text: Northwest A&F University

text: live

text: Generic

text: Xinong Saanen dairy goat

characteristic: breed

text: 75 days after lambing

characteristic: developmental stage

text: Capra hircus

text: mammary gland tissues

text: dry period

characteristic: state

text: mammary gland

characteristic: tissue

text: Dry period


status: PUBLIC

characteristic: External Id

text: Northwest A&F University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Xinong Saanen dairy goat

tag: attribute

text: 320 days after lambing

text: Capra hircus

characteristic: organism

text: mammary gland tissues

text: peak lactation

text: mammary gland

text: Peak lactation

characteristic: title


DrSgMedPer

text: National Institute of Allergy and Infectious Diseases

text: live

text: Generic

text: Desmodus rotundus

text: Desmodus rotundus principal salivary gland medial lobe, periphery


ChIP-exo Histones

text: Pennsylvania State University

text: live

text: Generic

text: Saccharomyces cerevisiae S288C

text: ChIP-exo Histones


text: CIML

text: live

text: Generic

text: purified memory TCRP1A eTC-STAT5CA

characteristic: cell type

characteristic: chip antibody

text: R&D Systems

characteristic: chip antibody manufacturer

text: memory CD8+ T cells

text: Mus musculus

text: purified memory TCRP1A eTC-STAT5CA

characteristic: strain

text: Blood

text: Stat5a ChIP-Seq


text: CIML

text: live

text: Generic

text: purified memory TCRP1A eTC-STAT5CA

text: memory CD8+ T cells

characteristic: developmental stage

text: Mus musculus

text: purified memory TCRP1A eTC-STAT5CA

text: Blood

text: Input ChIP-Seq


characteristic: DNA source

text: NCBI

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Human 1000 genomes individual HG04301

characteristic: description

text: Homo sapiens

text: GBR

characteristic: population

text: singleton

text: LCL

characteristic: sample source

text: female

characteristic: sex

text: Human 1000 genomes individual HG04301

text: unrel

characteristic: type


characteristic: External Id

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Generic

text: Human 1000 genomes individual HG04302

text: Homo sapiens

text: GBR

text: singleton

text: LCL

text: male

text: Human 1000 genomes individual HG04302

text: unrel


text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

text: Human 1000 genomes individual HG04303

text: Homo sapiens

characteristic: organism

text: GBR

text: singleton

text: LCL

text: female

text: Human 1000 genomes individual HG04303

characteristic: title

text: unrel


characteristic: DNA source

text: NCBI

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Human 1000 genomes individual HG02524

text: Homo sapiens

text: KHV

text: father

text: blood

text: male

text: Human 1000 genomes individual HG02524

text: rel


text: NCBI

text: live

text: Generic

text: Generic

text: Human 1000 genomes individual HG02525

characteristic: description

text: Homo sapiens

text: KHV

characteristic: population

text: mother

text: blood

text: female

text: Human 1000 genomes individual HG02525

text: rel


text: ENCODE DCC

text: live

text: Generic

text: Dr. John Stamatoyannopoulos at UW

characteristic: biomaterial provider

characteristic: cell

text: Th2 cells in vivo isolation, donor is Caucasian, male 33 year old, primary pheresis of single normal subject

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Stamatoyannopoulous - University of Washington

characteristic: lab description

characteristic: labexpid

text: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. John Stamatoyannopoulos at UW

text: Th2 cells in vivo isolation, donor is Asian, female 26 year old, primary pheresis of single normal subject

text: normal

text: mesoderm

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Dr. John Stamatoyannopoulos at UW

characteristic: biomaterial provider

characteristic: cell

text: T regulatory cells in vivo isolation, donor is Caucasian, male 28 year old, primary pheresis of single normal subject

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Lonza

text: PrEC

text: prostate epithelial cell line

text: normal

text: epithelial

text: human

text: U

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: lab description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: PrEC

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. John Stamatoyannopoulos at UW

characteristic: biomaterial provider

characteristic: cell

text: T regulatory cells in vivo isolation

characteristic: cell description

text: normal donor is Causasian, female 35 year old, primary pheresis of single normal subject

characteristic: cell karyotype

text: mesoderm

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

characteristic: organism

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Lonza

text: HMVEC-dAd

text: adult dermal microvascular endothelial cells.

text: normal

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Homo sapiens

text: HMVEC-dAd


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center

text: HS5 Human Marrow Stromal Cells are fibroblastoid cells immortalized with HPV16 E6/E7 genes as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005, insert DNA is LXSN-16 E6E7 packaged in PA31.

text: normal

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: lab description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

characteristic: biomaterial provider

characteristic: cell

text: These cells are primary fibroblastoid cells obtained from human bone marrow of normal donors as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005.

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Dr. John Stamatoyannopoulos at UW

text: Th1 cells in vivo isolation

text: normal donor is Asian, female 26 year old, primary pheresis of single normal subject

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ScienCell

text: HBVP

text: brain vascular pericytes

text: normal

text: mesoderm

text: human

text: U

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: lab description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: HBVP

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: malignant pluripotent embryonal carcinoma (NTera-2), The NTERA-2 cl.D1 cell line is a pluripotent human testicular embryonal carcinoma cell line derived by cloning the NTERA-2 cell line. - ATCC. (PMID: 6694356)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: inner cell mass

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

characteristic: organism

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Dr. John Stamatoyannopoulos at UW

text: Th1 cells in vivo isolation, donor is Caucasian, male 33 year old, primary pheresis of single normal subject

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: WiCell Research Institute

text: undifferentiated embryonic stem cells

text: inner cell mass

text: human

text: U

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: lab description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: treatment

text: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 5 days, lineage: mesoderm

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Lonza

characteristic: biomaterial provider

characteristic: cell

text: bronchial epithelial cells with retinoic acid

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: WiCell Research Institute

text: undifferentiated embryonic stem cells

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Homo sapiens

text: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 14 days, cell sorting and specific growth factors were used, lineage: mesoderm


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Dr. John Stamatoyannopoulos at UW

characteristic: biomaterial provider

text: primary Th1 T cells

text: mesoderm

text: human

text: U

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: lab description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: ATCC

characteristic: cell

text: epithelial cell line derived from a mammary ductal carcinoma.

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

characteristic: organism

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Lonza

text: HPAEC

text: pulmonary artery endothelial cells.

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Stamatoyannopoulous - University of Washington

text: Homo sapiens

text: HPAEC


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ATCC

characteristic: biomaterial provider

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

text: ectoderm

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: lab description

characteristic: labexpid

text: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: UW_DnaseSeq_MCF-7_Estradiol_ctrl_0hrRep1

characteristic: treatment

text: No hormone control, zero timepoint, used to distinguish untreated sample in series (Stam)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rajinder Kaul, UW

characteristic: cell

text: B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

characteristic: organism

characteristic: title

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Rajinder Kaul, UW

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

text: normal

text: mesoderm

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: B cell

characteristic: cell type

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

characteristic: donor id

text: UW

characteristic: lab

characteristic: lab description

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: UW_DnaseSeq_MCF-7_Estradiol_ctrl_0hrRep2

characteristic: treatment

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ScienCell

characteristic: biomaterial provider

text: HBVSMC

text: brain vascular smooth muscle cells.

text: normal

text: mesoderm

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

text: Homo sapiens

characteristic: organism

text: HBVSMC

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. Heimfeld Lab at FHCRC

characteristic: cell

text: hematopoietic progenitor cells- mobilized, from donor RO01679.

characteristic: cell description

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: lab

characteristic: lab description

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Dr. Woodring Wright

text: skeletal myoblasts derived from satellite cells from the pectoralis major muscle of a 41 year old caucasian heart transplant donor, immortalized with lox-hygro-hTERT (LH), and Cdk4-neo (CN), Zhu et al. (2007) in Aging Cell, vol. 6, pp 515-523, newly promoted to tier 2: not in 2011 analysis.

text: mesoderm

characteristic: cell lineage

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: treatment

text: Myocytes differentiated from myoblasts for 4 days. See specific cell protocol for treatment details. (Stam)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: ATCC

characteristic: biomaterial provider

text: malignant glioblastoma, glioma, lack DNA-dependent protein kinase activity, deficient in repair of DNA double strand breaks, the cells are negative for glial fibrillary acidic protein (GFAP), tumor specimen taken from a 33 year old

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: WiCell Research Institute

text: in vitro differentiated cells

characteristic: biomaterial type

characteristic: cell

text: undifferentiated embryonic stem cells

characteristic: cell description

text: inner cell mass

characteristic: cell lineage

text: human

text: U

text: cardiac mesoderm

characteristic: cell type

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: donor id

text: UW

characteristic: lab

characteristic: lab description

text: Homo sapiens

text: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 2 days, lineage: mesoderm


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM04504

characteristic: biomaterial provider

text: adult twin pair fibroblasts, monozygotic twin of GM04503, 13% of the cells examined show random chromosome loss

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Coriell

characteristic: cell

characteristic: cell description

text: normal

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

characteristic: organism

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM04503

characteristic: biomaterial provider

text: adult twin pair fibroblasts, monozygotic twin of GM04504

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: lab

characteristic: lab description

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: WiCell Research Institute

text: in vitro differentiated cells

characteristic: biomaterial type

text: undifferentiated embryonic stem cells

text: inner cell mass

characteristic: cell lineage

text: human

text: U

text: cardiac mesoderm

characteristic: cell type

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

characteristic: donor id

text: UW

text: Stamatoyannopoulous - University of Washington

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: treatment

text: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 9 days, lineage: mesoderm

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: Human Skin Malignant Melanoma Cells, This is a hyperdiploid human cell line with the modal chromosome number of 49, occurring in 24% of cells. Polyploid cells occurred at 22%, which is high.

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Coriell

text: normal

text: human

text: F

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

characteristic: cell

text: bronchial epithelial cells with retinoic acid

text: normal

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Dr. John Stamatoyannopoulos at UW

text: CD4+ naive sorted cells, donor is Causasian, female 35 year old, primary pheresis of single normal subject

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

characteristic: organism

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: ATCC

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

text: ectoderm

text: human

text: F

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: UW_DnaseSeq_MCF-7_Estradiol_100nM_1hrRep2

characteristic: treatment

text: 1 h with 100 nM Estradiol, hormone treatment (Stam)


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

text: UW_DnaseSeq_MCF-7_Estradiol_100nM_1hrRep1

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center

text: HS27a Human Marrow Stromal Cells are fibroblastoid cells immortalized with HPV16 E6/E7 genes as described in Roecklein and Torok-Storb, 1995 Blood 85:997-1005, insert DNA is LXSN-16 E6E7 packaged in PA31.

text: normal

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Homo sapiens

characteristic: organism

characteristic: title

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Dr. Woodring Wright

text: skeletal myoblasts derived from satellite cells from the pectoralis major muscle of a 41 year old caucasian heart transplant donor, immortalized with lox-hygro-hTERT (LH), and Cdk4-neo (CN), Zhu et al. (2007) in Aging Cell, vol. 6, pp 515-523, newly promoted to tier 2: not in 2011 analysis.

text: mesoderm

characteristic: cell lineage

text: human

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: lab description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

text: HSMMtube

characteristic: cell

text: skeletal muscle myotubes differentiated from the HSMM cell line

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

characteristic: cell organism

text: U

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

text: Homo sapiens

text: HSMMtube

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: Dr. John Stamatoyannopoulos at UW

text: CD4+ naive sorted cells, donor is Caucasian, male 26 year old, primary pheresis of single normal subject

text: normal

text: mesoderm

text: human

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Homo sapiens

characteristic: organism

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. John Stamatoyannopoulos at UW

text: T helper cells expressing IL-17, primary pheresis of single normal subject

text: normal

text: mesoderm

characteristic: cell lineage

text: human

text: B

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: lab description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: S. Heimfeld Laboratory, FHCRC

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

characteristic: cell

text: Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

characteristic: cell organism

text: F

text: CD14-positive monocyte

characteristic: cell type

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: donor id

text: UW

text: Stamatoyannopoulous - University of Washington

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. John Stamatoyannopoulos at UW

text: primary Th2 T cells

text: mesoderm

characteristic: cell lineage

text: human

text: U

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: malignant glioblastoma, glioma, lack DNA-dependent protein kinase activity, deficient in repair of DNA double strand breaks, the cells are negative for glial fibrillary acidic protein (GFAP), tumor specimen taken from a 33 year old

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

characteristic: cell organism

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: malignant pluripotent embryonal carcinoma (NTera-2), The NTERA-2 cl.D1 cell line is a pluripotent human testicular embryonal carcinoma cell line derived by cloning the NTERA-2 cell line. - ATCC. (PMID: 6694356)

text: cancer

text: inner cell mass

characteristic: cell lineage

text: human

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW

text: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

characteristic: line

text: Homo sapiens

characteristic: treatment description


text: Washington University, Genome Sequencing Center

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

characteristic: biosamplemodel

text: Astyanax mexicanus

characteristic: organism

characteristic: sample id

characteristic: sample name

text: genomic dna

characteristic: sample type

text: Sample from Astyanax mexicanus

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

text: Astyanax mexicanus

text: CF

text: genomic dna

text: Sample from Astyanax mexicanus


text: Broad Institute

text: live

text: Generic

text: Generic

text: human gut metagenome

text: Generic sample from unclassified Bacteria (miscellaneous)


text: Broad Institute

text: live

text: Generic

text: Generic

text: female

characteristic: host sex

text: human gut metagenome

text: Generic sample from unclassified sequences


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: GRU

text: No

characteristic: is tumor

text: CNV Genotypes

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Case Set

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from N/A of a human male participant in the dbGaP study International Standards for Cytogenomic Arrays


characteristic: External Id

text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: DNA

text: whole blood

characteristic: body site

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

characteristic: organism

text: male

text: Case Set

text: Non-tumor DNA sample from whole blood of a human male participant in the dbGaP study International Standards for Cytogenomic Arrays

characteristic: title


text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

text: Case Set

text: Non-tumor DNA sample from a human participant in the dbGaP study International Standards for Cytogenomic Arrays


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

text: GRU

text: No

characteristic: is tumor

text: CNV Genotypes

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Non-tumor DNA sample from a human female participant in the dbGaP study International Standards for Cytogenomic Arrays


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

text: Case Set

text: International Standards for Cytogenomic Arrays

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: DNA

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Non-tumor DNA sample from N/A of a human female participant in the dbGaP study International Standards for Cytogenomic Arrays


text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: DNA

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

text: female

text: Case Set

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: whole blood

characteristic: body site

text: GRU

text: No

characteristic: is tumor

text: CNV Genotypes

text: Homo sapiens

text: male

text: Case Set


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: GRU

text: No

text: CNV Genotypes

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Case Set

characteristic: study design

characteristic: study name


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

text: male

text: Case Set

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from a human male participant in the dbGaP study International Standards for Cytogenomic Arrays


text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: whole blood

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Non-tumor DNA sample from whole blood of a human female participant in the dbGaP study International Standards for Cytogenomic Arrays


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

text: Case Set

text: Non-tumor DNA sample from N/A of a human participant in the dbGaP study International Standards for Cytogenomic Arrays

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: whole blood

characteristic: body site

text: GRU

text: Yes

characteristic: is technical control

text: No

characteristic: is tumor

text: CNV Genotypes

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Case Set


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: whole blood

text: GRU

text: Yes

text: No

text: CNV Genotypes

text: Homo sapiens

text: female

text: Case Set

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id


text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: GRU

text: Yes

text: No

text: CNV Genotypes

text: Homo sapiens

characteristic: organism

text: male

text: Case Set

characteristic: submitter handle


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: whole blood

characteristic: body site

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

text: Case Set

text: Non-tumor DNA sample from whole blood of a human participant in the dbGaP study International Standards for Cytogenomic Arrays

characteristic: title


text: IPK Gatersleben

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Morex

characteristic: cultivar

text: sub-species: vulgare

characteristic: description

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare cultivar Morex DNA library


text: Swansea University

text: live

text: Pathogen.env

text: BIGSdb

characteristic: biomaterial provider

text: Maiden Group

characteristic: collected-by

characteristic: collection date

text: United Kingdom

characteristic: geo loc name

text: environmental

characteristic: isolation source

text: Campylobacter coli BIGS0001

characteristic: strain

text: Clinical sample from Campylobacter coli BIGS0001


text: Swansea University

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: BIGSdb

text: Maiden Group

text: United Kingdom

text: Campylobacter coli BIGS0002

characteristic: organism

text: Clinical sample from Campylobacter coli BIGS0002


characteristic: External Id

text: Swansea University

text: live

text: Pathogen.env

text: BIGSdb

text: Maiden Group

text: United Kingdom

text: environmental

text: Campylobacter coli BIGS0003

text: Clinical sample from Campylobacter coli BIGS0003


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

characteristic: collected by

text: United Kingdom

text: Sus scrofa domesticus

characteristic: host

text: Gastroenteritis

characteristic: host-disease

text: pig

text: Campylobacter coli BIGS0005

text: Clinical sample from Campylobacter coli BIGS0005

characteristic: title


text: Swansea University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: Maiden Group

text: United Kingdom

text: Gallus gallus domesticus

text: Gastroenteritis

text: Chicken offal or meat

text: Campylobacter coli BIGS0006

text: Clinical sample from Campylobacter coli BIGS0006


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

text: Denmark

text: Gallus gallus domesticus

text: Gastroenteritis

text: Chicken offal or meat

text: Campylobacter coli BIGS0007

text: Clinical sample from Campylobacter coli BIGS0007


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

text: USA

text: Homo sapiens

text: Gastroenteritis

text: Human stool

text: Campylobacter coli BIGS0008

text: Clinical sample from Campylobacter coli BIGS0008


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

text: USA

text: Homo sapiens

text: Gastroenteritis

text: Human stool

text: Campylobacter coli BIGS0009

text: Clinical sample from Campylobacter coli BIGS0009


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

text: Denmark

text: Gallus gallus domesticus

text: Gastroenteritis

text: Chicken offal or meat

text: Campylobacter coli BIGS0010

text: Clinical sample from Campylobacter coli BIGS0010


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

text: United Kingdom

text: Duck

text: Gastroenteritis

text: Campylobacter coli BIGS0011

text: Clinical sample from Campylobacter coli BIGS0011


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

text: United Kingdom

text: Homo sapiens

text: Gastroenteritis

text: Human stool

text: Campylobacter coli BIGS0012

text: Clinical sample from Campylobacter coli BIGS0012


text: Australian Centre for Ecogenomics

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: An EBPR reactor was seeded from Thornside Wastewater treatment plant (-27.485973, 153.190699). Phage were separated out from the microbial biomass by centrifuging 200 mL of mixed liquor at 4000 rpm for 5 min. Supernatant was passed through a 0.22 *m filter to remove any remaining microbial biomass. Phage were then precipitated using Ferric chloride. Briefly, Ferric chloride was added to a final concentration of 20*g/mL and the resulting mixture was adjusted to pH 5.5. The mixture was shaken for 2 - 3 min and left overnight at 4*C. The next day the phage containing precipitant was filtered onto a 0.8*m nitrocellulose filter and resuspended from the filter using the ascorbate buffer described by John et al. Phage DNA was extracted by treating the solution with 1*g/mL of Proteinase K and 0.5% v/v SDS for 2 hours at 55*C. Following this, the Promega Wizard* Plus Minipreps DNA Purification System was used to purify phage DNA.

characteristic: description

text: bioreactor metagenome

text: phage metagenome of an EBPR bioreactor enriched in CAPIA


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: human gut metagenome

characteristic: sample name

text: Generic sample from unclassified Bacteria (miscellaneous)


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: female

characteristic: host sex

text: human gut metagenome

text: Generic sample from unclassified sequences


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Generic

text: male

text: human gut metagenome


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

characteristic: collaborator sample id

text: Plasmodium falciparum MLW.2745

characteristic: organism

text: Genomic DNA

characteristic: sample type

text: Other

characteristic: sex

characteristic: strain

text: Plasmodium falciparum 2745 Genomic DNA sample P.fal.MLW.2745


characteristic: External Id

text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: unclassified sequences

characteristic: title


text: Broad Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Plasmodium falciparum MLW.2788

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2788 Genomic DNA sample P.fal.MLW.2788


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Plasmodium falciparum MLW.2786

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2786 Genomic DNA sample P.fal.MLW.2786


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Plasmodium falciparum MLW.2927

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2927 Genomic DNA sample P.fal.MLW.2927


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum MLW.2928

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2928 Genomic DNA sample P.fal.MLW.2928


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum MLW.2861

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2861 Genomic DNA sample P.fal.MLW.2861


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum MLW.2929

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2929 Genomic DNA sample P.fal.MLW.2929


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum MLW.2941

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2941 Genomic DNA sample P.fal.MLW.2941


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum MLW.2955

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2955 Genomic DNA sample P.fal.MLW.2955


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum MLW.2953

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2953 Genomic DNA sample P.fal.MLW.2953


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum MLW.2965

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2965 Genomic DNA sample P.fal.MLW.2965


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum MLW.2979

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2979 Genomic DNA sample P.fal.MLW.2979


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum MLW.2998

text: Genomic DNA

text: Other

text: Plasmodium falciparum 2998 Genomic DNA sample P.fal.MLW.2998


WE

text: University of Tokyo, Graduate School of Frontier Science

text: live

text: Generic

text: C. elegans embryo

characteristic: description

text: Caenorhabditis elegans

text: C.elegans embryo


WA

text: live

characteristic: INSDC status

text: Generic

text: C.elegans adult sample

text: Caenorhabditis elegans

text: C.elegans adult


text: Shenzhen-PKU-HKUST Medical Center

text: live

text: Generic

characteristic: NCBI submission model

text: human HCC cell line (HepG2)

text: Homo sapiens

text: human HCC cell line (HepG2)


text: Shenzhen-PKU-HKUST Medical Center

text: live

text: Generic

characteristic: NCBI submission package

text: DOX-resistant counterpart of human HCC cell line (HepG2/DOX)

text: Homo sapiens


text: Broad Institute

text: live

text: Generic

text: Generic

text: human gut metagenome

characteristic: sample name

text: Generic sample from unclassified Bacteria (miscellaneous)


text: Broad Institute

text: live

text: Generic

text: Generic

text: male

characteristic: host sex

text: human gut metagenome

characteristic: organism

text: Generic sample from unclassified sequences


characteristic: GEO Accession

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: biopsy

text: source: full depth skin biopsy

text: Bos taurus

text: GSM1023355: normal bovine foot digital skin full depth biopsy 1


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: source: full depth skin biopsy

text: Bos taurus

text: GSM1023356: normal bovine foot digital skin full depth biopsy 2


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: source: full depth skin biopsy

text: Bos taurus

text: GSM1023357: normal bovine foot digital skin full depth biopsy 3


text: Gene Expression Omnibus

text: live

text: Generic

text: source: full depth skin biopsy

text: Bos taurus

text: GSM1023358: normal bovine foot digital skin full depth biopsy 4

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: source: full depth skin biopsy

text: Bos taurus

text: GSM1023359: normal bovine foot digital skin full depth biopsy 5


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

text: source: full depth skin biopsy

text: Bos taurus

text: GSM1023360: bovine digital dermatitis full depth skin biopsy 1


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: source: full depth skin biopsy

text: Bos taurus

text: GSM1023361: bovine digital dermatitis full depth skin biopsy 2


text: Gene Expression Omnibus

text: live

text: Generic

text: source: full depth skin biopsy

text: Bos taurus

text: GSM1023362: bovine digital dermatitis full depth skin biopsy 3


text: Gene Expression Omnibus

text: live

text: Generic

text: source: full depth skin biopsy

text: Bos taurus

text: GSM1023363: bovine digital dermatitis full depth skin biopsy 4


text: Gene Expression Omnibus

text: live

text: Generic

text: source: full depth skin biopsy

text: Bos taurus

text: GSM1023364: bovine digital dermatitis full depth skin biopsy 5


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

characteristic: collected by

text: United Kingdom

characteristic: geo loc name

text: Sus scrofa domesticus

characteristic: host

text: Gastroenteritis

characteristic: host-disease

text: pig

characteristic: isolation source

text: Campylobacter coli BIGS0015

characteristic: strain

text: Clinical sample from Campylobacter coli BIGS0015


text: Swansea University

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Maiden Group

text: United Kingdom

text: Duck

text: Gastroenteritis

text: Campylobacter coli BIGS0016

text: Clinical sample from Campylobacter coli BIGS0016


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

characteristic: collection date

text: United Kingdom

text: Gallus gallus domesticus

text: Gastroenteritis

text: Chicken offal or meat

text: Campylobacter coli BIGS0017

characteristic: organism

text: Clinical sample from Campylobacter coli BIGS0017


characteristic: External Id

text: Swansea University

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: Maiden Group

text: United Kingdom

text: Gallus gallus domesticus

text: Gastroenteritis

text: Chicken offal or meat

text: Campylobacter coli BIGS0018

text: Clinical sample from Campylobacter coli BIGS0018


text: Swansea University

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: Maiden Group

text: United Kingdom

text: Homo sapiens

text: Gastroenteritis

text: Human stool

text: Campylobacter coli BIGS0019

text: Clinical sample from Campylobacter coli BIGS0019

characteristic: title


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

text: United Kingdom

text: Gallus gallus domesticus

text: Gastroenteritis

text: Chicken offal or meat

text: Campylobacter coli BIGS0020

text: Clinical sample from Campylobacter coli BIGS0020


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

text: United Kingdom

text: Gallus gallus domesticus

text: Gastroenteritis

text: Chicken offal or meat

text: Campylobacter coli BIGS0021

text: Clinical sample from Campylobacter coli BIGS0021


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

text: United Kingdom

text: Duck

text: Gastroenteritis

text: Campylobacter coli BIGS0023

text: Clinical sample from Campylobacter coli BIGS0023


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

text: United Kingdom

text: Gallus gallus domesticus

text: Gastroenteritis

text: Chicken offal or meat

text: Campylobacter coli BIGS0024

text: Clinical sample from Campylobacter coli BIGS0024


text: Swansea University

text: live

text: Pathogen.cl

text: Maiden Group

text: United Kingdom

text: Homo sapiens

text: Gastroenteritis

text: Human stool

text: Campylobacter coli BIGS0025

text: Clinical sample from Campylobacter jejuni subsp. jejuni BIGS0025


text: Key Laboratory for Zoonosis Research, Ministry of Education, Institute of Zoonosis, Jilin University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: adults

characteristic: developmental stage

text: Trichinella spiralis

text: adults

text: Ad [RNA-seq]


text: live

text: Generic

text: muscle larvae

text: Trichinella spiralis

text: muscle larvae

text: ML [RNA-seq]


text: live

text: Generic

text: newborn larvae

text: Trichinella spiralis

text: newborn larvae

text: NBL [NA-seq]


R

text: University of Illinois at Urbana-Champaign

text: live

text: Generic

text: Metagenomic data of activated sludge sample from a lab-scale nitrification reactor

characteristic: description

text: Bacteria

text: Activated sludge form a lab-scale nitrification reactor

type: SRA BioSample


text: UCSF

text: live

text: Generic

text: HCMV-infected human foreskin fibroblasts

characteristic: cell type

text: cycloheximide

characteristic: drug pre-treatment

characteristic: infection duration

text: Human betaherpesvirus 5

text: Human fibroblasts infected with HCMV, cycloheximide, 5hr

text: Merlin

text: Footprints from cells infected with HCMV for 5hr, pretreated with cycloheximide


SL

characteristic: INSDC center name

text: live

text: Generic

text: Metagenomic data of activated sludge sample from a full-scale wastewater treatment plant

text: Bacteria

text: Activated sludge from a full-scale wastewater treatment plant


Weaver mite-free bee sample

text: USGS

text: live

characteristic: INSDC status

text: Generic

text: Six workers not exposed to Varroa mties from a single colony, Bee Weaver Apiaries, Navasota, Texas

text: Apis mellifera

text: Weaver apiary mite-free bee sample


text: Stanford University

text: live

text: Generic

characteristic: NCBI submission model

text: Mus musculus

text: 129S4 MOLF wildtype lung


text: Stanford University

text: live

text: Generic

characteristic: NCBI submission package

text: Mus musculus

text: 129S4 MOLF normal lung


text: Stanford University

text: live

text: Generic

text: Mus musculus

text: 129S4 MOLF normal lung 3


text: Stanford University

text: live

text: Generic

text: Mus musculus

text: 129S4 MOLF lung adenocarcinoma 1


text: Stanford University

text: live

text: Generic

text: Mus musculus

text: 129S4 MOLF F1 lung adenocarcinoma 2


text: Stanford University

text: live

text: Generic

text: Mus musculus

text: 129S4 MOLF lung adenocarcinoma 3


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: human gut metagenome

characteristic: sample name

text: Generic sample from unclassified Bacteria (miscellaneous)


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: female

characteristic: host sex

text: human gut metagenome

characteristic: organism

text: Generic sample from unclassified sequences


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: male

text: human gut metagenome

characteristic: title


text: University of Kansas Medical Center

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: squamous epithelium

text: Gastroesophageal reflux disease

characteristic: disease

text: USA: Midwest

characteristic: geo loc name

text: Homo sapiens

text: male

characteristic: sex

text: Generic sample from Homo Sapiens


text: University of Kansas Medical Center

characteristic: INSDC center name

text: live

text: Generic

text: columnar epithelium

characteristic: cell type

text: Barrett's esophagus

text: USA: Midwest

text: Homo sapiens

text: male

text: Generic sample from Homo Sapiens


N minus day 6

text: University of Padova

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: collection date

text: Italy: Padova

text: Nannochloropsis gaditana

characteristic: strain

text: Generic sample from Nannochloropsis gaditana


N plus day 6

characteristic: External Id

text: University of Padova

text: live

text: Generic

characteristic: NCBI submission package

text: Italy: Padova

text: Nannochloropsis gaditana


N minus day 3 sample a

text: University of Padova

text: live

text: Generic

text: Italy: Padova

text: Nannochloropsis gaditana

characteristic: organism


N plus day 3 sample a

text: University of Padova

characteristic: INSDC first public

text: live

text: Generic

text: Italy: Padova

text: Nannochloropsis gaditana


N minus day 3 sample b

text: University of Padova

characteristic: INSDC last update

text: live

text: Generic

text: Italy: Padova

text: Nannochloropsis gaditana


N plus day 3 sample b

text: University of Padova

text: live

text: Generic

text: Italy: Padova

text: Nannochloropsis gaditana

characteristic: title


18S rRNA

text: University of Chinese Academy of Sciences

characteristic: INSDC secondary accession

text: live

text: Generic

text: Both water and biofilm samples were taken from a local drinking water treatment process in China.

characteristic: description

text: Eukaryota

text: Eukaryotic community


text: University of Queensland

text: live

text: Generic

characteristic: SRA accession

text: Buccal swab from idiopathic pulmonary fibrosis patient 2 at time of transplant

text: human oral metagenome

text: Buccal swab from patient IPF2


text: University of Queensland

text: live

text: Generic

text: human nasopharyngeal metagenome

text: Nasopharyngeal swab from patient IPF2


text: University of Queensland

text: live

text: Generic

text: human gut metagenome

text: Rectal swab from patient IPF2


Macrotermes annandalei

text: Shanghai Institute of Plant Physiology and Ecology

text: live

text: Generic

text: Worker termites of a nest of Macrotermes annandalei (family Termitidae, subfamily Macrotermitinae) in Xishuang Banna, Yunnan Province, China were sampled, surface sterilized with 70% ethanol and eviscerated. Metagenomic DNA from microbiomes in the whole guts of termite hosts was extracted for amplyfication of the V3 regions of the 16S rRNA genes.

text: Macrotermes annandalei

text: Contributions of gut microbiota of fungus-growing termite involving cellulose hydrolysis revealed by functional metagenomic approach


text: Southern Medical University

text: live

text: Generic

text: Three five-day old adult females were fed on mice blood and collected at 1, 3, 5 days after feeding and then pooled

text: Aedes albopictus

text: Embryos were collected 0-24 hours after egg


text: Johns Hopkins University & Institute of Bioinformatics, Bangalore

text: live

text: Generic

text: Zebrafish transcriptomic profile for Liver, spleen, Testes, Eye, Muscle, Intestine-Pancreas

text: Danio rerio

text: Zebrafish trancriptome for protegenomic analysis


text: Southern Medical University

text: live

text: Generic

text: Aedes albopictus

text: blood-fed adult females


text: Southern Medical University

text: live

text: Generic

text: Aedes albopictus

text: sugar-fed


text: Southern Medical University

text: live

text: Generic

text: Aedes albopictus

text: larvae


text: Southern Medical University

text: live

text: Generic

text: Aedes albopictus

text: pupae


text: Southern Medical University

text: live

text: Generic

text: Aedes albopictus

text: adult males


text: Institute of Biochemistry, School of Life Science, Zhejiang Sci-Tech University

text: live

text: Generic

text: BmN

characteristic: cell line

text: ovarian cell

text: Bombyx mori

text: HIS monoclonal antibody [Anti-His6(2), catalog number 04905318001, lot number 70012033, Roche]

characteristic: rip antibody

text: BmN cell


text: Yijun Qi's lab, National Institute of Biological Sciences

characteristic: INSDC center name

text: live

text: Generic

characteristic: ecotype

text: wild type

characteristic: genotype

text: Arabidopsis thaliana

text: seedlings

text: 14 day old seedlings

characteristic: tissue

text: Col-0 rep1


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: wild type

text: Arabidopsis thaliana

text: seedlings

text: 14 day old seedlings

text: Col-0 rep2


characteristic: External Id

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings

text: 14 day old seedlings

text: mos2-2 rep1


text: live

text: Generic

characteristic: NCBI submission package

text: Arabidopsis thaliana

text: seedlings

text: 14 day old seedlings

text: mos2-2 rep2


text: INCPM, Weizmann Institute of Science

text: live

text: Generic

text: WT

characteristic: genotype/variation

text: Colletotrichum gloeosporioides

characteristic: organism

text: WT_In vitro liquid pH7 Mycelia

characteristic: strain background

text: mycelia


text: INCPM, Weizmann Institute of Science

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: delta-pacC

text: Colletotrichum gloeosporioides

text: ?pacC_In vitro liquid pH7 Mycelia

text: mycelia

characteristic: title


text: GU

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Suspension HeLa cells,ChIP on purified mitochondria

characteristic: description

text: Homo sapiens


beads

text: GU

characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens


text: Insect Sciences, Zhejiang University

text: live

text: Generic

text: Adults

characteristic: developmental stage

text: maintained on cotton

characteristic: growth condition

text: Bemisia tabaci

text: Middle East Asia Minor 1 species (previous known as B biotype)

characteristic: strain

text: Whole body


text: Insect Sciences, Zhejiang University

text: live

characteristic: INSDC status

text: Generic

text: Adults

text: maintained on cotton

text: Bemisia tabaci

text: Mediterranean species (previous known as Q biotype)

text: Whole body

characteristic: tissue

text: MED


characteristic: External Id

text: Insect Sciences, Zhejiang University

text: live

text: Generic

characteristic: NCBI submission model

text: Adults

text: maintained on cotton

text: Bemisia tabaci

text: Asia II 3 species (previous known as ZHJ1 biotype)

text: Whole body

text: Asia II 3


human RNAseq AD

text: human RNAseq AD

tag: Namespace:St Jude Children's Research Hosp

text: St Jude Children's Research Hospital

text: live

text: Generic

characteristic: NCBI submission package

text: In this study, 4 control and 5 AD cases from the brain bank of Emory University were selected for RNAseq.

text: Homo sapiens

text: RNAseq data sets of four control and five AD cases from Emory University


text: Washington University, Genome Sequencing Center

text: live

text: Generic

characteristic: isolate

text: Glossina palpalis gambiensis

characteristic: organism

text: female

characteristic: sex

text: Sample from Glossina palpalis gambiensis


text: Regulation of Gene Expression, Pennington Biomedical Research Center

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: diabetic

characteristic: disease state

text: closed

characteristic: neural tube

text: Mus musculus

text: E8.5 embryo, neural tube at anterior boundary of closure 1

text: FVB


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: diabetic

text: open

text: Mus musculus

text: FVB

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: normal

text: closed

text: Mus musculus

text: FVB


text: live

text: Generic

text: normal

text: open

text: Mus musculus

text: FVB

characteristic: strain


characteristic: GEO Accession

text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

text: 24 weeks

characteristic: age

text: peritoneal macrophages

characteristic: cell type

text: source: mouse peritoneal macrophages

characteristic: description

text: wild type

characteristic: genotype

text: Mus musculus

text: female

text: GSM1026888: WT macrophages (S1056 to S1075) #1


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 21 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: wild type

text: Mus musculus

characteristic: organism

text: male

text: GSM1026889: WT macrophages (S1056 to S1075) #2


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: 21 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: wild type

text: Mus musculus

text: female

characteristic: sex

text: GSM1026890: WT macrophages (S1056 to S1075) #3


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: 21 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: wild type

text: Mus musculus

text: female

text: GSM1026891: WT macrophages (S1056 to S1075) #4


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: 20 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: wild type

text: Mus musculus

text: female

text: GSM1026892: WT macrophages (S1056 to S1075) #5

characteristic: title


characteristic: GEO Accession

text: Gene Expression Omnibus

text: live

text: Generic

text: 19 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: wild type

text: Mus musculus

text: male

characteristic: strain

text: GSM1026893: WT macrophages (S1056 to S1075) #6


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

text: 17 weeks

characteristic: age

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: wild type

text: Mus musculus

text: male

text: GSM1026894: WT macrophages (S1056 to S1075) #7


text: Gene Expression Omnibus

text: live

text: Generic

text: 17 weeks

text: peritoneal macrophages

characteristic: cell type

text: source: mouse peritoneal macrophages

characteristic: description

text: wild type

text: Mus musculus

text: male

text: GSM1026895: WT macrophages (S1056 to S1075) #8


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: 17 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: wild type

characteristic: genotype

text: Mus musculus

text: female

text: GSM1026896: WT macrophages (S1056 to S1075) #9


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 17 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: wild type

text: Mus musculus

text: female

text: GSM1026897: WT macrophages (S1056 to S1075) #10


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: 21 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: SAMHD1 KO

text: Mus musculus

characteristic: organism

text: male

text: GSM1026898: KO macrophages (S1056 to S1075) #1


text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: 21 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: SAMHD1 KO

text: Mus musculus

text: male

characteristic: sex

text: GSM1026899: KO macrophages (S1056 to S1075) #2


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: 21 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: SAMHD1 KO

text: Mus musculus

text: female

text: GSM1026900: KO macrophages (S1056 to S1075) #3


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: 21 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: SAMHD1 KO

text: Mus musculus

text: female

text: GSM1026901: KO macrophages (S1056 to S1075) #4

characteristic: title


characteristic: GEO Accession

text: Gene Expression Omnibus

text: live

text: Generic

text: 21 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: SAMHD1 KO

text: Mus musculus

text: female

characteristic: strain

text: GSM1026902: KO macrophages (S1056 to S1075) #5


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

text: 20 weeks

characteristic: age

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: SAMHD1 KO

text: Mus musculus

text: male

text: GSM1026903: KO macrophages (S1056 to S1075) #6


text: Gene Expression Omnibus

text: live

text: Generic

text: 21 weeks

text: peritoneal macrophages

characteristic: cell type

text: source: mouse peritoneal macrophages

characteristic: description

text: SAMHD1 KO

text: Mus musculus

text: male

text: GSM1026904: KO macrophages (S1056 to S1075) #7


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: 19 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: SAMHD1 KO

characteristic: genotype

text: Mus musculus

text: female

text: GSM1026905: KO macrophages (S1056 to S1075) #8


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 19 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: SAMHD1 KO

text: Mus musculus

text: female

text: GSM1026906: KO macrophages (S1056 to S1075) #9


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: 17 weeks

text: peritoneal macrophages

text: source: mouse peritoneal macrophages

text: SAMHD1 KO

text: Mus musculus

characteristic: organism

text: female

text: GSM1026907: KO macrophages (S1056 to S1075) #10


text: UC Davis

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens


text: Lomonosov Moscow State University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Pinguicula vulgaris

text: Pinguicula vulgaris transcriptome, raw sequencing data


text: Genome Research Foundation

text: live

text: Generic

characteristic: SRA accession

text: a tissue sample of a intestinal type gastric cancer patient

text: Homo sapiens


text: FGCZ

characteristic: INSDC center name

text: live

text: Generic

text: Ophrys sphegodes

text: Transcriptome and proteome data reveal candidate genes for pollinator attraction in sexually deceptive orchids


text: FGCZ

text: live

text: Generic

text: Ophrys x arachnitiformis subsp. archipelagi

characteristic: title


text: FGCZ

text: live

text: Generic

text: Ophrys garganica


text: Genome Research Foundation

text: live

text: Generic

text: a blood sample of a intestinal type gastric cancer patient.

text: Homo sapiens


Xiphophorus clemenciae genomic sequence

text: Princeton University

text: live

text: Generic

text: Xiphophorus clemenciae

text: male

characteristic: sex

text: Grande

text: fin clip

characteristic: tissue-type

text: General Sample for Xiphophorus clemenciae


Xiphophorus birchmanni genome sequences

text: Princeton University

text: live

characteristic: INSDC status

text: Generic

text: Xiphophorus birchmanni

text: male

text: wild caught

characteristic: strain

text: fin clip

text: General Sample for Xiphophorus birchmanni


Xiphophorus signum RNAseq

text: Princeton University

text: live

text: Generic

text: Xiphophorus signum

text: male

text: Xiphophorus genetic stock center

text: fin clip

text: General Sample for Xiphophorus signum


Xiphophorus hellerii

text: Princeton University

text: live

text: Generic

text: Xiphophorus hellerii

text: male

text: Sarabia

text: fin

text: General Sample for Xiphophorus hellerii


Human AD RNAseq (UKY)

text: St Jude Children's Research Hospital

text: live

text: Generic

text: In this study, three control and three AD cases from the brain bank of the University of Kentucky were selected for RNAseq.

text: Homo sapiens

text: Three control and three AD cases from the University of Kentucky


text: Genome Research Foundation

text: live

text: Generic

text: a tumor tissue sample of a Korean intestinal type gastric cancer patient

text: Homo sapiens


text: Genome Research Foundation

text: live

text: Generic

text: a blood sample of an intestinal type gastric cancer Korean patient.

text: Homo sapiens


text: Seoul National University

text: live

text: Generic

text: Adult

characteristic: developmental stage

text: Wild-type

characteristic: genotype/variation

text: Caenorhabditis elegans

text: Whole organ

text: whole worm

characteristic: tissue

text: Phosphate-independent sRNAs in WT C. elegans by high-throughput sequencing


characteristic: External Id

text: Seoul National University

text: live

text: Generic

text: Adult

text: mir-249 knockout mutant

text: Caenorhabditis elegans

text: Whole organ

text: whole worm

text: Phosphate-independent sRNAs in mir-249 mutant C. elegans by high-throughput sequencing


text: Beijing Genome Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: Sample from Homo sapiens


text: INRA

text: live

text: Generic

characteristic: NCBI submission package

text: Somatic embryos of Pinus pinaster growth for 1w on maturation medium either on 4 or 9g/L gelifying agent. Tissues frozen in liquid nitrogen, grinded with mortar and pestle. Total RNA extraction, mRNA isolation and cDNA synthesis using Smart-kit. Three biological repetitions.

characteristic: description

text: Pinus pinaster

text: 1w somatic embryos Short-read paired-end


text: Agricultural Research Organisation

characteristic: INSDC first public

text: live

text: Generic

text: plants

characteristic: biome

text: Samir Droby

characteristic: collected-by

characteristic: collection date

text: Penicillim digitatum strain PDC 102 genomic DNA

text: Israel

characteristic: geo loc name

text: grapefriut

characteristic: host

text: grapefruit peel

characteristic: isolation-source

text: Penicillium digitatum PDC 102

characteristic: organism

text: PDC 102

text: DNA Sample for Penicillium digitatum


text: Columbia University

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.ba-cl

characteristic: SRA accession

text: blood

characteristic: body site

text: USA: New York, NY

characteristic: host-age

text: bacteremia

characteristic: host-disease

characteristic: investigation type

text: blood

text: 40.7142 N 74.0064 W

characteristic: lat lon

text: Bordetella holmesii 44057

characteristic: specific host

text: Bordetella holmesii 44057 clinical isolate

characteristic: title


characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Escherichia coli K-12 MG1655

characteristic: description

characteristic: sample number

text: K-12 MG1655

characteristic: strain

text: Sample from Escherichia coli str. K-12 substr. MG1655


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Lin Laboratory

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: After the donor aorta and inferior mesenteric vein (IMV) were cannulated, the aorta was flushed with 5L of 4degC cooled histidine-tryptophan-ketoglutarate solution (HTK) and the IMV was flushed with 3L of HTK which results in the perfusion of all intra-abdominal organs with preservative solution. The abdominal cavity was cooled topically with ice during perfusion. The relevant tissues were then removed and transported to a local laboratory within 1 hour. There, the tissues were minced with a blade and 1gm of tissue was placed into a cryovial with 1mL of freezing solution (freezing solution 50mL: 25mL DMEM, 10mL Normosol-R, 10mL 25% BSA, 5mL DMSO, 1 tablet protease inhibitor) for 15min on ice. The cyrovial was then placed in a 1inch-thick styrofoam container, and then placed into -80C freezer, resulting in a slow freezing to -80C over an 1hour period.

characteristic: collection method

text: Adult Heart primary tissue, year 3

text: year 3

characteristic: donor age

characteristic: donor id

text: Male

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: organism

text: Washington University, St. Louis

characteristic: tissue depot

text: Heart

characteristic: tissue type

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: University of Washington, Congenital Defects Lab. Ian Glass

text: Primary Tissue

text: fetal

text: Fetal Adrenal Gland primary tissue, day 85

text: day 85

text: Female

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Adrenal Gland

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: biomaterial provider

text: Primary Tissue

text: fetal

text: Fetal Adrenal Gland primary tissue, day 101

characteristic: description

text: day 101

text: Male

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Adrenal Gland

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: Primary Tissue

characteristic: biomaterial type

text: fetal

characteristic: collection method

text: Fetal Brain primary tissue, day 105

text: day 105

characteristic: donor age

characteristic: donor id

text: Male

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Brain

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Primary Tissue

text: fetal

text: Fetal Kidney primary tissue, day 105

text: day 105

text: Male

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: organism

text: UW

characteristic: tissue depot

text: Fetal Kidney

characteristic: tissue type

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Primary Tissue

text: fetal

text: Fetal Kidney primary tissue, day 85

text: day 85

text: Male

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Kidney

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: biomaterial provider

text: Primary Tissue

text: fetal

text: Fetal Kidney, Left primary tissue, day 98

text: day 98

text: Female

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Kidney, Left

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

text: Primary Tissue

characteristic: biomaterial type

text: fetal

characteristic: collection method

text: Fetal Kidney, Left primary tissue, day 87

characteristic: description

text: day 87

characteristic: donor age

characteristic: donor id

text: Female

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Kidney, Left

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Primary Tissue

text: fetal

text: day 87

text: Male

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: organism

text: UW

characteristic: tissue depot

text: Fetal Kidney, Left

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Primary Tissue

text: fetal

text: Fetal Kidney, Right primary tissue, day 87

text: day 87

text: Female

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Kidney, Right

characteristic: tissue type

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: biomaterial provider

text: Primary Tissue

text: fetal

text: Fetal Kidney, Right primary tissue, day 108

text: day 108

text: Male

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Kidney, Right

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: Primary Tissue

characteristic: biomaterial type

text: fetal

characteristic: collection method

characteristic: description

text: day 87

characteristic: donor age

text: Male

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Kidney, Right

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Primary Tissue

text: fetal

text: Fetal Kidney, renal, cortex primary tissue, day 96

text: day 96

characteristic: donor id

text: Female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: organism

text: UW

text: Fetal Renal Cortex

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Primary Tissue

text: fetal

text: Fetal Kidney, renal, cortex primary tissue, day 103

text: day 103

text: Female

text: genomic DNA

text: Homo sapiens

text: UW

characteristic: tissue depot

text: Fetal Renal Cortex

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Primary Tissue

text: fetal

text: Fetal Kidney, renal, pelvis primary tissue, day 96

text: day 96

text: Female

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Renal Pelvis

characteristic: tissue type

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: fetal

characteristic: collection method

text: Fetal Kidney, renal, pelvis primary tissue, day 89

characteristic: description

text: day 89

characteristic: donor age

text: Female

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Renal Pelvis

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Primary Tissue

text: fetal

text: Fetal Lung, Left primary tissue, day 87

text: day 87

characteristic: donor id

text: Male

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: UW

text: Fetal Lung, Left

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Primary Tissue

text: fetal

text: Fetal Lung, Right primary tissue, day 87

text: day 87

text: Male

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: UW

text: Fetal Lung, Right

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Primary Tissue

text: fetal

text: Fetal Muscle, Back primary tissue, day 105

text: day 105

text: Male

text: genomic DNA

text: Homo sapiens

text: UW

characteristic: tissue depot

text: Fetal Muscle, Back

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: fetal

characteristic: collection method

text: Fetal Muscle, Back primary tissue, day 108

characteristic: description

text: day 108

text: Male

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Muscle, Back

characteristic: tissue type

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Primary Tissue

text: fetal

text: Fetal Muscle, Leg primary tissue, day 85

text: day 85

characteristic: donor age

characteristic: donor id

text: Female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: UW

text: Fetal Muscle, Leg

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Primary Tissue

text: fetal

text: Fetal Muscle, Leg primary tissue, day 105

text: day 105

text: Male

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Muscle, Leg

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Primary Tissue

text: fetal

text: Fetal Ovary primary tissue, pool

text: pool

text: Female

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: UW

text: Fetal Ovary

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: fetal

characteristic: collection method

text: Fetal Placenta primary tissue, day 105

characteristic: description

text: day 105

text: Female

text: genomic DNA

text: Homo sapiens

text: UW

characteristic: tissue depot

text: Fetal Placenta

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Primary Tissue

text: fetal

text: Fetal Placenta primary tissue, day 85

text: day 85

characteristic: donor age

characteristic: donor id

text: Male

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Placenta

characteristic: tissue type

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Primary Tissue

text: fetal

text: Fetal Spinal, Cord primary tissue, day 96

text: day 96

text: Male

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: UW

text: Fetal Spinal Cord

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: University of Washington, Congenital Defects Lab. Ian Glass

text: Primary Tissue

text: fetal

text: Fetal Spinal, Cord primary tissue, day 87

text: day 87

text: Female

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Spinal Cord

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: fetal

characteristic: collection method

text: Fetal Stomach primary tissue, day 96

characteristic: description

text: day 96

text: Female

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: UW

text: Fetal Stomach

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Primary Tissue

text: fetal

text: Fetal Stomach primary tissue, day 105

text: day 105

characteristic: donor age

characteristic: donor id

text: Male

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

text: UW

characteristic: tissue depot

text: Fetal Stomach

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Primary Tissue

text: fetal

text: Fetal Testes primary tissue, pool

text: pool

text: Male

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Testes

characteristic: tissue type

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Primary Tissue

text: fetal

text: Fetal Thymus primary tissue, day 104

text: day 104

text: Male

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: UW

text: Fetal Thymus

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: fetal

characteristic: collection method

text: Fetal Thymus primary tissue, day 110

characteristic: description

text: day 110

text: Female

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Thymus

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Madras Veterinary College, TANUVAS

text: live

text: Generic

text: Chiloscyllium griseum

characteristic: organism

text: male

characteristic: sex

text: Suppressive subtractive hybridization library from peptidoglycan induced spleen of the shark species Chiloscyllium griseum

text: plasmid

text: pCR2.1 TA cloning vector

characteristic: vector


RNA-IP Lane 1

text: Lee Gil-Ya Cancer and Diabetes Institution

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: Generic sample from Homo Sapiens


RNA-IP Lane 2

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: Generic sample from Homo Sapiens


Folsomia candida

text: VU Amsterdam

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Folsomia candida

text: female

text: Berlin

characteristic: strain

text: General Sample for Folsomia candida


text: NAAS, RDA, Korea

text: live

text: Generic

characteristic: SRA accession

text: heavy metal-contaminated upland soil D1

text: soil metagenome

text: heavy metal-contaminated upland soil D1


text: NAAS, RDA, Korea

text: live

text: Generic

text: heavy metal-contaminated upland soil D3

text: soil metagenome

text: heavy metal-contaminated upland soil D3


text: NAAS, RDA, Korea

text: live

text: Generic

text: normal upland soil DD1

text: soil metagenome

text: normal upland soil DD1


text: NAAS, RDA, Korea

text: live

text: Generic

text: normal upland soil DD2

text: soil metagenome

text: normal upland soil DD2