text: live

text: Generic

characteristic: NCBI submission model

text: Prunus mume var. mume

text: Flower buds were collected at the paradormant stage in June and July.

text: paradormant flower bud

text: mume


status: PUBLIC

characteristic: External Id

text: Experimental Farm, Graduate School of Agriculture, Kyoto University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Prunus mume var. mume

characteristic: organism

text: Flower buds were collected at the endodormant stage in August and September.

tag: attribute

characteristic: sample comment

characteristic: sample name

text: endodormant flower bud (8,9)

characteristic: title

text: mume

characteristic: variety


text: live

text: Generic

text: Prunus mume var. mume

text: Leaf buds were collected at the ecodormant stage in February and March.

text: ecodormant leaf bud

text: mume


text: live

text: Generic

text: Prunus mume var. mume

text: Leaf buds were collected at the endodormant stage in November.

text: endodormant leaf bud

text: mume


text: live

text: Generic

text: Prunus mume var. mume

text: Leaf buds were collected at the paradormant stage in June.

text: paradormant leaf bud

text: mume


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

characteristic: cell line

text: Homo sapiens


text: live

text: Generic

text: Homo sapiens

text: Binding site : H3K4me3. ChIP_seq library. Human Beas2b IL-4 stimulation cell line.


text: live

text: Generic

text: Homo sapiens


text: Department of Bioscience, Faculty of Applied Bioscience, Tokyo Univetsity of Agriculture

text: live

text: Generic

text: Synechocystis sp. PCC 6803

text: Whole genome resequencing of Synechocystis sp. PCC 6803 PCC-N strain


text: live

text: Generic

text: Synechocystis sp. PCC 6803

text: Whole genome resequencing of Synechocystis sp. PCC 6803 GT-I strain


text: live

text: Generic

text: Synechocystis sp. PCC 6803

text: Whole genome resequencing of Synechocystis sp. PCC 6803 PCC-P strain


text: live

text: Generic

text: Ramos

text: Homo sapiens

text: Binding site : H3Ac ChIP_seq library. Human Ramos IL-4 stimulation cell line.


text: live

text: Generic

text: Homo sapiens

text: none provided


text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Homo sapiens

text: Whole genomic DNA from human cell line GM18940

text: Human GM18940 whole genome


text: live

text: Generic

text: X

characteristic: chromosome

text: Homo sapiens

text: Genomic DNA from exons on chromosome X of human cell line GM18940

text: Human GM18940 chrX exon


text: live

text: Generic

text: Homo sapiens

text: Genomic DNA from chromosome 21 of human cell line GM130B

text: Human GM130B chr21


text: live

text: Generic

text: Y

text: Homo sapiens

text: Genomic DNA from chromosome Y of human cell line GM130B

text: Human GM130B chrY


text: Tea Orchard Soil-H2O-Day56-1

characteristic: CGTCTC

text: Tea Orchard Soil-H2O-Day56-2

characteristic: CGTGTC

text: Tea Orchard Soil-H2O-Day56-3

characteristic: CTACAG

text: Tea Orchard Soil-Urea-Day56-1

characteristic: CTACGA

text: Tea Orchard Soil-Urea-Day56-2

characteristic: CTACGC

text: Tea Orchard Soil-Urea-Day56-3

characteristic: CTACGT

text: Forest Soil-Day0-1

characteristic: CTAGTA

text: Forest Soil-Day0-2

characteristic: CTAGTG

text: Forest Soil-Day0-3

characteristic: CTATCG

text: Forest Soil-H2O-Day56-1

characteristic: CTATGC

text: Forest Soil-H2O-Day56-2

characteristic: CTCAGA

text: Forest Soil-H2O-Day56-3

characteristic: CTCAGT

text: Forest Soil-Urea-Day56-1

characteristic: CTCTGA

text: Forest Soil-Urea-Day56-2

characteristic: CTCTGC

text: Forest Soil-Urea-Day56-3

characteristic: CTGACA

text: Tea Orchard Soil-Day0-1

characteristic: CTGACG

text: Tea Orchard Soil-Day0-2

characteristic: CTGACT

text: Tea Orchard Soil-Day0-3

characteristic: CTGAGA

text: Soil Environment and Pollution Remediation Laboratory, Institute of Soil Science, Chinese Academy of Sciences

text: live

text: Generic

text: soil metagenome

text: The high-throughput sequencing of 16S rRNA genes at the whole community level provides an almost unbiased profiling strategy for measuring characteristic changes in relative proportions of the microorganisms involved in certain functional processes, such as nitrification, in a complex system. There are 18 samples in the study.Each have three reduplicate.Two kinds of soil are involved in the study including forest soil(FS) and tea orchard soil(TS).The sample reflect the 16s rRNA gene diversity of forest soil and tea orchard soil in Zhejiang province of China.The soil samples were incubated in in soil microcosms for 8 weeks. Microcosm incubation was performed by adding 100.0 μg of urea-N g-1 d.w.s or sterilized water every week.

text: the 454 result of forest and tea orchard soil's different treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: cell line

text: Mus musculus

characteristic: organism

characteristic: sample comment

characteristic: sample name

characteristic: title


text: Laboratory of Applied Microbiology, Biological Chemistry, Faculty of Agriculture

text: live

text: Generic

text: Acetobacter tropicalis NBRC 101654

text: Draft genome assembly constracted from this sequence reads is available at GenBank accession BABS01000001-BABS01000773.

text: Acetobacter tropicalis NBRC 101654


text: Laboratory of Insect Genetics and Biosciences, Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, University of Tokyo

text: live

text: Generic

text: ovary

characteristic: cell type

text: 4 day old pupa

characteristic: dev stage

text: Bombyx mori

text: piRNA library was constructed from say 4 pupal ovary from a female that shows sex differentiation deficiency

text: female

characteristic: sex

text: Ovarian piRNAs from a female that shows W chromosome mutation linked sex differentiation deficiency (Individual No. 4-1)


characteristic: External Id

text: live

text: Generic

text: ovary

text: 4 day old pupa

text: Bombyx mori

text: female

text: Ovarian piRNAs from a female that shows W chromosome mutation linked sex differentiation deficiency (Individual No. 1-2)


characteristic: INSDC center name

text: live

text: Generic

text: ovary

text: 4 day old pupa

text: Bombyx mori

text: female

text: Ovarian piRNAs from a female that shows W chromosome mutation linked sex differentiation deficiency (Individual No. 4-2)


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens


text: Bioinformatics Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences

characteristic: INSDC last update

text: live

text: Generic

text: Sorghum bicolor

text: Sorghum bicolor L. Moench BTx623

text: Sorghum bicolor L. Moench BTx623


characteristic: INSDC secondary accession

text: live

text: Generic

text: Ramos

text: Homo sapiens

text: Binding site : H3K4me3 ChIP_seq library. Human Ramos IL-4 stimulation cell line.


text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: source: MCF7; description: chip_seq library.


text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens


text: Lab of RNA biochemistry, Department of Chemistry and Biotechnology, The Graduate School of Engineering, The University of Tokyo

text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: Total RNAs of a human adult brain (Male, Age 30) CE-

text: Human ICESeq CE-


text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: Total RNAs of a human adult brain (Male, Age 30) CE+

text: Human ICESeq CE+


text: live

text: Generic

text: Homo sapiens

text: Total RNAs of a human adult brain (Male, Age 30) CE++

text: Human ICESeq CE++


text: Genome-Transcriptome Group, Plant Global Education Project, Graduate School of Biological Science, Nara Institute of Science and Technology

text: live

text: Generic

text: Arabidopsis thaliana

text: One of the supressor for uni-1D


text: live

text: Generic

text: Arabidopsis thaliana

text: One of the reference wild type derived from Col-0

text: Col-Tasaka


text: live

text: Generic

text: Arabidopsis thaliana

text: One of the reference wild type derived from Ws

text: Ws-Tasaka


text: live

text: Generic

text: Ramos

characteristic: cell line

text: Homo sapiens

text: Binding site : H3Ac. ChIP_seq library. Human Ramos IL4 non-stimulation cell line.


text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Latimeria chalumnae

characteristic: organism

text: Genomic DNA from Comoros coelacanth Latimeria chalumnae.


text: live

text: Generic

text: Mus musculus

characteristic: sample comment


text: Laboratory of Crop Evolution, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University

text: live

text: Generic

text: Fagopyrum esculentum

text: mRNA sequence from short styles of buckwheat (Fagopyrum esculentum)

characteristic: sample name

text: mRNA from short styles


text: live

text: Generic

text: Fagopyrum esculentum

text: mRNA sequence from long styles of buckwheat (Fagopyrum esculentum)

text: mRNA from long styles2

characteristic: title


text: live

text: Generic

text: Fagopyrum esculentum

text: mRNA from long styles1


text: live

text: Generic

text: Fagopyrum esculentum

text: Contig composed from 10 BAC clones

text: genomic sequence of buckwheat around S gene


text: Institute for Advanced Biosciences, Keio University

text: live

text: Generic

text: Homo sapiens

text: Masaru Tomita (male, born December 28, 1957) is a Japanese molecular biologist and computer scientist, best known as the director of the E-Cell simulation environment software and/or the inventor of GLR parser algorithm. He is a professor of Keio University, president of the Institute for Advanced Biosciences, and the founder and board member of Human Metabolome Technologies, Inc. He is also the co-founder and on the board of directors of The Metabolomics Society.

text: Masaru Tomita


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: none provided


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

text: Rattus norvegicus

text: Total RNA extracted from the muscle of thigh (EV:0100377) of one male rat aged of 6 weeks

text: striated muscle (same batch as DRS001397)


text: live

text: Generic

text: Rattus norvegicus

text: Negative control, replicate 1.


text: live

text: Generic

text: Rattus norvegicus

text: +4 PCR cycles +4 cycles, replicate 1


text: live

text: Generic

text: Rattus norvegicus

text: -2 PCR cycles -2 cycles, replicate 2


text: live

text: Generic

text: Rattus norvegicus

text: striated muscle


text: live

text: Generic

text: Rattus norvegicus

text: Negative control, replicate 3.


text: live

text: Generic

text: Rattus norvegicus

text: -2 PCR cycles -2 cycles, replicate 1


text: live

text: Generic

text: Rattus norvegicus

text: +2 PCR cycles +2 cycles, replicate 1


text: live

text: Generic

text: Rattus norvegicus

text: Treated with T4 polynucleotide kinase and Terminator exonuclease, replicate 1.


text: live

text: Generic

text: Rattus norvegicus

text: Treated with T4 polynucleotide kinase and Terminator exonuclease, replicate 2.


text: live

text: Generic

text: Rattus norvegicus

text: Treated with Terminator exonuclease, replicate 2.


text: live

text: Generic

text: Rattus norvegicus

text: +2 PCR cycles +2 cycles, replicate 2


text: live

text: Generic

text: Rattus norvegicus

text: Treated with Terminator exonuclease, replicate 1.


text: live

text: Generic

text: Rattus norvegicus

text: Negative control, replicate 2.


text: live

text: Generic

text: Rattus norvegicus

text: Treated with T4 polynucleotide kinase and Terminator exonuclease, replicate 3.


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

text: Generic

text: Mus musculus

text: source: B22 cells were generated previously described in de la Serna et al. (2000) Mol. Cell. Biol. 20, 2839-2851

text: B22 undifferentiated cells forced expression of MyoD


text: live

text: Generic

text: Drosophila melanogaster

text: AGO2- and negative control-IP short RNA-seq in heat shock and control conditions, Negative control for IP, heat shock

text: AGO2 Negative control for IP heat shock


text: live

text: Generic

text: Drosophila melanogaster

text: AGO2- and negative control-IP short RNA-seq in heat shock and control conditions, IP, heat shock

text: AGO2 IP heat shock


text: live

text: Generic

text: Drosophila melanogaster

text: AGO2- and negative control-IP short RNA-seq in heat shock and control conditions, Negative control for IP, No heat shock

text: AGO2 Negative control for IP no heat shock


text: live

text: Generic

text: Drosophila melanogaster

text: AGO2- and negative control-IP short RNA-seq in heat shock and control conditions, IP, No heat shock

text: AGO2 IP no heat shock


text: live

text: Generic

text: Drosophila melanogaster

text: AGO2- and negative control-IP short RNA-seq in heat shock and control conditions, Ago2 IP, No heat shock

text: Ago2 IP heat shock


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

text: Drosophila melanogaster

text: AGO2- and negative control-IP short RNA-seq in heat shock and control conditions, No heat shock

text: AGO2 IP no heat shock


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens


text: Laboratory of Animal Ecology, Graduate School of Science, Kyoto University

text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3985) of a laboratory cross, labeled with GAGT RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3982) of a laboratory cross, labeled with CGTA RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3993) of a laboratory cross, labeled with TATC RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3994) of a laboratory cross, labeled with TCGA RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3981) of a laboratory cross, labeled with CCAT RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3979) of a laboratory cross, labeled with ATTT RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3988) of a laboratory cross, labeled with GTCA RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: Male parent (TT3851) of a laboratory cross, labeled with ACCC RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3978) of a laboratory cross, labeled with AGGG RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3986) of a laboratory cross, labeled with GCTG RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3983) of a laboratory cross, labeled with CTGC RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3987) of a laboratory cross, labeled with GGAC RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: F1 male (TT3980) of a laboratory cross, labeled with CACG RAD tag.

text: A cross of Cyprichromis leptosoma


text: live

text: Generic

text: Cyprichromis leptosoma

text: Female parent (TT3852) of a laboratory cross, labeled with AAAA RAD tag.

text: A cross of Cyprichromis leptosoma


text: Hasebe reprogramming evolution project, Exploratory Research for Advanced Technology, Japan Science and Technology Agency

text: live

text: Generic

text: Physcomitrium patens

text: Derivative of the single spore isolate from the labstrain chosen for the genome sequencing.

text: Gransden 2004

characteristic: strain


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: source: MCF7; description: chip_seq library.


text: live

text: Generic

text: Homo sapiens

text: source: lung epithelial cells transfected siRNA against STAT6 and stimulated with IL-4; description: Oligo capped transcriptional start site library.


text: Bioinformatics Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences

text: live

text: Generic

text: Nipponbare

characteristic: cultivar

text: Oryza sativa Japonica Group

text: Oryza sativa L. ssp. japonica cv. Nipponbare


text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Latimeria chalumnae

text: Genomic DNA from Tanzanian coelacanth Latimeria chalumnae, TCC025.


text: Genetic Strain Stock Center, Plant Genetics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Oryza sativa Japonica Group

text: Stigma RNA

text: Rice Transcriptome Multiplex-2_stigma


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Ovary RNA

text: Rice Transcriptome Multiplex-2_ovary


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Anther RNA

text: Rice Transcriptome Multiplex-2_anther


text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: Homo sapiens


text: Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University

text: live

text: Generic

text: Plasmodium cynomolgi strain B

text: DNA sample of Plasmodium cynomolgi (strain B).

text: B

text: Plasmodium cynomolgi (strain B) DNA


text: live

text: Generic

text: Latimeria chalumnae

text: Genomic DNA from Tanzanian coelacanth Latimeria chalumnae, TCC034.


text: Ecological genomics lab, Department of Forest Genetics, Forestry and Forest Products Research Institute

text: live

text: Generic

text: Calophyllum inophyllum

text: RNA was extracted from inner bark, current year twigs and terminal buds of several year old seedling of Calophyllum inophyllum, naturally grown in Bonin Island, and cDNA library construction and next generation sequencing by Roche 454 GS FLX sequencer with titanium chemistry were carried out.

text: Calophyllum inophyllum


text: Microbial and Genetic Resources Research Group, Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology

text: live

text: Generic

characteristic: environmental sample

text: 36.06 N 140.17 E

characteristic: lat lon

text: soil metagenome

text: A forest soil in the site of AIST Tsukuba, Japan (36.06N 140.17E).


characteristic: External Id

text: Hattori Laboratory, Department of Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, The University of Tokyo

characteristic: INSDC center name

text: live

text: Generic

text: Candidatus Arthromitus sp. SFB-mouse-Yit

text: Candidatus Arthromitus sp. isolated from BALB/c mouse. Segmented filamentous bacteria isolated from mouse.


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Candidatus Arthromitus sp. SFB-rat-Yit

text: Candidatus Arthromitus sp. isolated from rat. Segmented filamentous bacteria isolated from rat

text: Candidatus Arthromitus sp. SFB-rat-Yit


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Latimeria chalumnae

text: Genomic DNA from Tanzanian coelacanth Latimeria chalumnae, S2.


text: Genome Analysis Research Group, Extremophiles Research Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science and Technology

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: microbial mat metagenome

text: This is a metagenomic project to figure out the microbial community flourished along with hot water stream in the Japanese subsurface mine. As a first step of this project, we constructed a fosmid library from the DNA directly isolated from the microbial mat without cultivation. Since we could get about 3,500 fosmid clones, we determined the paired-end sequence of all fosmid clones. We selected putative archaeal genome fragments from the metagenomic library. Total of 132 fosmids were grouped into each 13 or 20 fosmid and each group was analyzed in a half plate of 454 GS20. In addition, 18 fosmids were analyzed by Sanger sequencing. A composite archaeal genome was reconstructed from 91 complete or partial fosmid sequences.

text: Composite genome of Caldiarchaeum subterraneus


text: Environmental Biotechnology, Environmental Engineering, Ewha Womans University

text: live

text: Generic

characteristic: SRA accession

text: biofilm metagenome

text: Lab-scale biocover for methane removal Ribosomal tag pyrosequencing based on DNA and RNA

text: Comparison of RNA- and DNA-Based Bacterial Communities in a Lab-Scale Methane-Degrading Biocover using Ribosomal Tag Pyrosequencing


text: Department of Bioscience, Faculty of Applied Bioscience, Tokyo Univetsity of Agriculture

text: live

text: Generic

text: Pseudomonas fluorescens Pf0-1

characteristic: organism

text: Genomic DNA from Pseudomonas fluorescens Pf0-1 derivative; with lacI, pCAR1::rfp

text: Pseudomonas fluorescens Pf0-1L(pCAR1::rfp_Pf)


text: live

text: Generic

text: Pseudomonas fluorescens Pf0-1

text: Genomic DNA from Pseudomonas fluorescens Pf0-1L(pCAR1::rfp_Pf) mutant isolated from the artificial freshwater microcosm

characteristic: sample comment

text: Pseudomonas fluorescens 5EP83


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: Binding site : H3Ac. ChIP_seq library. Human Beas2b IL-4 stimulation cell line.

characteristic: sample name


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

text: Generic

text: Mus musculus

text: source: B22 cells were generated previously described in de la Serna et al. (2000) Mol. Cell. Biol. 20, 2839-2851

text: B22_overexpression of MyoD_Differentiated_24h

characteristic: title


text: Genetic Strain Stock Center, Plant Genetics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Oryza rufipogon

text: Oryza rufipogon annual

characteristic: strain


text: live

text: Generic

text: Oryza rufipogon

text: Oryza rufipogon perennial


text: live

text: Generic

text: Nipponbare

characteristic: cultivar

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group


text: Pomology, Graduate School of Agriculture, Kyoto University

text: live

text: Generic

text: Prunus mume

text: Pollen grains were sampled from cv. Nanko planted in experimental orchard in Kyoto University, in spring of 2011.

text: Pollen from Prunus mume cv. Nanko


text: live

text: Generic

text: Prunus mume

text: Pollen grains were sampled from cv. Kairyo-Uchida-Ume planted in experimental orchard in Kyoto University, in spring of 2011.

text: Pollen from Prunus mume cv. Kairyo-Uchida-Ume


text: live

text: Generic

text: Prunus avium

text: Pollen grains were sampled from cv. Satonishiki planted in experimental orchard in Kyoto University, in spring of 2011.

text: Pollen from Prunus avium cv. Satonishiki


text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: Homo sapiens

text: source: TIG-3; description: chip_seq library.


text: live

text: Generic

text: Homo sapiens

text: non-immunoprecipitated sample. ChIP_seq library. Human Beas2b IL-4 stimulation cell line.


text: Washington University, Genome Sequencing Center

text: live

text: MIGS.ba

text: PCAP

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Anaerotruncus colihominis (GenBank Accession Number for 16S rDNA gene: AJ315980) is a member of the Firmicutes division of the domain bacteria and has been isolated from human feces. It has been found in 16S rDNA sequence-based enumerations of the colonic microbiota of adult humans (Eckburg et. al. (2005), Ley et. al. (2006)).

characteristic: description

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 3: Improved-High-Quality Draft6x;36

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

text: Homo sapiens

characteristic: host

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Anaerotruncus colihominis DSM 17241

text: Anaerotruncus colihominis DSM 17241

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS20, Sanger

characteristic: sequencing method

characteristic: sop

text: DSM 17241, CCUG 45055, CIP 107754, WAL 14565

text: DSM 17241

text: Anaerotruncus colihominis DSM 17241

text: type strain of Anaerotruncus colihominis

characteristic: type material


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler, PCAP

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: none provided

text: Level 3: Improved-High-Quality Draft8.8x;41

text: not determined

text: Homo sapiens

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Bacteroides stercoris ATCC 43183

characteristic: organism

text: Bacteroides stercoris ATCC 43183

text: Reference Genome

text: not determined

text: 454-GS20, Sanger

text: ATCC 43183, CIP 104203T, JCM 9496

text: ATCC 43183

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bacteroides stercoris ATCC 43183

characteristic: title

text: type strain of Bacteroides stercoris


Biomphalaria glabrata

text: live

text: Generic

text: none provided

characteristic: description

text: Biomphalaria glabrata

text: Generic sample from Biomphalaria glabrata


Callithrix jacchus

text: live

text: Generic

text: none provided

text: Callithrix jacchus

text: Generic sample from Callithrix jacchus


Monodelphis domestica

text: live

text: Generic

text: none provided

text: Monodelphis domestica

text: Generic sample from Monodelphis domestica


Ruminococcus sp. GM2/1

text: live

text: Generic

text: none provided

text: Ruminococcus sp. GM2/1

text: Generic sample from Ruminococcus sp. GM2/1


Roseburia faecis M72/1

text: live

text: Generic

text: Roseburia faecis M72/1 (GenBank Accession Number for 16S rDNA gene: AY305310) is a member of the division Firmicutes. In one comprehensive 16S rDNA sequence-based enumeration of the colonic microbiota of three healthy adult humans, it represents, on average, 0.355% of all 16S rDNA sequences and 0.699% of the sequences in its division (Eckburg et. al. (2005)).

text: Roseburia faecis M72/1

text: Generic sample from Roseburia faecis M72/1

text: type strain of Roseburia faecis

characteristic: type material


characteristic: External Id

text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Catenibacterium mitsuokai (GenBank Accession Number for 16S rDNA gene: AB030221) is a member of the Firmicutes division of the domain bacteria. In one comprehensive 16S rDNA sequence-based enumeration of the colonic microbiota of three healthy adult humans, it represents, on average, 0.482% of all 16S rDNA sequences and 0.095% of the sequences in its division (Eckburg et. al. (2005)).

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft46.6x;475

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

text: Homo sapiens

characteristic: host

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Catenibacterium mitsuokai DSM 15897

text: Catenibacterium mitsuokai DSM 15897

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: DSM 15897, JCM 10609

text: DSM 15897

text: Catenibacterium mitsuokai DSM 15897

text: type strain of Catenibacterium mitsuokai


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: PCAP

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Bacteroides coprocola (GenBank Accession Number for 16S rDNA gene: AB200224) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces.

characteristic: description

text: Level 3: Improved-High-Quality Draft8.8x;569

text: not determined

text: Homo sapiens

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Phocaeicola coprocola DSM 17136

characteristic: organism

text: Bacteroides coprocola M16, DSM 17136

text: Reference Genome

text: not determined

text: 454-GS20, Sanger

text: DSM 17136, JCM 12979

text: DSM 17136

characteristic: strain

text: Bacteroides coprocola DSM 17136

characteristic: title

text: type strain of Bacteroides coprocola


characteristic: External Id

text: Washington University, Genome Sequencing Center

text: live

text: MIGS.ba

text: Newbler, PCAP

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Bacteroides intestinalis (GenBank Accession Number for 16S rDNA gene: AB214328) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces.

characteristic: estimated size

characteristic: feature

text: Level 3: Improved-High-Quality Draft7x;9

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

text: Homo sapiens

characteristic: host

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Bacteroides intestinalis DSM 17393

text: Bacteroides intestinalis 341, DSM 17393

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS20, Sanger

characteristic: sequencing method

text: DSM 17393, JCM 13265

text: DSM 17393

text: Bacteroides intestinalis DSM 17393

text: type strain of Bacteroides intestinalis

characteristic: type material


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: PCAP

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Coprococcus comes (16S rDNA gene sequence is not available) is a member of the Firmicutes division of the domain bacteria and has been isolated from human feces.

characteristic: description

text: human-associated habitat [ENVO:00009003]

text: Level 2: High-Quality Draft67.2x;8190

text: not determined

text: Homo sapiens

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Coprococcus comes ATCC 27758

characteristic: organism

text: Coprococcus comes ATCC 27758

text: Reference Genome

text: not determined

characteristic: sop

text: ATCC 27758

text: ATCC 27758

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Coprococcus comes ATCC 27758

text: type strain of Coprococcus comes


characteristic: External Id

text: live

text: MIGS.ba

text: PCAP

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Clostridium sporogenes (GenBank Accession Number for 16S rDNA gene: DQ911258*) is a member of the Firmicutes division of the domain bacteria and has been isolated from human feces.

characteristic: estimated size

characteristic: feature

text: Level 3: Improved-High-Quality Draft8.9x;5

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

text: Homo sapiens

characteristic: host

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Clostridium sporogenes ATCC 15579

text: Clostridium sporogenes ATCC 15579

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS20, Sanger

characteristic: sequencing method

text: ATCC 15579

text: ATCC 15579

text: MIGS Cultured Bacterial/Archaeal sample from Clostridium sporogenes ATCC 15579

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: PCAP

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Proteus penneri (GenBank Accession Number for 16S rDNA gene: DQ885258*) is a member of the Proteobacteria division of the domain bacteria and has been isolated from human feces.

characteristic: description

text: Level 2: High-Quality Draft51.7x;28

text: not determined

text: Homo sapiens

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Proteus penneri ATCC 35198

characteristic: organism

text: Proteus penneri ATCC 35198

text: Reference Genome

text: not determined

text: 454-GS-FLX, Sanger

characteristic: sop

text: ATCC 35198, CDC 4732-68

text: ATCC 35198

text: MIGS Cultured Bacterial/Archaeal sample from Proteus penneri ATCC 35198


characteristic: External Id

text: live

text: MIGS.ba

text: Newbler, PCAP

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Providencia stuartii (16S rDNA gene sequence is not available) is a member of the Proteobacteria division of the domain bacteria and has been isolated from human feces.

characteristic: estimated size

characteristic: feature

text: Level 3: Improved-High-Quality Draft8.5x;252

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

text: Homo sapiens

characteristic: host

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Providencia stuartii ATCC 25827

text: Providencia stuartii ATCC 25827

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS20, Sanger

characteristic: sequencing method

text: ATCC 35198

text: ATCC 25827

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Providencia stuartii ATCC 25827


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler, PCAP

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Bifidobacterium dentium (16S rDNA gene sequence is not available) is a member of the Actinobacteria division of the domain bacteria and has been isolated from human feces.

characteristic: description

text: Level 3: Improved-High-Quality Draft9.9x;8

text: not determined

text: Homo sapiens

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Bifidobacterium dentium ATCC 27678

characteristic: organism

text: Bifidobacterium dentium ATCC 27678

text: Reference Genome

text: not determined

text: 454-GS20, Sanger

text: ATCC 27678

text: ATCC 27678

text: MIGS Cultured Bacterial/Archaeal sample from Bifidobacterium dentium ATCC 27678

characteristic: title


characteristic: External Id

text: Washington University, Genome Sequencing Center

text: live

text: MIGS.ba

text: Newbler, PCAP

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: culture-collection

text: Ruminococcus lactaris (GenBank Accession Number for 16S rDNA gene: L76602*) is a member of the Firmicutes division of the domain bacteria and has been isolated from human feces.

characteristic: estimated size

characteristic: feature

text: Level 3: Improved-High-Quality Draft11x;81

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

text: Homo sapiens

characteristic: host

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: [Ruminococcus] lactaris ATCC 29176

text: Ruminococcus lactaris ATCC 29176

characteristic: project name

text: Reference Genome

text: not determined

text: Sanger, 454-GS20

characteristic: sop

text: ATCC 29176

text: ATCC 29176

text: MIGS Cultured Bacterial/Archaeal sample from Ruminococcus lactaris ATCC 29176

text: type strain of Ruminococcus lactaris

characteristic: type material


Oxytricha trifallax

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: none provided

characteristic: description

text: Sterkiella histriomuscorum

characteristic: organism

text: Generic sample from Sterkiella histriomuscorum

characteristic: title


Oesophagostomum dentatum

characteristic: External Id

text: live

text: Generic

text: none provided

text: total rna

characteristic: life cycle stage information

text: Oesophagostomum dentatum

text: Generic sample from Oesophagostomum dentatum


Bacteroides plebeius DSM 17135

text: live

text: MIGS.ba

text: Newbler, PCAP

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Bacteroides plebeius (GenBank Accession Number for 16S rDNA gene: AB200217) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces.

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 3: Improved-High-Quality Draft7.9x;30

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Phocaeicola plebeius DSM 17135

text: Bacteroides plebeius M12, DSM 17135

text: Reference Genome

text: not determined

text: 454-GS20, Sanger

characteristic: sequencing method

text: DSM 17135

text: Homo sapiens

characteristic: specific host

text: DSM 17135

characteristic: strain

text: Bacteroides plebeius DSM 17135

text: type strain of Bacteroides plebeius


Bacteroides dorei DSM 17855

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. post-1.1.03-Dev_01252007

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Bacteroides dorei (GenBank Accession Number for 16S rDNA gene: AB242142) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces.

characteristic: description

text: Level 2: High-Quality Draft38.4x;288

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Phocaeicola dorei DSM 17855

characteristic: organism

text: Bacteroides dorei DSM 17855

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sop

text: DSM 17855, JCM 13471

text: Homo sapiens

text: DSM 17855

text: Bacteroides dorei DSM 17855

characteristic: title

text: type strain of Bacteroides dorei

characteristic: type material


FCBT

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Methylobacterium extorquens PA1

text: Methylorubrum extorquens PA1

text: Generic sample from Methylobacterium extorquens PA1


text: live

text: Generic

text: Methanococcus maripaludis C7isolate

text: Methanococcus maripaludis C7

text: Generic sample from Methanococcus maripaludis C7


text: live

text: Generic

text: Candidatus Nitrosopumilus maritimus SCM1isolate

text: Nitrosopumilus maritimus SCM1

text: Generic sample from Nitrosopumilus maritimus SCM1

text: type strain of Nitrosopumilus maritimus


FGWC

text: live

text: Generic

text: Opitutaceae bacterium TAV2

text: Geminisphaera colitermitum TAV2

text: Generic sample from Diplosphaera colitermitum TAV2

text: type strain of Geminisphaera colitermitum


FGBU

text: live

text: Generic

text: Ralstonia pickettii 12D

text: Ralstonia pickettii 12D

text: Generic sample from Ralstonia pickettii 12D


FGWF

text: live

text: Generic

text: Victivallis vadensis ATCC BAA-548

text: Victivallis vadensis ATCC BAA-548

text: ATCC BAA-548

text: Generic sample from Victivallis vadensis ATCC BAA-548

text: type strain of Victivallis vadensis


FBFS

text: live

text: Generic

text: Bacillus selenitireducens MLS10

text: [Bacillus] selenitireducens MLS10

text: Generic sample from Bacillus selenitireducens MLS10

text: type strain of Bacillus selenitireducens


FCBS

text: live

text: Generic

text: Methylobacterium chloromethanicum CM4

text: Methylorubrum extorquens CM4

text: Generic sample from Methylobacterium chloromethanicum CM4

text: type strain of Methylobacterium chloromethanicum


FFFO

text: live

text: Generic

text: Methylobacterium populi BJ001

text: Methylorubrum populi BJ001

text: Generic sample from Methylobacterium populi BJ001

text: type strain of Methylorubrum populi


FGBP

text: live

text: Generic

text: Desulfatibacillum alkenivorans AK-01

text: Originally submitted as Desulfatibacillum alkenivorans AK-01 but changed in April 2019 because of ANI results to Desulfatibacillum aliphaticivorans

characteristic: note

text: Desulfatibacillum aliphaticivorans

text: Generic sample from Desulfatibacillum alkenivorans AK-01


FNNC

text: live

text: Generic

text: Methanococcus voltae A3

text: Methanococcus voltae A3

characteristic: strain

text: Generic sample from Methanococcus voltae A3


FNPH

characteristic: External Id

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Anaeromyxobacter sp. K

text: Anaeromyxobacter sp. K

text: K

text: Generic sample from Anaeromyxobacter sp. K


FOBC

characteristic: INSDC center name

text: live

text: Generic

text: Elusimicrobium minutum Pei191

text: Elusimicrobium minutum Pei191

text: Generic sample from Elusimicrobium minutum Pei191

text: type strain of Elusimicrobium minutum


FOWA

characteristic: INSDC first public

text: live

text: Generic

text: Methylobacterium nodulans ORS 2060

text: Methylobacterium nodulans ORS 2060

text: ORS 2060

text: Generic sample from Methylobacterium nodulans ORS 2060

text: type strain of Methylobacterium nodulans


characteristic: INSDC last update

text: live

text: Generic

text: Burkholderia ambifaria MEX-5 isolate

text: Burkholderia ambifaria MEX-5

text: Generic sample from Burkholderia ambifaria MEX-5


characteristic: INSDC secondary accession

text: live

text: Generic

text: Methylocella silvestris BL2 isolate

text: Methylocella silvestris BL2

text: Generic sample from Methylocella silvestris BL2

text: type strain of Methylocella silvestris


text: live

characteristic: INSDC status

text: Generic

text: Burkholderia ambifaria IOP40-10 isolate

text: Burkholderia ambifaria IOP40-10

text: Generic sample from Burkholderia ambifaria IOP40-10


text: live

text: Generic

characteristic: NCBI submission model

text: Paenibacillus sp. JDR-2 isolate

text: Paenibacillus sp. JDR-2

text: Generic sample from Paenibacillus sp. JDR-2


text: live

text: Generic

characteristic: NCBI submission package

text: Rhodopseudomonas palustris TIE-1isolate

text: Rhodopseudomonas palustris TIE-1

text: Generic sample from Rhodopseudomonas palustris TIE-1


text: live

text: Generic

characteristic: SRA accession

text: Anaeromyxobacter dehalogenans 2CP-1isolate

text: Anaeromyxobacter dehalogenans 2CP-1

text: Generic sample from Anaeromyxobacter dehalogenans 2CP-1


text: University of Georgia, Department of Marine Science

text: live

text: Generic

text: Subsets of bacterioplankton community metabolizing dimethylsulphoniopropionate in a coastal seawater, replicate 1.

characteristic: description

text: marine metagenome

text: Generic sample from marine metagenome


text: live

text: Generic

text: Subsets of bacterioplankton community metabolizing dimethylsulphoniopropionate in a coastal seawater, replicate 2.

text: marine metagenome

characteristic: organism

text: Generic sample from marine metagenome


text: live

text: Generic

text: Subsets of bacterioplankton community metabolizing dimethylsulphoniopropionate in a coastal seawater, resequencing 1.

text: marine metagenome

text: Generic sample from marine metagenome


text: live

text: Generic

text: Subsets of bacterioplankton community metabolizing dimethylsulphoniopropionate in a coastal seawater, resequencing 2.

text: marine metagenome

text: Generic sample from marine metagenome


text: live

text: Generic

text: Subsets of bacterioplankton community metabolizing vanillate in a coastal seawater, replicate 1.

text: marine metagenome

text: Generic sample from marine metagenome


text: live

text: Generic

text: Subsets of bacterioplankton community metabolizing vanillate in a coastal seawater, replicate 2.

text: marine metagenome

text: Generic sample from marine metagenome


text: live

text: Generic

text: Subsets of bacterioplankton community metabolizing vanillate in a coastal seawater, resequencing 1.

text: marine metagenome

text: Generic sample from marine metagenome


text: live

text: Generic

text: Subsets of bacterioplankton community metabolizing vanillate in a coastal seawater, resequencing 2.

text: marine metagenome

text: Generic sample from marine metagenome


Acanthamoeba castellani

text: Baylor College of Medicine

text: live

text: Generic

text: Acanthamoeba castellani genomic sample

text: Acanthamoeba castellanii

text: Neff

text: Generic sample from Acanthamoeba castellanii


Acyrthosiphon pisum

text: Baylor College of Medicine

text: live

text: Generic

text: Acyrthosiphon pisum genomic sample

text: Acyrthosiphon pisum

text: from the clonal line LSR1.AC.F1, produced from a single generation of inbreeding of strain LSR1

text: Generic sample from Acyrthosiphon pisum


Allocentrotus fragilis

text: Baylor College of Medicine

text: live

text: Generic

text: Allocentrotus fragilis genomic sample

text: Allocentrotus fragilis

text: Generic sample from Allocentrotus fragilis


Burkholderia sp. PVA5

text: Baylor College of Medicine

text: live

text: Generic

text: Burkholderia sp. PVA5 genomic sample

text: Paraburkholderia silvatlantica

text: Generic sample from Burkholderia sp. PVA5


Dictyostelium discoideum AX4

text: Baylor College of Medicine

text: live

text: Generic

text: Dictyostelium discoideum AX4 genomic sample

text: Dictyostelium discoideum AX4

text: Generic sample from Dictyostelium discoideum AX4


Enterococcus faecalis OG1RF

text: Baylor College of Medicine

text: live

text: Generic

text: Enterococcus faecalis OG1RF genomic sample

text: Enterococcus faecalis OG1RF

text: Generic sample from Enterococcus faecalis OG1RF


Lactobacillus reuteri SD2112

text: Baylor College of Medicine

text: live

text: Generic

text: Lactobacillus reuteri SD2112 genomic sample

text: Limosilactobacillus reuteri SD2112

text: Generic sample from Lactobacillus reuteri SD2112


Macropus eugenii

text: Baylor College of Medicine

text: live

text: Generic

text: Macropus eugenii genomic sample

text: Notamacropus eugenii

text: Generic sample from Macropus eugenii


Strongylocentrotus franciscanus

text: Baylor College of Medicine

text: live

text: Generic

text: Strongylocentrotus franciscanus genomic sample

text: Mesocentrotus franciscanus

text: Generic sample from Strongylocentrotus franciscanus


Tursiops truncatus

text: Baylor College of Medicine

text: live

text: Generic

text: Tursiops truncatus genomic sample

text: Tursiops truncatus

text: female

characteristic: sex

text: Generic sample from Tursiops truncatus


Enterococcus faecalis HH22

text: Baylor College of Medicine

text: live

text: Generic

text: Enterococcus faecalis HH22 genomic sample

text: Enterococcus faecalis EnGen0297

text: Generic sample from Enterococcus faecalis HH22


Enterococcus faecalis TX0104

text: Baylor College of Medicine

text: live

text: Generic

text: Enterococcus faecalis TX0104 genomic sample

text: Enterococcus faecalis TX0104

text: Generic sample from Enterococcus faecalis TX0104


Enterococcus faecium DO

text: Baylor College of Medicine

text: live

text: Generic

text: Enterococcus faecium DO genomic sample

text: Enterococcus faecium DO

text: DO

text: Generic sample from Enterococcus faecium DO


name: Microctonus aethiopoides venom glands RNA

text: AgResearch Limited

text: live

text: Generic

text: Dissection of venom glands: Female adult wasps, after wetting and sterilisation for 20 seconds in 70% ethanol, were held in a PBS solution in a watch glass and the ovipositor pulled from the rear of the abdomen using fine forceps under a stereomicroscope. The venom gland, venom reservoir and ovaries remained attached to the ovipositor and they could then be identified. The venom gland was removed using fine forceps and placed immediately in 30 microliters of Trizol (Invitrogen, Carlsbad, CA). The venom gland reservoir was also removed and immediately placed in 5 microliters of 4x NuPAGE LDS sample buffer (Invitrogen). In order to preserve the integrity of the samples any dissection which took longer than 2 minutes from the time of ovipositor removal until the gland or reservoir were in the appropriate buffer was abandoned. RNA extraction: To prepare RNA between 30 and 40 dissected glands were placed in 30 microliters of Trizol and processed according to the manufacturers instructions (Sigma) in a small sterile 0.6 ml polypropylene Eppendorf tube. Sterile glycogen, as suggested by the manufacturer, was added at the final ethanol precipitation step to ensure that the very small amounts of purified RNA were precipitated and could be collected by centrifugation. The RNA from the extraction was dissolved and stored in sterile, DEPC treated, distilled water at -70 degrees C. Pyroseqencing: The DNA used for sequencing was 6 micrograms amplified cDNA derived from venom RNA prepared from M. aethiopoides venom glands dissected and purified as described above. The SMART cDNA preparation protocol (Clonetech) was followed according to the manufacturers instructions using 3 microliters of RNA solution as starting material and 26 cycles of amplification. To obtain the quantity of cDNA required for sequencing (6 micrograms) the cDNA protocol was repeated three times and the amplification products were pooled.

text: Microctonus aethiopoides

text: Generic sample from Microctonus aethiopoides


Hydra magnipapillata sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Hydra magnipapillata strain 105 originated from a single polyp collected by T. Sugiyama in September, 1973 in a swamp adjacent to the National Institute of Genetics in Mishima, Japan (T. Fujisawa, unpublished information). This strain of H. magnipapillata has been propagated in labs in Japan, Europe, and North America since then.

text: Hydra vulgaris

text: Generic sample from Hydra magnipapillata


name: Drosophila melanogaster Oregon R fly embryos

text: Center for Comparative Genomics and Bioinformatics

text: live

text: Generic

text: H2A.Z nucleosomal DNA from fly embryos 0-12 hrs

text: embryos 0-12 hrs old

characteristic: developmental stage

text: Drosophila melanogaster

text: Oregon R fly

text: Generic sample from Drosophila melanogaster


Ancylostoma caninum

text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: none provided

text: Ancylostoma caninum

text: Generic sample from Ancylostoma caninum

characteristic: title


Tachyglossus aculeatus

text: live

text: Generic

text: none provided

text: Tachyglossus aculeatus

text: Generic sample from Tachyglossus aculeatus


sample 1

text: Penn State University

text: live

text: Generic

text: ESTs derived from a genetically diverse pool of larvae, pupae, and adults.

text: Melitaea cinxia

text: Generic sample from Melitaea cinxia


sample 2

text: Penn State University

text: live

text: Generic

text: Melitaea cinxia

text: Generic sample from Melitaea cinxia


text: Plymouth Marine Laboratory

text: live

text: Generic

text: Norwegian fjord

characteristic: collection place

text: Ocean acidification conditions bag from May 13th 2006. This was taken during the peak of the bloom.

text: 5 13' 20'' E

characteristic: latitude

text: 60 16' 10'' N

characteristic: longitude

characteristic: nitrate

text: marine metagenome

characteristic: pCO2 concentrations

characteristic: phosphate

characteristic: salinity

characteristic: temperature

text: Generic sample from marine metagenome


characteristic: External Id

text: Plymouth Marine Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Norwegian fjord

text: Control conditions bag from May 13th 2006. This was taken during the peak of the bloom.

text: 5 13' 20'' E

text: 60 16' 10'' N

text: marine metagenome

text: Generic sample from marine metagenome


text: Plymouth Marine Laboratory

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Norwegian fjord

text: Ocean acidification conditions bag from May 19th 2006. This was taken following the decline of the bloom.

characteristic: description

text: 5 13' 20'' E

text: 60 16' 10'' N

text: marine metagenome

characteristic: organism

text: Generic sample from marine metagenome


text: Plymouth Marine Laboratory

text: live

text: Generic

text: Norwegian fjord

characteristic: collection place

text: Control conditions bag from May 19th 2006. This was taken following the decline of the bloom.

text: 5 13' 20'' E

characteristic: latitude

text: 60 16' 10'' N

characteristic: longitude

text: marine metagenome

text: Generic sample from marine metagenome

characteristic: title


text: Max Planck Institute for Molecular Genetics

text: live

text: Generic

text: der(9) from patient 1

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: der(5) from patient 2

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: der(12) from patient 3

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: [Bacteroides] pectinophilus

text: Generic sample from [Bacteroides] pectinophilus


Activated Nucleosome

text: National Heart Lung and Blood Institute - Laboratory for Molecular Immunology

text: live

text: Generic

text: Nucleosomes identified by Mnase digestion followed by direct sequencing in human CD+ T cells activated with anti-CD3 and anti-CD28 antibodies for 18 hr.

text: Homo sapiens

text: Generic sample from Homo sapiens


Activated Ser5 phosphorylated Pol II

text: live

text: Generic

text: Ser5 phorylated Pol II identified by ChIP-Seq in human CD4+ T cells activated with anti-CD3 and anti-CD28 antibodies for 18 hr.

text: Homo sapiens

text: Generic sample from Homo sapiens


Activated Unphosphorylated Pol II

text: live

text: Generic

text: Unphosphorylated Pol II identified by ChIP-Seq in human CD4+ T cells activated with anti-CD3 and anti-CD28 antibodies for 18 hr.

text: Homo sapiens

text: Generic sample from Homo sapiens


Resting Histone H3

text: live

text: Generic

text: Histone protein H3 identified by ChIP-Seq in human resting CD4+ T cells

text: Homo sapiens

text: Generic sample from Homo sapiens


Resting Nucleosome

text: live

text: Generic

text: Nucleosomes identified by MNase digestion followed by direct sequencing in human resting CD4+ T cells

text: Homo sapiens

text: Generic sample from Homo sapiens


Resting Ser5 phosphorylated Pol II

text: live

text: Generic

text: Ser5 phosphorylated Pol II identified by ChIP-Seq in human resting CD4+ T cells

text: Homo sapiens

text: Generic sample from Homo sapiens


Resting Unphosphorylated Pol II

text: live

text: Generic

text: Unphosphorylated Pol II identified by ChIP-Seq in human resting CD4+ T cells

text: Homo sapiens

text: Generic sample from Homo sapiens


Clostridium sp. A2-232

text: The sequenced strain was obtained from the laboratory of Prof. Harry Flint, Rowett Research Institute, Aberdeen, Scotland, UK (H.Flint@rowett.ac.uk).

characteristic: DNA source

text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Clostridium sp. A2-232 (GenBank Accession Number for 16S rDNA gene: AY305305) is a member of the division Firmicutes. In one comprehensive 16S rDNA sequence-based enumeration of the colonic microbiota of three healthy adult humans, it is found in an unknown clostridial cluster XIVa (C. nexile-related) among all the 16S rDNA sequences (Eckburg et. al. (2005)). It represents 0.676% of all the 16S rDNA sequences and 1.332% of the sequences in its division (Eckburg et. al. (2005)).

text: Clostridium sp. A2-232

characteristic: strain

text: Generic sample from Clostridium sp. A2-232


Trichinella pseudospiralis

characteristic: External Id

text: live

text: Generic

text: none provided

text: Trichinella pseudospiralis

text: Generic sample from Trichinella pseudospiralis


Saccharomyces cerevisiae

characteristic: INSDC center name

text: live

text: Generic

text: none provided

text: Saccharomyces cerevisiae YJM451

text: Generic sample from Saccharomyces cerevisiae YJM451


Escherichia coli

characteristic: INSDC first public

text: live

text: Generic

text: none provided

text: Escherichia coli UTI89

text: Escherichia coli UTI89 genomic isolate


Eubacterium sp.

characteristic: INSDC last update

text: live

text: Generic

text: none provided

text: Anaerobutyricum soehngenii

text: Generic sample from Eubacterium sp. L2-7

text: type strain of Anaerobutyricum soehngenii Shetty et al. 2018

characteristic: type material


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Ornithorhynchus anatinus

text: Generic sample from Ornithorhynchus anatinus


text: live

text: Generic

characteristic: SRA accession

characteristic: description

text: Tupaia belangeri

text: Generic sample from Tupaia belangeri


text: live

text: Generic

text: Xenopus tropicalis

characteristic: organism

text: female

characteristic: sex

text: Nigerian

text: partially inbred F6; sterile

text: Generic sample from Xenopus (Silurana) tropicalis


text: Max Planck Institute for Molecular Genetics

text: live

text: Generic

text: small RNA from ATCC-CCL-2 HeLa cell line

text: Homo sapiens

text: Generic sample from Homo sapiens


text: San Diego State University

text: live

text: Generic

characteristic: clone-lib

characteristic: collection date

text: viral fraction from Gulf of Mexico

text: viral fraction from Gulf of Mexico

characteristic: isolation-source

text: marine metagenome

text: collected at latitude-longitude coordinates 25.571, -92.883; 26.839, -94.999; 27.489, -96.273; 27.547, -96.473; 27.733, -96.841; 27.838, -97.052; 27.467, -97.417; 27.501, -88.402; 27.969, -87.58; 28.562, -87.414; 29.001, -87.297; 26.475, -85.641; 25.313, -84.72

text: Generic sample from marine metagenome


Branchiostoma belcheri

text: Sun Yat-sen Univerisity

text: live

text: Generic

text: Bacterially unchallenged intestine of Branchiostoma belcheri

text: Branchiostoma belcheri

text: Generic sample from Branchiostoma belcheri

characteristic: title


characteristic: External Id

text: San Diego State University

text: live

text: Generic

text: viral fraction from Bay of British Colombia

text: marine metagenome

text: collected at latitude-longitude coordinates 49.849, -124.434; 50.186, -124.857; 50.197, -124.848; 50.028, -124.732; 50.079, -124.714; 49.975, -124.683; 50.005, -124.964; 50.122, -124.904; 49.727, -124.323; 49.828, -124.796; 50.190, -125.142; 48.801, -123.403; 49.558, -123.79; 49.682, -123.847; 49.7

text: Generic sample from marine metagenome


text: San Diego State University

characteristic: INSDC center name

text: live

text: Generic

text: viral fraction from Arctic Ocean

text: viral fraction from Arctic Ocean

text: marine metagenome

text: collected at latitude-longitude coordinates 71.729, -155.157; 72.500, -160; 72.900, -158.8; 72.500, -157; 74.585, -158.492; 74.250, -162.56; 73.667, -164.113; 72.500, -151.333; 70.875, -133.967; 70.367, -133.6; 70.367, -133.6; 69.896, -139.5; 69.400, -138; 70.200, -137

text: Generic sample from marine metagenome


text: San Diego State University

characteristic: INSDC first public

text: live

text: Generic

text: viral fraction from Sargasso Sea

text: viral fraction from Sargasso Sea

text: 32.167 N 64.50 W

characteristic: lat lon

text: marine metagenome

text: Generic sample from marine metagenome


text: San Diego State University

characteristic: INSDC last update

text: live

text: Generic

text: microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Kingman Atoll (Northern Line Islands)

text: 6.38566685 N 162.3347778 W

text: marine metagenome

text: Generic sample from marine metagenome


text: San Diego State University

characteristic: INSDC secondary accession

text: live

text: Generic

text: viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Kingman Atoll (Northern Line Islands)

text: 6.38566685 N 162.3347778 W

text: marine metagenome

text: Generic sample from marine metagenome


text: San Diego State University

text: live

characteristic: INSDC status

text: Generic

text: microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (aka, Kirtimati; Northern Line Islands)

text: microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands)

text: 1.99231672 N 157.4840698 W

text: marine metagenome

text: Generic sample from marine metagenome


text: San Diego State University

text: live

text: Generic

characteristic: NCBI submission model

text: viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (aka, Kirtimati; Northern Line Islands)

text: viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands)

text: 1.99231672 N 157.4840698 W

text: marine metagenome

text: Generic sample from marine metagenome


text: San Diego State University

text: live

text: Generic

characteristic: NCBI submission package

text: microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico

text: 26.985876 N 102.066391 W

text: stromatolite metagenome

text: Generic sample from stromatolite metagenome


text: San Diego State University

text: live

text: Generic

characteristic: SRA accession

text: viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico

text: 26.985876 N 102.066391 W

text: stromatolite metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico

characteristic: description

text: 26.985876 N 102.066391 W

text: stromatolite metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from low salinity saltern in San Diego, CA

text: 32.599041 N 117.107353 W

text: saltern metagenome

characteristic: organism

text: Generic sample from saltern metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)

text: 33.537594 N 116.097748 W

text: freshwater metagenome

text: Generic sample from freshwater metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands)

text: 5.86683321 N 162.12796021 W

text: marine metagenome

text: Generic sample from marine metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Palmyra (Northern Line Islands)

text: 5.86683321 N 162.12796021 W

text: marine metagenome

text: Generic sample from marine metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (aka, Tabuaeran; Northern Line Islands)

text: microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (Tabuaeran; Northern Line Islands)

text: 3.82594991 N 159.34956360 W

text: marine metagenome

text: Generic sample from marine metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (aka, Tabuaeran; Northern Line Islands)

text: viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (Tabuaeran; Northern Line Islands)

text: 3.82594991 N 159.34956360 W

text: marine metagenome

text: Generic sample from marine metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from low salinity saltern in San Diego, CA

text: 32.599041 N 117.107353 W

text: saltern metagenome

text: Generic sample from saltern metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from medium salinity saltern in San Diego, CA

text: 32.599041 N 117.107353 W

text: saltern metagenome

text: Generic sample from saltern metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from medium salinity saltern in San Diego, CA

text: 32.599041 N 117.107353 W

text: saltern metagenome

text: Generic sample from saltern metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from Highborne Cay microbiolite in the Bahamas

text: 24.709875 N 76.822517 W

text: stromatolite metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from Highborne Cay microbiolite in the Bahamas

text: 24.709875 N 76.822517 W

text: stromatolite metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from Pozas Azules II stromatolite in Mexico

text: 26.985876 N 102.066391 W

text: stromatolite metagenome

text: Generic sample from stromatolite metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)

text: 33.537594 N 116.097748 W

text: freshwater metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease

text: 33.537594 N 116.097748 W

text: fish metagenome

text: Generic sample from fish metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling

text: 33.537594 N 116.097748 W

text: fish metagenome

text: Generic sample from fish metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease

text: 33.537594 N 116.097748 W

text: fish metagenome

text: Generic sample from fish metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling

text: 33.537594 N 116.097748 W

text: fish metagenome

text: Generic sample from fish metagenome


text: San Diego State University

text: live

text: Generic

text: viral community isolated from the gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish showed no sign of disease)

text: 33.537594 N 116.097748 W

text: fish metagenome

text: Generic sample from fish metagenome


text: San Diego State University

text: live

text: Generic

text: viral community isolated from the gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA, fish were sick at time of sampling)

text: 33.537594 N 116.097748 W

text: fish metagenome

text: Generic sample from fish metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease

text: 33.537594 N 116.097748 W

text: fish metagenome

text: Generic sample from fish metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish were sick at time of sampling)

text: 33.537594 N 116.097748 W

text: fish metagenome

text: Generic sample from fish metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)

text: 33.537594 N 116.097748 W

text: freshwater metagenome

text: Generic sample from freshwater metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)

text: 33.537594 N 116.097748 W

text: freshwater metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)

text: 33.537594 N 116.097748 W

text: freshwater metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from prebead pond at Kent SeaTech (Salton Sea, CA)

text: 33.537594 N 116.097748 W

text: freshwater metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from whole Porites compressa tissue extracts taken directly off the reef at the Hawai'i Marine Laboratory Refuge Point Reef Corals collected 3 meters apart and at 3 meters depth and rinsed extensively in filtered autoclaved seawater before processing

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from whole Porites compressa tissue extracts taken from an aquarium control experiment that consisted of 5 liters of ambient seawater that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from whole Porites compressa tissue extracts taken from a temperature stressor experiment that consisted of 5 liters of 30oC seawater that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from whole Porites compressa tissue extracts taken from a dissolved organic carbon (DOC) stressor experiment that consisted of 5 liters of ambient seawater with 125 mg of additional glucose (25 mg / L) that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: viral fraction from whole Porites compressa tissue extracts taken from a dissolved organic carbon (DOC) stressor experiment that consisted of 5 liters of ambient seawater with 125 mg of additional glucose (25 mg/L) that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from whole Porites compressa tissue extracts taken from a reduced pH stressor experiment that consisted of 5 liters of seawater with molecular grade HCl added to a final pH 68 that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


text: San Diego State University

text: live

text: Generic

text: viral fraction from whole Porites compressa tissue extracts taken from a nutrient stressor experiment that consisted of 5 liters of ambient seawater with additional 10 mM excess of each: nitrate (Ca(NO3)2), nitrite (NaNO2), ammonium (NH4Cl), and phosphate (KH2PO4) that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from whole Porites compressa tissue extracts taken directly off the reef at the Hawai'i Marine Laboratory Refuge Point Reef Corals collected 3 meters apart and at 3 meters depth and rinsed extensively in filtered autoclaved seawater before processing

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from whole Porites compressa tissue extracts taken from an aquarium control experiment that consisted of 5 liters of ambient seawater that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from whole Porites compressa tissue extracts taken from a temperature stressor experiment that consisted of 5 liters of 30oC seawater that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from whole Porites compressa tissue extracts taken from a dissolved organic carbon (DOC) stressor experiment that consisted of 5 liters of ambient seawater with 125 mg of additional glucose (25 mg / L) that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: microbial fraction from whole Porites compressa tissue extracts taken from a dissolved organic carbon (DOC) stressor experiment that consisted of 5 liters of ambient seawater with 125 mg of additional glucose (25 mg/L) that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from whole Porites compressa tissue extracts taken from a reduced pH stressor experiment that consisted of 5 liters of seawater with molecular grade HCl added to a final pH 68 that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


text: San Diego State University

text: live

text: Generic

text: microbial fraction from whole Porites compressa tissue extracts taken from a nutrient stressor experiment that consisted of 5 liters of ambient seawater with additional 10 mM excess of each: nitrate (Ca(NO3)2), nitrite (NaNO2), ammonium (NH4Cl), and phosphate (KH2PO4) that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours

text: 21.434025 N 157.787827 W

text: coral metagenome

text: Generic sample from coral metagenome


H3 nucleosome sample #1

text: Center for Comparative Genomics and Bioinformatics

text: live

text: Generic

text: Yeast BY4741 strain with with histone H3 TAP-tagged.

text: Saccharomyces cerevisiae

characteristic: strain

text: Generic sample from Saccharomyces cerevisiae


H3 nucleosome sample #2

text: live

text: Generic

text: Saccharomyces cerevisiae


H4 nucleosome sample #1

text: live

text: Generic

text: Saccharomyces cerevisiae


Brassica napus sample 1

text: Oil Crops Research Institute

text: live

text: Generic

text: Brassica napus (rapeseed) mRNA

text: Brassica napus

text: Generic sample from Brassica napus


Brassica napus sample 2

text: Oil Crops Research Institute

text: live

text: Generic

text: Brassica napus (rapeseed) mRNA

text: Brassica napus

text: Generic sample from Brassica napus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Mouse embryonic fibroblasts (E14.5) Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: Mouse embryonic fibroblasts (E14.5)

characteristic: source

characteristic: starin

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: CD8 T lymphocytes Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: CD8 T lymphocytes

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Astrocytes Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: Astrocytes

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Sox1 progenitor cells (ES-derived) Characteristics: Strain 129SvJae[Sox1-GFP]

text: Mus musculus

text: Sox1 progenitor cells (ES-derived)

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Neural progenitor cells (ES-derived) Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: Neural progenitor cells (ES-derived)

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Whole brain Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: Whole brain

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Liver Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: Liver

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Mus musculus

text: B lymphocytes

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Spleen Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: Spleen

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: CD4 T lymphocytes Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: CD4 T lymphocytes

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Astrocytes (ES-derived) Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: Astrocytes (ES-derived)

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Neural progenitor cells (Sox1 -derived) Characteristics: Strain 129SvJae[Sox1-GFP]

text: Mus musculus

text: Neural progenitor cells (Sox1 -derived)

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Methylation-deficient ES cells Characteristics: Strain 129SvJae/C57/B6[Dnmt1kd,Dnmt3a-/-,Dnmt3b-/-]

text: Mus musculus

text: Methylation-deficient ES cells

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Lung Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: Lung

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Tail-tip fibroblasts Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: Tail-tip fibroblasts

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: Source: Embyonic stem cells (V6.5) Characteristics: Strain 129SvJae/C57/B6

text: Mus musculus

text: Embyonic stem cells (V6.5)

text: Generic sample from Mus musculus


text: UNCC

text: live

text: Generic

text: Activated sludge from the aerobic basin of a North Carolina Wastewater Treatment Plant in Charlotte, NC was collected on the morning of March 20 2007. DNA was extracted using Mo Bio UltraClean Water DNA kit and was sequenced using the 454-FLX technology

text: wastewater metagenome

text: Generic sample from wastewater metagenome


text: Gene Expression Omnibus

text: live

text: Generic

text: WT female heads Heads were dissected from Oregon R adult female flies as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)).

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


text: Gene Expression Omnibus

text: live

text: Generic

text: WT male heads Heads were dissected from Oregon R adult male flies as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)).

text: Drosophila melanogaster


text: Gene Expression Omnibus

text: live

text: Generic

text: WT heads expressing an inverted repeat of white exon 3 Heads were dissected from adult flies expressing an inverted repeat directed against white (Lee et al., Cell 117:69-81 (2004); Lee and Carthew, Methods 30: 322-329 (2003) as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)).

text: Drosophila melanogaster


text: Gene Expression Omnibus

text: live

text: Generic

text: ago2 mutant heads Heads were dissected from ago2 mutant adult flies (ago2^{414} allele described in Okamura et al. (2004) Genes Dev. 18:1655-1666) as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)).

text: Drosophila melanogaster


text: Gene Expression Omnibus

text: live

text: Generic

text: dcr-2 mutant heads Heads were dissected from dcr-2 mutant adult flies (dcr-2^{L811fsX} allele described in Lee et al. (2004) Cell 117(1):69-81) as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)).

text: Drosophila melanogaster


text: Gene Expression Omnibus

text: live

text: Generic

text: homozygous dcr-2 mutant heads Heads were dissected from dcr-2 mutant adult flies (dcr-2^{L811fsX} allele described in Lee et al. (2004) Cell 117(1):69-81) as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)).

text: Drosophila melanogaster


text: Gene Expression Omnibus

text: live

text: Generic

text: heterozygous dcr-2 mutant heads Heads were dissected from dcr-2 heterozygous adult flies (dcr-2^{L811fsX} allele described in Lee et al. (2004) Cell 117(1):69-81, over CyO balancer chromosome) as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)).

text: Drosophila melanogaster


text: Gene Expression Omnibus

text: live

text: Generic

text: WT heads expressing an inverted repeat of white exon 3 Heads were dissected from adult flies expressing an inverted repeat directed against white (Lee et al., Cell 117:69-81 (2004); Lee and Carthew, Methods 30: 322-329 (2003)) as described in Seitz et al. (Curr. Biol. 18:147-151 (2008)).

text: Drosophila melanogaster


RudSoil sample #1

text: Center for Comparative Genomics and Bioinformatics

text: live

text: Generic

text: total RNA from a soil community

text: soil metagenome

text: Generic sample from soil metagenome


text: live

text: Generic

characteristic: depth

text: subseafloor sediments from ODP Leg 201, Site 1229; 16 meters below seafloor

text: marine sediment metagenome

text: Generic sample from marine sediment metagenome


text: live

text: Generic

text: subseafloor sediments from ODP Leg 201, Site 1229; 32 meters below seafloor

text: marine sediment metagenome

characteristic: title


characteristic: External Id

text: live

text: Generic

text: subseafloor sediments from ODP Leg 201, Site 1229; 1 meter below seafloor

text: marine sediment metagenome


CDC1873-00 sample

text: J. Craig Venter Institute

characteristic: INSDC center name

text: live

text: Generic

text: Strain CDC1873-00, serotype 6A, MLST type ST376, new, prevalent, mef-associated resistance. DNA extracted with INVITROGEN Easy DNA kit, washed with 80% and 70% ethanol, and resuspended in TE and RNAse 1ul/40ul TE for 30' at 37 degrees C

text: Streptococcus pneumoniae CDC1873-00

text: Generic sample from Streptococcus pneumoniae CDC1873-00


SP195 sample

text: J. Craig Venter Institute

characteristic: INSDC first public

text: live

text: Generic

text: Strain SP195, serotype 9V, MLST type ST156, N/A. DNA extracted with INVITROGEN Easy DNA kit, washed with 80% and 70% ethanol, and resuspended in TE and RNAse 1ul/40ul TE for 30' at 37 degrees C

text: Streptococcus pneumoniae SP195

text: Generic sample from Streptococcus pneumoniae SP195


CDC0288-04 sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Strain CDC0288-04, serotype 12F, MLST type ST220, important since vaccination occurred, high attack ratio, outbreaks DNA extracted with INVITROGEN Easy DNA kit, washed with 80% and 70% ethanol, and resuspended in TE and RNAse 1ul/40ul TE for 30' at 37 degrees C

text: Streptococcus pneumoniae CDC0288-04

text: Generic sample from Streptococcus pneumoniae CDC0288-04


MLV-016 sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Strain ML,V-016, serotype 11A, MLST type ST62, carriage association. DNA extracted with INVITROGEN Easy DNA kit, washed with 80% and 70% ethanol, and resuspended in TE and RNAse 1ul/40ul TE for 30' at 37 degrees C

text: Streptococcus pneumoniae MLV-016

text: Generic sample from Streptococcus pneumoniae MLV-016


sp108700 sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Strain CDC1087-00, serotype 7F, MLST type ST191, outbreak association, high attack ratio DNA extracted with INVITROGEN Easy DNA kit, washed with 80% and 70% ethanol, and resuspended in TE and RNAse 1ul/40ul TE for 30' at 37 degrees C

text: Streptococcus pneumoniae CDC1087-00

text: Generic sample from Streptococcus pneumoniae CDC1087-00


CDC3059-06 sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Strain CDC3059-06, serotype 19A, MLST type ST199, major 19A, disease associated clone, post-vaccine-associated increase, plasticity, COPD exacerbation DNA extracted with INVITROGEN Easy DNA kit, washed with 80% and 70% ethanol, and resuspended in TE and RNAse 1ul/40ul TE for 30' at 37 degrees C

text: Streptococcus pneumoniae CDC3059-06

text: Generic sample from Streptococcus pneumoniae CDC3059-06


Soybean Globular-Stage Seeds

text: UCLA Dept of Molecular Cell and Developmental Biology

text: live

text: Generic

text: Soybean cv. Asgrow A3237 Soybean were grown in the UCLA Plant Growth Center with a 16:8 light-dark cycle at 22 Celcius

text: Glycine max

text: Generic sample from Glycine max


name: Nothobranchius furzeri whole genome sequencing

text: Institute of Molecular Biotechnology Genome Analysis

text: live

text: Generic

text: Nothobranchius furzeri genomic sample

text: Nothobranchius furzeri

text: male

characteristic: sex

text: GRZ

text: Generic sample from Nothobranchius furzeri


Porphyromonas gingivalis W83 Sample

text: J. Craig Venter Institute

characteristic: INSDC last update

text: live

text: Generic

text: Porphyromonas gingivalis W83

text: Porphyromonas gingivalis W83

text: Generic sample from Porphyromonas gingivalis W83


name: Escherichia coli str. K-12 substr. MG1655 Sample

text: J. Craig Venter Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Escherichia coli strain K-12 substrain MG1655

characteristic: substrain

text: Generic sample from Escherichia coli str. K-12 substr. MG1655


Cryptosporidium muris sample

text: J. Craig Venter Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Cryptosporidium muris RN66

text: Cryptosporidium muris

text: Generic sample from Cryptosporidium muris


mouse brain transcriptome

text: Wold Lab/Caltech

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Mapping and quantifying mammalian transcriptomes by RNA-Seq

text: Mus musculus

text: Generic sample from Mus musculus


mouse liver transcriptome

text: Wold Lab/Caltech

text: live

text: Generic

text: Quantitative analysis of mouse adult liver polyA selected RNA

characteristic: description

text: Mus musculus

characteristic: organism

text: Generic sample from Mus musculus


mouse skeletal muscle transcriptome

text: Wold Lab/Caltech

text: live

text: Generic

text: Quantitative analysis of mouse adult skeletal muscle polyA selected RNA

text: Mus musculus

text: Generic sample from Mus musculus


CTCF

text: National Heart Lung and Blood Institute - Laboratory for Molecular Immunology

text: live

text: Generic

text: Insulator binding protein CTCF in human blood CD4+ T cells, targeted using Upstate antibody 07-729

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: histone variant H2A.Z in human blood CD4+ T cells, targeted using Abcam antibody ab4174-100

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H2B mono-methylated at lysine 5 (H2BK5me1) in human blood CD4+ T cells, targeted using Abcam antibody ab12929

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 mono-methylated at lysine 27 (H3K27me1) in human blood CD4+ T cells, targeted using Upstate antibody 07-448

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 di-methylated at lysine 27 (H3K27me2) in human blood CD4+ T cells, targeted using Abcam antibody ab24684

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 tri-methylated at lysine 27 (H3K27me3) in human blood CD4+ T cells, targeted using Upstate antibody 07-449

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 mono-methylated at lysine 36 (H3K36me1) in human blood CD4+ T cells, targeted using Abcam antibody ab9048

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 tri-methylated at lysine 36 (H3K36me3) in human blood CD4+ T cells, targeted using Abcam antibody ab9050

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 mono-methylated at lysine 4 (H3K4me1) in human blood CD4+ T cells, targeted using Abcam antibody ab8895

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 di-methylated at lysine 4 (H3K4me2) in human blood CD4+ T cells, targeted using Abcam antibody ab7766

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 tri-methylated at lysine 4 (H3K4me3) in human blood CD4+ T cells, targeted using Abcam antibody ab8580

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 mono-methylated at lysine 79 (H3K79me1) in human blood CD4+ T cells, targeted using Abcam antibody ab2886

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 di-methylated at lysine 79 (H3K79me2) in human blood CD4+ T cells, targeted using Abcam antibody ab3594

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 tri-methylated at lysine 79 (H3K79me3) in human blood CD4+ T cells, targeted using Abcam antibody ab2621

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 mono-methylated at lysine 9 (H3K9me1) in human blood CD4+ T cells, targeted using Abcam antibody 8896

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 di-methylated at lysine 9 (H3K9me2) in human blood CD4+ T cells, targeted using Abcam antibody 1220

text: Homo sapiens

text: Generic sample from Homo sapiens


text: National Heart Lung and Blood Institute - Laboratory for Molecular Immunology

text: live

text: Generic

text: Human histone H3 tri-methylated at lysine 9 (H3K9me3) in human blood CD4+ T cells, targeted using Abcam antibody 8898

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Human histone H3 mono-methylated at arginine 2 (H3R2me1) in human blood CD4+ T cells, targeted using Abcam antibody ab15584

text: Homo sapiens

text: Generic sample from Homo sapiens