text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 63

text: mRRBS 63


status: PUBLIC

characteristic: External Id

text: Meissner Lab, Harvard University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: mrrbs library

text: Homo sapiens

characteristic: organism

text: mRRBS library 64

text: mRRBS 64

characteristic: title


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 65

text: mRRBS 65


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 66

text: mRRBS 66


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 67

text: mRRBS 67


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 68

text: mRRBS 68


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 69

text: mRRBS 69


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 70

text: mRRBS 70


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 71

text: mRRBS 71


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 72

text: mRRBS 72


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 73

text: mRRBS 73


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 74

text: mRRBS 74


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 75

text: mRRBS 75


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 76

text: mRRBS 76


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 77

text: mRRBS 77


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 78

text: mRRBS 78


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 79

text: mRRBS 79


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 80

text: mRRBS 80


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 81

text: mRRBS 81


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 82

text: mRRBS 82


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 83

text: mRRBS 83


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 84

text: mRRBS 84


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 85

text: mRRBS 85


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 86

text: mRRBS 86


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 87

text: mRRBS 87


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 88

text: mRRBS 88


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 89

text: mRRBS 89


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 90

text: mRRBS 90


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 91

text: mRRBS 91


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 92

text: mRRBS 92


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 93

text: mRRBS 93


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 94

text: mRRBS 94


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 95

text: mRRBS 95


text: Meissner Lab, Harvard University

text: live

text: Generic

text: Homo sapiens

text: mRRBS library 96

text: mRRBS 96


text: INGEBI-CONICET

text: live

text: Generic

text: Name Units Value depth m 0-0.1 elev m 112 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use meadows cur_vegetation_meth Cabrera (1976) and field observation cur_vegetation Native Pampa grassland, at present invaded by exotic grasses drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition No addition of fertilizers, pesticides, etc. crop_rotation N/A extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use meadows tillage N/A horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 910 annual_season_temp ºC 17 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.8 ph 5.6 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.01 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Typic Argiudoll fao_class Luvic Phaeozem local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Typic Argiudoll store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Silt loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.328 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 3.5 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

characteristic: description

text: soil metagenome

text: Natural Environment Monte Buey C*rdoba Argentina


CML52 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: CML52 rep 1


CML103 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: CML103 rep 1


CML228 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: CML228 rep 1


text: INGEBI-CONICET

text: live

text: Generic

text: Natural Environment bengolea Cordoba Argentina Name Units Value depth m 0-0.1 elev m 224 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use meadows cur_vegetation_meth Cabrera (1976) and field observation cur_vegetation Native Pampa grassland, at present invaded by exotic grasses drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition No addition of fertilizers, pesticides, etc. crop_rotation N/A extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use meadows tillage N/A horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 870 annual_season_temp ºC 17 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.5 ph 6.3 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.5 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Entic Haplustoll fao_class Haplic Phaeozem local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Entic Haplustoll store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Sandy loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.146 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 1.7 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

text: soil metagenome


text: INGEBI-CONICET

text: live

text: Generic

text: Natural Environment Viale Entre Rios Argentina Name Units Value depth m 0-0.1 elev m 73 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use meadows cur_vegetation_meth Cabrera (1976) and field observation cur_vegetation Native Espinal: xeric deciduous shrubland forest, at present invaded by exotic species drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition No addition of fertilizers, pesticides, etc. crop_rotation N/A extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use meadows tillage N/A horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 1160 annual_season_temp ºC 18 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.14 ph 6.4 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.75 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Argic Pelludert fao_class Pellic Vertisol local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Argic Pelludert store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Silty clay / Silty clay loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.369 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 5 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

text: soil metagenome


text: INGEBI-CONICET

text: live

text: Generic

text: Natural Environment Pergamino Buenos Aires Argentina Name Units Value depth m 0-0.1 elev m 64 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use meadows cur_vegetation_meth Cabrera (1976) and field observation cur_vegetation Native Pampa grassland, at present invaded by exotic grasses drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition No addition of fertilizers, pesticides, etc. crop_rotation N/A extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use meadows tillage N/A horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 1000 annual_season_temp ºC 16 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.11 ph 6.2 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.25 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Typic Argiudoll fao_class Luvic Phaeozem local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Typic Argiudoll store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Silt loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.233 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 2.7 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

text: soil metagenome


text: INGEBI-CONICET

text: live

text: Generic

text: Poor Agricultural Practices Monte Buey Cordoba Argentina Name Units Value depth m 0-0.1 elev m 108 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use row crops cur_vegetation_meth Field observation cur_vegetation Soybean stubble drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition Liters of low-toxicity herbicides plus liters of moderate-toxicity herbicides weighted by two (Toxicity defined according to EPA Toxicity Categories). Average for the last 5 years (2005-2009): 38,9 L crop_rotation Last 5 years rotations: Wheat / Soybean; Maize; Soybean; Soybean; Soybean extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use row crops/cattle raising tillage No tillage horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 910 annual_season_temp ºC 17 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.10 ph 6.2 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.2 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Typic Argiudoll fao_class Luvic Phaeozem local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Typic Argiudoll store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Silt loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.132 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 1.7 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

text: soil metagenome

text: Poor Agricultural Practices Monte Buey C*rdoba Argentina


text: INGEBI-CONICET

text: live

text: Generic

text: Good Agricultural Practices Monte Buey Cordoba Argentina Name Units Value depth m 0-0.1 elev m 111 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use row crops cur_vegetation_meth Field observation cur_vegetation Wheat drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition Liters of low-toxicity herbicides plus liters of moderate-toxicity herbicides weighted by two (Toxicity defined according to EPA Toxicity Categories). Average for the last 5 years (2005-2009): 25,2 L crop_rotation Last 5 years rotations: Maize; Wheat / Soybean; Vicia / Maize; Maize; Wheat / Soybean extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use row crops/cattle raising tillage No tillage horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 910 annual_season_temp ºC 17 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.9 ph 5.5 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.5 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Typic Argiudoll fao_class Luvic Phaeozem local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Typic Argiudoll store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Silt loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.181 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 2.1 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

text: soil metagenome


text: INGEBI-CONICET

text: live

text: Generic

text: Poor Agricultural Practices Bengolea Cordoba Argentin Name Units Value depth m 0-0.1 elev m 223 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use row crops cur_vegetation_meth Field observation cur_vegetation Soybean stubble drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition Liters of low-toxicity herbicides plus liters of moderate-toxicity herbicides weighted by two (Toxicity defined according to EPA Toxicity Categories). Average for the last 5 years (2005-2009): 43,8 L crop_rotation Last 5 years rotations: Wheat/ Soybean; Soybean; Wheat/ Soybean; Soybean; Maize extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use row crops/cattle raising tillage No tillage horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 870 annual_season_temp ºC 17 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.7 ph 6.2 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.5 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Entic Haplustoll fao_class Haplic Phaeozem local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Entic Haplustoll store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Sandy loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.125 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 1.1 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

text: soil metagenome


text: INGEBI-CONICET

text: live

text: Generic

text: Good Agricultural Practices Bengolea Cordoba Argentina Name Units Value depth m 0-0.1 elev m 222 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use row crops cur_vegetation_meth Field observation cur_vegetation Soybean stubble drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition Liters of low-toxicity herbicides plus liters of moderate-toxicity herbicides weighted by two (Toxicity defined according to EPA Toxicity Categories). Average for the last 5 years (2005-2009): 27,7 L crop_rotation Last 5 years rotations: Maize; Wheat/Soybean; Vicia/Maize; Wheat/ Soybean; Soybean extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use row crops/cattle raising tillage No tillage horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 870 annual_season_temp ºC 17 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.6 ph 6.2 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.75 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Entic Haplustoll fao_class Haplic Phaeozem local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Entic Haplustoll store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Sandy loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.156 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 1.5 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

text: soil metagenome


text: INGEBI-CONICET

text: live

text: Generic

text: Poor Agricultural Practices Viale Entre Rios Argentina Name Units Value depth m 0-0.1 elev m 81 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use row crops cur_vegetation_meth Field observation cur_vegetation Soybean stubble drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition Liters of low-toxicity herbicides plus liters of moderate-toxicity herbicides weighted by two (Toxicity defined according to EPA Toxicity Categories). Average for the last 5 years (2005-2009): 43,1 L crop_rotation Last 5 years rotations: Soybean; Wheat/ Soybean; Maize; Soybean; Soybean extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use row crops/cattle raising tillage No tillage horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 1160 annual_season_temp ºC 18 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.16 ph 6.3 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.2 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Argic Pelludert fao_class Pellic Vertisol local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Argic Pelludert store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Silty clay / Silty clay loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.179 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 2.5 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

text: soil metagenome


text: INGEBI-CONICET

text: live

text: Generic

text: Good Agricultural Practices Viale Entre Rios Argentina Name Units Value depth m 0-0.1 elev m 80 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use row crops cur_vegetation_meth Field observation cur_vegetation Maize stubble drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition Liters of low-toxicity herbicides plus liters of moderate-toxicity herbicides weighted by two (Toxicity defined according to EPA Toxicity Categories). Average for the last 5 years (2005-2009): 34,5 L crop_rotation Last 5 years rotations: Ryegrass+Melilotus/Maize; Soybean; Wheat/ Soybean; Maize; Soybean; extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use row crops/cattle raising tillage No tillage horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 1160 annual_season_temp ºC 18 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.15 ph 6.7 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.75 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Argic Pelludert fao_class Pellic Vertisol local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Argic Pelludert store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Silty clay / Silty clay loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.283 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 3.5 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

text: soil metagenome


text: INGEBI-CONICET

text: live

text: Generic

text: Poor Agricultural Practices Pergamino Buenos Aires Argentin Name Units Value depth m 0-0.1 elev m 65 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use row crops cur_vegetation_meth Field observation cur_vegetation Soybean stubble drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition Liters of low-toxicity herbicides plus liters of moderate-toxicity herbicides weighted by two (Toxicity defined according to EPA Toxicity Categories). Average for the last 5 years (2005-2009): 46,5 L crop_rotation Last 5 years rotations: Soybean; Soybean; Soybean; Soybean; Soybean extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use row crops/cattle raising tillage No tillage horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 1000 annual_season_temp ºC 16 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.13 ph 5.7 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.5 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Typic Argiudoll fao_class Luvic Phaeozem local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Typic Argiudoll store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Silt loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.136 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 1.8 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

text: soil metagenome


text: INGEBI-CONICET

text: live

text: Generic

text: Good Agricultural Practices Pergamino Buenos Aires Argentina Name Units Value depth m 0-0.1 elev m 68 alt N/A sieving Soil sample composed by 16-20 randomly selected subsamples, homogenized in the field, 10-15 g sieved through 2-mm mesh in the lab. cur_land_use row crops cur_vegetation_meth Field observation cur_vegetation Soybean stubble drainage_class well al_sat_meth N/D al_sat N/D heavy_metals_meth N/D heavy_metals N/D salinity_meth N/D extreme_salinity N/D agrochem_addition Liters of low-toxicity herbicides plus liters of moderate-toxicity herbicides weighted by two (Toxicity defined according to EPA Toxicity Categories). Average for the last 5 years (2005-2009): 29,3 L crop_rotation Last 5 years rotations: Wheat/ Soybean; Maize; Soybean; Wheat/ Soybean; Maize extreme_event No fire No flooding No previous_land_use_meth Surveys to landowners previous_land_use row crops/cattle raising tillage No tillage horizon_meth Field observation horizon A horizon link_class_info http://geointa.inta.gov.ar/visor/?p=model_suelos link_climate_info http://inta.gob.ar/documentos/atlas-climatico-digital-de-la-republica-argentina-1/ link_addit_analys annual_season_precpt mm 1000 annual_season_temp ºC 16 microbial_biomass_meth microbial_biomass misc_param other ph_meth Potentiometric method, soil-water relationship 1:2.12 ph 6 pool_dna_extracts No profile_position Toeslope sample_size g 500 samp_weight_dna_ext g 0.5 slope_aspect N/A slope_gradient 0.5 soil_type_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) soil_type Typic Argiudoll fao_class Luvic Phaeozem local_class_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) local_class Typic Argiudoll store_cond texture_meth INTA soil map (http://geointa.inta.gov.ar/visor/?p=model_suelos) texture Silt loam tot_n_meth Dry combustion using a LECO CN analyzer tot_n % 0.153 tot_org_c_meth Dry combustion using a LECO CN analyzer tot_org_carb % 1.7 water_content_soil_meth water_content_soil N/A: Not applicable N/D: Not determined Cabrera, A. L., “Regiones fitogeográficas argentinas”, Enciclopedia Argentina de agricultura y jardinería, Buenos Aires, Editorial ACME S.A.I.C., 1976, 85 pp.

text: soil metagenome


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: unclassified bacterial viruses

text: Sample from unclassified bacterial viruses


CML247 rep 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: CML247 rep 2


CML277 rep 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: CML277 rep 2


CML322 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: CML322 rep 1


CML333 rep 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: CML333 rep 2


Hp301 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Hp301 rep 1


Il14h rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Il14h rep 1


Ki3 rep 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Ki3 rep 2


Ki11 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Ki11 rep 1


Ki11 rep 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Ki11 rep 2


Ki11 rep 3

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Ki11 rep 3


text: Bioinformatics, IGIB

text: live

text: Generic

characteristic: cell line

text: anti-c-Myc monoclonal, Clone 9E10

characteristic: chip antibody

text: Sigma

characteristic: chip vendor

text: Homo sapiens

text: A549 cells

text: lung carcinoma

characteristic: tissue

text: NME2 Chip-seq Replicate 1(after NME2 induced A549)

text: myc-tagged pcDNA3-NME2

characteristic: transfected


characteristic: External Id

text: Bioinformatics, IGIB

characteristic: INSDC center name

text: live

text: Generic

text: anti-c-Myc monoclonal, Clone 9E10

text: Sigma

text: Homo sapiens

text: A549 cells

text: lung carcinoma

text: NME2 Chip-seq Replicate 2(after NME2 induced A549)

text: myc-tagged pcDNA3-NME2


text: Bioinformatics, IGIB

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: anti-nm23-h2 (L-16)

text: Homo sapiens

text: A549 cells

text: lung carcinoma

text: NME2 Chip-seq Replicate 1(before NME2 induced A549)


text: Bioinformatics, IGIB

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: anti-nm23-h2 (L-16)

text: Homo sapiens

text: A549 cells

text: lung carcinoma

text: NME2 Chip-seq Replicate 2(before NME2 induced A549)


text: Bioinformatics, IGIB

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Homo sapiens

text: IgG control (goat)

characteristic: sample type

text: A549 cells

text: lung carcinoma

text: IgG (after NME2 induced A549)

text: myc-tagged pcDNA3-NME2


text: Bioinformatics, IGIB

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

characteristic: organism

text: IgG control (mouse)

text: A549 cells

text: lung carcinoma

text: IgG (before NME2 induced A549)


M37w rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: M37w rep 1

characteristic: title


M37w rep 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: M37w rep 2


M162w rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: M162w rep 1


Mo17 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Mo17 rep 1


Mo17 rep 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Mo17 rep 2


Mo17 rep 3

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Mo17 rep 3


Mo18w rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Mo18w rep 2


MS71 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: MS71 rep 1


MS71 rep 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: MS71 rep 2


MS71 rep 3

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: MS71 rep 3


NC358 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: NC358 rep 1


text: DOE Joint Genome Institute

text: live

text: Generic

text: Brachypodium distachyon BdTR8i

characteristic: description

text: Brachypodium distachyon

characteristic: sample number

characteristic: strain

text: Sample from Brachypodium distachyon


Oh7b rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Oh7b rep 1


Oh43 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Oh43 rep 1


Oh43 rep 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Oh43 rep 2


Oh43 rep 3

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Oh43 rep 3


P39 rep 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: P39 rep 2


Tx303 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Tx303 rep 1


Tzi8 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: Tzi8 rep 1


W22 rep 1

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: W22 rep 1


text: Biodata Mining & Discovery Section, Office of Science & Technology, NIAMS

text: live

text: Generic

text: embryonic day 16.5

characteristic: age

text: wild type

characteristic: genotype

text: Mus musculus

text: E16.5 skin

text: skin

characteristic: tissue

text: 16.5 WT1


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: embryonic day 16.5

text: wild type

text: Mus musculus

text: E16.5 skin

text: skin

text: 16.5 WT2


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: embryonic day 16.5

text: Mus musculus

text: E16.5 skin

text: skin

text: 16.5 CypKO1


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: embryonic day 16.5

text: Mus musculus

text: E16.5 skin

text: skin

text: 16.5 CypKO2


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: embryonic day 18.5

text: Mus musculus

text: E18.5 dermis

text: Dermis

text: 18.5 EncKO7Der


text: live

text: Generic

characteristic: SRA accession

text: embryonic day 18.5

text: Mus musculus

text: E18.5 dermis

text: Dermis

text: 18.5 Ctrl1Der


text: live

text: Generic

text: embryonic day 18.5

text: Mus musculus

characteristic: organism

text: E18.5 epidermis

text: Epidermis

text: 18.5 Ctrl6Epi


text: live

text: Generic

text: embryonic day 18.5

text: Mus musculus

text: E18.5 epidermis

text: Epidermis

text: 18.5 EncKO9Epi

characteristic: title


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

characteristic: description

text: unclassified bacterial viruses


text: DOE Joint Genome Institute

text: live

text: Generic

text: Brachypodium distachyon Mur1

text: Brachypodium distachyon

characteristic: sample number

text: Sample from Brachypodium distachyon


name: Macrosiphum euphorbiae salivary gland library

text: University of California, Riverside

text: live

text: Generic

text: Dissected salivary glands from adult Macrosiphum euphorbiae

text: Macrosiphum euphorbiae

text: In planta expression or delivery of potato aphid Macrosiphum euphorbiae effectors Me10 and Me23 enhances aphid fecundity


text: The Wistar Institute

text: live

text: Generic

text: ChIP sample were sequenced by Illumina Genome Analyzer II

text: Schizosaccharomyces pombe

text: ChIP-seq sample of Pku70-Myc


text: The Wistar Institute

text: live

text: Generic

text: Schizosaccharomyces pombe

text: ChIP-seq sample of Pku80-Myc


Pku-control

text: The Wistar Institute

text: live

text: Generic

text: Schizosaccharomyces pombe

text: ChIP-seq control for Pku


text: The Wistar Institute

text: live

text: Generic

text: Schizosaccharomyces pombe

text: ChIP-seq sample of Cut14-Pk


text: The Wistar Institute

text: live

text: Generic

text: Schizosaccharomyces pombe

text: ChIP-seq control for Cut14-Pk


text: Schaefer Lab, Cell and Developmental Biology, Medical University Vienna, Center for Anatomy & Cell Biology

text: live

text: Generic

text: adult

characteristic: developmental stage

text: Drosophila melanogaster

text: pooled male and female

characteristic: sex

text: whole tissues; Dnmt2 mutants

text: Dnmt2-99 mutant (Schaefer et al., 2010)

characteristic: strain

text: whole body

text: endogenous HMW RNA from Dnmt2 mutants, 2-8 days after a single heat shock, female and male, whole body


Triarrhena lutarioriparia

text: College of life sciences, Wuhan university

text: live

text: Generic

text: Miscanthus lutarioriparius

text: Miscanthus sacchariflorus ssp. lutarioriparius


Brassica rapa ssp. chinensis Wu

text: Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences

text: live

text: Generic

text: One of the subspecies of B.rapa non-heading Chinese cabbage

text: Brassica rapa subsp. chinensis


text: The Institute of Medicinal Plant Development

text: live

text: Generic

text: Panax ginseng

text: Panax ginseng


text: Research Institute of Physico-Chemical Medicine

text: live

text: Generic

text: mRNA extracted from Hep G2 cell line culture

text: Homo sapiens

text: HepG2 cell line transcriptome


RIL population

text: live

text: Generic

text: Brassica rapa

text: RIL population from cross between heading and non-heading Chinese cabbage


LSM

text: Centre National de la Recherche Scientifique - Information Genomique et Structurale

text: live

text: Generic

text: see environmental data on https://sites.google.com/site/metatranscriptomerochenoire/

text: unidentified

text: soil polyA RNA reads from alpine soil in a late snowmelt site


ESM

text: live

text: Generic

text: unidentified

text: soil polyA RNA reads from alpine soil in an early snowmelt site


Soil bacterial along CRCOP

text: CAREERI

text: live

text: Generic

text: The samples were taken from four different permafrost soils with different distributions along the China-Russia Crude Oil Pipeline. Samples were collected in the winter of 2009, when the pipeline trench was open for construction. These four sites are all permafrost-affected wetlands, but differ in the distribution and thermal stability of permafrost. Samples were generally taken in three different horizons, i.e., the upper and bottom of the active layer, and the permafrost table as well. Sample names Location Horizons Depth(cm) Date when taken 1300 Walagan upper active layer 20-30 11/15/2009 1500 bottom of active layer 70-80 11/15/2009 1600 permafrost table 150-160 11/15/2009 2300 Walagan North upper active layer 20-30 11/16/2009 2500 bottom of active layer 70-80 11/16/2009 2600 permafrost table 130-140 11/16/2009 3300 Tayuan upper active layer 30-40 11/17/2009 3500 bottom of active layer 80-90 11/17/2009 3600 permafrost table 120-130 11/17/2009 4300 Jagedaqi upper active layer 30-40 11/17/2009 4500 bottom of active layer 70-80 11/17/2009 4600 permafrost table 140-150 11/17/2009

text: soil metagenome

text: Pyrosequencing analysis on the bacteria within the permafrost soil along CRCOP


text: Korea Advanced Institute of Science and Technology

text: live

text: Generic

text: ade6-M210 leu1-32 ura4-D18

characteristic: genotype

text: Schizosaccharomyces pombe


characteristic: External Id

text: live

text: Generic

text: ade6-M216 leu1-32 ura4-D18

text: Schizosaccharomyces pombe


text: Duke University

characteristic: INSDC center name

text: live

text: Generic

text: Arabidopsis thaliana

text: Whole root sorted sample 1, amplified


text: Duke University

characteristic: INSDC first public

text: live

text: Generic

text: Arabidopsis thaliana

text: Whole root sorted sample 2, amplified


text: Miska, Wellcome Trust/Cancer Research UK Gurdon Institute, The Henry We, University of Cambridge

characteristic: INSDC last update

text: live

text: Generic

text: young adult

characteristic: generation

characteristic: genotype/variation

text: Caenorhabditis elegans

text: C.elegans whole animal, young adult

characteristic: strain/line

text: whole animal

characteristic: tissue

text: RSD-2 F0


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: young adult

text: Caenorhabditis elegans

text: C.elegans whole animal, young adult

text: whole animal

text: RSD-2 F2


text: live

text: Generic

text: young adult

characteristic: developmental stage

text: Caenorhabditis elegans

characteristic: organism

text: C.elegans whole animal, young adult

text: whole animal

text: RSD-2 F10

characteristic: title


text: live

text: Generic

text: young adult

text: Caenorhabditis elegans

text: C.elegans whole animal, young adult

text: whole animal

text: RSD-6 F0


text: live

text: Generic

text: young adult

text: Caenorhabditis elegans

text: C.elegans whole animal, young adult

text: whole animal

text: RSD-6 F2


text: live

text: Generic

text: young adult

text: Caenorhabditis elegans

text: C.elegans whole animal, young adult

text: whole animal

text: RSD-6 F8


text: live

text: Generic

text: young adult

text: wild type

text: Caenorhabditis elegans

text: C.elegans whole animal, young adult

text: whole animal

text: N2 F0


text: live

text: Generic

text: young adult

text: wild type

text: Caenorhabditis elegans

text: C.elegans whole animal, young adult

text: whole animal

text: N2 F2


text: live

text: Generic

text: young adult

text: wild type

text: Caenorhabditis elegans

text: C.elegans whole animal, young adult

text: whole animal

text: N2 F8


text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: Whole root sorted sample 3, amplified


text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: Whole root, unsorted sample 1, unamplified


text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: whole root, unsorted sample 2, amplified.


text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: whole root, unsorted sample 3, amplified


text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: endodermis sample 1, sorted and amplified


text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: endodermis sample 2, sorted and amplified


text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: endodermis sample 3, sorted and amplified


text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: cortex sample 1, sorted and amplified


text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: cortex sample 2, sorted and amplified


text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: cortex sample 3, sorted and amplified


Rice inoculation at the seedling stage

text: Mississippi State University

text: live

text: Generic

text: Transcriptomic study of rice expression upon inoculation with B. glumae at the seedling stage

characteristic: description

text: Oryza sativa

text: Rice inoculation with B. glumae at the seedling stage


Rice inoculation at the panicle stage

characteristic: External Id

text: Mississippi State University

text: live

text: Generic

text: Transcriptomic study of rice at the panicle stage

text: Oryza sativa

text: Transcriptomic profile of rice at the panicle stage


text: IMP

characteristic: INSDC center name

text: live

text: Generic

text: V5 (Sigma)

characteristic: chip antibody

text: Drosophila melanogaster

text: Clk

characteristic: strain


text: IMP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Drosophila melanogaster

text: Clk


text: IMP

text: live

text: Generic

text: V5 (Sigma)

text: Drosophila melanogaster

text: cyc


text: IMP

text: live

text: Generic

text: Drosophila melanogaster

text: cyc


text: IMP

text: live

text: Generic

text: V5 (Sigma)

text: Drosophila melanogaster

text: w-


text: IMP

text: live

text: Generic

text: Drosophila melanogaster

text: w-


ACT-3 DNA

text: University of Toronto

text: live

text: Generic

text: Dehalobacter sp. CF

text: CF

text: The genomic DNA sample from the ACT-3 mixed culture


CF50 DNA

text: University of Toronto

text: live

text: Generic

text: Dehalobacter sp. MS

text: MS

text: The genomic DNA from the CF50 mixed culture


text: National Center of Excellence in Molecular Biology

text: live

text: Generic

text: Plants were subjected to moisture stress by withholding water. ESTs were obtained through differential display (Liang et. al) which appeared under water stress responsive conditions. Identified ESTs were TA cloned in PCR 2.1 vector and sequenced.

text: thirty day-old plants

characteristic: dev-stage

text: root

characteristic: organ

text: Hibiscus sabdariffa var. sabdariffa

text: hermaphrodite

characteristic: sex

text: Differential display of water-stressed roselle genotype, root

text: plasmid

characteristic: vector


text: Constellation Pharmaceuticals

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: HT

characteristic: cell line

text: Cell Signaling

characteristic: chip antibody manufacturer

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: HT H3K27me3


text: Constellation Pharmaceuticals

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Cell Signaling

text: Homo sapiens

characteristic: organism

text: Diffuse large B cell lymphoma

text: SUDHL6 H3K27me3

characteristic: title


characteristic: External Id

text: Constellation Pharmaceuticals

characteristic: INSDC center name

text: live

text: Generic

text: HT

characteristic: chip antibody

text: Cell Signaling

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: HT EZH2


text: Constellation Pharmaceuticals

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Cell Signaling

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 EZH2


text: Constellation Pharmaceuticals

text: live

text: Generic

text: HT

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: HT Input


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 Input


text: Constellation Pharmaceuticals

text: live

text: Generic

text: HT

text: Cell Signaling

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: HT H3K4me3


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Cell Signaling

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 H3K4me3


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Cell Signaling

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 DMSO H3K27me3

text: DMSO

characteristic: treatment


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Cell Signaling

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 iEZH H3K27me3

text: iEZH


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 DMSO Input

text: DMSO


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 iEZH Input

text: iEZH


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Cell Signaling

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 DMSO EZH2

text: DMSO


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Cell Signaling

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 iEZH EZH2

text: iEZH


text: Constellation Pharmaceuticals

text: live

text: Generic

text: SysBio

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 DMSO H3K36me1

text: DMSO


text: Constellation Pharmaceuticals

text: live

text: Generic

text: SysBio

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 iEZH H3K36me1

text: iEZH


text: Constellation Pharmaceuticals

text: live

text: Generic

text: HT

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: HT DMSO D4 R1

text: DMSO


text: Constellation Pharmaceuticals

text: live

text: Generic

text: HT

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: HT iEZH D4 R1

text: iEZH


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 DMSO D4 R1

text: DMSO


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 iEZH D4 R1

text: iEZH


text: Constellation Pharmaceuticals

text: live

text: Generic

text: HT

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: HT DMSO D4 R2

text: DMSO


text: Constellation Pharmaceuticals

text: live

text: Generic

text: HT

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: HT iEZH D4 R2

text: iEZH


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 DMSO D4 R2

text: DMSO


text: Constellation Pharmaceuticals

text: live

text: Generic

text: Homo sapiens

text: Diffuse large B cell lymphoma

text: SUDHL6 iEZH D4 R2

text: iEZH


text: Institute of Zoology, Chinese Academy of Sciences

text: live

text: Generic

text: 16 weeks

characteristic: maternal age

text: Mus musculus

text: oocytes, maternal control

text: ICR

characteristic: strain

text: oocyte at MII stage

characteristic: tissue

text: Maternal control oocytes, RNA-Seq

text: mother fed standard diet


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 16 weeks

text: Mus musculus

text: oocytes, maternal slimming

text: ICR

text: oocyte at MII stage

text: Maternal slimming oocytes, RNA-Seq

text: enriched environment-induced maternal slimming


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

characteristic: biosamplemodel

characteristic: collaborator sample id

text: broadinstitute.org:bsp.prod.sample:28KT5

characteristic: lsid

text: Fonticula alba

characteristic: sample barcode

text: Genomic DNA

characteristic: sample type

text: Other

characteristic: sex

text: ATCC 38817

text: Fonticula alba ATCC 38817 Genomic DNA sample 127781.0


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

text: broadinstitute.org:bsp.prod.sample:28KT6

text: Fonticula alba

characteristic: organism

text: Genomic DNA

text: Other

text: ATCC 38817

text: Fonticula alba ATCC 38817 Genomic DNA sample 127782.0

characteristic: title


text: Shanghai Jiao Tong University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: The transgenic rice T1c-19 was developed by introducing the Cry1C gene and phosphinothricin acetyltransferase (Bar) gene into the Oryza sativa indica cultivar Minghui 63. T1c-19 exhibit high resistance to leaffolders (Cnaphalocrocis medinalis) and yellow stemborer (Tryporyza incertulas). The transgenic rice TT51-1 was co-transformed with two plasmids (pFHBT1 and pGL2RC7) into Minghui 63 by particle bombardment, denoting the high resistance against yellow stem borers and leaf-folders. Both these two transgenic rice events were developed by Huazhong Agricultural University, China. Homogenous seeds of transgenic rice T1c-19, TT51-1, and Non-GM rice Minghui 63 were planted in Wuhan (Hubei province, China) and harvested in September, 2010.

characteristic: description

text: Oryza sativa

text: Whole genome re-sequencing can improve basis for transgene safety assessments


text: Northeast Agricultural University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 4-week-old seedlings

characteristic: developmental stage

characteristic: ecotype

text: wild-type

characteristic: genotype

text: 20 seedlings

characteristic: number of plants

text: Arabidopsis thaliana

text: Aerial part


text: Northeast Agricultural University

text: live

text: Generic

characteristic: NCBI submission model

text: 4-week-old seedlings

text: SsCBF1-overexpressing line

text: 20 seedlings

text: Arabidopsis thaliana

text: Aerial part


Escherichia coli 11-02030

text: Broad Institute

text: live

text: Generic

characteristic: collection date

text: Germany: Leverkusen

text: Escherichia coli O104:H4 str. 11-02030

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: Generic sample from Escherichia coli O104:H4 str. 11-02030


Escherichia coli 11-02033-1

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: Germany: Bremerhaven

text: Homo sapiens

text: Generic sample from Escherichia coli O104:H4 str. 11-02033-1


Escherichia coli 11-02092

text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Germany: Freiburg i.Br.

text: Escherichia coli O104:H4 str. 11-02092

characteristic: organism

text: Homo sapiens

text: Generic sample from Escherichia coli O104:H4 str. 11-02092

characteristic: title


Escherichia coli 11-02093

text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Germany: Rostock

text: Escherichia coli O104:H4 str. 11-02093

text: Homo sapiens

text: Generic sample from Escherichia coli O104:H4 str. 11-02093


Escherichia coli 11-02281

text: Broad Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Germany: Waldenburg

text: Escherichia coli O104:H4 str. 11-02281

text: Homo sapiens

text: Generic sample from Escherichia coli O104:H4 str. 11-02281


Escherichia coli 11-02318

text: Broad Institute

text: live

text: Generic

text: Germany: Lubeck

text: Escherichia coli O104:H4 str. 11-02318

text: Homo sapiens

text: Generic sample from Escherichia coli O104:H4 str. 11-02318


Escherichia coli 11-02913

text: Broad Institute

text: live

text: Generic

text: Germany: Wernigerode

text: Escherichia coli O104:H4 str. 11-02913

text: Homo sapiens

text: Generic sample from Escherichia coli O104:H4 str. 11-02913


Escherichia coli 11-03439

text: Broad Institute

text: live

text: Generic

text: Germany: Munchen

text: Escherichia coli O104:H4 str. 11-03439

text: Homo sapiens

text: Generic sample from Escherichia coli O104:H4 str. 11-03439


Escherichia coli 11-04080

text: Broad Institute

text: live

text: Generic

text: Germany: Berlin

text: Escherichia coli O104:H4 str. 11-04080

text: Homo sapiens

text: Generic sample from Escherichia coli O104:H4 str. 11-04080


Escherichia coli 11-03943

text: Broad Institute

text: live

text: Generic

text: Germany: Lubeck

text: Escherichia coli O104:H4 str. 11-03943

text: Homo sapiens

text: Generic sample from Escherichia coli O104:H4 str. 11-03943


text: Norwegian University of Life Sciences

text: live

text: Generic

text: Festuca pratensis ‘B14/16’, control sample: Three clonal plants were grown at 20/12*C day/night, 16/8h light/darkness with light intensity 240 μmolm-2s-1 for two weeks. Total RNA (100mg) was isolated from crown, stem and leaf tissues using the RNeasy Mini kit (Qiagen, Hilden, Germany). cDNA was synthesized using MINT-Universal cDNA synthesis kit (Evrogen, protocol-II) and sequenced using a single-end sequencing protocol on the Roche 454 Titanium sequencing machine.

characteristic: description

text: Festuca pratensis

text: Festuca pratensis 'B14/16', control sample


text: Norwegian University of Life Sciences

text: live

text: Generic

text: Festuca pratensis ‘B14/16’, cold acclimated sample Three clonal plants were grown at 20/12*C day/night, 16/8h light/darkness with light intensity 240 μmolm-2s-1 for two weeks and then subjected to cold acclimation at 1*C. Total RNA (100mg) was isolated from crown, stem and leaf tissues at 1, 2 and 3 weeks after initiation of cold acclimation using the RNeasy Mini kit (Qiagen, Hilden, Germany). cDNA was synthesized using MINT-Universal cDNA synthesis kit (Evrogen, protocol-II) and sequenced using a single-end sequencing protocol on the Roche 454 Titanium sequencing machine.

text: Festuca pratensis


text: Norwegian University of Life Sciences

text: live

text: Generic

text: Festuca pratensis ‘HF2/7’, control sample Three clonal plants were grown at 20/12*C day/night, 16/8h light/darkness with light intensity 240 μmolm-2s-1 for two weeks. Total RNA (100mg) was isolated from crown, stem and leaf tissues using the RNeasy Mini kit (Qiagen, Hilden, Germany). cDNA was synthesized using MINT-Universal cDNA synthesis kit (Evrogen, protocol-II) and sequenced using a single-end sequencing protocol on the Roche 454 Titanium sequencing machine.

text: Festuca pratensis


text: Norwegian University of Life Sciences

text: live

text: Generic

text: Festuca pratensis ‘HF2/7’, cold acclimated sample Three clonal plants were grown at 20/12*C day/night, 16/8h light/darkness with light intensity 240 µmolm-2s-1 for two weeks and then subjected to cold acclimation at 1*C. Total RNA (100mg) was isolated and pooled from crown, stem and leaf tissues at 1, 2 and 3 weeks after initiation of cold acclimation using the RNeasy Mini kit (Qiagen, Hilden, Germany). cDNA was synthesized using MINT-Universal cDNA synthesis kit (Evrogen, protocol-II) and sequenced using a single-end sequencing protocol on the Roche 454 Titanium sequencing machine.

text: Festuca pratensis


T. nigroviridis embryo 2 hpf

text: University of Bergen

text: live

text: Generic

text: Tetraodon nigroviridis - embryo 2 hours past fertilization

text: Tetraodon nigroviridis

text: T. nigroviridis embryo 2 hpf


T. nigroviridis embryo 46 hpf

text: University of Bergen

text: live

text: Generic

text: Tetraodon nigroviridis - embryo 46 hours past fertilization

text: Tetraodon nigroviridis

text: T. nigroviridis embryo 46 hpf


Haloferax volcanii DS2 nucleosome

text: University of Toronto

text: live

text: Generic

text: Sample preparation. Haloferax volcanii DS2 cells (obtained from the ATCC) were grown to mid-log phase at 42*C in ATCC 974 Halobacterium medium supplemented with 2M NaCl. Cells were fixed with 2% formaldehyde for 30 min then quenched with 125mM of glycine for 5 min. Cells were pelleted and snap frozen prior to MNase digestion and DNA extraction. Frozen cells were processed according to a modified protocol from Rizzo et al.(Rizzo et al., 2011, Tsui et al., 2012). Samples were digested with increasing concentrations of MNase and a no MNase control. After digestion, fragments 50-60bp in length were size-selected using an Agilent Bioanalyzer High Sensitivity chip (Agilent, part# 5067-4626) and further processed for Illumina deep sequencing. This size-selection was critical, as the formaldehyde crosslinking causes both histones as well as other DNA-binding proteins to crosslink with bound DNA. Nucleosomal and genomic libraries were pooled equally according to qPCR quantitation, and sequenced using v3 chemistry on one single-read HiSeq2000 lane (50x8). Samples were demultiplexed using an 8bp index read at the end of read 1.

text: Haloferax volcanii DS2

text: naked DNA control


text: Internal Med III, University Hospital Regensburg

text: live

text: Generic

text: CD14+CD16- classical blood monocytes

characteristic: cell type

characteristic: chip antibody

text: abcam

characteristic: chip antibody manufacturer

text: A

characteristic: donor

text: Homo sapiens

text: CD14+CD16- classical blood monocytes

text: H3K4me1 CD14+CD16- donor A


text: live

text: Generic

characteristic: NCBI submission model

text: CD14+CD16- classical blood monocytes

text: abcam

text: D

text: Homo sapiens

text: CD14+CD16- classical blood monocytes

text: H3K4me1 CD14+CD16- donor D


text: live

text: Generic

text: CD14+CD16- classical blood monocytes

text: abcam

text: A

text: Homo sapiens

text: CD14+CD16- classical blood monocytes

text: H3K27ac CD14+CD16- donor A


text: live

text: Generic

text: CD14+CD16- classical blood monocytes

text: abcam

text: D

text: Homo sapiens

text: CD14+CD16- classical blood monocytes

text: H3K27ac CD14+CD16- donor D


text: live

text: Generic

text: CD14dimCD16+ non-classical blood monocytes

text: abcam

text: A

text: Homo sapiens

text: H3K4me1 CD14dimCD16+ donor A


text: live

text: Generic

text: abcam

text: D

text: Homo sapiens

text: H3K4me1 CD14dimCD16+ donor D


text: live

text: Generic

text: abcam

text: A

text: Homo sapiens

text: H3K27ac CD14dimCD16+ donor A


text: live

text: Generic

text: abcam

text: D

text: Homo sapiens

text: H3K27ac CD14dimCD16+ donor D


text: live

text: Generic

text: no antibody

text: A

text: Homo sapiens

text: Input donor A


text: live

text: Generic

text: no antibody

text: D

text: Homo sapiens

text: Input donor D


text: Martienssen, Delbruck Bldg., Cold Spring Harbor Laboratory

text: live

text: Generic

text: FACS-purified vegetative nuclei

characteristic: ecotype

text: Arabidopsis thaliana

text: Purified vegetative nuclei

text: developing pollen

characteristic: tissue

text: Arabidopsis thaliana Vegetative Nucleus


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: FACS-purified sperm cells

text: Arabidopsis thaliana

text: Purified sperm cells

text: developing pollen

text: Arabidopsis thaliana Sperm Cell


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: FACS-purified microspores

text: Arabidopsis thaliana

text: Purified microspores

text: developing pollen

text: Arabidopsis thaliana Microspore


Early instar

text: Max Planck Institute for Chemical Ecology

text: live

text: Generic

text: Spodoptera littoralis

characteristic: organism

text: early instar larval gut microbiota

characteristic: title


text: Functional Genomics, Functional Genomics, PICB

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Mouse embryonic fibroblasts

text: anti-Flag (Sigma)

text: Mus musculus

text: Mouse embryonic fibroblasts

text: PAR-CLIP

characteristic: technology


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Mouse embryonic fibroblasts

text: Mus musculus

text: Mouse embryonic fibroblasts

text: Transcriptome RNA-seq

text: mock transfected at 37C

characteristic: treatment


text: live

text: Generic

text: Mouse embryonic fibroblasts

characteristic: cell type

text: Mus musculus

text: Mouse embryonic fibroblasts

text: Transcriptome RNA-seq

text: mock transfected at 32C


text: live

text: Generic

text: Mouse embryonic fibroblasts

text: Mus musculus

text: Mouse embryonic fibroblasts

text: Transcriptome RNA-seq

text: siCirbp transfected at 37C


text: live

text: Generic

text: Mouse embryonic fibroblasts

text: Mus musculus

text: Mouse embryonic fibroblasts

text: Transcriptome RNA-seq

text: siRbm3 transfected at 37C


text: Raetsch Lab, Computational Biology, Memorial Sloan Kettering Cancer Center

text: live

text: Generic

text: Caenorhabditis elegans

text: 155 bp library

characteristic: sample type

text: mixed developmental stages

characteristic: strain

text: whole organism

text: 155 bp library


text: live

text: Generic

characteristic: NCBI submission model

text: Caenorhabditis elegans

text: 320 bp library

text: mixed developmental stages

text: whole organism

text: 320 bp library


text: live

text: Generic

text: Caenorhabditis elegans

text: 480 bp library

text: mixed developmental stages

text: whole organism

characteristic: tissue

text: 480 bp library


characteristic: External Id

text: live

text: Generic

text: Caenorhabditis elegans

text: 595 bp library

text: mixed developmental stages

text: whole organism

text: 595 bp library


text: UT southwestern medical center

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody catalog number

text: Abcam

characteristic: antibody vendor

text: differentiating oligodendrocytes

characteristic: chip antibody

text: 70 hours of in vitro differentiation

characteristic: differentiation stage

text: Rattus norvegicus

text: primary oligodendrocytes, Olig2 ChIP

text: Sprague-Dawley


text: UT southwestern medical center

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Abcam

text: differentiating oligodendrocytes

text: control IgG

text: 70 hours of in vitro differentiation

text: Rattus norvegicus

characteristic: organism

text: primary oligodendrocytes, control ChIP

text: Sprague-Dawley

text: Control ChIP-seq

characteristic: title


text: Biology, Woods Hole Oceanographic Institution

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 400 nM

characteristic: iron concentration

text: Thalassiosira pseudonana CCMP1335

text: 36 uM

characteristic: phosphorus concentration

text: Replete Culture

text: Replete Culture


text: live

text: Generic

characteristic: NCBI submission model

text: 400 nM

text: Thalassiosira pseudonana CCMP1335

text: 0.4 uM

text: Phosphorus-limited Culture

text: Phosphorus-limited Culture


characteristic: External Id

text: live

text: Generic

text: 40 nM

text: Thalassiosira pseudonana CCMP1335

text: 36 uM

text: Iron-limited Culture

text: Iron-limited Culture


characteristic: INSDC center name

text: live

text: Generic

text: 40 nM

text: Thalassiosira pseudonana CCMP1335

text: 0.4 uM

text: Co-limited Culture

text: Co-limited Culture


text: Chromous Seeds Pvt. Ltd.

text: live

text: Generic

text: RAPD was performed with total 9 muskmelon Indian varieties. Polymorphic bands were isolated from all the varieties and cloned in T/A vector to identify the sequence.

characteristic: description

characteristic: lab-host

text: Cucumis melo

text: Leaf

characteristic: tissue-type

text: RAPD derived polymorphic sequence containing gDNA library of muskmelon (Cucumis melo)

characteristic: variety

text: T/A Vector

characteristic: vector


text: USDA-ARS

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: Subtractive hybridization was performed with the PCR-Select bacterial genome subtraction Kit (Clontech), according to the manufacturer's protocol. Tester was genomic DNA isolated from AL09-71. Driver was genomic DNA isolated from AL09-71N+R.

text: Aeromonas hydrophila

characteristic: strain

text: Highly virulent 2009 Alabama isolate A. hydrophila (AL09-71) compared to vaccine strain AL09-71 N+R subtractive genomic library

text: pGEM T easy (promega)


text: Genome Research Foundation

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

characteristic: organism

characteristic: title


Drought tolerant Pseudomonas

text: Central Research Institute for Dryland Agriculture

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: A Pseudomonas strain isolated from Bari Brahmana, Jammu, Jammu and kashmir possessing drought tolerance and also phosphate solubilization ability

text: Pseudomonas

text: Whole genome sequence of salinity tolerant biocontrol strain of Pseudomonas P17


Late instar

text: live

text: Generic

characteristic: NCBI submission model

text: Spodoptera littoralis

text: late instar larval gut microbiota


characteristic: External Id

text: Ocular Genomics Institute, Ophthalmology, Massachusetts Eye and Ear Infirmary

text: live

text: Generic

text: normal

characteristic: disease status

text: Homo sapiens

text: retina

text: retina

characteristic: tissue


text: Microbiology, Radboud University Nijmegen

characteristic: INSDC center name

text: live

text: Generic

text: Methylacidiphilum fumariolicum SolV

text: Batch culture

text: SolV

text: Cells growing at μmax

text: growing at μmax

characteristic: treatment


text: live

text: Generic

text: Methylacidiphilum fumariolicum SolV

text: Chemostat culture

text: SolV

text: Cells growing under nitrogen fixing conditions

text: nitrogen fixing conditions


text: live

text: Generic

text: Methylacidiphilum fumariolicum SolV

text: Chemostat culture

text: SolV

text: Cells growing under oxygen limitation

text: oxygen limitation


text: ENCODE DCC

text: live

text: Generic

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Mitch Weiss lab

characteristic: biomaterial provider

characteristic: cell

text: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: Input

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Timecourse

characteristic: labexpid

text: Mus musculus

characteristic: replicate

text: Strain 129, has widely available embryonic stem cells

characteristic: strain description

text: PSU_ChipSeq_G1E-ER4_Input_diffProtD_7hr_Timecourse

text: 7 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: Mitch Weiss lab

text: mouse

text: M

text: Input

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Timecourse

text: Mus musculus

characteristic: organism

characteristic: strain

text: PSU_ChipSeq_G1E-ER4_Input_diffProtD_3hr_Timecourse

characteristic: title

characteristic: treatment

text: 3 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Embryonic day 0 (stem cell)

text: Input

text: Mitch Weiss lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: Input

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Timecourse

characteristic: labexpid

text: Mus musculus

characteristic: replicate

characteristic: strain description

text: PSU_ChipSeq_G1E-ER4_Input_diffProtD_30hr_Timecourse

text: 30 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: Mitch Weiss lab

text: mouse

text: M

text: Input

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Timecourse

text: Mus musculus

characteristic: organism

characteristic: strain

text: PSU_ChipSeq_G1E-ER4_Input_diffProtD_24hr_Timecourse

characteristic: title

characteristic: treatment

text: 24 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Embryonic day 0 (stem cell)

text: Input

text: Mitch Weiss lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: Input

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Timecourse

characteristic: labexpid

text: Mus musculus

characteristic: replicate

characteristic: strain description

text: PSU_ChipSeq_G1E-ER4_Input_diffProtD_14hr_Timecourse

text: 14 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: Mitch Weiss lab

text: mouse

text: M

text: Input

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Timecourse

text: Mus musculus

characteristic: organism

characteristic: strain

characteristic: title

text: No special treatment or protocol applies


text: ENCODE DCC

text: live

text: Generic

text: Embryonic day 0 (stem cell)

text: rat monoclonal antibody raised against mouse recombinant GATA1; recommended for detection of GATA1 of mouse, rat and human origin. Antibody Target: GATA1

characteristic: antibody antibodydescription

text: GATA1 is erythroid-specific and is responsible for the regulated transcription of erythroid genes.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Mitch Weiss lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: Input

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Timecourse

characteristic: labexpid

text: Mus musculus

characteristic: replicate

characteristic: strain description

text: PSU_ChipSeq_G1E-ER4_GATA1_(SC-265)_diffProtD_7hr_Timecourse

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Mitch Weiss lab

characteristic: biomaterial provider

text: mouse

text: M

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Timecourse

text: Mus musculus

characteristic: organism

characteristic: strain

text: PSU_ChipSeq_G1E-ER4_GATA1_(SC-265)_diffProtD_3hr_Timecourse

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Embryonic day 0 (stem cell)

text: Santa Cruz Biotech

text: Mitch Weiss lab

characteristic: cell

text: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: Input

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Timecourse

characteristic: labexpid

text: Mus musculus

characteristic: replicate

text: Strain 129, has widely available embryonic stem cells

characteristic: strain description

text: PSU_ChipSeq_G1E-ER4_GATA1_(SC-265)_diffProtD_14hr_Timecourse

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Mitch Weiss lab

characteristic: biomaterial provider

text: mouse

text: M

text: Input

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Timecourse

text: Mus musculus

characteristic: organism

characteristic: strain

text: PSU_ChipSeq_G1E-ER4_GATA1_(SC-265)_Timecourse

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Embryonic day 14.5

text: FLI1 (C-19) is an affinity purified rabbit polyclonal antibody raised against a peptide mapping at the C-terminus of FLI1 of mouse origin.

text: Fli1 (Friend leukemia virus integration 1) is a member of a family of genes identified on the basis of their homology to the v-Ets oncogene isolated from the E26 erythoblastosis virus.

text: Santa Cruz Biotech

text: Mitch Weiss lab

text: Megakaryo

characteristic: cell

text: Megakaryocyte

characteristic: cell description

text: mouse

characteristic: cell organism

text: B

characteristic: cell sex

text: Input

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

text: Megakaryo

text: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.

characteristic: strain description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

characteristic: antibody

text: goat polyclonal antibody; epitope mapping at the C-terminus of TAL1 of human origin, recommended for detection of TAL1 of mouse, rat and human origin. Antibody Target: TAL1

characteristic: antibody antibodydescription

text: TAL1 (also designated SCL) is a serine phosphoprotein and basic helix-loop-helix transcription factor known to regulate embryonic hematopoiesis.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Mitch Weiss lab

characteristic: biomaterial provider

text: Megakaryo

text: Megakaryocyte

text: mouse

text: B

text: Input

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

text: Megakaryo

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Embryonic day 0 (stem cell)

text: Santa Cruz Biotech

text: Mitch Weiss lab

characteristic: cell

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: Input

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Timecourse

characteristic: labexpid

text: Mus musculus

characteristic: replicate

characteristic: strain description

text: PSU_ChipSeq_G1E-ER4_GATA1_(SC-265)_diffProtD_30hr_Timecourse

characteristic: treatment

text: 30 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Mitch Weiss lab

characteristic: biomaterial provider

text: mouse

text: M

text: Input

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Timecourse

text: Mus musculus

characteristic: organism

characteristic: strain

text: PSU_ChipSeq_G1E-ER4_GATA1_(SC-265)_diffProtD_24hr_Timecourse

characteristic: title

text: 24 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Adult 5 weeks

text: Bodine lab

text: MEP

characteristic: cell

text: mouse megakaryocyte erythroid progenitor cells with lineages CD16/32 and CD34-

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: paired-end

characteristic: labexpid

text: Mus musculus

characteristic: readtype

text: Paired 99 nt directed reads

characteristic: readtype description

characteristic: replicate

text: MEP

text: A substrain of C57BL/6

characteristic: strain description

text: PSU_RnaSeq_MEP_paired-end (superseded by GSE90218)

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Weissman lab

characteristic: biomaterial provider

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: RnaSeq

text: Sequencing analysis of RNA expression

text: PSU-m

text: Hardison - Penn State University

text: single

text: Mus musculus

characteristic: organism

text: Single 45 nt reads

text: MEL

text: Unknown strain origin

text: PSU_RnaSeq_MEL_DMSO_2.0pct_single (superseded by GSE93476)

characteristic: title

characteristic: treatment

text: 5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Embryonic day 0 (stem cell)

text: Mitch Weiss lab

characteristic: cell

text: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: paired-end

characteristic: labexpid

text: Mus musculus

characteristic: readtype

text: Paired 99 nt directed reads

characteristic: readtype description

characteristic: strain

text: Strain 129, has widely available embryonic stem cells

text: PSU_RnaSeq_G1E-ER4_diffProtD_14hr_paired-end (superseded by GSE90211)

text: 14 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Weissman lab

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

text: Leukemia (K562 analog)

text: mouse

text: M

text: RnaSeq

text: Sequencing analysis of RNA expression

text: PSU-m

text: Hardison - Penn State University

text: single

text: MEL

characteristic: line

text: Mus musculus

characteristic: organism

text: Single 45 nt reads

characteristic: replicate

text: MEL

text: Unknown strain origin

characteristic: strain description

text: PSU_RnaSeq_MEL_single (superseded by GSE93475)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Mitch Weiss lab

characteristic: cell

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: single

characteristic: labexpid

text: Mus musculus

characteristic: readtype

text: Single 36 nt reads

characteristic: readtype description

text: PSU_RnaSeq_G1E-ER4_diffProtD_24hr_single (superseded by GSE93477)

characteristic: title

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

text: Mitch Weiss lab

characteristic: biomaterial provider

text: Gata1- erythroid progenitor

text: mouse

text: M

text: RnaSeq

text: Sequencing analysis of RNA expression

text: PSU-m

text: Hardison - Penn State University

text: single

text: Mus musculus

characteristic: organism

text: Single 36 nt reads

characteristic: replicate

characteristic: strain

characteristic: strain description

text: PSU_RnaSeq_G1E_single (superseded by GSE90219)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Mitch Weiss lab

characteristic: cell

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: paired-end

characteristic: labexpid

text: Mus musculus

characteristic: readtype

text: Paired 99 nt directed reads

characteristic: readtype description

text: PSU_RnaSeq_G1E-ER4_diffProtD_7hr_paired-end (superseded by GSE90212)

text: 7 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

text: Mitch Weiss lab

characteristic: biomaterial provider

text: mouse

text: M

text: RnaSeq

text: Sequencing analysis of RNA expression

text: PSU-m

text: Hardison - Penn State University

text: paired-end

text: Mus musculus

characteristic: organism

text: Paired 99 nt directed reads

characteristic: replicate

characteristic: strain

text: PSU_RnaSeq_G1E-ER4_paired-end (superseded by GSE90213)

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Embryonic day 14.5

characteristic: age description

text: Mitch Weiss lab

text: Erythrobl

characteristic: cell

text: Erythroblast, ter119+ cells from liver

characteristic: cell description

text: mouse

characteristic: cell organism

text: B

characteristic: cell sex

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: paired-end

text: Mus musculus

text: Paired 99 nt directed reads

text: Erythrobl

text: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.

characteristic: strain description

text: PSU_RnaSeq_Erythrobl_paired-end (superseded by GSE90207)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult between 8-10 weeks #PROVISIONAL

text: Paulson Lab

characteristic: biomaterial provider

text: FVprogenitor

text: Friend virus infected murine CD34-,CD133-,Kit+,Sca1+ progenitor cells. Strains which can be used to generate the cells must carry the Fv2 sensitive allele (Fv2s). #PROVISIONAL

text: mouse

text: B

text: RnaSeq

text: Sequencing analysis of RNA expression

text: PSU-m

text: Hardison - Penn State University

text: paired-end

characteristic: labexpid

text: Mus musculus

characteristic: organism

characteristic: readtype

text: Paired 99 nt directed reads

characteristic: readtype description

text: FVprogenitor

text: BALB/cJ

text: A common inbred strain of laboratory mouse. #PROVISIONAL

text: PSU_RnaSeq_FVprogenitor_paired-end (superseded by GSE90209)


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Adult between 8-10 weeks #PROVISIONAL

characteristic: age description

text: Paulson Lab

text: FVLstem

characteristic: cell

text: Friend virus infected murine CD34+,CD133+,Kit+,Sca1+ Leukemia stem cells. Strains which can be used to generate the cells must carry the Fv2 sensitive allele (Fv2s). #PROVISIONAL

characteristic: cell description

text: mouse

characteristic: cell organism

text: B

characteristic: cell sex

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

text: paired-end

text: Mus musculus

text: Paired 99 nt directed reads

characteristic: replicate

text: FVLstem

text: BALB/cJ

characteristic: strain

text: PSU_RnaSeq_FVLstem_paired-end (superseded by GSE90208)

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

text: Mitch Weiss lab

characteristic: biomaterial provider

text: Gata1- erythroid progenitor

text: mouse

text: M

text: RnaSeq

text: Sequencing analysis of RNA expression

text: PSU-m

text: Hardison - Penn State University

characteristic: lab description

text: paired-end

characteristic: labexpid

text: Mus musculus

text: Paired 99 nt directed reads

text: Strain 129, has widely available embryonic stem cells

characteristic: strain description

text: PSU_RnaSeq_G1E_paired-end (superseded by GSE90210)

characteristic: treatment description