text: Institute for Genome Sciences

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.vi

text: 300 ul

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.human-associated

characteristic: env package

text: terrestrial biome [ENVO:00000446]

characteristic: environment (biome)

characteristic: environment (feature)

text: oronasal secretion [ENVO:02000035]

characteristic: environment (material)

text: USA:Madison, WI

text: 43.0423 N 89.2404 W

characteristic: host age

text: oronasal secretion [ENVO:02000035]

characteristic: host body product

text: female

characteristic: host sex

text: HRV-A

text: nasal cavity

text: virus

text: Human rhinovirus A44

text: Homo sapiens

characteristic: specimen id

characteristic: strain

characteristic: subspecific genetic lineage

text: MIGS Viral sample from Human rhinovirus A strain HRV-A44_p1191_sR1286_2009


status: PUBLIC

characteristic: External Id

text: Institute for Genome Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-associated

characteristic: NCBI submission model

text: MIGS.vi

characteristic: NCBI submission package

text: 300 ul

tag: attribute

characteristic: amount or size of sample collected

text: Keywords: GSC:MIxS;MIGS:5.0

text: MIGS/MIMS/MIMARKS.human-associated

text: terrestrial biome [ENVO:00000446]

text: human-associated habitat [ENVO:00009003]

text: oronasal secretion [ENVO:02000035]

text: USA:Madison, WI

text: 43.0423 N 89.2404 W

text: oronasal secretion [ENVO:02000035]

text: female

characteristic: host subject id

characteristic: host taxid

text: HRV-A

text: nasal cavity

text: virus

characteristic: investigation type

text: rhinovirus A16

characteristic: organism

text: Sequence of Newly Discovered and Variant Human Rhinoviruses in Patients with Respiratory Compromise

characteristic: project name

text: Xpress EZ-RNA 96 Kit (Express Biotech, MD)

characteristic: sample material processing

text: Homo sapiens

characteristic: specific host

text: MIGS Viral sample from Human rhinovirus A strain HRV-A16_p1172_sR1216_2009

characteristic: title


text: Institute for Genome Sciences

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.vi

text: 300 ul

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.human-associated

characteristic: env package

text: terrestrial biome [ENVO:00000446]

characteristic: environment (biome)

characteristic: environment (feature)

text: oronasal secretion [ENVO:02000035]

characteristic: environment (material)

text: USA:Madison, WI

text: 43.0423 N 89.2404 W

text: Asthma

characteristic: health or disease status of specific host at time of collection

characteristic: host age

text: oronasal secretion [ENVO:02000035]

characteristic: host body product

text: male

characteristic: host sex

text: HRV-A

text: nasal cavity

text: virus

text: rhinovirus A23

text: Homo sapiens

characteristic: specimen id

characteristic: strain

characteristic: subspecific genetic lineage

text: MIGS Viral sample from Human rhinovirus A strain HRV-A23_p1162_sR1549_2009_g2


characteristic: External Id

text: Institute for Genome Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-associated

characteristic: NCBI submission model

text: MIGS.vi

characteristic: NCBI submission package

text: 300 ul

characteristic: amount or size of sample collected

text: Keywords: GSC:MIxS;MIGS:5.0

text: MIGS/MIMS/MIMARKS.human-associated

text: terrestrial biome [ENVO:00000446]

text: oronasal secretion [ENVO:02000035]

text: USA:Madison, WI

text: 43.0423 N 89.2404 W

text: oronasal secretion [ENVO:02000035]

text: male

characteristic: host subject id

characteristic: host taxid

text: HRV-A

text: nasal cavity

text: virus

characteristic: investigation type

text: rhinovirus A1

characteristic: organism

characteristic: project name

text: Homo sapiens

text: MIGS Viral sample from Human rhinovirus A strain HRV-A01_p1103_sR1167_2009


text: Institute for Genome Sciences

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.vi

text: 300 ul

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.human-associated

characteristic: env package

text: terrestrial biome [ENVO:00000446]

characteristic: environment (biome)

characteristic: environment (feature)

text: oronasal secretion [ENVO:02000035]

characteristic: environment (material)

text: USA:Madison, WI

text: 43.0423 N 89.2404 W

characteristic: host age

text: oronasal secretion [ENVO:02000035]

characteristic: host body product

text: not determined

characteristic: host sex

text: HRV-C

text: nasal cavity

text: virus

text: rhinovirus A25

characteristic: sample material processing

text: Homo sapiens

characteristic: specific host

text: MIGS Viral sample from Human rhinovirus C strain HRV-C25_p1013_s2893_1999

characteristic: title


characteristic: External Id

text: Institute for Genome Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-associated

characteristic: NCBI submission model

text: MIGS.vi

characteristic: NCBI submission package

text: 300 ul

characteristic: amount or size of sample collected

text: Keywords: GSC:MIxS;MIGS:5.0

text: MIGS/MIMS/MIMARKS.human-associated

text: terrestrial biome [ENVO:00000446]

text: oronasal secretion [ENVO:02000035]

text: USA:Madison, WI

text: 43.0423 N 89.2404 W

text: oronasal secretion [ENVO:02000035]

text: not determined

characteristic: host subject id

text: HRV-C

text: nasal cavity

text: virus

text: Rhinovirus C

text: Homo sapiens

characteristic: specimen id

characteristic: strain

text: C-novel

characteristic: subspecific genetic lineage

text: MIGS Viral sample from Human rhinovirus C strain HRV-C45_p1084_s3920_2000


text: Institute for Genome Sciences

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.vi

text: 300 ul

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.human-associated

characteristic: env package

text: terrestrial biome [ENVO:00000446]

characteristic: environment (biome)

characteristic: environment (feature)

text: oronasal secretion [ENVO:02000035]

characteristic: environment (material)

text: USA:Madison, WI

text: 43.0423 N 89.2404 W

characteristic: host age

text: oronasal secretion [ENVO:02000035]

characteristic: host body product

text: not determined

characteristic: host taxid

text: HRV-C

text: nasal cavity

text: virus

characteristic: investigation type

text: Rhinovirus C

characteristic: organism

characteristic: project name

text: Homo sapiens

text: C-novel

text: MIGS Viral sample from Human rhinovirus C strain HRV-C43_p1075_s3911_2000


characteristic: External Id

text: Institute for Genome Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-associated

characteristic: NCBI submission model

text: MIGS.vi

characteristic: NCBI submission package

text: 300 ul

characteristic: amount or size of sample collected

text: Keywords: GSC:MIxS;MIGS:5.0

text: MIGS/MIMS/MIMARKS.human-associated

text: terrestrial biome [ENVO:00000446]

text: oronasal secretion [ENVO:02000035]

text: USA:Madison, WI

text: 43.0423 N 89.2404 W

text: oronasal secretion [ENVO:02000035]

text: not determined

characteristic: host sex

text: HRV-C

text: nasal cavity

text: virus

text: rhinovirus A15

characteristic: sample material processing

text: Homo sapiens

characteristic: specific host

text: MIGS Viral sample from Human rhinovirus C strain HRV-C15_p1259_s2935_1999

characteristic: title


text: Institute for Genome Sciences

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.vi

text: 300 ul

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.human-associated

characteristic: env package

text: terrestrial biome [ENVO:00000446]

characteristic: environment (biome)

characteristic: environment (feature)

text: oronasal secretion [ENVO:02000035]

characteristic: environment (material)

text: USA:Madison, WI

text: 43.0423 N 89.2404 W

characteristic: host age

text: oronasal secretion [ENVO:02000035]

characteristic: host body product

text: female

characteristic: host subject id

text: HRV-C

text: nasal cavity

text: virus

text: rhinovirus A7

text: Homo sapiens

characteristic: specimen id

characteristic: strain

characteristic: subspecific genetic lineage

text: MIGS Viral sample from Human rhinovirus C strain HRV-C07_p1064_sR982_2009_g1


characteristic: External Id

text: Institute for Genome Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-associated

characteristic: NCBI submission model

text: MIGS.vi

characteristic: NCBI submission package

text: 300 ul

characteristic: amount or size of sample collected

text: Keywords: GSC:MIxS;MIGS:5.0

text: MIGS/MIMS/MIMARKS.human-associated

text: terrestrial biome [ENVO:00000446]

text: oronasal secretion [ENVO:02000035]

text: USA:Madison, WI

text: 43.0423 N 89.2404 W

text: oronasal secretion [ENVO:02000035]

text: male

characteristic: host taxid

text: HRV-A

text: nasal cavity

text: virus

characteristic: investigation type

text: rhinovirus A75

characteristic: organism

characteristic: project name

text: Homo sapiens

text: MIGS Viral sample from Human rhinovirus A strain HRV-A75_p1038_sR149_2008


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Targeted Biofilm samples from two redox zones- FS08_3

characteristic: description

text: soil metagenome

characteristic: sample number

text: Generic sample from soil metagenome

characteristic: title


name: A. irradians adult eye 454 transcriptome

characteristic: External Id

text: Iowa State University

text: live

text: Generic

text: Scallops were obtained live from Farm-2-Market.com. All eyes from 48 adult A. irradians individuals were pooled for total RNA extraction, followed by normalized cDNA library construction by Agencourt Bioscience Corporation (Beverly, MA), then 454 sequencing at the Indiana University, Bloomington Center for Genomics and Bioinformatics.

text: Argopecten irradians


text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Generic

text: Baltic Sea site KBB sample SWE 21_20.5m

text: marine sediment metagenome

text: Generic sample from marine sediment metagenome


text: Job Dekker Lab, Program in Gene Function and Expression, University of Massachusetts Medical School

characteristic: INSDC first public

text: live

text: Generic

characteristic: biological replicate

characteristic: cell line

text: A-MuLV transformed pro-B cells

characteristic: cell type

text: ATM-/-

characteristic: genotype

text: Mus musculus

text: A-MuLV-transformed pro-B cell line, ATM-/-

text: Hi-C ATM-/- I-SceI-chr2-R1

text: STI571 for 2d

characteristic: treatment


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: A-MuLV transformed pro-B cells

text: ATM-/-

text: Mus musculus

text: Hi-C ATM-/- I-SceI-chr2-R2

text: STI571 for 2d


characteristic: INSDC secondary accession

text: live

text: Generic

text: A-MuLV transformed pro-B cells

text: ATM-/-

text: Mus musculus

characteristic: organism

text: Hi-C ATM-/- I-SceI-chr7-R1

text: STI571 for 2d


text: live

text: Generic

characteristic: SRA accession

text: A-MuLV transformed pro-B cells

text: ATM-/-

text: Mus musculus

text: Hi-C ATM-/- I-SceI-chr18-R1

text: STI571 for 2d


text: live

text: Generic

text: A-MuLV transformed pro-B cells

text: ATM-/-

text: Mus musculus

text: Hi-C ATM-/- I-SceI-chr18-R2

text: STI571 for 2d


text: live

text: Generic

text: A-MuLV transformed pro-B cells

text: WT

text: Mus musculus

text: A-MuLV-transformed pro-B cell line, WT

text: Hi-C WT I-SceI-chr15-R1

text: STI571 for 2d


text: live

text: Generic

text: A-MuLV transformed pro-B cells

text: WT

text: Mus musculus

text: A-MuLV-transformed pro-B cell line, WT

text: Hi-C WT I-SceI-chr2-R1

text: STI571 for 2d


red crucian carp

text: Hunan Normal University

text: live

text: Generic

text: Carassius auratus red var.

text: Characterization and comparative profiling of RNA transcriptomes in red crucian carp


red crucian carp and common carp

text: Hunan Normal University

text: live

text: Generic

text: Carassius auratus red var.

text: Characterization and comparative profiling of RNA transcriptomes common carp


text: DOE Joint Genome Institute

text: live

text: Generic

text: Wetland Surface Sediment Feb2011 Site B2 Tule

characteristic: description

text: soil metagenome

characteristic: sample number

text: Generic sample from soil metagenome


name: red crucian carp ,common carp and tetrapoid carp(454)_1

characteristic: External Id

text: Hunan Normal University

text: live

text: Generic

text: Carassius auratus red var.

characteristic: title


name: red crucian carp ,common carp and tetrapoid carp(454)

text: Hunan Normal University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Carassius auratus red var.

text: haracterization and comparative profiling of RNA transcriptomes in red crucian carp


text: Montana State University

text: live

text: Generic

text: Samples are from a diatomaceous alkaline-siliceous geothermal biological soil crust across a 1ha study area. They are further subdivided by photic depth, replicated, and subsampled to assess heterogeneity within samples.

text: uncultured eukaryote

text: 18S bar-coded sequences - first half of total


text: Montana State University

text: live

text: Generic

text: uncultured eukaryote

text: Second half of 18S bar-coded pyrosequence run


text: DOE Joint Genome Institute

text: live

text: Generic

text: Targeted Biofilm samples from two redox zones- PC08_3

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Targeted Biofilm samples from two redox zones- LI09_4

text: soil metagenome

text: Generic sample from soil metagenome


red crucian carp_1

text: Hunan Normal University

text: live

text: Generic

text: a 2 year-old female red crucian carp were collected from Engineering Center of Polyploidy Fish Breeding of the National Education Ministry located at Hunan Normal University. RNA was extracted from liver tissue.

text: Carassius auratus red var.

text: Characterization and comparative profiling of RNA transcriptomes in red crucian carp , common carp and tetraploid carp.


common carp _1

text: Hunan Normal University

text: live

text: Generic

text: a 2 year-old male common carp were collected from Engineering Center of Polyploidy Fish Breeding of the National Education Ministry located at Hunan Normal University. RNA was extracted from liver tissue.

text: Cyprinus carpio


tetraploid carp_1

text: Hunan Normal University

text: live

text: Generic

text: A 2 year-old male F18 tetraploid hybrid of red crucian carp (♀) * common carp (♂) were collected from Engineering Center of Polyploidy Fish Breeding of the National Education Ministry located at Hunan Normal University.RNA was extracted from liver tissue

text: Carassius auratus x Cyprinus carpio


text: DOE Joint Genome Institute

text: live

text: Generic

text: Targeted Biofilm samples from two redox zones- GS10_10

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Light Crust, Colorado Plateau, Green Butte 2

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Wetland Surface Sediment Feb2011 Site L1 Cattail

text: soil metagenome

text: Generic sample from soil metagenome


text: National Center for Biological Sciences,NCBS-TIFR

text: live

text: Generic

text: Staphylococcus aureus subsp. aureus 118

characteristic: strain

text: aureus

characteristic: sub species

text: Genome sequencing of Staphylococcus aureus 118 ST772


text: DOE Joint Genome Institute

text: live

text: Generic

text: Wetland Surface Sediment Feb2011 Site B2 Cattail

text: soil metagenome

text: Generic sample from soil metagenome


5A tRNA

text: University of Illinois, Champaign-Urbana

text: live

text: Generic

text: Raw directional RNAseq reads mapping in the sense and antisense direction of tRNA genes of Buchnera aphidicola 5A

text: Buchnera aphidicola str. 5A (Acyrthosiphon pisum)

text: 5A (Acyrthosiphon pisum)

text: Buchnera aphidicola 5A tRNA directional RNAseq


LSR1 tRNA

text: live

text: Generic

text: Raw directional RNAseq reads mapping in the sense and antisense direction of tRNA genes of Buchnera aphidicola LSR1

text: Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)

text: LSR1 (Acyrthosiphon pisum)

text: Buchnera aphidicola LSR1 tRNA directional RNAseq


Ak tRNA

text: live

text: Generic

text: Raw directional RNAseq reads mapping in the sense and antisense direction of tRNA genes of Buchnera aphidicola Ak

text: Buchnera aphidicola str. Ak (Acyrthosiphon kondoi)

text: Ak (Acyrthosiphon kondoi)

text: Buchnera aphidicola Ak tRNA directional RNAseq


Ua tRNA

text: live

text: Generic

text: Raw directional RNAseq reads mapping in the sense and antisense direction of tRNA genes of Buchnera aphidicola Ua

text: Buchnera aphidicola str. Ua (Uroleucon ambrosiae)

text: Ua (Uroleucon ambrosiae)

text: Buchnera aphidicola Ua tRNA directional RNAseq


Sg

text: live

text: Generic

text: Raw directional RNAseq reads mapping in the sense and antisense direction of tRNA genes of Buchnera aphidicola Sg

text: Buchnera aphidicola str. Sg (Schizaphis graminum)

text: Sg (Schizaphis graminum)

text: Buchnera aphidicola Sg tRNA directional RNAseq


text: Department of Medical biochemistry and cell biology, Gothenburg University

text: live

text: Generic

text: No

characteristic: develomental stage

text: Schizosaccharomyces pombe

text: Fission yeast cells

text: 972 h-

text: No TAP tag

characteristic: tap tag

text: non antibody control ChIPseq


characteristic: INSDC last update

text: live

text: Generic

text: RNA Polymerase II CTD antibody [CTD(4H8) (Abcam, ab5408)]

characteristic: chip antibody

text: No

text: Schizosaccharomyces pombe

text: Fission yeast cells

text: 972 h-

text: No TAP tag

text: RNA Polymerase II CTD domain ChIPseq


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mediator subunit Med7 antibody [conjugated with beads (IgG Sepharose 6 Fast Flow from GE healthcare, 17-0969-01, Lot# 10026538)]

text: No

text: Schizosaccharomyces pombe

text: Fission yeast cells

text: 972 h-

text: has TAP tag

text: Mediator subunit Med7 ChIPseq


text: MCDB, Yale University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: Day 0-1 post-L4 molt (young adult stage. Specifically, 66 hrs after synchronized L1 stage animals were placed bacterial plates)

characteristic: developmental stage

text: hermaphrodites

characteristic: gender

characteristic: growth condition

text: Caenorhabditis elegans

text: untreated young adult animals (baseline)

text: Untreated for 0hrs

characteristic: stress conditions


characteristic: External Id

text: MCDB, Yale University

text: live

text: Generic

characteristic: SRA accession

text: hermaphrodites

text: Caenorhabditis elegans

characteristic: organism

text: untreated young adult animals (6 hrs)

text: Untreated for 6 hrs

characteristic: title


text: MCDB, Yale University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: hermaphrodites

text: Caenorhabditis elegans

text: young adult animals exposed to heat shock

characteristic: strain

text: Heat shock at 32°C for 6 hrs


text: MCDB, Yale University

characteristic: INSDC last update

text: live

text: Generic

text: hermaphrodites

text: Caenorhabditis elegans

text: young adult animals exposed to oxidation

text: Juglone (oxidative stress) 750 μM for 6 hrs


text: MCDB, Yale University

text: live

text: Generic

text: hermaphrodites

text: Caenorhabditis elegans

text: young adult animals exposed to low oxygen condition

text: 0.01% oxygen (hypoxia) for 6 hrs


text: MCDB, Yale University

text: live

text: Generic

text: hermaphrodites

text: Caenorhabditis elegans

text: young adult animals exposed to complete food deprivation

text: Complete food deprivation for 12 hrs


text: MCDB, Yale University

text: live

text: Generic

text: hermaphrodites

text: Caenorhabditis elegans

text: untreated young adult animals (12 hrs)

text: Untreated for 12 hours


text: MCDB, Yale University

text: live

text: Generic

text: hermaphrodites

text: Caenorhabditis elegans

text: young adult animals recovered from heat shock exposure

text: Recovery (23°C for 6 hrs) from heat shock treatment


text: Narry Kim Lab, School of Biological Sciences, Seoul National University

text: live

text: Generic

text: Cervical cancer cells

characteristic: cell line

text: HeLa

characteristic: cell type

text: Homo sapiens

text: G2/M phase

characteristic: phase

text: HeLa_thymidine double block_8 hr after the release


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Cervical cancer cells

text: HeLa

text: Homo sapiens

text: G1 phase

text: HeLa_thymidine double block_10 hr after the release


text: live

text: Generic

characteristic: NCBI submission package

text: Cervical cancer cells

text: HeLa

text: Homo sapiens

text: G1 phase

text: HeLa_thymidine double block_14 hr after the release


text: live

text: Generic

text: Cervical cancer cells

text: HeLa

text: Homo sapiens

text: S phase

text: HeLa_thymidine double block_16 hr after the release


text: live

text: Generic

text: Cervical cancer cells

text: HeLa

text: Homo sapiens

text: S phase

text: HeLa_thymidine double block_18 hr after the release


text: live

text: Generic

text: Cervical cancer cells

text: HeLa

text: Homo sapiens

text: S/G2 phase

text: HeLa_thymidine double block_20 hr after the release


text: University of California

text: live

text: Generic

text: Macaca cyclopis

text: M. cyclopis RRL sequences


Paulinella ovalis genomic DNA

text: Rutgers University

text: live

text: Generic

text: uncultured Paulinella

text: Paulinella ovalis genomic DNA


text: DOE Joint Genome Institute

text: live

text: Generic

text: Wetland Surface Sediment Feb2011 Site B1 Cattail

characteristic: description

text: soil metagenome

characteristic: sample number

text: Generic sample from soil metagenome


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Generic

text: Wetland Surface Sediment Feb2011 Site B1 Bulk

text: soil metagenome

text: Generic sample from soil metagenome


text: Plant Industry, CSIRO

text: live

text: Generic

characteristic: SRA accession

characteristic: ecotype

text: Arabidopsis thaliana

text: C24 methylC

text: Unopened buds

characteristic: tissue

text: C24 methylC


text: Plant Industry, CSIRO

characteristic: INSDC center name

text: live

text: Generic

text: Landsberg erecta

text: Arabidopsis thaliana

characteristic: organism

text: Ler methylC

text: Unopened buds

text: Ler methylC

characteristic: title


text: Plant Industry, CSIRO

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Arabidopsis thaliana

text: C24 x Ler methylC

text: F1 C24 x Ler

characteristic: strain

text: Unopened buds

text: C24 x Ler methylC


text: Plant Industry, CSIRO

text: live

text: Generic

text: Arabidopsis thaliana

text: Ler x C24 methylC

text: F1 LerxC24

text: Unopened buds

text: Ler x C24 methylC


text: Instituto de Ciencias Biologicas, Universidade Federal de Minas Gerais

text: live

text: Generic

text: Fifty T. serrulatus scorpion specimens were milked to stimulate the production of mRNAs in the venom glands. After 2 days, total RNA was extracted and an oligo (dT) cellulose column was used for mRNA purification. The cDNAs were synthesised from using Zap DNA Synthesis Kit (Stratagene). cDNAs longer than 100 bp were selected, cloned into the vector Uni Zap XRTM (Stratagene) at Eco R1/Xho I sites and packing in virus particles of Phage using Gigapack II packing extracts (Stratagene).

text: adult

characteristic: dev-stage

text: venom gland

characteristic: organ

text: Tityus serrulatus

text: female (parthenogenetic animal)

characteristic: sex

text: venom gland

characteristic: tissue-type

text: Venom gland of Tityus serrulatus library

text: pBluescript

characteristic: vector


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Wetland Surface Sediment Feb2011 Site A1 Tule

characteristic: description

text: soil metagenome

text: Generic sample from soil metagenome


SOpA

characteristic: External Id

text: University of Aveiro

text: live

text: Generic

characteristic: SRA accession

text: Berau

characteristic: area

text: Generic

characteristic: biosamplemodel

text: Indonesia

characteristic: country

text: 2008 August

characteristic: date

text: Reef

characteristic: environment

text: Sponge

characteristic: host

text: N 02 degrees 12' 52.3

characteristic: latitude

text: E 118 degrees 35' 34.1

characteristic: longitude

text: marine metagenome

text: Suberites diversicolor

characteristic: species

text: marine metagenome

characteristic: transect


SOpB

text: University of Aveiro

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Berau

text: Generic

text: Indonesia

text: 2008 August

text: Reef

text: Sponge

text: N 02 degrees 12' 52.3

text: E 118 degrees 35' 34.1

text: marine metagenome

characteristic: organism

text: Suberites diversicolor

text: marine metagenome

characteristic: title


SOpC

characteristic: External Id

text: University of Aveiro

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Berau

text: Generic

text: Indonesia

text: 2008 August

text: Reef

text: Sponge

text: N 02 degrees 12' 52.3

text: E 118 degrees 35' 34.1

text: marine metagenome

text: Suberites diversicolor

text: marine metagenome


SKakA

text: University of Aveiro

text: live

text: Generic

text: Berau

characteristic: area

text: Generic

characteristic: biosamplemodel

text: Indonesia

characteristic: country

text: 2008 September

characteristic: date

text: Marine lake

characteristic: environment

text: Sponge

text: N 02 degrees 08' 32.7

text: E 118 degrees 30' 32.9

text: marine metagenome

text: Suberites diversicolor

text: marine metagenome


SKakB

text: University of Aveiro

text: live

text: Generic

text: Berau

text: Generic

text: Indonesia

text: 2008 September

text: Marine lake

text: Sponge

characteristic: host

text: N 02 degrees 08' 32.7

characteristic: latitude

text: E 118 degrees 30' 32.9

characteristic: longitude

text: marine metagenome

text: Suberites diversicolor

characteristic: species

text: marine metagenome

characteristic: transect


SKakC

text: University of Aveiro

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Berau

text: Generic

text: Indonesia

text: 2008 September

text: Marine lake

text: Sponge

text: N 02 degrees 08' 32.7

text: E 118 degrees 30' 32.9

text: marine metagenome

characteristic: organism

text: Suberites diversicolor

text: marine metagenome


SKakD

characteristic: External Id

text: University of Aveiro

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Berau

text: Generic

text: Indonesia

text: 2008 September

text: Marine lake

text: Sponge

text: N 02 degrees 09' 36.5

text: E 118 degrees 31' 44.5

text: marine metagenome

text: Suberites diversicolor

text: marine metagenome

characteristic: title


SMarB

text: University of Aveiro

text: live

text: Generic

characteristic: SRA accession

text: Berau

characteristic: area

text: Generic

characteristic: biosamplemodel

text: Indonesia

characteristic: country

text: 2008 September

characteristic: date

text: Marine lake

text: Sponge

text: N 02 degrees 12' 31.2

text: E 118 degrees 35' 46.7

text: marine metagenome

text: Suberites diversicolor

text: marine metagenome


SMarD

text: University of Aveiro

text: live

text: Generic

text: Berau

text: Generic

text: Indonesia

text: 2008 September

text: Marine lake

characteristic: environment

text: Sponge

characteristic: host

text: N 02 degrees 12' 20.8

characteristic: latitude

text: E 118 degrees 36' 00.4

characteristic: longitude

text: marine metagenome

text: Suberites diversicolor

characteristic: species

text: marine metagenome


COpA

text: University of Aveiro

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Berau

text: Generic

text: Indonesia

text: 2008 August

text: Reef

text: Sponge

text: N 02 degrees 20' 48.9

text: E 118 degrees 07' 50.9

text: marine metagenome

text: Cinachyrella australiensis

text: marine metagenome

characteristic: transect


COpB

characteristic: External Id

text: University of Aveiro

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Berau

text: Generic

text: Indonesia

text: 2008 August

text: Reef

text: Sponge

text: N 02 degrees 20' 48.9

text: E 118 degrees 07' 50.9

text: marine metagenome

characteristic: organism

text: Cinachyrella australiensis

text: marine metagenome


COpC

text: University of Aveiro

text: live

text: Generic

characteristic: SRA accession

text: Berau

characteristic: area

text: Generic

characteristic: biosamplemodel

text: Indonesia

characteristic: country

text: 2008 August

text: Reef

text: Sponge

text: N 02 degrees 05' 07.7

text: E 118 degrees 23' 28.0

text: marine metagenome

text: Cinachyrella australiensis

text: marine metagenome

characteristic: title


COpD

text: University of Aveiro

text: live

text: Generic

text: Berau

text: Generic

text: Indonesia

text: 2008 August

characteristic: date

text: Reef

characteristic: environment

text: Sponge

characteristic: host

text: N 02 degrees 05' 07.7

characteristic: latitude

text: E 118 degrees 23' 28.0

characteristic: longitude

text: marine metagenome

text: Cinachyrella australiensis

text: marine metagenome


CKakB

text: University of Aveiro

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Berau

text: Generic

text: Indonesia

text: 2008 September

text: Marine lake

text: Sponge

text: N 02 degrees 08' 32.7

text: E 118 degrees 30' 32.9

text: marine metagenome

text: Cinachyrella australiensis

characteristic: species

text: marine metagenome


CKakC

characteristic: External Id

text: University of Aveiro

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Berau

text: Generic

text: Indonesia

text: 2008 September

text: Marine lake

text: Sponge

text: N 02 degrees 08' 32.7

text: E 118 degrees 30' 32.9

text: marine metagenome

text: Cinachyrella australiensis

text: marine metagenome

characteristic: transect


CKakD

text: University of Aveiro

text: live

text: Generic

characteristic: SRA accession

text: Berau

characteristic: area

text: Generic

characteristic: biosamplemodel

text: Indonesia

characteristic: country

text: 2008 September

text: Marine lake

text: Sponge

text: N 02 degrees 08' 32.7

text: E 118 degrees 30' 32.9

text: marine metagenome

characteristic: organism

text: Cinachyrella australiensis

text: marine metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Zea mays B73_NM_1

characteristic: description

text: Zea mays

characteristic: sample number

characteristic: strain

text: Generic sample from Zea mays

characteristic: title


text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Tierra del Fuego site OR sample ARG 06_12.3m

text: marine sediment metagenome

text: Generic sample from marine sediment metagenome


characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Baltic Sea site KBA sample SWE 07_21m

text: marine sediment metagenome


Rhizoglyphus robini bacterial community

text: ARO Volcani Center

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Laboratory-reared populations of Rhizoglyphus robini, originally collected from infested bulbs of three plant species: Alium sp., Lilium sp. and Ruscus sp.. the populations were maintained on ground peanuts as food source. from each population, pools of ~250 individuals were collected (three replicates for each population). DNA was extracted using the PowerSoil* DNA Isolation Kit (Mo Bio Laboratories, Inc., California, USA) according to the manufacturer's instructions. Tag-encoded sequencing of 16S rRNA gene fragments (V4-V6) was conducted at the Research and Testing Laboratory (Lubbock, Texas, USA). The different populations are denoted: R for Ruscus; G for Alium; L for Lilium. The population letter is followed by the replicate number (1-3).

text: Rhizoglyphus robini

text: Composition and function of a bacterial community shed light on the pest status of Rhizoglyphus robini


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Svalbard Archipelago station 2 sample NOR 18_50m

text: marine sediment metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: SRA accession

text: King George Island site S1 sample ANT 01_9.5m

text: marine sediment metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: PR soil-derived Feedstock-adapted consortia SG only

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Baltic Sea site KBA sample SWE 12_21m

text: marine metagenome

text: Generic sample from marine metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: King George Island site S2 sample ANT 06_23.45m

text: marine sediment metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Svalbard Archipelago station 1 sample NOR 05_45m

text: marine sediment metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: PR soil-derived Feedstock-adapted consortia SG + Fe

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Cronartium quercuum f. sp. fusiforme

text: Cronartium quercuum f. sp. fusiforme

text: f. sp. fusiforme

text: Generic sample from Cronartium quercuum f. sp. fusiforme


72h Queen

text: Beijing Institute of Genomics Chinese Acad of Sci - Key Lab

text: live

text: Generic

text: Apis mellifera ligustica


Arabidopsis DH: Pool 1

text: UC Davis

text: live

text: Generic

text: There are 96 samples pooled in this lane. These are reduced representation libraries that were constructed using NlaIII as the restriction enzyme. At the 5' end of each read after the restriction recognition site (CATG) there is a five base pair barcode.

text: Arabidopsis thaliana

text: Arabidopsis doubled haploid genotype data: Pool 1


Arabidopsis DH: Pool 2

text: UC Davis

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis doubled haploid genotype data: Pool 2


Arabidopsis DH: Pool 3

text: UC Davis

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis doubled haploid genotype data: Pool 3


72h Worker

text: live

text: Generic

text: Apis mellifera ligustica


Arabidopsis DH: Reseq Pool

text: UC Davis

text: live

text: Generic

text: There are 67 samples pooled in this lane. These are reduced representation libraries that were constructed using NlaIII as the restriction enzyme. At the 5' end of each read after the restriction recognition site (CATG) there is a five base pair barcode. These lines resequenced here are a subset of the original three pools.

text: Arabidopsis thaliana

text: Arabidopsis doubled haploid genotype data: Resequencing pool


96h Queen

text: live

text: Generic

text: Apis mellifera ligustica


96h Worker

text: live

text: Generic

text: Apis mellifera ligustica


text: dbGaP

text: live

text: Generic

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: ARC

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

characteristic: study design

text: Alcoholism

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Sample from a human female participant in the dbGaP study Alcohol Dependence GWAS in European- and African Americans


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ARC

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: male

text: Case-Control

text: Alcoholism

text: Yes

text: Sample from a human male participant in the dbGaP study Alcohol Dependence GWAS in European- and African Americans

characteristic: title


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: biospecimen repository

text: ARC

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Case-Control

text: Alcoholism

text: Alcohol Dependence GWAS in European- and African Americans

text: Yes


text: dbGaP

text: live

text: Generic

characteristic: biospecimen repository sample id

text: ARC

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

characteristic: study design

text: Alcoholism

text: Yes


text: dbGaP

text: live

text: Generic

text: ARC

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Case-Control

characteristic: study name

text: No

characteristic: subject is affected

characteristic: submitted sample id


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: ARC

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Case-Control

text: No

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: Blood

characteristic: body site

text: HVI

text: Blood

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

text: male

text: Case-Control

text: HIV-Resistant People with Hemophilia

text: No

text: Non-tumor DNA sample from Blood of a human male participant in the dbGaP study HIV-Resistant People with Hemophilia


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

text: HVI

text: Blood

text: No

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Case-Control

text: HIV-Resistant People with Hemophilia

text: No

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study HIV-Resistant People with Hemophilia

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Blood

text: HVI

text: Blood

text: No

text: Homo sapiens

text: male

text: Case-Control

characteristic: study design

text: HIV

characteristic: study disease

text: HIV-Resistant People with Hemophilia

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: misha

text: Blood

characteristic: body site

text: HVI

text: Blood

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

text: male

text: Case-Control

text: HIV-Resistant People with Hemophilia

text: No

text: misha

text: misha


characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Targeted Biofilm samples from two redox zones- PC08_64

characteristic: description

text: soil metagenome

characteristic: organism

characteristic: sample number

text: Generic sample from soil metagenome

characteristic: title


text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: Generic

text: Tierra del Fuego site OR sample ARG 05_12.3m

text: marine sediment metagenome

text: Generic sample from marine sediment metagenome


text: DOE Joint Genome Institute

characteristic: INSDC last update

text: live

text: Generic

text: Targeted Biofilm samples from two redox zones- GS09_5

text: soil metagenome

text: Generic sample from soil metagenome


text: ARRIAM

characteristic: INSDC secondary accession

text: live

text: Generic

text: A set of 16S rRNA sequences of bacteria from soil The most saline site of the experiment. Meadow solonchak, Salt lake margin, sparse saltwort pickleweed plant community, Electrical conductivity (mS)&gt;2500

text: Bacteria

text: T1 (Meadow solonchak)


text: ARRIAM

text: live

characteristic: INSDC status

text: Generic

text: Meadow solonchak Transitional zone, orache statice and sheep fescue white orache plant communities, Electrical conductivity (mS)= 1880

text: Bacteria

text: T2 (Meadow solonchak)


text: ARRIAM

text: live

text: Generic

characteristic: SRA accession

text: T2-3 Transitional from solonchak to chestnut soil Transitional zone, sheep fescue meadow grass white worm wood and statice white worm wood white orache plant communities, Electrical conductivity (mS)= 665

text: Bacteria

text: T2_3 (Transitional zone)


text: ARRIAM

text: live

text: Generic

text: Chestnut soil Zone of contact with steppe vege tation, June grass-white worm wood-statice and white worm wood-meadow grass-fringed sage plant communities. Electrical conductivity = 335 ms

text: Bacteria

text: T3 (Chestnut soil)


text: ARRIAM

text: live

text: Generic

text: Chestnut soil Zone of contact with steppe vege tation, mixed herb-grass-fringed sage and June grass-meadow grass-fringed sage plant communities. Electrical conductivity= 40 ms

text: Bacteria

text: T4(Chestnut soil)


text: ARRIAM

text: live

text: Generic

text: Chestnut soil Peripheral zone with prevalence of steppe associations, feather grass-sheep’s fescue plant community. Electrical conductivity = 9 ms

text: Bacteria

text: T5 (Chestnut soil)


NZ

text: ARRIAM

text: live

text: Generic

text: Dark chestnut soil Fifteen year old fallow, absinthe wormwood-lettuce and spurge-lettuce associations

text: Bacteria

text: NZ (Dark chestnut soil)


NC

text: ARRIAM

text: live

text: Generic

text: Dark chestnut soil Virgin land, steppe feather grass

text: Bacteria

text: NC (Dark chestnut soil)


text: DBI, Plant and Soil Sciences, University of Delaware

text: live

text: Generic

text: Ler

characteristic: background

text: hen1-1 mutant

characteristic: genotype/variation

text: Arabidopsis thaliana

text: flower

text: flower

characteristic: tissue

text: Arabidopsis thaliana hen1-1 mutant in Ler background


text: live

text: Generic

text: Ler

text: wildtype

text: Arabidopsis thaliana

text: flower

text: flower

text: Arabidopsis thaliana wildtype Lersberg erecta (Ler)


text: live

text: Generic

text: Col

text: hen1-8 mutant

text: Arabidopsis thaliana

text: flower

text: flower

text: Arabidopsis thaliana hen1-8 mutant in Col backgroud


text: live

text: Generic

text: Col

text: wildtype

text: Arabidopsis thaliana

text: flower

text: flower

text: Arabidopsis thaliana wildtype Columbia (Col)


text: Umass Medical School

text: live

text: Generic

text: Mus musculus


name: Microbacterium laevaniformans (Actinobacteria) strain OR221

text: Oak Ridge National Laboratory

text: live

text: Generic

text: Microbacterium laevaniformans strain OR221 was isolated from subsurface sediments obtained from the Field Research Center (FRC) in Oak Ridge, TN. It was characterized as a bacterium tolerant to heavy metals such as uranium, nickel, cobalt, cadmium, as well as nitrate and low pH.

text: Microbacterium laevaniformans


Dead Sea Pools

text: CU Boulder

text: live

text: Generic

text: hypersaline lake metagenome

text: Dynamics and Persistence of Dead Sea Microbial Populations as Shown by High-Throughput Sequencing of rRNA


text: Steve Baylin, Oncology, Johns Hopkins University

text: live

text: Generic

text: Millipore

characteristic: antibody vendor

text: mesenchymal stem cells (MSCs)

characteristic: cell identity

text: adult stem cell

characteristic: cell type

characteristic: chip antibody

text: Homo sapiens

text: Adult bone marrow MSCs, H3K4Me3 ChIP

text: bone marrow


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: mesenchymal stem cells (MSCs)

text: adult stem cell

text: Homo sapiens

text: Adult bone marrow MSCs, H3K27Me3 ChIP

text: bone marrow


text: live

text: Generic

text: mesenchymal stem cells (MSCs)

text: adult stem cell

text: Homo sapiens

characteristic: organism

text: Adult bone marrow MSCs, input

text: bone marrow

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Millipore

text: osteoblasts

text: differentiated cell

text: Homo sapiens

text: Osteoblasts derived from MSCs, H3K4Me3 ChIP


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: osteoblasts

text: differentiated cell

text: Homo sapiens

text: Osteoblasts derived from MSCs, H3K27Me3 ChIP


text: live

text: Generic

characteristic: SRA accession

text: osteoblasts

text: differentiated cell

text: Homo sapiens

text: Osteoblasts derived from MSCs, input


text: live

text: Generic

text: Millipore

text: osteosarcoma cancer cells

characteristic: cell line

text: osteosarcoma cell line

text: Homo sapiens

text: U2OS cell line, H3K4Me3 ChIP


text: live

text: Generic

text: osteosarcoma cancer cells

text: osteosarcoma cell line

text: Homo sapiens

text: U2OS cell line, H3K27Me3 ChIP


text: live

text: Generic

text: osteosarcoma cancer cells

text: osteosarcoma cell line

text: Homo sapiens

text: U2OS cell line, input


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: Leaf of Solanum lycopersicon cv Heinz


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: root of Solanum lycopersicon cv Heinz


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: flower of Solanum lycopersicon cv Heinz


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: flower bud of Solanum lycopersicon cv Heinz


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: 1cm fruit of Solanum lycopersicon cv Heinz


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: 2cm fruit of Solanum lycopersicon cv Heinz


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: 3cm fruit of Solanum lycopersicon cv Heinz


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: mature green fruit of Solanum lycopersicon cv Heinz


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: breaker fruit of Solanum lycopersicon cv Heinz


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: fruit at 10 days after the breaker stage of Solanum lycopersicon cv Heinz


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum pimpinellifolium

text: immature fruit of Solanum pimpinellifolium


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum pimpinellifolium

text: breaker fruit of Solanum pimpinellifolium


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum pimpinellifolium

text: fruit at 5 days after the breaker stage of Solanum pimpinellifolium


text: University of California, Davis - Comai Lab

text: live

text: Generic

text: Control (0 treatment of sodium azide)

characteristic: description

text: Oryza sativa Japonica Group

text: C


text: Umass Medical School

text: live

text: Generic

text: Mus musculus


text: DOE Joint Genome Institute

text: live

text: Generic

text: Aquilegia glandulosa

text: Aquilegia glandulosa

characteristic: sample number

text: Generic sample from Aquilegia glandulosa


name: Profiling of thermal adaptation of an Antarctic species with transcriptomic data

text: Alfred-Wegener-Institute

text: live

text: Generic

text: Specimens of P. brachycephalum were caught with baited traps during an expedition ANTXV/3 with the RV Polarstern close to the Antarctic Peninsula. The animals were brought to the Alfred Wegener Institute in Bremerhaven and kept under habitat conditions until experimentation. Preparation of a random-primed and normalized cDNA for pyrosequencing was done with pooled total RNA from liver and heart. For further information please refer to Windisch et al 2012.

text: Pachycara brachycephalum

text: sample preparation for a normalized cDNA library of heart and liver RNA of Pachycara brachycephalum


text: DOE Joint Genome Institute

text: live

text: Generic

text: Aquilegia vulgaris

text: Aquilegia vulgaris

text: Generic sample from Aquilegia vulgaris


text: Marine Biological Laboratory

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

characteristic: collection date

characteristic: conductivity

text: USA

characteristic: country

text: 55 cm beneath stream bed

characteristic: depth

text: 55 cm beneath stream bed

characteristic: depth end

text: 55 cm beneath stream bed

characteristic: depth start

text: top 50 m

text: ENVO:freshwater;ENVO:aquatic_habitat;ENVO:water

characteristic: environment

text: Small River Biome

text: Freshwater Habitat

text: Underground Water

text: Toolik Inlet Hyporehic

characteristic: lat

text: 68.625489 / -149.59644

characteristic: lat lon

characteristic: lon

text: freshwater metagenome

characteristic: temp


characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: alkalinity

characteristic: ammonium

text: Generic

characteristic: calcium

characteristic: chlorophyll

text: USA

text: top 50 m

characteristic: dissolved oxygen

text: Small Lake Biome

text: Freshwater Habitat

text: Fresh Water

text: Toolik Lake Epiliminion (Winter)

text: 68.63073 / -149.60615

characteristic: magnesium

characteristic: nitrate

text: freshwater metagenome

characteristic: organism

characteristic: ph

characteristic: phosphate

characteristic: potassium

text: oxic

characteristic: salinity

characteristic: silicate

characteristic: sodium

characteristic: title


characteristic: External Id

text: Medical Genetics, UBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: 3-4 months

characteristic: age

text: Mus musculus

text: female

characteristic: sex

text: Smarcal1+/+ (20oC)-liver

text: Mixed 129SvEv and C57BL/6

characteristic: strain

characteristic: temperature

text: Liver

characteristic: tissue

text: Smarcal1+/+ liver at 20oC- lane 1


text: Medical Genetics, UBC

text: live

text: Generic

characteristic: NCBI submission package

text: 3-4 months

text: Mus musculus

characteristic: organism

text: female

text: Smarcal1+/+ (20oC)-liver

text: Mixed 129SvEv and C57BL/6

text: Liver

text: Smarcal1+/+ liver at 20oC- lane 2


text: Medical Genetics, UBC

text: live

text: Generic

text: 3-4 months

text: Mus musculus

text: female

text: Smarcal1del/del (20oC)-liver

text: Mixed 129SvEv and C57BL/6

text: Liver

text: Smarcal1del/del liver at 20oC- lane 1


text: Medical Genetics, UBC

text: live

text: Generic

text: 3-4 months

text: Mus musculus

text: female

text: Smarcal1del/del (20oC)-liver

text: Mixed 129SvEv and C57BL/6

text: Liver

text: Smarcal1del/del liver at 20oC- lane 2


text: Medical Genetics, UBC

text: live

text: Generic

text: 3-4 months

text: Mus musculus

text: female

text: Smarcal1+/+ (39.5oC)-liver

text: Mixed 129SvEv and C57BL/6

text: Liver

text: Smarcal1+/+ liver at 39.5oC- lane 1


text: Medical Genetics, UBC

text: live

text: Generic

text: 3-4 months

text: Mus musculus

text: female

text: Smarcal1+/+ (39.5oC)-liver

text: Mixed 129SvEv and C57BL/6

text: Liver

text: Smarcal1+/+ liver at 39.5oC- lane 2


text: Medical Genetics, UBC

text: live

text: Generic

text: 3-4 months

text: Mus musculus

text: female

text: Smarcal1del/del (39.5oC)-liver

text: Mixed 129SvEv and C57BL/6

text: Liver

text: Smarcal1del/del liver at 39.5oC- lane 1


text: Medical Genetics, UBC

text: live

text: Generic

text: 3-4 months

text: Mus musculus

text: female

text: Smarcal1del/del (39.5oC)-liver

text: Mixed 129SvEv and C57BL/6

text: Liver

text: Smarcal1del/del liver at 39.5oC- lane 2


text: IGBMC (CNRS/INSERM/UDS)

text: live

text: Generic

text: anti-RAR

characteristic: chip antibody

text: Santa Cruz

characteristic: chip antibody manufacturer

text: Mus musculus

text: murine embryonic stem cells grown as embryoid bodies for 4 days and treated 2 hours with 5 micromolar all trans retinoic acid

text: 2 h

characteristic: time

text: ES cells grown as embryoid bodies

text: RA 2h ChIPSeq

text: all trans retinoic acid

characteristic: treatment


characteristic: External Id

text: IGBMC (CNRS/INSERM/UDS)

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: anti-RAR

text: Santa Cruz

text: Mus musculus

text: murine embryonic stem cells grown as embryoid bodies for 4 days and treated 24 hours with 5 micromolar all trans retinoic acid

text: 24 h

text: ES cells grown as embryoid bodies

text: RA 24h ChIPSeq

characteristic: title

text: all trans retinoic acid


text: IGBMC (CNRS/INSERM/UDS)

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mus musculus

text: 24 h

text: ES cells grown as embryoid bodies

text: RA 24h RNASeq

text: all trans retinoic acid


text: IGBMC (CNRS/INSERM/UDS)

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: murine embryonic stem cells grown as embryoid bodies for 4 days with no retinoic acid treatment

text: ES cells grown as embryoid bodies

text: Control RNASeq

text: control


text: DOE Joint Genome Institute

text: live

text: Generic

text: King George Island site S1 sample ANT 03_9.5m

characteristic: description

text: marine metagenome

characteristic: sample number

text: Generic sample from marine metagenome


text: IBZ, ETH Zurich

text: live

text: Generic

characteristic: NCBI submission package

text: male

characteristic: gender

text: Silene latifolia

text: 10 generation inbred line

characteristic: population

text: male_small flower buds

text: small flower buds

characteristic: tissue


text: IBZ, ETH Zurich

text: live

text: Generic

text: female

text: Silene latifolia

characteristic: organism

text: 10 generation inbred line

text: female_small flower buds

text: small flower buds


text: University of Bari

text: live

text: Generic

text: Lemur catta

text: LBNL-2 (Lemur catta) BAC Library

text: BAC

characteristic: vector


characteristic: External Id

text: University of Bari

text: live

text: Generic

text: Callithrix jacchus

text: male

characteristic: sex

text: CHORI-259 (Callithrix jacchus) BAC Library

text: BAC


text: University of Bari

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Pongo pygmaeus

text: male

text: CHORI-253 (Pongo pygmaeus) BAC Library

text: BAC


text: Laboratory for Computational Biology, Center for Human Genetics, KU Leuven

characteristic: INSDC last update

text: live

text: Generic

characteristic: developmental stage

text: WT

characteristic: genotype/variation

text: FACsorted cells

characteristic: method

text: Mus musculus

text: Nkx2-1-iCre targeted eGFP+ cells

text: Swiss

characteristic: strain

text: telencephalon

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: KO

text: FACsorted cells

text: Mus musculus

text: Nkx2-1-iCre targeted eGFP+ cells

text: Swiss

text: telencephalon


text: live

text: Generic

characteristic: NCBI submission package

text: T1 (1mM treatment of sodium azide)

characteristic: description

text: Oryza sativa Japonica Group


text: live

text: Generic

text: T2 (5mM treatment of sodium azide)

text: Oryza sativa Japonica Group

characteristic: organism


characteristic: External Id

text: live

text: Generic

text: T3 (10mM treatment of sodium azide)

text: Oryza sativa Japonica Group


text: DOE Joint Genome Institute

text: live

text: Generic

text: Aquilegia sibirica

text: Aquilegia flabellata

characteristic: sample number

text: Generic sample from Aquilegia flabellata


text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Generic

text: Aquilegia aurea

text: Aquilegia aurea

text: Generic sample from Aquilegia aurea


text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: Generic

text: Svalbard Archipelago station 2 sample NOR 15_50m

text: marine metagenome

text: Generic sample from marine metagenome


Ayer Hitam Reserve 1

text: Seoul National University

characteristic: INSDC last update

text: live

text: Generic

text: soil metagenome

text: Ayer Hitam Reserve 1


Environmental sample

text: Polar Research Institute of China

text: live

text: Generic

text: Seawater collected in Canada Basin and Kongsfjorden

text: Bacteria

text: Seawater collected from the Arctic


text: DOE Joint Genome Institute

text: live

text: Generic

text: Tierra del Fuego site MC sample ARG 02_11.3m

text: marine metagenome

text: Generic sample from marine metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Baltic Sea site KBA sample SWE 02_21m

text: marine metagenome

text: Generic sample from marine metagenome


Ayer Hitam Reserve 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Ayer Hitam Reserve 2


Batu Cave Reserve 1

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Batu Cave Reserve 1


Batu Cave Reserve 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Batu Cave Reserve 2


Cape Racado Reserve

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Cape Racado Reserve


FRIM Kepong Reserve 1

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: FRIM Kepong Reserve 1


FRIM Kepong Reserve 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: FRIM Kepong Reserve 2


Lemongrass

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Lemongrass


Oil Palm 1

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Oil Palm 1


Oil Palm 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Oil Palm 2


Oil Palm 3

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Oil Palm 3


Oil Palm 4

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Oil Palm 4


Papaya

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Papaya


Pasoh Forest Reserve 1

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Pasoh Forest Reserve 1


Pasoh Forest Reserve 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Pasoh Forest Reserve 2


Meranti Forest Reserve 1

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Meranti Forest Reserve 1


Meranti Forest Reserve 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Meranti Forest Reserve 2


Puchong Grassy Field

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Puchong Grassy Field


Tawau Hills Reserve 1

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Tawau Hills Reserve 1


Tawau Hills Reserve 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Tawau Hills Reserve 2


Sugarcane

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Sugarcane


Tapioca

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Tapioca


Pasture 1

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Pasture 1


Pasture 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Pasture 2


Pasture 3

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Pasture 3


Pasture 4

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Pasture 4


Vegetable Garden

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Vegetable Garden


text: DOE Joint Genome Institute

text: live

text: Generic

text: Targeted Biofilm samples from two redox zones-LI09_3

text: soil metagenome

text: Generic sample from soil metagenome


text: University of Tennessee

text: live

text: Generic

text: Filtered water sample from site EDW-09B-002 (Texas state well #DX-68-23-619B), Girl Scout shallow well (198 m), in the Edwards Aquifer, New Braunfels, Texas, USA.

text: environmental samples

text: Microbial impact on carbonate geochemistry across a changing geochemical gradient


text: University of Tennessee

text: live

text: Generic

text: Filtered water sample from site EDW-09B-001 (Texas state well #DX-68-23-619A), Girl Scout deep well (240 m), in the Edwards Aquifer, New Braunfels, Texas, USA.

text: environmental samples


text: University of Tennessee

text: live

text: Generic

text: Filtered water sample from site EDW-09B-003 (Texas state well #DX-68-23-617), LCRA deep well (226 m), in the Edwards Aquifer, New Braunfels, Texas, USA.

text: environmental samples


text: University of Tennessee

text: live

text: Generic

text: Filtered water sample from site EDW-09B-004 (Texas state well #DX-68-23-618), LCRA shallow well (201 m), in the Edwards Aquifer, New Braunfels, Texas, USA.

text: environmental samples


text: University of Tennessee

text: live

text: Generic

text: Filtered water sample from site EDW-09B-006 (Texas state well #DX-68-23-616B), Paradise Alley deep well (223 m), in the Edwards Aquifer, New Braunfels, Texas, USA.

text: environmental samples


text: University of Tennessee

text: live

text: Generic

text: Filtered water from Comal Springs, spring I, New Braunfels, Texas, USA.

text: environmental samples


text: University of Tennessee

text: live

text: Generic

text: Filtered water sample from site EDW-09B-007 (Texas state well #DX-68-23-616A), Paradise Alley shallow well (173 m), in the Edwards Aquifer, New Braunfels, Texas, USA.

text: environmental samples


text: University of Tennessee

text: live

text: Generic

text: Filtered water sample from site EDW-09B-008 (Texas state well #LR-67-01-814A), San Marcos deep well at Aquarena (213 m), in the Edwards Aquifer, San Marcos, Texas, USA.

text: environmental samples


Banana

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Banana


text: Swiss Institute of Bioinformatics

text: live

text: Generic

text: CD8+ thymocytes

characteristic: cell type

text: Mus musculus

text: CD8+ thymocytes


text: DOE Joint Genome Institute

text: live

text: Generic

text: Targeted Biofilm samples from two redox zones- FS06_10

text: soil metagenome

text: Generic sample from soil metagenome


default sample

text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 20.6 km from the mouth of the stream, collected in October, 2007

text: freshwater metagenome

text: Hinds Creek, the DOE facilities, Oak Ridge, TN


text: Oak Ridge National Laboratory

text: live

text: Generic

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 20.6 km from the mouth of the stream, collected in October, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 23.4 km from the mouth of the stream, collected in October, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 23.4 km from the mouth of the stream, collected in October, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 20.6 km from the mouth of the stream, collected in November, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 6.3 km from the mouth of the stream, collected in November, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 6.3 km from the mouth of the stream, collected in November, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 13.8 km from the mouth of the stream, collected in November, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 13.8 km from the mouth of the stream, collected in November, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 23.4 km from the mouth of the stream, collected in November, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 23.4 km from the mouth of the stream, collected in November, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 12.3 km from the mouth of the stream, collected in November, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 3.9 km from the mouth of the stream, collected in November, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 3.9 km from the mouth of the stream, collected in November, 2007

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 20.6 km from the mouth of the stream, collected in February, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 20.6 km from the mouth of the stream, collected in February, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 23.4 km from the mouth of the stream, collected in February, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 23.4 km from the mouth of the stream, collected in February, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 20.6 km from the mouth of the stream, collected in March, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 20.6 km from the mouth of the stream, collected in March, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 23.4 km from the mouth of the stream, collected in March, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 23.4 km from the mouth of the stream, collected in March, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 20.6 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 20.6 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 6.3 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 6.3 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 13.8 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 13.8 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 23.4 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 23.4 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 12.3 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 12.3 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 3.9 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 3.9 km from the mouth of the stream, collected in May, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 20.6 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 20.6 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 6.3 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 6.3 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 13.8 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 13.8 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 23.4 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 23.4 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 12.3 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 12.3 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 3.9 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 3.9 km from the mouth of the stream, collected in July, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 20.6 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 20.6 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 6.3 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 6.3 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 13.8 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 13.8 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 23.4 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 23.4 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 12.3 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 12.3 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, midchannel, 3.9 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


text: Oak Ridge National Laboratory

text: live

text: Generic

text: stream sediments, near bank, 3.9 km from the mouth of the stream, collected in September, 2008

text: freshwater metagenome


Rat pineal gland - ZT7

text: NIH-NICHD-David Klein

text: live

text: Generic

text: Total RNA was extracted from day (ZT 7) rat pineal glands and used in the illumina small RNA (v1.5) sequencing protocol.

text: Rattus norvegicus

text: Rat pineal gland - ZT7; small RNA component


Rat pineal gland - ZT19

text: NIH-NICHD-David Klein

text: live

text: Generic

text: Total RNA was extracted from day (ZT 19) rat pineal glands and used in the illumina small RNA (v1.5) sequencing protocol.

text: Rattus norvegicus

text: ineal gland - ZT1; small RNA component


text: DOE Joint Genome Institute

text: live

text: Generic

text: Targeted Biofilm samples from two redox zones- PC08_66

text: soil metagenome

text: Generic sample from soil metagenome


text: Universidade Federal de Sao Paulo

text: live

text: Generic

text: Triatoma infestans

text: anterior midgut

characteristic: tissue-type

text: Triatoma infestans midgut uninfected

text: phage

characteristic: vector


text: Universidade Federal de Sao Paulo

text: live

text: Generic

text: Triatoma infestans

text: anterior midgut

text: Triatoma infestans midgut infected

text: phage


text: University of Agricultural Sciences

text: live

text: Generic

text: GPU- 28

characteristic: cultivar

text: Finger millet seedlings (20 days old) were exposed to different levels of drought stress (20, 40, 60 and 100% field capacities) by controlled irrigation. RNA isolated from leaf tissues experiencing different levels of drought were pooled and stress specific cDNA library was constructed using Stratagene ZAP-cDNA synthesis kit.

text: E.coli (XL1-Blue MRF')

characteristic: lab-host

text: Eleusine coracana

text: EcoRI

text: XhoI

text: 20 day old seedling

text: Finger millet drought stressed leaf cDNA library

text: Uni-ZAP XR cloning vector


text: The Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences

text: live

text: Generic

text: Manihot esculenta

text: hermaphrodite

characteristic: sex

text: leaf and root

text: Cassava (Manihot esculenta) full-length cDNA library

characteristic: title

text: Plasmid

text: pMD-Lib


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Manihot esculenta subsp. flabellifolia

text: hermaphrodite

text: leaf and root

text: Cassava (Manihot esculenta subsp. flabellifolia) full-length cDNA library

text: Plasmid

text: pMD-Lib


text: Santa Catarina State University (UDESC)

text: live

text: Generic

characteristic: NCBI submission package

text: germination

characteristic: dev-stage

text: Phaseolus vulgaris

text: leaf

text: Bean tolerance to cold at germination stage


text: Santa Catarina State University (UDESC)

text: live

text: Generic

text: flowering

text: Phaseolus vulgaris

characteristic: organism

text: leaf

text: Bean tolerance to dry at flowering stage


characteristic: External Id

text: Sichuan Agricultural University

text: live

text: Generic

text: CN17, MY11

text: Prepared following the Suppression Subtractive Hybridization method using CN17 in senescence stage as tester and MY11 at same period as driver

characteristic: description

text: senescence stage

text: Triticum aestivum

text: hermaphrodite

text: leaves

text: CN17 delay senescence period SSH cDNA library

text: Plasmid


text: UCSF

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: MOPS

characteristic: medium

text: Escherichia coli str. K-12 substr. MG1655

text: E. coli MG1655

characteristic: strain

characteristic: substrain

text: E. coli MG1655 rep1

text: Ribosome-protected mRNA, Ribosome footprint sample digested with 60 units of micrococcal nuclease per A260 absorbance

characteristic: treatment


text: UCSF

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: MOPS

text: E. coli MG1655

text: E. coli MG1655 rep2


text: UCSF

text: live

text: Generic

text: MOPS

text: Escherichia coli BW25113

text: pJW1422, pSC101-G9

characteristic: plasmid

text: E. coli OlacZ

text: BW25113 w/ orthogonal ribosome and orthogonal lacZ

text: E. coli OlacZ (orthogonal ribosomes and orthogonal lacZ mRNA)

characteristic: title


text: UCSF

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: MOPS

text: Escherichia coli

text: E. coli recoded ompF

text: BJW9 w/ recoded ompF

text: E. coli recoded ompF (recoded ompF gene)


text: Zhiping Weng, Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School

text: live

text: Generic

characteristic: NCBI submission package

text: Drosophila melanogaster

text: w1118 ovary unox

text: ovary

characteristic: tissue

text: Total small RNAs from w1118, ovary, un-oxidized


characteristic: External Id

text: live

text: Generic

text: Drosophila melanogaster

characteristic: organism

text: uap56 mutant ovary unox

text: uap56 mutant

text: ovary

text: Total small RNAs from uap56 mutant, ovary, un-oxidized


characteristic: INSDC center name

text: live

text: Generic

text: Drosophila melanogaster

text: uap56 mutant overy ox

text: uap56 mutant

text: ovary

text: Total small RNAs from uap56 mutant, ovary, oxidized


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Targeted Biofilm samples from two redox zones- AS07_7

characteristic: description

text: soil metagenome

characteristic: sample number

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: SRA accession

text: Boechera stricta LTM

text: Boechera stricta

text: LTM

characteristic: strain

text: Generic sample from Boechera stricta


text: IUE

text: live

text: Generic

text: 454 pyrosequencing of V1-V3 hypervariable regions in rRNA genes was used to explore microbial communities from 22 activated sludge samples and 13 river sediment samples. Totally, 470627 effective reads were generated from these 35 samples. These reads were assigned into different taxonomies by using RDP classifier. Besides, Cluster analysis, PCoA, correlation analysis was also used to assess the beta-diversity among all these samples.

text: activated sludge metagenome

text: Pyrosequencing result of the actived sludge and river sediment sample


text: DOE Joint Genome Institute

text: live

text: Generic

text: Permafrost metatranscriptome cDNA-P1

text: soil metagenome

text: Generic sample from soil metagenome


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Amanita thiersii SKay4041

text: Amanita thiersii Skay4041

text: Generic sample from Amanita thiersii Skay4041


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: culture-collection

text: Phytophthora cinnamomi

text: Phytophthora cinnamomi var. cinnamomi

text: CBS 144.22

text: Generic sample from Phytophthora cinnamomi var. cinnamomi

text: cinnamomi

characteristic: variety


text: Hellenic Centre for Marine Research

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Head kidney of the European sea bass control fish

text: Dicentrarchus labrax

text: Characterization of European Sea Bass transcripts by RNA SEQ after Oral Vaccine against V. anguillarum


text: Hellenic Centre for Marine Research

text: live

text: Generic

text: Head kidney of the European sea bass after oral vaccination

text: Dicentrarchus labrax

characteristic: title


text: Hellenic Centre for Marine Research

text: live

characteristic: INSDC status

text: Generic

text: Gut of the European sea bass control fish

text: Dicentrarchus labrax


CCA sequencing set 2

text: National Cancer Centre Singapore

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

characteristic: biosamplemodel

text: human bile duct tumor from Opisthorchis viverrini related cholangiocarcinoma (CCA) patient paired tumor set 2. Clinical information on the patients evaluated in this study was obtained from the Srinagarind Hospital, Khonkean Thailand. Informed consent was obtained from each subjects and the Human Research Ethics Committee, Khon Kaen University approved our research protocol (HE471214). Clinicopathological features of CCA patients including age, sex, histological grading, and pTNM stage (AJCC 6th Edition) were evaluated retrospectively by reviewing the medical charts and pathological records and compared with mutational status.

characteristic: disease

text: Homo sapiens

text: human bile duct tumor from Opisthorchis viverrini related cholangiocarcinoma (CCA) patient-Tumor Samples


Sample BHU-1095

characteristic: External Id

text: Central Drug Research Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Splenic aspirate, BHU-1095, from a patient of Visceral leishmaniasis(VL) admited to Kala Azar Medical Research Centre(KAMRC), Muzaffarpur(Bihar) India, was collected and adapted to culture. Genomic DNA was isolated.

text: Leishmania donovani

text: Indian Leishmania donovani clinical isolate


Conomon Pool

text: Comav upv

characteristic: INSDC center name

text: live

text: Generic

text: Cucumis melo var. conomon

characteristic: organism

text: Conomon Pool


Agathis 1

text: Seoul National University

characteristic: INSDC secondary accession

text: live

text: Generic

text: soil metagenome

text: Agathis 1


Agathis 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Agathis 2


Agathis 3

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Agathis 3


text: DOE Joint Genome Institute

text: live

text: Generic

text: Caldicellulosiruptor obsidiansis OB47

characteristic: description

text: Caldicellulosiruptor obsidiansis OB47

characteristic: sample number

text: Generic sample from Caldicellulosiruptor obsidiansis OB47


Dipterocarpus 1

text: Seoul National University

text: live

text: Generic

characteristic: SRA accession

text: soil metagenome

text: Dipterocarpus 1


Agrestis Africanus

text: Comav upv

text: live

text: Generic

text: The sample was prepared from 5 African genotypes, most belonging to the variety agrestis characterized by its small inedible fruits (&lt;5 cm) (Additional file 1), non-climacteric with no sugar and no aroma, and one belonging to the newly reported African variety tibish

text: Cucumis melo subsp. agrestis

text: Agrestis africanus Pool


Dipterocarpus 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Dipterocarpus 2


Dipterocarpus 4

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Dipterocarpus 4


Dyera 1

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Dyera 1


Dyera 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Dyera 2


text: DOE Joint Genome Institute

text: live

text: Generic

text: Miscanthus giganteus

text: Miscanthus x giganteus

text: Generic sample from Miscanthus x giganteus


Dyera 3

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Dyera 3


Gnetum 1

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Gnetum 1


Gnetum 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Gnetum 2


Gnetum 3

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Gnetum 3


Transect 1

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 1


Agrestis Acidulus Pool

text: Comav upv

text: live

text: Generic

text: The sample consisted of RNA from 6 genotypes, mostly Asian, of the agrestis and acidulus varieties, with traits similar to the first pool, but with medium-size acidic fruits

text: Cucumis melo subsp. agrestis

text: Agrestis Acidulus Pool


Transect 2

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 2


Momordica Dudaim

text: Comav upv

text: live

text: Generic

text: The fourth RNA pool included 7 representatives of three varieties, previously classified in the subsp. melo (dudaim and flexuosus) and agrestis (momordica), but often considered intermediate between both subspecies on the basis of molecular studies (Stepansky et al., 1999; Monforte et al., 2003; Esteras et al., 2009). This group includes cultivated snakemelons consumed immature as cucumbers in Southern Europe, Northern Africa, and Middle East, one known oriental cultivar of mango melon used as ornamental, and snap melons cultigens grown in India.

text: Cucumis melo

text: Momordica Dudaim Pool


Transect 3

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 3


Transect 4

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 4


Transect 5

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 5


Transect 6

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 6


Transect 7

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 7


Transect 8

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 8


Transect 9

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 9


Transect 10

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 10


Transect 11

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 11


Inodorus Pool

text: Comav upv

text: live

text: Generic

text: The group was prepared from 15 Spanish cultivars of the inodorus group, including many market classes popular in Eastern and Southern Europe and Brasil (ie, “Amarillo’, Rochet’, ‘Tendral’), and other less know types representing the variability of the Spanish melon landraces

text: Cucumis melo var. inodorus

text: Inodorus Pool


Transect 12

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 12


Transect 13

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 13


Transect 14

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 14


Transect 15

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 15


Transect 16

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 16


Transect 17

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 17


Transect 18

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 18


Cantalupo Pool

text: Comav upv

text: live

text: Generic

text: The pool includes 8 cantalupensis commercial varieties and 5 cantalupensis breeding lines belonging to the Charentais market class from Semillas Fito. This group comprises the botanical varieties cantalupensis and reticulatus, which include many economically important cultivars from Europe, Asia and America

text: Cucumis melo var. cantalupo

text: cantalupo Pool


Transect 19

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 19


Transect 20

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 20


Transect 21

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 21


Transect 22

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 22


T111 Pool

text: Comav upv

text: live

text: Generic

text: This group includes piel de sapo, including the cultivar T111 and 5 additional breeding lines provided by Semillas Fito commercial cultivars

text: Cucumis melo var. inodorus

text: T111 Pool


Transect 23

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 23


Transect 24

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 24


Coxiella burnetii M44 sample 1

text: Centers for Disease Control

text: live

text: Generic

text: The sample was purified Coxiella burnetii strain M44 (RSA459). The strain was originally isolated from human blood in 1945. The isolation was by passage through a guinea pig. The sample that was sequenced was purified after growth in embryonated chicken eggs, and the DNA extracted using a Qiagen protocol.

text: Coxiella burnetii

text: Coxiella burnetii M44 sample 1


text: Department of Parasitology, Sichuan Agricultural University

text: live

text: Generic

text: adult

characteristic: developmental stage

text: Dirofilaria immitis

text: both male and female

characteristic: sex

text: whole body

text: whole body

characteristic: tissue

text: Small RNAs from adult Dirofilaria immitis_both male and female_whole body


Transect 25

text: Seoul National University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: soil metagenome

text: Transect 25


text: live

characteristic: INSDC status

text: Generic

text: adult stage

characteristic: development stage

text: Taenia multiceps

text: hermaphrodite

text: whole body

text: whole body

text: small RNAs from Taenia multiceps

characteristic: title


Melo Pool

text: Comav upv

text: live

text: Generic

characteristic: NCBI submission model

text: The pool was formed by 11 melon cultivars representing other melon varieties, adana, chandalak, and ameri, most of which show intermediate characteristics between the two main economically important groups, cantalupensis and inodorus, and some inodorus cultivars from Eastern Europe, Western and Central Asia;

text: Cucumis melo subsp. melo

text: Melo Pool


Transect 26

characteristic: External Id

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 26


Transect 27

text: Seoul National University

text: live

text: Generic

characteristic: NCBI submission package

text: soil metagenome

text: Transect 27


Transect 28

text: Seoul National University

characteristic: INSDC center name

text: live

text: Generic

text: soil metagenome

text: Transect 28


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Shigella sp. co-culture

characteristic: organism

text: co-culture

characteristic: strain

text: Shigella sp. co-culture


Transect 29

text: Seoul National University

characteristic: INSDC secondary accession

text: live

text: Generic

text: soil metagenome

text: Transect 29


Transect 30

text: Seoul National University

text: live

text: Generic

text: soil metagenome

text: Transect 30


Starting soil

text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from a mixed temperate broadleaf forest in Central Germany (51*04' N 10*30' E, about 350 m a.s.l) from a depth of 0 - 10 cm

characteristic: description

text: environmental samples

text: forest soil environmental sample


text: Emory

text: live

text: Generic

characteristic: SRA accession

text: BEAF [Bushey AM, Ramos E, Corces VG. Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. Genes Dev 2009 Jun 1;23(11):1338-50. PMID: 19443682]

characteristic: custom antibody

text: embryo 0-8h

text: ChIP

characteristic: fraction

text: Drosophila melanogaster

text: embryo

text: BEAF ChIP in Drosophila melanogaster


text: Emory

text: live

text: Generic

text: embryo 0-8h

characteristic: developmental stage

text: input

text: Drosophila melanogaster

text: embryo

text: input in Drosophila melanogaster