characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NF-YB

characteristic: antibody

text: Affinity purified rabbit polyclonal raised against recombinant full length human NF-YB. Antibody Target: NF-YB

text: NF-YB is the beta subunit of the trimeric NFY transcription factor complex that binds to the ubiquitous CCAAT motif

text: Donated by Dr. R. Mantovani, Universita degli Studi di Milano, Italy

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

tag: attribute

text: Rabbit polyclonal, maps to a region between residues 350 and the C-terminus (residue 412). Antibody Target: BHLHE40

characteristic: antibody antibodydescription

text: This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differentiation.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Novus

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_GM12878_BHLHE40_(NB100-1800)_IgG-mus

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1

text: Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX

text: R&D Systems

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM12878_Mxi1_(AF4185)_IgG-mus

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal to CHD2 Synthetic peptide derived from within residues 1250 - 1350 of Human CHD2. Antibody Target: CHD2

characteristic: antibody antibodydescription

text: CHD family of proteins are characterized by presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_HeLa-S3_CHD2_(AB68301)_IgG-rab


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NF-YA

characteristic: antibody

text: Affinity purified rabbit polyclonal raised against amino acids 139-347 of recombinant human NF-YA. Antibody Target: NF-YA

text: NF-YA is the alpha subunit of the trimeric NFY transcription factor complex that binds to the ubiquitous CCAAT motif

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: std

text: Standard input signal for most experiments.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: JunD

text: rabbit polyclonal IgG. Antibody Target: JunD

characteristic: antibody antibodydescription

text: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Antibody 4295 against Brf2 was raised by immunizing rabbits with keyhole limpet hemocyanin coupled to synthetic peptides VSRSQQRGLRRVRDLC and SDSEIEQYLRTPQEVR, corresponding to human Brf2 residues 66-80 and 385-400, respectively. Antibody Target: BRF2

text: Brf2 is a component of an alternate form of the RNA Polymerase III transcription factor TFIIIB.

text: Donated by Dr. RJ White, The Beatson Institute for Cancer Research

text: ATCC

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

characteristic: lab

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal against human ZNF143 (amino acids 283-626)-6his fusion protein. Antibody Target: Znf143

characteristic: antibody antibodydescription

text: Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates to efficient U6 RNA polymerase III transcription via its interaction with CHD8

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Proteintech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_HeLa-S3_Znf143_(16618-1-AP)_IgG-rab

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1

text: Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX

text: R&D Systems

text: ATCC

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HepG2_Mxi1_(AF4185)_std

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: c-Fos

text: Rabbit polyclonal to amino acids 210-335 mapping at the C-terminus of c-Fos of human origin. Antibody Target: c-Fos

characteristic: antibody antibodydescription

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Struhl laboratory

characteristic: biomaterial provider

characteristic: cell

text: mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: input library was prepared at Harvard.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

text: Struhl - Harvard University

text: Homo sapiens

characteristic: replicate

text: Harvard_ChipSeq_MCF10A-Er-Src_EtOH_0.01pct_c-Fos_Harvard_Control

characteristic: treatment

text: 36 h with 0.01% Ethanol (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, epitope corresponding to amino acids 246-310 mapping within an internal region of CoREST of human origin recommended for detection of CoREST of mouse, rat and human origin. Antibody Target: COREST (sc30189)

text: Essential component of the BHC complex, a corepressor complex that represses transcription of neuron-specific genes in non-neuronal cells. In the BHC complex, it serves as a molecular beacon for the recruitment of molecular machinery, including MeCP2 and SUV39H1, that imposes silencing across a chromosomal interval. Plays a central role in demethylation of Lys-4 of histone H3 by promoting demethylase activity of KDM1A on core histones and nucleosomal substrates.

text: Santa Cruz Biotech

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_K562_COREST_(sc-30189)_IgG-rab

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Dec-1(S-8) is a mouse monoclonal IgG2b antibody raised against recombinant DEC1 of human origin. Recommended for detection of DEC1 of m and h origin by WB, IP and ELISA. Antibody Target: BHLHE40

characteristic: antibody antibodydescription

text: This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differe

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

text: Struhl laboratory

text: normal

text: ectoderm

text: human

text: F

text: input library was prepared at Harvard.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

characteristic: lab

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Harvard_ChipSeq_MCF10A-Er-Src_EtOH_0.01pct_c-Myc_Harvard_Control

characteristic: title

characteristic: treatment

text: 36 h with 0.01% Ethanol (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Rabbit polyclonal antibody raised against a recombinant protein encompassing the amino-terminus of the murine IKZF1 protein. Antibody Target: IKZF1

characteristic: antibody antibodydescription

text: IKAROS family zinc finger 1 (Ikaros or IKZF1) is a C2H2 zinc finger transcription factor that is associated with various chromatin-modifying complexes and is suggested to play a role in the development of lymphocytes, B- and T-cells.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: From the laboratory of Stephen Smale, UCLA

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

text: Farnham - University of Southern California

text: Homo sapiens

characteristic: replicate

text: USC_ChipSeq_GM12878_IKZF1_(IkN)_(UCLA)_std

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HepG2_insulin_Input_std

characteristic: title

text: insulin

characteristic: treatment

text: DMEM with 0.5% BSA supplemented with 100 nM insulin and 10 uM 22-hydroxycholesterol for 6 h. (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Input

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_HepG2_forskolin_Input_std

text: forskolin

text: low-glucose DMEM with 0.5% BSA supplemented with 1uM forskolin and 1mM pyruvate for 6h. (Snyder)


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse monoclonal IgG raised against human recombinant GATA-3 (amino acids 1-264). Antibody Target: GATA3

characteristic: antibody antibodydescription

text: This gene encodes a protein which belongs to the GATA family of transcription factors. The protein contains two GATA-type zinc fingers and is a n important regulator of T-cell development and plays an important role in endothelial cell biology. Defects in this gene are the cause of hypoparathyroidism with sensorineural deafness and renal dysplasia (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

text: ectoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

characteristic: lab

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: USC_ChipSeq_MCF-7_GATA3_(SC-269)_UCDavis

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Input

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

characteristic: cell

text: lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_GM18505_TNFa_Input_IgG-rab

text: TNFa

characteristic: treatment

text: human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Coriell

text: lymphoblastoid NIGMS Human Genetic Cell Repository, DNA Polymorphism Discovery Resource Collection, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: U

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM15510_TNFa_Input_IgG-rab

characteristic: title

text: TNFa


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

characteristic: cell

text: lymphoblastoid, International HapMap Project, Japanese in Tokyo, Japan, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_GM18951_TNFa_Input_IgG-rab

text: TNFa

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Coriell

text: lymphoblastoid, International HapMap Project, Han Chinese in Beijing, China, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM18526_TNFa_Input_IgG-rab

text: TNFa

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: Input

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Coriell

text: lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

characteristic: labversion

text: Homo sapiens

text: Stanford_ChipSeq_GM10847_TNFa_Input_IgG-rab

text: TNFa

characteristic: treatment


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: Input

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM12892_TNFa_Input_IgG-rab

text: TNFa

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Coriell

text: normal

text: mesoderm

text: human

text: M

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

text: Stanford_ChipSeq_GM12891_TNFa_Input_IgG-rab

characteristic: title

text: TNFa


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: Input

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

characteristic: cell

text: lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM19193_TNFa_Input_IgG-rab

text: TNFa

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Coriell

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

characteristic: labversion

text: Homo sapiens

text: Stanford_ChipSeq_GM19099_TNFa_Input_IgG-rab

text: TNFa

text: human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Struhl laboratory

characteristic: biomaterial provider

characteristic: cell

text: mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

text: Struhl - Harvard University

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Harvard_ChipSeq_MCF10A-Er-Src_4OHTAM_1uM_36hr_Pol2_std

characteristic: title

text: (To replace TAM_1uM_36hr) 36 h with 1 uM 4-hydroxytamoxifen (Myers)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal; epitope mapping at the C-terminus of Stat3 of mouse origin. Antibody Target: STAT3

characteristic: antibody antibodydescription

text: Member of STAT family. After phosphorylation in response to cytokines and growth factors (including IFNs, EGF, IL5, IL6, HGF, LIF and BMP2), forms homo- or heterodimers that translocate to nucleus and activate transcription. Activates expression of a variety of genes with roles in processes such as cell growth and apoptosis.

text: Santa Cruz Biotech

text: Struhl laboratory

text: normal

text: ectoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

characteristic: lab

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

text: Harvard_ChipSeq_MCF10A-Er-Src_4OHTAM_1uM_36hr_STAT3_std

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: SETDB1

text: SET domain, bifurcated 1, the SET domain is a highly conserved, approximately 150-amino acid motif implicated in the modulation of chromatin structure

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Proteintech Group

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: osteosarcoma from the tibia of a 15 year old, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972, (PMID: 6081590)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

text: Farnham - University of Southern California

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse polyclonal antibody raised against a partial recombinant ZNF274 (GST-fusion of a.a.420-531 of human ZNF274 protein). Works in IP, WB and ELISA. Antibody Target: ZNF274

characteristic: antibody antibodydescription

text: ZNF274 is a zinc finger protein containing five C2H2-type zinc finger domains, two Kruppel-associated box A (KRABA) domains, and a leucine-rich SCAN domain. The encoded protein has been suggested to be a transcriptional repressor. It localizes predominantly to the nucleolus.

text: ABNOVA

text: ATCC

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

characteristic: lab

characteristic: lab description

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: Raji

characteristic: cell

text: B lymphocyte, The Raji line of lymphoblast-like cells was established by R.J.V. Pulvertaft in 1963 from a Burkitt's lymphoma of the left maxilla of an 11-year-old Black male. - ATCC. (PMID: 14086209)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

text: Homo sapiens

characteristic: organism

text: Raji

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

text: Raji

text: cancer

text: mesoderm

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

text: Homo sapiens

characteristic: replicate

text: Raji


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: RNA Polymerase II

text: Covance

text: Farnham lab

characteristic: biomaterial provider

text: PBDE

characteristic: cell

text: peripheral blood-derived erythroblasts

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: PBDE

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: mouse monoclonal. Antibody Target: CtBP2

characteristic: antibody antibodydescription

text: C-terminal binding protein 2

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: BD Biosciences

characteristic: antibody vendorname

text: WiCell Research Institute

text: embryonic stem cells

text: normal

characteristic: cell karyotype

text: inner cell mass

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: KAP1

text: KRAB Associated Protein 1, helps regulate transcriptional repression

text: Abcam

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Anti-GATA-1 rabbit polyclonal antibody was generated by using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1

characteristic: antibody antibodydescription

text: GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Donated by Dr. E.H. Bresnick, UW Madison

characteristic: antibody vendorname

text: Farnham lab

text: PBDE

text: peripheral blood-derived erythroblasts

text: mesoderm

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

text: Homo sapiens

text: PBDE


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: c-Myc

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment

text: Interferon alpha treatment - 6 hours (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Jun

characteristic: antibody

text: Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun

characteristic: antibody antibodydescription

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: remapped from hg18

text: Homo sapiens

text: Interferon gamma treatment - 6 hours (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: c-Jun

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: STAT2

characteristic: antibody antibodydescription

text: peptide mapping at c-terminus of Human STAT2 p-113 (C-20) X

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: Illumina 2.0, low confidence sequences excluded

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment

text: 30 m of Interferon alpha (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal to STAT1 (alpha) p-91 (C-24). Antibody Target: STAT1

characteristic: antibody antibodydescription

text: transcription factor, activated by interferon signalling

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment

text: 30 m of Interferon alpha (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: RNA Polymerase II

text: Covance

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

characteristic: labversion

text: Homo sapiens

text: 30 m of Interferon alpha (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal IgG, epitope corresponding to a.a. 232-281 mapping at the C-terminus of E2F-6 of human origin. Antibody Target: E2F6

text: This gene encodes a member of the E2F transcription factor protein family. E2F family members play a crucial role in control of the cell cycle and of the action of tumor suppressor proteins. They are also a target of the transforming proteins of small DNA tumor viruses. Many E2F proteins contain several evolutionarily conserved domains: a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. The encoded protein of this gene is atypical because it lacks the transactivation and tumor suppressor protein association domains. It contains a modular suppression domain and is an inhibitor of E2F-dependent transcription. The protein is part of a multimeric protein complex that contains a histone methyltransferase and the transcription factors Mga and Max. Multiple transcript variants have been reported for this gene, but it has not been clearly demonstrated that they encode valid isoforms (RefSeq).

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

characteristic: lab description

text: Fragmented using Bioruptor, precipitated with StaphA

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse Monoclonal antibody HA.11 clone 16B12 was raised against the twelve amino acid peptide CYPYDVPDYASL. This second-generation HA antibody is an excellent substitute for the 12CA5 monoclonal antibody. The HA.11 antibody recognizes the influenza hemagglutinin epitope (YPYDVPDYA) which has been used extensively as a general epitope tag in expression vectors. The extreme specificity of the antibody allows unambiguous identification and quantitative analysis of the tagged protein. The HA.11 antibody recognizes HA epitopes located in the middle of protein sequences as well as at the N- or C-terminus. Antibody Target: HA-E2F1

characteristic: antibody antibodydescription

text: The HA-E2F1 protein is a derivative of E2F1, a member of the E2F family of transcription factors. The E2F family plays a crucial role in the control of cell cycle and action of tumor suppressor proteins and is also a target of the transforming proteins of small DNA tumor viruses. The E2F proteins contain several evolutionary conserved domains found in most members of the family. These domains include a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. This version of E2F1 includes an N terminal HA tag and a modified ER ligand binding domain to allow regulated translocation to the nucleus.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

text: ectoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

text: MCF-7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, precipitated with StaphA and an antibody to the HA tag,

characteristic: labversion

text: Homo sapiens

text: PeakSeq1.0 (fdr 0.001)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: NFKB

text: Rabbit polyclonal. Antibody Target: NFKB

text: Epitope mapping at the C-terminus of NF-kappa-B p65 of human origin, recommended for detection of NFkB p65 of m, r and h origin by WB, IP, IF and ELISA

text: Santa Cruz Biotech

text: Coriell

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM12878_TNFa_NFKB_IgG-rab

characteristic: title

text: TNFa

characteristic: treatment

text: human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse polyclonal antibody raised against a partial recombinant ZNF274 (GST-fusion of a.a.420-531 of human ZNF274 protein). Works in IP, WB and ELISA. Antibody Target: ZNF274

characteristic: antibody antibodydescription

text: ZNF274 is a zinc finger protein containing five C2H2-type zinc finger domains, two Kruppel-associated box A (KRABA) domains, and a leucine-rich SCAN domain. The encoded protein has been suggested to be a transcriptional repressor. It localizes predominantly to the nucleolus.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: ABNOVA

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

characteristic: labversion

text: Homo sapiens

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: TR4

text: (Also: NR2C2) Members of the nuclear hormone receptor family, such as NR2C2, act as ligand-activated transcription factors. The proteins have an N-terminal transactivation domain, a central DNA-binding domain with 2 zinc fingers, and a ligand-binding domain at the C terminus.

text: Donated by Dr. J.D.Engel, University of Michigan

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

characteristic: lab description

text: Fragmented using Bioruptor, precipitated with StaphA PeakSeq 1.0 (fdr 0.001), samples were 71% and 72% matching in the top 40% overlap analysis.

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: mouse monoclonal IgG1. Antibody Target: POL3

characteristic: antibody antibodydescription

text: RNA Polymerase III

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: YY1

text: YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins.

text: Santa Cruz Biotech

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

characteristic: lab description

text: Fragmented using Bioruptor, precipitated with Staph A,

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit Polyclonal anti-human ZZZ3, Immunogen: Synthetic peptide coupled to Ovalbumin (Name PI130, sequence CGNNNGRTTDLKQQSTRESW). Antibody Target: ZZZ3

characteristic: antibody antibodydescription

text: ZZZ3 contains one ZZ-type zinc finger domain. ZZ type finger domains are named because of their ability to bind two zinc ions. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions -they are most likely involved in ligand binding or molecular scaffolding. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Lazlo Tora, Institut de G?n?tique et de Biologie Mol?culaire et Cellulaire

characteristic: antibody vendorname

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: E2F1(KH20 and KH95) is a mouse monoclonal antibody. The epitope for KH20 has been mapped to amino acids 1-89; KH95 to amino acids 342-386. Recommended for detection of E2F1 of H and Xn origin by WB and IP. Antibody Target: E2F1

text: E2F1, the original member of the E2F family of transcription factors, was identified as a cellular protein with DNA binding activity associated with the adenovirus E2 gene promoter. E2F1 is cell cycle regulated with very low levels in early G1, then increasing levels as cells move from G1 to S, and highest levels of protein at the G1/S boundary, which is consistent with its role in S-phase entry.

text: Millipore

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

characteristic: lab description

text: HeLa cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, precipitated with StaphA and an antibody to E2F1,

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

text: ectoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

text: MCF7 cells stably expressed a tagged HA-E2F1 were fragmented using Bioruptor, crosslinks were reversed at 67*C overnight and Input was Qiagen purified,

text: Homo sapiens

text: PeakSeq1.0 (fdr 0.001)

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal - Antiserum 2663 was raised by immunizing rabbits with synthetic peptide CSDRYRIYKAQKLRE (human Bdp1 residues 139?153) coupled to KLH. Antibody Target: BDP1

characteristic: antibody antibodydescription

text: 'B double-prime 1', subunit of RNA polymerase III transcription initiation factor IIIB

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Donated by Dr. RJ White, The Beatson Institute for Cancer Research

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

characteristic: lab description

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal to STAT1 (alpha) p-91 (C-24). Antibody Target: STAT1

characteristic: antibody antibodydescription

text: transcription factor, activated by interferon signalling

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: title

characteristic: treatment

text: Interferon gamma treatment - 30 minutes (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Interferon gamma treatment - 6 hours (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal - Antiserum 1900 was raised by immunizing rabbits with synthetic peptide PKRPLTFDTNEFHIPLVT (residues 1374?1391 of the RPC155 subunit of human pol III) coupled to KLH. Antibody Target: RPC155

characteristic: antibody antibodydescription

text: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa

characteristic: antibody targetdescription

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

text: Homo sapiens

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Antibody 4295 against Brf2 was raised by immunizing rabbits with keyhole limpet hemocyanin coupled to synthetic peptides VSRSQQRGLRRVRDLC and SDSEIEQYLRTPQEVR, corresponding to human Brf2 residues 66-80 and 385-400, respectively. Antibody Target: BRF2

text: Brf2 is a component of an alternate form of the RNA Polymerase III transcription factor TFIIIB.

characteristic: antibody vendorid

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

characteristic: antibody antibodydescription

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Struhl laboratory

characteristic: biomaterial provider

text: mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER)

text: normal

text: ectoderm

text: human

text: F

text: input library was prepared at Harvard.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

text: Homo sapiens

text: Harvard_ChipSeq_MCF10A-Er-Src_4OHTAM_1uM_4hr_c-Myc_Harvard_Control

characteristic: title

characteristic: treatment

text: 4 hours with 1 uM 4-hydroxytamoxifen dissolved in ethanol (Struhl)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: WHIP

text: Rabbit polyclonal; Immunogen:Synthetic peptide: SRESYDAPPTPSGAC conjugated to KLH, corresponding to amino acids 107-120 of Human WHIP. Antibody Target: WHIP

text: Interacts with the N-terminal portion of Werner protein containing the exonuclease domain, shows homology to replication factor C family proteins, and is conserved from E. coli to human. Studies in yeast suggest that this gene may influence the aging process. Functions as a modulator for initiation or reinitiation events during DNA polymerase delta-mediated DNA synthesis. Has an intrinsic ATPase activity that functions as a sensor of DNA damage or of arrested replication forks and regulates the extent of DNA synthesis.

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CEBPB

characteristic: antibody

text: Rabbit polyclonal IgG. Antibody Target: CEBPB

characteristic: antibody antibodydescription

text: epitope mapping at the C-terminus of C/EBP-beta of rat origin

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: mouse monoclonal raised against amino acids 774-1045 of p300 of human origin. Antibody Target: P300

text: Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein.

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_K562_p300_(SC-48343)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: TBP

characteristic: antibody

text: Mouse monoclonal. Immunogen is synthetic peptide conjugated to KLH derived from within residues 1 - 100 of HumanTATA binding protein TBP. Antibody Target: TBP

characteristic: antibody antibodydescription

text: General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription.

characteristic: antibody targetdescription

text: abcam

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: IgG-mus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: goat polyclonal antibody; epitope mapping at the C-terminus of TAL1 of human origin, recommended for detection of TAL1 of mouse, rat and human origin. Antibody Target: TAL1

text: TAL1 (also designated SCL) is a serine phosphoprotein and basic helix-loop-helix transcription factor known to regulate embryonic hematopoiesis.

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_K562_TAL1_(SC-12984)_IgG-mus


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1

characteristic: antibody antibodydescription

text: Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX

characteristic: antibody targetdescription

text: R&D Systems

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

text: Stanford_ChipSeq_K562_Mxi1_(AF4185)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody vendorid

text: R&D Systems

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_HeLa-S3_Mxi1_(AF4185)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CEBPB

characteristic: antibody

text: Rabbit polyclonal IgG. Antibody Target: CEBPB

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Rabbit polyclonal IgG, epitope mapping at the N-terminus of p300 of human origin. Antibody Target: P300

text: Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_HeLa-S3_p300_(SC-584)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal to TFIIF - Recombinant full length protein - RAP 74 subunit of TF11F. Antibody Target: GTF2F1

characteristic: antibody antibodydescription

text: RNA polymerase II transcription factor TFIIF is a heterodimer with 2 subunits: one, referred to as RAP74. TFIIF appears to assist TFIIB in recruiting RNA polymerase II into a preinitiation complex. It also affects RNA transcription by suppressing transient pausing of the polymerase at locations on the DNA template.

characteristic: antibody targetdescription

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

text: Stanford_ChipSeq_K562_GTF2F1_(AB28179)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Rabbit polyclonal to CHD2 Synthetic peptide derived from within residues 1250 - 1350 of Human CHD2. Antibody Target: CHD2

text: CHD family of proteins are characterized by presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template.

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_K562_CHD2_(AB68301)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse monoclonal antibody raised against a partial recombinant ZNF274 (corresponding to amino acids 420-531 of the human ZNF274 protein). Antibody Target: ZNF274

characteristic: antibody antibodydescription

text: ZNF274 is a zinc finger protein containing five C2H2-type zinc finger domains, two Kruppel-associated box A (KRABA) domains, and a leucine-rich SCAN domain. The encoded protein has been suggested to be a transcriptional repressor and interacts with the KAP1 corepressor complex.

characteristic: antibody targetdescription

text: Abnova ZNF74

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

text: Farnham - University of Southern California

text: Homo sapiens

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: IRF-1 (C-20) is an affinity purified rabbit polyclonal antibody raised against a peptide mapping at the C-terminus of IRF-1 of human origin. Antibody Target: IRF1

text: Interferon regulatory factor 1 is a member of the interferon regulatory transcription factor (IRF) family. IRF1 serves as an activator of interferons alpha and beta transcription and also functions as a transcription activator of genes induced by interferons alpha, beta, and gamma. IRF1 has been shown to play roles in regulating apoptosis and tumor suppression.

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: treatment

text: Interferon alpha treatment - 6 hours (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: title

text: Interferon gamma treatment - 30 minutes (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: NF-YA

text: Affinity purified rabbit polyclonal raised against amino acids 139-347 of recombinant human NF-YA. Antibody Target: NF-YA

text: NF-YA is the alpha subunit of the trimeric NFY transcription factor complex that binds to the ubiquitous CCAAT motif

text: Donated by Dr. R. Mantovani, Universita degli Studi di Milano, Italy

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NF-YB

characteristic: antibody

text: Affinity purified rabbit polyclonal raised against recombinant full length human NF-YB. Antibody Target: NF-YB

characteristic: antibody antibodydescription

text: NF-YB is the beta subunit of the trimeric NFY transcription factor complex that binds to the ubiquitous CCAAT motif

characteristic: antibody targetdescription

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

text: Homo sapiens

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: NF-YA

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

characteristic: antibody antibodydescription

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Lonza

text: HUVEC

characteristic: cell

text: umbilical vein endothelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HUVEC

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description