text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 19_2_c FAIRE-seq


status: PUBLIC

characteristic: External Id

text: KAIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Saccharomyces cerevisiae

characteristic: organism

text: yeast extract

tag: attribute

text: BY4716xRM11_1a segregant

characteristic: strain

text: 19_3_c FAIRE-seq

characteristic: title


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 19_4_b FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 2_2_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 2_3_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 2_4_a FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 2_5_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 2_6_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 20_2_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 20_3_c FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 20_4_c FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 21_1_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 21_2_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 21_3_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 22_2_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 23_3_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 23_5_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 24_1_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 25_1_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 25_3_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 25_4_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 26_1_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 26_2_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 3_1_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 3_3_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 3_4_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 3_5_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 4_1_c FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 4_4_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 5_1_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 5_5_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 6_2_b FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 6_3_c FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 6_4_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 6_6_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 6_7_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 7_1_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 7_2_c FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 7_4_c FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 7_5_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 7_6_c FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 7_7_c FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 7_8_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 8_1_a FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 8_2_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 8_3_a FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 8_4_c FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 8_5_b FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 8_6_c FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 8_7_b FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 9_1_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 9_2_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 9_3_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 9_4_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 9_5_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 9_6_d FAIRE-seq


text: KAIST

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast extract

text: BY4716xRM11_1a segregant

text: 9_7_d FAIRE-seq


text: Gene Expression & Regulation, The Wistar Institute

text: live

text: Generic

characteristic: development stage

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: WildType Day11

text: Whole Embryo

characteristic: tissue

text: Small RNAs from Mouse Embyro Day11


text: live

text: Generic

text: ADAR1 KO

text: Mus musculus

text: ADAR1 KO Day11

text: Whole Embryo

text: Small RNAs from ADAR1 KO Mouse Embyro Day11


text: live

text: Generic

text: wild type

text: Mus musculus

text: WildType Day11.5

text: Whole Embryo

text: Small RNAs from Mouse Embyro Day11.5


text: live

text: Generic

text: ADAR1 KO

text: Mus musculus

text: ADAR1 KO Day11.5

text: Whole Embryo

text: Small RNAs from ADAR1 KO Mouse Embyro Day11.5


text: live

text: Generic

text: wild type

text: Mus musculus

text: WildType Day11.5

text: Whole Embryo

text: mRNAs from WildType Embryo Day11.5


text: live

text: Generic

text: ADAR1 KO

text: Mus musculus

text: ADAR1 KO Day11.5

text: Whole Embryo

text: mRNAs from ADAR1 KO Embryo Day11.5


Honeybee

text: Chinese National Human Genome Center at Shanghai

text: live

text: Generic

text: A federal colony of Apis cerana cerana was collected in Chinese Honeybee Natural Protection Area of Wufu Mountain, Jiangxi Province, China. It was believed that this place (28*09′, 118*03′) was where Fabricius collected bee samples for his original descriptions of Apis cerana in 1793. For this experiment, adult worker bees were collected randomly from combs.

characteristic: description

text: Apis cerana cerana

text: Decoding the brain transcriptome of the Eastern honeybee (Apis cerana) based on pyrosequencing


text: Marco Blanchette, Stowers Institute for Medical Research

text: live

text: Generic

characteristic: cell type

text: tagged eIF4AIII followed by endogenous Y14

characteristic: ip

text: Drosophila melanogaster

text: S2 cells


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: tagged Btz followed by endogenous eIF4AIII

text: Drosophila melanogaster

text: S2 cells


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: tagged Y14 followed by endogenous eIF4AIII

text: Drosophila melanogaster

text: S2 cells


text: School of Horticulture, Anhui Agricultural University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: pear fruit developmental stage 1

characteristic: developmental stage

text: Pyrus x bretschneideri

text: Shoots, young leaves, extending leaves, mature leaves, flowers and fruit (containing immature seeds)

text: Pyrus bretschneideri Rehd. cv. Dangshansuli

text: Pear fruit developmental stage 1


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: pear fruit developmental stage 2

text: Pyrus x bretschneideri

text: Pear fruit developmental stage 2


text: live

text: Generic

text: pear fruit developmental stage 3

text: Pyrus x bretschneideri

characteristic: organism

characteristic: strain

text: Pear fruit developmental stage 3

characteristic: title


text: live

text: Generic

text: pear fruit developmental stage 4

text: Pyrus x bretschneideri

characteristic: tissue

text: Pear fruit developmental stage 4


text: live

text: Generic

text: pear fruit developmental stage 5

text: Pyrus x bretschneideri

text: Pear fruit developmental stage 5


Sogatella furcifera

text: zhejiang university

text: live

text: Generic

text: Sogatella furcifera

text: viruliferous and non-viruliferous Sogatella furcifera


text: Chinese Academy of Agricultural Sciences

text: live

text: Generic

text: Williams 82

characteristic: cultivar

text: Glycine max

text: root, stem, leaf, and inflorescence


text: live

text: Generic

text: Williams 82

text: Glycine max

text: root, stem, leaf, and inflorescence

text: Kns211_small RNAs


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: Bethyl A302-275A

characteristic: antibody catalog number

text: Bethyl

characteristic: antibody manufacturer

text: V6.5 embryonic stem cells

characteristic: cell line

characteristic: chip antibody

text: Mus musculus

text: Embryonic stem cells

text: 12 hr

characteristic: time

text: CapH2 Nocodazole mES MM8

text: 200 ng/ml nocodazole

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Bethyl A302-275A

text: Bethyl

text: V6.5 embryonic stem cells

text: control

characteristic: knockdown

text: Mus musculus

text: Embryonic stem cells

text: CapH2 shGFP mES MM8


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Bethyl A302-275A

text: Bethyl

text: V6.5 embryonic stem cells

text: Nipbl

text: Mus musculus

characteristic: organism

text: Embryonic stem cells

text: CapH2 shNipbl mES MM8


text: live

text: Generic

text: V6.5 embryonic stem cells

text: None WCE

text: control

text: Mus musculus

text: Embryonic stem cells

text: WCE shGFP mES MM8

characteristic: title


text: live

text: Generic

text: V6.5 embryonic stem cells

text: None WCE

text: Nipbl

text: Mus musculus

text: Embryonic stem cells

text: WCE shNipbl mES MM8


text: live

text: Generic

text: Tatsuya Hirano AFR319-3L

characteristic: antibody catalog number

text: Tatsuya Hirano

characteristic: antibody manufacturer

text: V6.5 embryonic stem cells

text: Mus musculus

text: Embryonic stem cells

text: CapD3 WT mES MM8


text: live

text: Generic

text: Tatsuya Hirano AFR319-3L

text: Tatsuya Hirano

text: V6.5 embryonic stem cells

characteristic: cell line

characteristic: chip antibody

text: Mus musculus

text: Embryonic stem cells

text: 12 hr

text: CapD3 Nocodazole mES MM8

text: 200 ng/ml nocodazole


text: live

text: Generic

text: Tatsuya Hirano AFR310-4L

text: Tatsuya Hirano

text: V6.5 embryonic stem cells

text: CapG

text: Mus musculus

text: Embryonic stem cells

text: CapG WT mES MM8


text: live

text: Generic

text: Tatsuya Hirano AFR310-4L

text: Tatsuya Hirano

text: V6.5 embryonic stem cells

text: CapG

text: Mus musculus

text: Embryonic stem cells

text: 12 hr

characteristic: time

text: CapG Nocodazole mES MM8

text: 200 ng/ml nocodazole

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: V6.5 embryonic stem cells

text: None WCE

text: Mus musculus

text: Embryonic stem cells

text: 12 hr

text: WCE Nocodazole mES MM8

text: 200 ng/ml nocodazole


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Santa Cruz SC-899

text: Santa Cruz

text: V6.5 embryonic stem cells

text: RNA Pol II (Rpb1 N-terminus)

text: Mus musculus

text: Embryonic stem cells

text: Pol2 Asynchronous mES MM8


characteristic: INSDC secondary accession

text: live

text: Generic

text: Santa Cruz SC-899

text: Santa Cruz

text: V6.5 embryonic stem cells

text: RNA Pol II (Rpb1 N-terminus)

text: Mus musculus

text: Embryonic stem cells

text: 12 hr

text: Pol2 Nocodazole mES MM8

text: 200 ng/ml nocodazole


text: live

characteristic: INSDC status

text: Generic

text: Bethyl A300-080A

text: Bethyl

text: V6.5 embryonic stem cells

text: Mus musculus

text: Embryonic stem cells

text: Rad21 rep1 WT mES MM8


text: live

text: Generic

characteristic: NCBI submission model

text: Bethyl A300-080A

text: Bethyl

text: V6.5 embryonic stem cells

text: Mus musculus

text: Embryonic stem cells

text: Rad21 rep2 WT mES MM8


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

characteristic: NCBI submission package

text: Bos grunniens

text: brain

text: brain

characteristic: tissue

text: brain


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

characteristic: SRA accession

text: Bos grunniens

characteristic: organism

text: heart

text: heart

text: heart


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Bos grunniens

text: liver

text: liver

text: liver

characteristic: title


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Bos grunniens

text: lung

text: lung

text: lung


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Bos grunniens

text: spleen

text: spleen

text: spleen


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Bos grunniens

text: stomach

text: stomach

text: stomach


text: Capital Normal University

text: live

text: Generic

characteristic: developmental stage

text: Physcomitrium patens

text: leafy shoot


text: Capital Normal University

text: live

text: Generic

text: Caulonema

text: Physcomitrium patens

text: Caulonema

text: protonema

text: Caulonema


text: Capital Normal University

text: live

text: Generic

text: Chloronema

text: Physcomitrium patens

text: Chloronema

text: protonema

text: Chloronema


text: Shilatifard, Stowers Institute for Medical Research

text: live

text: Generic

text: mES

characteristic: cell type

text: His tag Cdk9(amino acids 204-372)

text: Mus musculus

text: passage 10-18

characteristic: passages

text: C57BL/6 (female) x 129/S (male)

characteristic: strain


text: Washington University, Genome Sequencing Center

text: live

text: Generic

characteristic: sample id

characteristic: sample name

text: pooled dna

characteristic: sample type

text: Gauthier

text: Generic sample from Treponema pallidum subsp. pertenue str. Gauthier


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Treponema pallidum subsp. pertenue str. Gauthier

text: Pooled DNA 2008-10-07 pooled dna Set 1

text: pooled dna

text: Gauthier


BDMix

text: Boyce Thompson Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: cultivar: Black Diamond

characteristic: description

text: Citrullus lanatus

text: Pool of fruits at 11,20, 30 and 40 days after anthesis


text: Boyce Thompson Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Cultivar: Charleston Grey

text: Citrullus lanatus

text: Fruits at 11 days after anthesis


text: Boyce Thompson Institute

text: live

text: Generic

text: Cultivar: Charleston Grey

text: Citrullus lanatus

characteristic: organism

text: fruits at 20 days after anthesis

characteristic: title


text: Boyce Thompson Institute

text: live

text: Generic

text: Cultivar: Charleston Grey

text: Citrullus lanatus

text: fruits at 30 days after anthesis


text: Boyce Thompson Institute

text: live

text: Generic

text: Cultivar: Charleston Grey

text: Citrullus lanatus

text: fruits at 40 days after anthesis


CGMix

text: Boyce Thompson Institute

text: live

text: Generic

text: Cultivar: Charleston Grey

text: Citrullus lanatus


text: University of California, Riverside

text: live

text: Generic

text: Hordeum vulgare subsp. vulgare

text: Morex Barley BAC pools Hv5


Cyanophora paradoxa genomic DNA

text: Rutgers University

text: live

text: Generic

text: Cyanophora paradoxa

text: Cyanophora paradoxa genomic DNA


Cyanophora paradoxa RNAseq

text: Rutgers University

text: live

text: Generic

text: Cyanophora paradoxa

text: Cyanophora paradoxa RNAseq


text: Boyce Thompson Institute

text: live

text: Generic

text: Cold shock protein consensus 22 residues long fragment (AVGTVKWFNAEKGFGFITPDDG)

text: Solanum lycopersicum

text: tomato leaves treated with 1 uM csp22 for 30 m


Transcriptome of Piper nigrum L.

text: Universidade Federal do Para

text: live

text: Generic

text: Piper nigrum

text: bragantina

text: De novo assembly of Piper nigrum L.


text: Boyce Thompson Institute

text: live

text: Generic

text: Flagellin consensus 22 residues long fragment (QRLSTGSRINSAKDDAAGLQIA)

text: Solanum lycopersicum

text: tomato leaves treated with 1 uM flg22 consensus for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: Flagellin 28 residues portion from P. syringae tomato (Pst) T1 (ESTNILQRMRELAVQSRNDSNSSTDRDA)

text: Solanum lycopersicum

text: tomato leaves treated with 1 uM flgII-28 for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: Lipopolysaccharides from Salmonella enterica serotype typhimurium (Sigma L2262)

text: Solanum lycopersicum

text: tomato leaves treated with 100 ug/mL LPS S. tiphymurium for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: Sonicated peptidoglycan from E. coli K12 (InvivoGen tlrl-ksspgn)

text: Solanum lycopersicum

text: tomato leaves treated with 100 ug/mL PGN for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: Pathogenic Pst strain

text: Solanum lycopersicum

text: tomato leaves treated with 5 x 10e6 CFU/mL Pst DC3000 for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: DC3000 mutant, lacking a functional type 3 secretion system (T3SS)

text: Solanum lycopersicum

text: tomato leaves treated with 5 x 10e6 CFU/mL DC3000 &#916;hrcQ-U for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: DC3000 mutant, lacking a functional T3SS and flagellin

text: Solanum lycopersicum

text: tomato leaves treated with 5 x 10e6 CFU/mL DC3000 &#916;hrcQ-U/&#916;fliC for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: DC3000 mutant, with a functional T3SS, but has 28 effectors deleted

text: Solanum lycopersicum

text: tomato leaves treated with 5 x 10e6 CFU/mL DC3000 &#916;28 for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: DC3000 mutant, with a functional T3SS, but has AvrPto and AvrPtoB effectors deleted

text: Solanum lycopersicum

text: tomato leaves treated with 5 x 10e6 CFU/mL DC3000 ΔavrPto/ΔavrPtoB for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: tomato leaves treated with 10e8 CFU/mL P. fluorescens 55 for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: tomato leaves treated with 10e8 CFU/mL P. putida KT2240 for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: tomato leaves treated with 10e8 CFU/mL A. tumefaciens GV2260 for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: Mock for PAMP treatment

text: Solanum lycopersicum

text: tomato leaves treated with 10 mM MgCl2 for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: Mock for bacterial treatment

text: Solanum lycopersicum


text: Boyce Thompson Institute

text: live

text: Generic

text: Untreated control for PAMP treatment

text: Solanum lycopersicum

text: tomato leaves untreated for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: Untreated control for bacterial treatment

text: Solanum lycopersicum

text: tomato leaves untreated for 30 m


text: Boyce Thompson Institute

text: live

text: Generic

text: Cold shock protein consensus 22 residues long fragment (AVGTVKWFNAEKGFGFITPDDG)

text: Solanum lycopersicum

text: tomato leaves treated with 1 uM csp22 for 6h


text: Boyce Thompson Institute

text: live

text: Generic

text: Flagellin consensus 22 residues long fragment (QRLSTGSRINSAKDDAAGLQIA)

text: Solanum lycopersicum

text: tomato leaves treated with 1 uM flg22 consensus for 6h


text: Boyce Thompson Institute

text: live

text: Generic

text: Flagellin 28 residues portion from P. syringae tomato (Pst) T1 (ESTNILQRMRELAVQSRNDSNSSTDRDA)

text: Solanum lycopersicum

text: tomato leaves treated with 1 uM flgII-28 for 6h


text: Boyce Thompson Institute

text: live

text: Generic

text: Lipopolysaccharides from Salmonella enterica serotype typhimurium (Sigma L2262)

text: Solanum lycopersicum

text: tomato leaves treated with 100 ug/mL LPS S. tiphymurium for 6h


text: Boyce Thompson Institute

text: live

text: Generic

text: Sonicated peptidoglycan from E. coli K12 (InvivoGen tlrl-ksspgn)

text: Solanum lycopersicum

text: tomato leaves treated with 100 ug/mL PGN for 6h


text: College of Life Sciences, Nanjing Normal University

text: live

text: Generic

text: Total genomic DNA was extracted following the high-salt method from dorsal anterior thorax and femur muscle of a fresh Blattella bisignata. This extract was concentrated to approx. 3.2ug/uL using a vacufuge. Approximately 15 ug of DNA was randomly fragmented by restriction digest using RsaI. The digest was visualised on a 1% agarose gel, and products of approximately 0.75-1.5 kb were excised and purified using a QIAGEN Gel Extraction Kit (eluted in 50uL elution buffer). This size selected DNA was quantified initially at 15ng/uL,and subsequently vacufuged to a final concentration of 45 ng/uL, in order to provide the correct molar ratio (>10:1) of insert to vector for blunt-ended ligation. Approximately 150ng of DNA was ligated into 25ng of PCR Zero Blunt vector (Invitrogen) and transformed into competent One Shot TOP10 E.coli cells (Invitrogen), plated onto agar plates containing kanamycin (50 ug/mL), and grown overnight at 37 deg C.

text: Adult

characteristic: dev-stage

text: Body

characteristic: organ

text: Blattella bisignata

text: RsaI

text: RsaI

text: Male

characteristic: sex

text: Dorsal anterior thorax and femur muscle

characteristic: tissue-type

text: Blattella bisignata genomic library

text: E.coli

characteristic: vector


characteristic: External Id

text: Boyce Thompson Institute

text: live

text: Generic

text: Pathogenic Pst strain

text: Solanum lycopersicum

text: tomato leaves treated with 5 x 10e6 CFU/mL Pst DC3000 for 6h


text: Boyce Thompson Institute

characteristic: INSDC center name

text: live

text: Generic

text: DC3000 mutant, lacking a functional type 3 secretion system (T3SS)

text: Solanum lycopersicum

text: tomato leaves treated with 5 x 10e6 CFU/mL DC3000 &#916;hrcQ-U for 6h


text: Boyce Thompson Institute

characteristic: INSDC first public

text: live

text: Generic

text: DC3000 mutant, lacking a functional T3SS and flagellin

text: Solanum lycopersicum

text: tomato leaves treated with 5 x 10e6 CFU/mL DC3000 &#916;hrcQ-U/&#916;fliC for 6h


text: Boyce Thompson Institute

characteristic: INSDC last update

text: live

text: Generic

text: DC3000 mutant, with a functional T3SS, but has 28 effectors deleted

text: Solanum lycopersicum

text: tomato leaves treated with 5 x 10e6 CFU/mL DC3000 &#916;28 for 6h


text: Boyce Thompson Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: DC3000 mutant, with a functional T3SS, but has AvrPto and AvrPtoB effectors deleted

text: Solanum lycopersicum

text: tomato leaves treated with 5 x 10e6 CFU/mL DC3000 &#916;avrPto/&#916;avrPtoB for 6h


text: Boyce Thompson Institute

text: live

characteristic: INSDC status

text: Generic

text: Solanum lycopersicum

text: tomato leaves treated with 10e8 CFU/mL P. fluorescens 55 for 6h


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: tomato leaves treated with 10e8 CFU/mL P. putida KT2240 for 6h


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: tomato leaves treated with 10e8 CFU/mL A. tumefaciens GV2260 for 6h


text: Boyce Thompson Institute

text: live

text: Generic

text: Mock for PAMP treatment

characteristic: description

text: Solanum lycopersicum

text: tomato leaves treated with 10 mM MgCl2 for 6h


text: Boyce Thompson Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Mock for bacterial treatment

text: Solanum lycopersicum


text: Boyce Thompson Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Untreated control for PAMP treatment

text: Solanum lycopersicum

text: tomato leaves untreated for 6h


text: Boyce Thompson Institute

text: live

text: Generic

characteristic: SRA accession

text: Untreated control for bacterial treatment

text: Solanum lycopersicum

text: tomato leaves untreated for 6h


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Dekkera bruxellensis CBS 2499

text: Brettanomyces bruxellensis CBS 2499

characteristic: organism

text: CBS 2499

characteristic: strain

text: Generic sample from Dekkera bruxellensis CBS 2499


text: live

text: Generic

text: Dichomitus squalens LYAD-421 SS1

text: Dichomitus squalens LYAD-421 SS1

text: LYAD-421 SS1

text: Generic sample from Dichomitus squalens LYAD-421 SS1

characteristic: title


raw water

text: Tsinghua Univ

text: live

text: Generic

text: Myxococcales

text: water


name: Transcriptome profiling of ayu macrophages

text: Ningbo University

text: live

text: Generic

text: Plecoglossus altivelis

text: Transcriptome profiling of head-kidney macrophages in Plecoglossus altivelis(ayu)


Ruminal microbiome

text: Chung Ang University

text: live

text: Generic

text: bovine gut metagenome

text: Microbial Communities and Metabolites of Rumens from Various Ruminants using a Barcoded Pyrosequencing and 1H NMR Spectroscopy


text: Institute of Biomedical Technologies, National Research Council

text: live

text: Generic

text: Moneymaker

characteristic: cultivar/accession

text: grown root (hypogeous)

characteristic: developmental stage

text: Solanum lycopersicum

text: Root

text: Root

characteristic: tissue

text: Root


text: live

text: Generic

text: Moneymaker

text: upper stem, below apical meristem

text: Solanum lycopersicum

text: Stem

text: Stem

text: Stem


text: live

text: Generic

text: Moneymaker

text: fully expanded leaf, 2-3 weeks old

text: Solanum lycopersicum

text: Leaf

text: Leaf

text: Leaf


text: live

text: Generic

text: Moneymaker

text: flower, complete (excluding sepals). Full anthesis

text: Solanum lycopersicum

text: Flower

text: Flower

text: Flower


text: live

text: Generic

text: Moneymaker

text: fruit at mature green stage (fully expanded, green)

text: Solanum lycopersicum

text: Fruit Mature Green

text: Fruit Mature Green

text: Fruit Mature Green


text: live

text: Generic

text: Moneymaker

text: fruit at breaker stage (fully expanded, turning color)

text: Solanum lycopersicum

text: Fruit Breaker

text: Fruit Breaker

text: Fruit Breaker


text: live

text: Generic

text: Moneymaker

text: fruit at ripe stage (fully expanded, red)

text: Solanum lycopersicum

text: Fruit Ripe

text: Fruit Ripe

text: Fruit Ripe


text: live

text: Generic

text: fully expanded leaf, 2-4 weeks old

text: Solanum pimpinellifolium

text: Leaf

text: Leaf

text: Leaf pimpinellifolium


text: live

text: Generic

text: Solanum pimpinellifolium

text: Fruit Ripe

text: Fruit Ripe

text: Fruit Ripe pimpinellifolium


metagenome SP chimney WGA

text: University of Hamburg

text: live

text: Generic

text: hydrothermal vent metagenome

text: Metagenomics reveal controls acting on microbes colonizing hydrothermal vent chimneys


Naive human SCFV Library

text: Novozymes

text: live

text: Generic

text: Homo sapiens

text: Naive human SCFV Library


text: Institution of animal genetics and breeding

text: live

text: Generic

text: hepatocyte

characteristic: cell type

text: duck week 1 to 8

characteristic: dev-stage

text: Anas platyrhynchos

text: female

characteristic: sex

text: liver

characteristic: tissue-type

text: Duck hepatocyte library

characteristic: vector


characteristic: External Id

text: Institute of Tabarestan

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Shoot cDNA library of Aeluropus littoralis that was generated from salt treated seedling (0, 120, 250, 450 and 600 mM of NaCl) via cDNA-AFLP

characteristic: lab-host

text: shoot

characteristic: organ

text: Aeluropus littoralis

text: Shoot


text: Institute of Tabarestan

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: root cDNA library of Aeluropus littoralis that was generated from salt treated seedling (0, 120, 250, 450 and 600mM of NaCl) via cDNA-AFLP

characteristic: description

text: Root

text: Aeluropus littoralis

characteristic: organism

text: Root

text: Root cDNA library of Aeluropus littoralis


text: National Bureau of Plant Genetic Resources, PUSA campus

text: live

text: Generic

text: Description: Plants were raised by sowing the seeds in pots containing sand: soil: composted coirpith: peat mixture after surface sterilization with 70% ethanol for 10 min, thoroughly rinsed with distilled water thrice. under controlled condition at National Phytotron Facility at IARI, PUSA campus, New Delhi. The pots were maintained in a glass house under natural photoperiod of 10h light and 14h dark. Suseptible accession was maintained at 100% field capacity by watering daily. Tolerant accession was maintained at 20% of field capacity. Fresh leaves were collected and stored in RNALater (invitrogen) for RNA isolation using TRIZOL reagent (Invitrogen). First-strand cDNA synthesis was initiated from the of driver (susceptible) and tester (tolerant) SMARTer cDNA synthesis (Clonetech). Subtractive hybridization was performed between adapter ligated driver ss cDNA (suseptible) and tester (tolerant) cDNA. SSH was performed using PCR-Select cDNA subtraction kit (Clonetech). The product out of SSH was cloned using TOPO TA cloning kit containing TOPO 2.1 vector and transformed in DH5alpha E.coli cells. Plasmids were isolated using HiPurA (Himedia) plasmid purification kit. Cloned inserts were aligned and vectors were removed to obtain to trim high quality region. Sequences that retained at least 100 base were submitted to GenBank.

text: pre-flowering

text: E.coli

text: Macrotyloma uniflorum

text: Eco R1

text: Eco R1

text: leaf

text: SSH library of moisture-stressed Horsegram cDNA

characteristic: title


text: Pluchino laboratory, Brain Repair Centre, University of Cambridge

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Neural Progenitor Cells

characteristic: cell type

text: Basal medium

characteristic: culturing conditions

text: Mus musculus

text: SVZ derived Neural Progenitor Cells cultured in basal conditions

text: SJL

characteristic: strain


characteristic: External Id

text: live

text: Generic

text: Neural Progenitor Cells

text: Th1 cytokines supplemented medium (500 IU/ml recombinant mouse IFN-γ, BD Biosciences; 200 UI/ml recombinant mouse TNF-α, Pepro Tech Inc.; 100 UI/ml recombinant mouse IL-1β, Euroclone)

text: Mus musculus

text: SVZ derived Neural Progenitor Cells cultured in Th1 conditions

text: SJL


characteristic: INSDC center name

text: live

text: Generic

text: Neural Progenitor Cells

text: Th2 cytokines supplemented medium (10 ng/ml recombinant murine IL-4, R&D; 10 ng/ml recombinant mouse IL-5, R&D; 10 ng/ml recombinant mouse IL-13, R&D)

text: Mus musculus

text: SVZ derived Neural Progenitor Cells cultured in Th2 conditions

text: SJL


characteristic: INSDC first public

text: live

text: Generic

text: Exosomes

text: Basal medium

text: Mus musculus

text: Exosomes derived from Neural Progenitor Cells cultured in basal conditions

text: SJL


characteristic: INSDC last update

text: live

text: Generic

text: Exosomes

text: Mus musculus

text: Exosomes derived from Neural Progenitor Cells cultured in Th1 conditions

text: SJL


text: live

text: Generic

text: Exosomes

text: Mus musculus

text: Exosomes derived from Neural Progenitor Cells cultured in Th2 conditions

text: SJL


text: live

text: Generic

text: Microvesicles

text: Basal medium

text: Mus musculus

text: Microvesicles derived from Neural Progenitor Cells cultured in basal conditions

text: SJL


text: live

text: Generic

text: Microvesicles

text: Mus musculus

text: Microvesicles derived from Neural Progenitor Cells cultured in Th1 conditions

text: SJL


text: live

text: Generic

text: Microvesicles

text: Mus musculus

text: Microvesicles derived from Neural Progenitor Cells cultured in Th2 conditions

text: SJL


N.tetra

text: Uppsala University

text: live

text: Generic

text: Neurospora tetrasperma

text: Neurospora tetrasperma genomic sequencing


text: Myles, Fralin Life Science Institute, Virginia Tech

text: live

text: Generic

characteristic: days post infection

text: C6/36 CHIKV B2(FHV)

characteristic: infection

text: Aedes albopictus

text: larva

text: larva

characteristic: tissue

text: C6/36 CHIKV B2(FHV) rep1 (truSeq)


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: C6/36 CHIKV B2(FHV)

text: Aedes albopictus

text: larva

text: larva

text: C6/36 CHIKV B2(FHV) rep2 (truSeq)


text: live

text: Generic

characteristic: NCBI submission package

text: C6/36 CHIKV B2(FHV)

text: Aedes albopictus

text: larva

text: larva

text: C6/36 CHIKV B2(FHV) rep3 (truSeq)


text: live

text: Generic

text: C6/36 CHIK B2 (FHV) c44a

text: Aedes albopictus

characteristic: organism

text: larva

text: larva

text: C6/36 CHIK B2 (FHV) c44a rep1 (truSeq)


text: live

text: Generic

text: C6/36 CHIK B2 (FHV) c44a

text: Aedes albopictus

text: larva

text: larva

text: C6/36 CHIK B2 (FHV) c44a rep2 (truSeq)

characteristic: title


characteristic: INSDC secondary accession

text: live

text: Generic

text: C6/36 CHIK B2 (FHV) c44a

text: Aedes albopictus

text: larva

text: larva

text: C6/36 CHIK B2 (FHV) c44a rep3 (truSeq)


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: SRA accession

text: mycelia

text: Acremonium alcalophilum JCM 7366 xylose

characteristic: description

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Sodiomyces alcalophilus JCM 7366

text: Generic sample from Acremonium alcalophilum JCM 7366


characteristic: External Id

text: Statistical Genomics Lab, Animal & Avian Sciences, University of Maryland

text: live

text: Generic

characteristic: chip

text: infected

characteristic: infection status

text: Gallus gallus

text: thymus tissue

text: line 63

characteristic: strain

text: thymus


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: control

text: Gallus gallus

text: thymus tissue

text: line 63

text: thymus


text: live

characteristic: INSDC status

text: Generic

text: infected

text: Gallus gallus

text: thymus tissue

text: line 72

text: thymus

characteristic: tissue


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: control

text: Gallus gallus

text: thymus tissue

text: line 72

text: thymus


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Rhinovirus B

characteristic: organism

text: Rhinovirus p1089_sR502_2008

characteristic: title


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Rhinovirus A

text: Rhinovirus p1105_sR2804_2008


text: live

text: Generic

text: Generic

text: Rhinovirus B

text: Rhinovirus p1077_sR401_2007


text: live

text: Generic

text: Generic

text: Rhinovirus C

text: Rhinovirus p1139_sR1051_2009


text: Shilatifard, Stowers Institute for Medical Research

text: live

text: Generic

text: rb-α-Jarid2 (Masamitsu Yamaguchi)

characteristic: antibody

text: wild type

characteristic: genotype/variation

text: Drosophila melanogaster

text: whole larvae

text: 3rd instar larvae


characteristic: External Id

text: live

text: Generic

text: rb-α-Su(z)12 full length (Jürg Müller)

characteristic: chip

text: wild type

text: Drosophila melanogaster

text: whole larvae

text: 3rd instar larvae


text: live

text: Generic

text: wild type

text: Drosophila melanogaster

text: whole larvae

text: 3rd instar larvae


text: live

text: Generic

text: rb-α-H3K27me3 (Active Motif, 39155)

text: wild type

text: Drosophila melanogaster

text: whole larvae

text: 3rd instar larvae


text: live

text: Generic

text: m-α-HA (Covance, MMS-101P)

text: wild type

text: Drosophila melanogaster

text: whole larvae

text: 3rd instar larvae


text: live

text: Generic

text: rb-α-Jarid2 (Masamitsu Yamaguchi)

text: Jarid2 mutant

text: Drosophila melanogaster

text: whole larvae

text: 3rd instar larvae


text: live

text: Generic

text: rb-α-Su(z)12 full length (Jürg Müller)

text: Jarid2 mutant

text: Drosophila melanogaster

text: whole larvae

text: 3rd instar larvae


text: live

text: Generic

text: Jarid2 mutant

text: Drosophila melanogaster

text: whole larvae

text: 3rd instar larvae


text: live

text: Generic

text: rb-α-H3K27me3 (Active Motif, 39155)

text: Jarid2 mutant

text: Drosophila melanogaster

text: whole larvae

text: 3rd instar larvae


text: live

text: Generic

text: m-α-HA (Covance, MMS-101P)

text: Jarid2 mutant

text: Drosophila melanogaster

text: whole larvae

text: 3rd instar larvae


text: live

text: Generic

text: rb-α-Su(z)12 full length (Jürg Müller)

text: wild type

text: Drosophila melanogaster

text: eye-antenna imaginal disc

text: eye-antanna imaginal discs


text: live

text: Generic

text: wild type

text: Drosophila melanogaster

text: eye-antenna imaginal disc

text: eye-antanna imaginal discs


text: live

text: Generic

text: rb-α-Su(z)12 full length (Jürg Müller)

text: Jarid2 mutant

text: Drosophila melanogaster

text: eye-antenna imaginal disc

text: eye-antanna imaginal discs


text: live

text: Generic

text: Jarid2 mutant

text: Drosophila melanogaster

text: eye-antenna imaginal disc

text: eye-antanna imaginal discs


text: live

text: Generic

text: Generic

text: Rhinovirus C

characteristic: strain

text: Rhinovirus p1278_s6331_1999


characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Rhinovirus B

text: Rhinovirus p1085_sR469_2008


characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Rhinovirus A

text: Rhinovirus p1187_sR2954_2009


characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Rhinovirus A

text: Rhinovirus p1152_sR1114_2009


text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Rhinovirus A

text: Rhinovirus p1109_sR642_2008


text: live

text: Generic

text: Generic

text: Rhinovirus C

text: Rhinovirus p1031_sR2724_2009


Drosophila persimilis

text: Duke University

text: live

text: Generic

characteristic: description

text: Drosophila persimilis

text: Drosophila persimilis MSH1993


name: Nucleosome mapping data for Wt and histone point mutant strains H3K4A,K36A and K79A

text: Pennsylvania State University

text: live

text: Generic

characteristic: NCBI submission model

text: Eucommia ulmoides

text: Nucleosome mapping data for Wt and histone point mutant strains H3K4A ,K36A and K79A and H2BK123A


text: Washington University, Genome Sequencing Center

text: live

text: Generic

characteristic: NCBI submission package

characteristic: sample id

characteristic: sample name

text: genomic dna

characteristic: sample type

text: Gauthier

text: Generic sample from Treponema pallidum subsp. pertenue str. Gauthier


Plasmodium cynomolgi Berok strain

text: New York University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Plasmodium cynomolgi strain Berok

characteristic: organism

text: Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade

characteristic: title


text: Central Institute of Freshwater Aquaculture

text: live

text: Generic

text: 1st strand cDNA was synthesized from total RNA of Rohu ovary by mint technique of Evrogen.The cDNA was amplified by advantage-2 polymerase mix of Clonetech. The resulting ds-cDNA was normalized according to Trimmer-Direct cDNA normalization procedure of Evrogen. The cDNA were cloned in TOPO TA cloning vector of Invitrogen and sequenced in ABI-3130xl Genetic Analyzer.

text: E.coli

characteristic: lab-host

text: Labeo rohita

text: pituitary

characteristic: tissue-type

text: Rohu pituitary library

text: plasmid

text: TOPO TA (Invitrogen)

characteristic: vector


characteristic: External Id

text: Shanghai Insititutes for Biological Sciences

text: live

text: Generic

characteristic: SRA accession

text: Cordyceps militaris

text: Genome sequencing of Cordyceps militaris


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Aspergillus brasiliensis CBS 101740

text: Aspergillus brasiliensis CBS 101740

text: CBS 101740

characteristic: strain

text: Generic sample from Aspergillus brasiliensis CBS 101740


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Aspergillus tubingensis CBS 134.48

characteristic: description

text: Aspergillus tubingensis CBS 134.48

text: CBS 134.48

text: Generic sample from Aspergillus tubingensis CBS 134.48


text: Univerity of Oslo

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Sample taken from the Troll plain, 5-20cm bsf. Latitude (N)- longitude (E): 60.631117 - 3.787293. Sediment type: Silty Clay.

text: marine sediment metagenome

text: Tplain


text: Univerity of Oslo

text: live

text: Generic

text: Sample taken from the Troll pockmark, 5-20cm bsf. Latitude (N)- longitude (E): 60.63132 - 3.789782. Sediment type: Silty Clay.

text: marine sediment metagenome


text: Univerity of Oslo

text: live

text: Generic

text: Sample taken from the Troll pockmark, 5-20cm bsf. Latitude (N)- longitude (E): 60.631441 - 3.790041. Sediment type: Silty Clay.

text: marine sediment metagenome


text: Univerity of Oslo

text: live

text: Generic

text: Sample taken from the Troll pockmark, 5-20cm bsf. Latitude (N)- longitude (E): 60.630721 - 3.78115. Sediment type: Silty Clay.

text: marine sediment metagenome


text: Univerity of Oslo

text: live

text: Generic

text: Sample taken from the Troll plain, 5-20cm bsf. Latitude (N)- longitude (E): 60.629635 - 3.782211. Sediment type: Silty Clay.

text: marine sediment metagenome


text: Univerity of Oslo

text: live

text: Generic

text: Sample taken from the seabed in the outer part of the Oslofjord (south of Dr*bak, Norway), 5-20cm bsf. Latitude (N)- longitude (E): 59.35660 - 10.37996. This area is characterized by Precambrian bedrock, formed more than 542 million years ago, and the presence of thermogenic hydrocarbons is therefore unlikely. Sediment type: Silty Clay.

text: marine sediment metagenome


text: Univerity of Oslo

text: live

text: Generic

text: Sample taken from the seabed in the outer part of the Oslofjord (south of Dr*bak, Norway), 5-20cm bsf. Latitude (N)- longitude (E): 59.37428 - 10.37580. This area is characterized by Precambrian bedrock, formed more than 542 million years ago, and the presence of thermogenic hydrocarbons is therefore unlikely. Sediment type: Silty Clay.

text: marine sediment metagenome


Lindenbergia philippensis

text: Ludwig-Maximilians-Universität München

text: live

text: Generic

text: Source: leaves

text: Lindenbergia philippensis

text: Lindenbergia philippensis (Cham. & Schltdl.) Benth.


PRJNA70759.Subject 1

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Homo sapiens

text: Subject 1

characteristic: sample name

text: Generic sample from Homo sapiens


PRJNA70759.Subject 2

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Homo sapiens

characteristic: organism

text: Subject 2

text: Generic sample from Homo sapiens


Schwalbea americana L.

text: Ludwig-Maximilians-Universität München

text: live

text: Generic

text: source: leaves

text: Schwalbea americana

text: Schwalbea americana L.

characteristic: title


Orobanche cumana

text: Ludwig-Maximilians-Universität München

text: live

text: Generic

text: source: flowers

text: Orobanche cernua var. cumana

text: Orobanche cumana (Wallr.) Beck


Orobanche crenata Forssk.

text: Ludwig-Maximilians-Universität München

text: live

text: Generic

text: source: flowers

text: Orobanche crenata

text: Orobanche crenata Forssk.


Phelipanche ramosa

text: Ludwig-Maximilians-Universität München

text: live

text: Generic

text: source: flowers

text: Phelipanche ramosa

text: Phelipanche ramosa (L.) Pomel


Phelipanche purpurea

text: Ludwig-Maximilians-Universität München

text: live

text: Generic

text: source: flowers

text: Phelipanche purpurea

text: Phelipanche purpurea (Jacq.) Sojak


Orobanche gracilis

text: Ludwig-Maximilians-Universität München

text: live

text: Generic

text: source: flowers, stems and leaves

text: Orobanche gracilis

text: Orobanche gracilis Beck


Phelipanche lavandulacea

text: Ludwig-Maximilians-Universität München

text: live

text: Generic

text: source: flowers, stems and leaves

text: Phelipanche lavandulacea

text: Phelipanche lavandulacea Pomel


text: UCSD

text: live

text: Generic

text: human foreskin fibroblasts (HFF)

characteristic: cell type

text: Homo sapiens

text: mock infected

characteristic: treatment


characteristic: External Id

text: UCSD

text: live

text: Generic

text: human foreskin fibroblasts (HFF)

text: Homo sapiens

text: HCMV infected


text: Neuroscience, UT Southwestern Medical Center

text: live

text: Generic

characteristic: SRA accession

text: hippocampus

characteristic: brain region

characteristic: isolate

text: Homo sapiens

text: human, hippocampus


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: frontal pole

text: Homo sapiens

text: human, frontal pole


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: caudate nucleus

text: Homo sapiens

text: human, caudate nucleus


text: live

text: Generic

characteristic: NCBI submission model

text: frontal pole

text: Macaca mulatta

text: macaque, frontal pole


text: live

text: Generic

characteristic: NCBI submission package

text: caudate nucleus

text: Macaca mulatta

text: macaque, caudate nucleus


text: live

text: Generic

text: hippocampus

text: Macaca mulatta

text: macaque, hippocampus


text: live

text: Generic

text: frontal pole

text: Pan troglodytes

text: chimp, frontal pole


text: live

text: Generic

text: caudate nucleus

text: Pan troglodytes

text: chimp, caudate nucleus


text: live

text: Generic

text: hippocampus

text: Pan troglodytes

text: chimp, hippocampus


text: Trudy Mackay, Biological Sciences / Genetics, North Carolina State University

text: live

text: Generic

text: Macrophage

text: HDAC3 (Abcam, ab7030)

characteristic: chip antibody

text: None/WT

characteristic: mutation

text: Mus musculus

text: BSA HDAC3

characteristic: strain

text: Bone Marrow

characteristic: tissue

text: BSA HDAC3

text: BSA


characteristic: INSDC secondary accession

text: live

text: Generic

text: Macrophage

text: HDAC3 (Abcam, ab7030)

text: None/WT

text: Mus musculus

characteristic: organism

text: IL4 HDAC3

text: Bone Marrow

text: IL4 HDAC3

characteristic: title


characteristic: External Id

text: live

text: Generic

text: Macrophage

characteristic: cell type

text: H3K9Ac (Upstate Biotechnologies, 06-942)

text: HDAC3 floxed

text: Mus musculus

text: Control No Treat H3K9Ac

text: Bone Marrow

text: Control No Treat H3K9Ac

text: BSA

characteristic: treatment


text: live

text: Generic

characteristic: SRA accession

text: Macrophage

text: HDAC3 floxed

text: Mus musculus

text: Control IL4 H3K9Ac

text: Bone Marrow

text: Control IL4 H3K9Ac


characteristic: INSDC center name

text: live

text: Generic

text: Macrophage

text: LysM Cre+, HDAC3 floxed

text: Mus musculus

text: HDAC3KO No Treat H3K9Ac

text: Bone Marrow

text: HDAC3KO No Treat H3K9Ac

text: BSA


characteristic: INSDC first public

text: live

text: Generic

text: Macrophage

text: LysM Cre+, HDAC3 floxed

text: Mus musculus

text: HDAC3KO IL4 H3K9Ac

text: Bone Marrow

text: HDAC3KO IL4 H3K9Ac


characteristic: INSDC last update

text: live

text: Generic

text: Macrophage

text: input

text: equal mix of Sample 3-6

text: Mus musculus

text: Input Macrophage Pool

text: Bone Marrow

text: Input Macrophage Pool

text: equal mix of Sample 3-6


text: Embrapa Recursos Geneticos e Biotecnologia

text: live

characteristic: INSDC status

text: Generic

text: As part of the Genolyptus Project, xylem was collected by scraping the exposed vascular tissue after the removal of the 0.5-1 cm-tick stem bark from 4-year-old E. pellita trees located in commercial plantations of Veracel Celulose S.A. (Eunapolis, BA, Brazil). Total RNA was extracted from 100-200 mg of tissues previously pulverized in mortars with pestles and liquid nitrogen using the PureLink Plant RNA Reagent Kit (Invitrogen) according to the multi-miniprep protocol instructions of the manufacturer. Polyadenylated RNA was subsequently purified from total RNA using the Oligotex mRNA Mini kit (Qiagen). RNA purity and quality were checked by both agarose gel electrophoresis and spectrophotometric measurements at 260 and 280 nm. Complementary DNA libraries were constructed using 1-5 ug mRNA and kits of the Superscript Plasmid System with Gateway Technology for cDNA Synthesis and Cloning (Invitrogen) and instructions of the manufacturer. Eluted fractions of double-stranded cDNA were stored at -20 deg C and further ligated into pSport1 (Invitrogen). Ligated products were transformed into Escherichia coli Electromax DH10B competent cells (Invitrogen) using a Gene Pulser ll Electroporation System (Bio-Rad).

characteristic: description

text: Four-year-old adult tree

characteristic: dev-stage

text: Escherichia coli DH10B

characteristic: lab-host

text: Trunk (stem)

characteristic: organ

text: Eucalyptus pellita

text: SaII

text: NotI

text: Xylem vascular tissue, differentiating (EUPE-XY)

text: plasmid

characteristic: vector


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: As part of the Genolyptus Project, xylem was collected by scraping the exposed vascular tissue after the removal of the 0.5-1 cm-tick stem bark from 4-year-old E. urophylla trees located in commercial plantations of Veracel Celulose S.A. (Eunapolis, BA, Brazil). Total RNA was extracted from 100-200 mg of tissues previously pulverized in mortars with pestles and liquid nitrogen using the PureLink Plant RNA Reagent Kit (Invitrogen) according to the multi-miniprep protocol instructions of the manufacturer. Polyadenylated RNA was subsequently purified from total RNA using the Oligotex mRNA Mini kit (Qiagen). RNA purity and quality were checked by both agarose gel electrophoresis and spectrophotometric measurements at 260 and 280 nm. Complementary DNA libraries were constructed using 1-5 ug mRNA and kits of the Superscript Plasmid System with Gateway Technology for cDNA Synthesis and Cloning (Invitrogen) and instructions of the manufacturer. Eluted fractions of double-stranded cDNA were stored at -20 deg C and further ligated into pSport1 (Invitrogen). Ligated products were transformed into Escherichia coli Electromax DH10B competent cells (Invitrogen) using a Gene Pulser ll Electroporation System (Bio-Rad).

text: Four-year-old adult tree

text: Escherichia coli DH10B

text: Trunk (stem)

text: Eucalyptus urophylla

text: SaII

text: NotI

text: Xylem vascular tissue, differentiating (EUUR-XY)

text: plasmid


text: University of Cape Town

text: live

text: Generic

text: Total RNA was extracted from pools of dehydrating leaves at the following RWCs; 100%, 89%, 63%, 53%, 48%, 27%, 6%. 100ug from each pool was added together. mRNA was purified from 700 ug of this pooled RNA using the poly(A+) tract mRNA isolation kit. The leaf dehydration library was prepared from 5ug of poly(A+) mRNA using the ZAP cDNA synthesis kit in which cDNAs were generated using a hybrid oligo(dT) linker-primer with an XhoI site. The cDNAs were directionally cloned into the UniZAP XR Lambda phage vector. pBlueScript phagemids were excised from the UniZAP-XR vector using the ExAssist helper phage. The library was normalized to reduce levels of redundancy as described by Collett et al 2004 Physiologia Plantarum 122:39-53

text: E. coli DH10B

text: Dehydrating Leaf

text: Xerophyta humilis

characteristic: organism

text: XhoI

text: Leaf Dehydration (LD)

text: Phagemid

text: pBluescript SK


text: University of Cape Town

text: live

text: Generic

text: Total RNA was extracted from pools of rehydrating leaves at the following RWCs; 5%, 17%, 30%, 47%, 78%, 90%, 100%. 100ug from each pool was added together. mRNA was purified from 700 ug of this pooled RNA using the poly(A+) tract mRNA isolation kit. The leaf rehydration library was prepared from 5ug of poly(A+) mRNA using the ZAP cDNA synthesis kit in which cDNAs were generated using a hybrid oligo(dT) linker-primer with an XhoI site. The cDNAs were directionally cloned into the UniZAP XR Lambda phage vector. pBlueScript phagemids were excised from the UniZAP-XR vector using the ExAssist helper phage. The library was normalized to reduce levels of redundancy as described by Collett et al 2004 Physiologia Plantarum 122:39-53

text: E. coli DH10B

text: Rehydrating Leaf

text: Xerophyta humilis

text: XhoI

text: Leaf Rehydration (LR)

characteristic: title

text: Phagemid

text: pBluescript SK


characteristic: External Id

text: University of Cape Town

text: live

text: Generic

text: Total RNA was extracted from pools of dehydrating roots at the following RWCs; 100%, 75%, 71%, 57%, 33%, 28%, 8%. 100ug from each pool was added together. mRNA was purified from 700 ug of this pooled RNA using the poly(A+) tract mRNA isolation kit. The root dehydration library was prepared from 5ug of poly(A+) mRNA using the ZAP cDNA synthesis kit in which cDNAs were generated using a hybrid oligo(dT) linker-primer with an XhoI site. The cDNAs were directionally cloned into the UniZAP XR Lambda phage vector. pBlueScript phagemids were excised from the UniZAP-XR vector using the ExAssist helper phage. The library was normalized to reduce levels of redundancy as described by Collett et al 2004 Physiologia Plantarum 122:39-53

text: E. coli DH10B

text: Dehydrating Root

text: Xerophyta humilis

text: XhoI

text: Root Dehydration (RD)

text: Phagemid

text: pBluescript SK


text: University of Cape Town

text: live

text: Generic

text: Total RNA was extracted from pools of rehydrating roots at the following RWCs; 5%, 36%, 62%, 76%, 86%, 100% (12hrs post watering), 100% (24hrs post watering). 100ug from each pool was added together. mRNA was purified from 700 ug of this pooled RNA using the poly(A+) tract mRNA isolation kit. The root rehydration library was prepared from 5ug of poly(A+) mRNA using the ZAP cDNA synthesis kit in which cDNAs were generated using a hybrid oligo(dT) linker-primer with an XhoI site. The cDNAs were directionally cloned into the UniZAP XR Lambda phage vector. pBlueScript phagemids were excised from the UniZAP-XR vector using the ExAssist helper phage. The library was normalized to reduce levels of redundancy as described by Collett et al 2004 Physiologia Plantarum 122:39-53

text: E. coli DH10B

text: Rehydrating Roots

text: Xerophyta humilis

text: XhoI

text: Root Rehydration (RR)

text: Phagemid

text: pBluescript SK


text: Faculty of Biology, Plant Physiology

text: live

text: Generic

text: Tissues were selected, ground and RNA extracted followed by cDNA synthesis.

text: Seed

text: Lepidium sativum

text: Radicle, Micropylar endosperm

characteristic: tissue-type

text: Lepidium sativum pectin methylesterases and pectin methylesterases inhibitors


text: ECORC, Agriculture and Agri-Food Canada

text: live

text: Generic

text: Sun II

characteristic: cultivar

text: Previously-isolated plasmid clones from the library reported by Chen and Armstrong (1995) were obtained from the authors. These clones had been derived from micro-dissected intact metaphase copies of chromosome 18D, and DNA from the selected chromosomes had been digested and amplified based on Sau3A linker adaptors. The vector is pGEM-4Z, recombinant plasmids were isolated using boiling lysis and inserts were released by digestion with EcoRI.inserts were prepared by PCR amplification using M13 pUC forward/reverse primers. Escherichia coli cells containing plasmids from a 2 mL overnight culture were pelleted, re-suspended in 200 uL of 10 mM MgSO4-7H2O, incubated at 100 deg C for 10 min in a heat block, centrifuged, and stored at -20 deg C. Five microlitres of the supernatant was used as DNA template for 50 uL of PCR reaction (5 uL of 10× PCR buffer minus Mg++, 1 uL of 10 mM dNTP mixture, 1.5 uL of 50 Mm Mg Cl2, 2.5 uL of 10 µM each Primer, 0.3 uL of 5 U/uL of Taq DNA Polymerase, and distilled water to 50 uL). After complete denaturation Template DNA of 94 deg C for 3 min, PCR was performed with 30 cycles of 45 s at 94 deg C, 30 s at 55 deg C, 1 min at 72 deg C, followed by a final extention at 72deg C for 10 min. The amplified insert size was estimated in a 2% agarose gel using Gene Direx 100bp DNA Ladder H3 RTU as marker. Each insert with 20 - 30 ng/uL were used for sequencing.

text: Avena sativa

text: Chromosome 18D genomic library from hexaploid oat


text: Dr. Craft, Dermatology, LABIOMED

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Localized cutaneous leishmaniasis

characteristic: clinical form

text: Homo sapiens

text: Leishmania braziliensis

characteristic: parasite

text: skin lesion

text: skin

characteristic: tissue


text: Dr. Craft, Dermatology, LABIOMED

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Mucosal leishmaniasis

text: Homo sapiens

text: Leishmania braziliensis

text: skin lesion

text: skin


text: Center for Environmental Genomics

text: live

text: Generic

text: Approximately 90L of surface seawater was collected from off the beach at Golden Gardens Park, Seattle, WA, USA (47.6906558, -122.404411), on 17-JUN-2008. The &lt; 0.8um size fraction was targeted with pre-filtering followed by concentration with tangential flow filtration.

characteristic: description

text: marine metagenome

text: Golden Gardens 1


text: Center for Environmental Genomics

text: live

text: Generic

characteristic: NCBI submission model

text: Approximately 90L of surface seawater was collected from off the beach at Golden Gardens Park, Seattle, WA, USA (47.6906558, -122.404411), on 10-OCT-2008. The &lt; 0.8um size fraction was targeted with pre-filtering followed by concentration with tangential flow filtration.

text: marine metagenome

text: Golden Gardens 2


text: Center for Environmental Genomics

text: live

text: Generic

characteristic: NCBI submission package

text: Approximately 90L of surface seawater was collected from off the beach at Golden Gardens Park, Seattle, WA, USA (47.6906558, -122.404411), on 04-MAY-2009. The &lt; 0.8um size fraction was targeted with pre-filtering followed by concentration with tangential flow filtration.

text: marine metagenome

text: Golden Gardens 3


text: Dept. of Biology, California State Polytechnic University Pomona

text: live

text: Generic

text: transformed with sequence containing Mos TIRs and Hermes transposase

characteristic: colony transformation line

text: Aedes aegypti

characteristic: organism

text: whole adult

text: Orlando

characteristic: strain

characteristic: technical replicate number

text: whole organism

text: Aedes pMosA5D rep1

characteristic: treatment


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

text: Aedes aegypti

text: whole adult

text: Orlando

text: whole organism

text: Aedes pMosA5D rep2

characteristic: title

text: sequence containing Mos TIRs and Hermes transposase


text: live

text: Generic

characteristic: SRA accession

text: transformed with sequence containing piggyBac TIRs and Mos transposase

text: Aedes aegypti

text: whole adult

text: Orlando

text: whole organism

text: Aedes p3EB2Mos rep1


text: live

text: Generic

text: Aedes aegypti

text: whole adult

text: Orlando

text: whole organism

characteristic: tissue

text: Aedes p3EB2Mos rep2

text: sequence containing piggyBac TIRs and Mos transposase


characteristic: INSDC center name

text: live

text: Generic

text: not transformed

text: Aedes aegypti

text: whole adult

text: Orlando

text: whole organism

text: Aedes wild


characteristic: INSDC first public

text: live

text: Generic

text: Transformed with an intact Hermes element

text: Aedes aegypti

text: whole adult

text: Orlando

text: whole organism

text: Aedes auto-Hermes257

text: an intact Hermes element


characteristic: INSDC last update

text: live

text: Generic

text: Transformed with sequence containing Mos TIRs and piggyBac transposase

text: Aedes aegypti

text: whole adult

text: Orlando

text: whole organism

text: Aedes pMos3DB2pBac


text: live

characteristic: INSDC status

text: Generic

text: Drosophila melanogaster

text: whole adult

text: csW+

text: whole organism

text: Drosophila auto-Hermes

text: an intact Hermes element


name: Cynoglossus semilaevis transcriptome reads

text: Beijing Genome Institute

text: live

text: Generic

text: Cynoglossus semilaevis


text: Max-Delbrueck-Center

text: live

text: Generic

characteristic: cultivation temperature

text: young adult

characteristic: developmetal stage

text: Caenorhabditis elegans

text: nematode whole worm

text: BS1080 (GLD-1::GFP::FLAG)


name: Nucleosome mapping in Ubiquitylation deficient muatnts

text: Pennsylvania State University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Eucommia ulmoides


name: K36me modfified nulcoeomes in Wt and K123A

text: Pennsylvania State University

text: live

text: Generic

text: H3K36me3 and me2 modified nucleosomes in wild type and H2BK123A strains.

characteristic: description

text: Eucommia ulmoides

characteristic: organism

text: K36me modified nulcoeomes in Wt and K123A


text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Pseudomonas aeruginosa PA14 grown in LB at 37*C, 180 rpm shaking up to an OD600 of 2.0

text: Pseudomonas aeruginosa PA14

characteristic: strain


text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Pseudomonas aeruginosa PA14 grown in LB at 37*C, 180 rpm for 12h.

text: Pseudomonas aeruginosa PA14


text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Pseudomonas aeruginosa PA14 grown in LB at 37*C, 180 rpm shaking for 12h.

text: Pseudomonas aeruginosa PA14


text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Pseudomonas aeruginosa PA14 grown in LB at 37*C in 96-well plates for 24h.

text: Pseudomonas aeruginosa PA14


text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Pseudomonas aeruginosa PA14 grown in LB at 37*C in 96-well plates for 48h.

text: Pseudomonas aeruginosa PA14


text: Institut Curie

text: live

text: Generic

text: Spleen-derived Spi-1-transgenic erythroleukemic cells

characteristic: cell type

characteristic: chip antibody

text: Mus musculus


characteristic: External Id

text: Institut Curie

characteristic: INSDC secondary accession

text: live

text: Generic

text: RNApolII

text: Mus musculus


text: Institut Curie

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: Input

text: Input

characteristic: title


text: Institut Curie

characteristic: INSDC center name

text: live

text: Generic

text: non-specific IgG

text: Mus musculus

text: IgG

text: IgG


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC first public

text: live

text: Generic

text: Auricularia delicata TFB10046 SS-5

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Auricularia subglabra TFB-10046 SS5

text: TFB10046 SS-5

text: Generic sample from Auricularia delicata TFB-10046 SS5


text: University of Connecticut

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: Mouse Neonatal (P0) Whole Brain - 40,XX


text: University of Connecticut

text: live

text: Generic

characteristic: NCBI submission model

text: Mus musculus

text: Mouse Neonatal (P0) Whole Brain - 40,XY


text: University of Connecticut

text: live

text: Generic

characteristic: NCBI submission package

text: Mus musculus

text: Mouse Neonatal (P0) Whole Brain - 39,XmO


text: University of Connecticut

text: live

text: Generic

text: Mus musculus

text: Mouse Neonatal (P0) Whole Brain - 39,XpO


Akata Uninduce Cytoplasmic RNA-seq

text: Tulane Cancer Center

text: live

text: Generic

text: The cytoplasmic fraction of Akata cells that are derived from an EBV genome-positive Burkitt's lymphoma from a Japanese patient, have a chromosome translocation, t(8:14), and express surface immunoglobulin of the G class. (Takada K. 1984)

characteristic: description

text: Homo sapiens

text: Identification of new viral genes and transcript isoforms during Epstein-Barr virus reactivation using RNA-seq.


Akata Induce Cytoplasmic RNA-seq

text: Tulane Cancer Center

text: live

text: Generic

text: Cytoplasmic fraction following BCL activation of Akata cells that are derived from an EBV genome-positive Burkitt's lymphoma from a Japanese patient, have a chromosome translocation, t(8:14), and express surface immunoglobulin of the G class. (Takada K. 1984)

text: Homo sapiens

characteristic: organism


Akata Nuclear Uninduced

text: Tulane Cancer Center

text: live

text: Generic

text: Nuclear fraction of Akata cells that are derived from an EBV genome-positive Burkitt's lymphoma from a Japanese patient, have a chromosome translocation, t(8:14), and express surface immunoglobulin of the G class. (Takada K. 1984)

text: Homo sapiens


Akata Induce Nuclear RNA-seq

text: Tulane Cancer Center

text: live

text: Generic

text: Nuclear fraction following BCL activation of Akata cells that are derived from an EBV genome-positive Burkitt's lymphoma from a Japanese patient, have a chromosome translocation, t(8:14), and express surface immunoglobulin of the G class. (Takada K. 1984)

text: Homo sapiens


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Vibrio cholerae HC-46B1

characteristic: strain

text: Vibrio cholerae HC-46B1


text: live

text: Generic

text: Vibrio cholerae HC-37A1

text: Vibrio cholerae HC-37A1


text: ENCODE DCC

text: live

text: Generic

text: Lonza

characteristic: biomaterial provider

characteristic: biorep

text: U

characteristic: cell sex

text: RnaPet

characteristic: datatype

text: RNA Paired-End Tags

characteristic: datatype description

characteristic: labexpid

text: clone-free

characteristic: labversion

text: nucleus

characteristic: localization

text: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA

characteristic: localization description

text: Homo sapiens

characteristic: readtype

text: Paired 36 nt reads

characteristic: readtype description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description

text: HUVEC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: RnaPet

text: RNA Paired-End Tags

text: clone-based

text: cell

text: Whole cell

text: Homo sapiens

characteristic: organism

text: Paired 36 nt reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: prostate

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: F

characteristic: cell sex

text: RnaPet

characteristic: datatype

text: RNA Paired-End Tags

characteristic: datatype description

characteristic: labexpid

text: clone-based

characteristic: labversion

text: nucleolus

characteristic: localization

text: The part of the nucleus where ribosomal RNA is actively transcribed

characteristic: localization description

text: Homo sapiens

characteristic: readtype

text: Paired 36 nt reads

text: tier 1

text: total

text: Total RNA extract (longer than 200 nt)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Lonza

text: U

text: RnaPet

text: RNA Paired-End Tags

text: clone-free

text: cytosol

text: The fluid between the cells outer membrane and the nucleus

text: Homo sapiens

text: Paired 36 nt reads

characteristic: readtype description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description

text: NHEK


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

characteristic: biorep

text: U

characteristic: cell sex

text: RnaPet

characteristic: datatype

text: RNA Paired-End Tags

text: clone-free

text: nucleus

text: Homo sapiens

characteristic: organism

text: Paired 36 nt reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: NHEK

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

text: F

text: RnaPet

text: RNA Paired-End Tags

characteristic: datatype description

characteristic: labexpid

text: clone-based

characteristic: labversion

text: nucleoplasm

characteristic: localization

text: That part of the nuclear content other than the chromosomes or the nucleolus

characteristic: localization description

text: Homo sapiens

characteristic: readtype

text: Paired 36 nt reads

text: tier 1

text: total

text: Total RNA extract (longer than 200 nt)


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: RnaPet

text: RNA Paired-End Tags

text: clone-based

text: cytosol

text: Homo sapiens

text: Paired 36 nt reads

characteristic: readtype description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: F

characteristic: cell sex

text: RnaPet

characteristic: datatype

text: RNA Paired-End Tags

characteristic: datatype description

text: clone-based

text: nucleus

text: Homo sapiens

characteristic: organism

text: Paired 36 nt reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: F

text: RnaPet

text: RNA Paired-End Tags

characteristic: labexpid

text: clone-based

characteristic: labversion

text: polysome

characteristic: localization

text: Strand of mRNA with ribosomes attached

characteristic: localization description

text: Homo sapiens

characteristic: readtype

text: Paired 36 nt reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

text: F

text: RnaPet

text: RNA Paired-End Tags

text: clone-free

text: cell

text: Whole cell

text: Homo sapiens

text: Paired 36 nt reads

characteristic: readtype description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ATCC

characteristic: biorep

text: hepatocellular carcinoma

characteristic: cell description

text: RnaPet

characteristic: datatype

text: RNA Paired-End Tags

characteristic: datatype description

text: clone-based

text: nucleus

text: Homo sapiens

characteristic: organism

text: Paired 36 nt reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: WiCell Research Institute

text: M

characteristic: cell sex

text: RnaPet

text: RNA Paired-End Tags

characteristic: labexpid

text: clone-free

characteristic: labversion

text: cell

characteristic: localization

text: Whole cell

characteristic: localization description

text: Homo sapiens

characteristic: readtype

text: Paired 36 nt reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: F

text: RnaPet

text: RNA Paired-End Tags

text: clone-free

text: cytosol

text: Homo sapiens

text: Paired 36 nt reads

characteristic: readtype description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: RnaPet

characteristic: datatype

text: RNA Paired-End Tags

characteristic: datatype description

text: clone-based

text: nucleus

text: Homo sapiens

characteristic: organism

text: Paired 36 nt reads

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ATCC

characteristic: biomaterial provider

text: F

characteristic: cell sex

text: RnaPet

text: RNA Paired-End Tags

characteristic: labexpid

text: clone-based

characteristic: labversion

text: chromatin

characteristic: localization

text: Nuclear DNA and associated proteins

characteristic: localization description

text: Homo sapiens

characteristic: readtype

text: Paired 36 nt reads

text: tier 1

text: total

text: Total RNA extract (longer than 200 nt)


name: Pol II occupancy in wild type and H2BK123A

characteristic: External Id

text: Pennsylvania State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: Eucommia ulmoides


name: Nucleosome mapping in various strains (biological replicates)

text: Pennsylvania State University

text: live

text: Generic

text: Eucommia ulmoides

characteristic: organism

characteristic: title


text: David Morton, Integrative Biosciences, OHSU

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 3rd instar larva

characteristic: developmental stage

characteristic: genotype

text: Drosophila melanogaster

text: central nervous system, TBPH knockout

text: central nervous system

characteristic: tissue

text: TBPH_mutant_RNAseq, 1


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 3rd instar larva

text: Drosophila melanogaster

text: central nervous system, TBPH overexpression

text: central nervous system

text: TBPH_overexpressed_RNAseq, 1


text: live

text: Generic

text: 3rd instar larva

text: Drosophila melanogaster

text: central nervous system

text: TBPH_overexpressed_RNAseq, 2


text: live

text: Generic

text: 3rd instar larva

text: Drosophila melanogaster

text: central nervous system, LacZ expression control

text: central nervous system

text: LacZ_control_RNAseq, 1


text: live

text: Generic

text: 3rd instar larva

text: Drosophila melanogaster

text: central nervous system, TBPH knockout

text: central nervous system

text: TBPH_mutant_RNAseq, 2


text: live

text: Generic

text: 3rd instar larva

text: Drosophila melanogaster

text: central nervous system, control

text: central nervous system

text: control_RNAseq, 1


text: live

text: Generic

text: 3rd instar larva

text: Drosophila melanogaster

text: central nervous system

text: LacZ_control_RNAseq, 2


text: live

text: Generic

text: 3rd instar larva

text: G2; TBPH>TBPH

text: Drosophila melanogaster

text: central nervous system, TBPH rescue

text: central nervous system

text: rescue_RNAseq, 1


text: live

text: Generic

text: 3rd instar larva

text: Drosophila melanogaster

text: central nervous system, TBPH knockout

text: central nervous system

text: TBPH_mutant_RNAseq, 3


text: live

text: Generic

text: 3rd instar larva

text: G2; TBPH>TBPH

text: Drosophila melanogaster

text: central nervous system, TBPH rescue

text: central nervous system

text: rescue_RNAseq, 2


text: live

text: Generic

text: 3rd instar larva

text: Drosophila melanogaster

text: central nervous system

text: TBPH_overexpressed_RNAseq, 3


text: live

text: Generic

text: 3rd instar larva

text: Drosophila melanogaster

text: central nervous system, control

text: central nervous system

text: control_RNAseq, 2


text: live

text: Generic

text: 3rd instar larva

text: Drosophila melanogaster

text: central nervous system

text: LacZ_control_RNAseq, 3


text: live

text: Generic

text: 3rd instar larva

text: Drosophila melanogaster

text: central nervous system, control

text: central nervous system

text: control_RNAseq, 3


name: Nucleosome mapping in Ubiquitylation deficient mutants (Biological replicates)

text: Pennsylvania State University

text: live

text: Generic

text: Eucommia ulmoides


text: Stunnenberg, Molecular Biology, Radboud University, Nijmegen Center for Molecular Life Sciences

text: live

text: Generic

characteristic: binding protein

text: Diagenode

characteristic: binding protein vendor

text: Protein domain His6-GST-MBD (Diagenode)

characteristic: binding/selection

text: high

characteristic: eluate

text: Homo sapiens

text: BioChain (lot# A704198). Both normal and tumor samples originate from the same donor, an 81-year-old male patient diagnosed with moderately differentiated adenocarcinoma

characteristic: sample type

text: normal colon tissue

text: MethylCap-bisulfite sequencing

characteristic: technique

text: normal colon tissue

text: colon normal high MethylCap-BS


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Diagenode

text: Protein domain His6-GST-MBD (Diagenode)

text: high

text: Homo sapiens

text: tumor colon tissue

text: MethylCap-bisulfite sequencing

text: tumor colon tissue

text: colon tumor high MethylCap-BS


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

text: Millipore

characteristic: antibody vendor

text: Antibody H3K27me3 (Millipore 07-449, DAM-1588246)

characteristic: cell line

text: Homo sapiens

characteristic: organism

text: human colon carcinoma cell line established from the primary colon carcinoma of an adult man

text: ChIP-bisulfite sequencing

text: HCT116 H3K27me3-ChIP-BS

characteristic: title


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Millipore

text: Homo sapiens

text: ChIP-sequencing

text: HCT116 H3K27me3-ChIP


text: live

text: Generic

text: Diagenode

text: Antibody H3K4me3 (Diagenode)

characteristic: binding/selection

text: Homo sapiens

text: ChIP-sequencing

text: HCT116 H3K4me3-ChIP


text: live

text: Generic

characteristic: binding protein

text: Diagenode

characteristic: binding protein vendor

text: Protein domain His6-GST-MBD (Diagenode)

text: low

characteristic: eluate

text: Homo sapiens

characteristic: sample type

text: ChIP-sequencing

text: HCT116 low MethylCap


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Diagenode

text: Protein domain His6-GST-MBD (Diagenode)

text: medium

text: Homo sapiens

text: ChIP-sequencing

characteristic: technique

text: HCT116 medium MethylCap


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Diagenode

text: Protein domain His6-GST-MBD (Diagenode)

text: high

text: Homo sapiens

text: ChIP-sequencing

text: HCT116 high MethylCap


text: live

text: Generic

text: Fragmentented & 2x Poly(A) selected ds-cDNA

characteristic: cell line

text: Homo sapiens

characteristic: organism

text: ds-cDNA-sequencing

text: HCT116 RNAseq


text: live

characteristic: INSDC status

text: Generic

characteristic: antibody

text: Millipore

characteristic: antibody vendor

text: Mus musculus

text: Embryonic stem cells

characteristic: origin

text: Embryonic stem cells

text: ChIP-bisulfite sequencing

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Millipore

text: Mus musculus

text: Embryonic stem cells

text: Embryonic stem cells

text: ChIP-sequencing


text: live

text: Generic

characteristic: binding protein

text: Diagenode

characteristic: binding protein vendor

text: Mus musculus

text: Embryonic stem cells

text: Embryonic stem cells

text: MethylCap-sequencing


characteristic: External Id

text: EMBL Grenoble Outstation

characteristic: INSDC center name

text: live

text: Generic

characteristic: developmental stage

text: wildtype, Miwi +/+

characteristic: genotype/variation

text: Mus musculus

text: Testes, P14 Miwi +/+

characteristic: strain

text: Testes

characteristic: tissue

text: Testes, P14 Miwi +/+ [MR09]


text: EMBL Grenoble Outstation

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: wildtype, Miwi +/+

text: Mus musculus

text: Testes, P20 Miwi +/+

text: Testes

text: Testes, P20 Miwi +/+ [MR10]


text: EMBL Grenoble Outstation

text: live

characteristic: INSDC status

text: Generic

text: Adult

text: wildtype, Miwi +/+

text: Mus musculus

characteristic: organism

text: Testes, Adult Miwi +/+

text: Testes

text: Testes, Adult Miwi +/+ [MR11]


text: EMBL Grenoble Outstation

text: live

text: Generic

text: Adult

text: Miwi +/ADH

text: Mus musculus

text: Testes, Adult Miwi +/ADH

text: Testes

text: Testes, Adult Miwi +/ADH [MR19]

characteristic: title


text: EMBL Grenoble Outstation

text: live

text: Generic

characteristic: NCBI submission model

text: Adult

text: Miwi -/ADH

text: Mus musculus

text: Testes, Adult Miwi -/ADH

text: Testes

text: Testes, Adult Miwi -/ADH [MR25]


text: EMBL Grenoble Outstation

text: live

text: Generic

characteristic: NCBI submission package

text: Adult

text: Miwi -/ADH

text: Mus musculus

text: Testes, Adult Miwi -/ADH

text: Testes

text: Testes, Adult Miwi -/ADH [MR70]


text: EMBL Grenoble Outstation

text: live

text: Generic

text: Adult

text: Miwi -/ADH

text: Mus musculus

text: Testes, Adult Miwi -/ADH

text: Testes

text: Testes, Adult Miwi -/ADH [MR71]


text: EMBL Grenoble Outstation

text: live

text: Generic

text: Adult

text: Miwi +/-

text: Mus musculus

text: Global 5' RACE +/-

text: Testes

text: Global 5' RACE +/- [MR97]


text: EMBL Grenoble Outstation

text: live

text: Generic

text: Adult

text: Miwi -/ADH

text: Mus musculus

text: Global 5' RACE -/ADH

text: Testes

text: Global 5' RACE -/ADH [MR99]


text: EMBL Grenoble Outstation

text: live

text: Generic

text: Adult

text: Miwi +/-

text: Mus musculus

text: Testes, Adult Miwi +/-

text: Testes

text: Testes, Adult Miwi +/- [MR66]


text: EMBL Grenoble Outstation

text: live

text: Generic

text: Adult

text: Miwi +/ADH

text: Mus musculus

text: Testes, Adult Miwi +/ADH

text: Testes

text: Testes, Adult Miwi +/ADH [MR67]


text: EMBL Grenoble Outstation

text: live

text: Generic

text: Adult

text: Miwi -/ADH

text: Mus musculus

text: Testes, Adult Miwi -/ADH

text: Testes

text: Testes, Adult Miwi -/ADH [MR68]


text: University of Montreal

text: live

text: Generic

text: thymocyte

characteristic: cell type

text: mixed C57BL/6, LckCre transgenic, Gt(ROSA)26Sortm4(ACTB-tdTomato,-EGFP)Luo and CD45.1

characteristic: genetic background

text: wild type

characteristic: genotype

text: Mus musculus

text: wt mouse

text: wt mouse 1


characteristic: External Id

text: University of Montreal

characteristic: INSDC center name

text: live

text: Generic

text: thymocyte

text: hnRNP L KO

text: Mus musculus

text: hnRNP L KO mouse

text: hnRNP L KO mouse 1


text: University of Montreal

text: live

text: Generic

text: thymocyte

text: hnRNP L KO

text: Mus musculus

text: hnRNP L KO mouse

text: hnRNP L KO mouse 2


text: University of Montreal

text: live

text: Generic

text: thymocyte

text: wild type

text: Mus musculus

text: wt mouse

text: wt mouse 2


text: Cohen Lab, Genetics Department, Stanford University

text: live

text: Generic

text: yeast

text: Saccharomyces cerevisiae

text: yeast

text: Yeast WT-1


text: live

text: Generic

text: yeast

text: Saccharomyces cerevisiae

text: yeast

text: Yeast WT-2


text: live

text: Generic

text: yeast

text: Saccharomyces cerevisiae

text: yeast

text: Yeast Spt4 Del-1


text: live

text: Generic

text: yeast

text: Saccharomyces cerevisiae

text: yeast

text: Yeast Spt4 Del-2


text: live

text: Generic

text: striatal neural cells

text: Mus musculus

text: striatal neural cells

text: mouse siCtr

text: Control

characteristic: transfection


text: live

text: Generic

text: striatal neural cells

text: Mus musculus

text: striatal neural cells

text: mouse siSupt4h


text: live

text: Generic

text: striatal neural cells

text: Rattus norvegicus

text: striatal neural cells

text: rat siCtr

text: Control


text: live

text: Generic

text: striatal neural cells

text: Rattus norvegicus

text: striatal neural cells

text: rat siSupt4h


text: Department of Environmental Toxicology, Eawag

text: live

text: Generic

text: wild type

text: single-end

characteristic: library type

text: TAP

characteristic: medium

text: Chlamydomonas reinhardtii

characteristic: sequencing cycles / read length

text: Chlamydomonas cultured cells

characteristic: strain

text: Chlamydomonas reinhardtii 4A+ wild-type


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: sor1 mutant

text: single-end

text: TAP

text: Chlamydomonas reinhardtii

text: Chlamydomonas cultured cells

text: Chlamydomonas reinhardtii sor1 mutant


text: Max-Delbrueck-Center

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

characteristic: cultivation temperature

text: young adult

characteristic: developmetal stage

characteristic: genotype/variation

text: Caenorhabditis elegans

characteristic: organism

text: nematode whole worm


text: Max-Delbrueck-Center

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: young adult

text: glp-4(bn-2) TS

text: Caenorhabditis elegans

text: nematode whole worm

characteristic: title


characteristic: External Id

text: Hubrecht Institute

characteristic: INSDC center name

text: live

text: Generic

text: Hen1 mutant

text: Danio rerio

text: polyA tailing

characteristic: small rna library prep method

text: testis

text: TL

text: testis

characteristic: tissue

text: hen1 mutant polyA


text: Hubrecht Institute

text: live

text: Generic

text: Hen1 wildtype

text: Danio rerio

text: polyA tailing

text: testis

text: TL

characteristic: strain

text: testis

text: wildtype polyA


text: Hubrecht Institute

characteristic: INSDC first public

text: live

text: Generic

text: Hen1 mutant

text: Danio rerio

text: adapter ligation

text: testis

text: TL

text: testis

text: hen1 mutant ligation


text: Hubrecht Institute

characteristic: INSDC last update

text: live

text: Generic

text: Hen1 wildtype

text: Danio rerio

text: adapter ligation

text: testis

text: TL

text: testis

text: wildtype ligation


text: Human Genetics, Tel Aviv University

characteristic: INSDC secondary accession

text: live

text: Generic

text: BJ fibroblast cells

characteristic: cell type

text: proliferative

characteristic: growth stage

text: Homo sapiens

text: polyA RNA

characteristic: rna subtype

text: BJ fibroblast cells

text: BJ proliferative (reads len 35)


text: Human Genetics, Tel Aviv University

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: BJ fibroblast cells

text: confluent

text: Homo sapiens

text: polyA RNA

text: BJ fibroblast cells

text: BJ confluent (reads len 35)


text: Human Genetics, Tel Aviv University

text: live

text: Generic

text: BJ fibroblast cells

text: RAS-transformed

text: Homo sapiens

characteristic: organism

text: polyA RNA

text: BJ fibroblast cells

text: BJ RAS-transformed (reads len 35)


text: Human Genetics, Tel Aviv University

text: live

text: Generic

characteristic: NCBI submission model

text: BJ fibroblast cells

text: proliferative

text: Homo sapiens

text: polyA RNA

text: BJ fibroblast cells

text: BJ proliferative (reads len 100)


text: Human Genetics, Tel Aviv University

text: live

text: Generic

characteristic: NCBI submission package

text: BJ fibroblast cells

text: confluent

text: Homo sapiens

text: polyA RNA

text: BJ fibroblast cells

text: BJ confluent (reads len 100)


text: Human Genetics, Tel Aviv University

text: live

text: Generic

text: MCF10A breast epithelial cells

text: proliferative

text: Homo sapiens

text: polyA RNA

text: MCF10A breast epithelial cells

text: MCF10A proliferative

characteristic: title


characteristic: External Id

text: Human Genetics, Tel Aviv University

text: live

text: Generic

text: MCF10A breast epithelial cells

text: serum-starved

text: Homo sapiens

text: polyA RNA

text: MCF10A breast epithelial cells

text: MCF10A serum-starved


text: Human Genetics, Tel Aviv University

characteristic: INSDC center name

text: live

text: Generic

text: MCF10A breast epithelial cells

text: RAS-transformed

text: Homo sapiens

text: polyA RNA

text: MCF10A breast epithelial cells

text: MCF10A RAS-transormed (0)


text: Human Genetics, Tel Aviv University

text: live

text: Generic

text: MCF10A breast epithelial cells

text: RAS-transformed

text: Homo sapiens

text: polyA RNA

text: MCF10A breast epithelial cells

characteristic: time

text: MCF10A RAS-transormed (2d)


text: Human Genetics, Tel Aviv University

text: live

text: Generic

text: MCF10A breast epithelial cells

text: RAS-transformed

text: Homo sapiens

text: polyA RNA

text: MCF10A breast epithelial cells

text: MCF10A RAS-transormed (8d)


text: Lieb, Biology, University of North Carolina at Chapel Hill

text: live

text: Generic

text: Caenorhabditis elegans

text: whole body

characteristic: stage


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Vibrio cholerae HC-69A1

characteristic: strain

text: Vibrio cholerae HC-69A1