characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Blood

text: DS-PDND

text: No

text: SNP Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: female

text: Family/Twin/Trios

text: Parkinson Disease

text: Whole Exome Sequencing in Familial Parkinson Disease

text: Yes

characteristic: title


status: PUBLIC

text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

text: DNA

tag: attribute

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: DS-PDND

text: No

characteristic: is tumor

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Family/Twin/Trios

characteristic: study design

text: Parkinson Disease

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Blood of a human male participant in the dbGaP study Whole Exome Sequencing in Familial Parkinson Disease


name: Caenorhabditis elegans N2 early embryo EE_50-120 RNA library

characteristic: External Id

text: University of Washington Genome Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Illumina sequencing of C. elegans N2 early embryo EE_50-120 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 120 minutes. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-120 Local library name: N2_EE_50-120 Quality values are ASCII encoded Phred + 33. Flowcell 62UHPAAXX was processed with GAPipeline1.8 and is 76bp. Flowcell B007UABXX was processed with GAPipeline1.7 and is 100bp.

characteristic: description

text: Caenorhabditis elegans

characteristic: organism


name: Caenorhabditis elegans N2 4 cell embryos DSN-Negative RNA library

characteristic: INSDC secondary accession

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 hand-picked 4 cell embryos DSN-Negative, total RNA. This sample is available through the modENCODE DCC (www.modencode.org) as: DSN-Negative Local library name: DSN-Negative Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

text: Caenorhabditis elegans

characteristic: title


name: Caenorhabditis elegans N2 4 cell embryos DSN-Positive RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 hand-picked 4 cell embryos DSN-Positive, total RNA. This sample is available through the modENCODE DCC (www.modencode.org) as: DSN-Positive Local library name: DSN-Positive Quality values are ASCII encoded Phred + 33. Flowcell 709C8AAXX was processed with GAPipeline1.8 and is 36bp. Flowcell 6275CAAXX was processed with GAPipeline1.8 and is 36bp.

text: Caenorhabditis elegans


characteristic: Date isolated (in YEARS-MONTHS elapsed since a chosen date, see paper)

text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: H

characteristic: patient

characteristic: strain

text: Burkholderia dolosa, clinical isolate related to AU0158, genomic data


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: L


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: A


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: M


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: B


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: E


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: G


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: K


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: J


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: I


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: C


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: blood

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: N


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: D


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: N


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: fluid, right inferior hematoma

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: N


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: pleural fluid

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: N


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: tissue, right lung

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: N


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: blood

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: J


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: blood

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: H


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: H


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: L


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: blood

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: L


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: A


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: E


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: F


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: blood

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: F


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: X


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: G


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: blood

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: G


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: K


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: blood

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: K


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: airways

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: N


text: Harvard Medical School - Roy Kishony

text: live

text: Generic

text: blood

text: Illumina sequencing 75bp single-end

text: Burkholderia dolosa AU0158

text: N


name: Caenorhabditis elegans N2 pharyngeal muscle RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 pharyngeal muscle. Pharyngeal muscle total RNA, late embryo. This sample is available through the modENCODE DCC (www.modencode.org) as: PharyngealMuscle Local library name: PharyngealMuscle Quality values are ASCII encoded Phred + 33. Flowcell 62UHPAAXX was processed with GAPipeline1.8 and is 76bp. Flowcell B007UABXX was processed with GAPipeline1.7 and is 100bp.

text: Caenorhabditis elegans


text: ENCODE DCC

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: ectoderm

characteristic: cell lineage

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

characteristic: labexpid

text: iIDR

characteristic: labversion

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 2

characteristic: replicate description

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description

characteristic: spikeinpool

text: CSHL_RnaSeq_HeLa-S3_cytosol_longNonPolyA (superseded by GSE90255)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

text: cytosol

characteristic: localization

text: The fluid between the cells outer membrane and the nucleus

characteristic: localization description

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 3

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: HUVEC

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: hepatocellular carcinoma

characteristic: cell description

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

characteristic: labexpid

text: iIDR

characteristic: labversion

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: CSHL_RnaSeq_HepG2_cytosol_longNonPolyA (superseded by GSE90256)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: WiCell Research Institute

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

text: nucleus

text: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 2

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description

characteristic: spikeinpool

text: CSHL_RnaSeq_H1-hESC_nucleus_longNonPolyA (superseded by GSE90253)


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: biorep

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

characteristic: labexpid

text: iIDR

text: cytosol

characteristic: localization

characteristic: localization description

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 2

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: CSHL_RnaSeq_H1-hESC_cytosol_longNonPolyA (superseded by GSE90252)

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Lonza

text: F

characteristic: cell sex

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

characteristic: labversion

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 3

characteristic: replicate description

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: NHEK

text: CSHL_RnaSeq_NHEK_cytosol_longNonPolyA (superseded by GSE78602)


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: iIDR

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description

characteristic: spikeinpool

text: CSHL_RnaSeq_K562_nucleus_longNonPolyA (superseded by GSE90250)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: ATCC

text: neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

characteristic: cell description

text: RnaSeq

text: Sequencing analysis of RNA expression

characteristic: labexpid

text: iIDR

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: CSHL_RnaSeq_SK-N-SH_RA_cell_longNonPolyA (superseded by GSE90251)

characteristic: title


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

text: F

characteristic: cell sex

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

characteristic: labversion

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 3

characteristic: replicate description

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: NHEK

text: CSHL_RnaSeq_NHEK_nucleus_longNonPolyA (superseded by GSE78603)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: ectoderm

characteristic: cell lineage

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: iIDR

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description

characteristic: spikeinpool

text: CSHL_RnaSeq_HeLa-S3_cell_longNonPolyA (superseded by GSE90247)


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: ectoderm

text: RnaSeq

text: Sequencing analysis of RNA expression

characteristic: labexpid

text: iIDR

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: CSHL_RnaSeq_HeLa-S3_nucleus_longNonPolyA (superseded by GSE90246)

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

characteristic: labversion

characteristic: localization description

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: CSHL_RnaSeq_K562_cytosol_longNonPolyA (superseded by GSE90249)


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ATCC

characteristic: biorep

text: hepatocellular carcinoma

characteristic: cell description

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: iIDR

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description

characteristic: spikeinpool

text: CSHL_RnaSeq_HepG2_nucleus_longNonPolyA (superseded by GSE90248)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: RnaSeq

text: Sequencing analysis of RNA expression

characteristic: labexpid

text: iIDR

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: CSHL_RnaSeq_MCF-7_cell_longNonPolyA (superseded by GSE90241)

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Coriell

characteristic: biorep

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

characteristic: labversion

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: CSHL_RnaSeq_GM12878_cytosol_longNonPolyA (superseded by GSE90244)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Coriell

characteristic: cell description

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: iIDR

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description

characteristic: spikeinpool

text: CSHL_RnaSeq_GM12878_nucleus_longNonPolyA (superseded by GSE90245)


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

text: RnaSeq

text: Sequencing analysis of RNA expression

characteristic: labexpid

text: iIDR

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: CSHL_RnaSeq_A549_cell_longNonPolyA (superseded by GSE90242)

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: ATCC

characteristic: biorep

text: skin fibroblast, The line was established from skin taken from normal foreskin. - ATCC. (PMID: 9916803)

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

characteristic: labversion

text: Homo sapiens

characteristic: readtype

text: Paired 76 nt directed reads

characteristic: readtype description

text: Paired 76 n.t. directed reads

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: BJ

text: CSHL_RnaSeq_BJ_cell_longNonPolyA (superseded by GSE90243)


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Lonza

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: iIDR

text: Whole cell

characteristic: localization description

text: Homo sapiens

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 1

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description

text: HUVEC

characteristic: spikeinpool

text: CSHL_RnaSeq_HUVEC_cell_longNonPolyA (superseded by GSE78600)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

text: RnaSeq

text: Sequencing analysis of RNA expression

characteristic: labexpid

text: iIDR

text: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA

text: Homo sapiens

characteristic: organism

text: Paired 76 nt directed reads

text: Paired 76 n.t. directed reads

text: tier 3

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: HUVEC

text: CSHL_RnaSeq_HUVEC_nucleus_longNonPolyA (superseded by GSE78601)

characteristic: title


text: University of Aveiro

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Enchytraeus albidus

text: whole body

characteristic: tissue-type

text: Enchytraeus albidus metals enriched library (SSH)


text: University of Alberta

text: live

text: Generic

text: Anas platyrhynchos

text: Lung

text: H5N2 A/mallard/BC/500/05-infected duck lung suppressive subtractive hybridization (SSH) cDNA library


text: University of Alberta

text: live

text: Generic

text: Anas platyrhynchos

text: Lung

text: H5N1 A/Vietnam/1203/04-infected duck lung suppressive subtractive hybridization (SSH) cDNA library


text: University of Alberta

text: live

text: Generic

text: Anas platyrhynchos

text: Intestine

text: H5N2 A/mallard/BC/500/05-infected duck intestine suppressive subtractive hybridization (SSH) cDNA library


text: live

text: Generic

text: Camellia sinensis

text: hermaphrodite

characteristic: sex

text: callus

text: SSH cDNA library of tea (Camellia sinensis) induced by freezing status

characteristic: vector


text: BC Cancer Agency Michael Smith Genome Sciences Centre

characteristic: INSDC secondary accession

text: live

text: Generic

text: Normal tissue - Subject N1

characteristic: description

text: Homo sapiens

text: Normal tissue - Subject N1


characteristic: External Id

text: live

text: Generic

text: Normal tissue - Subject N2

text: Homo sapiens

text: Normal tissue - Subject N2


characteristic: INSDC center name

text: live

text: Generic

text: Normal tissue - Subject N3

text: Homo sapiens

text: Normal tissue - Subject N3


text: live

text: Generic

characteristic: NCBI submission model

text: Normal tissue - Subject N4

text: Homo sapiens

text: Normal tissue - Subject N4


text: live

text: Generic

characteristic: NCBI submission package

text: Normal tissue - Subject N5

text: Homo sapiens

text: Normal tissue - Subject N5


text: live

text: Generic

characteristic: SRA accession

text: Normal tissue - Subject N6

text: Homo sapiens

text: Normal tissue - Subject N6


text: live

text: Generic

text: Normal tissue - Subject N7

text: Homo sapiens

text: Normal tissue - Subject N7


text: live

text: Generic

text: Normal tissue - Subject N8

text: Homo sapiens

text: Normal tissue - Subject N8


text: live

text: Generic

text: Normal tissue - Subject N9

text: Homo sapiens

text: Normal tissue - Subject N9


text: live

text: Generic

text: Normal tissue - Subject N10

text: Homo sapiens

text: Normal tissue - Subject N10


text: live

text: Generic

text: Normal tissue - Subject N11

text: Homo sapiens

text: Normal tissue - Subject N11


text: live

text: Generic

text: Normal tissue - Subject N12

text: Homo sapiens

text: Normal tissue - Subject N12


text: live

text: Generic

text: Large intestine

characteristic: TISSUE

text: Large intestine tumor - Subject T1

text: Colorectal carcinoma

characteristic: disease

text: Homo sapiens

text: Large intestine tumor - Subject T1


text: live

text: Generic

text: Large intestine

text: Large intestine tumor - Subject T2

text: Colorectal carcinoma

text: Homo sapiens

characteristic: organism

text: Large intestine tumor - Subject T2


text: live

text: Generic

text: Large intestine

text: Large intestine tumor - Subject T3

text: Colorectal carcinoma

text: Homo sapiens

text: Large intestine tumor - Subject T3

characteristic: title


characteristic: INSDC first public

text: live

text: Generic

text: Large intestine

text: Large intestine tumor - Subject T4

text: Colorectal carcinoma

text: Homo sapiens

text: Large intestine tumor - Subject T4


characteristic: INSDC last update

text: live

text: Generic

text: Large intestine

text: Large intestine tumor - Subject T5

text: Colorectal carcinoma

text: Homo sapiens

text: Large intestine tumor - Subject T5


text: live

characteristic: INSDC status

text: Generic

text: Large intestine

text: Large intestine tumor - Subject T6

text: Colorectal carcinoma

text: Homo sapiens

text: Large intestine tumor - Subject T6


text: live

text: Generic

text: Large intestine

text: Large intestine tumor - Subject T7

text: Colorectal carcinoma

text: Homo sapiens

text: Large intestine tumor - Subject T7


text: live

text: Generic

text: Large intestine

text: Large intestine tumor - Subject T8

text: Colorectal carcinoma

text: Homo sapiens

text: Large intestine tumor - Subject T8


text: live

text: Generic

text: Large intestine

text: Large intestine tumor - Subject T9

text: Colorectal carcinoma

text: Homo sapiens

text: Large intestine tumor - Subject T9


text: live

text: Generic

text: Large intestine

text: Large intestine tumor - Subject T10

text: Colorectal carcinoma

text: Homo sapiens

text: Large intestine tumor - Subject T10


text: live

text: Generic

text: Large intestine

text: Large intestine tumor - Subject T11

text: Colorectal carcinoma

text: Homo sapiens

text: Large intestine tumor - Subject T11


text: live

text: Generic

text: Large intestine

text: Large intestine tumor - Subject T12

text: Colorectal carcinoma

text: Homo sapiens

text: Large intestine tumor - Subject T12


text: IMBA

text: live

text: Generic

characteristic: genotype

text: Drosophila melanogaster

text: armi het

text: from 5-6 days old flies

characteristic: stage

text: ovary

characteristic: tissue

text: small RNAs (18-29nt) from heterozygotes of armi mutants


text: IMBA

characteristic: INSDC secondary accession

text: live

text: Generic

text: Drosophila melanogaster

text: armi mut

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from homozygotes of armi mutants


text: IMBA

text: live

text: Generic

text: Drosophila melanogaster

text: CG4771 het

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from heterozygotes of CG4771-delta1


text: IMBA

text: live

text: Generic

text: Drosophila melanogaster

text: CG4771 mut

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from homozygotes of CG4771-delta1


text: IMBA

text: live

text: Generic

text: fs(1)yb_72/Fm6 or fs(1)yb_4/Fm6

text: Drosophila melanogaster

text: fs(1)yb het

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from heterozygotes of fs(1)yb mutants


text: IMBA

text: live

text: Generic

text: Drosophila melanogaster

text: fs(1)yb mut

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from homozygotes of fs(1)yb mutants


text: IMBA

text: live

text: Generic

text: zuc_hm27/Cyo or zuc_cd761/Cyo

text: Drosophila melanogaster

text: zuc het

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from heterozygotes of zuc mutants


text: IMBA

text: live

text: Generic

text: Drosophila melanogaster

text: zuc mut

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from homozygotes of zuc mutants


text: Campus IFOM-IEO, European Institute of Oncology

text: live

text: Generic

text: Primary BMDM cells (7th day of differentiation)

characteristic: cell type

text: Anti- Histone H3 trimethyl Lys4 (Active Motif, Catolog # 39159)

characteristic: chip antibody

characteristic: genotype/variation

text: Mus musculus

text: mixed C57BL/6 (94%) and 129/Ola (6%)

characteristic: strain background

text: No treatment

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mus musculus

text: mixed C57BL/6 (94%) and 129/Ola (6%)

text: LPS (10 ug/ml) for 4hrs


text: Entomology, Virginia Tech

characteristic: INSDC first public

text: live

text: Generic

text: 7 days post eclosion

characteristic: developmental stage

text: Cimex lectularius

characteristic: organism

text: Insecticide susceptible

characteristic: pyrethroid-resistance status

text: Adult (male and female)

text: Harlan 1

characteristic: title


text: Entomology, Virginia Tech

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: 7 days post eclosion

text: Cimex lectularius

text: Insecticide susceptible

text: Adult (male and female)

text: Harlan 2


text: Entomology, Virginia Tech

characteristic: INSDC secondary accession

text: live

text: Generic

text: 7 days post eclosion

text: Cimex lectularius

text: Insecticide resistant

text: Adult (male only)

text: Richmond 1


text: Entomology, Virginia Tech

text: live

text: Generic

text: 7 days post eclosion

text: Cimex lectularius

text: Insecticide resistant

text: Adult (male only)

text: Richmond 2


text: Martienssen, Delbruck Bldg., Cold Spring Harbor Laboratory

text: live

text: Generic

text: Abcam ab5095

characteristic: chip antibody

text: dividing

text: h-, otr1R(SphI)::ura4, ura4-DS/E, ade6-216, his7-366, leu1-32

characteristic: genotype

text: Schizosaccharomyces pombe

text: cells

characteristic: strain


text: live

text: Generic

text: Abcam ab5131

text: dividing

text: Schizosaccharomyces pombe

text: cells


text: live

text: Generic

text: Abcam ab5095

text: dividing

text: Delta-dcr1::kanMX6, otr1R(SphI)::ura4, ura4-DS/E, ade6-210, leu1-32, his7-366

text: Schizosaccharomyces pombe

text: cells


text: live

text: Generic

text: Abcam ab5131

text: dividing

text: Schizosaccharomyces pombe

text: cells


text: live

text: Generic

text: Abcam ab5095

text: arrested

text: Schizosaccharomyces pombe

text: cells


text: live

text: Generic

text: Abcam ab5131

text: arrested

text: Schizosaccharomyces pombe

text: cells


text: live

text: Generic

text: Abcam ab5095

text: arrested

text: Schizosaccharomyces pombe

text: cells


text: live

text: Generic

text: Abcam ab5131

text: arrested

text: Schizosaccharomyces pombe

text: cells


text: Emory University

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

characteristic: cell type

text: Generated by the Corces lab. Pai et al. 2004

characteristic: chip antibody supplier

text: Drosophila melanogaster

text: Kc cells


characteristic: External Id

text: Emory University

characteristic: INSDC center name

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

text: 3 hours

characteristic: ecdysone treatment

text: Drosophila melanogaster

text: Kc cells


text: Emory University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Kc167 Drosophila Embryonic Cell line

text: 48 hours

text: Drosophila melanogaster

text: Kc cells


text: Emory University

characteristic: INSDC first public

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

text: anti-Su(Hw)

text: Generated by the Corces lab. Gerasimova et al. 1995

text: Drosophila melanogaster

characteristic: organism

text: Kc cells


text: Emory University

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

text: anti-Su(Hw)

text: 3 hours

text: Drosophila melanogaster

text: Kc cells

characteristic: title


text: Emory University

characteristic: INSDC last update

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

text: anti-Su(Hw)

text: 48 hours

text: Drosophila melanogaster

text: Kc cells


text: Emory University

text: live

characteristic: INSDC status

text: Generic

text: Kc167 Drosophila Embryonic Cell line

text: anti-dCTCF

text: Generated by the Corces lab. Gerasimova et al. 2007

text: Drosophila melanogaster

text: Kc cells


text: Emory University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

text: anti-dCTCF

text: 3 hours

text: Drosophila melanogaster

text: Kc cells


text: Emory University

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

text: anti-dCTCF

characteristic: chip antibody

text: 48 hours

text: Drosophila melanogaster

text: Kc cells


text: Emory University

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

text: Generated by the Corces lab. Bushey et al. 2009

text: Drosophila melanogaster

text: Kc cells


text: Emory University

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

text: 3 hours

text: Drosophila melanogaster

text: Kc cells


text: Emory University

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

text: 48 hours

text: Drosophila melanogaster

text: Kc cells


text: Emory University

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

text: Drosophila melanogaster

text: Kc cells


text: Walbot, Bio Sci, Stanford University

text: live

text: Generic

characteristic: cultivar

text: field-grown

characteristic: environment

text: Zea mays

text: anthers

text: 1mm anthers

characteristic: stage

text: anther

characteristic: tissue

text: Anthers at 1mm length


characteristic: External Id

text: Walbot, Bio Sci, Stanford University

text: live

text: Generic

text: field-grown

text: Zea mays

text: anthers

text: 1.5mm anthers

text: anther

text: Anthers at 1.5mm length


text: Walbot, Bio Sci, Stanford University

characteristic: INSDC center name

text: live

text: Generic

text: field-grown

text: Zea mays

text: anthers

text: 2mm anthers

text: anther

text: Anthers at 2mm length


text: Reuven Agami, Gene Regulation, The Netherlands Cancer Institute

text: live

text: Generic

text: U2OS cells

characteristic: cell line

text: osteosarcoma cell line

characteristic: cell type

text: Homo sapiens

text: U2OS cells

text: scrambled siRNA

characteristic: transfection


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: U2OS cells

text: osteosarcoma cell line

text: Homo sapiens

text: U2OS cells


characteristic: INSDC first public

text: live

text: Generic

text: U2OS cells

text: osteosarcoma cell line

text: Homo sapiens

characteristic: organism

text: U2OS cells

characteristic: title

text: PABPN1 - si#1


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: U2OS cells

text: osteosarcoma cell line

text: Homo sapiens

text: U2OS cells

text: PABPN1 - si#2


text: live

text: Generic

text: RPE-1 cells

text: hTERT-immortalized retinal pigment epithelial

text: Homo sapiens

text: RPE-1 cells

text: scrambled siRNA


text: live

text: Generic

text: RPE-1 cells

text: Homo sapiens

text: RPE-1 cells

text: PABPN1 - si#2


text: Friedrich Miescher Institute for Biomedical Research

text: live

text: Generic

text: Terminally differentiated Neurons (TN)

characteristic: chip antibody

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: Terminally differentiated neurons (TN)

characteristic: strain

text: TN_DMSO_JNK13 [ChIP-Seq]

text: DMSO (control)

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Terminally differentiated Neurons (TN)

text: wild type

text: Mus musculus

text: Terminally differentiated neurons (TN)

text: TN_JNKi_JNK1/3 [ChIP-Seq]

text: JNKi


text: ENCODE DCC

text: live

text: Generic

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: University of California, San Diego Transgenic Core and Embryonic Stem Cell

characteristic: biomaterial provider

text: mouse embryonic stem cells

characteristic: biomaterial type

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: LICR-m

characteristic: lab

text: Ren - Ludwig Institue for Cancer Research

characteristic: lab description

text: 12/23/09 SOLEXA2 Lane 4

characteristic: labversion

characteristic: line

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: C57 black 6, the most common inbred strain of laboratory mouse

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

characteristic: biomaterial provider

characteristic: cell

text: mouse embryonic stem cells

characteristic: cell description

text: mouse

text: M

text: std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 12/04/09 Lane 1

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Adult 8 weeks

text: Input

text: LICR lab

text: BoneMarrow

text: Bone Marrow

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: BoneMarrow/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 11/05/09 Lane 3

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: BoneMarrow

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: Lung

characteristic: cell

text: Lung

characteristic: cell description

text: mouse

text: M

text: std

text: Lung/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 03/20/09 Lane 7

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: Lung

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Adult 8 weeks

text: rabbit polyclonal

text: Abcam

text: LICR lab

text: Lung

text: Lung

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: Lung/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 05/27/09 Lane 4

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: Lung

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: Liver

characteristic: cell

text: Liver

characteristic: cell description

text: mouse

text: M

text: std

text: Liver/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 3/31/10 Lane 5

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: Liver

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Adult 8 weeks

text: rabbit polyclonal

text: Abcam

text: LICR lab

text: tissue

characteristic: biomaterial type

text: mouse

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

text: liver/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

characteristic: donor id

text: LICR-m

characteristic: lab

characteristic: lab description

text: 5/20/09 Lane 3

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: male

characteristic: sex

text: ELAND

characteristic: softwareversion

text: Liver

characteristic: strain description

text: liver

characteristic: tissue type


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: UW lab

characteristic: biomaterial provider

text: Kidney

characteristic: cell

text: Kidney

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: Kidney/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 04/16/09 Lane 6

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: Kidney

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Adult 8 weeks

text: rabbit polyclonal

text: Millipore

text: LICR lab

text: Heart

text: Heart

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

text: Heart/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 04/01/09 Lane 7

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: Heart

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: Cerebellum

characteristic: cell

text: Cerebellum

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: Cerebellum/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 12/09/09 Lane 1

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: Cerebellum

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Adult 8 weeks

text: Input

characteristic: antibody description

text: LICR lab

text: Cortex

text: Cortex

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

text: Cortex/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 05/26/09 Lane 5

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: Cortex

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: Input

characteristic: antibody

text: LICR lab

characteristic: biomaterial provider

text: Cerebellum

characteristic: cell

text: Cerebellum

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: Cerebellum/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 05/27/09 Lane 1

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: Cerebellum

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Adult 8 weeks

text: rabbit polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: LICR lab

text: BoneMarrow

text: Bone Marrow

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

text: BoneMarrow/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 11/19/09 Lane 3

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: BoneMarrow

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

text: Abcam

text: LICR lab

characteristic: biomaterial provider

text: Cortex

characteristic: cell

text: Cortex

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: Cortex/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 05/26/09 Lane 4

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: Cortex

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Adult 8 weeks

text: rabbit polyclonal

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: UW lab

text: Kidney

text: Kidney

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

text: Kidney/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 05/27/09 Lane 3

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: Kidney

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

text: Abcam

text: LICR lab

characteristic: biomaterial provider

text: BoneMarrow

characteristic: cell

text: Bone Marrow

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: BoneMarrow/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 12/09/09 Lane 1

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: BoneMarrow

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Adult 8 weeks

text: rabbit polyclonal

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: LICR lab

text: tissue

characteristic: biomaterial type

text: mouse

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

text: heart/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

characteristic: donor id

text: LICR-m

characteristic: lab

characteristic: lab description

text: 07/29/09 Lane 5

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: male

characteristic: sex

text: ELAND

characteristic: softwareversion

text: Heart

characteristic: strain description

text: heart

characteristic: tissue type


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: Cortex

characteristic: cell

text: Cortex

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: Cortex/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 05/26/09 Lane 1

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: Cortex

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Adult 8 weeks

text: rabbit polyclonal

text: Millipore

text: LICR lab

text: tissue

characteristic: biomaterial type

text: Cerebellum

text: Cerebellum

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

text: Cerebellum/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

characteristic: donor id

text: LICR-m

characteristic: lab

characteristic: lab description

text: 5/26/09 Lane 6

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: Cerebellum

characteristic: strain description

text: cerebellum

characteristic: tissue type


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: MEF

characteristic: cell

text: Mouse Embryonic Fibroblast

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: MEF/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 05/19/09 Lane 4

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: MEF

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Adult 8 weeks

text: rabbit polyclonal

text: Millipore

text: LICR lab

text: MEF

text: Mouse Embryonic Fibroblast

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

text: MEF/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 05/19/09 Lane 1

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: MEF

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: LICR lab

characteristic: biomaterial provider

text: MEF

characteristic: cell

text: Mouse Embryonic Fibroblast

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: MEF/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 03/09/10 Lane 4

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: MEF

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Adult 8 weeks

text: rabbit polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: LICR lab

text: tissue

characteristic: biomaterial type

text: mouse

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

text: Spleen/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

characteristic: donor id

text: LICR-m

characteristic: lab

characteristic: lab description

text: 09/19/10 Lane 8C

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: male

characteristic: sex

text: Bowtie

characteristic: softwareversion

text: Spleen

characteristic: strain description

text: Spleen

characteristic: tissue type


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: LICR lab

characteristic: biomaterial provider

text: Heart

characteristic: cell

text: Heart

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: Heart/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 05/07/09 Lane 3

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: Heart

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Adult 8 weeks

text: Input

text: UW lab

text: Kidney

text: Kidney

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

text: Kidney/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 05/07/09 Lane 7

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: Kidney

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: LICR lab

characteristic: biomaterial provider

text: Liver

characteristic: cell

text: Liver

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: Liver/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 05/7/09 Lane 4

text: Mus musculus

characteristic: organism

text: tier 1

text: ELAND

text: Liver

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Adult 8 weeks

text: Input

text: LICR lab

text: Lung

text: Lung

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

text: Lung/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 04/29/09 Lane 7

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: Lung

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: Spleen

characteristic: cell

text: Spleen

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: Spleen/Input/std

text: ChipSeq

text: ChIP-Seq

text: LICR-m

text: 09/19/10 Lane 8D

text: Mus musculus

characteristic: organism

text: tier 1

text: Bowtie

text: Spleen

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Adult 8 weeks

text: Input

characteristic: antibody description

text: LICR lab

text: Spleen

text: Spleen

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

text: Spleen/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 07/28/10 Lane 7

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: tier 1

characteristic: replicate description

text: ELAND

characteristic: softwareversion

text: Spleen

characteristic: strain description


characteristic: External Id

text: Buell Lab, Dept. of Plant Biology, Michigan State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Ginkgo biloba

characteristic: organism

text: Ginkgo biloba sterile seedling

characteristic: title


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Ginkgo biloba

text: Ginkgo biloba secondary stem


text: live

text: Generic

text: Ginkgo biloba

text: Ginkgo biloba lateral roots


text: live

text: Generic

text: Ginkgo biloba

text: Ginkgo biloba mature leaf (fully expanded)


text: USDA-ARS

text: live

text: Generic

text: bos taurus

characteristic: host species

text: bovine gut metagenome

text: the rumen microbiota of dairy cows


text: National Institute of Child Health and Human Development

text: live

text: Generic

text: Schizosaccharomyces pombe

text: Tf1 transposition


text: Broad Institute

text: live

text: Generic

text: male

characteristic: host sex

text: Normal

characteristic: isolation source

text: Homo sapiens

characteristic: sample name

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

text: male

text: Tumor

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Station Biologique de Roscoff

text: live

text: Generic

text: Crepidula fornicata

text: CREP-INOADA


text: Station Biologique de Roscoff

text: live

text: Generic

text: Crepidula fornicata

text: CREP-INOABI


text: CNRS UMR7146, University of Metz

text: live

text: Generic

text: Embryo cells

characteristic: cell type

text: SHE Cells

characteristic: cell-line

text: Differential Display experiment

characteristic: description

text: Mesocricetus auratus

text: Syrian Hamster Embryo cells library

text: pGEM-T

characteristic: vector


characteristic: External Id

text: State Key Laboratory of Marine Environmental Science, College of Oceanography and Environmental Science, Xiamen University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Pseudodiaptomus annandalei

text: mixed gender

characteristic: sex

text: whole organism

characteristic: tissue-type

text: copepod Pseudodiaptomus annandalei post-nickel exposure library


text: University of Houston, Clear Lake

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: Collected June 2009 on Hillsboro Ledge, Boca Raton, Florida, USA. Organisms stressed by the addition of LPS (Lipopolysaccharides from Pseudomonas aeruginosa serotype 10, 10ug/ml; SIGMA-Aldrich, MO, USA) for 12 hours. mRNA isolated from stressed and control organisms combined forthe creation of the library. cDNA Library created using the SMART cDNA Library Construction Kit (Clontech, CA, USA). TriplEx2 vector was transformed into pTriplEx2 vector in preparation for sequencing.

text: Eunicea fusca

characteristic: organism

text: Eunicea fusca cDNA library

text: Plasmid


text: Bose Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Bahurupi

characteristic: cultivar

text: 3 day old seedling

characteristic: organ

text: Oryza sativa

text: Oryza sativa Bahurupi 3 day old seedling library

characteristic: title


text: Bose Institute

text: live

text: Generic

text: Morian ghou

text: 3 day old seedling

text: Oryza sativa

text: Oryza sativa Morian ghou 3 day old seedling library


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: female

characteristic: host sex

text: Normal

characteristic: isolation source

text: Homo sapiens

characteristic: sample name

text: Generic sample from Homo sapiens


PRJNA67873.C6 S

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Normal

text: Homo sapiens

text: C6 S

text: Generic sample from Homo sapiens


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

characteristic: bi gssr sample id

text: broadinstitute.org:bsp.prod.sample:1U3RK

characteristic: bi gssr sample lsid

text: Genomic DNA

characteristic: bi gssr sample type

text: Candida albicans 22C

characteristic: sample id

characteristic: strain

text: Candida albicans 22C Genomic DNA sample 101341.0


text: Broad Institute

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: broadinstitute.org:bsp.prod.sample:1U3RO

text: Genomic DNA

text: Candida albicans 23G

characteristic: organism

text: Candida albicans 23G Genomic DNA sample 101345.0


Aye-Aye genome

text: Weill Cornell Medical College

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: animal id

text: Dm6451m and Dm6453f

text: nocturnal lemur

characteristic: description

text: Goblin

characteristic: name

text: Daubentonia madagascariensis

text: male

characteristic: sex

text: liver

characteristic: tissue type

text: Daubentonia madagascariensis, Aye-Aye

characteristic: title


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: female

characteristic: host sex

text: Tumor

characteristic: isolation source

text: Homo sapiens

text: KIXFRARY

characteristic: sample name

text: Generic sample from Homo sapiens


PRJNA67873.C10 S

text: Broad Institute

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Normal

text: Homo sapiens

text: C10 S

text: Generic sample from Homo sapiens


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: female

text: Tumor

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: male

text: Normal

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

text: male

text: Tumor

text: Homo sapiens

text: Generic sample from Homo sapiens


PRJNA67873.C4 S

text: Broad Institute

text: live

text: Generic

text: Normal

text: Homo sapiens

text: C4 S

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

text: male

text: Normal

text: Homo sapiens

text: QFHRSNIH

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

text: male

text: Tumor

text: Homo sapiens

text: JIDZEAPD

text: Generic sample from Homo sapiens


PRJNA67873.C10 T

text: Broad Institute

text: live

text: Generic

text: Tumor

text: Homo sapiens

text: C10 T

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

text: female

text: Tumor

text: Homo sapiens

text: OTGGZAZO

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

text: male

text: Tumor

text: Homo sapiens

text: UTWNWANU

text: Generic sample from Homo sapiens


PRJNA67873.C1 T

text: Broad Institute

text: live

text: Generic

text: Tumor

text: Homo sapiens

text: C1 T

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

text: female

text: Normal

text: Homo sapiens

text: Generic sample from Homo sapiens


PRJNA67873.C3 S

text: Broad Institute

text: live

text: Generic

text: Normal

text: Homo sapiens

text: C3 S

text: Generic sample from Homo sapiens


name: PRJNA28331.Lactobacillus curvatus F16 #9

text: Broad Institute

text: live

text: Generic

text: Latilactobacillus curvatus F16_9

text: Lactobacillus curvatus F16 #9

text: F16 #9

characteristic: strain

text: Generic sample from Lactobacillus curvatus F16_9


name: PRJNA28331.Enterococcus durans CD1 FAA 2 aer.

text: Broad Institute

text: live

text: Generic

text: Enterococcus durans CD1_FAA_2_aer.

text: Enterococcus durans CD1 FAA 2 aer.

text: CD1 FAA 2 aer.

text: Generic sample from Enterococcus durans CD1_FAA_2_aer.


PRJNA28331.Eggerthella lenta MR1 #12

text: Broad Institute

text: live

text: Generic

text: Eggerthella lenta MR1_12

text: Eggerthella lenta MR1 #12

text: MR1 #12

text: Generic sample from Eggerthella lenta MR1_12


RNA-Seq

text: BGI

text: live

text: Generic

text: Total RNA was extracted from viable lymphoblastoid cell line of an anonymous male Han Chinese using Trizol (Invitrogen), treated with RNase-free DNase I to remove residual DNA. poly(A) RNA was purified using the oligo(dT) beads. Upon chemical fragmentation, double-stranded cDNA was synthesized from these RNA samples using random hexamer-primer and reverse transcriptase (Invitrogen), and further size-selected on agarose gels.

characteristic: description

text: Homo sapiens

text: RNA-Seq polyA plus


text: Broad Institute

text: live

text: Generic

text: Fusobacterium nucleatum 13_3C

text: Fusobacterium nucleatum 13_3C

text: Generic sample from Fusobacterium nucleatum 13_3C


text: Broad Institute

text: live

text: Generic

text: Enterococcus sp. LANL_G1_MDA_FEC_HR4_2

text: Paracoccus sp. LANL_G1_MDA_FEC_HR4_2

text: Generic sample from Enterococcus sp. LANL_G1_MDA_FEC_HR4_2


name: PRJNA28331.Parabacteroides merdae UC1 BHI R

text: Broad Institute

text: live

text: Generic

text: Parabacteroides merdae UC1_BHI_R

text: Parabacteroides merdae UC1 BHI R

text: UC1 BHI R

text: Generic sample from Parabacteroides merdae UC1_BHI_R


text: Broad Institute

text: live

text: Generic

text: Generic sample from Flavobacteriaceae bacterium LANL_C1_MDA_FEC_HR3_1


text: Broad Institute

text: live

text: Generic

text: human gut metagenome

text: Generic sample from unclassified Bacteria (miscellaneous)


text: Broad Institute

text: live

text: Generic

text: Generic sample from Methylobacterium sp. LANL_B2_MDA_FEC_HR3_2


text: Broad Institute

text: live

text: Generic

text: human gut metagenome

text: Generic sample from unclassified sequences


text: Broad Institute

text: live

text: Generic

text: Chryseobacterium sp. LANL_D10_MDA_BHI_HR4_1

text: Generic sample from Planobacterium sp. LANL_D10_MDA_BHI_HR4_1


name: PRJNA28331.Helicobacter macacae MIT 99-5501

text: Broad Institute

text: live

text: Generic

text: Helicobacter macacae MIT 99-5501

text: Helicobacter macacae MIT 99-5501

text: MIT 99-5501

text: Generic sample from Helicobacter macacae MIT 99-5501

text: type strain of Helicobacter macacae

characteristic: type material


name: PRJNA28331.Adlercreutzia equolifaciens UC1 BHI P

text: Broad Institute

text: live

text: Generic

text: Adlercreutzia equolifaciens UC1_BHI_P

text: Adlercreutzia equolifaciens UC1 BHI P

text: UC1 BHI P

text: Generic sample from Adlercreutzia equolifaciens UC1_BHI_P

characteristic: title


name: PRJNA28331.Kocuria sp. LANL_A2_MDA_BH_ HR4_1

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Kocuria sp. LANL_A2_MDA_BH_HR4_1

text: Kocuria sp. LANL_A2_MDA_BH_ HR4_1

text: LANL_A2_MDA_BH_ HR4_1

text: Generic sample from Kocuria sp. LANL_A2_MDA_BH_HR4_1


name: PRJNA28331.Streptococcus mitis oral taxon 071. ATCC15914

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: oral taxon 071. ATCC15914

text: Generic sample from Streptococcus sp. oral taxon 71 str. ATCC 15914


name: PRJNA28331.Helicobacter canis NCTC 12740

text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Helicobacter canis NCTC 12740

text: Helicobacter canis NCTC 12740

text: NCTC 12740

text: Generic sample from Helicobacter canis NCTC 12740


text: Broad Institute

text: live

text: Generic

text: female

characteristic: host sex

text: Normal

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

text: male

text: Normal

characteristic: isolation source

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

text: male

text: Normal

text: Homo sapiens

text: BFJMKNMP

characteristic: sample name

text: Generic sample from Homo sapiens


text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: male

text: Tumor

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: female

text: Tumor

text: Homo sapiens

text: Generic sample from Homo sapiens


PRJNA67873.C1 S

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Normal

text: Homo sapiens

text: C1 S

text: Generic sample from Homo sapiens


small RNA-Seq

text: BGI

characteristic: INSDC secondary accession

text: live

text: Generic

text: small RNA

text: Homo sapiens

text: small RNA-Seq


Matapan metagenome samples

text: C.N.R. - Institute for Coastal Marine Environment (IAMC)

text: live

text: Generic

characteristic: NCBI submission package

text: Matapan-Vavylov Deep seawater collected at 4908m, Eastern Mediterranean Sea 36* 34.00' N, 21* 07.44' E.

text: marine metagenome

text: Metagenome of hadopelagic microbial assemblages thriving at Matapan-Vavylov Deep of the Hellenic Trench, the deepest part of Mediterranean Sea.


RNA-Seq (strand-specific)

text: BGI

text: live

text: Generic

text: Strand specific RNA-Seq.

text: Homo sapiens

characteristic: organism

text: RNA-Seq (strand-specific)


text: DBI, Plant and Soil Sciences, University of Delaware

text: live

text: Generic

characteristic: SRA accession

characteristic: accession/ecotype

text: Medicago truncatula

text: Seeding

text: Seeding

characteristic: tissue

text: Medicago truncatula Seeding


text: live

text: Generic

text: Medicago truncatula

text: Root

text: Root

text: Medicago truncatula Root


text: live

text: Generic

text: Medicago truncatula

text: Flower

text: Flower

text: Medicago truncatula Flower


text: live

text: Generic

text: Medicago truncatula

text: Nodule

text: Nodule

text: Medicago truncatula Nodule


text: live

text: Generic

text: Medicago truncatula

text: Myc

text: Myc

text: Medicago truncatula Myc


text: live

text: Generic

text: Medicago truncatula

text: Leaf

text: Leaf

text: Medicago truncatula Leaf


text: live

text: Generic

text: Medicago truncatula

text: Root Knot

text: Root Knot

text: Medicago truncatula Root Knot


text: live

text: Generic

text: Arachis hypogaea

text: Nodule

text: Nodule

text: Arachis hypogaea Nodule


text: live

text: Generic

text: Arachis hypogaea

text: Flower

text: Flower

text: Arachis hypogaea Flower


text: live

text: Generic

text: Williams 82

text: Glycine max

text: Dev.Seed

text: Dev.Seed

text: Glycine max Dev.Seed


text: live

text: Generic

text: Williams 82

text: Glycine max

text: uninoculated Root Hair

text: uninoculated Root Hair

text: Glycine max Williams 82 uninoculated Root Hair


text: live

text: Generic

text: Williams 82

text: Glycine max

text: Root Hair

text: Root Hair

text: Glycine max inoculated Root Hair


text: live

text: Generic

text: Williams 82

text: Glycine max

text: inoculated Stripped Root

text: inoculated Stripped Root

text: Glycine max Williams 82 inoculated Stripped Root


text: live

text: Generic

text: Phaseolus vulgaris

text: Nodule

text: Nodule

text: Phaseolus vulgaris Nodule


text: live

text: Generic

text: Phaseolus vulgaris

text: Dev.Seed

text: Dev.Seed

text: Phaseolus vulgaris Dev.Seed


text: live

text: Generic

text: Medicago truncatula

text: Flower

text: Flower

text: Medicago truncatula Flower_PARE


text: Reproductive Biology, Biology, Shantou University

text: live

text: Generic

characteristic: menstral cycle day

text: Macaca mulatta

text: endometrium


embryos

text: Texas A&M University

text: live

text: Generic

text: Lucilia sericata

text: embryos

characteristic: title


feeding third instars

characteristic: External Id

text: Texas A&M University

text: live

text: Generic

text: Lucilia sericata

text: feeding third instars


postfeeding third instars

text: Texas A&M University

characteristic: INSDC center name

text: live

text: Generic

text: Lucilia sericata

text: postfeeding third instars


0-1 day puparia

text: Texas A&M University

characteristic: INSDC first public

text: live

text: Generic

text: Lucilia sericata

text: 0-1 day puparia


3-4 day puparia

text: Texas A&M University

text: live

text: Generic

text: Lucilia sericata

text: 3-4 day puparia


adult females

text: Texas A&M University

text: live

text: Generic

text: Lucilia sericata

text: adult females


adult males

text: Texas A&M University

text: live

text: Generic

text: Lucilia sericata

text: adult males


subtractive hybridization

text: Texas A&M University

text: live

text: Generic

text: Lucilia sericata

text: subtractive hybridization


salivary glands

text: Texas A&M University

text: live

text: Generic

text: Lucilia sericata

text: salivary glands


Drosophila melanogaster embryos

text: Texas A&M University

text: live

text: Generic

text: Drosophila melanogaster

text: Drosophila melanogaster embryos


text: IGBMC

text: live

text: Generic

text: F9 embryonal carcinoma cells

characteristic: cell line

text: polyclonal anti-RXRa

characteristic: chip antibody

text: in-house antibody [generated by immunization of rabbits with the peptide mRXRa: PB105 (MDTKHFLPLDFSTQVNSSSLNSPTGRGC)]

characteristic: chip antibody supplier

text: Mus musculus

text: embryonal carcinoma cells


text: IGBMC

characteristic: INSDC last update

text: live

text: Generic

text: F9 embryonal carcinoma cells

text: polyclonal anti-RARg

text: in-house antibody [generated by immunization of rabbits with the peptide mRARg: PB288 (CSKPGPHPKASSEDEAPGGQGKRGQSPQPD)]

text: Mus musculus

text: embryonal carcinoma cells


text: IGBMC

text: live

characteristic: INSDC status

text: Generic

text: F9 embryonal carcinoma cells

text: polyclonal anti-RNA-PolII (H-224)

text: Santa Cruz Biotechnology

text: Mus musculus

text: embryonal carcinoma cells


text: IGBMC

text: live

text: Generic

characteristic: NCBI submission model

text: F9 embryonal carcinoma cells

text: Mus musculus

text: embryonal carcinoma cells

text: mouse_F9_WCE (input)


text: Joan Steitz, Molecular Biophysics and Biochemistry, Yale University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Herpesvirus saimiri (strain 11)

text: Hespesvirus saimiri (strain A11) infected T cell

characteristic: sample type

text: T cells

text: HVS A11 small RNAs from marmoset T cell infected cj319_A11_WT


text: Virologia Molecular Vegetal, Virologia, Universidade Federal do Rio de Janeiro

text: live

text: Generic

characteristic: NCBI submission package

text: 50 days

characteristic: age

text: Cultivar Fibermax966

characteristic: cultivar

text: Gossypium hirsutum

characteristic: organism

text: Leaves from cotton infected plant with Cotton leafroll dwarf virus (CLRDV)

text: noninoculated systemic leaves 5 days post-infection: Virus CLRDV

text: CLRDV_Infected _plant_rep1


text: live

text: Generic

characteristic: SRA accession

text: 50 days

text: Cultivar Fibermax966

text: Gossypium hirsutum

characteristic: tissue


characteristic: External Id

text: live

text: Generic

text: 50 days

text: Cultivar Fibermax966

text: Gossypium hirsutum

text: Leaves from cotton not-infected plant

text: correspondent noinculated systemic leaves

characteristic: title


text: Prof. John Mattick, Institute for Molecular Bioscience, University of Queensland

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: 143B cells

characteristic: cell type

text: Homo sapiens

text: 143B cells

text: Mitochondria

characteristic: subcellular

text: Mitochondria PARE 5' end sequencing (rep2)


text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: male

characteristic: host sex

text: Normal

characteristic: isolation source

text: Homo sapiens

characteristic: sample name

text: Generic sample from Homo sapiens


text: Broad Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: female

text: Tumor

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: female

text: Normal

text: Homo sapiens

text: Generic sample from Homo sapiens


PRJNA67873.C4 T

text: Broad Institute

text: live

text: Generic

text: Tumor

text: Homo sapiens

characteristic: organism

text: C4 T

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: male

text: Tumor

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

text: male

text: Tumor

text: Homo sapiens

text: MQETMAZC

text: Generic sample from Homo sapiens


text: Broad Institute

text: live

text: Generic

text: human gut metagenome

text: Generic sample from unclassified Bacteria (miscellaneous)


name: PRJNA28331.Mogibacterium timidum CD1 D5 FAA 3

text: Broad Institute

text: live

text: Generic

text: Mogibacterium timidum CD1_D5_FAA_3

text: Mogibacterium timidum CD1 D5 FAA 3

text: CD1 D5 FAA 3

characteristic: strain

text: Generic sample from Mogibacterium timidum CD1_D5_FAA_3


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic sample from Lachnospiraceae bacterium ORNL_2UT_Ab5152_178


name: PRJNA28331.Clostridium cadaveris CD1 D5 FAA 12

text: Broad Institute

text: live

text: Generic

text: Clostridium cadaveris CD1_D5_FAA_12

text: Clostridium cadaveris CD1 D5 FAA 12

text: CD1 D5 FAA 12

text: Generic sample from Clostridium cadaveris CD1_D5_FAA_12

characteristic: title


name: PRJNA28331.Clostridium paraputrificum ETR2 #15

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Clostridium paraputrificum ETR2_15

text: Clostridium paraputrificum ETR2 #15

text: ETR2 #15

text: Generic sample from Clostridium paraputrificum ETR2_15


name: PRJNA28331.Bifidobacterium angulatum F16 #22

text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Bifidobacterium angulatum F16_22

text: Bifidobacterium angulatum F16 #22

text: F16 #22

text: Generic sample from Bifidobacterium angulatum F16_22


name: PRJNA28331.Bacteroides capillosus UC1 FAA NB F

text: Broad Institute

text: live

text: Generic

text: Bacteroides capillosus UC1 FAA NB F

text: UC1 FAA NB F

text: Generic sample from Pseudoflavonifractor capillosus UC1_FAA_NB_F


text: Broad Institute

text: live

text: Generic

text: Generic sample from Lachnospiraceae bacterium ORNL_2UT_Ab5152_182


name: PRJNA28331.Parvimonas micra CD1 D6 FAA 3

text: Broad Institute

text: live

text: Generic

text: Parvimonas micra CD1_D6_FAA_3

text: Parvimonas micra CD1 D6 FAA 3

text: CD1 D6 FAA 3

text: Generic sample from Parvimonas micra CD1_D6_FAA_3


text: Broad Institute

text: live

text: Generic

text: Generic sample from Lachnospiraceae bacterium ORNL_2UT_Ab5152_176


text: Tuskegee University

text: live

text: Generic

text: Soil DNA from 0-15cm of pine forest. From three pooled samples.

characteristic: description

text: Bacteria

text: Forested Sample 1


text: Tuskegee University

text: live

text: Generic

text: Soil DNA from 0-15cm. Three samples pooled.

text: Bacteria

text: Forested sample 2


text: Tuskegee University

text: live

text: Generic

text: Soil DNA from 0-15cm under pine forest. Three samples pooled.

text: Bacteria

text: Forested Sample 3


text: Tuskegee University

text: live

text: Generic

text: Soil DNA taken from 0-15cm of cultivated soil. Three soil DNA samples pooled.

text: Bacteria

text: Cultivated soil sample 1


text: Tuskegee University

text: live

text: Generic

text: Bacteria

text: Cultivated soil sample 2


text: Tuskegee University

text: live

text: Generic

text: Bacteria

text: Cultivated soil sample 3


text: Tuskegee University

text: live

text: Generic

text: Soil DNA from 0-15cm in a grazed pasture soil. Three samples were pooled to form this one.

text: Bacteria

text: Grazed pasture soil sample 1


text: Tuskegee University

text: live

text: Generic

text: Bacteria

text: Grazed pasture sample 2


text: Tuskegee University

text: live

text: Generic

text: Bacteria

text: Grazed pasture sample 3


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Ginkgo biloba

text: Ginkgo biloba immature fruit (with seed)


text: live

text: Generic

text: Ginkgo biloba

text: Ginkgo biloba ripe fruit (with seed)


text: live

text: Generic

text: Ginkgo biloba

text: Ginkgo biloba mature leaf (fully expanded)


text: live

text: Generic

text: Ginkgo biloba

text: Ginkgo biloba lateral roots


text: live

text: Generic

text: Ginkgo biloba

text: Ginkgo biloba sterile seedling


text: live

text: Generic

text: Ginkgo biloba

text: Ginkgo biloba secondary stem


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae GA06083

text: Streptococcus pneumoniae GA06083

type: AMR curated data - CABBAGE

value: rifampin

value: susceptible

value: Streptococcus pneumoniae

value: erythromycin

value: cefotaxime

value: tetracycline

value: resistant

value: vancomycin

value: trimethoprim-sulfamethoxazole

value: cefaclor

value: chloramphenicol

value: penicillin

value: intermediate

value: amoxicillin

value: clindamycin

value: ofloxacin

value: meropenem

value: quinupristin-dalfopristin


characteristic: INSDC last update

text: live

text: USA

text: Generic

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA13430

text: Streptococcus pneumoniae GA13430

value: levofloxacin

value: susceptible

value: trovafloxacin

value: rifampin

value: cefuroxime


text: live

text: USA

text: Generic

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA19101

text: Streptococcus pneumoniae GA19101

value: ciprofloxacin

value: Streptococcus pneumoniae

value: cefotaxime

value: linezolid

value: tetracycline

value: resistant

value: erythromycin

value: sparfloxacin


text: live

text: USA

text: Generic

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA02270

text: Streptococcus pneumoniae GA02270

value: vancomycin

value: penicillin

value: cefaclor

value: chloramphenicol

value: trimethoprim-sulfamethoxazole


text: National Institute of Plant Genome Research

text: live

text: Generic

characteristic: cultivar

text: cDNA library cloned into TOPO plasmid vector

text: Cicer arietinum

text: immature seed

characteristic: tissue-type

text: Cicer arietinum (chickpea) immature seed (7-10 DAF) library


text: Chang Gung University

text: live

characteristic: INSDC status

text: Generic

text: The third stage larvae were obtained from the Biomphalaria glabrata snails. Directional cDNA was synthesized by oligo d(T) primer and cloned into the EcoRI/XhoI sites of the Lambda ZAP vector by using ZAP-cDNA synthesis kit (Agilent Technologies).

text: Escherichia coli XL1-blue MRF'

characteristic: lab-host

text: Angiostrongylus cantonensis

text: EcoRI

text: XhoI

text: Taiwan

text: Angiostrongylus cantonensis third stage larvae cDNA library

text: Plasmid

text: Lambda ZAP Express

characteristic: vector


text: School of Basic Medical Science, Wuhan University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Total RNA was isolated from lung stage Schistosoma japonicum cultured with host cells and those collected from lungs of infected definitive host using Trizol reagent (Invitrogen) following the manusfacturer's protocol. The cDNA synthesis was done using the Super SMART PCR cDNA synthesis kikit (Clontech). The cDNA was then directly used for SSH library construction by using the PCR-Select Suppressive Subtraction Hybridization kit (Clontech). Enriched differentially expressed genes, was sequenced using M13F. Adaptor primer sequences were removed from sequence.

text: Schistosoma japonicum

characteristic: organism

text: Whole body

text: SSH library 1 of lung stage Schistosoma japonicum


characteristic: External Id

text: live

text: Generic

text: Total RNA was isolated from lung stage Schistosoma japonicum cultured with and without host cells using Trizol reagent (Invitrogen) following the manusfacturer's protocol. The cDNA synthesis was done using the Super SMART PCR cDNA synthesis kit (Clontech). The cDNA was then directly used for SSH library construction by using the PCR-Select Suppressive Subtraction Hybridization kit (Clontech). Enriched differentially expressed genes, was sequenced using M13F. Adaptor primer sequences were removed from sequence.

text: Schistosoma japonicum

text: Whole body

text: SSH library 2 of lung stage Schistosoma japonicum