Right eye orbit

characteristic: body site

text: Rhabdomyosarcoma

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor DNA sample from Right eye orbit of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Right testis

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

characteristic: organism

text: male

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor RNA sample from Right testis of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Right testis

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study design

text: Rhabdomyosarcoma

characteristic: study disease

text: Sequencing of Rhabdomyosarcoma

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Rhabdomyosarcoma tumor DNA sample from Right testis of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Peripheral Blood

characteristic: body site

text: Peripheral Blood

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Non-tumor DNA sample from Peripheral Blood of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Neck

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor RNA sample from Neck of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: Neck

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

characteristic: study design

text: Rhabdomyosarcoma

characteristic: study disease

text: Sequencing of Rhabdomyosarcoma

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Rhabdomyosarcoma tumor DNA sample from Neck of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RNA

text: Left Ear

characteristic: body site

text: Rhabdomyosarcoma

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor RNA sample from Left Ear of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Left Ear

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor DNA sample from Left Ear of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: RNA

text: Inguinal LN

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study design

text: Rhabdomyosarcoma

characteristic: study disease

text: Sequencing of Rhabdomyosarcoma

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Rhabdomyosarcoma tumor RNA sample from Inguinal LN of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Inguinal LN

characteristic: body site

text: Rhabdomyosarcoma

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor DNA sample from Inguinal LN of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Perirectal region

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor RNA sample from Perirectal region of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: Perirectal region

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

characteristic: study design

text: Rhabdomyosarcoma

characteristic: study disease

text: Sequencing of Rhabdomyosarcoma

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Rhabdomyosarcoma tumor DNA sample from Perirectal region of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RNA

text: Iliac LN

characteristic: body site

text: Rhabdomyosarcoma

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor RNA sample from Iliac LN of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Iliac LN

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor DNA sample from Iliac LN of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: RNA

text: Right forearm

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study design

text: Rhabdomyosarcoma

characteristic: study disease

text: Sequencing of Rhabdomyosarcoma

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Rhabdomyosarcoma tumor RNA sample from Right forearm of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Right forearm

characteristic: body site

text: Rhabdomyosarcoma

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor DNA sample from Right forearm of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Right Neck

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

characteristic: organism

text: male

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor RNA sample from Right Neck of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: Right Neck

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study design

text: Rhabdomyosarcoma

characteristic: study disease

text: Sequencing of Rhabdomyosarcoma

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Rhabdomyosarcoma tumor DNA sample from Right Neck of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Bone Marrow

characteristic: body site

text: Bone Marrow

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Non-tumor DNA sample from Bone Marrow of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Prostate

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

characteristic: organism

text: male

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor RNA sample from Prostate of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Prostate

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study design

text: Rhabdomyosarcoma

characteristic: study disease

text: Sequencing of Rhabdomyosarcoma

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Rhabdomyosarcoma tumor DNA sample from Prostate of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Peripheral Blood

characteristic: body site

text: Peripheral Blood

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Non-tumor DNA sample from Peripheral Blood of a human male participant in the dbGaP study Sequencing of Rhabdomyosarcoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Perineum

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Rhabdomyosarcoma tumor RNA sample from Perineum of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: Perineum

text: Rhabdomyosarcoma

text: Yes

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

characteristic: study design

text: Rhabdomyosarcoma

characteristic: study disease

text: Sequencing of Rhabdomyosarcoma

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Rhabdomyosarcoma tumor DNA sample from Perineum of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Peripheral Blood

characteristic: body site

text: Peripheral Blood

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Tumor vs. Matched-Normal

text: Rhabdomyosarcoma

text: Sequencing of Rhabdomyosarcoma

text: Yes

text: Non-tumor DNA sample from Peripheral Blood of a human female participant in the dbGaP study Sequencing of Rhabdomyosarcoma


text: University of Oklahoma Norman Campus, Advanced Center for Genome Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Gossypium arboreum A2-87 three week old seedlings inoculated with 50,000 reniform nematodes and roots were collected 26 days post inoculation for transcriptome analysis

characteristic: description

text: Gossypium arboreum

characteristic: organism

text: G. arboreum 3-week old seedling and roots 26 days post reniform nematodes

characteristic: title


Parent 2F-1-YFP2

text: Boston College

text: live

text: Generic

text: Toxoplasma gondii

text: Parent 2F-1-YFP2


Mutant F-P2

text: Boston College

text: live

text: Generic

text: Toxoplasma gondii

text: Mutant F-P2


text: live

text: Generic

text: Gossypium arboreum A2-87 seven week old plants, roots were collected for transcriptome analysis (control)

text: Gossypium arboreum

text: G. arboreum 3-week old and roots (control)


text: live

text: Generic

text: Gossypium arboreum A2-87 three week old seedlings inoculated with 50,000 reniform nematodes and roots were collected 15 days post inoculation for transcriptome analysis

text: Gossypium arboreum

text: G. arboreum 3-week old seedling and roots 15 days post 50,000 reniform nematodes


text: live

text: Generic

text: Gossypium barbadense TX 1347 three week old seedlings inoculated with 50,000 reniform nematodes and roots were collected 26 days post inoculation for transcriptome analysis

text: Gossypium barbadense

text: G. barbadense TX1347 3-week old seedling and roots 26 days post 50,000 reniform nematodes


text: live

text: Generic

text: Gossypium barbadense TX 1347 seven week old plants, roots were collected for transcriptome analysis (control)

text: Gossypium barbadense

text: G. barbadense TX1347 7-week old and roots (control)


text: live

text: Generic

text: Gossypium barbadense TX 1348 seven week old plants, roots were collected for transcriptome analysis (control)

text: Gossypium barbadense

text: G. barbadense TX1348 7-week old and roots (control)


text: live

text: Generic

text: Gossypium barbadense three week old seedlings inoculated with 50,000 reniform nematodes and roots were collected 15 days post inoculation for transcriptome analysis

text: Gossypium barbadense

text: G. barbadense TX1348 3-week old seedling and roots 15 days post 50,000 reniform nematodes


text: live

text: Generic

text: Gossypium barbadense TX 1348 three week old seedlings inoculated with 50,000 reniform nematodes and roots were collected 26 days post inoculation for transcriptome analysis

text: Gossypium barbadense

text: G. barbadense TX1348 3-week old seedling and roots 26 days post 50,000 reniform nematodes


Human primary liposarcoma DLPS1

text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Homo sapiens


Human recurrent liposarcoma DLPS2

text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Homo sapiens


name: Human matched normal adipose tissue NLPS1

text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Homo sapiens


name: Human matched normal adipose tissue NLPS2

text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Homo sapiens


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Vibrio cholerae HE-40

characteristic: strain

text: Vibrio cholerae HE-40


characteristic: External Id

text: CIT

text: live

text: Generic

text: Homo sapiens

text: BirA in HBL1


text: CIT

characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: SPIB Wilde type in HBL1


characteristic: INSDC secondary accession

text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae GA05578

text: Streptococcus pneumoniae GA05578

type: AMR curated data - CABBAGE

value: clindamycin

value: susceptible

value: Streptococcus pneumoniae

value: quinupristin-dalfopristin

value: vancomycin

value: erythromycin

value: resistant

value: trimethoprim-sulfamethoxazole

value: meropenem

value: penicillin

value: cefotaxime

value: intermediate

value: tetracycline

value: chloramphenicol

value: cefaclor

value: ofloxacin

value: rifampin


text: live

characteristic: INSDC status

text: USA

text: Generic

characteristic: NCBI submission model

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA02506

text: Streptococcus pneumoniae GA02506

value: ciprofloxacin


FM 1

text: University of Oklahoma Norman Campus, Advanced Center for Genome Technology

text: live

text: Generic

text: Gossypium hursutum FiberMax 958 six week old plants, roots were collected for transcriptome analysis (control)

text: Gossypium hirsutum

text: G. hursutum FiberMax 958 6-week old plants and roots (control)


FM 2

text: live

text: Generic

text: Gossypium hursutum FiberMax 958 three week old seedlings inoculated with 50,000 reniform nematodes and roots were collected 12 days post inoculation for transcriptome analysis

text: Gossypium hirsutum

text: G. hursutum FiberMax 958 3-week old seedling and roots 12 days post 50,000 reniform nematodes


text: live

text: Generic

text: Gossypium hursutum FiberMax 958 three week old seedlings inoculated with 100,000 reniform nematodes and roots were collected 12 days post inoculation for transcriptome analysis

text: Gossypium hirsutum

text: G. hursutum FiberMax 958 3-week old seedling and roots 12 days post 100,000 reniform nematodes


text: live

text: Generic

text: Gossypium hirsutum Lon-Ren six week old plants, roots were collected for transcriptome analysis (control)

text: Gossypium hirsutum

text: G. hursutum Lon-Ren 6-week old plants and roots (control)


text: live

text: Generic

text: Gossypium hirsutum

text: G. hursutum Lon-Ren 3-week old seedling and roots 12 days post 50,000 reniform nematodes


text: live

text: Generic

text: Gossypium hirsutum Lon-Ren three week old seedlings inoculated with 100,000 reniform nematodes and roots were collected 12 days post inoculation for transcriptome analysis

text: Gossypium hirsutum

text: G. hursutum Lon-Ren 3-week old seedling and roots 12 days post 100,000 reniform nematodes


text: live

text: Generic

text: Gossypium hirsutum GOLIB three week old seedlings inoculated with 10,000 reniform nematodes and roots were collected 26 days post inoculation for transcriptome analysis

text: Gossypium hirsutum

text: G. hursutum GOLBI 3-week old seedling and roots 26 days post 10,000 reniform nematodes


text: live

text: Generic

text: Gossypium hirsutum GOLIB seven week old plants, roots were collected for transcriptome analysis (control)

text: Gossypium hirsutum

text: G. hursutum GOLBI 6-week old plants and roots (control)


name: ChIP-exo Sequence-Specific Factors (SSFs)

text: Pennsylvania State University

text: live

text: Generic

text: SRA044886 contains five experiments. Experiment 1. 35 bp barcoded fragment run was performed in SRX098242. 4 bp barcode sequences are located at the 5 prim end of each fragment sequences (In 35 bp F3 fragment sequences, first 4 bp are barcode. 5th to 35th bp are genomic sequences from each sample). SRX098242 contains the following run with indicated barcode sequences. SRR346400 contains two samples: Reb1 (replicate 2, TCCC) and Reb1 (replicate 3, TAGC). Experiment 2. Barcoded paired-end run was performed in SRX098212. 35 bp F3 (mate 1) run contains genomic sequences. 10 bp R2 (mate 2) run contains 6 bp barcoded sequences (first 6 bp are barcode in 10 bp R3 paired-end sequences). SRX098212 contains the following 2 runs with indicated barcode sequences: SRR346368 contains two samples: Reb1 (replicate 1, GGGCTT) and Gal4 (replicate 1, TAGCGT). SRR346373 contains Rap1 (ACGGAG ). Experiment 3. 50 bp fragment run was performed in SRX098245, which contains CTCF (replicate 3). Experiment 4. 50 bp fragment run was performed in SRX098244, which contains CTCF (replicate 2). Experiment 5. 50 bp fragment run was performed in SRX098243, which contains CTCF (replicate 1).

text: Saccharomyces cerevisiae S288C

text: Comprehensive Genome-wide Protein-DNA Interactions Detected at Single Nucleotide Resolution


text: University of Oklahoma Norman Campus, Advanced Center for Genome Technology

text: live

text: Generic

text: Gossypium hirsutum PM1218 three week old seedlings inoculated with 50,000 reniform nematodes and roots were collected 15 days post inoculation for transcriptome analysis

text: Gossypium hirsutum

text: G. hursutum PM1218 3-week old seedling and roots 15 days post 50,000 reniform nematodes


text: live

text: Generic

text: Gossypium hirsutum Coker three week old seedlings inoculated with 50,000 reniform nematodes and roots were collected 15 days post inoculation for transcriptome analysis

text: Gossypium hirsutum

text: G. hursutum Coker 3-week old seedling and roots 15 days post 50,000 reniform nematodes


text: Genome Center UC Davis CA

text: live

text: Generic

text: Lactuca serriola

text: Lactuca serriola


text: live

text: Generic

text: Gossypium longicalyx F1-4 three week old seedlings inoculated with 100,000 reniform nematodes and roots were collected 26 days post inoculation for transcriptome analysis

text: Gossypium longicalyx

text: G. hursutum longicalyx F1-4 3-week old seedlings and roots 26 days post 100,000 reniform nematodes infection


text: live

text: Generic

text: Gossypium longicalyx F1-4 seven week old plants, roots were collected for transcriptome analysis (control)

text: Gossypium longicalyx

text: G. hursutum longicalyx F1-4 7-week old plants and roots (control)


text: live

text: Generic

text: Gossypium longicalyx F1-1 three week old seedlings inoculated with 50,000 reniform nematodes and roots were collected 26 days post inoculation for transcriptome analysis

text: Gossypium longicalyx

text: G. hursutum longicalyx F1-1 3-week old seedlings and roots 26 days post 50,000 reniform nematodes infection


text: live

text: Generic

text: Gossypium longicalyx F1-1 seven week old plants, roots were collected for transcriptome analysis (control)

text: Gossypium longicalyx

text: G. hursutum longicalyx F1-1 7-week old plants and roots (control)


CGROOT

text: live

text: Generic

text: Imperata cylindrica, Cogongrass cultivar Mobile S2, root transcriptome (rhizomes not included)

text: Imperata cylindrica var. major

text: I. cylindrica cogongrass cultivar Mobile S2 root


CGLEAF

text: live

text: Generic

text: Imperata cylindrica var. major


text: live

text: Generic

text: Rotylenchulus reniformis, reniform nematode pooled life stages including eggs to J4 stages, whole RNA was extracted for transcriptome analysis

text: Rotylenchulus reniformis

text: R. reniformis transcriptome pooled life stage cDNA


text: University of Oklahoma Norman Campus, Advanced Center for Genome Technology

text: live

text: Generic

text: Rotylenchulus reniformis, reniform nematode genomic DNA from four individual female nematodes amplified using RepliG Whole Genome Amplification procedure and pooled for genome sequencing.

text: Rotylenchulus reniformis

text: R. reniformis transcriptome pooled life stage Genomic DNA


text: live

text: Generic

text: Rotylenchulus reniformis, reniform nematode genomic DNA from four individual female nematodes amplified using SIGMA Whole Genome Amplification procedure and pooled for genome sequencing.

text: Rotylenchulus reniformis


text: Myles, Fralin Life Science Institute, Virginia Tech

text: live

text: Generic

characteristic: days post infection

text: WB CHIKV

characteristic: infection

text: Aedes aegypti

text: Whole body

text: Whole body

characteristic: tissue

text: Ae. aegypti WB CHIKV


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: WB CHIKV

text: Aedes albopictus

text: Whole body

text: Whole body

text: Ae. albopictus WB CHIKV


text: live

text: Generic

characteristic: SRA accession

text: HT CHIKV

text: Aedes albopictus

characteristic: organism

text: head and thorax

text: head and thorax

text: Ae. albopictus HT CHIKV


text: live

text: Generic

text: HT CHIKV-B2(NOV)

text: Aedes albopictus

text: head and thorax

text: head and thorax

text: Ae. albopictus HT CHIKV-B2(NOV)

characteristic: title


characteristic: External Id

text: live

text: Generic

text: HT CHIKV-ΔB2(NOV)

text: Aedes albopictus

text: head and thorax

text: head and thorax

text: Ae. albopictus HT CHIKV-ΔB2(NOV)


characteristic: INSDC center name

text: live

text: Generic

text: HT CHIKV-B2(FHV)

text: Aedes albopictus

text: head and thorax

text: head and thorax

text: Ae. albopictus HT CHIKV-B2(FHV)


characteristic: INSDC secondary accession

text: live

text: Generic

text: C6/36 CHIKV

text: Aedes albopictus

text: larva

text: larva

text: C6/36 CHIKV


text: live

text: Generic

text: C7-10 CHIKV

text: Aedes albopictus

text: larva

text: larva

text: C7-10 CHIKV


text: live

text: Generic

text: U4.4 CHIKV

text: Aedes albopictus

text: larva

text: larva

text: U4.4 CHIKV


text: live

text: Generic

text: Aag2 CHIKV

text: Aedes aegypti

text: embryos

text: embryos

text: Aag2 CHIKV


text: live

text: Generic

text: CCL-125 CHIKV

text: Aedes aegypti

text: larva

text: larva

text: CCL-125 CHIKV


text: live

text: Generic

text: C6/36 CHIKV B2(FHV)

text: Aedes albopictus

text: larva

text: larva

text: C6/36 CHIKV B2(FHV)


text: live

text: Generic

text: C6/36 B2 (FHV) c44y

text: Aedes albopictus

text: larva

text: larva

text: C6/36 B2 (FHV) c44y


text: live

text: Generic

text: C6/36 B2 (FHV) r54q

text: Aedes albopictus

text: larva

text: larva

text: C6/36 B2 (FHV) r54q


ChIP-exo human CTCF

text: Pennsylvania State University

text: live

text: Generic

text: ChIP-exo method was developed to define genomic binding locations with few false positives or negatives.

characteristic: description

text: Homo sapiens

text: ChIP-exo human CTCF


Litopenaeus vannamei

text: Beijing Genome Institute

text: live

text: Generic

text: Penaeus vannamei

text: Pacific white shrimp, Litopenaeus vannamei


text: Duke-NUS postgraduate medical school

text: live

text: Generic

text: Homo sapiens

text: Tumor sample from gastric cancer patient 970010


text: Duke-NUS postgraduate medical school

text: live

text: Generic

text: Homo sapiens

text: tumor sample from gastric cancer patient 98748381


text: Duke-NUS postgraduate medical school

text: live

text: Generic

text: tumor sample from gastric cancer patient 990515

text: Homo sapiens

characteristic: submitted subject id


text: Duke-NUS postgraduate medical school

text: live

text: Generic

text: Homo sapiens

text: tumor sample from gastric cancer patient 990172


text: Duke-NUS postgraduate medical school

text: live

text: Generic

text: Homo sapiens

text: tumor sample from gastric cancer patient 990475


text: Duke-NUS postgraduate medical school

text: live

text: Generic

text: Homo sapiens


text: Duke-NUS postgraduate medical school

text: live

text: Generic

text: Homo sapiens

text: tumor sample from gastric cancer patient 31231321


TGH

text: Duke-NUS postgraduate medical school

text: live

text: Generic

text: NGCII082/LTL - tumor tissue

text: Homo sapiens

text: TGH


TWH

text: Duke-NUS postgraduate medical school

text: live

text: Generic

text: NGCII092/CFI - tumor tissue

text: Homo sapiens

text: TWH


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Vibrio cholerae HE-46

characteristic: strain

text: Vibrio cholerae HE-46


Hsa 58876

text: University of Chicago

text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: Hsa 58876


Ptr YN06-108

text: University of Chicago

text: live

text: Generic

characteristic: NCBI submission model

text: Pan troglodytes

text: Ptr YN06-108


Mmu 17602

text: University of Chicago

text: live

text: Generic

text: Macaca mulatta

text: Mmu 17602


Cae 09168

text: University of Chicago

text: live

text: Generic

text: Chlorocebus aethiops

text: Cae 09168


Mmu YN05-349

text: University of Chicago

text: live

text: Generic

text: Macaca mulatta

text: Mmu YN05-349


Hsa 56295

text: University of Chicago

text: live

text: Generic

text: Homo sapiens

text: Hsa 56295


Ptr YN05-400

text: University of Chicago

text: live

text: Generic

text: Pan troglodytes

text: Ptr YN05-400


text: live

text: Generic

text: Vibrio cholerae HC-55C2

text: Vibrio cholerae HC-55C2


text: live

text: Generic

text: Vibrio cholerae HC-17A1

text: Vibrio cholerae HC-17A1


text: MPIMG

text: live

text: Generic

text: Mus musculus

text: Global profiling of miRNA and the hairpin precursor


text: live

text: Generic

text: Vibrio cholerae HC-77A1

text: Vibrio cholerae HC-77A1


mixtureDSN

text: MPIMG

text: live

text: Generic

text: Mus musculus


text: live

text: Generic

text: Vibrio cholerae HC-62A1

text: Vibrio cholerae HC-62A1


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1048_sR178_2008


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

text: Enermark Time Course Ex S8


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: tomato immature fruit at 17 DPA


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: tomato mature green fruit at 39 DPA


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: tomato breaker fruit at 42 DPA


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: tomato fully ripe fruit at 52 DPA


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

text: Enermark Time Course Ex NS5


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

text: Enermark Time Course Ex NS7


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

text: Enermark Time Course Ex N8


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

text: Baker Petrolite's MHGC IW14 28 Jan 2011


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Vegetative mycelium

text: Paxillus involutus ATCC 200175 SOM

text: Vegetative mycelium on extracted inorganic N-depleted SOM (soil organic material) medium. Arial mycelium on liquid medium and glass beads

characteristic: in vivo conditions

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Paxillus involutus ATCC 200175

text: Generic sample from Paxillus involutus ATCC 200175


characteristic: INSDC first public

text: live

text: Generic

text: mycelium

characteristic: culture-collection

text: Paxillus involutus ATCC 200175 MNM

text: 10 days

text: Mycelium radially grown in liquid MNM medium and on glass beads, in RT and ambient light

text: standard

text: standard

text: Paxillus involutus ATCC 200175

text: ATCC 200175


text: University of Calgary

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: hydrocarbon metagenome

text: Baker Petrolite's MHGC WP17 28 Jan 2011


text: University of Calgary

text: live

text: Generic

characteristic: SRA accession

text: hydrocarbon metagenome

characteristic: organism

text: Baker Petrolite's MHGC PW18 28 Jan 2011


characteristic: External Id

text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

text: Baker Petrolite's MHGC WP20 28 Jan 2011

characteristic: title


text: University of Calgary

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: hydrocarbon metagenome

text: Enermark CO WS 2/17-2


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

text: Enermark CO producer-3


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

text: Enermark CO producer-4


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

text: Enermark CO producer-7


text: HudsonAlpha Institute

text: live

text: Generic

text: 10 ng

characteristic: mrna input

text: Homo sapiens

text: Directional Tn-RNA-seq

characteristic: protocol

text: Universal human reference RNA (Agilent)


text: HudsonAlpha Institute

text: live

characteristic: INSDC status

text: Generic

text: 10 ng

text: Homo sapiens

text: Directional RNA ligation

text: Universal human reference RNA (Agilent)


text: HudsonAlpha Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: cell line

text: 50 ng

text: Homo sapiens

text: Standard RNA-seq


text: HudsonAlpha Institute

text: live

text: Generic

text: 50 ng

text: Homo sapiens

text: Tn-RNA-seq


text: HudsonAlpha Institute

text: live

text: Generic

text: 50 ng

text: Homo sapiens

text: Directional Tn-RNA-seq


text: HudsonAlpha Institute

text: live

text: Generic

text: 10 ng

text: Homo sapiens

text: Tn-RNA-seq


text: HudsonAlpha Institute

text: live

text: Generic

text: 5 ng

text: Homo sapiens

text: Tn-RNA-seq


text: HudsonAlpha Institute

text: live

text: Generic

text: 1 ng

text: Homo sapiens

text: Tn-RNA-seq


text: HudsonAlpha Institute

text: live

text: Generic

text: 500 pg

text: Homo sapiens

text: Tn-RNA-seq


text: HudsonAlpha Institute

text: live

text: Generic

text: 100 pg

text: Homo sapiens

text: Tn-RNA-seq


text: HudsonAlpha Institute

text: live

text: Generic

text: 10 pg

text: Homo sapiens

text: Tn-RNA-seq


text: HudsonAlpha Institute

text: live

text: Generic

text: 1 pg

text: Homo sapiens

text: Tn-RNA-seq


text: live

text: Generic

text: Rhinovirus A

characteristic: strain

text: Rhinovirus p1080_sR698_2008


text: University of Oklahoma Norman Campus, Advanced Center for Genome Technology

text: live

text: Generic

text: This pool contains the following BACs: CBV064M05, CBV133F04, CBV165G03, and CBV103I14

characteristic: description

text: Gossypium hirsutum

text: 454 pool of Gossypium hirsutum BACs


characteristic: INSDC first public

text: live

text: Generic

text: This pool contains the following BACs: CBV004P17, CBV188K21, CBV015C19, and CBV155K01

text: Gossypium hirsutum

text: 455 pool of Gossypium hirsutum BACs


text: live

text: Generic

text: This pool contains the following BACs: CBV031N01, CBV006G16, CBV076H08, and CBV176F03

text: Gossypium hirsutum

text: 456 pool of Gossypium hirsutum BACs


gDNA

text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Lagenidiaceae

text: whole genome shotgun sequencing of non-bisulfire treated DNAs (negative control)


text: live

text: Generic

text: This pool contains the following BACs: CBV101N18, CBV103A21, CBV056O13, and CBV102M21

text: Gossypium hirsutum

text: 457 pool of Gossypium hirsutum BACs


text: live

text: Generic

text: This pool contains the following BACs: CBV064M05, CBV133F04, CBV165G03, and CBV103I18

text: Gossypium hirsutum

text: 458 pool of Gossypium hirsutum BACs


LwaltiiGenomicLibrary

text: University of Washington

text: live

text: Generic

text: The budding yeast, Lachancea waltii (ATCC56500). Complete genomic library (pre-screened).

text: Lachancea waltii

text: Lachancea waltii genomic library


LwaltiiARSLibrary

text: University of Washington

text: live

text: Generic

text: The budding yeast Lachancea waltii (ATCC56500). Autonomously Replicating Sequence (ARS) library (screened).

text: Lachancea waltii

text: Lachancea waltii ARS Library


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: Illumina sequencing 75bp single-end

text: chloramphenicol

characteristic: drug used in morbidostat (see paper)

text: Escherichia coli str. K-12 substr. MG1655

text: Escherichia coli, isogenic isolate of population evolved in morbidostat, genomic data


text: Harvard Medical School - Roy Kishony

characteristic: INSDC last update

text: live

text: Generic

text: Illumina sequencing 75bp single-end

text: doxycycline


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

characteristic: NCBI submission package

text: Illumina sequencing 75bp single-end

text: trimethoprim


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

characteristic: SRA accession

text: Illumina sequencing 75bp single-end

text: wildtype strain


text: live

text: Generic

text: leaf

text: Amorphophallus konjac leaf

text: young

text: greenhouse

characteristic: in vivo conditions

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Amorphophallus konjac

characteristic: organism

text: Generic sample from Amorphophallus konjac


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: corm

text: Amorphophallus konjac corm

text: young

text: greenhouse

text: standard

text: standard

text: Amorphophallus konjac

characteristic: title


text: KIT - Karlsruhe Institute of Technology

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: adult

characteristic: dev-stage

text: Anguilla japonica

characteristic: lab-host

text: whole worm

characteristic: organ

text: Anguillicola crassus

text: female and male

characteristic: sex

text: Adult Anguillicola crassus

text: TOPO

characteristic: vector


text: USDA-ARS, Coastal Plains Soil, Water, and Plant Research Center

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: Siokra L-23

characteristic: cultivar

text: cDNA-AFLP analysis for the differentially expressed genes under water deficit stress in upland cotton (Gossypium hirsutum L.)

characteristic: description

text: Flowering period

text: Gossypium hirsutum

text: leaf and root

characteristic: tissue-type

text: Differentially expressed transcript derived fragments (TDFs) upon water deficit stress in Gossypium hirsutum L.


characteristic: External Id

text: Central Inland Fisheries Research Institute

text: live

text: Generic

text: Klebsiella aerogenes KCTC 2190

characteristic: organism

text: KCTC 2190

characteristic: strain

text: Enterobacter aerogenes KCTC 2190 salt tolerant library

text: type strain of Klebsiella aerogenes

characteristic: type material


text: Chinese Academy of Tropical Agricultural Sciences

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: Jinhuang

text: Used PCR based subtractive hybridization to isolate embryo-abortion related genes in Mangifera indica L. cv. Jinhuang

text: Embryo

text: Mangifera indica

characteristic: title

text: pGEM-T Easy


text: National Institute of Horticultural & Herbal Science

text: live

text: Generic

characteristic: NCBI submission model

text: Stratagene's cDNA Synthesis Kit (catalog number 200401), ZAP Express Vector Kit (catalog number 239211), and Gigapack III Gold Packaging Extract (catalog number 200201) were used to construct the cDNA library. After second-strand cDNA synthesis, adapter ligation, and size fractionation, the column eluent was then ligated into Stratagene's UniZAP XR vector that has been digested with EcoRI and XhoI, and phosphorylated by Stratagene. The ligated DNA was packaged using Stratagene's Gigapack III Gold Packaging Extract and the pBluescript SK phagemid and insert was circularized to phagemid by in vivo excision.

text: Centella asiatica

text: EcoRI

text: XhoI

text: hairy roots elicited by methyl jasmonate

text: CaHRMJ cDNA library

text: pBluescript SK


Sockeye SOLID Yako Beach 1001 testes

text: University of Washington

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Individual 1001 testes transcriptome. Yako Beach, Lake Aleknagik, Wood-Igushik drainage, AK.

text: Oncorhynchus nerka

text: Sockeye SOLid Yako Beach 1001 testes


text: UC Davis

text: live

text: Generic

text: 0 days

characteristic: days differentiated

text: Homo sapiens

text: mismatch control #24

characteristic: sirna

text: H9 cells


text: UC Davis

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: 0 days

text: Homo sapiens

text: DNMT3B knockdown #3B13

text: H9 cells


text: UC Davis

text: live

text: Generic

characteristic: NCBI submission package

text: 12 days

text: Homo sapiens

text: mismatch control #24

text: H9 cells


text: UC Davis

text: live

text: Generic

text: 12 days

text: Homo sapiens

text: DNMT3B knockdown #3B13

text: H9 cells


text: animal science and technology, Yangzhou university

text: live

text: Generic

text: Sutai

characteristic: breed

text: AA genotype at M307 of FUT1 gene

characteristic: genotype

text: Sus scrofa

text: 524 piglet with AA genotype of FUT1 gene

text: 524 piglet sib of 512

characteristic: subject

text: duodenal

characteristic: tissue


characteristic: External Id

text: live

text: Generic

text: Sutai

text: AA genotype at M307 of FUT1 gene

text: Sus scrofa

characteristic: organism

text: 2129 piglet with AA genotype of FUT1 gene

text: 2129 piglet sib of 2134

text: duodenal


characteristic: INSDC center name

text: live

text: Generic

text: Sutai

text: GG genotype at M307 of FUT1 gene

text: Sus scrofa

text: 512 piglet sib of 524

text: duodenal

text: 512 piglet with GG genotype of FUT1 gene rep1


text: live

characteristic: INSDC status

text: Generic

text: Sutai

text: GG genotype at M307 of FUT1 gene

text: Sus scrofa

text: 512 piglet sib of 524

text: duodenal

text: 512 piglet with GG genotype of FUT1 gene rep2


text: live

text: Generic

text: Sutai

text: GG genotype at M307 of FUT1 gene

text: Sus scrofa

text: 2134 piglet with GG genotype of FUT1 gene

text: 2134 piglet sib of 2129

text: duodenal

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

text: Sutai

text: GG genotype at M307 of FUT1 gene

text: Sus scrofa

text: 2383 piglet with GG genotype of FUT1 gene

text: 2383 piglet

text: duodenal


text: Institute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Healthy women (30 +/-0.9 years old, primiparity) when the infant were aged at 60 days

characteristic: developmental stage

text: female

characteristic: gender

text: Homo sapiens

text: Breast milk exosomes

characteristic: sample type

text: Breast milk exosomes

text: Breast milk exosomes rep1


characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: female

text: Homo sapiens

text: Breast milk exosomes

text: Breast milk exosomes

text: Breast milk exosomes rep2


characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: female

text: Homo sapiens

text: Breast milk exosomes

text: Breast milk exosomes

text: Breast milk exosomes rep3


text: live

text: Generic

text: female

text: Homo sapiens

text: Breast milk exosomes

text: Breast milk exosomes

text: Breast milk exosomes rep4


text: Beijing Genome Institute

text: live

text: Generic

text: Normal adult human blood specimen

characteristic: description

text: Homo sapiens


text: Beijing Genome Institute

text: live

text: Generic

text: Human blood specimen with hereditary spastic paraplegia with thin corpus callosum (HSP-TCC, MIM# 604360)

text: Homo sapiens


text: Beijing Genome Institute

text: live

text: Generic

text: Human blood specimen with X-linked ichthyosis (XLI, MIM#308100)

text: Homo sapiens


text: Beijing Genome Institute

text: live

text: Generic

text: Human blood specimen wiht Marfan syndrome (MFS, MIM# 154700)

text: Homo sapiens


text: Beijing Genome Institute

text: live

text: Generic

text: Human blood specimen with Wilson disease (MIM# 277900)

text: Homo sapiens


text: Beijing Genome Institute

text: live

text: Generic

text: Human blood specimen wiht thalassemias (MIM# 603902)

text: Homo sapiens


text: Beijing Genome Institute

text: live

text: Generic

text: Human blood specimen with Duchenne muscular dystrophy (DMD, MIM# 310200)

text: Homo sapiens


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae GA08825

characteristic: strain

text: Streptococcus pneumoniae GA08825

value: susceptible

value: cefuroxime

value: clindamycin

value: trovafloxacin


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Rhinovirus A

characteristic: organism

text: Rhinovirus p1086_sR457_2008


text: Institute of bioorganic chemistry of the Russian Academy of Sciences

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: Sample sequenced by Illumina

characteristic: title


text: Naval Medical Research Center, Biological Defense Research Directorate

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NMRC sample ID

text: Bacillus thuringiensis serovar pakistani str. T13001

text: pakistani

characteristic: serovar

text: Bacillus thuringiensis strain T13001 NS3021


characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: Ion Torrent sample


characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: Bacillus cereus R309803

text: Bacillus cereus strain R_3098/03 NS3032


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: plume/gill

text: Riftia pachyptila plume

characteristic: description

text: HPRS good conditions

characteristic: in vivo conditions

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Lamellibrachia sp.

text: both

characteristic: sex

text: Generic sample from Lamellibrachia sp.


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: trophosome

text: Riftia pachyptila trophsome

text: HPRS good conditions

text: standard

text: standard

text: Lamellibrachia sp.

text: both

text: Generic sample from Lamellibrachia sp.


text: Ben-Hur, Computer Science, Colorado State University

text: live

characteristic: INSDC status

text: Generic

text: 2-week-old seedling

characteristic: developmental stage

text: Columbia

characteristic: ecotype

text: Arabidopsis thaliana

characteristic: organism

text: two-week-old seedling

text: wild-type replicate 1


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: 2-week-old seedling

text: Columbia

text: Arabidopsis thaliana

text: two-week-old seedling

text: wild-type replicate 2

characteristic: title


characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: trophosome

text: Ridgeia piscesae trophosome

text: adult

text: experimental high pressure respirometry

text: standard

text: standard

text: Lamellibrachia sp.

text: Generic sample from Lamellibrachia sp.


characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: Rhinovirus A

characteristic: strain

text: Rhinovirus p1097_sR855_2008


text: live

text: Generic

characteristic: NMRC sample ID

text: Bacillus thuringiensis serovar monterrey BGSC 4AJ1

text: monterrey

characteristic: serovar

text: BGSC 4AJ1

text: Bacillus thuringiensis strain BGSC 4AJ1 NS3039


Wheat chromosome 3A MTP

text: Kansas State University

text: live

text: Generic

text: A set of 2,743 BAC clones distributed among 1,104 BAC contigs assembled using the high information content fingerprint data obtained for 190,464 BAC clones from the wheat chromosome 3A (http://wggrc.plantpath.ksu.edu/wheat/3A/3A_index.html). Minimum tiling path (MTP) was selected using the minimum e-value score of e-30 using the MTP function of the FPCv9.3 program (Nelson and Soderlund 2009). An overlap of 25-50 kb between adjacent BAC clones was used to define the MTP. Depending on the length of a contig from two to six BAC clones per contig were selected for sequencing. The 2,743 BAC clones were re-arrayed in 14 microtiter plates each with 14 rows and 14 columns. The BAC clones were individually grown and grouped in three-dimensional pools to develop Plate (14), Row (14), and Column (14) pools. The BAC DNA was isolated from 42 pools and barcoded during library construction step.

characteristic: description

text: Triticum aestivum

text: Wheat chromosome 3A minimum tiling path (MTP) consists of 2743 BAC clones


Batrachoseps nigriventris shotgun reads

characteristic: External Id

text: Colorado State University

text: live

text: Generic

text: Batrachoseps nigriventris

text: Batrachoseps nigriventris 454 shotgun reads


characteristic: INSDC center name

text: live

text: Generic

text: Pichia angusta NCYC 495 leu1.1

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Ogataea polymorpha

text: NCYC 495 leu1.1

text: Generic sample from Ogataea angusta NCYC 495 leu1.1


text: Korea Research Institute of Bioscience and Biotechnology (KRIBB)

text: live

characteristic: INSDC status

text: Generic

text: Mistletoe

characteristic: cultivar

text: After sterilization, the seeds were germinated by incubating at 25degC under cool-white fluorescent light (40 umol m-2s-1) with a 16-h photoperiod on sterilized filter papers. Green haustoria (>2 mm in length) were excised from seeds, and the library was constructed with the ZAPII cDNA library construction kit (Stratagene).

text: Haustoria developmental stage after germination

characteristic: dev-stage

text: Viscum coloratum

text: Haustorium

characteristic: tissue-type

text: Mistletoe haustorium


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

text: DNA

characteristic: analyte type

text: PAGE

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: DS-CRM-PUB-MDS

text: White Blood Cells

characteristic: histological type

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Case-Control

characteristic: study design

text: PAGE: Multiethnic Cohort (MEC)

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: PAGE

characteristic: submitter handle

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study PAGE: Multiethnic Cohort (MEC)

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: DNA

text: PAGE

text: Blood

text: DS-CRM-PUB-MDS

text: White Blood Cells

text: No

text: Homo sapiens

text: female

text: Case-Control

text: PAGE: Multiethnic Cohort (MEC)

text: PAGE


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

text: DNA

characteristic: analyte type

text: PAGE

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: DS-CRM-PUB-MDS

text: White Blood Cells

characteristic: histological type

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Case-Control

text: PAGE: Multiethnic Cohort (MEC)

text: PAGE

text: Non-tumor DNA sample from Blood of a human male participant in the dbGaP study PAGE: Multiethnic Cohort (MEC)


text: dbGaP

text: live

text: Generic

text: DNA

text: PAGE

text: Blood

text: DS-CRM-PUB-MDS

text: White Blood Cells

text: No

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Case-Control

characteristic: study design

text: PAGE: Multiethnic Cohort (MEC)

characteristic: study name

text: PAGE


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: PAGE

text: Blood

text: DS-CRM-PUB-MDS

text: White Blood Cells

text: Yes

characteristic: is technical control

text: No

text: Homo sapiens

text: male

text: Case-Control

text: PAGE: Multiethnic Cohort (MEC)

characteristic: submitted sample id

characteristic: submitted subject id

text: PAGE

characteristic: submitter handle

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: PAGE

text: Blood

text: DS-CRM-PUB-MDS

text: White Blood Cells

text: Yes

text: No

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: male

text: Case-Control

text: PAGE: Multiethnic Cohort (MEC)

text: PAGE


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

text: PAGE

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: GRU

text: White Blood Cells

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: male

text: Case-Control

text: PAGE: Multiethnic Cohort (MEC)

text: PAGE


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: PAGE

text: Blood

text: GRU

text: White Blood Cells

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

characteristic: study design

text: PAGE: Multiethnic Cohort (MEC)

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: PAGE


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: PAGE

text: Blood

text: GRU

text: White Blood Cells

text: No

text: Homo sapiens

text: female

text: Case-Control

text: PAGE: Multiethnic Cohort (MEC)

text: PAGE

characteristic: submitter handle

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

characteristic: analyte type

text: PAGE

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

text: GRU

text: White Blood Cells

text: No

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

text: Case-Control

text: PAGE: Multiethnic Cohort (MEC)

text: PAGE


characteristic: External Id

text: University of California - Davis, Drosophila Population Genomics Project

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Sub-Saharan African population - Zambia (Siavonga). Haploid embryo.

characteristic: description

text: Drosophila melanogaster

characteristic: organism


characteristic: INSDC center name

text: live

text: Generic

text: Sub-Saharan African population - Zambia (Siavonga). 5 generations of sib-sib inbreeding; haploid embryo.

text: Drosophila melanogaster


text: Genome Center UC Davis CA

characteristic: INSDC first public

text: live

text: Generic

text: Lactuca serriola

text: Lactuca serriola


text: Alabama A&M University

characteristic: INSDC last update

text: live

text: Generic

text: Four single J4 reniform nematodes were isolated from Alabama populations; nematodes were sterilized; DNA extracted; confirmed the identification through sequencing of 18S &amp; ITS1 rDNA sequences; also confirmed the absence of other microbial sequences through PCR using universal primer pairs for bacteria and fungi; nematode DNA was amplified using the RepliG whole genome amplification (WGA) procedure; DNA was checked for quality and quantity; and finally DNA was pooled for all four nematodes prior to second generation sequencing.

text: Rotylenchulus reniformis


text: Joint Genome Institute, U.S. Department of Energy

text: live

characteristic: INSDC status

text: Generic

text: Aspergillus carbonarius ITEM 5010 YES medium

text: Different growth stages in YES medium (conditions not permissive for ochratoxin A production)

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Aspergillus carbonarius ITEM 5010

text: Generic sample from Aspergillus carbonarius ITEM 5010


text: live

text: Generic

characteristic: NCBI submission model

text: Aspergillus carbonarius ITEM 5010

text: standard

text: standard

text: Aspergillus carbonarius ITEM 5010

text: ITEM 5010

characteristic: strain

characteristic: title


text: Naval Medical Research Center, Biological Defense Research Directorate

text: live

text: Generic

characteristic: NCBI submission package

characteristic: NMRC sample ID

text: Bacillus thuringiensis Bt407

text: Bacillus thuringiensis strain Bt407 NS3868


text: live

text: Generic

text: Bacillus thuringiensis serovar tochigiensis BGSC 4Y1

text: tochigiensis

characteristic: serovar

text: BGSC 4Y1

text: Bacillus thuringiensis strain BGSC 4Y1 NS5540


characteristic: External Id

text: live

text: Generic

text: Bacillus pseudomycoides DSM 12442

text: DSM 12442

text: Bacillus pseudomycoides strain DSM 12442 NS3812


characteristic: INSDC secondary accession

text: live

text: Generic

text: Bacillus cereus BDRD-ST24

text: Bacillus cereus strain BDRD-ST24 NS5537


text: live

text: Generic

characteristic: SRA accession

text: Bacillus cereus 172560W

text: Bacillus cereus strain 172560_W NS3029


IM

text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

characteristic: description

text: Solanum lycopersicum

text: Immature fruit at 17 DPA


MG

text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

characteristic: organism

text: tomato mature green fruit at 39 DPA


Br

text: Boyce Thompson Institute

characteristic: INSDC center name

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: tomato breaker fruit at 42 DPA


text: Boyce Thompson Institute

characteristic: INSDC first public

text: live

text: Generic

text: Solanum lycopersicum

text: tomato fully ripe fruit at 52 DPA


MX

text: Boyce Thompson Institute

characteristic: INSDC last update

text: live

text: Generic

text: Solanum lycopersicum

text: mixture of tomato leaf, root, shoot, flower and fruit tissues


CanineIBD-RNA

text: Medical Biofilm Research Institute

text: live

characteristic: INSDC status

text: Generic

text: RNA extracted, gDNA removed. bTEFAP bacterial tag-encoded FLX-Titanium Amplicon pyrosequencing methods

text: Bacteria

text: 16S rRNA gene sequencing of the duodenal microbiota in dogs with inflammatory bowel disease


Glioma patient

text: HKUST

text: live

text: Generic

text: Sample is blood DNA isolated from anaplastic oligodendroglioma patient

text: Homo sapiens

text: Control sample from the study AluScan: a method for genome-wide scanning of sequence variations in the human genome


text: live

text: Generic

text: Bacillus thuringiensis IBL 4222

text: IBL 4222

text: Bacillus thuringiensis strain ibl 422 NS5497


text: live

text: Generic

text: Bacillus thuringiensis IBL 200

text: IBL 200

text: Bacillus thuringiensis strain ibl 200 NS5496


text: live

text: Generic

text: Bacillus mycoides Rock3-17

text: Bacillus mycoides strain Rock3-17 NS5423


TethX514 Xm

text: CAS

text: live

text: Generic

text: Thermoanaerobacter sp. X514

text: TethX514 Xm


TethX514 Xe

text: CAS

text: live

text: Generic

text: Thermoanaerobacter sp. X514

text: TethX514 Xe


text: live

text: Generic

text: Bacillus mycoides DSM 2048

text: DSM 2048

text: Bacillus mycoides strain DSM 2048 NS3810


text: live

text: Generic

text: Bacillus cereus F65185

text: Bacillus cereus strain F65185 (a.k.a. 2002734558) NS3817


text: live

text: Generic

text: Bacillus cereus Rock4-18

text: Bacillus cereus strain Rock4-18 NS5472


text: live

text: Generic

text: Bacillus cereus Rock3-29

text: Bacillus cereus strain Rock3-29 NS5435


text: live

text: Generic

text: Bacillus cereus Rock1-3

text: Bacillus cereus strain Rock1-3 NS5385


text: live

text: Generic

text: Bacillus cereus BDRD-Cer4

text: Bacillus cereus strain BDRD-Cer4 NS5539


text: live

text: Generic

text: Bacillus cereus BDRD-ST196

text: Bacillus cereus strain BDRD-ST196 NS5538


text: live

text: Generic

text: Bacillus cereus BDRD-ST26

text: Bacillus cereus strain BDRD-ST26 NS5536


text: live

text: Generic

text: Bacillus cereus MM3

text: Bacillus cereus strain MM_3 NS3046


text: live

text: Generic

text: Bacillus cereus BGSC 6E1

text: BGSC 6E1

text: Bacillus cereus strain BGSC 6E1 NS3040


text: Ruvkun, Molecular Biology, Massachusetts General Hospital

text: live

text: Generic

text: adult

characteristic: developmental stage

text: Caenorhabditis elegans

text: Whole worms


text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: Embryos


text: live

text: Generic

text: adult

text: Caenorhabditis elegans

text: Whole worms

text: Wild type_adult


text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: Embryos

text: Wild type_embryo


text: Laboratory of Gene Regulation, Ludwig Institute for Cancer Research

text: live

text: Generic

text: Bowtie

characteristic: alignment program

characteristic: cell line

text: Wild type

characteristic: genotype/variation

text: Homo sapiens

text: human colorectal carcinoma cell line HCT116


Half plate amplicon sequencing

text: UNCC

text: live

text: Generic

characteristic: NCBI submission model

text: Bacteria

text: Microbiome changes in Response to Antibiotic Therapies in a Single CF patient

characteristic: title


text: Naval Medical Research Center, Biological Defense Research Directorate

text: live

text: Generic

characteristic: NCBI submission package

characteristic: NMRC sample ID

text: Bacillus cereus AH676

characteristic: strain

text: Bacillus cereus strain AH676 NS5481


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

text: Bacillus thuringiensis serovar pulsiensis BGSC 4CC1

text: pulsiensis

characteristic: serovar

text: BGSC 4CC1

text: Bacillus thuringiensis strain BGSC 4CC1 NS5012


text: live

text: Generic

characteristic: SRA accession

text: Bacillus cereus AH1271

characteristic: organism

text: Bacillus cereus strain AH1271 NS5482


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Bacillus cereus AH1272

text: Bacillus cereus strain AH1272 NS5483


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Bacillus cereus AH1273

text: Bacillus cereus strain AH1273 NS5484


text: live

text: Generic

text: Bacillus thuringiensis serovar andalousiensis BGSC 4AW1

text: andalousiensis

text: BGSC 4AW1

text: Bacillus thuringiensis strain BGSC 4AW1 NS5008