text: CAIQ

text: live

text: Generic

text: Nicotiana tabacum

text: cv. Xanthi nc

text: mock-inoculated tobacco leaves

text: leaves

text: 11dpi control

text: control


status: PUBLIC

characteristic: External Id

text: CAIQ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Nicotiana tabacum

characteristic: organism

text: cv. Xanthi nc

tag: attribute

characteristic: plant variety

text: virus-infected tobacco leaves

characteristic: time

text: leaves

characteristic: tissue

text: 11dpi infected

characteristic: title

text: Cucumber mosaic virus M strain

characteristic: viral infection


text: CAIQ

text: live

text: Generic

text: Nicotiana tabacum

text: cv. Xanthi nc

text: mock-inoculated tobacco leaves

text: leaves

text: 13dpi control

text: control


text: CAIQ

text: live

text: Generic

text: Nicotiana tabacum

text: cv. Xanthi nc

text: virus-infected tobacco leaves

text: leaves

text: 13dpi infected

text: Cucumber mosaic virus M strain


text: CAIQ

text: live

text: Generic

text: Nicotiana tabacum

text: cv. Xanthi nc

text: mock-inoculated tobacco leaves

text: leaves

text: 16dpi control

text: control


text: CAIQ

text: live

text: Generic

text: Nicotiana tabacum

text: cv. Xanthi nc

text: virus-infected tobacco leaves

text: leaves

text: 16dpi infected

text: Cucumber mosaic virus M strain


text: CAIQ

text: live

text: Generic

text: Nicotiana tabacum

text: cv. Xanthi nc

text: mock-inoculated tobacco leaves

text: leaves

text: 20dpi control

text: control


text: CAIQ

text: live

text: Generic

text: Nicotiana tabacum

text: cv. Xanthi nc

text: virus-infected tobacco leaves

text: leaves

text: 20dpi infected

text: Cucumber mosaic virus M strain


text: CAIQ

text: live

text: Generic

text: Nicotiana tabacum

text: cv. Xanthi nc

text: mock-inoculated and virus-infected tobacco leaves

text: leaves

text: mock and infected tobacco RNA-Seq

text: mixture of uninfected and Cucumber mosaic virus M strain infected leaves


text: Jin Lab, Human Genetics, Emory University

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: H1 human ES cell

text: Integrating 5 Hydroxymethylcytosine into the Epigenetic Landscape of Human Embryonic Stem Cells Input

text: Non-enriched input genomic DNA

characteristic: treatment


characteristic: External Id

text: live

text: Generic

text: Homo sapiens

text: H1 human ES cell

text: Integrating 5 Hydroxymethylcytosine into the Epigenetic Landscape of Human Embryonic Stem Cells 5hmC

text: 5-hmC enriched genomic DNA


text: Salomon Lab, Molecular & Experimental Medicine, The Scripps Research Institute

characteristic: INSDC center name

text: live

text: Generic

text: Acute T Cell Leukemia

characteristic: disease state

text: Homo sapiens

text: wildtype

characteristic: sample type

text: Jurkat DNA


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Acute T Cell Leukemia

text: Homo sapiens

text: hypermethylated

text: CpG Methylase (M.SssI) treated Jurkat DNA


text: Bioinformatics, Agios Pharmaceuticals

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Homo sapiens

text: brain

text: brain


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

characteristic: organism

text: kidney

text: kidney


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: liver

text: liver

characteristic: tissue


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: brain (MAQC)

text: brain (MAQC)

characteristic: title


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: universal human reference (MAQC)

text: UHR (MAQC)


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: muscle

text: muscle


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: testis

text: testis


text: Bioinformatics, Gritstone Oncology

text: live

text: Generic

text: Mus musculus

text: brain

text: brain


text: Bioinformatics, Gritstone Oncology

text: live

text: Generic

text: Mus musculus

text: kidney

text: kidney


text: Bioinformatics, Gritstone Oncology

text: live

text: Generic

text: Mus musculus

text: liver

text: liver


text: Bioinformatics, Gritstone Oncology

text: live

text: Generic

text: Mus musculus

text: muscle

text: muscle


text: Bioinformatics, Gritstone Oncology

text: live

text: Generic

text: Mus musculus

text: testis

text: testis


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Rattus norvegicus

text: brain

text: brain


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Rattus norvegicus

text: testis

text: testis


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Macaca mulatta

text: brain

text: brain


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Macaca mulatta

text: ileum

text: ileum


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Macaca mulatta

text: kidney

text: kidney


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Macaca mulatta

text: liver

text: liver


text: Bioinformatics, Agios Pharmaceuticals

text: live

text: Generic

text: Macaca mulatta

text: testis

text: testis


text: Shilatifard, Stowers Institute for Medical Research

text: live

text: Generic

characteristic: cell passage

text: mES

characteristic: cell type

text: Pol II 8WG16 Covance (Mono)

characteristic: chip antibody

text: Mus musculus

text: C57BL/6 (female) x 129/S (male)

characteristic: strain


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: mES

text: Mus musculus

text: C57BL/6 (female) x 129/S (male)


text: live

text: Generic

text: mES

text: Lin et al. 2010 (Mol. Cell)

text: Mus musculus

text: C57BL/6 (female) x 129/S (male)


text: live

text: Generic

text: mES

text: Lin et al. 2010 (Mol. Cell.)

text: Mus musculus

text: C57BL/6 (female) x 129/S (male)


text: live

text: Generic

text: colon cancer cell line

text: Pol II 8WG16 Covance (Mono)

text: Homo sapiens


text: live

text: Generic

text: colon cancer cell line

text: Lin et al. 2010 (Mol. Cell)

text: Homo sapiens


text: live

text: Generic

text: colon cancer cell line

text: Homo sapiens


text: MPG Operations

text: live

text: Generic

text: Native Plant Community

text: LSU rDNA

characteristic: latitude

characteristic: longitude

text: uncultured Glomeromycotina

text: MPG

characteristic: site name

text: uncultured Glomeromycota from Native Plant Community


text: MPG Operations

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Cheatgrass Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: MPG

text: uncultured Glomeromycota from Cheatgrass Invasion


text: MPG Operations

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Knapweed Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: MPG

text: uncultured Glomeromycota from Knapweed Invasion


text: MPG Operations

text: live

text: Generic

characteristic: SRA accession

text: Leafy Spurge Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

characteristic: organism

text: MPG

text: uncultured Glomeromycota from Leafy Spurge Invasion


text: MPG Operations

text: live

text: Generic

text: Native Plant Community

text: LSU rDNA

text: uncultured Glomeromycotina

text: Sapphire

characteristic: title


text: MPG Operations

text: live

text: Generic

text: Knapweed Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: Sapphire


text: MPG Operations

text: live

text: Generic

text: Leafy Spurge Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: Sapphire


text: MPG Operations

text: live

text: Generic

text: Native Plant Community

text: LSU rDNA

text: uncultured Glomeromycotina

text: University


text: MPG Operations

text: live

text: Generic

text: Cheatgrass Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: University


text: MPG Operations

text: live

text: Generic

text: Knapweed Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: University


text: MPG Operations

text: live

text: Generic

text: Leafy Spurge Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: University


North Hills_12

text: MPG Operations

text: live

text: Generic

text: Native Plant Community

text: LSU rDNA

text: uncultured Glomeromycotina

text: North Hills


North Hills_13

text: MPG Operations

text: live

text: Generic

text: Cheatgrass Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: North Hills


North Hills_14

text: MPG Operations

text: live

text: Generic

text: Knapweed Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: North Hills


North Hills_15

text: MPG Operations

text: live

text: Generic

text: Leafy Spurge Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: North Hills


Granite Creek_16

text: MPG Operations

text: live

text: Generic

text: Native Plant Community

text: LSU rDNA

text: uncultured Glomeromycotina

text: Granite Creek


Granite Creek_17

text: MPG Operations

text: live

text: Generic

text: Cheatgrass Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: Granite Creek


Granite Creek_18

text: MPG Operations

text: live

text: Generic

text: Knapweed Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: Granite Creek


Granite Creek_19

text: MPG Operations

text: live

text: Generic

text: Leafy Spurge Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: Granite Creek


text: MPG Operations

text: live

text: Generic

text: Native Plant Community

text: LSU rDNA

text: uncultured Glomeromycotina

text: Indreland


text: MPG Operations

text: live

text: Generic

text: Cheatgrass Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: Indreland


text: MPG Operations

text: live

text: Generic

text: Knapweed Invasion

text: LSU rDNA

text: uncultured Glomeromycotina

text: Indreland


text: P. Klein Lab, Department of Horticulture, Texas A&M University

text: live

text: Generic

characteristic: line

text: Sorghum bicolor

characteristic: rta version

text: Roots from 9d sorghum seedings treated with 20µM exogenous ABA for 27 hrs

text: Root

characteristic: tissue

text: 20µM exogenous ABA for 27 hrs

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Sorghum bicolor

text: Roots from 9d sorghum seedings treated with 20% PEG-8000 for 27 hrs

text: Root

text: 20% PEG-8000


text: live

text: Generic

text: Sorghum bicolor

text: Roots from untreated 9d sorghum seedings

text: Root


text: live

text: Generic

text: Sorghum bicolor

text: Roots from 9d sorghum seedings treated with 0.2M NaOH for 27 hrs

text: Root

text: 0.2M NaOH


text: live

text: Generic

text: Sorghum bicolor

text: Shoots from 9d sorghum seedings treated with 20µM exogenous ABA for 27 hrs

text: Shoot

text: 20µM exogenous ABA for 27 hrs


text: live

text: Generic

text: Sorghum bicolor

text: Shoots from 9d sorghum seedings treated with 20% PEG-8000 for 27 hrs

text: Shoot

text: 20% PEG-8000


text: live

text: Generic

text: Sorghum bicolor

text: Shoots from untreated 9d sorghum seedings

text: Shoot


text: live

text: Generic

text: Sorghum bicolor

text: Shoots from 9d sorghum seedings treated with 0.2M NaOH for 27 hrs

text: Shoot

text: 0.2M NaOH


text: ENCODE DCC

text: live

text: Generic

text: CTCF

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody description

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: ScienCell

characteristic: biomaterial provider

text: HMF

characteristic: cell

text: human mammary fibroblasts

characteristic: cell description

text: Human

characteristic: cell organism

text: F

characteristic: cell sex

text: Homo sapiens

characteristic: replicate

text: HMF


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

text: rabbit polyclonal

text: Millipore

text: Lonza

text: AoAF

text: aortic adventitial fibroblast cells

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: Human

text: F

text: Homo sapiens

characteristic: organism

text: AoAF

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: CTCF

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: ATCC

characteristic: biomaterial provider

text: neuroblastoma cell line, treatment: differentiated with retinoic acid. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

text: cancer

text: ectoderm

text: Human

text: F

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CTCF

text: rabbit polyclonal

text: Millipore

text: ATCC

characteristic: cell

text: embryonic kidney. (PMID: 11967234)

characteristic: cell description

text: cancer

text: endoderm

text: Human

characteristic: cell organism

text: U

characteristic: cell sex

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878

text: lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: Human

text: F

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: CTCF

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12875

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, Treatment: Epstein-Barr Virus transformed

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Input

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG09319

characteristic: biomaterial provider

characteristic: cell

text: gum tissue fibroblasts from apparently heathly 24 year old

characteristic: cell description

text: normal

text: mesoderm

text: Human

characteristic: cell organism

text: F

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Input

text: ATCC

text: Jurkat

text: T lymphoblastoid derived from an acute T cell leukemia, The Jurkat cell line was established from the peripheral blood of a 14 year old boy by Schneider et al., and was originally designated JM. - ATCC. (PMID: 68013)

text: cancer

text: mesoderm

text: Human

text: M

characteristic: cell sex

text: Homo sapiens

characteristic: replicate

text: Jurkat


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

characteristic: antibody vendor name

text: ScienCell

text: HRPEpiC

text: Human Retinal Pigment Epithelial Cells

text: ectoderm

characteristic: cell lineage

text: Human

text: U

text: Homo sapiens

text: HRPEpiC


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

text: Lonza

text: HUVEC

text: umbilical vein endothelial cells

text: normal

characteristic: cell karyotype

text: mesoderm

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: HUVEC

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

text: rabbit polyclonal

text: Millipore

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12864

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mesoderm

text: Human

characteristic: cell organism

text: M

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

text: ATCC

text: BJ

text: skin fibroblast, The line was established from skin taken from normal foreskin. - ATCC. (PMID: 9916803)

text: normal

text: ectoderm

text: Human

text: M

characteristic: cell sex

text: Homo sapiens

characteristic: replicate

text: BJ


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG04449

text: fetal buttock/thigh fibroblast

text: normal

characteristic: cell karyotype

text: Human

text: M

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

text: rabbit polyclonal

text: Millipore

text: ATCC

characteristic: biomaterial provider

text: retinoblastoma (PMID: 844036)

text: Human

text: F

text: Homo sapiens

characteristic: organism

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: CTCF

text: rabbit polyclonal

text: Millipore

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG09309

characteristic: cell

text: adult toe fibroblast from apparently healthy 21 year old

characteristic: cell description

text: 7% of the cells examined showing random chromosome loss/gain -Coriell

text: mesoderm

characteristic: cell lineage

text: Human

characteristic: cell organism

text: F

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody description

text: Millipore

text: ScienCell

text: HPAF

text: Human Pulmonary Artery Fibroblasts

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

characteristic: replicate

text: HPAF


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Input

text: Lonza

characteristic: biomaterial provider

text: SAEC

text: Small Airway Epithelial Cells

text: normal

characteristic: cell karyotype

text: Human

text: U

text: Homo sapiens

text: SAEC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: CTCF

text: rabbit polyclonal

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: ATCC

text: liver carcinoma

text: cancer

text: endoderm

text: Human

text: M

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: CTCF

text: rabbit polyclonal

text: Millipore

text: Lonza

text: SAEC

characteristic: cell

text: Small Airway Epithelial Cells

characteristic: cell description

text: normal

text: Human

characteristic: cell organism

text: U

text: Homo sapiens

text: SAEC


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

characteristic: antibody

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12873

text: mesoderm

characteristic: cell lineage

text: Human

text: F

characteristic: cell sex

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Input

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM06990

characteristic: biomaterial provider

text: Lymphoblastoid, International HapMap Project, CEPH/Utah, Treatment: Epstein-Barr Virus transformed

text: normal

characteristic: cell karyotype

text: mesoderm

text: Human

text: F

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

text: ATCC

characteristic: cell

text: embryonic kidney. (PMID: 11967234)

characteristic: cell description

text: cancer

text: endoderm

text: Human

characteristic: cell organism

text: U

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: CTCF

text: rabbit polyclonal

text: Millipore

text: ATCC

text: Human promyelocytic leukemia cells. (PMID: 276884)

text: cancer

text: Human

text: F

characteristic: cell sex

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

text: ATCC

characteristic: biomaterial provider

text: colorectal adenocarcinoma. (PMID: 1939345)

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: Human

text: M

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

characteristic: antibody vendor name

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: organism

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Input

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

text: endoderm

text: Human

characteristic: cell organism

text: M

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12872

characteristic: biomaterial provider

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, Treatment: Epstein-Barr Virus transformed

text: mesoderm

text: Human

text: M

characteristic: cell sex

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

characteristic: antibody vendor name

text: ATCC

text: neuroblastoma cell line, treatment: differentiated with retinoic acid. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: Human

text: F

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: CTCF

text: rabbit polyclonal

text: Millipore

characteristic: cell

text: fetal buttock/thigh fibroblast

text: normal

text: Human

text: M

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

text: ScienCell

characteristic: biomaterial provider

text: HA-sp

text: Human astrocytes spinal cord

characteristic: cell description

text: normal

text: Astrocytic

text: Human

characteristic: cell organism

text: U

text: Homo sapiens

text: HA-sp


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Input

characteristic: antibody

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG04450

text: fetal lung fibroblast

text: normal

text: mesoderm

text: Human

text: M

characteristic: cell sex

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Input

text: ScienCell

text: HEEpiC

text: Human Esophageal Epithelial Cells

text: endoderm

characteristic: cell lineage

text: Human

text: U

text: Homo sapiens

text: HEEpiC


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CTCF

text: rabbit polyclonal

text: Millipore

characteristic: antibody vendor name

text: ScienCell

text: HPF

characteristic: cell

text: Human Pulmonary Fibroblasts isolated from lung tissue

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: HPF

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

text: Human

characteristic: cell organism

text: F

text: Homo sapiens


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Input

characteristic: antibody

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12801

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah, Treatment: Epstein-Barr Virus transformed

text: mesoderm

text: Human

text: M

characteristic: cell sex

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Input

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG04449

text: fetal buttock/thigh fibroblast

text: normal

text: Human

text: M

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Input

text: ScienCell

text: HVMF

characteristic: cell

text: Human Villous Mesenchymal Fibroblast Cells

text: Human

text: U

text: Homo sapiens

text: HVMF


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: Coriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878

text: lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

characteristic: cell lineage

text: Human

text: F

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

text: Coriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM06990

characteristic: biomaterial provider

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

text: Human

characteristic: cell organism

text: F

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: CTCF

text: rabbit polyclonal

text: Millipore

text: Lonza

text: NHEK

text: epidermal keratinocytes

text: normal

text: ectoderm

text: Human

text: F

characteristic: cell sex

text: Homo sapiens

characteristic: replicate

text: NHEK


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

text: ScienCell

text: HPAF

characteristic: cell

text: Human Pulmonary Artery Fibroblasts

text: Human

text: U

text: Homo sapiens

text: HPAF


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: ScienCell

text: HBMEC

text: Human Brain Microvascular Endothelial Cells

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: HBMEC

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

text: Millipore

text: Coriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12801

characteristic: biomaterial provider

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: Human

characteristic: cell organism

text: M

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: CTCF

text: rabbit polyclonal

text: Millipore

text: ScienCell

text: HEEpiC

text: Human Esophageal Epithelial Cells

text: endoderm

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

text: HEEpiC


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

text: ScienCell

text: HCF

characteristic: cell

text: Human Cardiac Fibroblasts

text: mesoderm

text: Human

text: U

text: Homo sapiens

characteristic: replicate

text: HCF


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG10803

text: abdominal skin fibroblasts from apparently heathly 22 year old

text: 8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY -Coriell

characteristic: cell karyotype

text: mesoderm

text: Human

text: M

text: Homo sapiens

characteristic: organism

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

text: ATCC

characteristic: biomaterial provider

text: liver carcinoma

characteristic: cell description

text: cancer

text: endoderm

characteristic: cell lineage

text: Human

characteristic: cell organism

text: M

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Input

text: Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/

text: acute promyelocytic leukemia cell line. (PMID: 1995093)

text: cancer

text: Human

text: U

characteristic: cell sex

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

text: Input

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG09309

characteristic: cell

text: adult toe fibroblast from apparently healthy 21 year old

text: 7% of the cells examined showing random chromosome loss/gain -Coriell

characteristic: cell karyotype

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Input

characteristic: antibody

text: ScienCell

characteristic: biomaterial provider

text: HA-sp

text: Human astrocytes spinal cord

characteristic: cell description

text: normal

text: Astrocytic

characteristic: cell lineage

text: Human

text: U

text: Homo sapiens

text: HA-sp


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

text: ATCC

text: cervical carcinoma

text: cancer

text: ectoderm

text: Human

characteristic: cell organism

text: F

text: Homo sapiens


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Input

text: Lonza

text: NHDF-neo

text: Neonatal Human Dermal Fibroblasts

text: mesoderm

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

text: NHDF-neo


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG09319

characteristic: cell

text: gum tissue fibroblasts from apparently heathly 24 year old

text: normal

characteristic: cell karyotype

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12875

characteristic: biomaterial provider

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, Treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

text: rabbit polyclonal

text: Millipore

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12865

text: mesoderm

characteristic: cell lineage

text: Human

characteristic: cell organism

text: F

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: Lonza

text: HRE

characteristic: cell

text: Human Renal Epithelial cells (normal)

text: normal

text: mesoderm

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

text: HRE


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

text: Human

text: F

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

text: rabbit polyclonal

text: Millipore

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12873

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: ScienCell

text: HCFaa

text: Human Cardiac Fibroblasts-Adult Atrial

text: Human

characteristic: cell organism

text: F

text: Homo sapiens

text: HCFaa


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cancer

text: mesoderm

characteristic: cell lineage

text: Human

text: F

characteristic: cell sex

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

characteristic: cell description

characteristic: cell karyotype

text: mesoderm

text: Human

text: M

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

text: ScienCell

text: HCPEpiC

text: Human Choroid Plexus Epithelial Cells

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: HCPEpiC

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

characteristic: antibody vendor name

text: Lonza

characteristic: biomaterial provider

text: AoAF

characteristic: cell

text: aortic adventitial fibroblast cells

text: normal

text: mesoderm

text: Human

characteristic: cell organism

text: F

text: Homo sapiens

text: AoAF


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

text: ScienCell

text: HCM

text: Human Cardiac Myocytes

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

text: HCM


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12874

text: mesoderm

text: Human

text: M

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody

text: mesoderm

text: Human

text: M

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CTCF

text: rabbit polyclonal

text: Millipore

characteristic: antibody vendor name

text: ScienCell

characteristic: biomaterial provider

text: HBMEC

characteristic: cell

text: Human Brain Microvascular Endothelial Cells

text: Human

characteristic: cell organism

text: U

text: Homo sapiens

text: HBMEC


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Input

text: Lonza

text: NHEK

text: epidermal keratinocytes

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: Human

text: F

characteristic: cell sex

text: Homo sapiens

text: NHEK


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

text: ScienCell

text: HBMEC

text: Human

text: U

text: Homo sapiens

characteristic: replicate

text: HBMEC


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CTCF

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

text: Lonza

text: NHEK

text: epidermal keratinocytes

text: normal

text: ectoderm

text: Human

text: F

text: Homo sapiens

characteristic: organism

text: NHEK

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

text: rabbit polyclonal

text: Millipore

characteristic: antibody vendor name

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: colorectal adenocarcinoma. (PMID: 1939345)

text: cancer

text: endoderm

text: Human

characteristic: cell organism

text: M

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: CTCF

text: rabbit polyclonal

text: Millipore

text: Lonza

text: HUVEC

text: umbilical vein endothelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

text: HUVEC


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

text: rabbit polyclonal

text: Millipore

characteristic: antibody vendor name

text: ScienCell

characteristic: biomaterial provider

text: HPAF

text: Human Pulmonary Artery Fibroblasts

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: HPAF

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: CTCF

text: rabbit polyclonal

text: Millipore

text: ATCC

text: BJ

characteristic: cell

text: skin fibroblast, The line was established from skin taken from normal foreskin. - ATCC. (PMID: 9916803)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

text: Human

characteristic: cell organism

text: M

text: Homo sapiens

text: BJ


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody description

text: Millipore

text: Lonza

text: HMEC

text: Human Mammary Epithelial Cells

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

text: HMEC


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Input

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12864

text: mesoderm

characteristic: cell lineage

text: Human

text: M

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: Lonza

characteristic: biomaterial provider

text: HMEC

text: Human Mammary Epithelial Cells

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: HMEC

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

text: Input

text: ATCC

characteristic: cell

text: liver carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

text: Human

characteristic: cell organism

text: M

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: Input

characteristic: antibody

text: Lonza

text: HUVEC

text: umbilical vein endothelial cells

text: normal

text: mesoderm

text: Human

text: U

text: Homo sapiens

text: HUVEC


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG10803

text: abdominal skin fibroblasts from apparently heathly 22 year old

text: 8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY -Coriell

text: mesoderm

text: Human

text: M

characteristic: cell sex

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: ATCC

characteristic: biomaterial provider

text: mammary gland, adenocarcinoma. (PMID: 4357757)

text: cancer

text: Human

text: F

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: Input

text: ScienCell

text: HCFaa

characteristic: cell

text: Human Cardiac Fibroblasts-Adult Atrial

characteristic: cell description

text: Human

characteristic: cell organism

text: F

text: Homo sapiens

text: HCFaa


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

text: mesoderm

characteristic: cell lineage

text: Human

text: M

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

text: Input

text: ScienCell

text: HMF

text: human mammary fibroblasts

text: Human

text: F

characteristic: cell sex

text: Homo sapiens

text: HMF


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

characteristic: biomaterial provider

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: Input

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12872

characteristic: cell

characteristic: cell description

text: mesoderm

text: Human

text: M

text: Homo sapiens

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

text: retinoblastoma (PMID: 844036)

text: Human

characteristic: cell organism

text: F

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: Input

text: ATCC

text: embryonic kidney. (PMID: 11967234)

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: Human

text: U

characteristic: cell sex

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: ATCC

characteristic: biomaterial provider

text: retinoblastoma (PMID: 844036)

text: Human

text: F

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: CTCF

text: rabbit polyclonal

text: Millipore

text: Corriell; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG04450

characteristic: cell

text: fetal lung fibroblast

characteristic: cell description

text: normal

text: mesoderm

text: Human

text: M

text: Homo sapiens

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

text: BJ

text: normal

characteristic: cell karyotype

text: ectoderm

text: Human

characteristic: cell organism

text: M

text: Homo sapiens

text: BJ


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: Input

text: ScienCell

text: HRPEpiC

text: Human Retinal Pigment Epithelial Cells

text: ectoderm

characteristic: cell lineage

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

text: HRPEpiC


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

text: Lonza

characteristic: biomaterial provider

text: AoAF

text: aortic adventitial fibroblast cells

text: normal

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: organism

text: AoAF


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

text: Input

text: ScienCell

text: HPF

characteristic: cell

text: Human Pulmonary Fibroblasts isolated from lung tissue

characteristic: cell description

text: Human

text: U

text: Homo sapiens

characteristic: replicate

text: HPF


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: Input

text: ATCC

text: colorectal carcinoma (PMID: 7214343)

text: cancer

text: endoderm

text: Human

text: M

text: Homo sapiens

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

text: Human promyelocytic leukemia cells. (PMID: 276884)

text: cancer

characteristic: cell karyotype

text: Human

characteristic: cell organism

text: F

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: Input

text: ScienCell

text: HCPEpiC

text: Human Choroid Plexus Epithelial Cells

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

text: HCPEpiC


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

characteristic: biomaterial provider

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, Treatment: Epstein-Barr Virus transformed

text: mesoderm

characteristic: cell lineage

text: Human

text: F

text: Homo sapiens


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

text: Input

text: Lonza

text: HRE

characteristic: cell

text: Human Renal Epithelial cells (normal)

characteristic: cell description

text: normal

text: mesoderm

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: HRE


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: CTCF

text: rabbit polyclonal

characteristic: antibody description

characteristic: antibody target description

text: Millipore

characteristic: antibody vendor name

text: Lonza

text: SAEC

text: Small Airway Epithelial Cells

text: normal

text: Human

text: U

text: Homo sapiens

characteristic: replicate

text: SAEC


text: College of Veterinary Science & Animal Husbandry

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: Total RNA was isolated from mammary gland of four different induced lactogenic stages of buffalo (0th, 7th, 14th and 21st day of Estrogen-Progesterone treatment). Differential ESTs were identified by Modified Suppression Subtractive Hybridization.

characteristic: description

text: Mammary tissue post estrogen-progesterone treatment

characteristic: dev-stage

characteristic: lab-host

text: Mammary gland

characteristic: organ

text: Bubalus bubalis

text: dT

text: dT

text: Female

characteristic: sex

text: Surti breed

characteristic: strain

text: Mammary tissue

characteristic: tissue-type

text: Mammary tissue of Estrogen-progesterone treated female Buffalo

characteristic: title

characteristic: vector


characteristic: External Id

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Genomic DNA was sheared hydrodynamically into approx. 1.5 kb fragments using a HydroShear apparatus. Sheared DNA was used as inserts for the genomic library. The genomic library was assembled using the ZAP II phage as vector (ZAP II Predigested EcoRI/CIAP-treated Vector kit, Stratagene) and a modification of the linker-adaptor strategy (Jomar et al 2009).

text: Pb01; ATCC: MYA-826

characteristic: isolate

text: Paracoccidioides brasiliensis

characteristic: organism

text: Paracoccidioides brasiliensis Pb01 genomic library

text: LAMBDA ZAP II


Bupleurum chinense

text: Implad

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Bupleurum chinense

text: Transcriptome analysis of Bupleurum chinense with focus on genes involved in biosynthesis of saikosaponins


wallaby 454 PE sequencing

text: University of Connecticut

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: HTS sequencing of tammar genome

characteristic: description

text: Notamacropus eugenii

text: WGS of Tammar Genome


Ugandan Pool1

text: Animal Health and Veterinary Laboratories Agency

text: live

text: Generic

text: pool of 8 individual faecal samples

text: gut metagenome

text: Samples from 31 individuals


PADem

text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags of Port Arthur marine sediment dredging

text: marine sediment metagenome

text: Comparison of carboxylate platform demonstration plant to laboratory screens using the same inoculum


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform demonstration plant collected at day 30 operated with lime pretreated sorghum at 40C

text: metagenomes

text: Comparison of the carboxylate platform demonstration plant to laboratory screens using the same inoculum


Root

text: Oregon St Univ - Center for Genome Research & Biocomputing

text: live

text: Generic

text: Populus trichocarpa

text: Root


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C

text: metagenomes


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 40 deg C

text: metagenomes


Leaf

text: live

text: Generic

text: Populus trichocarpa

text: Leaf


Fall Bud

text: live

text: Generic

text: Populus trichocarpa

text: Fall Bud


Winter Bud

text: live

text: Generic

text: Populus trichocarpa

text: Winter Bud


Spring Bud

text: live

text: Generic

text: Populus trichocarpa

text: Spring Bud


Male catkin

text: live

text: Generic

text: Populus trichocarpa

text: Male Catkin


Female Catkin

text: live

text: Generic

text: Populus trichocarpa

text: Female Catkin


Phloem

text: live

text: Generic

text: Populus trichocarpa

text: Phloem


Xylem

text: live

text: Generic

text: Populus trichocarpa

text: Xylem


Translocation

text: Johns Hopkins University

text: live

text: Generic

text: Homo sapiens

text: Pooled breakpoint regions


Neurospheres, Cortex Derived HuFNSC03

text: Gene Expression Omnibus

text: live

text: Generic

text: Keith Ligon, Harvard

characteristic: biomaterial provider

text: Primary Cell Culture

characteristic: biomaterial type

text: Neurospheres, Cortex Derived

characteristic: cell type

text: Neurocult+EGF+FGF

characteristic: culture conditions

text: Neurosphere Cultured Cells, Cortex Derived, HuFNSC03

characteristic: donor age

text: Disease Free

characteristic: donor health status

characteristic: donor id

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


PSIseq

characteristic: External Id

text: UNC at Chapel Hill

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: 36bp SE reads from Illumina Genome Analyzer I. Reads generated from a pooled hybrid population of Drosophila (30 females). Hybrids were created via phenotype-based selection of a food avoidance trait (expressed by D. simulans) introgressed into a genome expressing the opposite trait (preference, D. sechellia). More detail: F1 hybrid D. sim/D. sec flies were made by crossing D. simulans (c167.4) females to D. sechellia (SynA) males. F1 hybrid females were backcrossed to D. sechellia males. F2 hybrids were subjected to a food preference assay (see Earley & Jones 2011; Dworkin & Jones 2009). Hybrids showing repulsion to D. sechellia-prefferred food (that is, hybrids expressing D. simulans trait) were selected and again backcrossed to D. sechellia males. This cycle - assay, selection, and backcross - was repeated for 15 generations. 15th generation flied were inbred for 2-3 generations then sequenced.

text: Drosophila sechellia x Drosophila simulans

text: Mapping Quantitative and Complex Traits Using Phenotype-based Selection and Introgression with Next-Gen Sequencing

characteristic: title


Sample Kimchi K1-1

text: Jeju National University

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

characteristic: organism

text: Sample of Weissella koreensis


Sample Kimchi K1-2

text: Jeju National University

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: 454 sequencing of Weissella koreensis

characteristic: description

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K1-3

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K1-4

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K1-5

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K1-6

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K1-7

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K1-8

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K1-9

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K1-10

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K7-1

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K7-2

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K7-3

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K7-4

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K7-5

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K7-6

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K7-7

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K7-8

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K7-9

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K7-10

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K8-1

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K8-2

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K8-3

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K8-4

text: Jeju National University

text: live

text: Generic

text: Bacterial 16S rRNA gene metagenomic sequences of K8-4 kimchi sample

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K8-5

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K8-6

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K8-7

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K8-8

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K8-9

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K8-10

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K9-1

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K9-2

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K9-3

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K9-4

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K9-5

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K9-6

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K9-7

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K9-8

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K9-9

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K9-10

text: Jeju National University

text: live

text: Generic

text: Bacterial 16S rRNA gene metagenomic sequences of K9-10 kimchi sample

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K10-1

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K10-2

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K10-3

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K10-4

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K10-5

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K10-6

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K10-7

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K10-8

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K10-9

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K10-10

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K3-1

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K3-2

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K3-3

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K3-4

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K3-5

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K3-6

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K3-7

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K3-8

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K3-9

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K3-10

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K4-1

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K4-2

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K4-3

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K4-4

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K4-5

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K4-6

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K4-7

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K4-8

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K4-9

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K4-10

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K5-1

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K5-2

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K5-3

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K5-4

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K5-5

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K5-6

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K5-7

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K5-8

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K5-9

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K5-10

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K6-1

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K6-2

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K6-3

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K6-4

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K6-5

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K6-6

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K6-7

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K6-8

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K6-9

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K6-10

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K2-1

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K2-2

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K2-3

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K2-4

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K2-5

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K2-6

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K2-7

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K2-8

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K2-9

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


Sample Kimchi K2-10

text: Jeju National University

text: live

text: Generic

text: 454 sequencing of Weissella koreensis

text: Weissella koreensis

text: Sample of Weissella koreensis


rainbow trout

text: USDA Agriculture Research Service

text: live

text: Generic

text: Tissue samples (gill, brain, liver, spleen, kidney and muscle) from fish exposed to stressors of the aquaculture production environment (high salinity, high temperature, low temperature, low dissolved oxygen/high carbon dioxide, crowding, and non-stressed controls).

text: Oncorhynchus mykiss

text: Oncorhynchus mykiss


text: Massachusetts Institute of Technology

text: live

text: Generic

text: marine metagenome


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: culture-collection

text: Coemansia reversa NRRL 1564

text: Coemansia reversa NRRL 1564

text: NRRL 1564

characteristic: strain

text: Generic sample from Coemansia reversa NRRL 1564


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Water sample taken from 800m at MOOMZ station 3 off the coast of Chile

text: marine metagenome

text: Moomz1 800m


text: Massachusetts Institute of Technology

text: live

text: Generic

text: marine metagenome

text: Moomz2 35m DNA


text: Massachusetts Institute of Technology

text: live

text: Generic

text: marine metagenome

text: Moomz2 50m DNA


text: Massachusetts Institute of Technology

text: live

text: Generic

text: marine metagenome

text: Moomz2 110m DNA


text: Massachusetts Institute of Technology

text: live

text: Generic

text: marine metagenome

text: Moomz3 50m DNA


text: University of Edinburgh

text: live

text: Generic

text: Culture taken from sputum of a patient with cystic fibrosis.

text: Staphylococcus aureus

text: ED83 - Adaptive evolution of Staphylococcus aureus during chronic endobronchial infection of a cystic fibrosis patient


text: University of Edinburgh

text: live

text: Generic

text: Staphylococcus aureus

text: ED84 - Adaptive evolution of Staphylococcus aureus during chronic endobronchial infection of a cystic fibrosis patient


text: University of Edinburgh

text: live

text: Generic

text: Staphylococcus aureus

text: ED86 - Adaptive evolution of Staphylococcus aureus during chronic endobronchial infection of a cystic fibrosis patient


text: Massachusetts Institute of Technology

text: live

text: Generic

text: marine metagenome

text: Moomz3 110m DNA


text: Massachusetts Institute of Technology

text: live

text: Generic

text: marine metagenome

text: Moomz1 15m DNA


Initial soil

text: Université Pierre et Marie Curie

text: live

text: Generic

text: This sample contains the 16S rRNA sequences from the initial sampled soil

text: Bacteria

text: Initial sampled soil


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: Each microcosm contained 400 g soil, maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 3 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: uncultured bacterium

text: Non-amended control, day 3, replicate 1


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: batch

text: James Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cells received from the James Thomson laboratory. Cells are from the H1 line and are differentiated into trophoblast by treatment with BMP4.

text: H1 cells were cultured in mTeSR1 medium without bFGF containing 50ng/mL BMP4 for 5 days

characteristic: differentiation method

text: Embryonic stem cell differentiated into trophoblast by treatment with BMP4

characteristic: differentiation stage

characteristic: line

text: Embryonic Stem Cell

characteristic: lineage

characteristic: medium

text: genomic DNA

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: James Thomson Laboratory

text: Cell Line

text: Human embryonic stem cells received from the James Thomson laboratory. Cells are from the H1 line and are differentiated into mesenchymal stem cells.

text: Publication in progress

text: Embryonic stem cell differentiated into mesenchymal stem cells

text: Embryonic Stem Cell

text: Publication in progress

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: organism

text: male

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: batch

text: James Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cells received from the James Thomson laboratory. Cells are from the H1 line and are differentiated into neural progenitor cells.

characteristic: description

text: Publication in progress

text: Embryonic stem cell differentiated into neural progenitor cells

text: Embryonic Stem Cell

text: Publication in progress

text: genomic DNA

text: Homo sapiens

text: Between 20 and 30

text: male


text: Gene Expression Omnibus

text: live

text: Generic

text: James Thomson Laboratory

text: Cell Line

text: Human embryonic stem cells received from the James Thomson laboratory. Cells are from the H1 line and are differentiated into mesendoderm by treatment with BMP4.

text: H1 cells in E8 medium contatin 5ng/mL BMP4 and 25ng/mL Activin A for 2 days

characteristic: differentiation method

text: Embryonic stem cell differentiated into mesendoderm by treatment with BMP4

characteristic: differentiation stage

characteristic: line

text: Embryonic Stem Cell

characteristic: lineage

characteristic: medium

text: genomic DNA

text: Homo sapiens

text: Between 20 and 30

characteristic: passage

text: male

characteristic: sex


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: iPSC 19.11-2

text: James Thomson Laboratory

text: Cell Line

text: Human induced pluripotent stem cell line derived from foreskin fibroblasts, isolated as described by Yu, J. et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324, 797-801 (2009).

text: As described by Yu, J. et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324, 797-801 (2009).

text: Induced pluripotent stem cell

text: iPS 19.11

text: Induced pluripotent stem cell line derived from foreskin fibroblasts

text: mTeSR

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: iPSC 6.9-2

characteristic: batch

text: James Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

text: Induced pluripotent stem cell

text: iPS 6.9

text: mTeSR

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

text: Generic sample from Homo sapiens

characteristic: title


run1 for squirrel transcriptome

text: University of Minnesota Duluth

text: live

text: Generic

text: These reads include skeletal muscle and white adipose tissue samples from October active, January torpid, and January active (interbout arousal) animals. Each timepoint is from 6 pooled individual RNA - 3 males and 3 females.

characteristic: description

text: Ictidomys tridecemlineatus

text: 454 Transcriptome for Ictidomys tridecemlineatus, six timepoints from two tissues


Genome sequencing

text: UW-Madison

text: live

text: Generic

text: Mycobacterium avium subspecies paratuberculosis isolated from the Arabian Camels (Camelus dromedarius)in Saudi Arabia.

text: Mycobacterium avium subsp. paratuberculosis

text: Genome-wide Analysis of the Emerging Infection with Mycobacterium avium subspecies paratuberculosis in the Arabian Camels (Camelus dromedarius)


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Coniophora puteana RWD-64-598 SS-2

text: Coniophora puteana RWD-64-598 SS2

text: RWD-64-598 SS-2

characteristic: strain

text: Generic sample from Coniophora puteana RWD-64-598 SS2


text: IGB Berlin

text: live

text: Generic

text: Saccharina latissima

text: transcriptome of Saccharina latissima


name: Genome-wide capture of plasticity-induced nascent RNAs in neurons: nRNA-seq

text: University of Florida - Leonid Moroz

text: live

text: Generic

text: Aplysia californica


name: Single-Cell Semiconductor Sequencing: scRNA-Seq

text: University of Florida - Leonid Moroz

text: live

text: Generic

text: Aplysia californica


WDPMP tumor

text: National Cancer Centre Singapore

text: live

text: Generic

text: Tumor and blood samples were collected from a 41-year-old, Chinese female who was diagnosed with well-differentiated papillary mesothelioma of the peritoneum (WDPMP). The patient underwent cytoreductive surgery (CRS) and hyperthermic infusion of intraperitoneal chemotherapy (HIPEC). For sample DNA extraction, ~15-20mg of frozen tissue is measured out and the sample is pulverized into a fine powder using mortar and pestle; the powdered sample is then added to a 15ml falcon tube containing 2ml Master mix containing 4 microlitre of Rnase A, 100 microlitre of QIAGEN protease and 2 microlitre of Buffer G2 and mixed thoroughly. The mixture is incubated in 50 degrees celsius incubator for 24hrs then it is spun in maximum speed for 25 minutes before the supernatant is extracted. DNA is then extracted from the supernatant using Qiagen's Blood &amp; Cell Culture Mini kit according to manufacturer's instruction.

text: Homo sapiens

text: Well differentiated Papillary Mesothelioma of Peritoneum


WDPMP Normal

text: National Cancer Centre Singapore

text: live

text: Generic

text: Homo sapiens

text: Well Differentiated Papillary Mesothelioma of Peritoneum


WDPMP Cell line

text: National Cancer Centre Singapore

text: live

text: Generic

text: Tumor and blood samples were collected from a 41-year-old, Chinese female who was diagnosed with well-differentiated papillary mesothelioma of the peritoneum (WDPMP). The patient underwent cytoreductive surgery (CRS) and hyperthermic infusion of intraperitoneal chemotherapy (HIPEC). Fresh tumor section is first minced into a paste using surgical scissors into a sterile petri dish then the minced section is transferred to a 50ml falcon conical tube along with 10 ml of 0.1% collagenase (Sigma cat no. C5138) and incubated for one hour at 37 degrees celsius. 40ml of RPMI1640 is then added to the tube and spun for 5 minutes at 500g's after which the supernatant is removed and the process is repeated until the pellet has a white colour. The pellet is re-suspended with 14ml of RPMI1640 containing 10% Fetal Bovine Serum (FBS) and antibiotics and seeded onto a T-75 flask. The flask is incubated for 24 hrs in 37 degrees celsius in 5% CO2 environment before being checked under microscope for cell attachment to the flask surface and the cells are passaged every three days.

text: Homo sapiens

text: Well Differentiated Papillary Mesothelioma of the Peritoneum


PRJNA28331.Veillonella atypica CD1 NA 1

text: Broad Institute

text: live

text: Generic

text: Veillonella atypica CD1_NA_1

text: Veillonella atypica CD1 NA 1

characteristic: sample name

text: CD1 NA 1

text: Generic sample from Veillonella atypica CD1_NA_1


name: PRJNA28331.Staphylococcus sp. strain KPL1816

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Staphylococcus sp. KPL1816

text: Staphylococcus sp. strain KPL1816

text: Generic sample from Staphylococcus sp. KPL1816


name: PRJNA28331.Synergistes sp. 22-5-S 12 D6 FAA

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Synergistes sp. 22-5-S_12_D6_FAA

text: Synergistes sp. 22-5-S 12 D6 FAA

text: 22-5-S 12 D6 FAA

text: Generic sample from Synergistes sp. 22-5-S_12_D6_FAA


name: PRJNA28331.Phascolarctobacterium faecium UC1 BHI D

text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Phascolarctobacterium faecium UC1_BHI_D

text: Phascolarctobacterium faecium UC1 BHI D

text: UC1 BHI D

text: Generic sample from Phascolarctobacterium faecium UC1_BHI_D


name: PRJNA28331.Veillonella parvula AC2_8_11 AN NA 2

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Veillonella parvula AC2_8_11_AN_NA_2

text: Veillonella parvula AC2_8_11 AN NA 2

text: AC2_8_11 AN NA 2

text: Generic sample from Veillonella parvula AC2_8_11_AN_NA_2


name: PRJNA28331.Staphylococcus sp. strain KPL1815

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Staphylococcus sp. KPL1815

text: Staphylococcus sp. strain KPL1815

text: Generic sample from Staphylococcus sp. KPL1815


PRJNA67667.plasmodium falciparum

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: plasmodium falciparum

text: Generic sample from Plasmodium falciparum Tanzania (2000708)


text: Broad Institute

text: live

text: Generic

text: Peptococcus sp. 2_1_54CFAACT2

text: Peptococcus sp. 2_1_54CFAACT2

text: Generic sample from Peptococcus sp. 2_1_54CFAACT2


text: Broad Institute

text: live

text: Generic

text: Ministeria vibrans ATCC 50519

text: ms

text: ATCC 50519

text: Generic sample from Ministeria vibrans ATCC 50519


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HT1135

text: Generic sample from Mycobacterium tuberculosis HT1135


text: Broad Institute

text: live

text: Generic

text: Escherichia coli PBC20

text: Generic sample from Escherichia coli PBC20


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HT1159

text: Generic sample from Mycobacterium tuberculosis HT1159


text: Broad Institute

text: live

text: Generic

text: Escherichia coli MV2D4

text: Generic sample from Escherichia coli MV2D4


text: Broad Institute

text: live

text: Generic

text: Escherichia coli PBB5

text: Generic sample from Escherichia coli PBB5


text: Broad Institute

text: live

text: Generic

text: Escherichia coli PBD21

text: Generic sample from Escherichia coli PBD21


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HT1158

text: Generic sample from Mycobacterium tuberculosis HT1158


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HT1120

text: Generic sample from Mycobacterium tuberculosis HT1120


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HT1165

text: Generic sample from Mycobacterium tuberculosis HT1165