text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Dickeya dadantii Ech586

text: Dickeya parazeae Ech586

text: Generic sample from Dickeya dadantii Ech586


status: PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Ferroglobus placidus DSM 10642

characteristic: description

text: Ferroglobus placidus DSM 10642

characteristic: organism

text: DSM 10642

tag: attribute

characteristic: strain

text: Generic sample from Ferroglobus placidus DSM 10642

characteristic: title

text: type strain of Ferroglobus placidus

characteristic: type material


Cattle Rumen bacterial diversity

text: Medical Biofilm Research Institute

text: live

text: Generic

text: Previously we have shown DGGE based qualitative and relative changes in rumen bacterial diversity in the liquid phase associated with transitioning steers from a grass hay diet to grazing winter wheat (Min et al 2006). To extend this work to include more comprehensive evaluation of rumen bacterial populations, the objective of this study was to characterize 16S bacterial diversity in whole rumen content and liquid and fiber fractions derived from a population of 14 ruminally cannulated yearling steers from a common life-time series of environments using next-generation sequencing platforms.

text: bovine gut metagenome

text: Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets.


text: live

text: Generic

text: Thermoanaerobacter ethanolicus CCSD1

text: Thermoanaerobacter ethanolicus CCSD1

text: Generic sample from Thermoanaerobacter ethanolicus CCSD1


text: University of Edinburgh

text: live

text: Generic

text: Kenya: collected in Nairobi in 2005 by Jenny Carpenter 4 diploid outbred females (pooled genomic DNA) made by taking F1s from 4 crosses between 8 isofemale lines.

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


text: University of Edinburgh

text: live

text: Generic

text: Gabon: collected in N'Toumn and Franceville in 2002 by Bill Ballard and Sylvain Charlat 4 diploid outbred females (pooled genomic DNA) made by taking F1s from 4 crosses between 8 isofemale lines.

text: Drosophila melanogaster


text: University of Edinburgh

text: live

text: Generic

text: Japan: collected in Yamagata in 2006 by Prof. Masayoshi Watada 4 diploid outbred females (pooled genomic DNA) made by taking F1s from 4 crosses between 8 isofemale lines.

text: Drosophila melanogaster


text: University of Edinburgh

text: live

text: Generic

text: Florida: collected in Apshawa in 2005 by Jenny Carpenter 4 diploid outbred females (pooled genomic DNA) made by taking F1s from 4 crosses between 8 isofemale lines.

text: Drosophila melanogaster


text: University of Edinburgh

text: live

text: Generic

text: French Polynesia: collected in 2005 by Sylvain Charlat 4 diploid outbred females (pooled genomic DNA) made by taking F1s from 4 crosses between 8 isofemale lines.

text: Drosophila melanogaster


text: University of Edinburgh

text: live

text: Generic

text: Greece: collected in Athens in 2005 by Natasa Fytrou 4 diploid outbred females (pooled genomic DNA) made by taking F1s from 4 crosses between 8 isofemale lines.

text: Drosophila melanogaster


text: University of Edinburgh

text: live

text: Generic

text: Drosophila simulans

text: Generic sample from Drosophila simulans


text: University of Edinburgh

text: live

text: Generic

text: Kenya (collected in Nairobi in 2005 by Jenny Carpenter) 4 diploid outbred females (pooled genomic DNA) made by taking F1s from 4 crosses between 8 isofemale lines.

text: Drosophila simulans

text: Generic sample from Drosophila simulans


A. annua Artemis meristem ESTs

text: Centre for Novel Agricultural Products

text: live

text: Generic

text: A. annua Artemis Young leaf vegetative meristem cDNA 454 sequence

text: Artemisia annua

text: Generic sample from Artemisia annua


name: A. annua Artemis young leaf trichome ESTs

text: Centre for Novel Agricultural Products

text: live

text: Generic

text: A. annua Artemis: 454 sequencing of trichomes harvested from young leaves.

text: Artemisia annua

text: Generic sample from Artemisia annua


name: A. annua Artemis mature leaf trichome ESTs

text: Centre for Novel Agricultural Products

text: live

text: Generic

text: A. annua Artemis: 454 sequencing of trichomes isolated from mature leaves.

text: Artemisia annua

text: Generic sample from Artemisia annua


A. annua Artemis cotyledon ESTs

text: Centre for Novel Agricultural Products

text: live

text: Generic

text: A. annua Artemis: 454 sequencing of cotyledons.

text: Artemisia annua

text: Generic sample from Artemisia annua


name: A. annua Artemis flowerbud trichome ESTs

text: Centre for Novel Agricultural Products

text: live

text: Generic

text: A. annua Artemis: 454 sequencing of trichomes harvested from flowerbuds.

text: Artemisia annua

text: Generic sample from Artemisia annua


Population U trichomes

text: Centre for Novel Agricultural Products

text: live

text: Generic

text: Artemisia annua

text: Generic sample from Artemisia annua


Population U meristems

text: Centre for Novel Agricultural Products

text: live

text: Generic

text: Artemisia annua

text: Generic sample from Artemisia annua


Population M trichomes

text: Centre for Novel Agricultural Products

text: live

text: Generic

text: Artemisia annua

text: Generic sample from Artemisia annua


Population M meristem

text: Centre for Novel Agricultural Products

text: live

text: Generic

text: Artemisia annua

text: Generic sample from Artemisia annua


Awassi

text: AgResearch

text: live

text: Generic

characteristic: age

characteristic: animal id

text: Awassi

characteristic: breed

text: good health

characteristic: condition

text: Awassi from Syndney Uni, provided by Herman Radsma, sequenced by BCM...

text: Ovis aries

text: female

characteristic: sex

text: blood

characteristic: tissue

text: Generic sample from Ovis aries

characteristic: year of birth


OILCROPS-TS

characteristic: External Id

text: Oil Crops Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Brassica napus

text: Generic sample from Brassica napus


OILCROPS-AP

text: Oil Crops Research Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Brassica napus

text: Generic sample from Brassica napus


OILCROPS-TP

text: Oil Crops Research Institute

text: live

text: Generic

text: Brassica napus

characteristic: organism

text: Generic sample from Brassica napus

characteristic: title


OILCROPS-AS

text: Oil Crops Research Institute

text: live

text: Generic

text: Brassica napus

text: Generic sample from Brassica napus


text: Leaf blight, Stewart's bacterial wilt

characteristic: Diseases

characteristic: GOLD Stamp ID

text: Prodigal

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Nonsporulating

characteristic: Sporulation

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Keywords: GSC:MIGS:2.1

characteristic: description

text: Host

characteristic: environment

characteristic: investigation type

text: Nonmotile

characteristic: motility

text: Pantoea sp. At-9b

text: Pathogen

characteristic: phenotypes

text: Pantoea sp. At-9b

characteristic: project name

text: facultative

characteristic: strain

text: Mesophile

characteristic: temperature range

text: Pantoea sp. At-9b, complete genome.


characteristic: External Id

text: Center for Comparative Genomics and Bioinformatics

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: depth

text: subseafloor sediments from ODP Leg 201, Site 1229; 50 meters below seafloor

text: marine sediment metagenome

characteristic: organism

text: Generic sample from marine sediment metagenome


CCSW

text: live

text: Generic

text: pelleted fungal cells and fungal biomass

text: Aspergillus niger: cell (d 1-5), biomass (d 1-2)

characteristic: description

text: day 1,2,3,4,5 (cells) and 1-2 days (biomas)

text: Aspergillus niger ATCC 1015

text: ATCC 1015

text: Generic sample from Aspergillus niger ATCC 1015

characteristic: title


text: University of Florida

text: live

text: Generic

text: Tragopogon dubius

text: Generic sample from Tragopogon dubius


S. cerevisiae DBY746_1

text: Helicos BioSciences Corporation

text: live

text: Generic

text: Genotype: MATalpha his3-delta1 leu2-3 leu2-112 ura3-52 trp1-289

text: Saccharomyces cerevisiae

text: Generic sample from Saccharomyces cerevisiae


Glyso

text: Korean Bioinformation Center

text: live

text: Generic

text: Glycine soja

text: Generic sample from Glycine soja


Total cell small RNA library

text: CNRS

text: live

text: Generic

text: RNA from three pooled preparations of MonoMac-6 cells, resuspended in 250 uL PBS and isolated with Trizol LS. A library of 19-33 nucleotide RNA was prepared according to the methods of Pfeffer S, Lagos-Quintana M, Tuschl T. Curr Protoc Mol Biol. 2005 Nov;Chapter 26:Unit 26.4. Cloning of Small RNA Molecules. RNA isolation, library preparation and 454 technology sequencing was performed in parallel with the library for exosome-like vesicles. The adaptors used for library preparation were as follows: 5' (454 A primer - identifying tag - 5' adaptor; GCCTCCCTCGCGCCATCAG-GTCA-GAATTCCTCACTAAA-cloned RNA) and 3'(cloned RNA - 3'adaptor - 454 B primer; TTTAACCGCGAATTC-CTGAGCGGGCTGGCAAGGC).

text: Homo sapiens

text: Generic sample from Homo sapiens


small RNA library of exosomes

text: CNRS

text: live

text: Generic

text: RNA from three pooled preparations of exosome-like vesicles prepared by differential centrifugation from the supernatant of MonoMac-6 cells. Exosome-like vesicles were resuspended in 250 uL PBS and isolated with Trizol LS. A library of 19-33 nucleotide RNA was prepared according to the methods of Pfeffer S, Lagos-Quintana M, Tuschl T. Curr Protoc Mol Biol. 2005 Nov;Chapter 26:Unit 26.4. Cloning of Small RNA Molecules. RNA isolation, library preparation and 454 technology sequencing was performed in parallel with the library for total cell RNA. The adaptors used for library preparation were as follows: 5' (454 A primer - identifying tag - 5' adaptor; GCCTCCCTCGCGCCATCAG-GATC-GAATTCCTCACTAAA-cloned RNA) and 3'(cloned RNA - 3'adaptor - 454 B primer; TTTAACCGCGAATTC-CTGAGCGGGCTGGCAAGGC).

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Roche NimbleGen

text: live

text: Generic

text: Zea mays

text: Generic sample from Zea mays


Wild type bisultfite library

text: Gene Expression Omnibus

text: live

text: Generic

text: source: leafs; description: reads of bisulfite converted DNA

text: wild type

characteristic: genotype

text: Arabidopsis thaliana

text: leafs

characteristic: tissue

text: Generic sample from Arabidopsis thaliana


atxr5/atxr6 double mutant

text: Gene Expression Omnibus

text: live

text: Generic

text: atxr5/atxr6 double mutant

text: Arabidopsis thaliana

text: leafs


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Whole aerial tissue, bolting; description: Biological replicate of rep2, technical replicate of rep3

characteristic: ecotype

text: Arabidopsis thaliana

text: Whole aerial tissue, bolting


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Whole aerial tissue, bolting; description: Biological replicate of rep1

text: Arabidopsis thaliana

text: Whole aerial tissue, bolting


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Whole aerial tissue, bolting; description: Technical replicate of rep1

text: Arabidopsis thaliana

text: Whole aerial tissue, bolting


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Whole aerial tissue, bolting; description: Wild type reference for dcl1-7 and dcl2-1 dcl3-1 dcl4-2 plants

text: Arabidopsis thaliana

text: wild type

characteristic: text

text: Whole aerial tissue, bolting


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Whole aerial tissue, bolting; description: dcl1-7 mutant plant

text: Arabidopsis thaliana

text: homozygous dcl1-7

text: Whole aerial tissue, bolting


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: source: Whole aerial tissue, bolting; description: dcl2-1 dcl3-1 dcl4-2 mutant plant

text: Arabidopsis thaliana

text: homozygous dcl2-1 dcl3-1 dcl4-2

text: Whole aerial tissue, bolting


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: H3K4me3 Diagenode

characteristic: antibody

text: ES-cells

characteristic: cell type

text: source: Embryonic Stem cells; description: Chromatin IP against H3K4me3

text: Mus musculus

characteristic: strain

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: H3K27me3 from T. Jenuwein

text: ES-cells

text: source: Embryonic Stem cells; description: Chromatin IP against H3K27me3

text: Mus musculus

text: Generic sample from Mus musculus


name: Drosophila OSS cell small RNA libraries, rep1

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Ovary Somatic Sheet (OSS)

characteristic: cell line

text: source: Drosophila OSS cells; description: Small RNA data (technical replicate). These data were produced for the modENCODE project *http://www.modencode.org/) and are unpublished at this time. In accordance with NHGRI guidelines for community resource projects (http://www.genome.gov/), there is no restriction on the use or analysis of these data. However, the end-user is asked to respect a nine-month moratorium (from the public submission date) before submitting manuscripts describing analysis of these data. If the data producer has published any description of these data before the nine-month period, the moratorium ceases to apply and this accession page will be updated to note the appropriate citation.

text: Drosophila melanogaster

characteristic: organism

text: Generic sample from Drosophila melanogaster


name: Drosophila OSS cell small RNA libraries, rep2

text: Gene Expression Omnibus

text: live

text: Generic

text: Ovary Somatic Sheet (OSS)

characteristic: description

text: Drosophila melanogaster

characteristic: title


name: Drosophila OSS cell small RNA libraries, rep3

text: Gene Expression Omnibus

text: live

text: Generic

text: Ovary Somatic Sheet (OSS)

text: Drosophila melanogaster


name: Drosophila OSS cell small RNA libraries, rep4

text: Gene Expression Omnibus

text: live

text: Generic

text: Ovary Somatic Sheet (OSS)

text: Drosophila melanogaster


N2_emb_rep 1

text: Gene Expression Omnibus

text: live

text: Generic

text: source: N2 embryo RNA; description:

text: Caenorhabditis elegans

text: embyo

characteristic: stage

text: Generic sample from Caenorhabditis elegans


N2_emb_rep 2

characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: source: N2 embryo RNA; description:

text: Caenorhabditis elegans

text: embyo


N2_emb_rep 3

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: source: N2 embryo RNA; description:

text: Caenorhabditis elegans

text: embyo


N2_starved L1_rep 1

text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: source: N2 starved L1 RNA; description:

text: Caenorhabditis elegans

text: Starved L1


N2_starved L1_rep 2

text: Gene Expression Omnibus

text: live

text: Generic

text: source: N2 starved L1 RNA; description:

text: Caenorhabditis elegans

text: Starved L2


N2_starved L1_rep 3

text: Gene Expression Omnibus

text: live

text: Generic

text: source: N2 starved L1 RNA; description:

text: Caenorhabditis elegans

text: Starved L3


Oligoribonucleotide

text: Helicos BioSciences Corporation

text: live

text: Generic

text: Oligo1:AGAGUCCCAUCCUCACCAUCAUCACACUGGAAGACUGCAG Oligo2:CUGGUGCAGCACUCUCGACGGCACCUAUCUGCCAUCGUAG Oligo3:CGAUCGUCACUAUCUGCAUCAGUAGCUCUAGCAUACUGAG Oligo4:UCUUUCGUCAGGGCAGAGGAUGGAUGCAAGGAUAAGUGGA

text: Saccharomyces cerevisiae


text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

characteristic: chip antibody

text: source: Sperm Pooled Donors; description: ChIP-Seq for H2Az

text: Homo sapiens

text: Generic sample from Homo sapiens


H3K4Me3 Lane 1

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

characteristic: cell type

text: source: Sperm Pooled Donors; description: ChIP-Seq for H3K4Me3

text: Homo sapiens

text: Generic sample from Homo sapiens


H3K4Me3 Lane 2

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


H3K4Me3 Lane 3

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


H3K27Me3 Lane 1

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: source: Sperm Pooled Donors; description: ChIP-Seq for H3K27Me3

text: Homo sapiens

text: Generic sample from Homo sapiens


H3K27Me3 Lane 2

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 1

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: source: Sperm Donor D1; description: Histone bound DNA enrichment via Mnase digestions and nucleosome purification

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 2

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 3

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 4

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 5

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 6

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 7

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 8

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: source: Sperm Donor D2; description: Histone bound DNA enrichment via Mnase digestions and nucleosome purification

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 9

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 10

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: source: Sperm Donor D3; description: Histone bound DNA enrichment via Mnase digestions and nucleosome purification

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 11

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 12

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: source: Sperm Donor D4; description: Histone bound DNA enrichment via Mnase digestions and nucleosome purification

text: Homo sapiens

text: Generic sample from Homo sapiens


Histone-Mnase Lane 13

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Input Lane 1

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: source: Sperm Donor D1; description: Input control

text: Homo sapiens

text: Generic sample from Homo sapiens


Input Lane 2

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Input Lane 3

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Input Lane 4

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: source: Sperm Pooled Donors; description: Input control

text: Homo sapiens

text: Generic sample from Homo sapiens


Input Lane 5

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Input Lane 6

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Input Lane 7

text: Gene Expression Omnibus

text: live

text: Generic

text: sperm

text: Homo sapiens

text: Generic sample from Homo sapiens


Elegans Transcriptome

text: University of Toronto

text: live

text: Generic

text: Illumina sequence data at 37 nucleotide resolution

text: Caenorhabditis elegans


Herbicide treated Maize

text: Spanish National Center for Biotechnology - CSIC

text: live

text: Generic

text: uncultured bacterium

text: Herbicide effect on rhizobacterial communities


name: Illumina sequencing of small RNAs from FACS-sorted planarian neoblasts

text: Gene Expression Omnibus

text: live

text: Generic

text: source: planarium; description:

text: Schmidtea mediterranea

text: cell type: FACS-sorted neoblast stem cells

characteristic: tag

text: Generic sample from Schmidtea mediterranea


name: Illumina sequencing of small RNAs from untreated planarians

text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: source: planarium; description:

text: Schmidtea mediterranea

text: cell type: untreated whole-body planarians


name: Illumina sequencing of small RNAs from irradiated planarians

text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

text: source: planarium; description:

text: Schmidtea mediterranea

text: cell type: irradiated whole-body planarians


name: D.rerio_adult_pooled control fish 1,2,3 and 4 (s2)

text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

text: adult

characteristic: age

text: source: pooled whole adult fish (healthy control); description: s_2

text: Danio rerio

text: whole organism

characteristic: tissue

text: Generic sample from Danio rerio


name: D.rerio_adult_pooled infected fish_1,2,3 and 4 (s3)

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: adult

text: source: pooled whole adult fish (M.marinum-infected); description: s_3

text: Danio rerio

text: whole organism

text: Generic sample from Danio rerio


name: D.rerio_adult_pooled control fish 1,2,3 and 4 (s6)

text: Gene Expression Omnibus

text: live

text: Generic

text: adult

text: source: pooled whole adult fish (healthy control); description: s_6

characteristic: description

text: Danio rerio

characteristic: organism

text: whole organism

text: Generic sample from Danio rerio


name: D.rerio_adult_pooled infected fish_1,2,3 and 4 (s7)

text: Gene Expression Omnibus

text: live

text: Generic

text: adult

text: source: pooled whole adult fish (M.marinum-infected); description: s_7

text: Danio rerio

text: whole organism

text: Generic sample from Danio rerio

characteristic: title


name: small RNAs from Medicago truncatula, Jemalong A17, Mature nodules

characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Jemalong A17

characteristic: cultivar

text: source: Mature nodules; description: nodule smallRNAs 13-45nt

text: Mature nodules (1 month after inoculation with S. meliloti 2011)

characteristic: development stage

text: Medicago truncatula

text: One week old seedlings, grown in low nitrogen conditions, were inoculated with S. meliloti 2011 strain and mature nodules were harvested four weeks after inoculation

characteristic: specific growth conditions

text: Nodule

text: Generic sample from Medicago truncatula


name: small RNAs from Medicago truncatula, Jemalong A17, Root tips

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Jemalong A17

text: source: Root apexes; description: root smallRNAs 13-45nt

text: Root tips (1-2cm)

text: Medicago truncatula

text: Root tips (1-2 cm) were obtained from plants 10-12 days post-germination grown in sand:perlite pots disposed on a metal grid, with root tips growing in a rich SN/2 nutritive solution.

text: Root

text: Generic sample from Medicago truncatula


name: small RNAs from Medicago truncatula, Jemalong A17, Root tips + NaCl 100 mM 1 hour

text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: Jemalong A17

text: source: Root apexes + NaCl; description: root+NaCl smallRNAs 13-45nt

text: Root tips (1-2cm)

text: Medicago truncatula

text: Root tips (1-2 cm) were obtained from plants 10-12 days post-germination grown in sand:perlite pots disposed on a metal grid, with root tips growing in a rich SN/2 rich nutritive solution. Plants were transferred for 1 h in SN/2 + NaCl 100 mM.

text: Root

text: Generic sample from Medicago truncatula


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

text: Human primary dermal fibroblasts

characteristic: cell line

characteristic: cell type

text: source: CHP-SKN1 cells; description: Targeted bisulfite sequencing

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

text: Human breast adenocarcinoma cell line

text: source: MDA-MB-231 cells; description: Targeted bisulfite sequencing

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

text: anti H3K4me2

characteristic: antibody

text: Human breast adenocarcinoma cell line

text: source: MDA-MB-231 cells; description: Chromatin IP against H3K4me2

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: anti H3K36me3

text: Human breast adenocarcinoma cell line

text: source: MDA-MB-231 cells; description: Chromatin IP against H3K36me3

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: University of Alberta Mycological Herbarium 11150

text: Symbiont of Mountain Pine Beetle, Dendroctonus ponderosae, and pathogen of Lodgepole pine, Pinus contorta

characteristic: description

text: Grosmannia clavigera kw1407

characteristic: organism

characteristic: strain

text: mountain pine beetle; Dendroctonus ponderosae

characteristic: symbiont

text: Grosmannia clavigera kw1407


characteristic: External Id

text: Washington University Center for Genome Sciences

text: live

text: Generic

text: Clostridium innocuum strain SB23 was isolated from gnotobiotic mice colonized with an adult human gut microbiota. The strain was isolated and sequenced as part of a metagenomic study of humanized mice.

text: [Clostridium] innocuum

text: Generic sample from Clostridium innocuum

characteristic: title


Humanized mouse gut microbiome

characteristic: INSDC center name

text: live

text: Generic

text: Total community DNA/RNA isolated from the gut of a human donor and gnotobiotic mouse recipients

text: human gut metagenome

text: Generic sample from human gut metagenome


text: University of Exeter

characteristic: INSDC first public

text: live

text: Generic

characteristic: culture-collection

text: Pseudomonas amygdali pv. aesculi str. NCPPB 3681

text: aesculi

characteristic: pathovar

text: NCPPB 3681

text: Generic sample from Pseudomonas syringae pv. aesculi str. NCPPB 3681


text: University of Exeter

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Pseudomonas syringae pv. syringae FF5

text: syringae

text: Generic sample from Pseudomonas syringae pv. syringae FF5


text: University of Exeter

text: live

characteristic: INSDC status

text: Generic

text: Pseudomonas amygdali pv. aesculi

text: aesculi

text: Generic sample from Pseudomonas syringae pv. aesculi


text: University of Exeter

text: live

text: Generic

characteristic: NCBI submission model

text: Xanthomonas vasicola pv. vasculorum NCPPB 702

text: vasculorum

text: NCPPB 702

text: Generic sample from Xanthomonas vasicola pv. vasculorum


text: University of Exeter

text: live

text: Generic

text: Pseudomonas amygdali pv. tabaci str. ATCC 11528

text: tabaci

text: ATCC 11528

text: Generic sample from Pseudomonas syringae pv. tabaci ATCC 11528


T. pratensis Illumina run

text: University of Florida

text: live

text: Generic

text: Illumina run on transcriptome of Tragopogon pratensis from Oakesdale, WA (Soltis and Soltis collection number 2671-1 (ID no. 3912))

text: Tragopogon pratensis

text: Generic sample from Tragopogon pratensis


T. dubius Illumina

text: University of Florida

text: live

text: Generic

text: Tragopogon dubius

text: Generic sample from Tragopogon dubius


text: Broad Institute

text: live

text: Generic

text: human gut metagenome

characteristic: sample name

text: Generic sample from unclassified Bacteria (miscellaneous)


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: male

characteristic: host sex

text: human gut metagenome

text: Generic sample from unclassified sequences


T. miscellus Illumina

text: University of Florida

text: live

text: Generic

characteristic: SRA accession

text: Tragopogon miscellus from Oakesdale, WA (Soltis and Soltis collection number 2671-1 (ID no. 3912)) non-normalized polyA enriched cDNA from leaf RNA

characteristic: description

text: Tragopogon miscellus

text: Generic sample from Tragopogon miscellus


Sigma

text: MIT

text: live

text: Generic

text: Saccharomyces cerevisiae Sigma1278b

characteristic: organism

characteristic: strain

text: Generic sample from Saccharomyces cerevisiae


adult liver

characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Xenopus tropicalis adult liver; description: small RNAs were sequenced from Xenopus tropicalis adult liver

text: adult

characteristic: developmental stage

text: wild type

characteristic: genotype

text: Xenopus tropicalis

text: liver

characteristic: tissue

text: Generic sample from Xenopus (Silurana) tropicalis


adult skin

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: source: Xenopus tropicalis adult skin; description: Small RNAs were sequenced from Xenopus tropicalis adult skin

text: adult

text: wild type

text: Xenopus tropicalis

text: skin

characteristic: title


oocytes stage I, II

text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: source: Xenopus tropicalis oocytes stage I, II; description: Small RNAs were sequenced from Xenopus tropicalis oocytes stage I, II

text: oocytes stage I, II

text: wild type

text: Xenopus tropicalis

text: oocytes


oocytes stage III, IV

text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: source: Xenopus tropicalis oocytes stage III, IV; description: Small RNAs were sequenced from Xenopus tropicalis oocytes stage III, IV

text: oocytes stage III, IV

text: wild type

text: Xenopus tropicalis

text: oocytes


oocytes stage V, VI

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

text: source: Xenopus tropicalis oocytes stage V, VI; description: Small RNAs were sequenced from Xenopus tropicalis oocytes stage V, VI

text: oocytes stage V, VI

text: wild type

text: Xenopus tropicalis

text: oocytes


Leaf-Diploid

text: Gene Expression Omnibus

text: live

text: Generic

text: about 120 days

characteristic: age

text: source: The middle part of the flag leaves

text: flowering stage

text: Oryza sativa

text: flag leafs

text: Generic sample from Oryza sativa


Leaf-Autotriploid

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: about 120 days

text: flowering stage

text: Oryza sativa

text: SARII-658; Tissue: flag leafs; Age: about 120 days; Developmental stage: flowering stage

text: flag leafs

text: Generic sample from Oryza sativa


text: Gene Expression Omnibus

text: live

text: Generic

text: MDBK bovine kidney cell line

characteristic: cell line

text: source: MDBK Bovine kidney cell line - infection_MOI 0.75; description: BHV075

characteristic: description

text: Bos taurus

text: Generic sample from Bos taurus


text: Gene Expression Omnibus

text: live

text: Generic

text: MDBK bovine kidney cell line

text: source: MDBK Bovine kidney cell line - infection_MOI 7.5; description: BHV75

text: Bos taurus

characteristic: organism

text: Generic sample from Bos taurus


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: MDBK bovine kidney cell line

text: source: MDBK Bovine kidney cell line - control; description: Control

text: Bos taurus

text: Generic sample from Bos taurus


text: Massachusetts Institute of Technology

text: live

text: Generic

text: planktonic microbial community, Central North Pacific Subtropical Gyre, Station ALOHA, 25 m depth

text: marine metagenome

text: Generic sample from marine metagenome


text: Massachusetts Institute of Technology

text: live

text: Generic

text: planktonic microbial community, Central North Pacific Subtropical Gyre, Station ALOHA, 75 m depth

text: marine metagenome

text: Generic sample from marine metagenome


text: Massachusetts Institute of Technology

text: live

text: Generic

text: planktonic microbial community, Central North Pacific Subtropical Gyre, Station ALOHA, 110 m depth

text: marine metagenome

text: Generic sample from marine metagenome


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: RNA Pol2 ChIP in A549 Cells after 1h, 100nM Dexamethasone Treatment (Replicate 1)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: Illumina sequencing of RNA Pol2 ChIP in A549 Cells after 1h, 0.02% v/v Ethanol Treatment (Replicate 1)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: Glucocorticoid Receptor ChIP in A549 Cells after 1h, 100nM Dexamethasone Treatment (Replicate 1)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: Glucocorticoid Receptor ChIP in A549 Cells after 1h, 0.02% Ethanol Treatment (Replicate 1)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: Glucocorticoid Receptor ChIP in A549 Cells after 1h, 100nM Dexamethasone Treatment (Replicate 2)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: Glucocorticoid Receptor ChIP in A549 Cells after 1h, 0.02% Ethanol Treatment (Replicate 2)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: RNA Pol2 ChIP in A549 Cells after 1h, 100nM Dexamethasone Treatment (Replicate 2)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: A549 total reverse-crosslinked chromatin after 1h, 0.02% Ethanol Treatment

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: RNA Pol2 ChIP in A549 Cells after 1h, 0.02% Ethanol Treatment (Replicate 2)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: A549 total reverse-crosslinked chromatin after 1h, 100nM Dexamethasone Treatment

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: RNA Pol2 (Ser2 Phos.) ChIP in A549 Cells after 1h, 100nM Dexamethasone Treatment

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: RNA Pol2 (Ser2 Phos.) ChIP in A549 Cells after 1h, 0.02% v/v Ethanol Treatment

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: A549 mRNA after 1h, 100nM Dexamethasone Treatment (Replicate 1)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: A549 mRNA after 1h, 0.02% Ethanol Treatment (Replicate 1)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: A549 mRNA after 1h, 100nM Dexamethasone Treatment (Replicate 2)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hudson Alpha Institute of Biotechnology

text: live

text: Generic

text: A549 mRNA after 1h, 0.02% Ethanol Treatment (Replicate 2)

text: Homo sapiens

characteristic: publication

text: Generic sample from Homo sapiens


text: University of California, Berkeley

text: live

text: Generic

text: Scer SIR4-myc / Sbay SIR4, input-Seq (non-immunoprecipitated, crosslinked, sheared, sample). This is an inter-species hybrid of S. cerevisiae/S. bayanus; the indicated TaxonId of 4932 is not correct, it is 4932/4931 cross.

text: Saccharomyces cerevisiae

text: Generic sample from Saccharomyces cerevisiae


name: Nematode metagenetic/metagenomic control sample

text: University of New Hampshire

text: live

text: Generic

text: Forty-one nematode species (Table 2) representing most clades (Holterman et al. 2006) were hand-picked and placed in ZR BashingBead Lysis Tubes (Zymo Research Corp, Santa Ana, CA) for either single nematode amplification (single nematode per tube - sPCR) or multiple nematode amplification (all nematode species placed together - mPCR). Tubes were placed into the Mini-BeadBeater (BioSpec Products, Inc. Bartlesville, OK) and processed at max speed for 2 minutes. Genomic DNA was extracted using ZR Soil Microbe DNA kit according to the manufacture’s protocol. Eluted DNA was stored at -20C until used as PCR template. The 18S and 28S barcoding regions were amplified using fusion primers that included a proprietary primer sequence (A or B) of the 454 GS and priming sequences of 18S and 28S. PCR amplifications of 18S were performed using 1 l genomic DNA template in 25 l reactions containing 2.5 l of 10X buffer with MgCL2, 0.5 l of each of dNTP, 0.5 l of primers A-NF1 (5’-GCCTCCCTCGCGCCATCAGGGTGGTGCATGGCCGTTCTTAGTT-3’) and B-18Sr2b (5’-GCCTTGCCAGCCCGCTCAGTACAAAGGGCAGGGACGTAAT-3’), and 0.165 l of DyNAzyme Hot Start DNA polymerase (BioLabs New England Inc. Ipswitch, MA). The thermal cycling involved denaturation at 94C for 10 min, followed by 35 cycles of denaturation at 94C for 1 min, annealing at 58C for 30 s, and extension at 72C for 1 min. PCR amplifications of 28S was performed using 1 l of primers A-D3A (5’-GCCTTGCCAGCCCGCTCAGGACCCGTCTTGAAACACGGA -3’) and B-D3B (5’-GCCTTGCCAGCCCGCTCAGTCGGAAGGAACCAGCTACTA-3’) and AmpliTaq DNA polymerase (Applied Biosystems, Foster City, CA) using denaturation at 95C for 5 min, followed by 35 cycles of denaturation at 95C for 1 min, annealing at 55C for 1 min, and extension at 72C for 2 min. A final extension was identical for both PCR programs and was performed at 72C for 10 min. Negative controls were included for each amplification. All PCR products along with 1Kbp DNA ladder (Promega, Madison, WI) were electrophoresed on 1% agarose gel (Fisher Biotech) and stained with 0.003% ethidium bromide. No PCR products were observed in the negative controls. Positive bands of the correct size were assumed to be indicative of the presence of the nematode diagnostic amplicons, although the presence of fungal and other contaminants could not be excluded. PCR products were purified using Montage PCR Centrifugal Filter Devices (Millipore Corp., Bedford, MA) and visualized again on the agarose gel. All 18S PCR reactions yielded positive bands, however, eight 28S bands were missing (Table 1). Five l of PCR products from all single nematode PCR reactions were pulled together to create two metagenomic samples: 18S sPCR and 28S sPCR. Two additional metagenomic samples consisted of DNA amplified via multiple nematode PCR reactions and were labeled: 18S mPCR and 28S mPCR. Approximately 15 l of each sample was shipped on ice to the Interdisciplinary Center for Biotechnology Research (ICBR), 454 Sequencing for DNA quantification, calibration, and sequencing. All metagenomic samples were run separately on a 16th-chambered plate. All PCR products were A-Amplicon sequenced using 454 proprietary primers on GS FLX (454 Life Sciences, Roche Applied Science). Generated sequences were first screened against our database. In case of no matches, data were compared to published data in GenBank. A sequence data base of the 41 nematode species was constructed by amplifying each nematode species individually under conditions as described above and sequencing at the DNA Sequencing Core Laboratory of the University of Florida ICBR using dideoxy termination procedure on an automated DNA sequencer Model 377 (Applied Biosystems).

text: Caenorhabditis elegans

text: Generic sample from Caenorhabditis elegans


text: Massachusetts Institute of Technology

text: live

text: Generic

text: planktonic microbial community, 500 m depth, Sargasso Sea, BATS Station.

text: marine metagenome

text: Generic sample from marine metagenome


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Mesorhizobium opportunistum WSM2075

text: Mesorhizobium opportunistum WSM2075

characteristic: strain

text: Generic sample from Mesorhizobium opportunistum WSM2075

text: type strain of Mesorhizobium opportunistum

characteristic: type material


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: Cellular Dynamics

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: H1 stem cells from Cellular Dynamics

characteristic: differentiation stage

characteristic: line

text: undifferentiated

characteristic: lineage

text: TESR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: Generic sample from Homo sapiens


text: University of California, Berkeley

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Sbay SIR4-myc / Scer SIR4, input-Seq (non-immunoprecipitated, crosslinked, sheared, sample). This is an inter-species hybrid of S. cerevisiae/S. bayanus; the indicated TaxonId of 4932 is not correct, it is 4932/4931 cross.

text: Saccharomyces cerevisiae

characteristic: title


characteristic: External Id

text: University of California, Berkeley

characteristic: INSDC center name

text: live

text: Generic

text: Sbay SIR4-myc / Sbay SIR4, input-Seq (non-immunoprecipitated, crosslinked, sheared, sample). This is an inter-species hybrid of S. cerevisiae/S. bayanus; the indicated TaxonId of 4932 is not correct, it is 4932/4931 cross.

characteristic: description

text: Saccharomyces cerevisiae

characteristic: organism


text: University of California, Berkeley

text: live

text: Generic

text: Scer SIR4-myc / Scer SIR4, input-Seq (non-immunoprecipitated, crosslinked, sheared, sample). This is an inter-species hybrid of S. cerevisiae/S. bayanus; the indicated TaxonId of 4932 is not correct, it is 4932/4931 cross.

text: Saccharomyces cerevisiae


text: University of California, Berkeley

text: live

text: Generic

text: S. bayanus genomic DNA re-sequencing.

text: Saccharomyces bayanus

text: Generic sample from Saccharomyces bayanus


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: batch

text: Cellular Dynamics

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: H1 stem cells from Cellular Dynamics

characteristic: differentiation stage

characteristic: line

text: undifferentiated

text: TESR

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


Atn

text: University of Geneva

characteristic: INSDC first public

text: live

text: Generic

text: This brain EST library of Ancitrus temminckii is used as a control for assessing the efficiency of the Interspecific Selective Hybridization (ISH) method.

text: Ancistrus

text: Generic sample from Ancistrus


Atp

text: University of Geneva

characteristic: INSDC last update

text: live

text: Generic

text: This brain cDNA library enriched in fast evolving genes was obtained by using the Interspecific Selective Hybridization method.

text: Ancistrus

text: Generic sample from Ancistrus


Striped Bass

text: North Carolina State University - Genomic Sciences Lab

characteristic: INSDC secondary accession

text: live

text: Generic

text: Morone saxatilis

text: Generic sample from Morone saxatilis


text: Massachusetts Institute of Technology

text: live

characteristic: INSDC status

text: Generic

text: marine metagenome

text: Generic sample from marine metagenome


Windshield Splatter Trip1

text: The Pennsylvania State University

text: live

text: Generic

characteristic: NCBI submission model

text: The main aim of our study was to contrast eukaryotic species differences between two distinct geographical location in northeastern United States. DNA, isolated from the material stuck to the tapped front bumper of a car driven in these locations, was sequenced using 454 (Roche) FLX pyrosequencing technology.

text: terrestrial metagenome

text: Generic sample from metagenome sequence


Cleome spinosa leaf cDNA

text: Michigan State University

text: live

text: Generic

characteristic: NCBI submission package

text: Total RNA was isolated from leaves of 28 day old plants in the vegetative state. mRNA was isolated by two rounds of oligo(dT) purification, reverse transcribed into cDNA and prepared for 454 sequencing.

text: Tarenaya spinosa

text: Cleome spinosa leaf cDNA


Cleome gynandra leaf cDNA

text: Michigan State University

text: live

text: Generic

characteristic: SRA accession

text: Gynandropsis gynandra

text: Cleome gynandra leaf cDNA


text: BC Cancer Agency Michael Smith Genome Sciences Centre

text: live

text: Generic

text: DNA for PET library construction. Same strain has been sequenced using fosmid and 454 reads.

text: Grosmannia clavigera kw1407

text: Generic sample from Grosmannia clavigera kw1407

characteristic: title


characteristic: External Id

text: Iowa State University

text: live

text: Generic

text: Mu flanking sequences from different Mu lines were amplified by a genome walking method, DLA (Liu et al., Genetics, Submitted) and pooled for the 454 pyrosequencing.

text: Zea mays

text: Generic sample from Zea mays


text: NICHD

characteristic: INSDC center name

text: live

text: Generic

text: Schizosaccharomyces pombe

text: Generic sample from Schizosaccharomyces pombe


double-haploid rainbow trout

text: West Virginia University,

text: live

text: Generic

text: Tissues were collected from a single immature (~ 1-year-old) male double-haploid fish and frozen in liquid nitrogen and stored at -80C until total RNA isolation. Total RNA was isolated using TRIzol™ (Invitrogen, Carlsbad, CA) from fourteen tissues; white muscle, red muscle, testis, spleen, kidney, head kidney, pituitary, stomach, brain, heart, intestine, gill, skin, liver. Equal masses of total RNAs from various tissues were pooled and used to construct the 454 library.

characteristic: description

text: Oncorhynchus mykiss

text: Generic sample from Oncorhynchus mykiss


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: leaf

text: Avena barbata leaf, grown under ambient rainfall

text: booting stage

text: Avena barbata

characteristic: organism

text: Generic sample from Avena barbata


text: live

text: Generic

text: leaf

text: Avena barbata leaf, grown under high rainfall

text: booting stage

text: Avena barbata

text: Generic sample from Avena barbata


Stage III

text: Michigan State University

text: live

text: Generic

text: Developing castor bean (Ricinus communis) seeds were harvested at the development stages from stage III to stage VIII which are defined anatomically according to Bewley et al. (Can. J. Bot. 1982). Seeds were cut longitudinally in the middle to separate the endosperm and embryo which were immediately frozen in liquid nitrogen. Total RNA was extracted using TRIzol Reagent (Invitrogen). mRNA was purified using illustra mRNA purification kit (GE Healthcare).

text: Ricinus communis

text: Generic sample from Ricinus communis


Stage IV

text: Michigan State University

text: live

text: Generic

text: Ricinus communis

text: Generic sample from Ricinus communis


Stage V

text: Michigan State University

text: live

text: Generic

text: Developing castor bean (Ricinus communis) seeds were harvested at the development stages from stage III to stage VIII which are defined anatomically according to Bewley et al. (Can. J. Bot. 1982). Seeds were cut longitudinally in the middle to separate the endosperm and embryo which were immediately frozen in liquid nitrogen. Total RNA was extracted using TRIzol Reagent (Invitrogen). mRNA was purified using Cillustra mRNA purification kit (GE Healthcare).

text: Ricinus communis

text: Generic sample from Ricinus communis


Stage VI

text: Michigan State University

text: live

text: Generic

text: Ricinus communis

text: Generic sample from Ricinus communis


Stage VII-VIII

text: Michigan State University

text: live

text: Generic

text: Ricinus communis

text: Generic sample from Ricinus communis


Embryo Stage III-V

text: Michigan State University

text: live

text: Generic

text: Ricinus communis

text: Generic sample from Ricinus communis


text: live

text: dark condition

text: Generic

text: callus

characteristic: body site

text: Williams 82

characteristic: cultivar

text: Glycine max callus grown in dark condition

text: Glycine max

text: Glycine max cv. Williams 82 callus from plants grown in dark condition


control

text: USDA

text: live

text: Generic

text: Rumen metagenome from control steer.

text: bovine gut metagenome

text: Generic sample from bovine gut metagenome


propionate

text: USDA

text: live

text: Generic

text: Rumen metagenome from a propionate-treated steer.

text: bovine gut metagenome


AthalGUS

text: National Veterinary Institute

text: live

text: Generic

text: Arabidopsis thaliana line transformed with a pBI12135S:GUS Ti plasmid

text: Arabidopsis thaliana

text: Generic sample from Arabidopsis thaliana


Mycobacterium bovis str. Ravenel

text: GNF

text: live

text: Generic

text: M. bovis Ravenel was grown in Middlebrook 7H9 medium supplemented with 10% OADC enrichment, 0.5% Glycerol and 0.05% Tween-80

text: Mycobacterium tuberculosis variant bovis str. Ravenel

text: Ravenel

characteristic: strain

text: Generic sample from Mycobacterium bovis str. Ravenel


Windshield Splatter Trip2

text: The Pennsylvania State University

text: live

text: Generic

text: The main aim of our study was to contrast eukaryotic species differences between two distinct geographical location in northeastern United States. DNA, isolated from the material stuck to the tapped front bumper of a car driven in these locations, was sequenced using 454 (Roche) FLX pyrosequencing technology.

text: terrestrial metagenome

text: Generic sample from metagenome sequence


text: live

text: Generic

text: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111

text: Sanguibacter keddieii DSM 10542

text: DSM 43111

text: Generic sample from Sanguibacter keddieii DSM 10542


N2 Progenitor

text: Oregon St Univ - Center for Genome Research & Biocomputing

text: live

text: Generic

text: C.elegans N2 Progenitor. All MA lines in this study were derived from this strain.

text: Caenorhabditis elegans

text: Generic sample from Caenorhabditis elegans


text: live

text: Generic

text: Baer MA523 mutation-accumulation line derived from N2.

text: Caenorhabditis elegans


text: live

text: Generic

text: Baer MA526 mutation-accumulation line derived from N2.

text: Caenorhabditis elegans


text: live

text: Generic

text: Baer MA529 mutation-accumulation line derived from N2.

text: Caenorhabditis elegans


text: live

text: Generic

text: Baer MA538 mutation-accumulation line derived from N2.

text: Caenorhabditis elegans


text: live

text: Generic

text: Baer MA545 mutation-accumulation line derived from N2.

text: Caenorhabditis elegans


text: live

text: Generic

text: Baer MA553 mutation-accumulation line derived from N2.

text: Caenorhabditis elegans


text: live

text: Generic

text: Baer MA574 mutation-accumulation line derived from N2.

text: Caenorhabditis elegans


text: live

text: Generic

text: Lynch MA41 mutation-accumulation line derived from N2.

text: Caenorhabditis elegans


text: live

text: Generic

text: Lynch MA83 mutation-accumulation line derived from N2.

text: Caenorhabditis elegans


text: live

text: Generic

text: Lynch MA99 mutation-accumulation line derived from N2.

text: Caenorhabditis elegans


text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Normalized pooling of 2,664 RT-PCR products

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Normalized pooling of 1,440 RT-PCR products

text: Drosophila melanogaster


text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Normalized pooling of 1,920 RT-PCR products

text: Drosophila melanogaster


text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Normalized pooling of 2,446 RT-PCR products

text: Drosophila melanogaster


text: Max Planck Institute for Molecular Genetics

text: live

text: Generic

text: Reference genome of CC102 E. coli strain

text: Escherichia coli

text: Generic sample from Escherichia coli


text: live

text: Generic

text: Reference genome of RecA E. coli strain

text: Escherichia coli

text: RecA

text: Generic sample from Escherichia coli


text: live

text: Generic

text: Genome of mutagenized CC102 E. coli strain grew on low medium

text: Escherichia coli

text: Generic sample from Escherichia coli


text: live

text: Generic

text: Genome of mutagenized CC102 E. coli strain grew on high medium

text: Escherichia coli

text: Generic sample from Escherichia coli


text: live

text: Generic

text: Genome of mutagenized RecA E. coli strain grew on high medium

text: Escherichia coli

text: RecA

text: Generic sample from Escherichia coli


name: Caenorhabditis elegans lin-35 L1 RNA sample 1

text: University of Washington Genome Sciences

text: live

text: Generic

text: For the lin-35(n745) L1s, we grow the strain at 20 deg until majority of animals are gravid. 2) We bleach the worms to collect embryos, then place the embryos in S-basal buffer and incubate at 20 deg overnight to hatch into L1s. 3) We then put the hatched ~7K L1s on each of 5-6 seeded NGM plates at 20 deg, grow ~3 days until gravid again 4) We then bleach the worms for embryos, put the embryos in S-basal and incubate at 20 deg overnight to hatch into starved L1s. 5) We then place all L1s onto one large seeded plate for 4 hours at 25 deg. 6) We then wash off all worms from food and let them digest their ingested food for one hour in S basal 7) We spin down, monitor pellet size, and then add four volumes of Trizol, perform three rounds of freeze/thaw, and submit for RNA isolation. Run 30KCMAAXX = 150-250 bp size selection, 1% agarose gel, GAPipeline-1.0 Run 30k3FAAXX = 250-350 bp size selection, 1% agarose gel, GAPipeline-1.0 Run 311T6AAXX, 311U1AAXX = 250-350 bp size selection, 1.5% agarose gel, GAPipeline-1.3 Quality values = solexa/illumina (not converted to phred)

text: Caenorhabditis elegans

text: Generic sample from Caenorhabditis elegans


name: Caenorhabditis elegans L4 male RNA sample 1

text: live

text: Generic

text: For the males we 1) grow dpy-28(y1);him-8(e1489) strain at 15 deg until majority of animals are gravid. 2) We bleach the worms to collect embryos, and then place the embryos in S-basal buffer an d incubate at 25 deg over night to hatch the L1s. 3) We then put the hatched L1s on a seeded NGM plate at 25 deg for 30 hours. At 30 hours, the resulting worms are in the L4 stage, and all are males because the hermpahrodites die due to a failure to initiate dosage compensation, as confirmed by examination under the dissecting microscope. 4) At this time, the worms are harvested, placed into Trizol, and then subjected to three rounds of freeze/thaw, before being submitted for RNA isolation. Quality values are still in solexa/illumina format and have not been converted to phred values.

text: Caenorhabditis elegans


name: Caenorhabditis elegans early embryo RNA sample 1

text: live

text: Generic

text: (1) embryos were allowed to hatch out and arrest as L1s in S-Basal overnight; (2) the next morning, 10,000 L1s were plated onto 5 large, seeded plates each (50,000 worms total); (3) 3 days later, when worms were gravid adults, they were bleached again to obtain embryos; (4) the embryo sample was divided in half (obtained an average of about 400ul of packed embryos total, those were split up into two 200ul samples of embryos); (5) one ~200ul sample was treated immediately to 3 rounds of freeze/thaw in liquid nitrogen/37C water bath and submitted to RNA isolation protocols; this sample was the early embryo sample. Quality values are phred quality values for runs 20EULAAXX and 20EU1AAXX.

text: Caenorhabditis elegans


name: Caenorhabditis elegans early embryo RNA sample 2

text: live

text: Generic

text: (1) embryos were allowed to hatch out and arrest as L1s in S-Basal overnight; (2) the next morning, 10,000 L1s were plated onto 5 large, seeded plates each (50,000 worms total); (3) 3 days later, when worms were gravid adults, they were bleached again to obtain embryos; (4) the embryo sample was divided in half (obtained an average of about 400ul of packed embryos total, those were split up into two 200ul samples of embryos); (5) one ~200ul sample was treated immediately to 3 rounds of freeze/thaw in liquid nitrogen/37C water bath and submitted to RNA isolation protocols; this sample was the early embryo sample. Quality values are Illumina/Solexa quality values (have not been converted to phred) for runs 30KECAAXX, 30DH0AAXX, 30K65AAXX, and 30DEBAAXX).

text: Caenorhabditis elegans


name: Caenorhabditis elegans late embryo RNA sample 1

text: live

text: Generic

text: (1) embryos were allowed to hatch out and arrest as L1s in S-Basal overnight; (2) the next morning, 10,000 L1s were plated onto 5 large, seeded plates each (50,000 worms total); (3) 3 days later, when worms were gravid adults, they were bleached again to obtain embryos; (4) the embryo sample was divided in half (obtained an average of about 400ul of packed embryos total, those were split up into two 200ul samples of embryos); (5) one ~200ul sample was treated immediately to 3 rounds of freeze/thaw in liquid nitrogen/37C water bath and submitted to RNA isolation protocols; this sample was the early embryo sample. (6) the second ~200ul of embryos was placed into 50ml of S-Basal and incubated at 20C with shaking for about 4.5 hours. After the 4.5 hours, 10ul were checked under the Nomarski optics and the presence of mostly comma-stage embryos and only ~1 hatched L1 animal was confirmed. This sample was then treated to 3 rounds of freeze/thaw and submitted for RNA isolation; this sample is the late embryo sample. Quality values are phred quality values for runs 20EULAAXX and 20EURAAXX.

text: Caenorhabditis elegans


name: Caenorhabditis elegans late embryo RNA sample 2

text: live

text: Generic

text: (1) embryos were allowed to hatch out and arrest as L1s in S-Basal overnight; (2) the next morning, 10,000 L1s were plated onto 5 large, seeded plates each (50,000 worms total); (3) 3 days later, when worms were gravid adults, they were bleached again to obtain embryos; (4) the embryo sample was divided in half (obtained an average of about 400ul of packed embryos total, those were split up into two 200ul samples of embryos); (5) one ~200ul sample was treated immediately to 3 rounds of freeze/thaw in liquid nitrogen/37C water bath and submitted to RNA isolation protocols; this sample was the early embryo sample. (6) the second ~200ul of embryos was placed into 50ml of S-Basal and incubated at 20C with shaking for about 4.5 hours. After the 4.5 hours, 10ul were checked under the Nomarski optics and the presence of mostly comma-stage embryos and only ~1 hatched L1 animal was confirmed. This sample was then treated to 3 rounds of freeze/thaw and submitted for RNA isolation; this sample is the late embryo sample. Quality values are Illumina/Solexa quality values.

text: Caenorhabditis elegans


name: Caenorhabditis elegans mid-L1 RNA sample 1

text: live

text: Generic

text: Embryos were collected by bleaching from mixed stage hermaphrodite populations. The embryos surviving bleach treatment were incubated without food, causing them to arrest after hatching as L1 stage larvae. Starved L1 larvae were plated in the presence of food and raised at 25 degrees Celsius. Staging was determined by examining a subset of animals under Nomarski optics at intervals for vulval and germline development. Animals were collected at the mid-L2, mid-L3, mid-L4, and young adult (pre-gravid) stages and washed in S basal buffer. Exact times for growth after plating of starved L1s (all at 25 degrees C) were as follows: (1) L1 worms were grown for 4 hours. Run 30K6TAAXX was labeled L1_ce0077_rw007 and had unexpectedly short inserts with sequences reading through to the linker. They took the same size-fractionated DNA and ran it on another gel. Subsequent runs were then labeled as L1_ce0132_rw007. Reads are in read pairs. The _1 files are the forward reads and the _2 files are the reverse reads. The forward and reverse reads have the same name except there is a trailing /1 on the forward reads and /2 on the reverse reads. Quality values are Solexa/Illumina quality values.

text: Caenorhabditis elegans


text: Beijing Genome Institute

text: live

text: Generic

text: Sichuan province, China B. mandarina Ziyang

text: Bombyx mandarina

text: Generic sample from Bombyx mandarina


text: Beijing Genome Institute

text: live

text: Generic

text: Sichuan province, China B. mandarina Nanchong

text: Bombyx mandarina

text: Generic sample from Bombyx mandarina


text: Beijing Genome Institute

text: live

text: Generic

text: Sichuan province, China B. mandarina Hongya

text: Bombyx mandarina

text: Generic sample from Bombyx mandarina


text: Beijing Genome Institute

text: live

text: Generic

text: Sichuan province, China B. mandarina Pengshan

text: Bombyx mandarina

text: Generic sample from Bombyx mandarina


text: Beijing Genome Institute

text: live

text: Generic

text: Shanxi province, China B. mandarina Ankang

text: Bombyx mandarina

text: Generic sample from Bombyx mandarina


text: Beijing Genome Institute

text: live

text: Generic

text: Hubei province, China B. mandarina Yichang

text: Bombyx mandarina

text: Generic sample from Bombyx mandarina


text: Beijing Genome Institute

text: live

text: Generic

text: Jiangsu province, China B. mandarina Yancheng

text: Bombyx mandarina

text: Generic sample from Bombyx mandarina


text: Beijing Genome Institute

text: live

text: Generic

text: Sichuan province, China B. mandarina Luzhou

text: Bombyx mandarina

text: Generic sample from Bombyx mandarina


text: Beijing Genome Institute

text: live

text: Generic

text: Hunan province, China B. mandarina Hunan

text: Bombyx mandarina

text: Generic sample from Bombyx mandarina


text: Beijing Genome Institute

text: live

text: Generic

text: Jiangsu province, China B. mandarina Suzhou

text: Bombyx mandarina

text: Generic sample from Bombyx mandarina


text: Beijing Genome Institute

text: live

text: Generic

text: Chongqing, China B. mandarina Rongchang

text: Bombyx mandarina

text: Generic sample from Bombyx mandarina


embryos, 0-2 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


embryos, 2-4 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


embryos, 4-6 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


embryos, 6-8 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


embryos, 8-10 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


embryos, 10-12 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


embryos, 12-14 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


embryos, 14-16 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


embryos, 16-18 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


embryos, 18-20 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


embryos, 20-22 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


embryos, 22-24 hr

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


L1 stage larvae

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


L2 stage larvae

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


L3 stage larvae, 12 hr post-molt

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


L3 stage larvae, dark blue gut PS(1-2)

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


L3 stage larvae, light blue gut PS(3-6)

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


adult female, 1 day after eclosion

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


adult female, 30 days after eclosion

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


adult female, 5 days after eclosion

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


adult male, 1 day after eclosion

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


adult male, 5 days after eclosion

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


adult male, 30 days after eclosion

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


pupae, 12 hr after WPP

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


pupae, 24 hrs after WPP

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


pupae, 4 days after WPP

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


text: Penn State University - dePamphilis Lab

text: live

text: Generic

text: Total RNA from Orobanche aegyptiaca, pre-emergence from soil - shoots

text: Phelipanche aegyptiaca

text: Generic sample from Orobanche aegyptiaca


text: Bangor University

text: live

text: Generic

text: These sequences derive from 454 sequencing of nSSU 18S amplicons from environmental sediment samples from Prestwick and Littlehampton (UK 2007) low tide sites. The amplicon genomic region is defined by the primers SSUFO4 (5’-GCTTGTAAAGATTAAGCC-3’) and SSUR22 (5’- GCCTGCTGCCTTCCTTGGA-3’) and the following MID tag oligos were used to label each independent sample: GTGAG Prestwick_1A TACGC Prestwick_1B GTCAC Prestwick_1C CTACT Prestwick_2ABC TCTGT Prestwick_3ABC GATGA Prestwick_4ABC TGACT Prestwick_5ABC ATGCT Prestwick_6ABC TCGCT Prestwick_7ABC TATAC Prestwick_8ABC ACGAC Littlehampton_1A TCGCT Littlehampton_1B TACAT Littlehampton_1C Therefore, following 454 processing, each sequence should commence with the 5bp identifying tag, followed by the primer SSUF04, followed by the organismal sequence data.

text: sediment metagenome

text: Generic sample from Eukaryota


S2 control cells

text: Institut Pasteur - Christophe Antoniewski

text: live

text: Generic

text: Drosophila S2 cell line obtained from Invitrogen

text: Drosophila melanogaster


text: Max Planck Institute for Molecular Genetics

text: live

text: Generic

text: Genome of mutagenized RecA E. coli strain plated immediately after mutagenesis

text: Escherichia coli

text: RecA

text: Generic sample from Escherichia coli


text: live

text: Generic

text: Genome of mutagenized CC102 E. coli strain grew on low medium

text: Escherichia coli

text: Generic sample from Escherichia coli


text: live

text: Generic

text: Genome of mutagenized CC102 E. coli strain grew on high medium

text: Escherichia coli

text: Generic sample from Escherichia coli


P19 S2 cells

text: live

text: Generic

text: S2 cell lines were transfected with the pAWH-P19 construct and stably transformed under blasticidin selection, following the manufacturer instructions (Invitrogen).

text: Drosophila melanogaster


text: Center for Comparative Genomics and Bioinformatics, Pennsylvania State University

text: live

text: Generic

text: Sediment metagenome

text: marine sediment metagenome

text: Generic sample from marine sediment metagenome


NLS-P19 S2 cells

text: live

text: Generic

text: S2 cell lines were transfected with the pAWH-NLS-P19 construct and stably transformed under blasticidin selection, following the manufacturer instructions (Invitrogen).

text: Drosophila melanogaster


text: Center for Comparative Genomics and Bioinformatics

text: live

text: Generic

text: marine metagenome

text: Generic sample from marine metagenome


text: live

text: Generic

text: Planktonic microbial communities from Sargasso Sea, BATS Station 50m depth (BATS216)

text: marine metagenome

text: Generic sample from marine metagenome


text: live

text: Generic

text: Planktonic microbial communities from Sargasso Sea, BATS Station, 100m depth (BATS216)

text: marine metagenome

text: Generic sample from marine metagenome


text: Penn State University - dePamphilis Lab

text: live

text: Generic

text: Total RNA from Orobanche aegyptiaca, pre-emergence from soil - roots

text: Phelipanche aegyptiaca


text: Penn State University - dePamphilis Lab

text: live

text: Generic

text: Total RNA from Orobanche aegyptiaca, vegetative structures - leaves and stems.

text: Phelipanche aegyptiaca


text: Penn State University - dePamphilis Lab

text: live

text: Generic

text: Total RNA from Orobanche aegyptiaca reproductive structures - floral buds (up to anthesis)

text: Phelipanche aegyptiaca

text: Generic sample from Orobanche aegyptiaca


text: Penn State University - dePamphilis Lab

text: live

text: Generic

text: Total RNA from Striga hermonthica reproductive structures - floral buds (up to anthesis).

text: Striga hermonthica

text: Generic sample from Striga hermonthica


name: Caenorhabditis elegans Adult spe-9 RNA sample 1

text: University of Washington Genome Sciences

text: live

text: Generic

text: Synchronized spe-9(hc88) L1 worms (C. elegans Bristol N2) were cultured at 23 degrees Celsius for 8 days after L4 molt. Quality values are still in Solexa/Illumina format and have not been converted to phred values. Run 3012AAAXX and 301C1AAXX were run using GAPipeline1.4. Runs 3013TAAXX and 301YKAAXX were run using GAPipeline1.3.

text: Caenorhabditis elegans

text: Generic sample from Caenorhabditis elegans


name: Caenorhabditis elegans embryo him-8(e1480) RNA sample 1

text: live

text: Generic

text: him-8(e1480) embryos (C. elegans Bristol N2) were grown at 20°C; about 50% of those embryos were males. Quality values are still in Solexa/Illumina format and have not been converted to phred values.

text: Caenorhabditis elegans


name: Caenorhabditis elegans dauer daf-2(el370) RNA sample 1

text: live

text: Generic

text: Synchronized daf-2(e1370) L1 worms were cultured at 25°C for 91 hrs until 100% of the worms are resistant to 1% SDS treatment Quality values are still in Solexa/Illumina format and have not been converted to phred values.

text: Caenorhabditis elegans


name: Caenorhabditis elegans dauer entry daf-2(e1370) RNA sample 1

text: live

text: Generic

text: Synchronized daf-2(e1370) L1 worms (C. elegans Bristol N2) cultured at 25 degrees C for 48 hrs when about 50% of worms are resistant to 1% SDS treatment (Dauer assay). Quality values are still in solexa/illumina format and have not been converted to phred values.

text: Caenorhabditis elegans


name: Caenorhabditis elegans dauer exit daf-2(e1370) RNA sample 1

text: live

text: Generic

text: dauer daf-2(e1370) worms (C. elegans Bristol N2) (after culturing synchronized daf-2(e1370) L1 worms at 25°C for 91 hrs) shifted to 15°C to allow recovering from dauer for 12hrs when there are about 24% worms are resistant to 1% SDS treatment. Illumina/Solexa quality values.

text: Caenorhabditis elegans


Nasonia Longicornis

text: Baylor College of Medicine

text: live

text: Generic

text: Nasonia Longicornis

text: Nasonia longicornis

text: Generic sample from Nasonia longicornis


Nasonia Giraulti

text: Baylor College of Medicine

text: live

text: Generic

text: Nasonia Giraulti

text: Nasonia giraulti

text: Generic sample from Nasonia giraulti


name: Caenorhabditis elegans mid L4 RNA sample 2

text: live

text: Generic

text: Animals were synchronized by treating a mixed population with bleach to collect embryos. The embryos were incubated without food, causing the larvae to arrest at the L1 stage upon hatching. Starved L1 larvae were plated in the presence of food and raised at 25 degrees Celsius. Staging was determined by examining a subset of animals under Nomarski optics at intervals for vulval and germline development. Animals were collected at mid-L4 stage and washed in S basal buffer. Exact times for growth after plating of starved L1s (all at 25 degrees C) were as follows: L4 for 34.25 hours (vulvae are in Christmas tree stage gonad has passed bend, sperm are present). Quality values are solexa/illumina format.

text: Caenorhabditis elegans


L3 stage larvae, clear gut PS(7-9)

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


WPP

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


pupae, 2 days after WPP

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


pupae, 3 days after WPP

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Gender : Sample Type : genomic dna Description :

text: Biomphalaria glabrata

text: Generic sample from Biomphalaria glabrata


Eisenia fetida

text: U.S. Army Engineer Research and Development Center

text: live

text: Generic

text: Eisenia fetida

text: Generic sample from Eisenia fetida


text: San Diego State University

text: live

text: Generic

characteristic: collection date

text: microbial fraction from Microbial community from a high salinity saltern in San Diego, CA

text: 32.60397 N 117.098299 W

characteristic: lat lon

text: saltern metagenome

text: Generic sample from saltern metagenome


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC first public

text: live

text: Generic

text: Nasutitermes corniger lab culture

text: uncultured bacterium

text: Generic sample from uncultured bacterium


StreptoIniaeGenome

text: San Diego State University

characteristic: INSDC last update

text: live

text: Generic

text: Streptococcus iniae

text: 33.537594 N 116.097751 W

text: Streptococcus iniae

text: Generic sample from Streptococcus iniae


text: San Diego State University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Tampa Bay phage from induction experiment

text: 27.761504 N 82.632981 W

text: marine metagenome

text: Generic sample from marine metagenome


text: Berkeley Drosophila Genome Project

text: live

characteristic: INSDC status

text: Generic

text: Normalized pooling of 2,446 RT-PCR products

text: Drosophila melanogaster


small RNA from 3rd instar larvae (1)

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

text: source: Drosophila melanogaster 3rd instar larvae; description:

text: 3rd instar larvae

characteristic: developmental stage

text: Drosophila melanogaster

text: Canton S


small RNA from 2-4 day old pupae (1)

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: source: Drosophila melanogaster 2-4 day old pupae; description:

text: 2-4 day old pupae

text: Drosophila melanogaster

text: Canton S


small RNA from 3rd instar larvae (2)

characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: 3rd instar larvae

text: Drosophila melanogaster

text: Canton S

characteristic: title


small RNA from 2-4 day old pupae (2)

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

characteristic: description

text: 2-4 day old pupae

text: Drosophila melanogaster

text: Canton S


small RNAs from adult female head

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Drosophila melanogaster adult female head; description:

text: adult female head

text: Drosophila melanogaster

characteristic: organism

text: Canton S


text: Virginia Bioinformatics Institute

text: live

text: Generic

text: Helicobacter pylori v225d

text: Generic sample from Helicobacter pylori v225d


text: Washington University Center for Genome Sciences

text: live

text: Generic

text: Helicobacter pylori strain from patient 438 at time 0 with moderate atrophy(2)

text: Helicobacter pylori HPKX_438_AG0C1

text: Generic sample from Helicobacter pylori HPKX_438_AG0C1


In_vitro (2 biological replicates)

characteristic: GEO Accession

text: Gene Expression Omnibus

text: live

text: Generic

text: source: S. cerevisiae genomic DNA and histone octamer from chicken erythrocytes

text: Saccharomyces cerevisiae

text: YLC8 [MAT(a) ura3(?) leu2(?) his3(?) met15(?)]

text: Generic sample from Saccharomyces cerevisiae


text: Segal Lab, Computer Science and Applied Mathematics, Weizmann Institute of Science

text: live

text: Generic

text: chromatin

characteristic: genomic dna

text: Dextrose

characteristic: growth condition

text: Saccharomyces cerevisiae

text: S. cerevisiae BY4741

text: YPD 6 biological replicates (4 non-crosslinked, 2 crosslinked)

characteristic: yeast strain


characteristic: INSDC first public

text: live

text: Generic

text: chromatin

text: Galactose

text: Saccharomyces cerevisiae

text: S. cerevisiae BY4741

text: Galactose 3 replicates (2 non-crosslinked, 1 crosslinked)


characteristic: INSDC last update

text: live

text: Generic

text: chromatin

text: Ethanol

text: Saccharomyces cerevisiae

text: S. cerevisiae BY4741

text: Ethanol 4 replicates (2 non-crosslinked, 2 crosslinked)


text: Hughes Lab, University of Toronto

characteristic: INSDC secondary accession

text: live

text: Generic

text: synthetic construct

text: Reconstituted pool (DT and ES sequences)

text: mononucleosome

characteristic: synthetic oligonucleotide

text: Reconstituted and Input pool


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Helicobacter pylori strain from patient 438 at time 4 with gastric cancer

text: Helicobacter pylori HPKX_438_CA4C1

characteristic: strain

text: Generic sample from Helicobacter pylori HPKX_438_CA4C1


Pru Toh Daeng peat swamp

text: National Center of Genetic Engineering and Biotechnology (BIOTEC), Thailand

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: The collection site was at Pru Toh Daeng peat swamp forest in Narathiwat province, southern Thailand in 2007. Samples were randomly collected from top surface sediments to 30 cm deep.

text: soil metagenome

text: Generic sample from soil metagenome


characteristic: External Id

text: Yale University, State Lab

text: live

text: Generic

text: Male Anterior Temporal Lobe from brain tissue, age 62, NG491-1

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


text: Yale University, State Lab

characteristic: INSDC center name

text: live

text: Generic

text: Female Anterior Temporal Lobe from brain tissue, age 43, NG352-1

characteristic: description

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Yale University, State Lab

text: live

text: Generic

text: Female Anterior Temporal Lobe from brain tissue, age 52, NG521-1

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


text: Yale University, State Lab

text: live

text: Generic

text: Female Anterior Temporal Lobe from brain tissue, 22 weeks gestation, Patient11

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Yale University, State Lab

text: live

text: Generic

text: Female Anterior Temporal Lobe from brain tissue, 20 weeks gestation

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Yale University, State Lab

text: live

text: Generic

text: Male Anterior Temporal Lobe from brain tissue, 23 weeks gestation

text: Homo sapiens

text: Generic sample from Homo sapiens


Zygaena filipendulae transcriptome

text: Copenhagen University

text: live

text: Generic

text: L7 larvae were collected from a fallow field in Kvistg*rd north of Copenhagen, Denmark in 2006 by Mika Zagrobelny and reared for a week on L. corniculatus plants devoid of CNglcs. The gut was removed from one larvae and total RNA was extracted from the remaining part of the body using RNeasy plant mini kit from Qiagen (Cat. No. 74904)by Niels Bjerg Jensen. Integrity of the RNA was verified using an Agilent 2100 Bioanalyzer before total RNA was shipped to Eurofins MWG Operon, Inc, Germany (http://www.eurofinsdna.com/home.html). Eurofins MWG Operon performed mRNA purification and normalization in order to thin out the highly abundant transcripts before 454 pyrosequencing. cDNA was produced and fragmented by nebulization and 454 pyrosequencing carried out using a GS FLX system.

text: Zygaena filipendulae

text: Generic sample from Zygaena filipendulae


Soybean 2

text: Institute of Molecular Biology University of Zurich

text: live

text: Generic

text: Genomic DNA from the microbial phyllosphere community of leaves from agriculturally grown soybean (Glycine max)

text: phyllosphere metagenome

text: Generic sample from phyllosphere metagenome


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: source: ESC; description: miRNA profiling

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: embryonic fibroblasts

text: source: MEF; description: miRNA profiling

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: neural precursor cell

text: source: neural precursor cells; description: miRNA profiling

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: embryonic stem cell

text: source: ZHBTc4 cells; description: miRNA profiling

text: Mus musculus

text: Generic sample from Mus musculus

text: untreated

characteristic: treatment


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: embryonic stem cell

text: Mus musculus

text: Generic sample from Mus musculus

text: 12 hours doxycyclin


text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: embryonic stem cell

text: Mus musculus

text: Generic sample from Mus musculus

text: 24 hours doxycyclin


HEK293T cells rep_1

text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

text: HEK 293T

text: source: Human embryonic kidney cells; description: RNA-seq

text: Homo sapiens

text: Generic sample from Homo sapiens


HEK293T cells rep_2

text: Gene Expression Omnibus

text: live

text: Generic

text: HEK 293T

text: Homo sapiens

text: Generic sample from Homo sapiens


B cells rep_1

text: Gene Expression Omnibus

text: live

text: Generic

text: Ramos B cells

text: source: Ramos lymphoma B cells; description: RNA-seq

text: Homo sapiens

text: Generic sample from Homo sapiens


B cells rep_2

text: Gene Expression Omnibus

text: live

text: Generic

text: Ramos B cells

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Washington University Center for Genome Sciences

text: live

text: Generic

text: Helicobacter pylori HPKX_1039_AG0C1

text: Generic sample from Helicobacter pylori HPKX_1039_AG0C1


text: live

text: Generic

text: Helicobacter pylori HPKX_1039_AG0C2

text: Generic sample from Helicobacter pylori HPKX_1039_AG0C2


text: live

text: Generic

text: Helicobacter pylori HPKX_1039_AG4C1

text: Generic sample from Helicobacter pylori HPKX_1039_AG4C1


text: live

text: Generic

text: Helicobacter pylori HPKX_1039_AG4C2

text: Generic sample from Helicobacter pylori HPKX_1039_AG4C2


text: live

text: Generic

text: Helicobacter pylori HPKX_1172_AG0C1

text: Generic sample from Helicobacter pylori HPKX_1172_AG0C1


text: live

text: Generic

text: Helicobacter pylori HPKX_1172_AG0C2

text: Generic sample from Helicobacter pylori HPKX_1172_AG0C2


text: live

text: Generic

text: Helicobacter pylori HPKX_1172_AG4C1

text: Generic sample from Helicobacter pylori HPKX_1172_AG4C1


text: live

text: Generic

text: Helicobacter pylori HPKX_1172_AG4C2

text: Generic sample from Helicobacter pylori HPKX_1172_AG4C2


text: live

text: Generic

text: Helicobacter pylori HPKX_1259_NL0C1

text: Generic sample from Helicobacter pylori HPKX_1259_NL0C1


text: live

text: Generic

text: Helicobacter pylori HPKX_1259_NL0C2

text: Generic sample from Helicobacter pylori HPKX_1259_NL0C2


text: live

text: Generic

text: Helicobacter pylori HPKX_1259_NL4C1

text: Generic sample from Helicobacter pylori HPKX_1259_NL4C1


text: live

text: Generic

text: Helicobacter pylori HPKX_1259_NL4C2

text: Generic sample from Helicobacter pylori HPKX_1259_NL4C2


text: live

text: Generic

text: Helicobacter pylori HPKX_1379_NL0C1

text: Generic sample from Helicobacter pylori HPKX_1379_NL0C1


text: live

text: Generic

text: Helicobacter pylori HPKX_1379_NL0C2

text: Generic sample from Helicobacter pylori HPKX_1379_NL0C2


text: live

text: Generic

text: Helicobacter pylori HPKX_1379_NL4C1

text: Generic sample from Helicobacter pylori HPKX_1379_NL4C1


text: live

text: Generic

text: Helicobacter pylori HPKX_1379_NL4C2

text: Generic sample from Helicobacter pylori HPKX_1379_NL4C2


text: Washington University Center for Genome Sciences

text: live

text: Generic

text: Helicobacter pylori HPKX_345_AG4C1

text: Generic sample from Helicobacter pylori HPKX_345_AG4C1


text: live

text: Generic

text: Helicobacter pylori HPKX_345_AG4C2

text: Generic sample from Helicobacter pylori HPKX_345_AG4C2


text: live

text: Generic

text: Helicobacter pylori HPKX_345_NL0C1

text: Generic sample from Helicobacter pylori HPKX_345_NL0C1


text: live

text: Generic

text: Helicobacter pylori HPKX_345_NL0C2

text: Generic sample from Helicobacter pylori HPKX_345_NL0C2


text: live

text: Generic

text: Helicobacter pylori HPKX_438_AG0C2

text: Generic sample from Helicobacter pylori HPKX_438_AG0C2


text: live

text: Generic

text: Helicobacter pylori HPKX_438_CA4C2

text: Generic sample from Helicobacter pylori HPKX_438_CA4C2


text: SLU

text: live

text: Generic

text: Compost produced by composting of urban market crop wastes in Kampala city, Uganda

text: compost metagenome

text: Generic sample from Bacteria


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Gender : Sample Type : genomic dna Description :

text: Zea mays

text: Generic sample from Zea mays


name: The genomic DNA of Mouse DBA/2J isolated from liver

text: University of Tennessee Health Science Center - Center for Integrative and Translational Genomics

text: live

text: Generic

text: Two DBA/2J females (caseID:110608.33 and caseID:120508.06) from the same litter (F generation 224; date of birth: May 10, 2008) were used. The genomic DNA was isolated from liver using the QIACube instrument and the DNeasy kit (Qiagen) following the manufacturer protocols.

text: Mus musculus

text: Generic sample from Mus musculus


text: BC Cancer Agency Michael Smith Genome Sciences Centre

text: live

text: Generic

text: Caenorhabditis elegans

text: Generic sample from Caenorhabditis elegans


text: Center for Comparative Genomics and Bioinformatics

text: live

text: Generic

characteristic: date

characteristic: depth

text: Bacterioplankton sample from HOT Station ALOHA, Central North Pacific Gyre, 500m depth

characteristic: latitude

characteristic: longitude

text: marine metagenome

text: Generic sample from marine metagenome


Trichoplax adhaerens

text: University of Florida - Leonid Moroz

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Total RNA was isolated and pooled from 6 animals and pooled. cDNA librarie were generated and sequenced using a 454 platform.

text: Trichoplax adhaerens

text: Generic sample from Trichoplax adhaerens


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: Cellular Dynamics International

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cell H1

text: undifferentiated

characteristic: differentiation stage

characteristic: line

text: CDI protocol

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: REMC batch1

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: batch

text: Cellular Dynamics International

text: Cell Line

text: Human embryonic stem cell H1

characteristic: description

text: undifferentiated

text: CDI protocol

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Cellular Dynamics International

text: Cell Line

text: Human embryonic stem cell H1

text: undifferentiated

text: Normal

characteristic: disease

text: genomic DNA

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: Cellular Dynamics International

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cell H1

text: undifferentiated

characteristic: differentiation stage

characteristic: line

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Cellular Dynamics International

text: Cell Line

text: Human embryonic stem cell H1

text: undifferentiated

text: Normal

text: genomic DNA

text: Homo sapiens

text: male

characteristic: sex

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: batch

text: Cellular Dynamics International

text: Cell Line

text: human embryonic stem cells H1

characteristic: description

text: undifferentiated

text: genomic DNA

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


R2 Neuron

characteristic: External Id

text: University of Florida - Leonid Moroz

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: The giant cholinergic neuron R2 was isolated from the CNS of Aplysia. Total RNA was extracted and cDNA librarie were generated and sequenced using a 454 platform. This data is part of a comparative effort for single neurons in Aplysia.

text: Aplysia californica

characteristic: organism

text: Generic sample from Aplysia californica


CNS

text: University of Florida - Leonid Moroz

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Transcritome analysis of Nautilus pompilus. Total RNA was extracted from the CNS, Buccal ganglia, retina, and aorta of Nautilus pompilus. cDNA librarie were generated and sequenced using a 454 platform. This data is part of a comparative effort for cephalopod mollusc.

text: Nautilus pompilius

text: Generic sample from Nautilus pompilius


Axoplasm of Loligo pealei

text: University of Florida - Leonid Moroz

text: live

text: Generic

text: Transcritome analysis from the Axoplasm and Central Nervous System (CNS) of Loligo pealei. Total RNA was extracted from the CNS and Axoplasm of Loligo pealei. cDNA librarie were generated and sequenced using a 454 platform. This data is part of a comparative effort for cephalopod mollusc.

text: Doryteuthis pealeii

text: Generic sample from Doryteuthis pealeii


CNS of Octopus vulgaris

text: University of Florida - Leonid Moroz

text: live

text: Generic

text: Transcritome analysis from the Central Nervous System (CNS) of Octopus vulgaris. Total RNA was extracted from the retina,supraesophageal mass,optic lobes of Octopus vulgaris. cDNA librarie were generated and sequenced using a 454 platform. This data is part of a comparative effort for cephalopod mollusc.

text: Octopus vulgaris

text: Generic sample from Octopus vulgaris


CNS of Cancer borealis

text: University of Florida - Leonid Moroz

text: live

text: Generic

text: Total RNA was extrated for the CNS,stomatogastric ganglion, and the single neuron LP for cancer borealis. cDNA libraries were made from these individual tissues and sequenced using the 454 platform.

text: Cancer borealis

text: Generic sample from Cancer borealis


Xenoturbella bocki

text: University of Florida - Leonid Moroz

text: live

text: Generic

text: Total RNA is extracted from the total animal, Xenoturbella bocki

text: Xenoturbella bocki

text: Generic sample from Xenoturbella bocki


Arboral organ of Pleurobrachia bachei

text: University of Florida - Leonid Moroz

text: live

text: Generic

text: Transcritome analysis from Pleurobrachia bachei. Total RNA was extracted from the arboral organ or the total animal Pleurobrachia bachei. cDNA librarie were generated and sequenced using a 454 platform.

text: Pleurobrachia bachei

text: Aboral organ Transcriptome


text: Portland Alcohol Research Center, Oregon Health & Science University and VA Medical Center

text: live

text: Generic

text: DNA sequencing of B6 BACs (RPCI-23 from CHORI) covering ~3Mb region of mouse Chr 1

text: Mus musculus

text: Generic sample from Mus musculus


text: live

text: Generic

text: DNA sequencing of D2 BACs (MM_DBa from CUGI) covering ~3Mb region of mouse Chr 1

text: Mus musculus

text: Generic sample from Mus musculus


VLUmetagenome

text: Medical Biofilm Research Institute

text: live

text: Generic

text: microbial diversity in pooled VLU sample

text: Homo sapiens

text: Generic sample from Homo sapiens