text: National Research Centre on Plant Biotechnology

text: live

text: Generic

text: P. cineraria seedlings were grown under in vitro condition. One month old seedlings were subjected to heat stress of 48 C for 15 min to 48 hrs. Total RNA was isolated from seedlings of different heat stress treatments and cDNA was prepared from the pooled RNA. EST library was developed using the prepared cDNA in pGEMT easy vector and transformed into E. coli.

text: Seedlings of 1 month old

characteristic: dev-stage

text: E. coli strain DH5a

characteristic: lab-host

text: Prosopis cineraria

text: EcoRI

text: EcoRI

text: Complete seedlings without cotyledons

characteristic: tissue-type

text: High temperature responsive ESTs from Prosopis cineraria (L) Druce seedlings

text: Plasmid

text: pGEMT-easy

characteristic: vector


status: PUBLIC

characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Manihot esculenta Albert

characteristic: description

text: Manihot esculenta subsp. esculenta

characteristic: organism

tag: attribute

characteristic: sample number

text: Albert

characteristic: strain

text: Generic sample from Manihot esculenta subsp. esculenta

characteristic: title


text: DOE Joint Genome Institute

text: live

text: Generic

text: Mimulus glaucescens PUL5

text: Erythranthe glaucescens

text: Generic sample from Mimulus glaucescens


text: DOE Joint Genome Institute

text: live

text: Generic

text: Mimulus platycalyx CVP9

text: Erythranthe microphylla

text: Generic sample from Mimulus platycalyx


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Mimulus cupriphilis MCN6c

text: Erythranthe pardalis

text: Mimulus cupriphilis MCN6c


text: DOE Joint Genome Institute

text: live

text: Generic

text: Mimulus micranthus EBR10

text: Erythranthe arvensis

text: Generic sample from Mimulus guttatus subsp. micranthus


text: DOE Joint Genome Institute

text: live

text: Generic

text: Mimulus tillingii STV115

text: Erythranthe tilingii

text: Generic sample from Mimulus tilingii


text: DOE Joint Genome Institute

text: live

text: Generic

text: Mimulus guttatus SLP19

text: Erythranthe guttata

text: Generic sample from Mimulus guttatus


text: DOE Joint Genome Institute

text: live

text: Generic

text: Aspergillus versicolor

text: Aspergillus versicolor

text: Generic sample from Aspergillus versicolor


text: DOE Joint Genome Institute

text: live

text: Generic

text: Mimulus guttatus AHQT1.2

text: Erythranthe guttata

text: Generic sample from Mimulus guttatus


text: DOE Joint Genome Institute

text: live

text: Generic

text: Aspergillus sydowii

text: Aspergillus sydowii

text: Generic sample from Aspergillus sydowii


text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum bicolor Grassl

text: Sorghum bicolor

text: Grassl

text: Generic sample from Sorghum bicolor


text: DOE Joint Genome Institute

text: live

text: Generic

text: Miscanthus sinensis EF148 var Malepartus

text: Miscanthus sinensis

text: EF148 var Malepartus

text: Generic sample from Miscanthus sinensis


text: DOE Joint Genome Institute

text: live

text: Generic

text: Miscanthus sacchariflorus EF03(01-03) var Hercules

text: Miscanthus sacchariflorus

text: EF03(01-03) var Hercules

text: Generic sample from Miscanthus sacchariflorus


text: University of California, Riverside

text: live

text: Generic

text: Hordeum vulgare subsp. vulgare

text: Morex Barley BAC pools Hv7


text: Broad Institute

text: live

characteristic: Isolate, name or label

text: Generic

text: Generic

characteristic: biosamplemodel

text: uncultured bacterium

characteristic: sample name

text: Homo sapiens

characteristic: specific host

text: Generic sample from uncultured bacterium


contral

characteristic: External Id

text: Beijing Institute of Genomics Chinese Acad of Sci - Key Lab

characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: tranfection contral


Overexpression of GmDof4 from Soybean

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: re we transferred GmDof4 from soybean (Glycine max), a transcription factor affecting content of lipid in Arabidopsis, into C. ellipsoidea and found that the expression of GmDof4 significantly enhanced the lipid content by maximum 57.21%, shifted the content of different fatty acids, but did not affect the growth of the host cells.

text: Pseudochlorella pringsheimii

text: Overexpression of GmDof4 from Soybean


Contral

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Pseudochlorella pringsheimii

text: control (pCK transgenic line CK-1)


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: HEB (A-20) Rabbit polyclonal IgG, 200 ?g/ml. Epitope mapping within the C-terminus of HEB of human origin. Antibody Target: TCF12

characteristic: antibody description

text: The protein encoded by this gene is a member of the basic helix-loop-helix (bHLH) E-protein family that recognizes the consensus binding site (E-box) CANNTG. This encoded protein is expressed in many tissues, among them skeletal muscle, thymus, B- and T-cells, and may participate in regulating lineage-specific gene expression through the formation of heterodimers with other bHLH E-proteins. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

text: Myoblast cell line derived from thigh muscle of C3H mice after crush injury

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: This data represents a control being compared to experiments using read length of 50 bp

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

text: Wold - Califonia Institute of Technology

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_TCF12_Control_50bp_EqS_2.0pct_60hr

characteristic: treatment

text: 60 h with 2.0% Equine Serum and Insulin (Wold)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: CEBPB

characteristic: antibody

text: Rabbit polyclonal IgG. Antibody Target: CEBPB

characteristic: antibody description

text: epitope mapping at the C-terminus of C/EBP-beta of rat origin

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myoblast

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_CEBPB_Control_50bp

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: immortalized

text: Immortal cells

text: mouse monoclonal antibody; epitope mapping within amino acids 138-158 of myogenin of rat origin. Antibody Target: Myogenin

text: Myogenin is a muscle-specific transcription factor that can induce myogenesis in a variety of cell types in tissue culture. It is a member of a large family of proteins related by sequence homology, the helix-loop-helix (HLH) proteins. It is essential for the development of functional skeletal muscle. (provided by RefSeq)

text: Santa Cruz Biotech

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: This data represents a control being compared to experiments using read length of 32 bp

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_Myogenin_(sc-12732)_Control_32bp_EqS_2.0pct_24hr

characteristic: treatment

text: 24 h with 2.0% Equine Serum and Insulin (Wold)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: This data represents a control being compared to experiments using read length of 36 bp

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_Input_Control_36bp

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal, USF-1 (C-20). Antibody Target: USF1

text: The ubiquitously expressed cellular upstream stimulatory factor (USF) consists of USF-1 and USF-2 polypeptides which independently exhibit site-specific DNA binding and are members of the c-Myc-related family of regulatory factors containing helix-loop-helix domains. USF also contains a leucine repeat that is required for efficient DNA binding. USF was originally identified as an up- stream stimulatory factor that binds the core sequence CACGTG in the adeno- virus late promoter. These findings, together with the demonstration of coop- erative interaction between USF and the initiator-binding protein, TFII-I, raises the possibility of a more general involvement of USF in transcriptional regula- tion. While expression of both USF-1 and USF-2 species is ubiquitous, different ratios of USF homo- and heterodimers are found in different cell types.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

text: Myoblast cell line derived from thigh muscle of C3H mice after crush injury

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_USF-1_Control_50bp_EqS_2.0pct_60hr

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

characteristic: antibody description

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: This data represents a control being compared to experiments using read length of 50 bp

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Wold - Califonia Institute of Technology

text: Myoblast

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_USF-1_Control_50bp

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: immortalized

text: Immortal cells

text: Santa Cruz Biotech

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_Myogenin_(sc-12732)_Control_32bp_EqS_2.0pct_60hr

characteristic: treatment

text: 60 h with 2.0% Equine Serum and Insulin (Wold)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: mouse monoclonal antibody; epitope mapping within amino acids 138-158 of myogenin of rat origin. Antibody Target: Myogenin

characteristic: antibody description

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myocyte

text: Myocyte

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_Myogenin_(sc-12732)_Control_50bp_EqS_2.0pct_7d

characteristic: title

text: 7 d with 2.0% Equine Serum and Insulin (Wold)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: immortalized

text: Immortal cells

text: mouse monoclonal antibody raised against recombinant MyoD of mouse origin with an epitope mapping to amino acids 180-189. Antibody Target: MyoD

text: This gene encodes a nuclear protein that belongs to the basic helix-loop-helix family of transcription factors and the myogenic factors subfamily. It regulates muscle cell differentiation by inducing cell cycle arrest, a prerequisite for myogenic initiation. The protein is also involved in muscle regeneration. It activates its own transcription which may stabilize commitment to myogenesis. (provided by RefSeq)

text: Santa Cruz Biotech

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_MyoD_(sc-32758)_Control_50bp_EqS_2.0pct_7d

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

characteristic: antibody description

text: Myogenin is a muscle-specific transcription factor that can induce myogenesis in a variety of cell types in tissue culture. It is a member of a large family of proteins related by sequence homology, the helix-loop-helix (HLH) proteins. It is essential for the development of functional skeletal muscle. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: This data represents a control being compared to experiments using read length of 32 bp

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myoblast

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_Myogenin_(sc-12732)_Control_32bp

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal against peptide conjugated to KLH derived from within residues 1600 - 1700 of S. cerevisiae RNA polymerase II CTD repeat YSPTSPS, phosphorylated at S2. Antibody Target: POL2S2

text: RNA polymerase II, large subunit- specific for phosphorylated C-terminal domain.

text: Abcam

text: Barbara Wold lab

text: Myoblast cell line derived from thigh muscle of C3H mice after crush injury

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_Pol2(phosphoS2)_Control_32bp_EqS_2.0pct_60hr

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: SRF

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: SRF

characteristic: antibody description

text: Serum response transcription factor

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Wold - Califonia Institute of Technology

text: Myocyte

text: Myocyte

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_SRF_Control_32bp_EqS_2.0pct_24hr

characteristic: title

text: 24 h with 2.0% Equine Serum and Insulin (Wold)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: immortalized

text: Immortal cells

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_Input_Control_32bp_EqS_2.0pct_24hr

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myoblast

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_Input_Control_32bp

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Input

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_Input_Control_32bp_EqS_2.0pct_60hr

characteristic: treatment

text: 60 h with 2.0% Equine Serum and Insulin (Wold)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: This data represents a control being compared to experiments using read length of 50 bp

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myoblast

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_Input_Control_50bp

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Max

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_Max_Control_50bp_EqS_2.0pct_60hr

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Max

characteristic: antibody

characteristic: antibody description

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myoblast

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: immortalized

text: Immortal cells

text: NRSF

text: Mouse monoclonal. Antibody Target: NRSF

text: Neuron-restrictive silencer transcription factor

text: (Made by Protein Expression Center: pec@caltech.edu)

text: David Anderson, Caltech

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: This data represents a control being compared to experiments using read length of 32 bp

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_NRSF_Control_32bp_EqS_2.0pct_60hr

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody description

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

text: Myoblast cell line derived from thigh muscle of C3H mice after crush injury

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Wold - Califonia Institute of Technology

text: Myocyte

text: Myocyte

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_Pol2_Control_32bp_EqS_2.0pct_60hr

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: immortalized

text: Immortal cells

text: E2A.E12(V-18) is an affinity purified rabbit polyclonal antibody raised against a peptide mapping at the C-terminus of E2A.E12 of human origin. Recommended for detection of E12 and E47 of m, r and h origin by WB, IP, IF, IHC(P), ELISA and indirect FCM using PE (sc-3739)- or FITC (sc-2012)-conjugated goat anti-rabbit IgG. Antibody Target: TCF3

text: Heterodimers between TCF3 and tissue-specific basic helix-loop-helix (bHLH) proteins play major roles in determining tissue-specific cell fate during embryogenesis, like muscle or early B-cell differentiation. Dimers bind DNA on E-box motifs: 5'-CANNTG-3'. Binds to the kappa-E2 site in the kappa immunoglobulin gene enhancer.

text: Santa Cruz Biotech

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_TCF3_(SC-349)_Control_32bp_EqS_2.0pct_5d

characteristic: treatment

text: 5 d with 2.0% Equine Serum and Insulin (Wold)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: CEBPB

characteristic: antibody

text: Rabbit polyclonal IgG. Antibody Target: CEBPB

characteristic: antibody description

text: epitope mapping at the C-terminus of C/EBP-beta of rat origin

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: This data represents a control being compared to experiments using read length of 50 bp

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myocyte

text: Myocyte

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_CEBPB_Control_50bp_EqS_2.0pct_60hr

characteristic: title

text: 60 h with 2.0% Equine Serum and Insulin (Wold)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: immortalized

text: Immortal cells

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: This data represents a control being compared to experiments using read length of 36 bp

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_Input_Control_36bp_EqS_2.0pct_60hr

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: Rabbit polyclonal antibody raised against the N-terminus of FOSL1 of rat origin. Antibody Target: FOSL1

characteristic: antibody description

text: The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myoblast

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_FOSL1_(sc-605)_Control_36bp

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: immortalized

text: Immortal cells

text: mouse monoclonal antibody raised against recombinant MyoD of mouse origin with an epitope mapping to amino acids 180-189. Antibody Target: MyoD

text: This gene encodes a nuclear protein that belongs to the basic helix-loop-helix family of transcription factors and the myogenic factors subfamily. It regulates muscle cell differentiation by inducing cell cycle arrest, a prerequisite for myogenic initiation. The protein is also involved in muscle regeneration. It activates its own transcription which may stabilize commitment to myogenesis. (provided by RefSeq)

text: Santa Cruz Biotech

text: Barbara Wold lab

text: Myoblast cell line derived from thigh muscle of C3H mice after crush injury

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: This data represents a control being compared to experiments using read length of 32 bp

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

text: Wold - Califonia Institute of Technology

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_MyoD_(sc-32758)_Control_32bp_EqS_2.0pct_24hr

characteristic: treatment

text: 24 h with 2.0% Equine Serum and Insulin (Wold)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: This data represents a control being compared to experiments using read length of 50 bp

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myocyte

text: Myocyte

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_Input_Control_50bp_EqS_2.0pct_60hr

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: immortalized

text: Immortal cells

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_MyoD_(sc-32758)_Control_32bp_EqS_2.0pct_60hr

characteristic: treatment

text: 60 h with 2.0% Equine Serum and Insulin (Wold)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

characteristic: antibody description

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myoblast

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_MyoD_(sc-32758)_Control_32bp

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: immortalized

text: Immortal cells

text: rabbit polyclonal. Antibody Target: E2F4

text: mapping at the C-terminus of E2F4 of human origin

text: Santa Cruz Biotech

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_E2F4_Control_50bp_EqS_2.0pct_60hr

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: CTCF

characteristic: antibody

text: rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody description

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myoblast

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

characteristic: title


characteristic: External Id

text: University of California, Riverside

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Hordeum vulgare subsp. vulgare

text: Morex Barley BAC pools Hv8


CK ST

text: Minzu University of China

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: In recent years, a close Arabidopsis relative, Thellungiella halophila (also called Thellungiella salsuginea) has been reported by several groups to be used as an appropriate halophytic model for plant salt stress studies. Thellungiella can tolerate salinity shock up to 500 mmol/L NaCl and grows in salinity far beyond the capacity of Arabidopsis.

characteristic: description

text: Eutrema halophilum

text: unstressed and salt stressed Thellungiella halophila root transcriptome


text: University of California, Riverside

text: live

text: Generic

text: Hordeum vulgare subsp. vulgare

text: Morex Barley BAC Pools Hv9


text: University of California, Riverside

text: live

text: Generic

text: Hordeum vulgare subsp. vulgare

text: Morex Barley BAC Pools Hv3-9


text: Uppsala University

text: live

text: Generic

text: Ostrich samples from Sahlins struts, Borlange, Sweden. Preserved brain and liver tissues in RNAlater (Qiagen, Hilden, Germany). This sample contains pooled RNA from male brain tissue, individual: 13 and 15

text: Struthio camelus

text: Absence of dosage compensation and the arrested stage of sex chromosome evolution in ostriches: BM1


oriental river prawn

text: Shanghai Ocean University

text: live

text: Generic

text: Macrobrachium nipponense

text: Macrobrachium nipponense


text: Beijing Genome Institute

text: live

text: Generic

text: Capra hircus

text: Generic sample from Capra hircus


Bacillus psychrosaccharolyticus

text: Complutense University

text: live

text: Generic

text: Peribacillus psychrosaccharolyticus ATCC 23296

text: ATCC 23296

text: Bacillus psychrosaccharolyticus Genome Sequence

text: type strain of Bacillus psychrosaccharolyticus

characteristic: type material


Bordetella holmesii 44057

text: Columbia University

text: live

text: Generic

text: Bordetella holmesii 44057 Ion Torrent 316 chip sequencing.

text: Bordetella holmesii 44057

text: Bordetella holmesii 44057 Ion Torrent 316 run


text: DOE Joint Genome Institute

text: live

text: Generic

text: Saccharomyces cerevisiae YB210

text: Saccharomyces cerevisiae YB210

characteristic: sample number

text: Generic sample from Saccharomyces cerevisiae YB210


text: DOE Joint Genome Institute

text: live

text: Generic

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288C

text: Generic sample from Saccharomyces cerevisiae S288c


text: NIH Intramural Sequencing Center

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Acinetobacter baumannii ABNIH2 genomic sample

text: Acinetobacter baumannii ABNIH2

text: Generic sample from Acinetobacter baumannii ABNIH2


text: Gene Expression Omnibus

text: live

text: Generic

text: MGH

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Surgery

characteristic: collection method

text: Smooth muscle from wall of colon obtained during surgery and confirmed by pathology examination to be healthy tissue

text: NL smooth muscle, colon rmvd as part of abdmnl Sarc.

characteristic: disease

text: 56.0 Years

characteristic: donor age

text: Caucasian

characteristic: donor ethnicity

characteristic: donor health status

characteristic: donor id

text: female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Colon

characteristic: tissue depot

text: Smooth Muscle

characteristic: tissue type

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rush University Medical Center

text: Primary Tissue

text: Post-Mortem

text: specified brain region obtained by post-mortem collection in a longitudinal study

text: no AD evident at demise

text: 81.0 Years

text: no AD evident at demise

text: male

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Brain

text: Cingulate Gyrus

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

text: Rush University Medical Center

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Post-Mortem

characteristic: collection method

characteristic: description

text: no AD present

characteristic: disease

text: 73.0 Years

characteristic: donor age

text: no AD present

characteristic: donor health status

text: male

text: genomic DNA

text: Homo sapiens

text: Brain

text: Hippocampus Middle

text: Generic sample from Homo sapiens


BioSam 157 REMC 19

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: MGH

text: Primary Tissue

text: Surgery

text: Primary colonic mucosal tissue obtained during surgery and confirmed by pathology examination to be healthy tissue

text: NL colonic mucosa, colon rmvd as part of abmnl Sarc

text: 56.0 Years

text: Caucasian

characteristic: donor ethnicity

characteristic: donor id

text: female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Colon

characteristic: tissue depot

text: Colonic Mucosa

characteristic: tissue type

text: Generic sample from Homo sapiens


BioSam 309

text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: MGH

text: Primary Tissue

text: Surgery

text: Smooth muscle from wall of duodenum obtained during surgery and confirmed by pathology examination to be healthy tissue

text: NL smth muscle, ddnum rmvd as part of whipple operation because of autoimmune pancreatitis (type1)

text: Caucasian

text: Donor 174 REMC 28

text: male

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Duodenum

text: Smooth Muscle

text: Generic sample from Homo sapiens


BioSam 311

text: Gene Expression Omnibus

text: live

text: Generic

text: BioSAli 396

characteristic: batch

text: Harvard

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: CD184+ endoderm cultured cells

characteristic: cell type

text: CD184+ endoderm differentiated in vitro from stem cells

characteristic: description

text: in vitro culture

characteristic: differentiation method

text: differentiated

characteristic: differentiation stage

text: presumed normal

characteristic: disease

text: HUES64 derived CD184+

characteristic: line

text: endoderm

characteristic: lineage

text: RPMI 100ng/mL Activin A 50ng/mL Wnt3a

characteristic: medium

text: genomic DNA

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FHCRC

text: Primary Cell

text: Bulk lymphocytes were purified from cord blood and further selected by flow cytometry

text: presumed normal

text: presumed normal

characteristic: donor health status

characteristic: donor id

text: female

characteristic: donor sex

characteristic: markers

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


BioSam 575

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: BioSAli 712

characteristic: batch

text: Harvard

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: HUES64 differentiated with Activin A, BMP4, VEGF and bFGF for 24 hours, then with BMP4, VEGF and bFGF for an additional 4 days.

characteristic: description

text: adherence

characteristic: differentiation method

text: intermediate

characteristic: differentiation stage

text: presumed normal

characteristic: disease

text: CD56+ mesoderm

characteristic: line

text: mesoderm

characteristic: lineage

text: Day 0-1: DMEM F12, 0.5% FBS, Activin A (100ng/mL) BMP4 (100ng/mL), VEGF (100ng/mL), and bFGF (20ng/mL). Days 1-5: DMEM F12, 0.5% FBS, BMP4 (100ng/mL), VEGF (100ng/mL), and bFGF (20ng/mL)

characteristic: medium

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

text: Generic sample from Homo sapiens


BioSam 577

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: BioSAli 713

text: Harvard

text: Cell Line

text: adherence

text: intermediate

text: presumed normal

text: CD56+ mesoderm

text: mesoderm

text: genomic DNA

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens

characteristic: title


BioSam 321 REMC 27

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: MGH

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Surgery

characteristic: collection method

text: normal liver,resected from patient with metastatic carcinoid

characteristic: description

text: patient with metastatic carcinoid

text: 45.0 Years

characteristic: donor age

text: Caucasian

characteristic: donor ethnicity

text: patient with metastatic carcinoid

characteristic: donor health status

text: Donor 177 REMC 27

characteristic: donor id

text: female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Liver

characteristic: tissue depot

text: Adult Liver

characteristic: tissue type

text: Generic sample from Homo sapiens


characteristic: External Id

text: NIH Intramural Sequencing Center

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

characteristic: biosamplemodel

text: Acinetobacter baumannii ABNIH3 genomic sample

text: Acinetobacter baumannii ABNIH3

characteristic: organism

characteristic: strain

text: Generic sample from Acinetobacter baumannii ABNIH3


C.socl

text: UC Berkeley

text: live

text: Generic

characteristic: SRA accession

text: Ctenomys sociabilis

text: Ctenomys sociabilis mRNA sequencing

characteristic: title


text: UC Berkeley

text: live

text: Generic

text: Ctenomys sociabilis

text: captive animals


text: DOE Joint Genome Institute

text: live

text: Generic

text: Saccharomyces cerevisiae Y2209

characteristic: description

text: Saccharomyces cerevisiae Y2209

characteristic: sample number

text: Generic sample from Saccharomyces cerevisiae Y2209


Dsim-HiSeq

text: Princeton University

text: live

text: Generic

text: Drosophila simulans

text: A second generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence.


text: College of Horticulture, Northwest A&F University

text: live

text: Generic

text: Youngle

characteristic: cultivar

text: cloned by PCR using SRAP primers

text: development ovule

characteristic: dev-stage

text: E.coli Top10

characteristic: lab-host

text: Vitis vinifera

text: ovule

characteristic: tissue-type

text: Differentially expressed gene from the ovule of seedless grape Youngle

text: pGEM-T easy

characteristic: vector


characteristic: External Id

text: IBFA Institut de biologie fondamentale et appliquee

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Sepia officinalis

text: male

characteristic: sex

text: Cuttlefish EST library

text: Plasmid


Dsim-GAII

text: Princeton University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Drosophila simulans


PRJNA47679.Vibrio phage VBM1

text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

characteristic: collection date

text: Lobster Hatchery, Stonington, ME

text: DNA:ds Viral DNA

characteristic: isolation source

text: Vibrio phage VBM1

characteristic: organism

text: Vibrio phage VBM1

characteristic: sample name

text: Uncultured virus

characteristic: specific host

characteristic: strain

text: Generic sample from Vibrio phage VBM1

characteristic: title


PRJNA47885.Tetraselmis viridis virus N1

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Lake Nordåsvatnet

text: DNA:ds Viral DNA

text: Tetraselmis viridis virus N1

text: Tetraselmis viridis virus N1

text: Uncultured virus

text: Generic sample from Tetraselmis viridis virus N1


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Corynebacterium sp. KPL1857

text: Generic sample from Corynebacterium sp. KPL1857


PRJNA28331.Aeromonas veronii AER39

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Aeromonas veronii AER39

text: Aeromonas veronii AER39

text: Generic sample from Aeromonas veronii AER39


PRJNA28331.Aeromonas veronii AER397

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Aeromonas veronii AER397

text: Aeromonas veronii AER397

text: Generic sample from Aeromonas veronii AER397


PRJNA28331.Aeromonas veronii AMC34

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Aeromonas veronii AMC34

text: Aeromonas veronii AMC34

text: Generic sample from Aeromonas veronii AMC34


PRJNA28331.Aeromonas veronii AMC35

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: Aeromonas veronii AMC35

text: Aeromonas veronii AMC35

text: Generic sample from Aeromonas veronii AMC35


PRJNA28331.Bacteroides fragilis HMW 615

text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Bacteroides fragilis HMW 615

text: Bacteroides fragilis HMW 615

text: HMW 615

text: Generic sample from Bacteroides fragilis HMW 615


PRJNA28331.Bacteroides fragilis HMW 610

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Bacteroides fragilis HMW 610

text: Bacteroides fragilis HMW 610

text: HMW 610

text: Generic sample from Bacteroides fragilis HMW 610


PRJNA28331.Aeromonas hydrophila SSU

text: Broad Institute

text: live

text: Generic

text: Generic

text: Aeromonas hydrophila SSU

text: Aeromonas hydrophila SSU

text: SSU

text: Generic sample from Aeromonas hydrophila SSU


text: National Center for Genome Resources

text: live

text: Generic

text: Generic

text: Oryza sativa Japonica Group

characteristic: sample id

text: Oryza sativa Bengal

text: Japonica

characteristic: variant name


text: National Center for Genome Resources

text: live

text: Generic

text: Generic

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Bowman

text: Japonica


text: National Center for Genome Resources

text: live

text: Generic

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa Cocodrie

text: Japonica


text: National Center for Genome Resources

text: live

text: Generic

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa Francis

text: Japonica


text: National Center for Genome Resources

text: live

text: Generic

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa Jasmine85

text: Japonica


text: National Center for Genome Resources

text: live

text: Generic

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa L-201

text: Japonica


text: National Center for Genome Resources

text: live

text: Generic

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa Lemont

text: Japonica


text: National Center for Genome Resources

text: live

text: Generic

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa MCR010277

text: Japonica


text: National Center for Genome Resources

text: live

text: Generic

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa Shu_Feng_121-1655

text: Japonica


text: National Center for Genome Resources

text: live

text: Generic

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa Tequing

text: Japonica


text: National Center for Genome Resources

text: live

text: Generic

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa Wells

text: Japonica


H3K27me3 WT MEF

text: RIKEN

text: live

text: Generic

text: Mus musculus

text: ChIP-Seq of H3K27me3 on WT MEF


H3K27me3 L307R

text: RIKEN

text: live

text: Generic

text: Mus musculus

text: ChIP-Seq of H3K27me3 on Phc2 mutant MEF


text: Uppsala University

text: live

text: Generic

text: DNA from a five-gaited icelandic horse

characteristic: description

text: Equus caballus

text: Five-gaited icelandic horse


text: Uppsala University

text: live

text: Generic

text: DNA from a four-gaited icelandic horse

text: Equus caballus

text: Four-gaited Icelandic horse


text: CBRG

text: live

text: Generic

text: MEF

characteristic: cell line

text: male

characteristic: gender

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: wild type male embryonic fibroblast cell line

text: WT XY MEF


characteristic: External Id

text: CBRG

text: live

text: Generic

text: MEF

text: male

text: Mus musculus

text: smcHD1-/- male embryonic fibroblast cell line

text: MUT XY MEF

characteristic: title


text: CBRG

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: MEF

text: female

text: wild type

text: Mus musculus

text: wild type female embryonic fibroblast cell line

text: WT XX MEF


text: CBRG

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: MEF

text: female

text: Mus musculus

text: smcHD1-/- female embryonic fibroblast cell line

text: MUT XX MEF


text: CBRG

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: PGK

text: female

text: wild type

text: Mus musculus

text: wild type female embryonic stem cell line paired end 1


text: CBRG

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: PGK

text: female

text: wild type

text: Mus musculus

text: wild type female embryonic stem cell line paired end 2


text: NIH Intramural Sequencing Center

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Acinetobacter baumannii ABNIH4 genomic sample

text: Acinetobacter baumannii ABNIH4

characteristic: strain

text: Generic sample from Acinetobacter baumannii ABNIH4


BMalayi

text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Resequencing antibiotic-treated Brugia malayi

text: Brugia malayi

characteristic: organism

text: Antibiotic Treated Brugia malayi


text: Genetics, Hebrew University

text: live

text: Generic

text: Embryonic Stem Cells

characteristic: cell type

text: Mus musculus

characteristic: passages

text: Embryonic Stem Cells (R1)

text: ESC NPA RNA-seq


text: Genetics, Hebrew University

text: live

text: Generic

text: ESC-derived Neuronal Progenitor Cells

text: Mus musculus

text: ESC-derived Neuronal Progenitor Cells

text: NPC NPA RNA-seq


text: Bartel lab, Whitehead Institute

text: live

text: Generic

characteristic: developmental stage

text: Caenorhabditis elegans

text: small RNA_L4


text: Bartel lab, Whitehead Institute

text: live

text: Generic

text: Young adult

text: Caenorhabditis elegans

text: small RNA_Young adult


text: Jindan Yu, Medicine, Northwestern Univ.

text: live

text: Generic

text: LNCaP

characteristic: cell line

text: anti-AR

characteristic: chip antibody

text: Millipore

characteristic: chip antibody vendor

text: control

characteristic: genotype/variation

text: Homo sapiens

text: LNCaP

text: AR_ChIP-seq_shCtrl_R1881, biological replicate 1


characteristic: External Id

text: Jindan Yu, Medicine, Northwestern Univ.

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: LNCaP

text: anti-AR

text: Millipore

text: FoxA1 knockdown

text: Homo sapiens

text: LNCaP

text: AR_ChIP-seq_shFoxA1_R1881, biological replicate 1

characteristic: title


text: Jindan Yu, Medicine, Northwestern Univ.

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: LNCaP

text: Abcam

text: control

text: Homo sapiens

text: LNCaP


text: Jindan Yu, Medicine, Northwestern Univ.

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: LNCaP

text: Abcam

text: FoxA1 knockdown

text: Homo sapiens

text: LNCaP


text: KUMC

text: live

text: Generic

text: Blastocyst derived trophoblast stem cells

characteristic: cell type

text: TEAD4 (Abcam, Cat. No. ab58310, Lot #GR33778-1)

text: wild type

characteristic: genotype

text: Mus musculus

characteristic: organism

text: trophoblast stem cells


text: KUMC

text: live

text: Generic

text: Purified IgG1 k isotype control (BD Biosciences, Cat. No. 554121, Lot #70274)

text: wild type

text: Mus musculus

text: trophoblast stem cells

text: IgG


text: KUMC

text: live

text: Generic

text: wild type

text: Mus musculus

text: trophoblast stem cells

text: Input DNA


Clint Chimp

text: University of Nebraska - Non Human Primate Genomics Center

text: live

text: Generic

text: Pan troglodytes

text: Clint Chimp DNA sequencing


text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

text: D. melanogaster BG3-C2 cell line, untreated


text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

text: D. melanogaster BG3-C2 cell line, 24h 20E


text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

text: D. melanogaster BG3-C2 cell line, 5h 20E


text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

text: D. melanogaster BG3-C2 Cell Line


text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

text: D. melanogaster Kc167 Cell Line Cytoplasmic RNA


text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

text: D. melanogaster Kc167 Cell Line Nuclear RNA


text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

text: D. melanogaster S2-DRSC Cell Line


text: DOE Joint Genome Institute

text: live

text: Generic

text: Serpula lacrymans S7.9

characteristic: description

text: Serpula lacrymans

characteristic: sample number

characteristic: strain

text: Generic sample from Serpula lacrymans


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oran Swab sample SCG21


text: Dartmouth Medical School

text: live

text: Generic

characteristic: antibody

characteristic: cell line

text: Homo sapiens

text: Breast Cancer Cell Line

text: Untreated

characteristic: treatment

text: Abcam

characteristic: vendor


characteristic: External Id

text: Dartmouth Medical School

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: Breast Cancer Cell Line

text: H3K36me3_E2 treated

characteristic: title

text: E2 treated (45mins)

text: Abcam


text: Dartmouth Medical School

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: Long-term estrogen deprived breast cancer cell line

text: Untreated

text: Millipore


text: Dartmouth Medical School

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

text: Untreated

text: Abcam


text: Dartmouth Medical School

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: Input


text: DOE Joint Genome Institute

text: live

text: Generic

text: Didymella exigua CBS 183.55

characteristic: description

text: Didymella exigua

characteristic: sample number

text: CBS 183.55

text: Generic sample from Didymella exigua


text: DOE Joint Genome Institute

text: live

text: Generic

text: Phaeocystis globosa

text: Phaeocystis globosa

text: Generic sample from Phaeocystis globosa


text: live

text: Generic

text: Escherichia coli P0299483.1

characteristic: strain

text: Escherichia coli P0299483.1


text: live

text: Generic

text: Escherichia coli P0301904.3

text: Escherichia coli P0301904.3


text: live

text: Generic

text: Escherichia coli P0299483.2

text: Escherichia coli P0299483.2


text: live

text: Generic

text: Escherichia coli P0299483.3

text: Escherichia coli P0299483.3


text: live

text: Generic

text: Escherichia coli P0304799.3

text: Escherichia coli P0304799.3


text: live

text: Generic

text: Escherichia coli 179100

text: Escherichia coli 179100


text: live

text: Generic

text: Escherichia coli 2733950

text: Escherichia coli 2733950


text: live

text: Generic

text: Escherichia coli 2854350

text: Escherichia coli 2854350


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG22


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG23


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG24


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG25


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG26


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG27


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG28


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG29


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG30


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG31


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG32


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG33


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG34


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG35


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG36


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG37


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG38


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG39


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG40


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG41


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG42


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG43


text: University of British Columbia

text: live

text: Generic

text: human oral metagenome

text: Human Oral Swab sample SCG44


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG45


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG46


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG47


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG48


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG49


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG50


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG51


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG52


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG53


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG54


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG55


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG56


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG57


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG58


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG59


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG60


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG61


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG62


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG63


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG64


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG65


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG66


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG67


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG68


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG69


text: University of British Columbia

text: live

text: Generic

text: marine metagenome

text: Sea Water Enrichment Culture SCG70


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG71


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG72


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG73


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG74


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG75


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG76


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG77


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG78


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG79


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG80


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG81


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG82


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG83


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG84


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG85


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG86


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG87


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG88


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG89


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG90


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG91


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Marine Sediments sample SCG92


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Control Marine Sediments sample SCG93


text: University of British Columbia

text: live

text: Generic

text: marine sediment metagenome

text: Control Marine Sediments sample SCG94


text: live

text: Generic

text: Escherichia coli P0298942.4

text: Escherichia coli P0298942.4


text: DOE Joint Genome Institute

text: live

text: Generic

text: Boechera stricta LTM

text: Boechera stricta

text: LTM

text: Generic sample from Boechera stricta


text: live

text: Generic

text: Escherichia coli MP020980.1

text: Escherichia coli MP020980.1


text: live

text: Generic

text: Escherichia coli P0298942.3

text: Escherichia coli P0298942.3


text: live

text: Generic

text: Escherichia coli P0301867.2

text: Escherichia coli P0301867.2


text: live

text: Generic

text: Escherichia coli P0301867.13

text: Escherichia coli P0301867.13


text: live

text: Generic

text: Escherichia coli P0302293.7

text: Escherichia coli P0302293.7


text: live

text: Generic

text: Escherichia coli P0305260.2

text: Escherichia coli P0305260.2


text: live

text: Generic

text: Escherichia coli p0305293.14

text: Escherichia coli P0305293.14


RNA-Seq from Human Hair Shaft

text: Dept. of Dermatology, School of Medicine, UC San Diego

text: live

text: Generic

text: This sample consists of RNA extracted from a mixture of hair from 5 human adults.

text: Homo sapiens

text: The post-apoptotic fate of RNAs identified through high-throughput sequencing of human hair


text: School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center

text: live

text: Generic

text: Gossypium hirsutum

text: Gossypium hirsutum differential display cDNA library


text: Agricultural Biotechnology Research Institute of Iran (ABRII)

text: live

text: Generic

text: Differentially transcript derived fragments (TDFs) from Resistant cultivar Wang shui-bai and susceptible cultivar Falat were cloned in pGEMT-Easy vector

text: 2-3 leaves

characteristic: dev-stage

text: Leaf

characteristic: organ

text: Triticum aestivum

text: KHO-Wheat-septoria tritici library

text: Plasmid

text: pGEM-T Easy

characteristic: vector


characteristic: External Id

text: University of California, Riverside

text: live

text: Generic

text: Hordeum vulgare subsp. vulgare

text: Morex Barley BAC Pools Hv3


DomesticPig

text: icipe

characteristic: INSDC center name

text: live

text: Generic

text: MID_Name MID_sequence Pool_number molecule_type #of_pigs_per_pool MID1 ACACGACGACT Pool1 DNA 3 MID2 ACACGTAGTAT Pool2 DNA 1 MID3 ACACTACTCGT Pool3 DNA 7 MID4 ACGACACGTAT Pool4 DNA 1 MID5 ACGAGTAGACT Pool5 DNA 4 MID7 ACGTACACACT Pool6 DNA 3 MID8 ACGTACTGTGT Pool1 RNA 3 MID9 ACGTAGATCGT Pool2 RNA 1 MID10 ACTACGTCTCT Pool3 RNA 7 MID11 ACTATACGAGT Pool4 RNA 1 MID12 ACTCGCGTCGT Pool5 RNA 4 MID14 AGTACGAGAGT Pool6 RNA 3

text: Sus scrofa

text: Domestic pig Uganda metagenomics


male fish

text: XM U

characteristic: INSDC first public

text: live

text: Generic

text: Sebastiscus marmoratus

text: Sebastiscus marmoratus (male)


Control sample

text: The First Institute of Oceanography, State Oceanic Administration

text: live

text: Generic

text: Antarctic mosses were collected from the terrene near the Zhongshan Research Station of Antarctica (69.8S, 77.8E) during the twenty-fourth Antarctic expedition of China in 2008. Samples were placed in plastic containers and transported to China, where they were then cultivated on soil media in an illumination incubator at 16.5*C and 90% relative humidity, at light density of 80 µmol photons·m-2·s-1 with continuous light. Mosses cultivated under this condition were used for experimental control. For the cold treatments, mosses were transferred to 4*C and incubated for 6h. The gametophyte tissues (moss leaves and stems) were frozen by liquid nitrogen immediately.

text: Pohlia nutans

text: The control sample of Antarctic moss Pohlia nutans transcriptome sequencing

characteristic: title


Cold-treatment sample

characteristic: INSDC last update

text: live

text: Generic

text: Pohlia nutans

text: Cold-treatment sample of Antarctic moss Pohlia nutans transcriptome sequencing


Delta-set3 H3K9ac (first run)

text: Weizmann Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: The ChIP-Seq experiments were done on BY4741 strains, with 9 different ORF (HOS2, SET3, SAP30, PHO23, RPD3, BRE1, RAD6, UBP8, UBP10) replaced with KANMX cassette. Chromatin immuno-precipitation was done as described previously (Liu et al., 2005), with some modifications. Samples were sonicated with bioruptor sonicator for 60 minutes (30 sec intervals), and were precipitated with H3K9-acetyl antibody (Abcam ab12179) and conjugated to protein A beads. High throughput sequencing was done using Illumina GAII system in the department of biological services, Weizmann Institute of science, Israel.

text: Saccharomyces cerevisiae S288C

text: Delta-set3 H3K9ac (first run)


text: Baker IDI Heart & Diabetes Institute

text: live

characteristic: INSDC status

text: Generic

text: HAEC

characteristic: cell line

text: Primary Human Aortic Endothelial Cells

characteristic: cell type

text: Homo sapiens

text: Passage 4-6

characteristic: passages

text: HAEC_500 nM TSA_12hr

text: 500 nM Trichostatin A (TSA) for 12hr

characteristic: treated with


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Homo sapiens

characteristic: organism

text: Passage 4-6


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Millipore

characteristic: chip antibody vendor

text: Homo sapiens

text: Passage 4-6

text: HAEC H3K9/14ac control1


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Abcam

text: Homo sapiens

text: Passage 4-6

text: HAEC H3K9Me3 control1


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Activ Motif

text: Homo sapiens

text: Passage 4-6

text: HAEC H3K4Me3 control1


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Millipore

text: Homo sapiens

text: Passage 4-6

text: HAEC H3K9/14ac control2


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Activ Motif

text: Homo sapiens

text: Passage 4-6

text: HAEC H3K4Me3 control2


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Abcam

text: Homo sapiens

text: Passage 4-6

text: HAEC H3K9Me3 control2


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Millipore

text: Homo sapiens

text: Passage 4-6

text: HAEC H3K9/14ac control3


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Activ Motif

text: Homo sapiens

text: Passage 4-6

text: HAEC H3K4Me3 control3


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Abcam

text: Homo sapiens

text: Passage 4-6

text: HAEC H3K9Me3 control3


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Millipore

text: Homo sapiens

text: Passage 4-6

text: HAEC_H3K9/14ac_500nM TSA_12h

text: HAEC H3K9/14ac TSA1


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Abcam

text: Homo sapiens

text: Passage 4-6

text: HAEC_H3K9Me3_500nM TSA_12h

text: HAEC H3K9Me3 TSA1


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Activ Motif

text: Homo sapiens

text: Passage 4-6

text: HAEC_H3K4Me3_500nM TSA_12h

text: HAEC H3K4Me3 TSA1


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Millipore

text: Homo sapiens

text: Passage 4-6

text: HAEC_H3K9/14ac_500nM TSA_12h

text: HAEC H3K9/14ac TSA2


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Activ Motif

text: Homo sapiens

text: Passage 4-6

text: HAEC_H3K4Me3_500nM TSA_12h

text: HAEC H3K4Me3 TSA2


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Abcam

text: Homo sapiens

text: Passage 4-6

text: HAEC_H3K9Me3_500nM TSA_12h

text: HAEC H3K9Me3 TSA2


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Millipore

text: Homo sapiens

text: Passage 4-6

text: HAEC_H3K9/14ac_500nM TSA_12h

text: HAEC H3K9/14ac TSA3


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Activ Motif

text: Homo sapiens

text: Passage 4-6

text: HAEC_H3K4Me3_500nM TSA_12h

text: HAEC H3K4Me3 TSA3


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Abcam

text: Homo sapiens

text: Passage 4-6

text: HAEC_H3K9Me3_500nM TSA_12h

text: HAEC H3K9Me3 TSA3


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Homo sapiens

text: Passage 4-6

text: HAEC input control1


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Homo sapiens

text: Passage 4-6

text: HAEC input control2


text: Baker IDI Heart & Diabetes Institute

text: live

text: Generic

text: HAEC

text: Primary Human Aortic Endothelial Cells

text: Homo sapiens

text: Passage 4-6

text: HAEC_input_500nM TSA_12h

text: HAEC input TSA


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

text: 4 weeks

characteristic: age

text: Normal diet (10% fat) for 18 wks

characteristic: feeding

text: male

characteristic: gender

text: Mus musculus

text: liver_Normal diet (10% fat)

characteristic: strain

text: liver

characteristic: tissue

text: No.4 Liver_SAGE


characteristic: External Id

text: Iwate Biotechnology Reserch Center

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: 4 weeks

text: Normal diet (10% fat) for 18 wks

text: male

text: Mus musculus

text: liver_Normal diet (10% fat)

text: liver

text: No.5 Liver_SAGE

characteristic: title


text: Iwate Biotechnology Reserch Center

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 4 weeks

text: Normal diet (10% fat) for 18 wks

text: male

text: Mus musculus

text: liver_Normal diet (10% fat)

text: liver

text: No.7 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

characteristic: NCBI submission model

text: 4 weeks

text: Normal diet (10% fat) for 18 wks

text: male

text: Mus musculus

text: liver_Normal diet (10% fat)

text: liver

text: No.8 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

characteristic: NCBI submission package

text: 4 weeks

text: Normal diet + 1% WEPAK for 18 wks

text: male

text: Mus musculus

text: liver_Normal diet + 1% WEPAK

text: liver

text: No.11 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

characteristic: SRA accession

text: 4 weeks

text: Normal diet + 1% WEPAK for 18 wks

text: male

text: Mus musculus

text: liver_Normal diet + 1% WEPAK

text: liver

text: No.12 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

text: 4 weeks

text: Normal diet + 1% WEPAK for 18 wks

text: male

text: Mus musculus

characteristic: organism

text: liver_Normal diet + 1% WEPAK

text: liver

text: No.15 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

text: 4 weeks

text: Normal diet + 1% WEPAK for 18 wks

text: male

text: Mus musculus

text: liver_Normal diet + 1% WEPAK

text: liver

text: No.20 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

text: 4 weeks

text: High fat diet (45% fat) for 18 wks

text: male

text: Mus musculus

text: liver_High fat diet (45% fat)

text: liver

text: No.23 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

text: 4 weeks

text: High fat diet (45% fat) for 18 wks

text: male

text: Mus musculus

text: liver_High fat diet (45% fat)

text: liver

text: No.25 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

text: 4 weeks

text: High fat diet (45% fat) for 18 wks

text: male

text: Mus musculus

text: liver_High fat diet (45% fat)

text: liver

text: No.28 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

text: 4 weeks

text: High fat diet (45% fat) for 18 wks

text: male

text: Mus musculus

text: liver_High fat diet (45% fat)

text: liver

text: No.29 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

text: 4 weeks

text: High fat diet + 1% WEPAK for 18 wks

text: male

text: Mus musculus

text: liver_High fat diet + 1% WEPAK

text: liver

text: No.34 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

text: 4 weeks

text: High fat diet + 1% WEPAK for 18 wks

text: male

text: Mus musculus

text: liver_High fat diet + 1% WEPAK

text: liver

text: No.36 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

text: 4 weeks

text: High fat diet + 1% WEPAK for 18 wks

text: male

text: Mus musculus

text: liver_High fat diet + 1% WEPAK

text: liver

text: No.38 Liver_SAGE


text: Iwate Biotechnology Reserch Center

text: live

text: Generic

text: 4 weeks

text: High fat diet + 1% WEPAK for 18 wks

text: male

text: Mus musculus

text: liver_High fat diet + 1% WEPAK

text: liver

text: No.40 Liver_SAGE


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Escherichia coli 174750

text: Escherichia coli 174750


name: Metatranscriptome from kimchi microbiome day 7

text: School of Biological Sciences, Chung-Ang University

text: live

text: Generic

text: Individual samples (J1, J7, J13, J18, J25, J29) were obtained for metatranscriptome analysis of microbiome during fermentation period (4°C) of food sample (Kimchi, Korean traditional fermented food). The samples were coded as Jx, where x designates the sampling day during fermentation.

characteristic: description

text: food metagenome

text: metatranscriptome from microbiome sample day 7 obtained during kimchi fermentation


name: Metatranscriptome from kimchi microbiome day 13

text: live

text: Generic

text: food metagenome

text: metatranscriptome from microbiome sample day 13 obtained during kimchi fermentation


name: Metatranscriptome from kimchi microbiome day 18

text: live

text: Generic

text: food metagenome

text: metatranscriptome from microbiome sample day 18 obtained during kimchi fermentation


name: Metatranscriptome from kimchi microbiome day 25

text: live

text: Generic

text: food metagenome

text: metatranscriptome from microbiome sample day 25 obtained during kimchi fermentation


name: Metatranscriptome from kimchi microbiome day 29

text: live

text: Generic

text: food metagenome

text: metatranscriptome from microbiome sample day 29 obtained during kimchi fermentation