characteristic: INSDC center name

text: live

text: Generic

text: Peripheral blood B-lymphocytes

text: normal control

text: Homo sapiens

text: HpaII (New England Biolabs, R0171L)

text: whole blood

text: MRE-Seq_Control_1 using HpaII


status: PUBLIC

characteristic: External Id

text: Ian D. Hickson lab, Nordea Centre for Healthy Aging, Faculty Of Health Sciences Department of Cellular and Molecular Medicine, University of Copenhagen

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Peripheral blood B-lymphocytes

tag: attribute

characteristic: cell type

text: normal control

characteristic: genotype/variation

text: Homo sapiens

characteristic: organism

text: HpaII (New England Biolabs, R0171L)

characteristic: restriction enzyme

text: whole blood

characteristic: tissue

text: MRE-Seq_Control_2 using HpaII

characteristic: title


text: live

text: Generic

text: EBV-Transformed B lymphocytes

characteristic: chip antibody

text: translocation t(8;20)(p12;q11.23) carriers

text: Homo sapiens

text: whole blood


text: live

text: Generic

text: EBV-Transformed B lymphocytes

text: Homo sapiens

text: ChIP-Seq_Carrier_EBV-transformed_H3K27me3

text: whole blood


text: live

text: Generic

text: EBV-Transformed B lymphocytes

text: Homo sapiens

text: ChIP-Seq_Carrier_EBV-transformed_H3K4me3

text: whole blood


text: live

text: Generic

text: EBV-Transformed B lymphocytes

text: IgG

text: Homo sapiens

text: whole blood


text: Audrey Gasch, Genetics, University of Wisconsin-Madison

text: live

text: Generic

text: Saccharomyces cerevisiae S288C

text: nucleosome-bound DNA

characteristic: sequenced molecule

text: yeast

characteristic: strain

text: 0 min

characteristic: time

text: none (untreated)

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Saccharomyces cerevisiae S288C

text: nucleosome-bound DNA

text: yeast

text: 4 min

text: 0.4mM H2O2


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Saccharomyces cerevisiae S288C

text: nucleosome-bound DNA

text: yeast

text: 12 min

text: 0.4mM H2O2


text: live

text: Generic

characteristic: SRA accession

text: Saccharomyces cerevisiae S288C

characteristic: organism

text: nucleosome-bound DNA

text: yeast

text: 20 min

text: 0.4mM H2O2


text: live

text: Generic

text: Saccharomyces cerevisiae S288C

text: nucleosome-bound DNA

text: yeast

text: 40 min

text: 0.4mM H2O2


text: live

text: Generic

text: Saccharomyces cerevisiae S288C

text: nucleosome-bound DNA

text: yeast

text: 60 min

text: 0.4mM H2O2


text: Developmental Genomics, LCDB, NIDDK, NIH

text: live

text: Generic

text: 5 day old mated adults

characteristic: developmental stage

text: female

characteristic: gender

text: Drosophila melanogaster

text: Whole flies, 5 day mated adults

text: whole flies

characteristic: tissue


text: live

text: Generic

text: 5 day old mated adults

text: male

text: Drosophila melanogaster

text: Whole flies, 5 day mated adults

text: whole flies

characteristic: title


text: live

text: Generic

text: 5 day old mated adults

text: male

text: Drosophila melanogaster

text: Whole flies, 5 day mated adults

characteristic: strain

text: whole flies

text: Wholeflies_EDHsp60cED478_Male_R3_SOLiD_a


text: live

text: Generic

text: 5 day old mated adults

text: male

text: Drosophila melanogaster

text: Whole flies, 5 day mated adults

text: whole flies

text: Wholeflies_EDHsp60cED478_Male_R3_SOLiD_b


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) dried, chipped sorghum-sudangrass biomass (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 3 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

characteristic: description

text: Fungi

text: Sorghum-amended microcosm, day 3, replicate 1


text: live

text: Generic

text: Fungi

text: Sorghum-amended microcosm, day 3, replicate 2


text: live

text: Generic

text: Fungi

text: Sorghum-amended microcosm, day 3, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) dried, chipped sorghum-sudangrass biomass (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 7 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Sorghum-amended microcosm, day 7, replicate 1


text: live

text: Generic

text: Fungi

text: Sorghum-amended microcosm, day 7, replicate 2


text: live

text: Generic

text: Fungi

text: Sorghum-amended microcosm, day 7, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) dried, chipped sorghum-sudangrass biomass (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 14 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Sorghum-amended microcosm, day 14, replicate 1


text: live

text: Generic

text: Fungi

text: Sorghum-amended microcosm, day 14, replicate 2


text: live

text: Generic

text: Fungi

text: Sorghum-amended microcosm, day 14, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) dried, chipped sorghum-sudangrass biomass (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 28 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Sorghum-amended microcosm, day 28, replicate 1


text: live

text: Generic

text: Fungi

text: Sorghum-amended microcosm, day 28, replicate 2


text: live

text: Generic

text: Fungi

text: Sorghum-amended microcosm, day 28, replicate 3


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) flax seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 3 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Flax seed meal-amended microcosm, day 3, replicate 1


text: live

text: Generic

text: Community (genomic) DNA was amplified from each biomass-amended and control soil sample. Fungal ITS amplicons were produced using primers ITS1F (5'-CTTGGTCATTTAGAGGAAGTAA-3') and ITS4 (5'-TCCTCCGCTTATTGATATGC-3'). The amplicons were sequenced using Roche 454 Titanium chemistry, producing reads from the forward direction from primer ITS1F.

text: Fungi

text: Flax seed meal-amended microcosm, day 3, replicate 2


text: live

text: Generic

text: Fungi

text: Flax seed meal-amended microcosm, day 3, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) flax seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 7 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Flax seed meal-amended microcosm, day 7, replicate 1


text: live

text: Generic

text: Fungi

text: Flax seed meal-amended microcosm, day 7, replicate 2


text: live

text: Generic

text: Fungi

text: Flax seed meal-amended microcosm, day 7, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) flax seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 14 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Flax seed meal-amended microcosm, day 14, replicate 1


text: live

text: Generic

text: Fungi

text: Flax seed meal-amended microcosm, day 14, replicate 2


text: live

text: Generic

text: Fungi

text: Flax seed meal-amended microcosm, day 14, replicate 3


text: live

text: Generic

text: This microcosm contained 400 g soil and 2.5% (w/w) flax seed meal (sieved to 1 mm), maintained at 13% (w/w) water content (approximately 40% field capacity), and was incubated in a 1 L mason jar, under aerobic conditions, at 25 *C in a controlled environment incubator. After 28 days' incubation, a subsample was collected and stored at -80C until DNA extraction. Community DNA was extracted from 0.5 g aliquots of each soil sample using a PowerSoil DNA extraction kit (Mo Bio Laboratories, Inc., Carlsbad, CA, USA). Samples were purified with illustra MicroSpin S-400 HR columns (GE Healthcare Bio-Sciences Corp, Piscataway, NJ, USA).

text: Fungi

text: Flax seed meal-amended microcosm, day 28, replicate 1


text: live

text: Generic

text: Fungi

text: Flax seed meal-amended microcosm, day 28, replicate 2


text: Texas A&M University - Soil and Aquatic Microbiology Laboratory

text: live

text: Generic

text: Fungi

text: Flax seed meal-amended microcosm, day 28, replicate 3


control

text: Institute of Plant and Microbial Biology, Academia Sinica, Taiwan

text: live

text: Generic

text: Arabidopsis thaliana

text: arabidopsis root in control condition


iron

text: live

text: Generic

text: Arabidopsis thaliana

text: arabidopsis root in iron deficiency condition


phosphate

text: live

text: Generic

text: Arabidopsis thaliana

text: arabidopsis root in phosphate deficiency condition


Sweet potato transcriptome

text: Sichuan University

text: live

text: Generic

text: Ipomoea batatas

text: De novo Transcriptome Assembly and Digital Gene Expression Analysis of Sweet Potato [Ipomoea batatas (L.) Lam.] Using High-throughput Sequencing


RIPOLL-BACT

text: Catalan Institute for Water Research (ICRA)

text: live

text: Generic

text: Bacteria

text: Bacterial community composition in biofilm and sediments of a river influenced by wastewater treatment plant effluents


YL

text: Sichuan University

text: live

text: Generic

text: Ipomoea batatas

text: Digital Gene Expression Analysis Based on integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.]


ML

text: Sichuan University

text: live

text: Generic

text: Ipomoea batatas


Stem

text: Sichuan University

text: live

text: Generic

text: Ipomoea batatas


text: Jilin Agriculture University

text: live

text: Generic

text: Glycine max

text: microRNAs deep sequencing data of soybean sample (salinity)


FR

text: Sichuan University

text: live

text: Generic

text: Ipomoea batatas


ITR

text: Sichuan University

text: live

text: Generic

text: Ipomoea batatas


name: microRNAs deep sequencing data of soybean sample (mock)

text: Jilin Agriculture University

text: live

text: Generic

text: Glycine max


name: microRNAs deep sequencing data of soybean sample (drought)

text: Jilin Agriculture University

text: live

text: Generic

text: Glycine max


ETR

text: Sichuan University

text: live

text: Generic

text: Ipomoea batatas


name: microRNAs deep sequencing data of soybean sample (alkalinity)

text: Jilin Agriculture University

text: live

text: Generic

text: Glycine max


HTR

text: Sichuan University

text: live

text: Generic

text: Ipomoea batatas


text: Dunnlab at Brown University, Department of Ecology and Evolutionary Biology

text: live

text: Generic

text: RNA extracted with Trizol, RNeasy kit clean up with DNase treatment on column, two rounds of mRNA extraction with Dynabeads, NEB mRNA-seq sample prep kit.

text: Gadila tolmiei

text: Illumina Gadila tolmiei transcriptome


text: live

text: Generic

text: mRNA extracted from tissue with the NEB extraction kit. The sample was prepared with the mRNA-seq sample prep kit from NEB.

text: Neomenia megatrapezata

text: Illumina Neomenia megatrapezata transcriptome


text: live

text: Generic

text: mRNA extracted from tissue with the NEB extraction kit. The sample was prepared with the mRNA-seq sample prep kit from NEB. The sample was collected from Greenland.

text: Neomeniomorpha sp. 1 SS-2011

text: Illumina Neomeniomorpha sp. 1 SS-2011 transcriptome


text: University of Nebraska - Non Human Primate Genomics Center

text: live

text: Generic

text: RNA was extracted from a Chinese origin rhesus macaque in the laboratory of Dr. Howard Fox. Sequencing was performed at Illumina.

characteristic: individual id

text: Macaca mulatta

text: thymus

characteristic: tissue type

text: Rhesus macaque Animal Number (001T-NHP), Thymus


SoilFractionBacteria

characteristic: External Id

text: Medical Biofilm Research Institute

characteristic: INSDC center name

text: live

text: Generic

text: Bacteria

text: Pyrosequencing and mid-infrared spectroscopy techniques reveal distinct aggregate stratification of soil bacterial communities and organic matter composition


text: College of Veterinary Medicine, Huazhong Agricultural University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: dev-stage

text: Anas platyrhynchos

text: male

characteristic: sex

text: Cherry Valley

text: liver

characteristic: tissue-type

text: Duck liver PCR-based subtractive hybridization cDNA library

text: pGEM-T Easy

characteristic: vector


Thymus RNA-seq

text: The Walter and Eliza Hall Institute of Medical Research

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Bat unstimulated thymus and bone marrow, and mitogen stimulated spleen/whole blood/lymph node

text: Pteropus alecto

characteristic: organism


Pooled RNA-seq

text: live

text: Generic

text: Pooled total RNA obtained from mitogen-stimulated spleen, white blood cells and lymph node and unstimulated thymus and bone marrow obtained from one pregnant female and one adult male flying fox. Cells were stimulated with the mitogens lipopolysaccharide (LPS) and Ionomycin.

characteristic: description

text: Pteropus alecto

text: Pteropus alecto immune tissue RNA-seq

characteristic: title


text: University of Basel

text: live

text: Generic

text: Illumina sequencing of Gasterosteus aculeatus

text: Gasterosteus aculeatus aculeatus


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces of 6 pigs that were fed non-medicated feed.

text: Viruses

text: Non-medicated day 0 swine fecal phage metagenome


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces of 6 pigs just prior to the inclusion of in-feed subtherapeutic carbadox.

text: Viruses

text: Day 0 swine fecal phage metagenome of swine prior to subtherapeutic carbadox treatment


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 non-medicated pigs 14 days after the start of the study. Because of our expermental design, this control metagenome also corresponds to day 0 of the therapeutic carbadox experiment.

text: Viruses

text: Swine fecal phage metagenome of control swine 14 days after start of study


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs that were fed subtherapeutic carbadox for 14 days.

text: Viruses

text: Phage metagenome 14 days after in-feed subtherapeutic carbadox


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs that were fed non-medicated food just prior to starting in-feed therapeutic levels of carbadox.

text: Viruses

text: Swine fecal phages isolated just prior to therapeutic carbadox treatment


Nonmed day17

text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs that were fed non-medicated feed. This is technically the 17th day of sampling these pigs, but this sampling date also corresponds to the phage metagenome on day 3 of therapeutic carbadox treatment.

text: Viruses

text: Non-medicated swine fecal phage metagenome corresponding to day 3 of therapeutic carbadox


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs after three days of in-feed therapeutic levels of carbadox. The corresponding control metagenome is NonmedDay17.

text: Viruses

text: Swine fecal phage metagenome after 3 days of in-feed therapeutic carbadox


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs that were fed normal, non-medicated diets (control). This sample is 42 days after the first sample and corresponds to day 28 of the therapeutic carbadox experiment.

text: Viruses

text: Swine fecal phage metagenome from nonmedicated swine 42 days after first sample


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs that were fed therapeutic levels of carbadox for 28 days. The companion control (nonmedicated) metagenome is NonmedDay42.

text: Viruses

text: Swine fecal phage metagenome 28 days after continued in-feed therapeutic carbadox


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs that were fed a normal, non-medicated diet. This metagenome is the corresponding control (non-medicated) metagenome for ASP250Day0.

text: Viruses

text: Swine fecal phage metagenome from non-medicated animals 56 days after the first sample


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs just prior to adding ASP250 to their diets. The control (non-medicated) metagenome corresponding to this one is NonmedDay56.

text: Viruses

text: Swine fecal phage metagenome just prior to in-feed ASP250 administration


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs that were fed normal, non-medicated diets. This is the control metagenome corresponding to the ASP250 day 8 metagenome.

text: Viruses

text: Swine fecal phage metagenome of non-medicated animals 64 days after first sample


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs that were continuously fed ASP250 for 8 days. The control (non-medicated) phage metagenome corresponding to this one is NonmedDay64.

text: Viruses

text: Swine fecal phage metagenome after 8 days of in-feed ASP250 antibiotics


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs fed normal, non-medicated diet for 70 days. This is the control phage metagenome corresponding to the ASP250Day14 phage metagenome.

text: Viruses

text: Swine fecal phage metagenome fed non-medicated diet for 70 days


text: USDA/ARS/NADC/FSEPRU

text: live

text: Generic

text: Phages were isolated from pooled feces from 6 pigs that were continuously fed ASP250 in their diets for 14 days. The control (non-medicated) metagenome corresponding to this one is NonmedDay70.

text: Viruses

text: Swine fecal phage metagenome after 14 days of continuous in-feed ASP250


text: Dunnlab at Brown University, Department of Ecology and Evolutionary Biology

text: live

text: Generic

text: Total RNA was extracted with Trizol, then RNeasy on column DNase1. Total RNA was sent to Roche and they prepared the sample (extracted the mRNA from total RNA and prepared the mRNA for 454 sequencing).

text: Littorina littorea

text: 454 Littorina littorea transcriptome


text: live

text: Generic

text: Octopus vulgaris

text: Illumina Octopus vulgaris transcriptome


text: Waksman Institute, Rutgers University

text: live

text: Generic

text: cDNAs were reversed transcribed from polyA-selected mRNA from C. brenneri then ligated into BsrG I cut pDONR222 using the Invitrogen Gateway cloning system. The authors gratefully acknowledge the Genome Sequencing Center at The Washington University School of Medicine for providing us with their Caenorhabditis brenneri cDNA library (CPAD1).

text: Mixed stages

text: E. coli DH5a

characteristic: lab-host

text: Whole animal

characteristic: organ

text: Caenorhabditis brenneri

text: BsrGI

text: Washington University C. brenneri cDNA library

text: Plasmid


characteristic: External Id

text: Toho University

characteristic: INSDC center name

text: live

text: Generic

text: Japan: Okinawa, Isigaki-Is., Omoto

characteristic: country

text: Ulva limnetica

characteristic: specimen-voucher

text: whole cell

text: Ulva limnetica whole cell


text: ARS, USDA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Total RNA samples of individual castes were extracted separately using TRIzol plus RNA purification kit (Invitrogen, Carlsbad, CA, USA) with addition of DAase treatment. RNA samples were used for cDNA synthesis using SMART RACE cDNA Amplification kit (Clontech, Mountain View, CA, USA). Equal amounts of RNA from individual castes were mixed and the mixture used for double-stranded DNA synthesis using the SMART approach (Zhu et al., 2001). Equalization of transcript abundance in cDNA population was performed using duplex-specific nuclease (DSN)-based normalization technology (Evrogen; www.evrogen.com). Normalized cDNAs were ligated into pAL17.3 and used for E. coli transformation and expressed sequence tag (EST) library preparation.

text: worker, soldier, nymph, male alates, female alates

characteristic: dev-stage

text: Escherichia coli

text: Coptotermes formosanus

text: SfiI

text: SfiI

text: mixed

characteristic: sex

text: whole body

text: Termite Coptotermes formosanus metatranscriptomic library

text: plasmid


text: Australian National University

text: live

characteristic: INSDC status

text: Generic

text: Suppressive subtractive hybridization (Clontech PCR-Select) was carried out according to manufacturer's instructions using mRNA prepared from pre-settlement and post-settlement stages of Acropora milleopra

text: Acropora millepora

text: hermaphrodite

text: Acropora millepora SSH library

text: plasmid

text: pGEMTeasy

characteristic: vector


Ibfl

text: Sichuan University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Ipomoea batatas

text: Floral transcriptome of sweet potato


text: University of Tokyo

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

characteristic: organism


Kimchi starter

text: School of Biological Sciences, Chung-Ang University

text: live

text: Generic

text: food metagenome

text: Effects of Leuconostoc mesenteroides starter culture on microbial communities and metabolites during kimchi fermentation

characteristic: title


Macrobrachium rosenbergii

text: University of Malaya, Malaysia

text: live

text: Generic

text: Macrobrachium rosenbergii

text: gill

characteristic: tissue

text: Malaysian giant freshwater prawn, Macrobrachium rosenbergii


characteristic: External Id

text: Broad Institute

text: live

text: Generic

characteristic: isolation source

text: Mus musculus

characteristic: sample name

text: Mouse

characteristic: strain

text: Generic sample from Mus musculus


name: 20238.7190.Genomic DNA.pooled gDNA sample

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Puccinia striiformis f. sp. tritici PST-78

text: pooled gDNA sample

characteristic: sample id

text: Genomic DNA

characteristic: sample type

text: wheat stripe rust 2K041-Yr9 Genomic DNA sample pooled gDNA sample


name: PRJNA28331.Veillonella atypica UC1 FAA A

text: Broad Institute

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Veillonella atypica UC1_FAA_A

text: Veillonella atypica UC1 FAA A

text: UC1 FAA A

text: Generic sample from Veillonella atypica UC1_FAA_A


text: Bartel, Whitehead Institute for Biomedical Research

characteristic: INSDC secondary accession

text: live

text: Generic

text: WT

characteristic: genotype/variation

text: Saccharomyces cerevisiae

text: log-phase liquid culture, WT


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Saccharomyces cerevisiae

text: log-phase liquid culture, AGO1


text: live

text: Generic

characteristic: SRA accession

text: Saccharomyces cerevisiae

characteristic: organism

text: log-phase liquid culture, DCR1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: log-phase liquid culture, AGO1DCR1

characteristic: title


characteristic: External Id

text: Lieb, Biology, University of North Carolina at Chapel Hill

text: live

text: Generic

text: AB9050 H3K36me3

characteristic: chip antibody

text: Abcam

characteristic: chip antibody supplier

text: Caenorhabditis elegans

text: whole body

characteristic: stage

text: whole body

characteristic: tissue


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Caenorhabditis elegans

text: Control sample from L3 stage N2 worms, whole body

characteristic: strain

text: whole body

text: seq-NA_N2_L3_1_E77 [input DNA]


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

text: Goat polyclonal

characteristic: antibody antibody description

characteristic: antibody target description

text: (None)

characteristic: antibody vendor id

text: Kevin White

characteristic: antibody vendor name

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: This data represents a control being compared to experiments using antibody eGFP-NR4A1

characteristic: control description

characteristic: control id

text: ChipSeq

characteristic: data type

text: ChIP-Seq

characteristic: data type description

text: UChicago

characteristic: lab

text: White - University of Chicago

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: UChicago_ChipSeq_K562_eGFP-NR4A1_Control_eGFP-NR4A1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: eGFP-JunB

characteristic: antibody

text: Goat polyclonal

characteristic: antibody antibody description

text: JunB

characteristic: antibody target description

text: (None)

characteristic: antibody vendor id

text: Kevin White

characteristic: antibody vendor name

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: This data represents a control being compared to experiments using antibody eGFP-JunB

text: ChipSeq

text: ChIP-Seq

text: UChicago

text: White - University of Chicago

text: Homo sapiens

characteristic: organism

text: tier 1

text: UChicago_ChipSeq_K562_eGFP-JunB_Control_eGFP-JunB

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: eGFP-JunD

text: Goat polyclonal

text: JunD

text: (None)

text: Kevin White

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: This data represents a control being compared to experiments using antibody eGFP-JunD

characteristic: control description

characteristic: control id

text: ChipSeq

characteristic: data type

text: ChIP-Seq

characteristic: data type description

text: UChicago

characteristic: lab

text: White - University of Chicago

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: UChicago_ChipSeq_K562_eGFP-JunD_Control_eGFP-JunD


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat polyclonal

characteristic: antibody antibody description

characteristic: antibody target description

text: (None)

characteristic: antibody vendor id

text: Kevin White

characteristic: antibody vendor name

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: This data represents a control being compared to experiments using antibody eGFP-HDAC8

text: ChipSeq

text: ChIP-Seq

text: UChicago

text: White - University of Chicago

text: Homo sapiens

characteristic: organism

text: tier 1

text: UChicago_ChipSeq_K562_eGFP-HDAC8_Control_eGFP-HDAC8

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Goat polyclonal

text: (None)

text: Kevin White

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: This data represents a control being compared to experiments using antibody eGFP-GATA2

characteristic: control description

characteristic: control id

text: ChipSeq

characteristic: data type

text: ChIP-Seq

characteristic: data type description

text: UChicago

characteristic: lab

text: White - University of Chicago

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: UChicago_ChipSeq_K562_eGFP-GATA2_Control_eGFP-GATA2


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: ChipSeq

text: ChIP-Seq

text: UChicago

text: White - University of Chicago

text: Homo sapiens

characteristic: organism

text: tier 1

text: UChicago_ChipSeq_K562_Input_Control_eGFP-JunD

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Input

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: control id

text: ChipSeq

characteristic: data type

text: ChIP-Seq

characteristic: data type description

text: UChicago

characteristic: lab

text: White - University of Chicago

text: Homo sapiens

text: tier 1

text: UChicago_ChipSeq_K562_Input_Control_eGFP-JunB


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: eGFP-FOS

characteristic: antibody

text: Goat polyclonal

characteristic: antibody antibody description

text: Fos

characteristic: antibody target description

text: (None)

characteristic: antibody vendor id

text: Kevin White

characteristic: antibody vendor name

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: This data represents a control being compared to experiments using antibody eGFP-FOS

text: ChipSeq

text: ChIP-Seq

text: UChicago

text: White - University of Chicago

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: UChicago_ChipSeq_K562_eGFP-FOS_Control_eGFP-FOS


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Input

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: control id

text: ChipSeq

characteristic: data type

text: ChIP-Seq

characteristic: data type description

text: UChicago

characteristic: lab

text: White - University of Chicago

text: Homo sapiens

characteristic: organism

text: tier 1

text: UChicago_ChipSeq_K562_Input_Control_eGFP-NR4A1

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: ChipSeq

text: ChIP-Seq

text: UChicago

text: White - University of Chicago

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: UChicago_ChipSeq_K562_Input_Control_eGFP-FOS


text: ENCODE DCC

text: live

text: Generic

text: Input

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: control id

text: ChipSeq

characteristic: data type

text: ChIP-Seq

characteristic: data type description

text: UChicago

text: White - University of Chicago

text: Homo sapiens

text: tier 1

text: UChicago_ChipSeq_K562_Input_Control_eGFP-HDAC8


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: ChipSeq

text: ChIP-Seq

text: UChicago

characteristic: lab

text: White - University of Chicago

text: Homo sapiens

characteristic: organism

text: tier 1

text: UChicago_ChipSeq_K562_Input_Control_eGFP-GATA2

characteristic: title


text: University of Birmingham

text: live

text: Generic

characteristic: cell number

characteristic: cell type

text: Homo sapiens

text: Th1 cells


text: University of Birmingham

text: live

text: Generic

text: Homo sapiens

text: Th2 cells


text: University of Birmingham

text: live

text: Generic

text: T-bet; Antibody vendor: Lab produced (Szabo et al., Nature 2000).

characteristic: chip antibody

text: Homo sapiens

text: Th1 cells


text: University of Birmingham

text: live

text: Generic

text: GATA-3; Antibody vendor: Santa Cruz; Antibody catalog number:sc-22206; Antibody lot number: F1306

text: Homo sapiens

text: Th1 cells


text: University of Birmingham

text: live

text: Generic

text: Homo sapiens

text: Th2 cells


text: University of Toronto

text: live

text: Generic

text: wildtype

characteristic: genotype/variation

text: Mus musculus

text: Tc0 (wildtype) mouse brain

characteristic: strain

text: brain

characteristic: tissue

text: Tc0 Mouse Brain


characteristic: External Id

text: University of Toronto

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: wildtype

text: Mus musculus

text: Tc0 (wildtype) mouse liver

text: liver

text: Tc0 Mouse Liver


text: University of Toronto

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: aneuploid

text: Mus musculus

text: Tc1 mouse brain

text: brain

text: Tc1 Mouse Brain


text: University of Toronto

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: aneuploid

text: Mus musculus

text: Tc1 mouse liver

text: liver

text: Tc1 Mouse Liver


text: University of Toronto

text: live

text: Generic

text: wildtype

text: Homo sapiens

characteristic: organism

text: Wildtype human brain

text: brain

text: Human Brain


text: University of Toronto

text: live

text: Generic

text: wildtype

text: Homo sapiens

text: Wildtype human liver

text: brain

text: Human Liver

characteristic: title


name: Caenorhabditis elegans N2 early embryo EE_50-30 RNA library

text: University of Washington Genome Sciences

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-30 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 30 minutes. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-30 Local library name: N2_EE_50-30 Quality values are ASCII encoded Phred + 33. Flowcell 62UHPAAXX was processed with GAPipeline1.8 and is 76bp. Flowcell B007UABXX was processed with GAPipeline1.7 and is 100bp.

characteristic: description

text: Caenorhabditis elegans


text: Boffelli, Center for Genetics, CHORI

text: live

text: Generic

text: young adult

characteristic: age

text: neutrophil

characteristic: cell type

text: male

characteristic: gender

text: Homo sapiens

text: whole blood


text: Boffelli, Center for Genetics, CHORI

text: live

text: Generic

text: young adult

text: neutrophil

text: male

text: Pan troglodytes

text: whole blood


text: Bioinformatics and Genomics, Bioinformatics, Immunology Frontier Research Center

text: live

text: Generic

text: Adherent peritoneal exudate macrophages

text: male

text: Mus musculus

text: RNA-seq of IL-10 treated macrophages

characteristic: strain

text: RNA-seq of IL-10 treated macrophages


text: live

text: Generic

text: Adherent peritoneal exudate macrophages

text: male

text: Mus musculus

text: RNA-seq of Untreated macrophages

text: RNA-seq of Untreated macrophages


text: Broad Institute

text: live

text: Generic

characteristic: bi gssr sample id

text: broadinstitute.org:bsp.prod.sample:1MXHK

characteristic: bi gssr sample lsid

text: Genomic DNA

characteristic: bi gssr sample type

text: Plasmodium vivax Mauritania I

text: Mauritania I

characteristic: sample id

text: not determined

characteristic: sex

text: Mauritania I

text: Plasmodium vivax Mauritania I Genomic DNA sample 79063.0


PRJNA67237.Mauritania I

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: blood

characteristic: isolation source

text: Plasmodium vivax Mauritania I

text: Mauritania I

characteristic: sample name

text: Mauritania I

text: Generic sample from Plasmodium vivax Mauritania I


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Adherent peritoneal exudate macrophages

text: anti-STAT3 (Santa Cruz sc-482)

characteristic: chip antibody

text: male

text: Mus musculus

characteristic: organism

text: ChIP in untreated macrophages against STAT3

characteristic: title


text: live

text: Generic

text: Adherent peritoneal exudate macrophages

characteristic: cell type

text: anti-STAT3 (Santa Cruz sc-482)

text: male

characteristic: gender

text: Mus musculus

text: ChIP in IL-10 treated (4 hours) macrophages against STAT3

characteristic: strain


characteristic: External Id

text: live

text: Generic

text: Adherent peritoneal exudate macrophages

text: male

text: Mus musculus

text: Input chromatin from untreated macrophages


characteristic: INSDC center name

text: live

text: Generic

text: Adherent peritoneal exudate macrophages

text: male

text: Mus musculus

text: Input chromatin from IL-10 treated (4 hours) macrophages


text: Clark Laboratory, Department of Biology, University of Utah

characteristic: INSDC first public

text: live

text: Generic

text: adult

characteristic: developmental stage

text: males and females

text: bean

characteristic: host

text: Tetranychus urticae

text: adult

text: London

characteristic: technical replicate


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: embryo

text: males and females

text: bean

text: Tetranychus urticae

text: embryo

text: London


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: larvae

text: males and females

text: bean

text: Tetranychus urticae

text: larvae

text: London


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: nymph

text: males and females

text: bean

text: Tetranychus urticae

text: nymph

text: London


text: National Cancer Institute

text: live

text: Generic

text: Cell line derived from Burkitt's lymphoma

characteristic: cell line

text: CTCF

characteristic: chip antibody

text: Millipore

characteristic: chip antibody vendor

text: Homo sapiens

characteristic: organism

text: Multiple

characteristic: passage

text: B cells


characteristic: External Id

text: National Cancer Institute

text: live

text: Generic

text: Normal Rabbit IgG

text: Cell signaling Technology

text: Homo sapiens

text: Multiple

text: B cells

characteristic: title


text: BC Cancer Agency Michael Smith Genome Sciences Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Liver

characteristic: TISSUE

text: 2.3x10e6 FACS sorted E14.5 embryonic liver hepatoblast cells (80-90% purity) in 3.2ml of trizol

characteristic: description

text: Mus musculus

text: Mixed

characteristic: sex

text: Wild type

characteristic: strain

text: Generic sample from Mus musculus


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Heart-Atrioventricular-Cushions

text: 85 AV cushions manually dissected from C57BL/6J mice in 500ul of Trizol

characteristic: host

text: Mus musculus

text: Mixed

text: Generic sample from Mus musculus


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Heart-Atrioventricular Cushions

text: E11.5 AV cushions from 104 embryos manually dissected from C57BL/6J mice in 500ul of Trizol

text: Mus musculus

text: Mixed

text: Generic sample from Mus musculus


text: live

text: Generic

text: Dorsal aorta

text: E11.25 Dorsal aorta (VEC+, 67000) from C57BL/6J in Trizol.

text: Mus musculus

characteristic: organism

text: Mixed

text: Generic sample from Mus musculus


text: live

text: Generic

text: Umbilical and vitelline artery

text: E14.5 umbilical and vitelline artery (VEC+, 162000) from C57BL/6J in Trizol.

text: Mus musculus

text: Mixed

text: Generic sample from Mus musculus


text: live

text: Generic

text: Endoderm-Definitive

text: E8.5 isolated definitive endoderm in Trizol

text: Mus musculus

text: Mixed

text: Generic sample from Mus musculus


text: Yale University

text: live

text: Generic

text: anti-Myc EZview affinity gel (Sigma)

characteristic: antibody

text: Sigma

characteristic: antibody manufacturer

text: Saccharomyces cerevisiae

text: Yeast cell

text: W303 Mif2-9xMyc-KanMX4

text: Yeast Mif2 ChIP-Seq


characteristic: External Id

text: Yale University

text: live

text: Generic

text: anti-Myc EZview affinity gel (Sigma)

text: Sigma

text: Saccharomyces cerevisiae

text: Yeast cell

text: W303 Ndc10-9xMyc-KanMX4

text: Yeast Ndc10 ChIP-Seq

characteristic: title


text: Yale University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: anti-Myc EZview affinity gel (Sigma)

text: Sigma

text: Saccharomyces cerevisiae

text: Yeast cell

text: W303 Ndc80-9xMyc-KanMX4

text: Yeast Ndc80 ChIP-Seq


text: Yale University

text: live

text: Generic

text: anti-HA EZview affinity gel (Sigma)

text: Sigma

text: Saccharomyces cerevisiae

text: Yeast cell

text: W303 Pgal1-Cse4-3xHA-KanMX4 (internal tag)

text: Yeast Cse4 OP ChIP-Seq


text: Yale University

text: live

text: Generic

text: anti-Myc EZview affinity gel (Sigma)

text: Sigma

text: Saccharomyces cerevisiae

text: Yeast cell

text: W303 Mif2-9xMyc-KanMX4 Pgal1-Cse4

text: Yeast Mif2 OP ChIP-Seq


text: Yale University

text: live

text: Generic

text: anti-Myc EZview affinity gel (Sigma)

text: Sigma

text: Saccharomyces cerevisiae

text: Yeast cell

text: W303 Ndc10-9xMyc-KanMX4 Pgal1-Cse4

text: Yeast Ndc10 OP ChIP-Seq


text: Yale University

text: live

text: Generic

text: anti-Myc EZview affinity gel (Sigma)

text: Sigma

text: Saccharomyces cerevisiae

text: Yeast cell

text: W303 Ndc80-9xMyc-KanMX4 Pgal1-Cse4

text: Yeast Ndc80 OP ChIP-Seq


text: Yale University

text: live

text: Generic

text: anti-Myc EZview affinity gel (Sigma)

text: Sigma

text: Saccharomyces cerevisiae

text: Yeast cell

text: Yeast Untagged Myc Control ChIP Seq


text: Yale University

text: live

text: Generic

text: anti-Myc EZview affinity gel (Sigma)

text: Sigma

text: Saccharomyces cerevisiae

text: Yeast cell

text: W303 Pgal1-Cse4

text: Yeast Untagged Myc Control OP ChIP Seq


text: Yale University

text: live

text: Generic

text: anti-HA EZview affinity gel (Sigma)

text: Sigma

text: Saccharomyces cerevisiae

text: Yeast cell

text: W303 Pgal1-Cse4

text: Yeast Untagged HA Control OP ChIP Seq


text: Yale University

text: live

text: Generic

text: anti-HA EZview affinity gel (Sigma)

text: Sigma

text: Saccharomyces cerevisiae

text: Yeast cell

text: W303 Pgal1-Cse4-3xHA-KanMX4 (internal tag) scm3::HphMX4

text: Yeast Cse4 scm3 ChIP-Seq


text: Yale University

text: live

text: Generic

text: anti-RNA Polymerase II mouse monoclonal antibody, clone 8WG16 (Covance, MMS-126R)

text: Covance

text: Saccharomyces cerevisiae

text: Yeast cell

text: Yeast PolII ChIP-Seq


text: Yale University

text: live

text: Generic

text: Saccharomyces cerevisiae

text: input sonicated DNA

characteristic: sample type

text: Yeast cell

text: Yeast Sono-Seq


text: University of Iowa

text: live

text: Generic

text: LNCaP

characteristic: cell line background

text: prostate adenocarcinoma cells

characteristic: cell type

text: Anti-Androgen Receptor (AR)

characteristic: chip antibody

text: BD Biosciences

characteristic: chip antibody vendor

text: wild type

characteristic: genotype/variation

text: Homo sapiens

text: LNCaP


text: University of Iowa

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: LNCaP

text: prostate adenocarcinoma cells

text: Anti-Androgen Receptor (AR)

text: BD Biosciences

text: p53 knockdown

text: Homo sapiens

text: LNsip53-AR ChIPSeq


text: Washington University, Genome Sequencing Center

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dictyocaulus viviparus

characteristic: sample id

text: cdna

text: female

characteristic: stage

text: Dictyocaulus viviparus stage female


characteristic: External Id

text: KAIST

text: live

text: Generic

text: siRNF20-transfected NCCIT

characteristic: cell line

text: embryonic carcinoma cells

text: Homo sapiens

characteristic: organism

text: siRNF20-transfected NCCIT cells, mRNA

characteristic: title


text: Harvard University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit anti EBNA2

characteristic: antibody

text: EBV immotalized lymphocyte

text: Homo sapiens

text: IB4 cells

text: EBNA2 ChIP-seq 1


text: Harvard University

text: live

text: Generic

text: Rabbit anti EBNA2

text: EBV immotalized lymphocyte

characteristic: cell type

text: Homo sapiens

text: IB4 cells

text: EBNA2 ChIP-seq 2


text: Harvard University

text: live

text: Generic

text: Rabbit anti RBPJ

text: EBV immotalized lymphocyte

text: Homo sapiens

text: IB4 cells

text: RBPJ ChIP-seq 1


text: Harvard University

text: live

text: Generic

text: Rabbit anti RBPJ

text: EBV immotalized lymphocyte

text: Homo sapiens

text: IB4 cells

text: RBPJ ChIP-seq 2


text: Harvard University

text: live

text: Generic

text: EBV immotalized lymphocyte

text: Homo sapiens

text: IB4 cells

text: Input 1


text: Harvard University

text: live

text: Generic

text: EBV immotalized lymphocyte

text: Homo sapiens

text: IB4 cells

text: Input 2


text: J. Craig Venter Institute

text: live

text: Generic

text: Random size-selected (20 KB) DNA fragments of Aspergillus fumigatus Af10 genomic DNA

characteristic: description

text: Aspergillus fumigatus Af10

text: Generic sample from Aspergillus fumigatus Af10


text: China Agricultural University

characteristic: INSDC last update

text: live

text: Generic

text: Specific pathogen free White Leghorn (BWEL)

characteristic: breed

text: 46 days post infection

characteristic: development stage

text: Gallus gallus

text: MDV-infected tumorous spleen

text: Spleen

characteristic: tissue-type

text: microRNAs from MDV-infected tumorous spleen


text: China Agricultural University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 46 days post infection

text: Gallus gallus

text: MD lymphoma from liver

text: Lymphoma from liver

text: microRNAs from MD lymphoma from liver


characteristic: External Id

text: China Agricultural University

text: live

text: Generic

characteristic: SRA accession

text: 40 days post infection

text: Gallus gallus

text: non-infected spleen

text: Spleen

text: microRNAs from non-infected spleen


text: China Agricultural University

text: live

text: Generic

text: 40 days post infection

text: Gallus gallus

characteristic: organism

text: non-infected lymphocytes

text: Lymphocytes of peripheral blood

text: microRNAs from non-infected lymphocytes


text: Bartel, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: WT

characteristic: genotype/variation

text: Saccharomyces cerevisiae

text: log-phase liquid culture, WT

characteristic: strain

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Saccharomyces cerevisiae

text: log-phase liquid culture, AGO1DCR1


text: Shaun Mahony, Biochemistry & Molecular Biology, Penn State University

text: live

text: Generic

text: Ainv15 (ATCC SCRC-1029) with Dox-inducible Ngn2.Isl1.Lhx3-V5 construct

characteristic: cell line

text: induced motor neurons (Day4 iNIL differentiation)

characteristic: cell stage

text: +Dox 48hrs

characteristic: cell treatment

text: anti-V5 (Abcam, ab15828, Lot: 103968)

characteristic: chip antibody

text: Mus musculus

text: ChIP-seq analysis of induced V5-tagged Lhx3 (iLhx3-V5) in iNIL3 induced motor neurons (Day 4)


characteristic: INSDC last update

text: live

text: Generic

text: +Dox 48hrs

text: anti-Isl1/2 (gift from Dr. T. Jessell)

text: Mus musculus

text: ChIP-seq analysis of Isl1/2 in iNIL3 induced motor neurons (Day 4)


characteristic: INSDC secondary accession

text: live

text: Generic

text: Third stage larvae (L3) incubated at 37C in tissue culture medium (RPMI) with host-like stimulus, feeding. Stimulus is canine serum filtrate and S-methylglutathione

characteristic: life cycle stage information

text: Ancylostoma caninum

characteristic: sample id

text: rna

characteristic: sample type

text: L3 (Activated)

characteristic: stage

text: Baltimore

text: Ancylostoma caninum stage L3(activated) strain Baltimore


characteristic: External Id

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dictyocaulus viviparus

text: cdna

text: L1 L2

text: Dictyocaulus viviparus stage L1 L2


characteristic: INSDC center name

text: live

text: Generic

text: egg

text: Dictyocaulus viviparus

characteristic: organism

text: mrna

text: eggs

text: Dictyocaulus viviparus stage eggs

characteristic: title


characteristic: INSDC first public

text: live

text: Generic

text: L2 larvae

text: Oesophagostomum dentatum

text: rna

text: Oesophagostomum dentatum stage L2


text: Stanford University

text: live

text: Generic

text: TCF7 goat polyclonal antibody TCF1(H18)

characteristic: antibody

characteristic: catalog

text: Lin-SCA+CD34+ cells

characteristic: cell type

text: Mus musculus

text: Illumina; single-end;35bp reads

characteristic: sequence type

text: EML cells

text: Santa Cruz Biotechnology

characteristic: vendor


text: Stanford University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: anti-AML(RUNX1) rabbit polyclonal antibody

text: Lin-SCA+CD34+ cells

text: Mus musculus

text: Illumina; single-end;35bp reads

text: EML cells

text: CalBiochem


text: Stanford University

text: live

text: Generic

text: Lin-SCA+CD34+ cells

text: Mus musculus

text: Illumina; single-end;35bp reads

text: EML cells

text: input DNA for TCF7


text: Stanford University

text: live

text: Generic

text: Lin-SCA+CD34+ cells

text: Mus musculus

text: Illumina; single-end;35bp reads

text: EML cells

text: input DNA for RUNX1


name: Caenorhabditis elegans N2 early embryo EE_50-0 RNA library

text: University of Washington Genome Sciences

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-0 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 0 minutes. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-0 Local library name: N2_EE_50-0 Quality values are ASCII encoded Phred + 33. Flowcell 62UHPAAXX was processed with GAPipeline 1.8 and is 76bp. Flowcell B007UABXX was processed with GAPipeline 1.7 and is 100bp.

characteristic: description

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-90 RNA library

characteristic: External Id

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-90 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 90 minutes. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-90 Local library name: N2_EE_50-90 Quality values are ASCII encoded Phred + 33. Flowcell 62UHPAAXX was processed with GAPipeline1.8 and is 76bp. Flowcell B007UABXX was processed with GAPipeline1.7 and is 100bp. Flowcell B00TWABXX was processed with GAPipeline1.12 and is 100bp.

text: Caenorhabditis elegans


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Female

characteristic: host sex

text: Geobacter sp. ORNL_6EZ5-Gt_5_Pl1-57

characteristic: sample name

text: Generic sample from Geobacter sp. ORNL_6EZ5-Gt_5_Pl1-57


text: BAYLOR COLLEGE OF MEDICINE

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: castration resistant prostate cancer

characteristic: disease state

text: Homo sapiens

text: bone marrow

text: bone metastatic tumor

characteristic: tissue

text: Prostate cancer bone metastases bone_marrow_nugen1

text: metastatic

characteristic: tumor stage


text: BAYLOR COLLEGE OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: castration resistant prostate cancer

text: Homo sapiens

characteristic: organism

text: bone marrow

text: bone metastatic tumor

text: Prostate cancer bone metastases bone_marrow_nugen2

characteristic: title

text: metastatic


text: BAYLOR COLLEGE OF MEDICINE

characteristic: INSDC last update

text: live

text: Generic

text: castration resistant prostate cancer

text: Homo sapiens

text: bone marrow

text: bone metastatic tumor

text: Prostate cancer bone metastases bone_marrow_nugen3

text: metastatic


text: BAYLOR COLLEGE OF MEDICINE

characteristic: INSDC secondary accession

text: live

text: Generic

text: castration resistant prostate cancer

text: Homo sapiens

text: bone marrow

text: bone metastatic tumor

text: Prostate cancer bone metastases bone_marrow_nugen4

text: metastatic


text: BAYLOR COLLEGE OF MEDICINE

text: live

text: Generic

text: castration resistant prostate cancer

text: Homo sapiens

text: bone marrow

text: bone metastatic tumor

text: Prostate cancer bone metastases bone_marrow_nugen5

text: metastatic


text: BAYLOR COLLEGE OF MEDICINE

text: live

text: Generic

text: castration resistant prostate cancer

text: Homo sapiens

text: bone marrow

text: bone metastatic tumor

text: Prostate cancer bone metastases bone_marrow_nugen6

text: metastatic


text: BAYLOR COLLEGE OF MEDICINE

text: live

text: Generic

text: castration resistant prostate cancer

text: Homo sapiens

text: bone marrow

text: bone metastatic tumor

text: Prostate cancer bone metastases bone_marrow_nugen7

text: metastatic


text: BAYLOR COLLEGE OF MEDICINE

text: live

text: Generic

text: castration resistant prostate cancer

text: Homo sapiens

text: bone marrow

text: bone metastatic tumor

text: Prostate cancer bone metastases bone_marrow_nugen8

text: metastatic


text: J. Craig Venter Institute

text: live

text: Generic

text: Random size-selected (8 KB) DNA fragments of Aspergillus fumigatus Af10 genomic DNA

characteristic: description

text: Aspergillus fumigatus Af10

text: Generic sample from Aspergillus fumigatus Af10


PRJNA67065.Brazil I

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Blood

characteristic: isolation source

text: Plasmodium vivax Brazil I

text: Brazil I

text: Brazil I

characteristic: strain

text: Generic sample from Plasmodium vivax Brazil I


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: bi gssr sample id

text: broadinstitute.org:bsp.prod.sample:1MXHL

characteristic: bi gssr sample lsid

text: Genomic DNA

characteristic: bi gssr sample type

text: Plasmodium vivax Brazil I

text: Brazil I

characteristic: sample id

text: Other

characteristic: sex

text: Brazil I

text: Plasmodium vivax Brazil I Genomic DNA sample 79064.0


text: Clark Laboratory, Department of Biology, University of Utah

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: biological replicate

text: mixed

characteristic: developmental stage

text: bean

characteristic: host

text: Tetranychus urticae

text: mixed developmental stages, bean

text: London


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: mixed

text: A. thaliana Kondara

text: Tetranychus urticae

characteristic: organism

text: mixed developmental stages, Kondara

text: London

characteristic: title


characteristic: External Id

text: live

characteristic: INSDC status

text: Generic

text: mixed

text: A. thaliana Bla-2

text: Tetranychus urticae

text: mixed developmental stages, Bla-2

text: London

characteristic: strain


text: National Cancer Institute

text: live

text: Generic

text: Cell line derived from Burkitt's lymphoma

characteristic: cell line

text: Homo sapiens

text: Multiple

characteristic: passage

text: B cells

text: BJAB


text: National Cancer Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: Multiple

text: B cells


text: Systems Biology Division, ZCNI, ZheJiang University

text: live

text: Generic

characteristic: NCBI submission package

text: 5-methylcytidine antibody

characteristic: antibody

text: ovarian cancer cell line

characteristic: cell type

text: Homo sapiens

text: cisplatin sensitive cell line

text: cisplatin_sensitive_cell line_MDB-Seq


text: live

text: Generic

characteristic: SRA accession

text: 5-methylcytidine antibody

text: ovarian cancer cell line

text: Homo sapiens

text: cisplatin resistant cell line

text: cisplatin_resistant_cell line_MDB-Seq


text: Weatherall Institute of Molecular Medicine, University of Oxford

text: live

text: Generic

text: Dahomey wild type females

characteristic: female strain

text: Drosophila melanogaster

text: Head + Thorax tissues

text: SP+ control (SP+, SP0 construct in Dahomey wt background)

characteristic: strain of males to which females were mated


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Dahomey wild type females

text: Drosophila melanogaster

text: Head + Thorax tissues

text: SP0 knockout males in Dahomey wt background


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Dahomey wild type females

text: Drosophila melanogaster

text: Abdomen tissues


text: live

text: Generic

text: Dahomey wild type females

text: Drosophila melanogaster

characteristic: organism

text: Abdomen tissues

characteristic: title


characteristic: External Id

text: Developmental Genomics, LCDB, NIDDK, NIH

text: live

characteristic: INSDC status

text: Generic

text: 5 day old mated adults

characteristic: development stage

text: female

characteristic: gender

text: Drosophila melanogaster

text: Wholeflies, 5 day mated adults

text: whole flies

characteristic: tissue


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 5 day old mated adults

text: male

text: Drosophila melanogaster

text: Wholeflies, 5 day mated adults

characteristic: strain

text: whole flies


text: live

text: Generic

characteristic: SRA accession

text: 5 day old mated adults

text: female

text: Drosophila melanogaster

text: Wholeflies, 5 day mated adults

text: whole flies

text: Wholeflies_EDHsp60cED478_Female_DNASeq_R1


text: live

text: Generic

text: 5 day old mated adults

characteristic: developmental stage

text: female

text: Drosophila melanogaster

text: Wholeflies, 5 day mated adults

text: whole flies


text: live

text: Generic

text: 5 day old mated adults

text: male

text: Drosophila melanogaster

text: Wholeflies, 5 day mated adults

text: whole flies

text: Wholeflies_w1118_Male_R2_Illumina (ln7)


text: live

text: Generic

text: 5 day old mated adults

text: male

text: Drosophila melanogaster

text: Wholeflies, 5 day mated adults

text: whole flies

text: Wholeflies_w1118_Male_R2_Illumina (ln8)


text: live

text: Generic

text: 5 day old mated adults

text: male

text: Drosophila melanogaster

text: Wholeflies, 5 day mated adults

text: whole flies


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Saccharomonospora halophila 8

characteristic: description

text: Saccharomonospora halophila 8

characteristic: sample number

text: Generic sample from Saccharomonospora halophila 8


text: Washington University, Genome Sequencing Center

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Adult female (age unknown)

characteristic: life cycle stage information

text: Ancylostoma caninum

characteristic: sample id

text: cdna

characteristic: sample type

text: female

characteristic: stage

text: Ancylostoma caninum stage female


characteristic: External Id

text: Hernandez/Herr, CIG, University of Lausanne

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: HeLa, cycling

characteristic: cell line

text: HCFC1; polyclonal anti-HCF-1C (H12,{Wilson, 1993 #21})

characteristic: chip antibody

text: Homo sapiens

characteristic: organism

text: Suspension HeLa cells

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: HeLa, cycling

text: HCFC1, Nterm; polyclonal anti-HCF-1N (961-1011, {Machida, 2009 #109})

text: Homo sapiens

text: Suspension HeLa cells


characteristic: INSDC center name

text: live

text: Generic

text: HeLa, cycling

text: Homo sapiens

text: Suspension HeLa cells


characteristic: INSDC first public

text: live

text: Generic

text: HeLa, cycling

text: ZNF143; Polyclonal anti-ZNF143 (ZNF143, {Cold Spring Harbor, 19164 #4})

text: Homo sapiens

text: Suspension HeLa cells


text: live

text: Generic

text: HeLa, cycling

text: THAP11; polyclonal anti-THAP11 (G4275, {Dejosez, 2008 #99})

text: Homo sapiens

text: Suspension HeLa cells


text: live

text: Generic

text: HeLa, cycling

text: GABP; polyclonal anti-GABPa (sc-22810)

text: Homo sapiens

text: Suspension HeLa cells


text: live

text: Generic

text: HeLa, cycling

text: YY1; polyclonal anti-YY1 (sc-1703)

text: Homo sapiens

text: Suspension HeLa cells


text: live

text: Generic

text: HeLa, cycling

text: H3K36Me3; polyclonal H3K36Me3 (Abcam ab-9050)

text: Homo sapiens

text: Suspension HeLa cells


text: live

text: Generic

text: HeLa, cycling

text: H3K4Me3; polyclonal H3K4Me3 (Abcam ab-8580)

text: Homo sapiens

text: Suspension HeLa cells


text: live

text: Generic

text: HeLa, cycling

text: RPB2; polyclonal anti-Pol II (POLR2B, sc-67318)

text: Homo sapiens

text: Suspension HeLa cells


text: Immunology, Chiba University

text: live

text: Generic

text: primary CD4 T cells

characteristic: cell type

text: Southern Biotech

characteristic: chip antibody vendor

characteristic: culture condition

text: Mus musculus

characteristic: strain

text: spleen

characteristic: tissue


characteristic: External Id

text: Immunology, Chiba University

characteristic: INSDC last update

text: live

text: Generic

text: primary CD4 T cells

text: Santa Cruz Biotechnology

text: Mus musculus

text: spleen


text: Immunology, Chiba University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary CD4 T cells

text: Mus musculus

text: input DNA

text: spleen

text: input DNA_Th1_1


text: Immunology, Chiba University

text: live

text: Generic

text: primary CD4 T cells

text: Mus musculus

text: input DNA

text: spleen

text: input DNA_Th2_1


text: Immunology, Chiba University

text: live

text: Generic

text: primary CD4 T cells

characteristic: chip antibody

text: Upstate

text: Mus musculus

text: spleen


text: Immunology, Chiba University

text: live

text: Generic

text: primary CD4 T cells

text: Mus musculus

characteristic: organism

text: input DNA

text: spleen

text: input DNA_Th1_2


text: Immunology, Chiba University

text: live

text: Generic

text: primary CD4 T cells

text: Mus musculus

text: input DNA

text: spleen

text: input DNA_Th2_2

characteristic: title


text: Immunology, Chiba University

text: live

text: Generic

characteristic: NCBI submission model

text: primary CD4 T cells

text: Lake Placid Biologicals

text: Mus musculus

text: spleen


text: Lieb, Biology, University of North Carolina at Chapel Hill

text: live

text: Generic

characteristic: NCBI submission package

text: JL00001 DPY27

text: Covance

characteristic: chip antibody supplier

text: Caenorhabditis elegans

text: whole body

characteristic: stage

text: whole body


text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: Random size-selected (3 KB) DNA fragments of Aspergillus fumigatus Af10 genomic DNA

characteristic: description

text: Aspergillus fumigatus Af10

text: Generic sample from Aspergillus fumigatus Af10


PRJNA67239.North Korean

text: Broad Institute

text: live

text: Generic

text: blood

characteristic: isolation source

text: Plasmodium vivax North Korean

text: North Korean

characteristic: sample name

text: North Korean

characteristic: strain

text: Generic sample from Plasmodium vivax North Korean


characteristic: External Id

text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

characteristic: bi gssr sample id

text: broadinstitute.org:bsp.prod.sample:1MXHJ

characteristic: bi gssr sample lsid

text: Genomic DNA

characteristic: bi gssr sample type

text: Plasmodium vivax North Korean

text: North Korean

characteristic: sample id

text: not determined

characteristic: sex

text: North Korean

text: Plasmodium vivax North Korean Genomic DNA sample 79062.0


text: Centre for Vision & Vascular Science, Queen's University Belfast

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Primary retinal endothelial cells

characteristic: cell type

text: Bos taurus

characteristic: organism

characteristic: passage

text: Retinal microvasculature

characteristic: title


text: Division of Hematology/Oncology, Feinberg School of Medicine, Northwestern University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

characteristic: antibody catalog number

text: Santa Cruz

characteristic: antibody vendor

characteristic: cell line

text: Mus musculus

text: Megakaryocyte Progenitor Cell Line (G1ME)

text: Progenitor, GATA1-null

characteristic: stage


characteristic: External Id

characteristic: INSDC last update

text: live

text: Generic

text: anti-HA

text: Santa Cruz

text: Mus musculus

text: Mature, HA-GATA1-restored


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Millipore

text: Mus musculus

text: Progenitor, GATA1-null


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mus musculus

text: Progenitor, GATA1-null

text: G1ME_INPUT (GAII)


text: live

text: Generic

text: Mus musculus

characteristic: organism

text: Progenitor, GATA1-null

text: G1ME_INPUT (GAIIx)


text: Lab. Cytometry, Center for Medical Genetics, Ghent University

text: live

text: Generic

text: not amplified

characteristic: mycn

text: Homo sapiens

text: CLB-GA neuroblastoma cell line

text: CLB-GA neuroblastoma cell line


text: live

text: Generic

text: amplified

text: Homo sapiens

text: IMR-32 neuroblastoma cell line

text: IMR-32 neuroblastoma cell line

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: not amplified

text: Homo sapiens

text: SH-SY5Y neuroblastoma cell line

text: SH-SY5Y neuroblastoma cell line


characteristic: INSDC first public

text: live

text: Generic

text: amplified

text: Homo sapiens

text: N206 neuroblastoma cell line

text: N206 neuroblastoma cell line


text: live

text: Generic

characteristic: SRA accession

text: amplified

text: Homo sapiens

text: CHP-902R neuroblastoma cell line

text: CHP-902R neuroblastoma cell line


text: live

text: Generic

text: amplified

text: Homo sapiens

text: LA-N-2 neuroblastoma cell line

text: LA-N-2 neuroblastoma cell line


text: live

text: Generic

text: not amplified

text: Homo sapiens

text: SK-N-AS neuroblastoma cell line

text: SK-N-AS neuroblastoma cell line


text: live

text: Generic

text: not amplified

text: Homo sapiens

text: SJNB-1 neuroblastoma cell line

text: SJNB-1 neuroblastoma cell line


text: Baulcombe Group, Plant Sciences, University of Cambridge

text: live

text: Generic

characteristic: ecotype

text: UEA

characteristic: lab

text: Arabidopsis thaliana

text: Floral tissue sRNAs

text: Floral

characteristic: tissue

text: Floral A (SL30_124) [SL30_1]


text: live

text: Generic

text: UEA

text: Arabidopsis thaliana

text: Floral tissue sRNAs

text: Floral

text: Floral A (SL30_124) [SL30_2]


text: live

text: Generic

text: UEA

text: Arabidopsis thaliana

text: Floral tissue sRNAs

text: Floral

text: Floral A (SL30_124) [SL30_4]


text: live

text: Generic

text: UEA

text: Arabidopsis thaliana

text: Floral tissue sRNAs

text: Floral

text: Floral A [SL31]


text: live

text: Generic

text: University of Cambridge

text: Arabidopsis thaliana

text: Floral tissue sRNAs

text: Floral

text: Floral B [SL99]


text: live

text: Generic

text: University of Cambridge

text: Arabidopsis thaliana

text: Floral tissue sRNAs

text: Floral

text: Floral B [SL334]


text: live

text: Generic

text: University of Cambridge

text: Arabidopsis thaliana

text: Floral tissue sRNAs

text: Floral

text: Floral B [SL335]


text: live

text: Generic

text: University of Cambridge

text: Arabidopsis thaliana

text: Leaf tissue sRNAs

text: Leaf

text: Leaf B [SL161]


text: live

text: Generic

text: UEA

text: Arabidopsis thaliana

text: Leaf tissue sRNAs

text: Leaf

text: Leaf A [SL381_A]


text: live

text: Generic

text: UEA

text: Arabidopsis thaliana

text: Leaf tissue sRNAs

text: Leaf

text: Leaf A [SL382_H]


text: live

text: Generic

text: UEA

text: Arabidopsis thaliana

text: Seedling tissue sRNAs

text: Seedling

text: Seedling A [SL96]


text: live

text: Generic

text: UEA

text: Arabidopsis thaliana

text: Seedling tissue sRNAs

text: Seedling

text: Seedling A [SL68]


text: live

text: Generic

text: UEA

text: Arabidopsis thaliana

text: Seedling tissue sRNAs

text: Seedling

text: Seedling A [SL69]


text: live

text: Generic

text: University of Cambridge

text: Arabidopsis thaliana

text: Silique tissue sRNAs

text: Silique

text: Silique B [SL90_1]


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Embryos recovered by fecal floatation

characteristic: life cycle stage information

text: Ancylostoma caninum

characteristic: sample id

text: rna

characteristic: sample type

text: eggs

text: Baltimore

characteristic: strain

text: Ancylostoma caninum stage eggs strain Baltimore


characteristic: External Id

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Second stage larva (L2)

text: Ancylostoma caninum

text: rna

characteristic: stage

text: Baltimore

text: Ancylostoma caninum stage l2 strain Baltimore


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: First stage larva (L1)

text: Ancylostoma caninum

characteristic: organism

text: rna

text: Baltimore

text: Ancylostoma caninum stage L1 strain Baltimore


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Bacterial metagenome from an adult Fungus-growing Ambrosia Beetle Xyleborus affinis.

characteristic: description

text: beetle metagenome

text: Generic sample from beetle metagenome

characteristic: title


text: live

text: Generic

characteristic: SRA accession

text: Bacterial metagenome from the galleries of the Fungus-growing Ambrosia Beetle Xyleborus affinis.

text: beetle metagenome

text: Generic sample from beetle metagenome


text: live

text: Generic

text: Bacterial metagenome from an adult Southern Pine Beetle Dendroctonus frontalis.

text: beetle metagenome

text: Generic sample from beetle metagenome


text: live

text: Generic

text: Bacterial metagenome from the galleries of the Southern Pine Beetle Dendroctonus frontalis.

text: beetle metagenome

text: Generic sample from beetle metagenome


text: live

text: Generic

text: Bacterial metagenome from an adult Mountain Pine Beetle Dendroctonus ponderosae found infesting Lodgepole Pine Trees.

text: beetle metagenome

text: Generic sample from beetle metagenome


text: live

text: Generic

text: Bacterial metagenome from larvae of the Fungus-growing Ambrosia Beetle Xyleborus affinis.

text: beetle metagenome

text: Generic sample from beetle metagenome


text: live

text: Generic

text: Bacterial metagenome from an adult of the Fungus-growing Termite Macrotermes natalensis.

text: termite metagenome

text: Generic sample from termite metagenome


text: live

text: Generic

text: Bacterial metagenome from the galleries of Mountain Pine Beetle Dendroctonus ponderosae found infesting Hybrid Pine Trees.

text: beetle metagenome

text: Generic sample from beetle metagenome


text: live

text: Generic

text: Bacterial metagenome from the galleries of Mountain Pine Beetle Dendroctonus ponderosae found infesting Lodgepole Pine Trees.

text: beetle metagenome

text: Generic sample from beetle metagenome


text: live

text: Generic

text: Bacterial metagenome from the fungus comb of the Fungus-growing Termite Macrotermes natalensis.

text: termite metagenome

text: Generic sample from termite metagenome


text: live

text: Generic

text: Bacterial metagenome from an adult Mountain Pine Beetle Dendroctonus ponderosae found infesting Hybrid Pine Trees.

text: beetle metagenome

text: Generic sample from beetle metagenome


text: live

text: Generic

text: Bacterial metagenome from the larvae of the wood wasp Sirex noctilio.

text: wasp metagenome

text: Generic sample from wasp metagenome


text: live

text: Generic

text: Bacterial metagenome of the top layer of the internal refuse dumps from the leaf-cutter ant Atta texana

text: ant metagenome

text: Generic sample from ant metagenome


text: live

text: Generic

text: Bacterial metagenome of the bottom layer of the internal refuse dumps from the leaf-cutter ant Atta texana

text: ant metagenome

text: Generic sample from ant metagenome


text: live

text: Generic

text: Bacterial metagenome of the top layer from an external refuse dump of the leaf-cutter ant Atta colombica

text: ant metagenome

text: Generic sample from ant metagenome


text: live

text: Generic

text: Bacterial metagenome of the Bottom layer from an external refuse dump of the leaf-cutter ant Atta colombica

text: ant metagenome

text: Generic sample from ant metagenome


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Bacterial metagenome from adult wood wasp Sirex noctilio.

text: wasp metagenome

text: Generic sample from wasp metagenome


DaTucson 14024-0371.13

text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Drosophila ananassae

text: Drosophila ananassae Tucson 14024-0371.13


text: nuts

characteristic: IFSAC Category

text: FDA

text: live

text: Pathogen.env

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:3.0

characteristic: fda lab id

text: Pistacia vera L.

characteristic: host

characteristic: investigation type

characteristic: isolate

text: pistachio

characteristic: isolation source

text: pistachio nut (whole, raw):FOODON_03301825

characteristic: ontological term

characteristic: project name

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

characteristic: serovar

text: Food

characteristic: source type

text: enterica

characteristic: sub species

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 315996572


characteristic: External Id

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:5.0

text: stool

characteristic: environment (material)

text: Homo sapiens

text: clinical isolate

characteristic: isolate type

text: stool

characteristic: isolation-source

characteristic: organism

text: PMID: 21345093

text: Montevideo

characteristic: strain

text: enterica

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965


text: clinical/research, human

characteristic: IFSAC+ Category

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.cl

text: 0908ORJIX-1 Pepper Salami Outbreak

characteristic: Outbreak

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:3.0

characteristic: description

text: USA:MD

characteristic: geo loc name

text: Homo sapiens

characteristic: host

characteristic: ontological term

characteristic: pfge primary enzyme pattern

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

text: Human

text: enterica

characteristic: subspecies

text: Pathogen sample for Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507

characteristic: title


characteristic: External Id

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:5.0

text: Gallus domesticus

characteristic: investigation type

characteristic: isolate

characteristic: project name

text: PMID: 21345093

text: Montevideo

characteristic: serovar

text: enterica

characteristic: sub species

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 19N


text: live

text: environmental/food/other

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:3.0

characteristic: description

text: USA:CA

characteristic: geo loc name

text: Hearts of Romaine-Organic

characteristic: isolation source

characteristic: organism

characteristic: pfge primary enzyme pattern

text: PMID: 21345093

text: Montevideo

characteristic: strain

text: enterica

text: Pathogen sample for Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01


characteristic: External Id

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: Mozzarella

characteristic: environment (material)

text: Mozzarella

characteristic: isolation-source

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

text: enterica

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 414877

characteristic: title


text: FDA

text: live

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

text: Perch

characteristic: host

characteristic: investigation type

characteristic: isolate

characteristic: project name

text: PMID: 21345093

text: Montevideo

characteristic: serovar

text: enterica

characteristic: sub species

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 366867


FDA_2010_212_Sea Trout

characteristic: External Id

text: fish

characteristic: IFSAC Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: Keywords: GSC:MIxS;MIGS:3.0

characteristic: description

characteristic: fda lab id

text: Cynoscion nebulosus

text: FDA_2010_212_Sea Trout

text: frozen sea trout

characteristic: isolation source

text: brown trout:FOODON_03411479, trout (frozen):FOODON_03307325

characteristic: ontological term

characteristic: organism

text: PMID: 21345093

text: Montevideo

text: Food

characteristic: source type

characteristic: strain

text: enterica

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 413180


FDA_2010_213_King Fish

text: FDA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

text: Scomberomorus cavalla

characteristic: host

characteristic: investigation type

text: FDA_2010_213_King Fish

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

text: enterica

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 446600

characteristic: title


FDA_2010_214_Black Pepper-1

characteristic: External Id

text: other (flavoring or seasoning)

characteristic: IFSAC Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: Keywords: GSC:MIxS;MIGS:3.0

characteristic: description

text: Piper nigrum

text: FDA_2010_214_Black Pepper-1

characteristic: isolate

text: peppercorn

characteristic: project name

text: PMID: 21345093

text: Montevideo

characteristic: serovar

text: Food

text: enterica

characteristic: sub species

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1


FDA_2010_215_Red Pepper-2

text: FDA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:5.0

text: Red Pepper Flakes

characteristic: environment (material)

text: FDA_2010_215_Red Pepper-2

text: Red Pepper Flakes

characteristic: isolation-source

characteristic: organism

text: PMID: 21345093

text: Montevideo

characteristic: strain

text: enterica

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1


characteristic: External Id

text: other (flavoring or seasoning)

characteristic: IFSAC Category

text: FDA

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: fda lab id

text: USA: RI

characteristic: geo loc name

text: FDA_2010_144_Black Pepper-6

text: peppercorn

characteristic: isolation source

characteristic: ontological term

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

text: Food

characteristic: source type

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1

characteristic: title


FDA_2010_216_Black Pepper-2

text: other (flavoring or seasoning)

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:3.0

characteristic: description

text: Piper nigrum

characteristic: host

characteristic: investigation type

text: FDA_2010_216_Black Pepper-2

characteristic: isolate

text: whole black pepper

text: black pepper plant:FOODON_03411191, whole:FOODON_03430131

characteristic: project name

text: PMID: 21345093

text: Montevideo

characteristic: serovar

text: Food

text: enterica

characteristic: sub species

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 609460


FDA_2010_219_Red Pepper-1

characteristic: External Id

text: seeded vegetables (solanaceous)

characteristic: IFSAC Category

text: FDA

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIGS:3.0

text: Red Pepper Flakes

characteristic: environment (material)

text: FDA_2010_219_Red Pepper-1

text: crushed red pepper

characteristic: isolation source

text: red pepper crushed:FOODON_03304285

characteristic: ontological term

characteristic: organism

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

text: Food

characteristic: strain

text: enterica

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 556152


text: clinical/research, human

characteristic: IFSAC+ Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: Keywords: GSC:MIxS;MIGS:3.0

characteristic: description

text: stool

text: Homo sapiens

text: clinical isolate

characteristic: isolate type

text: PMID: 21345093

text: Montevideo

text: Human

characteristic: source type

text: enterica

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077

characteristic: title


characteristic: External Id

text: clinical/research, human

text: FDA

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIGS:3.0

text: stool

characteristic: environment (material)

text: Homo sapiens

characteristic: host

characteristic: investigation type

characteristic: isolate

text: clinical isolate

characteristic: project name

text: PMID: 21345093

text: Montevideo

characteristic: serovar

text: Human

text: enterica

characteristic: sub species

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047


text: clinical/research, human

characteristic: IFSAC+ Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: Keywords: GSC:MIxS;MIGS:3.0

text: stool

text: Homo sapiens

text: clinical isolate

characteristic: ontological term

characteristic: organism

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

text: Human

characteristic: strain

text: enterica

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055


characteristic: External Id

text: FDA

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: stool

text: Homo sapiens

text: clinical isolate

characteristic: isolate type

text: stool

characteristic: isolation-source

text: PMID: 21345093

text: Montevideo

text: enterica

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052

characteristic: title


text: clinical/research, human

characteristic: IFSAC+ Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: Keywords: GSC:MIxS;MIGS:3.0

text: stool

characteristic: environment (material)

text: Homo sapiens

characteristic: host

characteristic: investigation type

characteristic: isolate

text: clinical isolate

characteristic: project name

text: PMID: 21345093

text: Montevideo

characteristic: serovar

text: Human

characteristic: source type

text: enterica

characteristic: sub species

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312


characteristic: External Id

text: clinical/research, human

text: FDA

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIGS:3.0

text: stool

text: Homo sapiens

text: clinical isolate

characteristic: ontological term

characteristic: organism

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

text: Human

characteristic: strain

text: enterica

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258


text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS.ba

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: Pistacia vera L.

characteristic: host

characteristic: investigation type

text: PMID: 21345093

text: Montevideo

text: enterica

text: MIGS Cultured Bacterial/Archaeal sample from Salmonella enterica subsp. enterica serovar Montevideo str. 315731156

characteristic: title