BB1.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

characteristic: NCBI submission model

text: uncultured marine bacterium

text: Bing Bong Site 1 Bacteria Duplicate 2


Sample 1

status: PUBLIC

characteristic: External Id

text: NCSU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Leaves of six week-old Arabidopsis Columbia (Col-0) wild type grown at 24*C and 70% humidity under an 8-hour-light/16-hour-dark cycle and infiltrated with 10 mM MgSO4 buffer (mock-control, MOCK), were harvested 1 hour-post-infiltration (1hpi).

characteristic: description

text: Arabidopsis thaliana

characteristic: organism

characteristic: title


Sample 2

text: NCSU

text: live

text: Generic

text: Leaves of six week-old Arabidopsis Columbia (Col-0) wild type grown at 24*C and 70% humidity under an 8-hour-light/16-hour-dark cycle and infiltrated with 10 mM MgSO4 buffer (mock-control, MOCK) were harvested 1 hour-post-infiltration (1hpi).

text: Arabidopsis thaliana


Sample 3

text: NCSU

text: live

text: Generic

text: Leaves of six week-old Arabidopsis Columbia (Col-0) wild type grown at 24*C and 70% humidity under an 8-hour-light/16-hour-dark cycle and infiltrated with the avirulent bacterium Pseudomonas syringae pv tomato, strain DC3000 expressing avrRps4 on plasmid pV316-1A (avrRPS4, avirulent, AVR) were harvested 1 hour-post-infiltration (1hpi).

text: Arabidopsis thaliana


Sample 4

text: NCSU

text: live

text: Generic

text: Arabidopsis thaliana


BB2.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments close to Bing Bong Creek, Gulf of Carpentaria, Northern Territory, Australia. Map co-ordinates S 15*37'19.4 E 136*22'57.0. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was sandy adjacent to mangrove, with positive Eh readings between 55 and 165meV. Neutral to slightly alkaline pH, organic carbon content 0.1 - 0.7%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Bing Bong Site 2 Bacteria Duplicate 1


Sample 5

text: NCSU

text: live

text: Generic

text: Leaves of six week-old Arabidopsis Columbia (Col-0) wild type grown at 24*C and 70% humidity under an 8-hour-light/16-hour-dark cycle and infiltrated with the virulent bacterium Pseudomonas syringae pv tomato, strain DC3000 carrying the empty vector pVSP61 (DC3000, virulent, VIR) were harvested 1 hour-post-infiltration (1hpi).

text: Arabidopsis thaliana


BB2.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Bing Bong Site 2 Bacteria Duplicate 2


Sample 6

text: NCSU

text: live

text: Generic

text: Arabidopsis thaliana


BB3.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments close to Bing Bong Creek, Gulf of Carpentaria, Northern Territory, Australia. Map co-ordinates S 15*37'23.2 E 136*23'14.7. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was predominantly sandy adjacent to mangrove, with Eh readings between 35 and -165meV. Neutral to slightly alkaline pH, organic carbon content 0.2 - 1.0%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Bing Bong Site 3 Bacteria Duplicate 1


BB3.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Bing Bong Site 3 Bacteria Duplicate 2


BB4.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments close to Bing Bong Creek, Gulf of Carpentaria, Northern Territory, Australia. Map co-ordinates S 15*37'22.3 E 136*23'21.7. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was predominantly sandy adjacent to mangrove, with positive Eh readings between 81 and 175meV. Neutral pH, organic carbon content 0.06 - 0.1%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Bing Bong Site 4 Bacteria Duplicate 1


BB4.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Bing Bong Site 4 Bacteria Duplicate 2


BB5.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments close to Bing Bong Creek, Gulf of Carpentaria, Northern Territory, Australia. Map co-ordinates S 15*37'01.0 E 136*23'36.4. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was anoxic and sulphidic, with Eh readings between -184 and -225meV. Neutral pH, predominantly fine sediment particles, organic carbon content 1.8 - 2.8%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Bing Bong Site 5 Bacteria Duplicate 1


BB5.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Bing Bong Site 5 Bacteria Duplicate 2


BB6.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments close to Bing Bong Creek, Gulf of Carpentaria, Northern Territory, Australia. Map co-ordinates S 15*37'38.1 E 136*23'19.3. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was anoxic and sulphidic, with Eh readings between -176 and -311meV. Neutral pH, mixed sandy and fine sediment particles, organic carbon content 0.3 - 2.5%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Bing Bong Site 6 Bacteria Duplicate 1


BB6.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Bing Bong Site 6 Bacteria Duplicate 2


BB7.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments close to Bing Bong Creek, Gulf of Carpentaria, Northern Territory, Australia. Map co-ordinates S 15*37'42.7 E 136*23'24.2. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was anoxic and sulphidic, with Eh readings between -271 and -381meV. Neutral pH, predominantly fine sediment particles, organic carbon content 1.0 - 3.7%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Bing Bong Site 7 Bacteria Duplicate 1


BB7.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Bing Bong Site 7 Bacteria Duplicate 2


BB8.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments close to Bing Bong Creek, Gulf of Carpentaria, Northern Territory, Australia. Map co-ordinates S 15*37'31.8 E 136*23'39.8. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was sandy, with Eh readings between -100 and -150meV. Neutral to slightly alkaline pH, organic carbon content 0.1%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Bing Bong Site 8 Bacteria Duplicate 1


BB8.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Bing Bong Site 8 Bacteria Duplicate 2


BB9.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments close to Bing Bong Creek, Gulf of Carpentaria, Northern Territory, Australia. Map co-ordinates S 15*37'28.0 E 136*24'01.9. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was sandy, with Eh readings between 59 and -138meV. Neutral to slightly alkaline pH, organic carbon content 0.1%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Bing Bong Site 9 Bacteria Duplicate 2


BB9.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Bing Bong Site 9 Bacteria Duplicate 2


text: DOE Joint Genome Institute

text: live

text: Generic

text: Aquilegia formosa

text: Aquilegia formosa

tag: attribute

characteristic: sample number

text: Generic sample from Aquilegia formosa


text: ETH Zurich

text: live

text: Generic

text: DMSO

characteristic: agent

characteristic: cell line

text: cultured cells of embryonic origin

characteristic: cell type

text: Drosophila melanogaster

text: S2 cells

characteristic: time point


text: ETH Zurich

text: live

text: Generic

characteristic: NCBI submission model

text: Radicicol

text: cultured cells of embryonic origin

text: Drosophila melanogaster

text: S2 cells


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Generic

text: Aquilegia chrysantha

text: Aquilegia chrysantha

text: Generic sample from Aquilegia chrysantha


text: LFE Bioinformatik, Institut für Informatik, Ludwig-Maximilians-Universität Munich

characteristic: INSDC center name

text: live

text: Generic

text: fibroblasts

text: mock

characteristic: hours past infection

text: none (mock)

characteristic: infected with

text: Mus musculus

text: total RNA

characteristic: rna type

text: NIH-3T3 fibroblasts

text: total RNA mock


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: fibroblasts

text: BAC-derived MCMV (murine cytomegalovirus) Smith strain

text: Mus musculus

text: total RNA

text: NIH-3T3 fibroblasts

text: total RNA 25hpi


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: fibroblasts

text: Mus musculus

characteristic: organism

text: total RNA

text: NIH-3T3 fibroblasts

text: total RNA 48hpi


text: live

text: Generic

text: fibroblasts

text: mock

text: none (mock)

text: Mus musculus

text: pre-existing RNA

text: NIH-3T3 fibroblasts

text: pre-existing RNA mock

characteristic: title


text: live

text: Generic

characteristic: cell line

text: fibroblasts

text: Mus musculus

text: pre-existing RNA

text: NIH-3T3 fibroblasts

text: pre-existing RNA 25hpi


text: live

text: Generic

text: fibroblasts

characteristic: cell type

text: Mus musculus

text: pre-existing RNA

text: NIH-3T3 fibroblasts

text: pre-existing RNA 48hpi


text: live

text: Generic

text: fibroblasts

text: mock

text: none (mock)

text: Mus musculus

text: newly-transcribed RNA

text: NIH-3T3 fibroblasts

text: newly-transcribed RNA mock


text: live

text: Generic

text: fibroblasts

text: Mus musculus

text: newly-transcribed RNA

text: NIH-3T3 fibroblasts

text: newly-transcribed RNA 1-2hpi


text: live

text: Generic

text: fibroblasts

text: Mus musculus

text: newly-transcribed RNA

text: NIH-3T3 fibroblasts

text: newly-transcribed RNA 5-6hpi


text: live

text: Generic

text: fibroblasts

text: Mus musculus

text: newly-transcribed RNA

text: NIH-3T3 fibroblasts

text: newly-transcribed RNA 12-13hpi


text: live

text: Generic

text: fibroblasts

text: Mus musculus

text: newly-transcribed RNA

text: NIH-3T3 fibroblasts

text: newly-transcribed RNA 18-19hpi


text: live

text: Generic

text: fibroblasts

text: Mus musculus

text: newly-transcribed RNA

text: NIH-3T3 fibroblasts

text: newly-transcribed RNA 24-25hpi


text: live

text: Generic

text: fibroblasts

text: Mus musculus

text: newly-transcribed RNA

text: NIH-3T3 fibroblasts

text: newly-transcribed RNA 47-48hpi


text: Narry Kim Lab, School of Biological Sciences, Seoul National University

text: live

text: Generic

text: HeLa

text: Homo sapiens

text: Cervical cancer cells transfected with siRNA against luciferase two times over a 4~5 day period (rep 1).

text: siLuc

characteristic: transfection


text: live

text: Generic

characteristic: NCBI submission model

text: HeLa

text: Homo sapiens

text: Cervical cancer cells transfected with siRNA against luciferase two times over a 4~5 day period (rep 2).

text: siLuc


characteristic: External Id

text: live

text: Generic

text: HeLa

text: Homo sapiens

text: Cervical cancer cells transfected with siRNAs against TUT7, TUT4, and TUT2 two times over a 4~5 day period (rep 1).

text: siTUTs


characteristic: INSDC center name

text: live

text: Generic

text: HeLa

text: Homo sapiens

text: Cervical cancer cells transfected with siRNAs against TUT7, TUT4, and TUT2 two times over a 4~5 day period (rep 2).

text: siTUTs


text: live

text: Generic

text: HeLa

text: Homo sapiens

text: Cervical cancer cells transfected with siRNA against GFP.

text: siGFP


text: James Noonan, Genetics, Yale University School of Medicine

text: live

text: Generic

text: gestational day E11.5

characteristic: developmental stage

text: ChIP-seq

characteristic: method

text: Mus musculus

text: Paired-end 75 multiplexed

characteristic: sequencing run type

text: embryonic forelimb bud

characteristic: strain

text: forelimb bud

characteristic: tissue

text: E11.5_forelimb_ChIP_input_rep4_index4_mate


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Abcam

characteristic: antibody vendor

characteristic: chip antibody

text: gestational day E11.5

text: ChIP-seq

text: Mus musculus

text: Paired-end 75 multiplexed

text: embryonic forelimb bud

text: forelimb bud

text: E11.5_forelimb_H3K27ac_ChIP_seq_index6_mate


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: gestational day E11.5

text: ChIP-seq

text: Mus musculus

characteristic: organism

text: Paired-end 75 multiplexed

text: embryonic hindlimb bud

text: hindlimb bud

text: E11.5_hindlimb_ChIP_input_rep4_index12_mate

characteristic: title


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission model

text: Abcam

text: gestational day E11.5

text: ChIP-seq

text: Mus musculus

text: Paired-end 75 multiplexed

text: embryonic hindlimb bud

text: hindlimb bud

text: E11.5_hindlimb_H3K27ac_ChIP_seq_index7_mate


text: Howard Chang, Department of Dermatology, Stanford University

characteristic: INSDC center name

text: live

text: Generic

text: Drosophila melanogaster

text: nos Gal4 VFP-SmD3

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: GFP

characteristic: rip antibody

text: nos Gal4 VFP-SmD3

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: nos Gal4 VFP-SmE

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: GFP

text: nos Gal4 VFP-SmE

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: nos Gal4 VFP-SmB

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: GFP

text: nos Gal4 VFP-SmB

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: Oregon R

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: Oregon R

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: GFP

text: ovary


text: Cancer Science Institute of Singapore, National University of Singapore

text: live

text: Generic

characteristic: cell line

text: MspI

characteristic: digestion

text: Homo sapiens

text: Lips1 Cell lines

text: bisulfite

characteristic: treatment


characteristic: INSDC first public

text: live

text: Generic

text: MspI

text: Homo sapiens

text: Lips3 Cell lines

text: bisulfite


characteristic: INSDC last update

text: live

text: Generic

text: hES

text: MspI

text: Homo sapiens

text: hES Cell lines

text: bisulfite


characteristic: INSDC secondary accession

text: live

text: Generic

text: MspI

text: Homo sapiens

text: k562 Cell lines

text: bisulfite


text: PGFE, UMass Medical School

text: live

text: Generic

text: bacterial one-hybrid (B1H) selected

characteristic: library selection

text: synthetic construct

text: synthetic library


outer unfertilized ear minus cob

text: University of Georgia

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: mature but unfertilized outer layer of ear tissue (no cob)

characteristic: description

text: Zea mays

text: unfertilized outer ear

characteristic: tissue

text: maize unfertilized outer ear


text: Univeristy of British Columbia

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Fecal

text: Mus musculus

text: Long-Term Antibiotic Treatment Pre-Asthma


characteristic: External Id

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus

characteristic: organism

characteristic: title


ST Untreated-1

text: Univeristy of British Columbia

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: Feces

text: Mus musculus

text: Short-Term Antibiotic Treatment Pre-Asthma


ST Untreated-2

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus

text: Short-Term Antibiotic Treatment Post-Asthma


ST Untreated-3

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


ST Untreated-4

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


ST Vanco-1

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


ST Vanco-2

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


ST Vanco-3

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


ST Vanco-4

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


ST Strep-1

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


ST Strep-2

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


ST Strep-3

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


ST Strep-4

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


text: Ana Losada's lab, Spanish National Cancer Research Centre (CNIO)

text: live

text: Generic

text: Mouse Embryonic Fibroblasts (MEF)

characteristic: cell type

characteristic: developmental stage

text: WT/SA1-null (pool)

characteristic: genotype/variation

text: Mus musculus

text: input DNA

text: C57BL/6 x 129 Sv

characteristic: strain

text: InputMEFs


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mouse Embryonic Fibroblasts (MEF)

characteristic: chip antibody

text: WT

text: Mus musculus

text: Chromatin IP against SMC1

text: C57BL/6 x 129 Sv


text: live

text: Generic

text: Mouse Embryonic Fibroblasts (MEF)

text: Mus musculus

text: Chromatin IP against SMC1

text: C57BL/6 x 129 Sv


text: live

text: Generic

text: Mouse Embryonic Fibroblasts (MEF)

text: WT

text: Mus musculus

text: Chromatin IP against SMC3

text: C57BL/6 x 129 Sv


text: live

text: Generic

text: Mouse Embryonic Fibroblasts (MEF)

text: Mus musculus

text: Chromatin IP against SMC3

text: C57BL/6 x 129 Sv


text: live

text: Generic

text: Mouse Embryonic Fibroblasts (MEF)

text: Mus musculus

text: Chromatin IP against SA1

text: C57BL/6 x 129 Sv


text: DOE Joint Genome Institute

text: live

text: Generic

text: Boechera stricta LTM

characteristic: description

text: Boechera stricta

characteristic: sample number

text: LTM

text: Generic sample from Boechera stricta


text: China Agricultural University, College of Agriculture and Biotechnology, National Maize Improvement Center of China

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: Zea mays subsp. mays


characteristic: External Id

text: Centre for Chemical Biology (CCB@USM)

text: live

text: Generic

characteristic: SRA accession

text: RRIM 600

text: Hevea brasiliensis

text: Sample of Hevea brasiliensis


text: DOE Joint Genome Institute

text: live

text: Generic

text: Panicum hallii var filipes

text: Panicum hallii

characteristic: organism

text: var filipes

text: Generic sample from Panicum hallii

characteristic: title


text: Toth Lab, Department of Pharmacology, Weill Cornell Medical College

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: wild type offspring of wild type mother

text: Mus musculus

text: ventral dentate granule cell

text: Swiss Webster

text: hippocampus

characteristic: tissue

text: wild type offspring of wild type mother


text: live

text: Generic

text: wild type offspring of heterozygote mother

characteristic: genotype/variation

text: Mus musculus

text: ventral dentate granule cell

text: Swiss Webster

text: hippocampus


text: live

text: Generic

text: 5HT1A knock-out offspring of heterozygote mother

text: Mus musculus

text: ventral dentate granule cell

text: Swiss Webster

characteristic: strain

text: hippocampus


characteristic: INSDC first public

text: live

text: Generic

text: 5HT1A knock-out offspring of knock-out mother

text: Mus musculus

text: ventral dentate granule cell

text: Swiss Webster

text: hippocampus


text: DOE Joint Genome Institute

characteristic: INSDC last update

text: live

text: Generic

text: Baltic Sea site KBB sample SWE 26_20.5m

text: marine sediment metagenome

text: Generic sample from marine sediment metagenome


text: Instutute of Molecular Pathology

characteristic: INSDC secondary accession

text: live

text: Generic

text: anti EBF1 #0647 homemade

text: 4-5 day culture (Cd19+ cells from Bone marrow)

characteristic: extraction method

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: EBF1 ChIP-seq [8246.6]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: anti EBF1 #0647 homemade

characteristic: chip antibody

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: EBF1 ChIP-seq [8246.2]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: anti EBF1 #0647 homemade

text: Ex vivo (FACS sort)

text: WT

text: Mus musculus

text: FO B

text: Lymph Node

text: EBF1 ChIP-seq mature B [8271]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: anti EBF1 #0647 homemade

text: Ex vivo (FACS sort)

text: WT

text: Mus musculus

text: FO B

text: Lymph Node

text: EBF1 ChIP-seq mature B [9842]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (FACS sort)

text: Cd23-Cre Ebf1(fl/-)

text: Mus musculus

text: FO B

text: (C57BL/6-129) mixed

text: Spleen

text: RNA-seq mature B [9761]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (FACS sort)

text: Mus musculus

text: FO B

text: Spleen

text: RNA-seq mature B [9762]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (FACS sort)

text: Mus musculus

text: FO B

text: Spleen

text: RNA-seq mature B [10423]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (FACS sort)

text: Cd79a-Cre R26CA(Ebf1/+)

text: Mus musculus

text: FO B

text: Spleen

text: RNA-seq mature B [9765]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (FACS sort)

text: Cd79a-Cre R26CA(Ebf1/+)

text: Mus musculus

text: FO B

text: Spleen

text: RNA-seq mature B [10424]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (FACS sort)

text: Mus musculus

text: B-1a B

text: Spleen

text: RNA-seq mature B [9764]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (FACS sort)

text: Mus musculus

text: B-1a B

text: Spleen

text: RNA-seq mature B [10425]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (FACS sort)

text: Cd79a-Cre R26CA(Ebf1/+)

text: Mus musculus

text: B-1a B

text: Spleen

text: RNA-seq mature B [9763]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (FACS sort)

text: Cd79a-Cre R26CA(Ebf1/+)

text: Mus musculus

text: B-1a B

text: Spleen

text: RNA-seq mature B [10426]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: Rag2.Pro-B.input [8091.5.]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: Rag2.Pro-B.input [8091.6]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: Rag2.Pro-B.input [8112.6]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: Rag2.Pro-B.input [8112.1]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: Rag2.Pro-B.input [8123.2]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: Rag2.Pro-B.input [8123.3]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: Rag2.Pro-B.input [8149.8.30222AAXX]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: Rag2.Pro-B.input [8149.8.301DTAAXX]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (MACS sort)

text: WT

text: Mus musculus

text: Mature B

text: Lymph Node

text: WT.Mature_B.Input [8042.7.207JYAAXX]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (MACS sort)

text: WT

text: Mus musculus

text: Mature B

text: Lymph Node

text: WT.Mature_B.Input [8042.5.208KBAAXX]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (MACS sort)

text: WT

text: Mus musculus

text: Mature B

text: Lymph Node

text: WT.Mature_B.Input [8042.7.20CUYAAXX]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (MACS sort)

text: WT

text: Mus musculus

text: Mature B

text: Lymph Node

text: WT.Mature_B.Input [8089]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (MACS sort)

text: WT

text: Mus musculus

text: Mature B

text: Lymph Node

text: WT.Mature_B.Input [8042.8.208KDAAXX]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (MACS sort)

text: WT

text: Mus musculus

text: Mature B

text: Lymph Node

text: WT.Mature_B.Input [8087]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (MACS sort)

text: WT

text: Mus musculus

text: Mature B

text: Lymph Node

text: WT.Mature_B.Input [8094]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo (MACS sort)

text: WT

text: Mus musculus

text: Mature B

text: Lymph Node

text: WT.Mature_B.Input [8096]


Chiropteran Mucosal 16S

text: Texas Tech University

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: mucosal scrapes of distal colons from various Chiropteran species

characteristic: description

characteristic: host taxon id

text: uncultured bacterium

text: uncultured bacterium from Chiropteran distal colon mucosa


characteristic: External Id

text: Bioinformatics and Computational Genomics (BioBix), Mathematical modelling, Statistics and Bioinformatics, Ghent University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: hydroponic culture for 2 days

characteristic: growth conditions

text: mock

characteristic: infection

text: Oryza sativa Japonica Group

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

text: 3 days after inoculation

characteristic: time point

text: root tip

text: Mock_infected_rice_root_tip-time_point_1-replicate_1


characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: hydroponic culture for 2 days

text: mock

text: Oryza sativa Japonica Group

characteristic: organism

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

text: 3 days after inoculation

text: root tip

characteristic: tissue

text: Mock_infected_rice_root_tip-time_point_1-replicate_2

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: hydroponic culture for 2 days

text: mock

text: Oryza sativa Japonica Group

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

characteristic: strain

text: 3 days after inoculation

text: root tip

text: Mock_infected_rice_root_tip-time_point_1-replicate_3


text: live

text: Generic

text: hydroponic culture for 6 days

text: mock

text: Oryza sativa Japonica Group

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

text: 7 days after inoculation

text: root tip

text: Mock_infected_rice_root_tip-time_point_2-replicate_1


text: live

text: Generic

text: hydroponic culture for 6 days

text: mock

text: Oryza sativa Japonica Group

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

text: 7 days after inoculation

text: root tip

text: Mock_infected_rice_root_tip-time_point_2-replicate_2


text: live

text: Generic

text: hydroponic culture for 6 days

text: mock

text: Oryza sativa Japonica Group

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

text: 7 days after inoculation

text: root tip

text: Mock_infected_rice_root_tip-time_point_2-replicate_3


text: live

text: Generic

text: hydroponic culture for 2 days

text: mock

text: Oryza sativa Japonica Group

text: Rice root

text: cv. Nipponbare (GSOR-100)

text: 3 days after inoculation

text: root

text: Mock_infected_rice_root-time_point_1-replicate_1


text: live

text: Generic

text: hydroponic culture for 2 days

text: mock

text: Oryza sativa Japonica Group

text: Rice root

text: cv. Nipponbare (GSOR-100)

text: 3 days after inoculation

text: root

text: Mock_infected_rice_root-time_point_1-replicate_2


text: live

text: Generic

text: hydroponic culture for 6 days

text: mock

text: Oryza sativa Japonica Group

text: Rice root

text: cv. Nipponbare (GSOR-100)

text: 7 days after inoculation

text: root

text: Mock_infected_rice_root-time_point_2-replicate_1


text: live

text: Generic

text: hydroponic culture for 6 days

text: mock

text: Oryza sativa Japonica Group

text: Rice root

text: cv. Nipponbare (GSOR-100)

text: 7 days after inoculation

text: root

text: Mock_infected_rice_root-time_point_2-replicate_2


text: live

text: Generic

text: hydroponic culture for 2 days

text: Meloidogyne graminicola

text: Oryza sativa Japonica Group

text: Philippines

characteristic: origin

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

text: 3 days after inoculation

text: root tip

text: Meloidogyne_infected_rice_root_tip-time_point_1-replicate_1


characteristic: External Id

text: live

text: Generic

text: hydroponic culture for 2 days

text: Meloidogyne graminicola

text: Oryza sativa Japonica Group

text: Philippines

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

text: 3 days after inoculation

text: root tip

text: Meloidogyne_infected_rice_root_tip-time_point_1-replicate_2


text: live

characteristic: INSDC status

text: Generic

text: hydroponic culture for 2 days

text: Meloidogyne graminicola

text: Oryza sativa Japonica Group

text: Philippines

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

text: 3 days after inoculation

text: root tip

text: Meloidogyne_infected_rice_root_tip-time_point_1-replicate_3


text: live

text: Generic

characteristic: NCBI submission package

text: hydroponic culture for 6 days

text: Meloidogyne graminicola

text: Oryza sativa Japonica Group

text: Philippines

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

text: 7 days after inoculation

text: root tip

text: Meloidogyne_infected_rice_root_tip-time_point_2-replicate_1


text: live

text: Generic

text: hydroponic culture for 6 days

characteristic: growth conditions

text: Meloidogyne graminicola

text: Oryza sativa Japonica Group

text: Philippines

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

text: 7 days after inoculation

text: root tip

text: Meloidogyne_infected_rice_root_tip-time_point_2-replicate_2


text: live

text: Generic

text: hydroponic culture for 6 days

text: Meloidogyne graminicola

characteristic: infection

text: Oryza sativa Japonica Group

text: Philippines

text: Rice root tip

text: cv. Nipponbare (GSOR-100)

text: 7 days after inoculation

text: root tip

text: Meloidogyne_infected_rice_root_tip-time_point_2-replicate_3


text: Bioinformatics and Computational Genomics (BioBix), Mathematical modelling, Statistics and Bioinformatics, Ghent University

text: live

text: Generic

text: hydroponic culture for 2 days

text: Hirschmanniella oryzae

text: Oryza sativa Japonica Group

text: Myanmar

text: Rice root

text: cv. Nipponbare (GSOR-100)

text: 3 days after inoculation

characteristic: time point

text: root

text: Hirschmanniella_infected_rice_root-time_point_1-replicate_1


characteristic: INSDC center name

text: live

text: Generic

text: hydroponic culture for 2 days

text: Hirschmanniella oryzae

text: Oryza sativa Japonica Group

text: Myanmar

text: Rice root

text: cv. Nipponbare (GSOR-100)

text: 3 days after inoculation

text: root

text: Hirschmanniella_infected_rice_root-time_point_1-replicate_2


text: live

text: Generic

characteristic: NCBI submission model

text: hydroponic culture for 2 days

text: Hirschmanniella oryzae

text: Oryza sativa Japonica Group

text: Myanmar

text: Rice root

text: cv. Nipponbare (GSOR-100)

text: 3 days after inoculation

text: root

text: Hirschmanniella_infected_rice_root-time_point_1-replicate_3


text: live

text: Generic

characteristic: SRA accession

text: hydroponic culture for 6 days

text: Hirschmanniella oryzae

text: Oryza sativa Japonica Group

text: Myanmar

text: Rice root

text: cv. Nipponbare (GSOR-100)

text: 7 days after inoculation

text: root

text: Hirschmanniella_infected_rice_root-time_point_2-replicate_1


text: live

text: Generic

text: hydroponic culture for 6 days

text: Hirschmanniella oryzae

text: Oryza sativa Japonica Group

characteristic: organism

text: Myanmar

text: Rice root

text: cv. Nipponbare (GSOR-100)

text: 7 days after inoculation

text: root

text: Hirschmanniella_infected_rice_root-time_point_2-replicate_2


text: University of Toronto

text: live

text: Generic

text: resting

characteristic: activation status

characteristic: cell type

text: Homo sapiens

text: polyA+ RNA

characteristic: rna subtype

text: JSL1 human T Cell line

text: JSL1 resting


text: University of Toronto

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: stimulation with PMA

text: Homo sapiens

text: polyA+ RNA

text: JSL1 human T Cell line

text: JSL1 stimulation with PMA

characteristic: title


text: Ceres, Inc.

characteristic: INSDC secondary accession

text: live

text: Generic

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P1 - P12 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

characteristic: description

text: Miscanthus sinensis

text: Plants P1 - P12


characteristic: External Id

text: University of Iowa

text: live

characteristic: INSDC status

text: Generic

text: HeLa

characteristic: cell line

text: Homo sapiens

text: whole cell extract

characteristic: sample type

text: RNA Pol II WCE

text: RNA Pol II WCE


text: Ceres, Inc.

text: live

text: Generic

characteristic: NCBI submission package

text: Genome DNA libraries prepared using restriction enzyme FseI, plants Mb111, P86 - P96 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants Mb111, P86 - P96


text: Ceres, Inc.

characteristic: INSDC center name

text: live

text: Generic

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P101 - P112 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants P101 - P112


text: Ceres, Inc.

text: live

text: Generic

characteristic: NCBI submission model

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P113 - P124 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants P113 - P124


text: Ceres, Inc.

text: live

text: Generic

characteristic: SRA accession

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P125-P136 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants P125-P136


text: Ceres, Inc.

text: live

text: Generic

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P13-P24 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

characteristic: organism

text: Plants P13-P24


text: Ceres, Inc.

text: live

text: Generic

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P137-P148 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants P137-P148


text: DOE Joint Genome Institute

text: live

text: Generic

text: Orenia marismortui DSM 5156

text: Orenia marismortui DSM 5156

characteristic: sample number

text: DSM 5156

characteristic: strain

text: Generic sample from Orenia marismortui DSM 5156


text: Ceres, Inc.

text: live

text: Generic

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P149-P160 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants P149-P160


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: fed L1

characteristic: developmental stage

text: unc119(ed3);wgIs304(fos-1::TY1 EGFP FLAG;unc119)

characteristic: genotype

text: Caenorhabditis elegans

text: hermaphrodite

characteristic: sex

text: OP304(official name : OP304 genotype : unc119(ed3); wgIs304(fos-1::TY1 EGFP FLAG; unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The FOS-1::EGFP fusion protein is expressed in the correct fos-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the FOS-1 transcription factor. made_by : R Waterston )

text: Snyder_FOS-1_Input_L1_rep1 extraction1_seq1 aliquote 1


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_FOS-1_Input_L1_rep2 extraction1_seq1 aliquote 1

characteristic: title


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_FOS-1_GFP_L1_rep1 extraction1_seq1 aliquote 1


text: live

characteristic: INSDC status

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_FOS-1_GFP_L1_rep2 extraction1_seq1 aliquote 1


text: Ceres, Inc.

text: live

text: Generic

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P161-P172 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

characteristic: description

text: Miscanthus sinensis

text: Plants P161-P172


text: Ceres, Inc.

text: live

text: Generic

characteristic: NCBI submission package

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P173-P184 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants P173-P184


text: Ceres, Inc.

characteristic: INSDC center name

text: live

text: Generic

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P185-P196 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants P185-P196


text: Ceres, Inc.

text: live

text: Generic

characteristic: NCBI submission model

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P25-P36 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants P25-P36


text: Ceres, Inc.

text: live

text: Generic

characteristic: SRA accession

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P37-P48 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants P37-P48


text: Ceres, Inc.

text: live

text: Generic

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P49-P60 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

characteristic: organism

text: Plants P49-P60


text: Dartmouth Medical School

text: live

text: Generic

characteristic: antibody

text: LNCap

characteristic: cell line

text: Homo sapiens

text: Prostate Cancer Cell Line

text: Abcam

characteristic: vendor


text: Dartmouth Medical School

text: live

text: Generic

text: LNCap

text: Homo sapiens

text: Prostate Cancer Cell Line

text: 100nM of DHT and 4 hours in red-free RPMI media.

characteristic: treatment

text: Abcam


text: Dartmouth Medical School

text: live

text: Generic

text: LNCap

text: Homo sapiens

text: Prostate Cancer Cell Line


text: Ceres, Inc.

text: live

text: Generic

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P61-P72 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants P61-P72


text: Ceres, Inc.

text: live

text: Generic

text: Genome DNA libraries prepared using restriction enzyme FseI, plants P73-P84 are pooled and indexed with the corresponding barcode sequences: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Plants P73-P84


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: GRU-NPU-MDS

text: No

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Case Set

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from a human male participant in the dbGaP study Whole Exome Sequencing of Primary Mediastinal B-cell Lymphoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: DS-BLD-MDS

text: No

text: Homo sapiens

text: male

text: Case Set

text: Whole Exome Sequencing of Primary Mediastinal B-cell Lymphoma

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: GRU-NPU-MDS

text: No

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Non-tumor DNA sample from a human female participant in the dbGaP study Whole Exome Sequencing of Primary Mediastinal B-cell Lymphoma


text: dbGaP

text: live

text: Generic

text: DNA

text: GRU-NPU-MDS

text: No

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Case Set

characteristic: study design

characteristic: study name

characteristic: submitted sample id


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: DNA

text: GRU-NPU-MDS

text: Diffuse Large B-Cell Lymphoma (DLBCL)

characteristic: histological type

text: Yes

text: Homo sapiens

text: male

text: Case Set

characteristic: submitted subject id

characteristic: submitter handle

text: Tumor DNA sample from a human male participant in the dbGaP study Whole Exome Sequencing of Primary Mediastinal B-cell Lymphoma


text: dbGaP

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: GRU-NPU-MDS

text: Diffuse Large B-Cell Lymphoma (DLBCL)

text: Yes

text: Homo sapiens

text: female

text: Case Set

text: Tumor DNA sample from a human female participant in the dbGaP study Whole Exome Sequencing of Primary Mediastinal B-cell Lymphoma

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: DS-BLD-MDS

text: Diffuse Large B-Cell Lymphoma (DLBCL)

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: male

text: Case Set


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: DS-BLD-MDS

text: Diffuse Large B-Cell Lymphoma (DLBCL)

text: Yes

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

characteristic: study name

characteristic: submitted sample id


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: DNA

text: DS-BLD-MDS

text: No

text: Homo sapiens

text: female

text: Case Set

characteristic: submitted subject id

characteristic: submitter handle


Chinese HLA region

text: State Key Laboratory Of Biocontrol - Sun Yet-Sen University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

text: Chinese HLA region cnv

characteristic: title


text: China Agricultural University, College of Agriculture and Biotechnology, National Maize Improvement Center of China

text: live

text: Generic

text: Zea mays subsp. mays

characteristic: organism


Phoca largha transcriptome

characteristic: External Id

text: Liaoning Ocean and Fisheries Science Research Institute

text: live

text: Generic

text: De novo assembly and characterization of spotted seal Phoca largha transcriptome using Illumina paired-end sequencing

characteristic: description

text: Phoca largha


text: Department of Biology, University of Eastern Finland

characteristic: INSDC center name

text: live

text: Generic

text: La Calamine

characteristic: ecotype

text: Assunção, A.G.L., et al. 2003. New Phytol. 159, 411-419.

characteristic: metal accumulation and tolerance

text: Noccaea caerulescens

text: Zn/Pb mine spoil (calamine)

characteristic: origin

text: La Calamine

text: pool of 12 root samples

characteristic: tissue

text: La Calamine 3


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: La Calamine

text: Noccaea caerulescens

text: Zn/Pb mine spoil (calamine)

text: La Calamine

text: pool of 12 root samples

text: La Calamine 4


characteristic: INSDC secondary accession

text: live

text: Generic

text: La Calamine

text: Noccaea caerulescens

text: Zn/Pb mine spoil (calamine)

text: La Calamine

text: pool of 12 root samples

text: La Calamine 6


text: live

text: Generic

text: Ganges

text: Noccaea caerulescens

text: Zn/Pb mine spoil (calamine)

text: Ganges

text: pool of 12 root samples

text: Ganges 3


text: live

text: Generic

text: Ganges

text: Noccaea caerulescens

text: Zn/Pb mine spoil (calamine)

text: Ganges

text: pool of 12 root samples

text: Ganges 4


text: live

text: Generic

text: Ganges

text: Noccaea caerulescens

text: Zn/Pb mine spoil (calamine)

text: Ganges

text: pool of 12 root samples

text: Ganges 6


text: live

text: Generic

text: Monte Prinzera

text: Noccaea caerulescens

text: Ultramafic soil (serpentine, high Ni)

text: Monte Prinzera

text: pool of 12 root samples

text: Monte Prinzera 3


text: live

text: Generic

text: Monte Prinzera

text: Noccaea caerulescens

text: Ultramafic soil (serpentine, high Ni)

text: Monte Prinzera

text: pool of 12 root samples

text: Monte Prinzera 4


text: live

text: Generic

text: Monte Prinzera

text: Noccaea caerulescens

text: Ultramafic soil (serpentine, high Ni)

text: Monte Prinzera

text: pool of 12 root samples

text: Monte Prinzera 6


text: Max Planck Institute for molecular Genetics

text: live

text: Generic

text: Homo sapiens

text: Individual I200091-017


text: live

text: Generic

text: Homo sapiens

text: Individual I200091-004


text: live

text: Generic

text: Homo sapiens

text: Individual I200091-038


text: live

text: Generic

text: Homo sapiens

text: Individual I200091-032


text: live

text: Generic

text: Homo sapiens

text: Individual I192158-95


text: live

text: Generic

text: Homo sapiens

text: Individual I200091-002


text: live

text: Generic

text: Homo sapiens

text: Individual I200091-028


text: live

text: Generic

text: Homo sapiens

text: Individual I192158-80


text: live

text: Generic

text: Homo sapiens

text: Individual I192158-105


text: live

text: Generic

text: Homo sapiens

text: Individual I200091-024


text: live

text: Generic

text: Homo sapiens

text: Individual I200091-021


text: live

text: Generic

text: Homo sapiens

text: Individual I200091-030


text: live

text: Generic

text: Homo sapiens

text: Individual I192158-77


text: live

text: Generic

text: Homo sapiens

text: Individual I200091-023


text: Zon Lab, Hem/Onc, Children's Hospital Boston

text: live

text: Generic

text: adult red blood cells

characteristic: cell type

text: Danio rerio

text: adult red blood cells

text: zebrafish adult red cells Total Input


text: live

characteristic: INSDC status

text: Generic

text: Millipore

characteristic: antibody vendor

text: adult red blood cells

characteristic: chip antibody

text: Danio rerio

text: adult red blood cells

text: zebrafish adult red cells H3K4me3


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: adult red blood cells

text: Danio rerio

text: adult red blood cells

text: zebrafish Ab WCE


characteristic: External Id

text: live

text: Generic

text: ANAspec

text: adult red blood cells

text: Danio rerio

characteristic: organism

text: adult red blood cells

text: zebrafish Ab zgata1

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: Danio rerio

text: adult red blood cells

text: adult red blood cells

text: zebrafish adult red cells DnaseI


text: live

text: Generic

text: Danio rerio

text: adult liver cells

text: adult liver cells

text: zebrafish adult liver cells DnaseI


LT OVA Control-1

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

characteristic: description

text: Mus musculus

text: Short-Term Antibiotic Treatment Post-Asthm


LT OVA IL Control-1

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Control-2

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Control-2

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Control-3

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Control-3

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Control-4

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Control-4

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Control-5

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Control-6

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Strep-1

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Strep-1

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Strep-2

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Strep-2

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Strep-3

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Strep-3

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Strep-4

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Strep-5

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Strep-5

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Vanco-1

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Vanco-1

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Vanco-2

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Vanco-2

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA Vanco-3

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Vanco-3

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Vanco-4

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT OVA IL Vanco-5

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT Control-1B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT IL Control-1B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT Control-2B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT IL Control-2B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT Control-3B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT IL Control-3B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT Strep-1B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT Strep-2B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT IL Strep-2B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT Strep-3B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT IL Strep-3B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT Vanco-1B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT IL Vanco-1B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT Vanco-2B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT IL Vanco-2B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT Vanco-3B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


LT IL Vanco-3B

text: Univeristy of British Columbia

text: live

text: Generic

text: Feces

text: Mus musculus


salt-affected soils

text: ARRIAM

text: live

text: Generic

text: salt-affected soils default sample

text: soil metagenome

text: salt-affected soils


text: Rajewsky, Systems Biology of Gene Regulatory Elements, Max-Delbrueck Centrum Berlin-Buch

text: live

text: Generic

text: Ovaries

characteristic: developmental stage

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: Ovaries


text: live

text: Generic

text: Egg

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: Egg


text: live

text: Generic

text: 32-cell stage embryo

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: 32-cell stage embryo


text: live

text: Generic

text: Blastula (24 hpf)

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: Blastula (24 hpf)


text: live

text: Generic

text: Gastrula (48 hpf)

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: Gastrula (48 hpf)


text: live

text: Generic

text: Pluteus (72 hpf)

text: Strongylocentrotus purpuratus

text: Strongylocentrotus purpuratus

text: Pluteus (72 hpf)


text: Genome Institute of Singapore

text: live

text: Generic

text: Ebf1 (custom-made against murine Ebf1b)

text: Mus musculus

text: splenic B cells

characteristic: strain


text: Genome Institute of Singapore

characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus

text: splenic B cells

text: Input


text: Genome Institute of Singapore

characteristic: INSDC last update

text: live

text: Generic

text: H3K4me2; millipore; lot# DAM1724042; catalog# 07-030

text: adult

text: Mus musculus

text: splenic B cells


text: Genome Institute of Singapore

characteristic: INSDC secondary accession

text: live

text: Generic

text: H3K4me3; abcam; lot# GR37544-1; catalog# ab8580

text: adult

text: Mus musculus

text: splenic B cells


text: DOE Joint Genome Institute

text: live

text: Generic

text: Candidatus Pelagibacter ubique HIMB083

text: Candidatus Pelagibacter ubique HIMB083

characteristic: sample number

text: Generic sample from Candidatus Pelagibacter ubique HIMB083


text: Rutgers

text: live

characteristic: INSDC status

text: Generic

text: Reconstitution of in vitro nucleosomes (invitrosomes): Naked genomic DNA from wild-type C. elegans (N2 strain) was isolated by digesting flash frozen worms with proteinase K (Roche, 2mg/ml final concentration) in worm lysis buffer (0.1M Tris-HCl at pH 8.5, 0.1 M NaCl, 50 mM EDTA, 1% SDS) at 65?°C for 45 min followed by phenol, phenol/chloroform, chloroform extraction and ethanol precipitation. RNA was removed by digesting the isolated nucleic acid with RNAse A (Roche) followed by phenol/chloroform, chloroform extraction and ethanol precipitation. To produce DNA templates for both the Rsa I and Hinc II experiments, 40 µg of high-molecular weight genomic DNA was digested with 200 units of either restriction enzyme Rsa I or Hinc II (New England BioLabs) with the supplied buffers and 1X BSA (New England BioLabs). Digestion proceeded at 37?°C for two hours followed by phenol, phenol/chloroform, chloroform extraction and ethanol precipitation, resulting in complete digestion as assayed on a 1% UltraPure Agarose (Invitrogen) gel. A continuous smear of fragments was seen for both digestions with a distribution of fragments lengths centered upon and enriched around 850?bp and 3500 bp for the Rsa I and Hinc II digestions respectively. The Rsa I and Hinc II DNA digestions were assembled with recombinant Xenopus histones (a gift from Geeta Narlikar) into nucleosomes as described previously (Zawadzki KA, Morozov AV, Broach JR: Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae. Molecular biology of the cell 2009, 20:3503-3513) at a 1.1:1 molar ratio of DNA to histone octamer, such that on average one nucleosome would form per 850?bp or 3500 bp of DNA for the Rsa I and Hinc II reconstitutions, respectively. Specifically, 9.13?µg of DNA and 1.45?µg of histone octamer (for Rsa I) and 22.00?µg of DNA and 0.88?µg of histone octamer (for Hinc II) were reconstituted in a total volume of 200?µl. We call these in vitro reconstituted nucleosomes invitrosomes and will refer to them as such hereafter. Isolation of invitrosome core DNA fragments: Invitrosome core DNAs from both Rsa I and Hinc II reconstitutions were isolated by diluting 60?µl of the respective invitrosomes into a total volume of 200?µl containing 5?mM MgCl2, 5?mM CaCl2, 70?mM KCl and 10?mM Hepes at pH?7.9 (final concentrations) and digesting with 20 units of micrococcal nuclease (Roche) resuspended at 1?U/µl for 15?min at room temperature. The digestion was stopped by adding an equal volume of 3% SDS, 100?mM EDTA and 50?mM Tris. Histones were removed by treating with one-tenth volume proteinase K (20?mg/ml in TE at pH?7.4) for 30?min at 50?°C followed by phenol/chloroform and chloroform extractions and ethanol precipitation. In order to obtain enough sample for the Hinc II reconstitution, this procedure was repeated three times to process the entire Hinc II invitrosome sample and then pooled together in a total volume of 30 µl (the single processing of the Rsa I sample was also in a total volume of 30 µl). Invitrosome DNA cores were assayed for complete digestion and isolated on a 2% UltraPure Agarose (Invitrogen) gel run at 100?V for 1?h followed by DNA extraction from the gel using a QIAquick Gel Extraction Kit (Qiagen) following the standard protocol, with the exception of allowing the isolated gel sample to incubate in Buffer QG at room temperature until dissolved, rather than heating the sample at 50?°C as recommended by the manufacturer. Illumina library preparation and sequencing. The Rsa I and Hinc II libraries were prepared by processing the invitrosome core DNA fragments using the Illumina Genomic DNA Sample Prep Kit (Illumina 2007 Rev. A). Fragment end repair, linkering and library amplification were all done according to the kit instructions “Preparing Samples for Sequencing Genomic DNA” (Illumina 2007 Rev. A), with exceptions to the protocol mentioned below. Since our libraries are composed of ~147 bp DNA cores rather than intact genomic DNA, the protocol was started at the “Perform End Repair” step (page 11). At this step, 20 µl of the Rsa I invitrosome core DNA sample and 30 µl of the Hinc II invitrosome core DNA sample were used. For the Rsa I sample, 10 µl of extra water was added to achieve the 30 µl volume prescribed by the protocol. At the “Ligate Adapters to DNA Fragments” step the purification was performed with the QIAquick PCR Purification Kit (Qiagen) rather than MinElute PCR Purification Kit, and eluted in 30 µl of EB rather than 10 µl, and 10 µl of the sample was used in the next step. Additionally, a no-DNA control sample was processed in parallel to the Rsa I and Hinc II samples. After library preparation, each library was sequenced using a single lane of the Illumina GAII sequencer, resulting in 9.5 million and 5.5 million raw 36-bp reads for the Rsa I and Hinc II libraries, respectively.

text: Caenorhabditis elegans

text: In vitro nucleosomes formed on C. elegans DNA cut by RsaI


text: Rutgers

text: live

text: Generic

text: Reconstitution of in vitro nucleosomes (invitrosomes). Naked genomic DNA from wild-type C. elegans (N2 strain) was isolated by digesting flash frozen worms with proteinase K (Roche, 2mg/ml final concentration) in worm lysis buffer (0.1M Tris-HCl at pH 8.5, 0.1 M NaCl, 50 mM EDTA, 1% SDS) at 65?°C for 45 min followed by phenol, phenol/chloroform, chloroform extraction and ethanol precipitation. RNA was removed by digesting the isolated nucleic acid with RNAse A (Roche) followed by phenol/chloroform, chloroform extraction and ethanol precipitation. To produce DNA templates for both the Rsa I and Hinc II experiments, 40 µg of high-molecular weight genomic DNA was digested with 200 units of either restriction enzyme Rsa I or Hinc II (New England BioLabs) with the supplied buffers and 1X BSA (New England BioLabs). Digestion proceeded at 37?°C for two hours followed by phenol, phenol/chloroform, chloroform extraction and ethanol precipitation, resulting in complete digestion as assayed on a 1% UltraPure Agarose (Invitrogen) gel. A continuous smear of fragments was seen for both digestions with a distribution of fragments lengths centered upon and enriched around 850?bp and 3500 bp for the Rsa I and Hinc II digestions respectively. The Rsa I and Hinc II DNA digestions were assembled with recombinant Xenopus histones (a gift from Geeta Narlikar) into nucleosomes as described previously [55] at a 1.1:1 molar ratio of DNA to histone octamer, such that on average one nucleosome would form per 850?bp or 3500 bp of DNA for the Rsa I and Hinc II reconstitutions, respectively. Specifically, 9.13?µg of DNA and 1.45?µg of histone octamer (for Rsa I) and 22.00?µg of DNA and 0.88?µg of histone octamer (for Hinc II) were reconstituted in a total volume of 200?µl. We call these in vitro reconstituted nucleosomes invitrosomes and will refer to them as such hereafter. Isolation of invitrosome core DNA fragments. Invitrosome core DNAs from both Rsa I and Hinc II reconstitutions were isolated by diluting 60?µl of the respective invitrosomes into a total volume of 200?µl containing 5?mM MgCl2, 5?mM CaCl2, 70?mM KCl and 10?mM Hepes at pH?7.9 (final concentrations) and digesting with 20 units of micrococcal nuclease (Roche) resuspended at 1?U/µl for 15?min at room temperature. The digestion was stopped by adding an equal volume of 3% SDS, 100?mM EDTA and 50?mM Tris. Histones were removed by treating with one-tenth volume proteinase K (20?mg/ml in TE at pH?7.4) for 30?min at 50?°C followed by phenol/chloroform and chloroform extractions and ethanol precipitation. In order to obtain enough sample for the Hinc II reconstitution, this procedure was repeated three times to process the entire Hinc II invitrosome sample and then pooled together in a total volume of 30 µl (the single processing of the Rsa I sample was also in a total volume of 30 µl). Invitrosome DNA cores were assayed for complete digestion and isolated on a 2% UltraPure Agarose (Invitrogen) gel run at 100?V for 1?h followed by DNA extraction from the gel using a QIAquick Gel Extraction Kit (Qiagen) following the standard protocol, with the exception of allowing the isolated gel sample to incubate in Buffer QG at room temperature until dissolved, rather than heating the sample at 50?°C as recommended by the manufacturer. Illumina library preparation and sequencing. The Rsa I and Hinc II libraries were prepared by processing the invitrosome core DNA fragments using the Illumina Genomic DNA Sample Prep Kit (Illumina 2007 Rev. A). Fragment end repair, linkering and library amplification were all done according to the kit instructions “Preparing Samples for Sequencing Genomic DNA” (Illumina 2007 Rev. A), with exceptions to the protocol mentioned below. Since our libraries are composed of ~147 bp DNA cores rather than intact genomic DNA, the protocol was started at the “Perform End Repair” step (page 11). At this step, 20 µl of the Rsa I invitrosome core DNA sample and 30 µl of the Hinc II invitrosome core DNA sample were used. For the Rsa I sample, 10 µl of extra water was added to achieve the 30 µl volume prescribed by the protocol. At the “Ligate Adapters to DNA Fragments” step the purification was performed with the QIAquick PCR Purification Kit (Qiagen) rather than MinElute PCR Purification Kit, and eluted in 30 µl of EB rather than 10 µl, and 10 µl of the sample was used in the next step. Additionally, a no-DNA control sample was processed in parallel to the Rsa I and Hinc II samples. After library preparation, each library was sequenced using a single lane of the Illumina GAII sequencer, resulting in 9.5 million and 5.5 million raw 36-bp reads for the Rsa I and Hinc II libraries, respectively.

text: Caenorhabditis elegans

text: In vitro nucleosomes formed on C. elegans DNA cut by Hinc II


text: Indian Institute of Technology Roorkee

text: live

text: Generic

text: isolated from soil

text: Penicillium oxalicum

text: SSH library of azo dye AR-183 stressed Penicillium oxalicum SAR-3


text: Crop Diversification Centre North, Alberta Agriculture and Rural Development

text: live

text: Generic

text: The library was constructed from a suppression subtractive hybridization using cDNA from 7-day infected canola root as tester and non-infected as driver

text: seven days after inoculation

characteristic: dev-stage

text: Canola

characteristic: lab-host

text: Plasmodiophora brassicae

text: Plasmodiophora brassicae Led09 SSH cDNA library


text: Tangshan Teacher's College

text: live

text: Generic

characteristic: NCBI submission model

text: SSH library preparation from Isatis tinctoria root after treated by Fusarium solani

text: three-month-old roots

text: root

characteristic: organ

text: Isatis tinctoria

text: Subtractive suppression hybridization (SSH) library from tetraploid Isatis tinctoria root


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

characteristic: body site

text: CRGM

text: No

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

characteristic: study design

text: Molecular Profiling of Cancer

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor RNA sample from benign_adjacent of a human male participant in the dbGaP study Molecular Profiling of Cancer


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: RNA

text: CRGM

text: Yes

text: Homo sapiens

characteristic: organism

text: male

text: Case-Control

text: Molecular Profiling of Cancer

text: Tumor RNA sample from primary_tumor of a human male participant in the dbGaP study Molecular Profiling of Cancer

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: CRGM

text: Yes

text: Homo sapiens

text: male

text: Case-Control

text: Molecular Profiling of Cancer

text: Tumor RNA sample from unknown of a human male participant in the dbGaP study Molecular Profiling of Cancer


text: dbGaP

text: live

text: Generic

text: RNA

characteristic: body site

text: CRGM

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

characteristic: study design

text: Molecular Profiling of Cancer

characteristic: study name

characteristic: submitted sample id

text: Tumor RNA sample from metastatic_site of a human male participant in the dbGaP study Molecular Profiling of Cancer


characteristic: External Id

text: Kumamoto University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Embryonic stem cell

characteristic: cell type

text: ES cells KTPU8

characteristic: cell-line

text: Mus musculus

text: male

text: F1 of C57BL/6 and CBA

characteristic: strain

text: EGTC Gene Trap Library (Mus musculus F1(C57BL/6 x CBA))


Sample 7

text: NCSU

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Leaves of six week-old Arabidopsis Columbia (Col-0) wild type grown at 24*C and 70% humidity under an 8-hour-light/16-hour-dark cycle and infiltrated with 10 mM MgSO4 buffer (mock-control, MOCK) were harvested 6 hour-post-infiltration (6hpi).

characteristic: description

text: Arabidopsis thaliana

characteristic: organism

characteristic: title


Sample 8

text: NCSU

text: live

text: Generic

text: Arabidopsis thaliana


Sample 9

text: NCSU

text: live

text: Generic

text: Leaves of six week-old Arabidopsis Columbia (Col-0) wild type grown at 24*C and 70% humidity under an 8-hour-light/16-hour-dark cycle and infiltrated with the avirulent bacterium Pseudomonas syringae pv tomato, strain DC3000 expressing avrRps4 on plasmid pV316-1A (avrRPS4, avirulent, AVR) were harvested 6 hour-post-infiltration (6hpi).

text: Arabidopsis thaliana


Sample 10

text: NCSU

text: live

text: Generic

text: Arabidopsis thaliana


Sample 11

text: NCSU

text: live

text: Generic

text: Leaves of six week-old Arabidopsis Columbia (Col-0) wild type grown at 24*C and 70% humidity under an 8-hour-light/16-hour-dark cycle and infiltrated with the virulent bacterium Pseudomonas syringae pv tomato, strain DC3000 carrying the empty vector pVSP61 (DC3000, virulent, VIR) were harvested 6 hour-post-infiltration (6hpi).

text: Arabidopsis thaliana


Sample 12

text: NCSU

text: live

text: Generic

text: Arabidopsis thaliana


Sample 13

text: NCSU

text: live

text: Generic

text: Leaves of six week-old Arabidopsis Columbia (Col-0) wild type grown at 24*C and 70% humidity under an 8-hour-light/16-hour-dark cycle and infiltrated with 10 mM MgSO4 buffer (mock-control, MOCK) were harvested 12 hour-post-infiltration (12hpi).

text: Arabidopsis thaliana


Sample 14

text: NCSU

text: live

text: Generic

text: Arabidopsis thaliana


Sample 15

text: NCSU

text: live

text: Generic

text: Leaves of six week-old Arabidopsis Columbia (Col-0) wild type grown at 24*C and 70% humidity under an 8-hour-light/16-hour-dark cycle and infiltrated with the avirulent bacterium Pseudomonas syringae pv tomato, strain DC3000 expressing avrRps4 on plasmid pV316-1A (avrRPS4, avirulent, AVR) were harvested 12 hour-post-infiltration (12hpi).

text: Arabidopsis thaliana


Sample 16

text: NCSU

text: live

text: Generic

text: Arabidopsis thaliana


Sample 17

text: NCSU

text: live

text: Generic

text: Leaves of six week-old Arabidopsis Columbia (Col-0) wild type grown at 24*C and 70% humidity under an 8-hour-light/16-hour-dark cycle and infiltrated with the virulent bacterium Pseudomonas syringae pv tomato, strain DC3000 carrying the empty vector pVSP61 (DC3000, virulent, VIR) were harvested 12 hour-post-infiltration (12hpi).

text: Arabidopsis thaliana


Sample 18

text: NCSU

text: live

text: Generic

text: Arabidopsis thaliana


text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments from Port Curtis, near Gladstone, Queensland, Australia. Map co-ordinates S 23*48'49.6 E 151*11'32.5. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was predominantly fine and anoxic, with Eh readings between -135 and -205meV. Neutral pH, organic carbon content 1.4 - 1.6%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Yarwun Site ST10 Bacteria Duplicate 1


text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Yarwun Site ST10 Bacteria Duplicate 2


text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments from Port Curtis, near Gladstone, Queensland, Australia. Map co-ordinates S 23*45'29.6 E 151*09'34.0. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was variable in texture and grain size, anoxic, with Eh readings between -15 and -175meV. Neutral pH, organic carbon content 0.5 - 1.7%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Yarwun Site NT21 Bacteria Duplicate 1


text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Yarwun Site NT21 Bacteria Duplicate 2


text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments from Port Curtis, near Gladstone, Queensland, Australia. Map co-ordinates S 23*45'56.6 E 151*09'50.7. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was predominantly fine and anoxic, with Eh readings between -60 and -195meV. Neutral pH, organic carbon content 1.2 - 1.5%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Yarwun Site NT22 Bacteria Duplicate 1


text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Yarwun Site NT22 Bacteria Duplicate 2


text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments from Port Curtis, near Gladstone, Queensland, Australia. Map co-ordinates S 23*48'42.7 E 151*12'19.0. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was predominantly sandy with shell fragments, with Eh readings between 200 and -110meV. Neutral pH, organic carbon content 0.3 - 2.6%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Yarwun Site ST28 Bacteria Duplicate 1


text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Yarwun Site ST28 Bacteria Duplicate 2


text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments from Port Curtis, near Gladstone, Queensland, Australia. Map co-ordinates S 23*47'22.9 E 151*10'44.6. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was predominantly fine, with Eh readings between -140 and -190meV. Neutral pH, organic carbon content 1.0 - 1.9%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Yarwun Site RT40 Bacteria Duplicate 1


text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Yarwun Site RT40 Bacteria Duplicate 2


text: Charles Darwin University

text: live

text: Generic

text: Coastal sediments from Port Curtis, near Gladstone, Queensland, Australia. Map co-ordinates S 23*47'24.6 E 151*10'42.0. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was predominantly fine, with Eh readings between -170 and -195meV. Neutral pH, organic carbon content 1.7 - 2.0%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Yarwun Site RT41 Bacteria Duplicate 1


text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Yarwun Site RT41 Bacteria Duplicate 2


text: Escola Superior de Biotecnologia-UCP

text: live

text: Generic

text: Pinus pinaster


text: Escola Superior de Biotecnologia-UCP

text: live

text: Generic

text: Pinus pinea


Fruits

text: Beijing Institute of Genomics Chinese Acad of Sci - Key Lab

text: live

text: Generic

text: The date palm fruits at seven distinct developmental stages (0, 15, 30, 60, 90, 120, 135 days post pollination) were collected from a date palm farm at Al-Kharj (24*08'54N, 47*18'18E), Saudi Arabia.

text: Phoenix dactylifera

text: Fruits of female Khalas


mature leaf

text: live

text: Generic

text: Phoenix dactylifera

text: mature leaf of female Khalas


Blood 95451

text: Ben-Gurion Universitiy of the Negev

text: live

text: Generic

text: Homo sapiens

text: Whole mtDNA Blood Twin ID 95451


PRJNA48341.HMPMOCK Standard

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: human metagenome

text: HMPMOCK Standard

characteristic: sample name

text: Generic sample from human metagenome


characteristic: External Id

text: China Agricultural University, College of Agriculture and Biotechnology, National Maize Improvement Center of China

text: live

text: Generic

text: Zea mays subsp. mays


PRJNA40075.E.coli K12 MG1655

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: E.coli K12 MG1655

text: K12 MG1655

characteristic: substrain

text: Generic sample from Escherichia coli str. K-12 substr. MG1655


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: subsp. tularensis

characteristic: isolation source

text: Generic sample from Francisella tularensis subsp. tularensis MA00-2987


Horn Cancer Trascripts

text: Anand Agricultural University

text: live

text: Generic

text: Bos taurus

text: Transcriptome profile of cancerous horn tissue in Kankrej Bullock


text: Agricultural Biotechnology Research Center, Academia Sinica

text: live

text: Generic

text: Generic

text: Vegetative library with pooled RNAs from root (1 cm from root tip), stem and leaf was constructed by SMART cDNA Synthesis kit (Clontech, CA, USA) and normalized via DSN (Duplex-specific nuclease, Evrogen, Russia) (Zhulidov et al., 2004) treatment followed by pair-end DNA Sample Preparation Kits (Illumina, CA, USA) which included DNA shearing by sonication, adaptor ligation and DNA enrichment.

text: Phalaenopsis aphrodite

text: leaf

characteristic: tissue

text: sRNA research


characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Phalaenopsis aphrodite

text: flower

text: sRNA research


Enrichments

text: DTU-CfB

text: live

characteristic: INSDC status

text: Generic

text: uncultured Colwellia sp.

text: Samples of the Enrichments


text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Phalaenopsis aphrodite

text: seed

text: sRNA research


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Wetland Surface Sediment Feb2011 Site B1 Bulk

text: soil metagenome

characteristic: sample number

text: Generic sample from soil metagenome


Sample 74

text: Shanghai Medical School, Fudan University

text: live

text: Generic

characteristic: SRA accession

text: The first sample from patient A, collected on the 7th day prior to treatment.

characteristic: description

text: Mycobacterium tuberculosis

text: patient A - Sample One


Sample 26

text: live

text: Generic

text: The second sputum sample of patient A, collected in the 19th month of clinical treatment.

text: Mycobacterium tuberculosis

characteristic: organism

text: Patient A - Sample Two

characteristic: title


Sample 35

text: live

text: Generic

text: The third sputum sample of patient C, collected in the 24th month of clinical treatment

text: Mycobacterium tuberculosis

text: Patient A - Sample Three


Nickase-induced HDR 2-2

text: Sangamo Biosciences Inc.

text: live

text: Generic

text: Homo sapiens

text: Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzyme


text: Beijing Genome Institute

text: live

text: Generic

text: Homo sapiens


Piel sapo -t111

text: Comav upv

text: live

text: Generic

text: One nonnormalized complementary DNA (cDNA) library was constructed using leaf material from the T111 Piel de sapo line (Semillas Fit*, Barcelona, Spain), belonging to C. melo subsp. melo var. inodorus H. Jacq.

text: Cucumis melo var. inodorus

text: Piel de sapo/t111 non normalized


Conomon SC PI161375

text: Comav upv

text: live

text: Generic

text: One nonnormalized complementary DNA (cDNA) library was constructed using leaf material from the the accession PI161375, belonging to C. melo subsp. agrestis var. conomon (Thunb.) Makino.

text: Cucumis melo var. conomon

text: Conomon SC PI161375 nonormalized


Piel de sapo- pi*onet

text: Comav upv

text: live

text: Generic

text: One normalized cDNA library was constructed using total RNA extracted from different tissues (leaf, root, male and female flowers at different stages, seedlings, and dark-grown and ethylene treated seedlings) of the Pi*onet Piel de sapo cultivar (belonging to C. melo subsp. melo var. inodorus).

text: Cucumis melo var. inodorus

text: Piel de sapo- pi*onet normalized


Cantalupo vendrantais

text: Comav upv

text: live

text: Generic

text: One normalized cDNA library was constructed using total RNA extracted from different tissues (leaf, root, male and female flowers at different stages, seedlings, and dark-grown and ethylene treated seedlings) of the Vedrantais cultivar (belonging to C. melo subsp. melo var. cantalupensis Naudin).

text: Cucumis melo var. cantalupo

text: Cantalupo vendrantais normalized


longan embryogenic callus

text: Fujian Agriculture and Forestry University

text: live

text: Generic

text: Dimocarpus longan

text: Dimocarpus longan Lour. embryogenic callus


text: Center for Research in Agricultural Genomics

text: live

text: Generic

text: anti-GFP

characteristic: chip antibody

characteristic: genetic background

text: Arabidopsis thaliana

text: seedlings


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings

text: input DNA


text: Capital Normal University

characteristic: INSDC first public

text: live

text: Generic

characteristic: antibody catalog number

text: abcam

characteristic: antibody vendor

characteristic: cell line

text: RNA polymerase II

text: Homo sapiens

text: Dox-released HCT116-C52-tTA cells

text: Dox-released

characteristic: treatment


text: Capital Normal University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: abcam

text: RNA polymerase II

text: Homo sapiens

text: Dox-treated HCT116-C52 cells

text: Dox-treated


text: Capital Normal University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Abcam

text: RNA polymerase II

characteristic: infection

text: Homo sapiens

text: HeLa

text: HeLa (p77-infected) RNA polymerase II ChIP-seq


text: Capital Normal University

text: live

text: Generic

characteristic: SRA accession

text: Abcam

text: RNA polymerase II

text: Homo sapiens

characteristic: organism

text: HeLa

text: HeLa (pLL3.7-infected) RNA polymerase II ChIP-seq


text: Capital Normal University

text: live

text: Generic

text: Millipore

characteristic: chip antibody

text: Homo sapiens

text: HeLa

text: HeLa (p77-infected) γ-H2AX ChIP-seq

characteristic: title


characteristic: External Id

text: Capital Normal University

text: live

text: Generic

text: Millipore

text: Homo sapiens

text: HeLa

text: HeLa (pLL3.7-infected) γ-H2AX ChIP-seq


T. scripta embryonic transciptome

text: Swarthmore College

characteristic: INSDC center name

text: live

text: Generic

text: Pooled RNA from stage 14 and stage 17 Red-eared slider (Trachemys scripta) turtle embryos

characteristic: description

text: Trachemys scripta

text: Trachemys scripta embryonic transcriptome


text: Pathology, Vanderbilt University

characteristic: INSDC first public

text: live

text: Generic

text: anti-Nkx3.1 (Santa Cruz Biotechnology, sc-15022)

characteristic: antibody

text: Nkx3-1+/+ (WT)

characteristic: genotype/variation

text: Mus musculus

text: Recombinant inbred B6 x 129

characteristic: strain

text: whole prostate

characteristic: tissue


text: Pathology, Vanderbilt University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Nkx3-1+/- (HET)

text: Mus musculus

text: Recombinant inbred B6 x 129

text: whole prostate


text: Pathology, Vanderbilt University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Nkx3-1-/- (KO)

text: Mus musculus

text: Recombinant inbred B6 x 129

text: whole prostate


text: MBL

text: live

text: Generic

characteristic: NCBI submission package

text: freshwater metagenome


text: Friedrich Miescher Institute for Biomedical Research

text: live

text: Generic

characteristic: SRA accession

text: Black Agouti 129

characteristic: background strain

text: Neuronal Progenitor (NP) Cells

characteristic: cell type

text: RESTwt

text: Mus musculus

text: Suz12 ChIP in wildtype NP cells


text: live

text: Generic

text: Black Agouti 129

text: Neuronal Progenitor (NP) Cells

text: RESTko

text: Mus musculus

characteristic: organism

text: Suz12 ChIP in RESTko NP cells

characteristic: title


characteristic: External Id

text: Schaefer Lab, Cell and Developmental Biology, Medical University Vienna, Center for Anatomy & Cell Biology

characteristic: INSDC center name

text: live

text: Generic

text: adult males, 10 days

characteristic: developmental stage

text: Drosophila melanogaster

text: small RNAs (25-70 nucleotides)

characteristic: rna fraction

text: heterozygous; control, male, whole body minus testis

text: w1118; +/Dnmt2 mutant; +/+

text: whole body without testis

text: endogenous small RNAs from heterozygous; control, 10 day old, male, whole body minus testis


characteristic: INSDC first public

text: live

text: Generic

text: adult males, 10 days

text: Drosophila melanogaster

text: small RNAs (25-70 nucleotides)

text: heterozygous; heat shock, male, whole body minus testis

text: w1118; +/Dnmt2 mutant; +/+

text: whole body without testis

text: endogenous small RNAs from heterozygous; heat shock, 10 day old, male, whole body minus testis


text: live

text: Generic

text: adult males, 12 days

text: Drosophila melanogaster

text: small RNAs (25-70 nucleotides)

text: heterozygous; 2 day recovery, male, whole body minus testis

text: w1118; +/Dnmt2 mutant; +/+

characteristic: strain

text: whole body without testis

text: endogenous small RNAs from heterozygous; 2 day recovery, 12 day old, male, whole body minus testis


text: live

text: Generic

text: adult males, 10 days

text: Drosophila melanogaster

text: small RNAs (25-70 nucleotides)

text: Dnmt2 mutants; control, male, whole body minus testis

text: w1118; Dnmt2 mutant/Dnmt2 mutant; +/+

text: whole body without testis

characteristic: tissue

text: endogenous small RNAs from Dnmt2 mutants; control, 10 day old, male, whole body minus testis


characteristic: INSDC last update

text: live

text: Generic

text: adult males, 10 days

text: Drosophila melanogaster

text: small RNAs (25-70 nucleotides)

text: Dnmt2 mutants; heat shock, male, whole body minus testis

text: w1118; Dnmt2 mutant/Dnmt2 mutant; +/+

text: whole body without testis

text: endogenous small RNAs from Dnmt2 mutants; heat shock, 10 day old, male, whole body minus testis


characteristic: INSDC secondary accession

text: live

text: Generic

text: adult males, 12 days

text: Drosophila melanogaster

text: small RNAs (25-70 nucleotides)

text: Dnmt2 mutants; 2 day recovery, male, whole body minus testis

text: w1118; Dnmt2 mutant/Dnmt2 mutant; +/+

text: whole body without testis

text: endogenous small RNAs from Dnmt2 mutants; 2 day recovery, 12 day old, male, whole body minus testis


HMEC 184A1 ABI SOLiD 3 1x50bp

text: Pacific Northwest National Laboratory - Environmental Molecular Sciences Laboratory

text: live

characteristic: INSDC status

text: Generic

text: These cells are human mammary epithelial cell line derived from reduction mammoplasty as described by Stampfer et. al (Stampfer, M.R., Hallowes, R. and Hackett, A.J., Growth of Normal Human Mammary Epithelial Cells in Culture. In Vitro 16:415-425, 1980. PMID: 6993343)

characteristic: description

text: Homo sapiens

text: HMEC replicate run


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: short term

text: University of Washington, Congenital Defects Lab. Ian Glass

characteristic: biomaterial provider

text: Primary Cell Culture

characteristic: biomaterial type

text: Fibroblasts, Fetal Skin, Abdomen

text: Fibroblasts, Fetal Skin, Abdomen, day 97 donor

text: day 97

characteristic: donor age

characteristic: donor id

text: male

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: short term

characteristic: SRA accession

text: Primary Cell Culture

text: Fibroblasts, Fetal Skin, Back

characteristic: cell type

text: Fibroblasts, Fetal Skin, Back, day 96 donor

text: day 96

text: male

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: short term

text: Primary Cell Culture

text: Fibroblasts, Fetal Skin, Biceps, Left

text: Fibroblasts, Fetal Skin, Biceps, Left, day 97 donor

text: day 97

text: male

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: short term

text: Primary Cell Culture

text: Fibroblasts, Fetal Skin, Biceps, Right

text: Fibroblasts, Fetal Skin, Biceps, Right, day 97 donor

characteristic: description

text: day 97

text: male

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

text: short term

characteristic: biomaterial provider

text: Primary Cell Culture

characteristic: biomaterial type

text: Fibroblasts, Fetal Skin, Quadriceps, Left, day 97 donor

text: day 97

text: male

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: short term

text: Primary Cell Culture

text: Fibroblasts, Fetal Skin, Quadriceps, Left

text: day 97

characteristic: donor age

characteristic: donor id

text: male

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: short term

text: Primary Cell Culture

text: Fibroblasts, Fetal Skin, Quadriceps, Right, day 97 donor

text: day 97

text: male

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: short term

characteristic: SRA accession

text: Primary Cell Culture

text: Fibroblasts, Fetal Skin, Quadriceps, Right

characteristic: cell type

text: day 97

text: male

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: short term

text: Primary Cell Culture

text: Fibroblasts, Fetal Skin, Scalp

text: Fibroblasts, Fetal Skin, Scalp, day 97 donor

text: day 97

text: male

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: short term

text: Primary Cell Culture

text: Fibroblasts, Fetal Skin, Upper Back

text: Fibroblasts, Fetal Skin, Upper Back, day 97 donor

text: day 97

text: male

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

characteristic: biomaterial provider

text: Primary Tissue

text: fetal

characteristic: collection method

text: Fetal Adrenal Gland primary tissue, day 113

characteristic: description

text: day 113

text: female

text: genomic DNA

text: Homo sapiens

text: UW

characteristic: tissue depot

text: Fetal Adrenal Gland

characteristic: tissue type

text: Generic sample from Homo sapiens