Brain HuFNSC01

text: Gene Expression Omnibus

text: live

text: Generic

text: Keith Ligon, Harvard

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Fetal Brain, HuFNSC01

characteristic: donor age

text: Disease Free

characteristic: donor health status

characteristic: donor id

text: female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Twin of HuFNSC02

characteristic: note

text: Homo sapiens

text: Brain

characteristic: tissue type

text: Generic sample from Homo sapiens


Brain HuFNSC02

status: PUBLIC

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Keith Ligon, Harvard

tag: attribute

text: Primary Tissue

text: Fetal Brain, HuFNSC02

characteristic: description

text: Disease Free

text: female

text: genomic DNA

text: Twin of HuFNSC01

text: Homo sapiens

characteristic: organism

text: Brain

text: Generic sample from Homo sapiens

characteristic: title


name: Neurospheres, Ganglionic Eminence Derived HuFNSC01

text: Gene Expression Omnibus

text: live

text: Generic

text: Keith Ligon, Harvard

characteristic: biomaterial provider

text: Primary Cell Culture

characteristic: biomaterial type

characteristic: cell type

text: Neurocult+EGF+FGF

characteristic: culture conditions

text: Neurosphere Cultured Cells, Ganglionic Eminence Derived, HuFNSC01

characteristic: donor age

text: Disease Free

characteristic: donor health status

characteristic: donor id

text: female

text: genomic DNA

text: Twin of HuFNSC02

text: Homo sapiens

text: Generic sample from Homo sapiens


name: Neurospheres, Ganglionic Eminence Derived HuFNSC02

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Keith Ligon, Harvard

text: Primary Cell Culture

text: Neurocult+EGF+FGF

text: Neurosphere Cultured Cells, Ganglionic Eminence Derived, HuFNSC02

text: Disease Free

text: female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Twin of HuFNSC01

characteristic: note

text: Homo sapiens

text: Generic sample from Homo sapiens


Neurospheres, Cortex Derived HuFNSC01

text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Keith Ligon, Harvard

text: Primary Cell Culture

text: Neurospheres, Cortex Derived

text: Neurocult+EGF+FGF

text: Neurosphere Cultured Cells, Cortex Derived, HuFNSC01

text: Disease Free

text: female

text: genomic DNA

text: Twin of HuFNSC02

text: Homo sapiens

text: Generic sample from Homo sapiens


Neurospheres, Cortex Derived HuFNSC02

text: Gene Expression Omnibus

text: live

text: Generic

text: Keith Ligon, Harvard

characteristic: biomaterial provider

text: Primary Cell Culture

characteristic: biomaterial type

text: Neurospheres, Cortex Derived

characteristic: cell type

text: Neurocult+EGF+FGF

text: Neurosphere Cultured Cells, Cortex Derived, HuFNSC02

characteristic: description

text: Disease Free

text: female

text: genomic DNA

text: Twin of HuFNSC01

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens

characteristic: title


Breast Stem Cell RM080

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: 46, XX

characteristic: KARYOTYPE

text: Generic

text: Thea Tlsty Lab UCSF

text: Primary Cell

text: Stem Cell

text: Breast, Stem Cells, RM080

text: 33 years

characteristic: donor age

text: African-American

characteristic: donor ethnicity

text: Disease Free

characteristic: donor health status

characteristic: donor id

text: female

characteristic: markers

text: genomic DNA

text: Homo sapiens

characteristic: parity

text: Generic sample from Homo sapiens


Brain Germinal Matrix HuFGM02

text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Costello Lab UCSF

text: Primary Tissue

text: Brain, Germinal Matrix, HuFGM02

text: Disease Free

text: male

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Brain-Germinal Matrix

characteristic: tissue type

text: Generic sample from Homo sapiens


Penis, Foreskin, Keratinocyte skin01

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: 46, XY

text: Generic

characteristic: SRA accession

text: SFVAMC Dermatology

characteristic: biomaterial provider

text: Primary Cell Culture

characteristic: biomaterial type

text: Keratinocyte

characteristic: cell type

text: Invitrogen 154CF + HKGS + .07mM Ca

characteristic: culture conditions

text: Penis, Foreskin, Keratinocyte Primary Cells skin01

characteristic: description

text: Neonate

text: Disease Free

text: male

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens

characteristic: title


Breast Luminal Epi RM080

text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: 46, XX

characteristic: KARYOTYPE

text: Generic

text: Thea Tlsty Lab UCSF

text: Primary Cell

text: Luminal Epithelial Cell

text: Breast, Luminal Epithelial Cells, RM080

text: 33 years

characteristic: donor age

text: African-American

characteristic: donor ethnicity

text: Disease Free

characteristic: donor health status

characteristic: donor id

text: female

characteristic: markers

text: genomic DNA

text: Homo sapiens

characteristic: parity

text: Generic sample from Homo sapiens


CD4 Memory TC009

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: 46, XX

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Weiss Lab UCSF

characteristic: biomaterial provider

text: Primary Cell

text: O+

characteristic: blood type

text: CD4 Memory

text: CD4 Memory Primary Cells, TC009

text: 30 years

text: Caucasian

text: Disease Free

text: female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


CD4 Memory TC014

text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: 46, XY

characteristic: KARYOTYPE

text: Generic

text: Weiss Lab UCSF

text: Primary Cell

characteristic: biomaterial type

text: CD4 Memory

characteristic: cell type

text: CD4 Memory Primary Cells, TC014

characteristic: description

text: 29 years

text: Asian/Hawaiian/Eskimo

text: Disease Free

text: male

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens

characteristic: title


CD4 Naive TC014

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: 46, XY

text: Generic

text: Weiss Lab UCSF

text: Primary Cell

text: CD4 Naive Primary Cell

text: CD4 Naive Primary Cells, TC014

characteristic: donor age

text: Asian/Hawaiian/Eskimo

characteristic: donor ethnicity

text: Disease Free

characteristic: donor health status

characteristic: donor id

text: male

text: CD4+, CD45RA+

characteristic: markers

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


CD8 Naive TC014

text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: 46, XY

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Weiss Lab UCSF

characteristic: biomaterial provider

text: Primary Cell

text: CD8 Naive Primary Cell

text: CD8 Naive Primary Cells, TC014

text: Asian/Hawaiian/Eskimo

text: Disease Free

text: male

characteristic: donor sex

text: CD8+, CD45RA+

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


PBMC TC014

text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: 46, XY

characteristic: KARYOTYPE

text: Generic

text: Weiss Lab UCSF

text: Primary Cell

characteristic: biomaterial type

text: PBMC

characteristic: cell type

text: Peripheral Blood Mononuclear Primary Cells, TC014

characteristic: description

text: Asian/Hawaiian/Eskimo

text: Disease Free

text: male

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


Brain Dorsal neocortex HuFNSC03

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: Keith Ligon/Harvard

text: Primary Cell Culture

text: Brain

text: HuFNSC03 Brain - Dorsal neocortex, paracentral region, full thickness

characteristic: donor age

text: Disease Free

characteristic: donor health status

text: HuFNSC-T

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


Asclepias syriaca (4885) fc167s1

text: Oregon State University

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: This Asclepias syriaca individual was sampled from a natural population occurring in Ogle County, Illinois [Fishbein 4885 (OKLA)].

text: Asclepias syriaca

text: Asclepias syriaca Fishbein 4885


text: Penn State University - dePamphilis Lab

characteristic: INSDC last update

text: live

text: Generic

text: Total RNA from Orobanche aegyptiaca, vegetative structures - leaves and stems.

text: Phelipanche aegyptiaca

text: Orobanche aegyptiaca vegetative structures - leaves and stems


text: Penn State University - dePamphilis Lab

characteristic: INSDC secondary accession

text: live

text: Generic

text: Total RNA from Orobanche aegyptiaca reproductive structures - floral buds (up to anthesis)

text: Phelipanche aegyptiaca


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome


OARI.PO

text: Baylor College of Medicine

text: live

text: Generic

text: Poll Dorset

characteristic: breed

text: Ovis aries breed Poll Dorset

text: Ovis aries

text: Sample from Ovis aries


text: Penn State University - dePamphilis Lab

text: live

text: Generic

text: Total RNA from Striga hermonthica leaves and stems, vegetative structures.

text: Striga hermonthica

text: Striga hermonthica vegetative structures - leaves and stems


text: Penn State University - dePamphilis Lab

text: live

text: Generic

text: Total RNA from Striga hermonthica reproductive structures - floral buds (up to anthesis).

text: Striga hermonthica


text: Gene Expression Omnibus

text: live

text: Generic

text: ES cell HUES_6-1

characteristic: batch

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Harvard University Embryonic Stem Cells

text: undifferentiated

characteristic: differentiation stage

text: HUES 6

characteristic: line

text: embrionic stem cell

characteristic: lineage

text: KSR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: Harvard University

text: Cell Line

text: H7 (WA07) embryonic stem cells; NIH Approval # NIHhESC-10-0061

characteristic: description

text: undifferentiated

text: embrionic stem cell

text: KSR

text: genomic DNA

text: Homo sapiens

characteristic: organism

characteristic: passage

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ES cell HUES_6-2

text: Harvard University

text: Cell Line

text: Harvard University Embryonic Stem Cells

text: undifferentiated

text: HUES 6

text: embrionic stem cell

text: KSR

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: undifferentiated

characteristic: differentiation stage

text: embryonic stem cell

text: 10% KOSR (Invitrogen)

text: genomic DNA

text: Homo sapiens

text: female

characteristic: sex


name: Neural progenitors derived from ES H9 cell

characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: ArunA Biomedical, Athens, GA

text: Primary Cell Culture

characteristic: cell type

text: Medium: AB2(^TM) Neural Medium with ANS(^TM) supplement plus bFGF (20ng/mL) and LIF (10 ng/mL); Differentiation Method: NA

characteristic: culture conditions

text: neuronal progenitors derived from H9 (WA09) human stem cells

text: healthy

characteristic: donor health status

text: Donor of H9 cells

characteristic: donor id

text: female

characteristic: donor sex

text: >90% nestin(+) and <5% Oct-4(+)

characteristic: markers

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Harvard University

text: Cell Line

text: H9 (WA09) embryonic stem cells; NIH Approval # NIHhESC-10-0062

characteristic: description

text: undifferentiated

characteristic: line

text: embrionic stem cell

characteristic: lineage

text: 10% KOSR (Invitrogen)

characteristic: medium

text: genomic DNA

text: Homo sapiens

characteristic: organism

characteristic: passage

text: female

text: Generic sample from Homo sapiens


UW DS # 14724

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: UW

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: surgery

characteristic: collection method

text: Primary fetal lung tissue

text: 85 days

characteristic: donor age

text: UW H23266

text: female

text: genomic DNA

text: Homo sapiens

text: lung

characteristic: tissue depot

text: Fetal lung

characteristic: tissue type

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ES cell HUES_48-1

characteristic: batch

text: Harvard University

text: Cell Line

text: HUES48 stem cells

characteristic: cell type

text: Harvard University Embryonic Stem Cells

characteristic: description

text: undifferentiated

characteristic: differentiation stage

text: embrionic stem cell

text: KSR

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ES cell HUES_64-1

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

text: Harvard University Embryonic Stem Cells

text: undifferentiated

characteristic: line

text: embrionic stem cell

characteristic: lineage

text: KSR

characteristic: medium

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rikshospitalet University Hospital

text: Primary Cell Culture

characteristic: biomaterial type

text: chondrogenic dif cells

text: Medium: NA; Differentiation Method: alginate hydrogel scaffold (SR Herlofsen et al, Tissue Eng Part A. 2011)

characteristic: culture conditions

text: chondrocytes derived via in vitro culture from mesenchymal stem cells

text: healthy

characteristic: donor health status

characteristic: donor id

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rush University Medical Center

text: Primary Tissue

text: post-mortem

characteristic: collection method

text: human post mortem brain region from a non Alzheimer's donor

characteristic: description

characteristic: donor age

text: female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: brain

characteristic: tissue depot

text: Inferior Temporal Lobe

characteristic: tissue type

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rush University Medical Center

characteristic: biomaterial provider

text: Primary Tissue

text: post-mortem

text: female

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: brain

text: Cingulate Gyrus

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: Rush University Medical Center

text: Primary Tissue

characteristic: biomaterial type

text: post-mortem

characteristic: donor id

text: female

text: genomic DNA

text: Homo sapiens

text: brain

text: Mid Frontal Lobe

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rush University Medical Center

text: Primary Tissue

text: post-mortem

characteristic: collection method

characteristic: description

characteristic: donor age

text: female

text: genomic DNA

text: Homo sapiens

text: brain

text: Anterior Caudate

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: Rush University Medical Center

text: Primary Tissue

text: post-mortem

text: female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: brain

characteristic: tissue depot

text: Hippocampus Middle

characteristic: tissue type

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rush University Medical Center

characteristic: biomaterial provider

text: Primary Tissue

text: post-mortem

text: female

text: genomic DNA

text: Homo sapiens

text: brain

text: Substantia Nigra

text: Generic sample from Homo sapiens


UW DS # 14751

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: UW

text: Primary Tissue

characteristic: biomaterial type

text: surgery

text: Primary fetal lung tissue

text: 85 days

text: UW H23266

characteristic: donor id

text: female

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: lung

text: Fetal lung

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: MGH Pathology

text: Primary Tissue

text: surgery

characteristic: collection method

text: normal adult liver

characteristic: description

text: genomic DNA

text: Homo sapiens

text: liver

text: Adult Liver

text: Generic sample from Homo sapiens

characteristic: title


UW DS # 14803

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: UW

text: Primary Tissue

text: surgery

text: Primary fetal brain tissue

text: 96 days

characteristic: donor age

text: UW H23284

text: female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: brain

characteristic: tissue depot

text: Fetal brain

text: Generic sample from Homo sapiens


UW DS # 14809

text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: UW

text: Primary Tissue

text: surgery

text: Primary fetal lung tissue

text: 96 days

text: UW H23284

text: female

text: genomic DNA

text: Homo sapiens

text: lung

text: Fetal lung

characteristic: tissue type

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: Harvard University

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: surgery

text: Nuclei derived from crude preps of adipose tissue

characteristic: donor id

text: female

text: genomic DNA

text: Homo sapiens

text: abdomen

text: Adipose Nuclei

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rikshospitalet University Hospital

text: Primary Cell Culture

text: BM-MSC

characteristic: cell type

text: Medium: DMEM/FBS; Differentiation Method: adherence

characteristic: culture conditions

text: bone marrow was aspirated from the iliac crest, isolated by density gradient and adhesion to plastic, and expanded in monolayer culture, containing 10% FBS

characteristic: description

text: healthy

characteristic: donor health status

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: batch

text: Harvard University

text: Cell Line

text: undifferentiated

characteristic: differentiation stage

characteristic: line

text: embrionic stem cell

characteristic: lineage

text: KSR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Harvard University

characteristic: biomaterial provider

text: Primary Cell Culture

characteristic: biomaterial type

text: HUES_1p29 EB_d16

text: Medium: 10% KOSR (Invitrogen); Differentiation Method: NA

text: embryoid body culture derived from HUES1 human embrionic stem cells

text: healthy

text: Donor of HUES1 cells

characteristic: donor id

text: female

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: Harvard University

text: Cell Line

text: human primary fibroblasts

characteristic: description

text: undifferentiated

characteristic: differentiation stage

text: Fib 20

text: mesoderm

text: 10% KOSR (Invitrogen)

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Harvard University

text: Cell Line

text: human primary fibroblasts

text: undifferentiated

text: 19 Fib

characteristic: line

text: mesoderm

characteristic: lineage

text: 10% KOSR (Invitrogen)

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: female

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Harvard University

characteristic: biomaterial provider

text: Primary Cell Culture

characteristic: biomaterial type

text: HUES_45p21 EB_d16

characteristic: cell type

characteristic: culture conditions

text: embryoid body culture derived from HUES45 human embrionic stem cells

text: healthy

characteristic: donor health status

text: Donor of HUES45 cells

text: female

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: Harvard University

text: Cell Line

text: human primary fibroblasts

characteristic: description

text: undifferentiated

characteristic: differentiation stage

text: mesoderm

text: 10% KOSR (Invitrogen)

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Generic sample from Homo sapiens


H9p65 EB_d16

text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Harvard University

text: Primary Cell Culture

text: H9p65 EB_d16

text: embryoid body culture derived from H9 human embrionic stem cells

text: healthy

text: Donor of H9 cells

characteristic: donor id

text: female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


hiPS_20b p49 KOSR iPS

text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: induced pluripotent stem cells 20b

characteristic: cell type

text: IPS cell line 20b

text: undifferentiated

text: hiPS_20b p49 KOSR iPS

characteristic: line

text: induced pluripotent cells

characteristic: lineage

text: 10% KOSR (Invitrogen)

characteristic: medium

text: genomic DNA

text: Homo sapiens

characteristic: passage

text: male

text: Generic sample from Homo sapiens


hiPS_20b p49 TeSR iPS

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: Harvard University

text: Cell Line

text: induced pluripotent stem cells 20b

text: IPS cell line 20b

characteristic: description

text: undifferentiated

characteristic: differentiation stage

text: hiPS_20b p49 TeSR iPS

text: induced pluripotent cells

text: TeSR

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: Harvard University

text: Primary Cell Culture

text: HUES_3p22 EB_d16

characteristic: culture conditions

text: embryoid body culture derived from HUES3 human embrionic stem cells

text: healthy

characteristic: donor health status

text: Donor of HUES3 cells

characteristic: donor id

text: male

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: human primary fibroblasts

text: undifferentiated

characteristic: line

text: mesoderm

characteristic: lineage

text: 10% KOSR (Invitrogen)

characteristic: medium

text: genomic DNA

text: Homo sapiens

characteristic: passage

text: male

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Harvard University

text: Cell Line

text: induced pluripotent 27b stem cell line

characteristic: description

text: undifferentiated

characteristic: differentiation stage

text: induced pluripotent cells

text: 10% KOSR (Invitrogen)

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: Harvard University

text: Cell Line

text: induced pluripotent 11c stem cell line

text: undifferentiated

text: hESC 11c p23

text: induced pluripotent cells

text: 10% KOSR (Invitrogen)

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: induced pluripotent 27e stem cell line

text: undifferentiated

characteristic: line

text: induced pluripotent cells

characteristic: lineage

text: 10% KOSR (Invitrogen)

text: genomic DNA

text: Homo sapiens

text: female

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Harvard University

text: Primary Cell Culture

text: HUES_6p30 EB_d16

characteristic: cell type

characteristic: culture conditions

text: embryoid body culture derived from HUES6 human embrionic stem cells

text: healthy

characteristic: donor health status

text: Donor of HUES6 cells

characteristic: donor id

text: female

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Harvard University

text: Cell Line

text: Harvard University Embryonic Stem Cells

characteristic: description

text: undifferentiated

characteristic: differentiation stage

text: embrionic stem cell

text: 10% KOSR (Invitrogen)

characteristic: medium

text: genomic DNA

text: Homo sapiens

characteristic: organism

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Harvard University

characteristic: biomaterial provider

text: Primary Cell Culture

characteristic: biomaterial type

text: H1p38 EB_d16

text: embryoid body culture derived from H1 human embrionic stem cells

text: healthy

text: Donor of H1 cells

text: male

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: Harvard University

text: Cell Line

text: Harvard University Embryonic Stem Cells

text: undifferentiated

characteristic: line

text: embrionic stem cell

characteristic: lineage

text: 10% KOSR (Invitrogen)

text: genomic DNA

text: Homo sapiens

text: female

text: Generic sample from Homo sapiens


text: Joint Genome Institute, U.S. Department of Energy

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Methylocystis sp. ATCC 49242

characteristic: description

text: Methylocystis sp. ATCC 49242

text: ATCC 49242

characteristic: strain

text: Generic sample from Methylocystis sp. ATCC 49242


Expression Profiling of Manduca sexta

text: The University of Oklahoma

characteristic: INSDC first public

text: live

text: Generic

text: We report the development of a simple method to discover immunity-related genes partly based on changes in their relative transcript abundances in M. sexta larvae before and after a bacterial injection and characterize genes based on their tissue-preferential expression patterns in fat body and hemocytes. Instead of relying on a priori knowledge of the genome, our approach contributes to future genome annotation, cDNA cloning, and protein identification in this insect and it also provides useful leads for functional elucidation of unknown defense proteins in this biochemical model insect. More importantly, this method is applicable to gene discovery and study of process/tissue-related transcriptome changes in all non-model species with no known genome sequences.

text: Manduca sexta

characteristic: organism

text: Pyrosequencing-based expression profiling and identification of differentially regulated genes from Manduca sexta, a lepidopteran model insect with unknown genome sequence


text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: Vibrio cholerae C6706

characteristic: sample name

text: Generic sample from Vibrio cholerae C6706


Lane 8 of MIC seq

text: UC Davis Genome Center Bioinformatics Core

text: live

text: Generic

characteristic: SRA accession

text: Tetrahymena thermophila

text: T. thermophila micronucleus sequence from Illumina lane 8


text: University of Calgary

text: live

text: Generic

text: Aerobic sample collected from surface water of an inactive pond in the Athabasca region of northern Alberta. The sample was filtered and the cells collected on the filter was subjected to DNA extraction using Fast DNA spin Kit for soil.

text: hydrocarbon metagenome


text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 2 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and the three subsamples were mixed together as a unique sample which was then sequenced.

text: hydrocarbon metagenome

text: Microbial community from the 2 m depth of an inactive oil sand taililngs pond in 2009


text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 2.4 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

text: hydrocarbon metagenome

text: Microbial community from 2.4 mbs of an inactive oil sand taililngs pond in 2009


text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 3 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

text: hydrocarbon metagenome

text: Microbial community from 3 mbs of an inactive oil sand taililngs pond in 2009


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

characteristic: host sex

text: No

characteristic: is tumor

text: antecubital fossa

characteristic: isolation source

characteristic: molecular data type

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Human metagenome DNA sample from antecubital fossa of a male participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: HMP

text: male

text: No

text: antecubital fossa

text: human metagenome

characteristic: organism

text: Prospective Longitudinal Cohort

text: Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency

characteristic: title


text: dbGaP

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

characteristic: host sex

text: No

text: popliteal fossa

text: human metagenome

text: Prospective Longitudinal Cohort

text: Human metagenome DNA sample from popliteal fossa of a male participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


text: dbGaP

text: live

text: Generic

text: DNA

text: HMP

text: male

text: No

characteristic: is tumor

text: volar forearm

characteristic: isolation source

characteristic: molecular data type

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: Human metagenome DNA sample from volar forearm of a male participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: HMP

text: male

text: No

text: nare

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: submitter handle

text: Human metagenome DNA sample from nare of a male participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


text: dbGaP

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: HMP

text: female

text: No

text: antecubital fossa

text: human metagenome

characteristic: organism

text: Prospective Longitudinal Cohort

text: Human metagenome DNA sample from antecubital fossa of a female participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

text: HMP

text: female

characteristic: host sex

text: No

characteristic: is tumor

text: popliteal fossa

characteristic: isolation source

characteristic: molecular data type

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

text: Human metagenome DNA sample from popliteal fossa of a female participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: HMP

text: female

text: No

text: volar forearm

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: submitted sample id

characteristic: submitted subject id

text: Human metagenome DNA sample from volar forearm of a female participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


text: dbGaP

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: HMP

text: female

text: No

text: nare

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: submitter handle

text: Human metagenome DNA sample from nare of a female participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 4.6 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub- samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

characteristic: description

text: hydrocarbon metagenome

characteristic: organism

text: Microbial community from 4.6 mbs of an inactive oil sand taililngs pond in 2009

characteristic: title


characteristic: External Id

text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 6 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

text: hydrocarbon metagenome

text: Microbial community from 6 mbs of an inactive oil sand taililngs pond in 2009


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Geneva

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: DS-HLB

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

text: Geneva

text: Non-tumor DNA sample from Blood of a human male participant in the dbGaP study Genome-Wide associations of Lung Health Study (LHS)


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: Geneva

text: Blood

text: DS-HLB

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

text: Genome-Wide associations of Lung Health Study (LHS)

characteristic: submitted sample id

characteristic: submitted subject id

text: Geneva


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: Geneva

characteristic: biospecimen repository

text: Blood

text: DS-HLB

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: female

text: Prospective Longitudinal Cohort

text: Geneva

characteristic: submitter handle

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study Genome-Wide associations of Lung Health Study (LHS)

characteristic: title


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Geneva

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: DS-HLB

text: Yes

characteristic: is technical control

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design

text: Geneva


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: Geneva

text: Blood

text: DS-HLB

text: Yes

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

characteristic: study name

characteristic: submitted sample id

text: Geneva


characteristic: External Id

text: University of Calgary

text: live

text: Generic

characteristic: SRA accession

text: Anaerobic sample collected from 7.6 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

characteristic: description

text: hydrocarbon metagenome

characteristic: organism

text: Microbial community from 7.6 mbs of an inactive oil sand taililngs pond in 2009

characteristic: title


text: University of Calgary

characteristic: INSDC center name

text: live

text: Generic

text: Anaerobic sample collected from 9 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

text: hydrocarbon metagenome

text: Microbial community from 9 mbs of an inactive oil sand taililngs pond in 2009


text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 11 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

text: hydrocarbon metagenome

text: Microbial community from 11 mbs of an inactive oil sand taililngs pond in 2009


text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 12 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

text: hydrocarbon metagenome

text: Microbial community from 12 mbs of an inactive oil sand taililngs pond in 2009


text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 14 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

text: hydrocarbon metagenome

text: Microbial community from 14 mbs of an inactive oil sand taililngs pond in 2009


text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 15 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample.

text: hydrocarbon metagenome

text: Microbial community from 15 mbs of an inactive oil sand taililngs pond in 2009


text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 20 mbs of an inactive pond in the Athabasca region of northern Alberta. Threesub- samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

text: hydrocarbon metagenome

text: Microbial community from 20 mbs of an inactive oil sand taililngs pond in 2009


text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 25 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

text: hydrocarbon metagenome

text: Microbial community from 25 mbs of an inactive oil sand taililngs pond in 2009


text: University of Calgary

text: live

text: Generic

text: Anaerobic sample collected from 29 mbs of an inactive pond in the Athabasca region of northern Alberta. Three sub-samples of approximately 0.5 g of tailings were used for DNA extraction by Fast DNA spin kit for soil. A first PCR round of 25 cycles was done to each separate subsample using 16 S universal primers 926Fw/1392R. The product of this PCR was used as the DNA template for a second PCR round of 25 cycles using reverse bar-coded primers. The resulting DNA was cleaned with Qiagen PCR purification kit and mixed together as a unique sample and sequenced.

text: hydrocarbon metagenome

text: Microbial community from 29 mbs of an inactive oil sand taililngs pond in 2009


text: University of Calgary

text: live

text: Generic

text: Sample taken from 2 mbs of an inactive oil sand tailings pond with the aim of optimizing DNA extraction process. It is the first time that 454 pyrosequencing is used to study the microbial diversity in oil sand tailings ponds, therefore there was not a pre-established protocol that would allow an optimal representation of the actual community inhabiting tailings ponds. The Fast DNA spin kit for soil was used varying the time of bead beating to 30 seconds.

text: hydrocarbon metagenome

text: oil sand tailing sample from 2 mbs subjected to 30 seconds of bead beating during DNA extraction protocol


text: University of Calgary

text: live

text: Generic

text: Sample taken from 2 mbs of an inactive oil sand tailings pond with the aim of optimizing DNA extraction process. It is the first time that 454 pyrosequencing is used to study the microbial diversity in oil sand tailings ponds,therefore there was not a pre-established protocol that would allow an optimal representation of the actual community inhabiting tailings ponds. The Fast DNA spin kit for soil was used varying the time of bead beating to 60 seconds.

text: hydrocarbon metagenome

text: oil sand tailing sample 2 mbs subjected to 60 seconds of bead beating for DNA extraction


text: University of Calgary

text: live

text: Generic

text: Sample taken from 2 mbs of an inactive oil sand tailings pond with the aim of optimizing DNA extraction process. It is the first time that 454 pyrosequencing is used to study the microbial diversity in oil sand tailings ponds,therefore there was not a pre-established protocol that would allow an optimal representation of the actual community inhabiting in tailings ponds. The Fast DNA spin kit for soil was used varying the time of bead beating to 90 seconds.

text: hydrocarbon metagenome

text: oil sand tailing sample 2 mbs subjected to 90 seconds of bead beating for DNA extraction


text: University of Calgary

text: live

text: Generic

text: Sample taken from 2 mbs of an inactive oil sand tailings pond with the aim of optimizing DNA extraction process. It is the first time that 454 pyrosequencing is used to study the microbial diversity in oil sand tailings ponds,therefore there was not a pre-established protocol that would allow an optiamal representation of the actual community inhabiting tailings ponds. The Fast DNA spin kit for soil was used without any variation of the original kit protocol.

text: hydrocarbon metagenome

text: oil sand tailing sample 2 mbs subjected to 40 seconds of bead beating for DNA extraction


text: University of Calgary

text: live

text: Generic

text: Sample taken from 2 mbs of an inactive oil sand tailings pond with the aim of optimizing DNA extraction process. It is the first time that 454 pyrosequencing is used to study the microbial diversity in oil sand tailings ponds, therefore there was not a pre-established protocol that would allow an optimal representation of the actual community inhabiting tailings ponds. The Fast DNA spin kit for soil was used as it is in the protocol plus GTC to decrease DNA binding to clay particles.

text: hydrocarbon metagenome

text: oil sand tailing sample 2 mbs subjected to 40 seconds of bead beating and Guanidine thiocyanate (GTC) for DNA extraction


text: University of California - Davis, Drosophila Population Genomics Project

text: live

text: Generic

text: Drosophila melanogaster


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 2 week-old WIK zebrafish (Danio rerio), leading with MID-barcode ACGAGTGCGT

text: Danio rerio


0-4cm bsf

text: Univerity of Oslo

text: live

text: Generic

characteristic: collection date

text: USA: California, Santa Barbara

characteristic: country

characteristic: depth

text: Tonya Seep (34.4 N 119.866667 W) is located in the Coal Oil Point seep field offshore Santa Barbara, California, USA. Tonya Seep is primarily a single 2 m diameter pit with many vents inside that rapidly coalesce into a single plume. There was a high content of hydrocarbons and tar in the sediments.

text: 34.4 N 119.866667 W

characteristic: lat-lon

text: marine sediment metagenome

text: marine sediment metagenome: 0-4cm bsf


10-15cm bsf

text: Univerity of Oslo

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: USA: California, Santa Barbara

text: 34.4 N 119.866667 W

text: marine sediment metagenome

text: marine sediment metagenome: 10-15cm bsf


text: Cleveland Clinic Foundation

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: human epithelial colorectal adenocarcinoma cells


name: MSMA-continuously flooded rhizosphere (2008)

text: Texas A&M University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: M-CF (MSMA-continuous flood): These plots were amended with monosodium methylarsenate (MSMA) and had soil-As concentrations of ~25 mg kg-1. The plots were continuously flooded and had a water depth of ~10-cm until one week before harvest in 2008. Equal quantities of community DNA from each of three field-level replicates were composited into one sample per treatment and sequenced for 16S rRNA.

text: uncultured bacterium

text: Arkansas rice rhizosphere and root plaques


name: MSMA-intermittently flooded rhizosphere (2008)

text: Texas A&M University

text: live

text: Generic

text: M-IF (MSMA-intermittent flood): These plots were amended with monosodium methylarsenate (MSMA) but were exposed to intermittent flooding. The plots were flooded and allowed to dry until surface cracking was evident and were then re-flooded. This irrigation scheme continued for the entire 2008 growing season. Equal quantities of community DNA from each of three field-level replicates were composited into one sample per treatment and sequenced for 16S rRNA.

text: uncultured bacterium


name: Unamended-continuously flooded rhizosphere (2008)

text: Texas A&M University

text: live

text: Generic

text: U-CF (Unamended-continuous flood): These plots had not been exposed to any As-containing products for at least the 20 years and had soil-As concentrations of ~5 mg kg-1. The plots were continuously flooded and had a water depth of ~10-cm until one week before harvest in 2008. Equal quantities of community DNA from each of three field-level replicates were composited into one sample per treatment and sequenced for 16S rRNA.

text: uncultured bacterium


text: Texas A&M University

text: live

text: Generic

text: U-IF(Unamended-intermittent flood): These plots had not been exposed to any As-containing products for at least the 20 years and received an intermittent flooding treatment. The plots were flooded and allowed to dry until surface cracking was evident and were then re-flooded. This irrigation scheme continued for the entire 2008 growing season. Equal quantities of community DNA from each of three field-level replicates were composited into one sample per treatment and sequence for 16S rRNA.

text: uncultured bacterium


name: Unamended-intermittently flooded rhizosphere (2008)

text: Texas A&M University

text: live

text: Generic

text: U-IF(Unamended-intermittent flood): These plots had not been exposed to any As-containing products for at least the 20 years and received an intermittent flooding treatment. The plots were flooded and allowed to dry until surface cracking was evident and were then re-flooded. This irrigation scheme continued for the entire 2008 growing season. Equal quantities of community DNA from each of three field-level replicates were composited into one sample per treatment and sequenced for 16S rRNA.

text: uncultured bacterium


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome


name: MSMA-continuously flooded root plaque (replicate 1 of 3)

text: Texas A&M University

text: live

text: Generic

text: M-CF-root plaque (MSMA-continuous flood): Root plaque materials were collected from a series of plots having a history of monosodium methylarsenate (MSMA)amendment and soil As concentrations of ~25 mg kg-1. The plots were continuously flooded and had a water depth of ~10-cm until one week before harvest in 2008. Community DNA was collected from adherent root plaque material and sequenced for 16S rRNA. This sample represents the materials collected from one of three replicate plots.

text: uncultured bacterium


name: MSMA-continuously flooded root plaque (replicate 2 of 3)

text: Texas A&M University

text: live

text: Generic

text: uncultured bacterium


name: MSMA-continuously flooded root plaque (replicate 3 of 3)

text: Texas A&M University

text: live

text: Generic

text: uncultured bacterium


name: MSMA-intermittently flooded root plaque (replicate 1 of 3)

text: Texas A&M University

text: live

text: Generic

text: M-IF-root plaque (MSMA-intermittent flood): Root plaque materials were collected from a series of plots having a history of monosodium methylarsenate (MSMA)amendment and soil As concentrations of ~25 mg kg-1. The plots were flooded and allowed to dry until surface cracking was evident and were then re-flooded. This irrigation scheme continued for the entire 2008 growing season. Community DNA was collected from adherent root plaque material and sequenced for 16S rRNA. This sample represents the materials collected from one of three replicate plots.

text: uncultured bacterium


name: MSMA-intermittently flooded root plaque (replicate 2 of 3)

text: Texas A&M University

text: live

text: Generic

text: uncultured bacterium


name: MSMA-intermittently flooded root plaque (replicate 3 of 3)

text: Texas A&M University

text: live

text: Generic

text: uncultured bacterium


name: Unamended-continuously flooded root plaque (replicate 1 of 3)

text: Texas A&M University

text: live

text: Generic

text: U-CF-root plaque (Unamended-continuous flood): Root plaque materials were collected from a series of plots that had not been exposed to any As-containing products for at least the 20 years and had soil-As concentrations of ~5 mg kg-1. The plots were continuously flooded and had a water depth of ~10-cm until one week before harvest in 2008. Community DNA was collected from adherent root plaque material and sequenced for 16S rRNA. This sample represents the materials collected from one of three replicate plots.

text: uncultured bacterium


name: Unamended-continuously flooded root plaque (replicate 2 of 3)

text: Texas A&M University

text: live

text: Generic

text: uncultured bacterium


name: Unamended-continuously flooded root plaque (replicate 3 of 3)

text: Texas A&M University

text: live

text: Generic

text: uncultured bacterium


name: Unamended-intermittently flooded root plaque (replicate 1 of 3)

text: Texas A&M University

text: live

text: Generic

text: U-IF-root plaque (Unamended-intermittent flood): Root plaque materials were collected from a series of plots that had not been exposed to any As-containing products for at least the 20 years and had soil-As concentrations of ~5 mg kg-1. The plots were flooded and allowed to dry until surface cracking was evident and were then re-flooded. This irrigation scheme continued for the entire 2008 growing season. Community DNA was collected from adherent root plaque material and sequenced for 16S rRNA. This sample represents the materials collected from one of three replicate plots.

text: uncultured bacterium


name: Unamended-intermittently flooded root plaque (replicate 2 of 3)

text: Texas A&M University

text: live

text: Generic

text: uncultured bacterium


name: Unamended-intermittently flooded root plaque (replicate 3 of 3)

text: Texas A&M University

text: live

text: Generic

text: uncultured bacterium


text: LMI, NHLBI, NIH

text: live

text: Generic

text: IgG

characteristic: antibody

text: Th1 cell

characteristic: cell type

text: Mus musculus

text: Th1 cell

text: BALB/c

characteristic: strain

text: Input DNA (mouse)

text: 2 rounds priming

characteristic: treatment


characteristic: External Id

text: LMI, NHLBI, NIH

text: live

text: Generic

characteristic: SRA accession

text: Th1 cell

text: Mus musculus

characteristic: organism

text: Th1 cell

text: BALB/c

text: STAT4_ChIPSeq (mouse)

text: 2 rounds priming


text: LMI, NHLBI, NIH

characteristic: INSDC center name

text: live

text: Generic

text: Th1 cell

text: Mus musculus

text: Th1 cell

text: BALB/c

text: STAT5A_ChIPSeq (mouse)

characteristic: title

text: 2 rounds priming


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Th1 cell

text: Mus musculus

text: Th1 cell

text: BALB/c

text: STAT5B_ChIPSeq (mouse)

text: 2 rounds priming


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Mus musculus

text: T cell

text: STAT5A_control_ChIPSeq (mouse)

text: control


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Mus musculus

text: T cell

text: STAT5A_IL2_ChIPSeq (mouse)


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Mus musculus

text: T cell

text: STAT5B_control_ChIPSeq (mouse)

text: control


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Mus musculus

text: T cell

text: STAT5B_IL2_ChIPSeq (mouse)


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Homo sapiens

text: T cell

text: STAT1_control_ChIPSeq (human)

text: control


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Homo sapiens

text: T cell

text: STAT1_IFNg_ChIPSeq (human)

text: IFNg


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Homo sapiens

text: T cell

text: STAT4_control_ChIPSeq (human)

text: control


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Homo sapiens

text: T cell

text: STAT4_IL12_ChIPSeq (human)


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Homo sapiens

text: T cell

text: STAT5A_control_ChIPSeq (human)

text: control


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Homo sapiens

text: T cell

text: STAT5A_IL2_ChIPSeq (human)


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Homo sapiens

text: T cell

text: STAT5B_control_ChIPSeq (human)

text: control


text: LMI, NHLBI, NIH

text: live

text: Generic

text: T cell

text: Homo sapiens

text: T cell

text: STAT5B_IL2_ChIPSeq (human)


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome


text: Friedrich Miescher Institute for Biomedical Research

text: live

text: Generic

text: anti-REST (Santa Cruz, #H-290)

text: Embryonic Stem Cells (ESCs)

text: wild type

characteristic: genotype

text: Mus musculus

text: Embryonic Stem Cells (ESCs) wildtype


text: live

text: Generic

text: anti-H3K27me3 (Millipore,#07-449)

text: Embryonic Stem Cells (ESCs)

text: RESTko

text: Mus musculus

text: Embryonic Stem Cells (ESCs) RESTko

text: RESTko (Black Agouti 129)

text: ES_RESTko_H3K27me3_biological_replicate_a


text: live

text: Generic

text: anti-H3K27me3 (Millipore,#07-449)

text: Embryonic Stem Cells (ESCs)

text: RESTko

text: Mus musculus

text: Embryonic Stem Cells (ESCs) RESTko

text: RESTko (Black Agouti 129)

text: ES_RESTko_H3K27me3_biological_replicate_b


text: live

text: Generic

text: anti-REST (Santa Cruz, #H-290)

text: Neuronal Progenitor (NP) Cells

text: wild type

text: Mus musculus

text: Neuronal Progenitor (NP) Cells wildtype


text: live

text: Generic

text: anti-H3K27me3 (Millipore,#07-449)

text: Neuronal Progenitor (NP) Cells

text: RESTko

text: Mus musculus

text: Neuronal Progenitor (NP) Cells RESTko

text: RESTko (Black Agouti 129)

text: NP_RESTko_H3K27me3_biological_replicate_a


text: live

text: Generic

text: anti-H3K27me3 (Millipore,#07-449)

text: Neuronal Progenitor (NP) Cells

text: RESTko

text: Mus musculus

text: Neuronal Progenitor (NP) Cells RESTko

text: RESTko (Black Agouti 129)

text: NP_RESTko_H3K27me3_biological_replicate_b


text: live

text: Generic

text: anti-REST (Santa Cruz, #H-290)

text: Embryonic Stem Cells (ESCs)

text: wild type

text: Mus musculus

text: Embryonic Stem Cells (ESCs) wildtype

text: Input


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Invtrogen, monoclonal antibody ST3-5G7

text: Dendritic Cell

text: Mus musculus

text: Dendritic Cell in Spleen

text: control


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Invtrogen, monoclonal antibody ST3-5G7

text: Dendritic Cell

text: Mus musculus

text: Dendritic Cell in Spleen


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Invtrogen, monoclonal antibody ST3-5G7

text: Dendritic Cell

text: Mus musculus

text: Dendritic Cell in Spleen

text: IL-21 and GM-CSF


text: LMI, NHLBI, NIH

text: live

text: Generic

text: R&D systems, anti-stat 5B serum PA-ST5B

text: Dendritic Cell

text: Mus musculus

text: Dendritic Cell in Spleen

text: control


text: LMI, NHLBI, NIH

text: live

text: Generic

text: R&D systems, anti-stat 5B serum PA-ST5B

text: Dendritic Cell

text: Mus musculus

text: Dendritic Cell in Spleen


text: LMI, NHLBI, NIH

text: live

text: Generic

text: R&D systems, anti-stat 5B serum PA-ST5B

text: Dendritic Cell

text: Mus musculus

text: Dendritic Cell in Spleen

text: IL-21 and GM-CSF


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Escherichia coli DEC14B

text: Escherichia coli DEC14B


text: Broad Institute

text: live

text: Generic

text: Vibrio cholerae C6706

characteristic: sample name

text: Generic sample from Vibrio cholerae C6706


characteristic: INSDC first public

text: live

text: Generic

text: Escherichia coli DEC14A

text: Escherichia coli DEC14A


text: University of Calgary

characteristic: INSDC last update

text: live

text: Generic

text: hydrocarbon metagenome


characteristic: INSDC secondary accession

text: live

text: Generic

text: Escherichia coli DEC14C

text: Escherichia coli DEC14C


text: Institute for Genomics and Systems Biology, University of Chicago

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody name

characteristic: developmental stage

text: iso1 (y; bw cn sp)

characteristic: fly type

text: White Lab

characteristic: manufacturer

text: Drosophila melanogaster

text: E8-16h_KW3-h-D1_ChIPSeq_1 and 2


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: GFP

text: transgenic

text: White Lab

text: Drosophila melanogaster

text: EcR_mF3d_GFP_ChIPSeq_1 and 2


characteristic: External Id

text: live

text: Generic

text: transgenic

text: Drosophila melanogaster


text: live

text: Generic

characteristic: SRA accession

text: iso1 (y; bw cn sp)

text: White Lab

text: Drosophila melanogaster

text: E16-24h_KW4-Fer3-D1_ChIPSeq_1 and 2


text: live

text: Generic

text: iso1 (y; bw cn sp)

text: Drosophila melanogaster

characteristic: organism


characteristic: INSDC center name

text: live

text: Generic

text: anti-cbt

text: iso1 (y; bw cn sp)

text: Paricio Lab

text: Drosophila melanogaster

text: E16-24h_anti-cbt_ChIPSeq_1 and 2


text: live

text: Generic

text: iso1 (y; bw cn sp)

text: Irvine Lab

text: Drosophila melanogaster

text: E0-4_Yki-91_ChIPSeq_1 and 2

characteristic: title


text: live

text: Generic

text: Drosophila melanogaster


text: live

text: Generic

text: exd-GFP

text: transgenic

text: Irvine Lab

text: Drosophila melanogaster

text: E16-24h_13T_exd-GFP_ChIPSeq_1 and 2


text: live

text: Generic

text: WPP

text: iso1 (y; bw cn sp)

text: White Lab

text: Drosophila melanogaster

text: WPP


text: live

text: Generic

text: WPP

text: iso1 (y; bw cn sp)

text: Drosophila melanogaster

text: WPP


text: live

text: Generic

text: transgenic

text: White Lab

text: Drosophila melanogaster

text: E0-12_Hr4_GFP_ChIPSeq_1 and 2


text: live

text: Generic

characteristic: catalog

text: WPP

text: iso1 (y; bw cn sp)

text: Upstate-Millipore

text: Drosophila melanogaster

text: WPP

text: WPP_K27me3_ChIPSeq_1 and 2


text: live

text: Generic

text: core

text: BRC

text: iso1 (y; bw cn sp)

text: Lepesant lab

text: Drosophila melanogaster

text: BRC

text: BRC_core_ChIPSeq_1 and 2


text: live

text: Generic

text: BRC

text: iso1 (y; bw cn sp)

text: Drosophila melanogaster

text: BRC


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome


text: Yale University

text: live

text: Generic

text: germ line and somatic cells

characteristic: cell type

text: Adult

text: Drosophila melanogaster

text: ovaries

characteristic: strain

text: ovaries

characteristic: tissue

text: Wild type RNA-seq


text: Yale University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: germ line and somatic cells

text: Adult

text: Drosophila melanogaster

text: ovaries

text: ovaries

text: Yb mutant RNA-seq


text: live

characteristic: INSDC status

text: Generic

text: Escherichia coli DEC14D

text: Escherichia coli DEC14D


text: live

text: Generic

text: Escherichia coli DEC15D

text: Escherichia coli DEC15D


text: University of Washington

text: live

text: Generic

text: cultured cell-line

characteristic: description

text: Drosophila melanogaster

text: Drosophila melanogaster Kc167 cell-line


text: live

text: Generic

text: Escherichia coli DEC15A

text: Escherichia coli DEC15A


text: live

text: Generic

text: Escherichia coli DEC15B

text: Escherichia coli DEC15B


text: live

text: Generic

text: Escherichia coli DEC12E

text: Escherichia coli DEC12E


text: live

text: Generic

text: Escherichia coli DEC15C

text: Escherichia coli DEC15C


text: University of Calgary

text: live

text: Generic

text: Oil sand outcrops enrichments were set up and studied with the objective of microbial community analysis and bitumen biodegradation using 16S pyrotag sequencing.

text: hydrocarbon metagenome

text: Determination of the microbial community composition of bitumen biodegradation microcosms using 16S rRNA based pyrosequencing techniques.


text: University of Calgary

text: live

text: Generic

text: Oil sands samples were collected at different locations and depth with the objective of microbial community analysis using 16S pyrotag sequencing.

text: hydrocarbon metagenome

text: Determination of the microbial community composition found in Alberta oil sands at different depths using 16S rRNA based pyrosequencing techniques.


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 2 week-old WIK zebrafish (Danio rerio), leading with MID-barcode ACGCTCGACA

text: Danio rerio


text: Institute of bioorganic chemistry of the Russian Academy of Sciences

text: live

text: Generic

text: Homo sapiens

text: PBMC collected from Ankylosing spondylitis patient before hematopoietic stem cell transplantation (HSCT)


text: live

text: Generic

text: Homo sapiens

text: PBMC collected from Ankylosing spondylitis patient 3 month after hematopoietic stem cell transplantation (HSCT)


text: live

text: Generic

text: Homo sapiens

text: PBMC collected from Ankylosing spondylitis patient 10 month after hematopoietic stem cell transplantation (HSCT)


text: University of Stirling

text: live

text: Generic

text: Alnus glutinosa

text: Alnus glutinosa


text: live

text: Generic

text: Shigella sonnei 3226-85

text: Shigella sonnei 3226-85


VAC Virus

text: NIAID

text: live

text: Generic

text: Vaccinia virus

text: Vaccinia Virus


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.3-04192010

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Actinomyces sp oral taxon 178 str. F0338

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft29.2x;341

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: oral cavity

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Actinomyces sp. oral taxon 178 F0338

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-146

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Actinomyces sp. oral taxon 178 str. F0338


characteristic: External Id

text: The University of Chicago

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Neonatal piglet #79 cecal microbiota, milk diet, age 21 days.

characteristic: description

text: gut metagenome

characteristic: organism

text: Piglet 79 cecal microbiota, milk diet, age 21 days, MID4

characteristic: title


text: The University of Chicago

text: live

text: Generic

text: Neonatal piglet #80 cecal microbiota, milk diet, age 21 days.

text: gut metagenome

text: Piglet 80 cecal microbiota, milk diet, age 21 days, MID5


text: The University of Chicago

text: live

text: Generic

text: Neonatal piglet #81 cecal microbiota, milk diet, age 21 days.

text: gut metagenome

text: Piglet 81 cecal microbiota, milk diet, age 21 days, MID6


text: The University of Chicago

text: live

text: Generic

text: Neonatal piglet #82 cecal microbiota, milk diet, age 21 days

text: gut metagenome

text: Piglet 82 cecal microbiota, milk diet, age 21 days, MID7


text: The University of Chicago

text: live

text: Generic

text: Neonatal piglet #112 cecal microbiota, formula diet, age 21 days

text: gut metagenome

text: Piglet 112 cecal microbiota, formula diet, age 21 days, MID9


text: The University of Chicago

text: live

text: Generic

text: Neonatal piglet #114 cecal microbiota, formula diet, age 21 days

text: gut metagenome

text: Piglet 114 cecal microbiota, formula diet, age 21 days, MID10


text: The University of Chicago

text: live

text: Generic

text: Neonatal piglet #115 cecal microbiota, formula diet, age 21 days

text: gut metagenome

text: Piglet 115 cecal microbiota, formula diet, age 21 days, MID11


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.0-01162009

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Arcobacter butzleri str. JV22

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft33.58x;78

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: gastrointestinal tract

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Aliarcobacter butzleri JV22

text: Arcobacter butzleri JV22

text: Reference Genome

text: not determined

text: BEI HM-298

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Arcobacter butzleri JV22


characteristic: External Id

text: The University of Chicago

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Neonatal piglet #116 cecal microbiota, formula diet, age 21 days

characteristic: description

text: gut metagenome

characteristic: organism

text: Piglet 116 cecal microbiota, formula diet, age 21 days, MID12


text: The University of Chicago

text: live

text: Generic

text: Neonatal piglet #70 cecal microbiota, milk diet, age 7 days.

text: gut metagenome

text: Piglet 70 cecal microbiota, milk diet, age 7 days, MID1

characteristic: title


text: The University of Chicago

text: live

text: Generic

text: Neonatal piglet 71 cecal microbiota, milk diet, age 7 days.

text: gut metagenome

text: Piglet 71 cecal microbiota, milk diet, age 7 days, MID2


text: The University of Chicago

text: live

text: Generic

text: Neonatal piglet 73 cecal microbiota, milk diet, age 7 days.

text: gut metagenome

text: Piglet 73 cecal microbiota, milk diet, age 7 days, MID3


text: The University of Chicago

text: live

text: Generic

text: Neonatal piglet #95 cecal microbiota, milk diet, age 7 days.

text: gut metagenome

text: Piglet 95 cecal microbiota, milk diet, age 7 days, MID8


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.3-04192010

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Aggregatibacter segnis str. ATCC 33393

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft40.36x;19

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: oral cavity

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: oral

text: not determined

text: not determined

text: Aggregatibacter segnis ATCC 33393

text: Aggregatibacter segnis ATCC 33393

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: ATCC 33393

text: Homo sapiens

characteristic: specific host

text: ATCC 33393

text: MIGS Cultured Bacterial/Archaeal sample from Aggregatibacter segnis ATCC 33393


name: PRJNA47607.Ostreococcus lucimarinus virus OlV3

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Off to Concepcion, Chili

text: DNA:ds Viral DNA

characteristic: isolation source

text: Ostreococcus lucimarinus virus OlV3

characteristic: organism

text: Ostreococcus lucimarinus virus OlV3

characteristic: sample name

text: unknown Unknown Species

characteristic: strain

text: Generic sample from Ostreococcus lucimarinus virus OlV3

characteristic: title


PRJNA52817.Moryzae_CM + 4C

text: Broad Institute

text: live

text: Generic

text: Mycelium

text: Pyricularia oryzae 70-15

text: Moryzae_CM + 4C

text: Generic sample from Magnaporthe oryzae 70-15


text: Broad Institute

text: live

text: Generic

text: Human alphaherpesvirus 2

text: Generic sample from Human herpesvirus 2


PRJNA47593.Micromonas pusilla virus PL1

text: Broad Institute

text: live

text: Generic

characteristic: collection date

text: Atlantic Ocean:Gulf of Mexico

text: DNA:ds Viral DNA

text: Micromonas pusilla virus PL1

text: Micromonas pusilla virus PL1

text: Uncultured virus

text: Generic sample from Micromonas pusilla virus PL1


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.3-04192010

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: culture-collection

text: Bifidobacterium dentium str. ATCC 27679

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft45.9x;24

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Bifidobacterium dentium ATCC 27679

text: Bifidobacterium dentium ATCC 27679

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, 454-Paired-end

characteristic: sequencing method

characteristic: sop

text: ATCC 27679

text: Homo sapiens

text: ATCC 27679

text: MIGS Cultured Bacterial/Archaeal sample from Bifidobacterium dentium ATCC 27679


Chara_vulgaris transcriptome

characteristic: External Id

text: IGB Berlin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Chara vulgaris

characteristic: organism

text: Chara vulgaris whole alga transcriptome

characteristic: title


text: INRA

text: live

text: Generic

text: Oncorhynchus mykiss

text: cDNA from white muscle of Oncorhynchus mykiss adult


text: INRA

text: live

text: Generic

text: pool of 10 beheaded and eviscerated larvae

characteristic: description

text: Oncorhynchus mykiss

text: cDNA from from 38 days larvae trunks


equine immune cells

text: Helmholtz Zentrum Muenchen

text: live

text: Generic

text: Equus caballus

text: equine immune cells


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 2 week-old WIK zebrafish (Danio rerio), leading with MID-barcode AGACGCACTC

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 2 week-old WIK zebrafish (Danio rerio), leading with MID-barcode AGCACTGTAG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 2 week-old WIK zebrafish (Danio rerio), leading with MID-barcode ATCAGACACG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 2 week-old WIK zebrafish (Danio rerio), leading with MID-barcode ATATCGCGAG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 2 week-old WIK zebrafish (Danio rerio), leading with MID-barcode CGTGTCTCTA

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 2 week-old WIK zebrafish (Danio rerio), leading with MID-barcode CTCGCGTGTC

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ACGAGTGCGT

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ACGCTCGACA

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 month-old WIK zebrafish (Danio rerio), leading with MID-barcode AGACGCACTC

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 month-old WIK zebrafish (Danio rerio), leading with MID-barcode AGCACTGTAG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ATCAGACACG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ATATCGCGAG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 month-old WIK zebrafish (Danio rerio), leading with MID-barcode CGTGTCTCTA

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 month-old WIK zebrafish (Danio rerio), leading with MID-barcode CTCGCGTGTC

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 3 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ACGAGTGCGT

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 3 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ACGCTCGACA

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 3 month-old WIK zebrafish (Danio rerio), leading with MID-barcode AGACGCACTC

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 3 month-old WIK zebrafish (Danio rerio), leading with MID-barcode AGCACTGTAG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 3 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ATCAGACACG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 3 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ATATCGCGAG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 3 month-old WIK zebrafish (Danio rerio), leading with MID-barcode CGTGTCTCTA

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 3 month-old WIK zebrafish (Danio rerio), leading with MID-barcode CTCGCGTGTC or with no-barcode (leading with either IgM reverse-primer TGCACTGAGACAAACCGAAG or IgZ reverse primer TCAGAGGCCAGACATCCAAT)

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode CGTGTCTCTA

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode CTCGCGTGTC

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode TAGTATCAGC

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode TGATACGTCT

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode TACTGAGCTA

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ACGAGTGCGT

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ACGCTCGACA

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode AGACGCACTC

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode AGCACTGTAG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ATCAGACACG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode ATATCGCGAG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 6 month-old WIK zebrafish (Danio rerio), leading with MID-barcode TCTCTATGCG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 year-old WIK zebrafish (Danio rerio), leading with MID-barcode ACGAGTGCGT

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 year-old WIK zebrafish (Danio rerio), leading with MID-barcode ACGCTCGACA

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 year-old WIK zebrafish (Danio rerio), leading with MID-barcode AGACGCACTC

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 year-old WIK zebrafish (Danio rerio), leading with MID-barcode AGCACTGTAG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 year-old WIK zebrafish (Danio rerio), leading with MID-barcode ATCAGACACG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 year-old WIK zebrafish (Danio rerio), leading with MID-barcode ATATCGCGAG

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 year-old WIK zebrafish (Danio rerio), leading with MID-barcode CGTGTCTCTA

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 year-old WIK zebrafish (Danio rerio), leading with MID-barcode CTCGCGTGTC

text: Danio rerio


text: Stanford University

text: live

text: Generic

text: Immunoglobulin heavy-chain cDNA from 1 year-old WIK zebrafish (Danio rerio), leading with MID-barcode TAGTATCAGC

text: Danio rerio


text: Broad Institute

text: live

text: Generic

text: United Kingdom: Piel Island

characteristic: isolate

text: 1/2 carcass

characteristic: isolation source

text: Sorex araneus

characteristic: sample name

text: female

characteristic: sex

text: Generic sample from Sorex araneus


PRJNA167910.# 75

text: Broad Institute

text: live

text: Generic

text: Female

characteristic: host sex

text: Liver, Heart

text: Ictidomys tridecemlineatus

text: # 75

text: Generic sample from Ictidomys tridecemlineatus


characteristic: External Id

text: University of Calgary

text: live

text: Generic

text: Samples collected across the flow path of sand-packed bioreactor injected with sulfate and nitrate. Originally inoculated with an enrichment culture from production waters of a low-temperature oil reservoir. DNA was extracted from each of the sand-pack fractions and the 16S community composition was analyzed using PCR-based techniques such as denaturant gradient gel electrophoresis, 454 pyrosequencing and quantitative PCR.

text: hydrocarbon metagenome

text: Microbial zonation in a bioreactor modeling a souring low temperature oil reservoir subjected to nitrate injection.


text: MRC Human Genetics Unit

characteristic: INSDC center name

text: live

text: Generic

text: none, BYE broth

characteristic: infection

text: Legionella pneumophila

text: Whole cell

characteristic: strain