name: Population genomics in Atlantic cod (NA)

text: University of Nordland

text: live

text: Generic

text: Muscle tissue was collected from 96 cod caught in the Barents Sea north of 72*00’N ’, R/V G.O. Sars from 12. February - 14. March 2007. The cod were caught by pelagic and demersal trawl. Sixty-four of these 96 individuals were caught north of 73*00’N ’. Genomic DNA was isolated with Roche High Pure PCR Template Preparation Kit and nexttec™ Genomic DNA Isolation Kit for Tissue and Cells according to manufacturers specifications.

characteristic: description

text: Gadus morhua

text: NE Arctic (NA) cod, Barents sea_44


status: PUBLIC

characteristic: External Id

text: Non-coding RNAs and viral infections, UPR 9002 - Architecture et Réactivité de l'ARN, CNRS - IBMC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Sup-T-1 (CRL-1942; ATCC)

tag: attribute

characteristic: host cell line

text: T lymphocyte

characteristic: host cell type

text: Human betaherpesvirus 6B

characteristic: organism

text: Total RNA extracted from HHV-6 infected Sup-T-1 cells

text: Homo sapiens

characteristic: specific host

characteristic: title


text: live

text: Generic

characteristic: antibody for ip

text: Sup-T-1 (CRL-1942; ATCC)

text: T lymphocyte

text: Human betaherpesvirus 6B

text: Ago 2 immunoprecipitated RNA extracted from HHV-6 infected Sup-T-1 cells

text: Homo sapiens


text: ChemE & eScience Institute, University of Washington

text: live

text: Generic

text: Porphyromonas gingivalis

text: wild-type sample, replicate 1

text: wild-type

characteristic: strain

text: wild-type sample, replicate 1


text: live

text: Generic

text: Porphyromonas gingivalis

text: wild-type sample, replicate 2

text: wild-type

text: wild-type sample, replicate 2


text: live

text: Generic

text: Porphyromonas gingivalis

text: wild-type sample, replicate 3

text: wild-type

text: wild-type sample, replicate 3


text: live

text: Generic

text: Porphyromonas gingivalis

text: luxS deletion mutant, replicate 1

text: mutant

text: luxS deletion mutant, replicate 1


text: live

text: Generic

text: Porphyromonas gingivalis

text: luxS deletion mutant, replicate 2

text: mutant

text: luxS deletion mutant, replicate 2


text: live

text: Generic

text: Porphyromonas gingivalis

text: luxS deletion mutant, replicate 3

text: mutant

text: luxS deletion mutant, replicate 3


text: live

text: Generic

text: Porphyromonas gingivalis

text: GppX mutant, replicate 1

text: mutant

text: GppX mutant, replicate 1


text: live

text: Generic

text: Porphyromonas gingivalis

text: GppX mutant, replicate 2

text: mutant

text: GppX mutant, replicate 2


text: live

text: Generic

text: Porphyromonas gingivalis

text: cdhR mutant, replicate 1

text: mutant

text: cdhR mutant, replicate 1


text: live

text: Generic

text: Porphyromonas gingivalis

text: cdhR mutant, replicate 2

text: mutant

text: cdhR mutant, replicate 2


text: Mattias Mannervik, Wenner-Gren Institute, Stockholm University

text: live

text: Generic

text: rabbit anti-Drosophila CBP

characteristic: chip antibody

text: 2-4h embryo

characteristic: developmental stage

text: w1118 (wild type)

characteristic: genotype/variation

text: Drosophila melanogaster

text: WT_CBP ChIP

text: CBP w


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: rabbit anti-Drosophila CBP

text: 2-4h embryo

text: gd7 (lacking intranuclear Dorsal)

text: Drosophila melanogaster

text: gd7_CBP ChIP

text: CBP gd7


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 2-4h embryo

text: w1118 (wild type)

text: Drosophila melanogaster

text: input w DNA


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 2-4h embryo

text: gd7 (lacking intranuclear Dorsal)

text: Drosophila melanogaster

text: input gd7 DNA


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a male progeny of two hatchery fish.

characteristic: description

text: Oncorhynchus mykiss

characteristic: organism


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a female progeny of two hatchery fish.

text: Oncorhynchus mykiss

characteristic: title


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a male progeny of two wild fish.

text: Oncorhynchus mykiss


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a female progeny of two wild fish.

text: Oncorhynchus mykiss


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a female progeny of two hatchery fish

text: Oncorhynchus mykiss


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a female progeny of a wild female and a hatchery male

text: Oncorhynchus mykiss


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a male progeny of a hatchery female and a wild male.

text: Oncorhynchus mykiss


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a female progeny of a hatchery female and a wild male.

text: Oncorhynchus mykiss


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a male progeny of a hatchery female and a wild male

text: Oncorhynchus mykiss


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a female progeny of a wild female and a hatchery male.

text: Oncorhynchus mykiss


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a male progeny of a wild female and a hatchery male.

text: Oncorhynchus mykiss


text: DDPSC

text: live

text: Generic

text: 60 male and female O. mykiss (steelhead trout) fish were sampled for transcriptome sequencing. This sample is a female progeny of of a wild female and a hatchery male.

text: Oncorhynchus mykiss


text: small

characteristic: Body Size of adults

text: University of Georgia

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: nestling from Cordova, Alaska

text: Cordova, Alaska, mainland

characteristic: location

text: Melospiza melodia

text: nestling + fledgling

characteristic: state

text: Cordova samples KSW5318+KSW 5319, MID-13


JJW 189+JJW 220

text: larger

text: University of Georgia

text: live

text: Generic

text: Generic

text: egg/embryofrom Attu Alaska, RNA extracted separately, normalized, and combined prior to library construction

text: Attu, Alaska, Aleutian

text: Melospiza melodia

text: egg/embryo +nestling

text: Attu song sparrow egg/embryo + nestlings samples JJW 189+JJW 220


text: UMCG Groningen

text: live

text: Generic

text: Pcdh1 5'RACE from exon m1 (Invitrogen, RLM-RACE) was performed on total RNA isolated from whole lung of BALB/c mice. PCR-products were cloned in pCR-TOPO 4.1, and sequenced using M13Rev primer.

text: lung

characteristic: organ

text: Mus musculus

text: BALB/c

characteristic: strain

text: whole lung homogenate

characteristic: tissue-type

text: Mus musculus Pcdh1 5'RACE


characteristic: External Id

text: UMCG Groningen

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Pcdh1 3'RACE from exon 3 of isoform 2 (Invitrogen, RLM-RACE) was performed on total RNA isolated from whole lung of BALB/c mice. PCR-products were cloned in pCR-TOPO 4.1, and sequenced using M13Rev primer.

text: lung

text: Mus musculus

text: BALB/c

text: whole lung homogenate

text: Mus musculus Pcdh1 3'RACE isoform 2


text: UMCG Groningen

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Pcdh1 5'RACE from exon 3 (Invitrogen, RLM-RACE) was performed on total RNA isolated from lungs of BALB/c mice exposed to house-dust mite. PCR-products were cloned in pCR-TOPO 2.1, and sequenced using M13Rev primer.

text: lung

text: Mus musculus

text: BALB/c

text: whole lung homogenate

text: Mus musculus Pcdh1 5'RACE isoform 2


JJW 251 + JJW 351

text: larger

text: University of Georgia

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: 2 fledgling individuals from Adak Island Alaska; RNA extracted separately, normalized, and combined prior to library preparation

text: Adak Island, Alaska, Aleutian

text: Melospiza melodia

text: JJW 351+ JJW 251

characteristic: sample id

text: fledgling

text: Adak Island fledglings samples JJW 251 + JJW 351


text: Computational Biology, Plant Industry, CSIRO

text: live

text: Generic

characteristic: SRA accession

text: 2 week old seedling

characteristic: developmental stage

characteristic: ecotype

text: Arabidopsis thaliana

characteristic: organism

text: Mock treated whole plants

text: whole plants

characteristic: tissue

characteristic: title

text: mock

characteristic: treatment


text: live

text: Generic

text: 3 week old seedling

text: Arabidopsis thaliana

text: Mock treated whole plants

text: whole plants

text: mock


text: live

text: Generic

text: 2 week old seedling

text: Arabidopsis thaliana

text: Fusarium oxysporum infected whole plants

text: whole plants

text: Fusarium oxysporum infected


text: live

text: Generic

text: 3 week old seedling

text: Arabidopsis thaliana

text: whole plants

text: Fusarium oxysporum infected


PRJNA52007.KZN 1435

text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis KZN 1435

text: KZN 1435

characteristic: sample name

text: KZN MDR

characteristic: strain

text: Generic sample from Mycobacterium tuberculosis KZN 1435


characteristic: External Id

text: Pacific Biosciences

characteristic: INSDC center name

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Samples of spontaneously passed stool from two patients who had received a clinical diagnosis of cholera were cultured. Both patients received standard medical treatment for cholera, as appropriate to their clinical conditions. Bacterial isolates (H1 and H2) were shipped to the United States, with the use of an import license for this purpose (2010-10-108) that was provided through the Centers for Disease Control and Prevention (CDC). Isolates were identified as V. cholerae and were determined to be susceptible to tetracycline and erythromycin but resistant to trimethoprim-sulfamethoxazole and nalidixic acid.

characteristic: description

characteristic: isolate

text: Vibrio cholerae

text: H1 (Haiti, 2010)


text: Pacific Biosciences

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Generic

text: Clinical isolate, strain N16961, from 1971 cholera outbreak in Bangladesh. Cultured on thiosulfate-citrate-bile-sucrose (TCBS) agar, and subsequently subcultured and stabbed in Amies clear transport medium.

text: Vibrio cholerae

text: N5 (Bangladesh, 1971)


Branchiostoma belcheri

text: State Key Laboratory Of Biocontrol - Sun Yet-Sen University

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Branchiostoma belcheri

text: a Chinese amphioxus BAC library


name: The transcriptome of Penicillium decumbens strain 114-2 in glucose medium

text: Institute of Plant Physiology and Ecology, China

text: live

text: Generic

text: Penicillium oxalicum 114-2

characteristic: organism


name: The transcriptome of Penicillium decumbens strain 114-2 in cellulose-wheat bran medium

text: live

text: Generic

text: Penicillium oxalicum 114-2

characteristic: title


name: The transcriptome of Penicillium decumbens strain 114-2 in cellulose medium

text: live

text: Generic

text: Penicillium oxalicum 114-2


name: The transcriptome of Penicillium decumbens strain JU-A10-T in glucose medium

text: live

text: Generic

text: Penicillium oxalicum JU-A10-T


name: The transcriptome of Penicillium decumbens strain JU-A10-T in cellulose-wheat bran medium

text: live

text: Generic

text: Penicillium oxalicum JU-A10-T


name: The transcriptome of Penicillium decumbens strain JU-A10-T in cellulose medium

text: live

text: Generic

text: Penicillium oxalicum JU-A10-T


text: Bendelac, Committee on Immunology, University of Chicago

text: live

text: Generic

text: thymocytes from anti-TCRb injected mice

characteristic: cell type

text: anti-EGR2 (Krox-20)

characteristic: chip antibody

text: Covance

characteristic: chip antibody vendor

text: Mus musculus

text: anti-TCRb injected_thymocytes_EGR2_ChIP


characteristic: External Id

text: live

text: Generic

text: NKT cells were isolated from Va14tg mice

text: anti-EGR2 (Krox-20)

text: Covance

text: Mus musculus

characteristic: strain


characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: input DNA

text: Input


text: live

text: Generic

text: IgG

text: Abcam

text: Mus musculus

text: IgG


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: V6.5 embryonic stem cells

characteristic: cell line

text: CoREST

characteristic: chip antibody catalog number

text: Abcam

characteristic: chip antibody manufacturer

text: Mus musculus

text: Embryonic stem cells


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: V6.5 embryonic stem cells

text: Abcam

characteristic: concentration

text: DMSO

characteristic: drug

text: Mus musculus

characteristic: replicate

text: Embryonic stem cells

characteristic: time

text: H3K27ac rep1


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: V6.5 embryonic stem cells

text: Abcam

text: DMSO

text: Mus musculus

characteristic: organism

text: Embryonic stem cells

text: H3K27ac rep2


characteristic: External Id

text: live

text: Generic

text: V6.5 embryonic stem cells

characteristic: chip antibody

text: Abcam

text: DMSO

text: Mus musculus

text: Embryonic stem cells

text: H3K4me1 rep1

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: V6.5 embryonic stem cells

characteristic: cell line

characteristic: chip antibody catalog number

text: Abcam

text: DMSO

text: Mus musculus

text: Embryonic stem cells

text: H3K4me1 rep2


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: V6.5 embryonic stem cells

text: Abcam

characteristic: chip antibody manufacturer

text: Mus musculus

text: Embryonic stem cells

text: H3K27ac C646 rep1


text: live

text: Generic

text: V6.5 embryonic stem cells

text: Abcam

characteristic: concentration

characteristic: drug

text: Mus musculus

characteristic: replicate

text: Embryonic stem cells

text: H3K27ac C646 rep2


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: V6.5 embryonic stem cells

text: Abcam

text: Mus musculus

text: Embryonic stem cells

characteristic: time

text: H3K4me1 C646 rep1


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: V6.5 embryonic stem cells

text: Abcam

text: Mus musculus

text: Embryonic stem cells

text: H3K4me1 C646 rep2


India WSSV resistant animals

characteristic: External Id

text: Nofima

text: live

text: Generic

text: About 200 tiger shrimp that survived a severe WSSV infection during pond culture at Bapatla (15* 54' N &amp; 80* 30' E) in Andhra Pradesh were brought to the Central Instiute Brackishwater Aquaculture, Chennai and maintained. From this group, which survived for a further four months, three shrimp were sampled for the study. Shrimp were dissected under sterile conditions and fresh tissue samples (hepatopancreas, muscle, nervous tissue, intestinal tract, heart, gonad, gill, pleopod and lymphoid organ) were collected and stored in 1.5 ml microtubes. Microtubes were filled with RNAlater (Qiagen) to immerse the entire tissue. Subsequently, tubes were topped up to the brim with RNAlater, capped and stored at room temperature for two hours, 4 oC overnight and -80 oC until further use. RNA was extracted (TRIzol® Plus RNA Purification, Invitrogen) according to manufacturer’s instructions. Tissue was ground in liquid nitrogen and 1.5 ml of TRIzol was added. RNA was further purified by chloroform extraction followed by precipitation using isopropanol and one wash with 70% ethanol. RNA was resuspended in 25 µl of RNase-free water. Only samples with optimal purity (OD260/280 &gt;1.8 and &lt;2.2; OD260/230&gt;1.0 and &lt;2.4) and concentration (&gt;50 ng/µl and &lt;2500 ng/µl), estimated using UV spectrophotometry (Nanodrop) and capillary electrophoresis (Agilent Bioanalyser), were utilized for sequencing. Samples were prepared using the Illumina protocol outlined in “Preparing Samples for Sequencing of mRNA” (Part# 1004898 Rev. A September 2008).

characteristic: description

text: Penaeus monodon

characteristic: organism

text: India WSSV resistant animals


India Andaman Island animals

text: Nofima

characteristic: INSDC center name

text: live

text: Generic

text: Three individuals from Andamans: 11° 40' N &amp; 92° 45' Shrimp were dissected under sterile conditions and fresh tissue samples (hepatopancreas, muscle, nervous tissue, intestinal tract, heart, gonad, gill, pleopod and lymphoid organ) were collected and stored in 1.5 ml microtubes. Microtubes were filled with RNAlater (Qiagen) to immerse the entire tissue. Subsequently, tubes were topped up to the brim with RNAlater, capped and stored at room temperature for two hours, 4 oC overnight and -80 oC until further use. RNA was extracted (TRIzol® Plus RNA Purification, Invitrogen) according to manufacturer’s instructions. Tissue was ground in liquid nitrogen and 1.5 ml of TRIzol was added. RNA was further purified by chloroform extraction followed by precipitation using isopropanol and one wash with 70% ethanol. RNA was resuspended in 25 µl of RNase-free water. Only samples with optimal purity (OD260/280 &gt;1.8 and &lt;2.2; OD260/230&gt;1.0 and &lt;2.4) and concentration (&gt;50 ng/µl and &lt;2500 ng/µl), estimated using UV spectrophotometry (Nanodrop) and capillary electrophoresis (Agilent Bioanalyser), were utilized for sequencing. Samples were prepared using the Illumina protocol outlined in “Preparing Samples for Sequencing of mRNA” (Part# 1004898 Rev. A September 2008).

text: Penaeus monodon

text: India Andaman Island animals

characteristic: title


text: Armstrong Lab, Pediatric Oncology, Dana-Farber Cancer Institute

characteristic: INSDC first public

text: live

text: Generic

text: 5-FU treated BM cells transduced with Flag-tagged MLL-AF9

characteristic: cell origin

characteristic: chip antibody

text: Mus musculus

text: MLL-AF9 transfromed blasts

characteristic: strain


East coast animals

text: Nofima

characteristic: INSDC last update

text: live

text: Generic

text: Two individuals from Chennai: 13° 04' N &amp; 80° 17' E; two from Tuticorin: 8° 48' N &amp; 78° 11' E; and three from Vishakhapatnam: 17° 44' N &amp; 83° 23' E. Shrimp were dissected under sterile conditions and fresh tissue samples (hepatopancreas, muscle, nervous tissue, intestinal tract, heart, gonad, gill, pleopod and lymphoid organ) were collected and stored in 1.5 ml microtubes. Microtubes were filled with RNAlater (Qiagen) to immerse the entire tissue. Subsequently, tubes were topped up to the brim with RNAlater, capped and stored at room temperature for two hours, 4 oC overnight and -80 oC until further use. RNA was extracted (TRIzol® Plus RNA Purification, Invitrogen) according to manufacturer’s instructions. Tissue was ground in liquid nitrogen and 1.5 ml of TRIzol was added. RNA was further purified by chloroform extraction followed by precipitation using isopropanol and one wash with 70% ethanol. RNA was resuspended in 25 µl of RNase-free water. Only samples with optimal purity (OD260/280 &gt;1.8 and &lt;2.2; OD260/230&gt;1.0 and &lt;2.4) and concentration (&gt;50 ng/µl and &lt;2500 ng/µl), estimated using UV spectrophotometry (Nanodrop) and capillary electrophoresis (Agilent Bioanalyser), were utilized for sequencing. Samples were prepared using the Illumina protocol outlined in “Preparing Samples for Sequencing of mRNA” (Part# 1004898 Rev. A September 2008).

text: Penaeus monodon

text: East coast animals


text: NIH Intramural Sequencing Center

text: live

text: Generic

text: Homo sapiens

text: BC1 iPSC line derived from CD34positive cells with pEB-C5 episomal vector


text: NIH Intramural Sequencing Center

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: CD34 positive B cells

characteristic: cell type

text: Homo sapiens

text: blood

characteristic: tissue type

text: CD34 positive parent cells used to create BC1 and BCT1 iPSC cell lines


MSC

text: NIH Intramural Sequencing Center

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: mesenchymal

text: Homo sapiens

text: Mesenchymal stem cells used to create E1 with episomal vectors


text: NIH Intramural Sequencing Center

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

characteristic: cell line

text: iPCS; induced pleuripotent stem cell

text: induced with pEB-C5 and pEB-Tg episomal vectors

text: Homo sapiens

text: BCT1 iPSC cell line derived from CD34positive cells using pEB-C5 and pEB-Tg episomal vectors


characteristic: External Id

text: NIH Intramural Sequencing Center

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: E1 iPSC stem cells derived from MSCs using episomal vectors


text: DBI, Plant and Soil Sciences, University of Delaware

characteristic: INSDC center name

text: live

text: Generic

characteristic: ecotype

text: rdr2 mutant

characteristic: genotype/variation

text: Arabidopsis thaliana

characteristic: organism

text: Mixed stage inflorescence tissue


characteristic: INSDC first public

text: live

text: Generic

text: nrpd1a-4 mutant (PolIV mutant)

text: Arabidopsis thaliana

text: Mixed stage inflorescence tissue

text: nrpd1 rdr2_sRNA

characteristic: title


characteristic: INSDC last update

text: live

text: Generic

text: wild type Col-0 plant

text: Arabidopsis thaliana

text: Mixed stage inflorescence tissue

text: WT (Col-0)_sRNA


text: Department of Molecular Biology (274), Radboud University

text: live

text: Generic

text: primary monocyte

characteristic: chip antibody

text: Diagenode

characteristic: chip antibody manufacturer

text: Untreated cultured in RPMI till day7

characteristic: growth protocol

text: Homo sapiens

text: Antibody H3K4me3(Diagenode, Cat No. pAb-003-050, Lot No. A.3152-001P)

characteristic: sample type

text: Monocytes

text: H3K4me3 RPMI first ChIPseq


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary monocyte

characteristic: cell type

text: Diagenode

text: 24hrs Beta glucan treated and than cultured in RPMI till day7

text: Homo sapiens

text: Monocytes

text: H3K4me3 BG first ChIPseq


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: primary monocyte

text: Diagenode

text: Untreated cultured in RPMI till day7

text: Homo sapiens

text: Monocytes

text: H3K4me3 RPMI duplo ChIPseq


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: primary monocyte

text: Diagenode

text: Homo sapiens

text: Monocytes

text: H3K4me3 BG duplo ChIPseq


characteristic: INSDC center name

text: live

text: Generic

text: primary monocyte

text: Millipore

text: Untreated cultured in RPMI till day 7

text: Homo sapiens

text: Antibody H3K27me3(Millipore, Cat No. 07-449, Lot DAM: 1588246)

text: Monocytes

text: H3K27me3 RPMI ChIPseq


text: live

text: Generic

text: primary monocyte

text: Millipore

text: Homo sapiens

text: Monocytes

text: H3K27me3 BG ChIPseq


text: live

text: Generic

text: primary monocyte

text: Untreated cultured in RPMI till day 7

text: Homo sapiens

text: Total RNA isolated from untreated Monocytes at day7

text: Monocytes

text: Strand specific RPMI RNAseq


text: live

text: Generic

text: primary monocyte

text: Homo sapiens

text: Total RNA isolated from 24 hrs beta glucan treated Monocytes at day7

text: Monocytes

text: Strand specific BG RNAseq


text: live

text: Generic

text: primary monocyte

text: Untreated cultured in RPMI till day7

text: Homo sapiens

text: Monocytes

text: Strand specific RPMI duplo RNAseq


text: live

text: Generic

text: primary monocyte

text: Homo sapiens

text: Monocytes

text: Strand specific BG duplo RNAseq


text: Shilatifard, Stowers Institute for Medical Research

text: live

text: Generic

characteristic: cell line

text: human embryonic kidney cells

text: Pol II (N20)

text: Santa Cruz Biotechnology.

characteristic: chip antibody vendor

text: Homo sapiens

text: Human Embryonic Kidney Cell 293T


text: UCLA

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: Glioblastoma

text: control siRNA

characteristic: treatment


text: UCLA

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: Glioblastoma

characteristic: title

text: ADAR1 siRNA


text: Integrative Genomics of Ageing group, Functional and Comparative Genomics, University of Liverpool

text: live

text: Generic

text: 6 month (young)

characteristic: age

text: male

characteristic: gender

text: Rattus norvegicus

text: cerebral cortex_young

text: BN rats (Substrain BN/SsNOlaHSD)

characteristic: strain

text: cerebral cortex

characteristic: tissue

text: p1 - 6 month male


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 6 month (young)

text: male

text: Rattus norvegicus

text: cerebral cortex_young

text: BN rats (Substrain BN/SsNOlaHSD)

text: cerebral cortex

text: p2 - 6 month male


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 6 month (young)

text: male

text: Rattus norvegicus

text: cerebral cortex_young

text: BN rats (Substrain BN/SsNOlaHSD)

text: cerebral cortex

text: p3 - 6 month male


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: 28 month (old)

text: male

text: Rattus norvegicus

text: cerebral cortex_old

text: BN rats (Substrain BN/SsNOlaHSD)

text: cerebral cortex

text: p4 - 28 month male


characteristic: INSDC center name

text: live

text: Generic

text: 28 month (old)

text: male

text: Rattus norvegicus

text: cerebral cortex_old

text: BN rats (Substrain BN/SsNOlaHSD)

text: cerebral cortex

text: p5 - 28 month male


text: live

text: Generic

text: 28 month (old)

text: male

text: Rattus norvegicus

text: cerebral cortex_old

text: BN rats (Substrain BN/SsNOlaHSD)

text: cerebral cortex

text: p6 - 28 month male


text: live

text: Generic

text: 12 month (middle age)

text: male

text: Rattus norvegicus

text: cerebral cortex_middle age

text: BN rats (Substrain BN/SsNOlaHSD)

text: cerebral cortex

text: p7 - 12 month male


text: live

text: Generic

text: 12 month (middle age)

text: male

text: Rattus norvegicus

text: cerebral cortex_middle age

text: BN rats (Substrain BN/SsNOlaHSD)

text: cerebral cortex

text: p8 - 12 month male


text: live

text: Generic

text: 12 month (middle age)

text: male

text: Rattus norvegicus

text: cerebral cortex_middle age

text: BN rats (Substrain BN/SsNOlaHSD)

text: cerebral cortex

text: p9 - 12 month male


text: Holloway, Bioinformatics Core, Gladstone Institute of Cardiovascular Disease (at UC San Francisco)

text: live

text: Generic

text: Adult

characteristic: development stage

text: Ezh2-deficient mutant

characteristic: genetic variation

text: Mus musculus

text: Ezh2-deficient_heart_right ventricle

text: Mixed background of C57BL/6

text: Heart, Right ventricle

text: RV_Mu1 (Mutant sample 1)


characteristic: INSDC first public

text: live

text: Generic

text: Adult

text: Ezh2-deficient mutant

text: Mus musculus

characteristic: organism

text: Ezh2-deficient_heart_right ventricle

text: Mixed background of C57BL/6

text: Heart, Right ventricle

text: RV_Mu3 (Mutant sample 3)


characteristic: INSDC last update

text: live

text: Generic

text: Adult

text: Wildtype

text: Mus musculus

text: wt_heart_right ventricle

text: Mixed background of C57BL/6

text: Heart, Right ventricle

text: RV_Wt1 (Wildtype sample 1)


text: live

text: Generic

text: Adult

text: Wildtype

text: Mus musculus

text: wt_heart_right ventricle

text: Mixed background of C57BL/6

text: Heart, Right ventricle

text: RV_Wt2 (Wildtype sample 2)

characteristic: title


Illumina junctions iTAG

text: VIB-UGent

text: live

text: Generic

text: For the whole tomato genome annotation, anonymous RNA-seq data was used to support the gene prediction. The provided data set only contains those reads spanning introns, confirming the iTAG gene models.

characteristic: description

text: Solanum lycopersicum

text: Anonymous Spliced Illumina reads for gene prediction purposes


text: Zeitlinger Lab, Stowers Institute for Medical Research

text: live

text: Generic

text: neuron

characteristic: cell type

text: P{w+mW.hs=GawB}elavC155,P{w+mC=UAS-CD8::GFP.L}LL4, P{ry+t7.2=hsFLP}1, w*

characteristic: genetic background

text: Drosophila melanogaster

text: neurons FAC sorted from dissociated embryos

text: 10 to 12h AEL

characteristic: time point

text: neuron

text: neuron 10-12h replicate 1


characteristic: INSDC secondary accession

text: live

text: Generic

text: neuron

text: Drosophila melanogaster

text: 14 to 17h AEL

text: neuron

characteristic: tissue

text: neuron 14-17h replicate 1


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: neuron

text: Drosophila melanogaster

text: 14 to 17h AEL

text: neuron

text: neuron 14-17h replicate 2


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission package

text: P{w+mC=UAS-mCD8::GFP.L}LL6, P{w+mC=Dmef2-GAL4}

text: Drosophila melanogaster

text: muscle FAC sorted from dissociated embryos

text: 06 to 08h AEL

text: muscle

text: muscle 6-8h replicate 1


characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Drosophila melanogaster

text: 06 to 08h AEL

text: muscle

text: muscle 6-8h replicate 2


text: live

text: Generic

text: Drosophila melanogaster

text: 08 to 10h AEL

text: muscle

text: muscle 8-10h replicate 1


text: live

text: Generic

text: Drosophila melanogaster

text: 08 to 10h AEL

text: muscle

text: muscle 8-10h replicate 2


text: live

text: Generic

text: Drosophila melanogaster

text: 10 to 12h AEL

text: muscle

text: muscle 10-12h replicate 1


text: live

text: Generic

text: Drosophila melanogaster

text: 10 to 12h AEL

text: muscle

text: muscle 10-12h repliace 2


text: live

text: Generic

text: Drosophila melanogaster

text: 14 to 17h AEL

text: muscle

text: muscle 14-17h replicate 1


text: live

text: Generic

text: Drosophila melanogaster

text: 14 to 17h AEL

text: muscle

text: muscle 14-17h replicate 2


text: live

text: Generic

text: embryos were collected from Toll10b/+ females obtained from a balanced stock (Toll10b/TM3, Sb, Ser and Toll10b/OR60)

text: Drosophila melanogaster

text: Toll10b mutant

text: 02 to 04h AEL

text: whole-embryo

text: toll10b 2-4h replicate 1


text: live

text: Generic

text: Drosophila melanogaster

text: Toll10b mutant

text: 02 to 04h AEL

text: whole-embryo

text: toll10b 2-4h replicate 2


text: live

text: Generic

text: Toll10b mutant

characteristic: genotype

text: Drosophila melanogaster

text: Toll10b mutant

text: 02 to 04h AEL

text: Toll10b mutant MNase-seq


Quarter Horse

text: Texas A&M University

characteristic: INSDC first public

text: live

text: Generic

text: Equus caballus

text: Whole-Genome Sequencing and Genetic Variant Analysis of a Quarter Horse Mare


text: State Key Laboratory of Microbial Technology, Shandong University

text: live

text: Generic

text: 2% (wt/vol) glucose

characteristic: medium

text: Penicillium decumbens

characteristic: organism

text: Fungal mycelia

characteristic: strain

text: 41 h

characteristic: time

text: 114-2_G DGE


characteristic: INSDC last update

text: live

text: Generic

text: 2% (wt/vol) cellulose

text: Penicillium decumbens

text: Fungal mycelia

text: first grown in 2% (wt/vol) glucose medium for 39 h and then transferred into 2% (wt/vol) cellulose medium for another 2-h growth

text: 114-2_C DGE

characteristic: title


text: live

text: Generic

text: 1% (wt/vol) cellulose plus 1% (wt/vol) wheat bran

text: Penicillium decumbens

text: Fungal mycelia

text: 41 h

text: 114-2_CW DGE


text: live

text: Generic

text: 2% (wt/vol) glucose

text: Penicillium decumbens

text: Fungal mycelia

text: 41 h

text: JU-A10-T_G DGE


text: live

text: Generic

text: 2% (wt/vol) cellulose

text: Penicillium decumbens

text: Fungal mycelia

text: JU-A10-T_C DGE


text: live

text: Generic

text: Penicillium decumbens

text: Fungal mycelia

text: 41 h

text: JU-A10-T_CW DGE


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: blood

characteristic: body site

text: BRU

text: blood

characteristic: histological type

text: Homo sapiens

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from blood of a human participant in the dbGaP study SLCO1B1 Variants and Methotrexate Clearance


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: blood

text: BRU

text: blood

text: Homo sapiens

text: Prospective Longitudinal Cohort

text: SLCO1B1 Variants and Methotrexate Clearance


name: Hzea cell line (HZAM1) Illumina paired end

text: The University of Queensland

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Samples containing 5x1E5 H. zea (HzAM1) cells (Mcintosh and Ignoffo, 1983), grown in shaker-flask suspension cultures using serum free insect medium (VPM3), were collected for total RNA extraction and DNA removal using the Qiagen RNAeasy extraction and on-column DNAse kit (Qiagen, Hilden, Germany).

characteristic: description

text: Helicoverpa zea

characteristic: organism

text: Transcriptome sequencing of and microarray development for a Helicoverpa zea cell line to investigate in vitro insect cell-baculovirus interactions

characteristic: title


text: Tsinghua University

text: live

text: Generic

text: bioreactor sludge metagenome


FEM

text: BMR Genomics srl

text: live

text: Generic

text: Bifidobacterium animalis subsp. lactis BS 01

text: BS 01

characteristic: strain

text: lactis

characteristic: subsp.


text: live

text: Generic

text: Pol II (8WG16, Covance)

characteristic: chip antibody

text: Covance

characteristic: chip antibody manufacturer

characteristic: genetic background

text: Drosophila melanogaster

text: 10 to 12h AEL

characteristic: time point

text: Pol II ChIP-seq from Drosophila neuronal cells, 8WG16 antibody, replicate 1


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Pol II (CTD48H, Millipore)

text: Millipore

text: Drosophila melanogaster

text: 06 to 08h AEL

text: Pol II ChIP-seq from 6-8 h Drosophila muscle cells, 4H8 antibody, replicate 1


text: Zeitlinger Lab, Stowers Institute for Medical Research

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: Pol II (CTD48H, Millipore)

text: Millipore

text: Drosophila melanogaster

text: 06 to 08h AEL

text: Pol II ChIP-seq from 6-8 h Drosophila muscle cells, 4H8 antibody, replicate 2


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Pol II (8WG16, Covance)

text: Covance

text: Drosophila melanogaster

text: 06 to 08h AEL

text: Pol II ChIP-seq from 6-8 h Drosophila muscle cells, 8WG16 antibody, replicate 1


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Pol II (8WG16, Covance)

text: Covance

text: P{w+mC=UAS-mCD8::GFP.L}LL6, P{w+mC=Dmef2-GAL4}

text: Drosophila melanogaster

text: 06 to 08h AEL

text: Pol II ChIP-seq from 6-8 h Drosophila muscle cells, 8WG16 antibody, replicate 2


text: live

text: Generic

characteristic: SRA accession

text: Pol II (CTD48H, Millipore)

text: Millipore

text: Drosophila melanogaster

text: muscle FAC sorted from dissociated embryos

text: 08 to 10h AEL

text: Pol II ChIP-seq from 8-10 h Drosophila muscle cells, 4H8 antibody, replicate 1


text: live

text: Generic

text: Pol II (CTD48H, Millipore)

text: Millipore

text: Drosophila melanogaster

characteristic: organism

text: 08 to 10h AEL

text: Pol II ChIP-seq from 8-10 h Drosophila muscle cells, 4H8 antibody, replicate 2


text: live

text: Generic

text: Pol II (8WG16, Covance)

text: Covance

text: Drosophila melanogaster

text: 08 to 10h AEL

text: Pol II ChIP-seq from 8-10 h Drosophila muscle cells, 8WG16 antibody, replicate 1

characteristic: title


text: live

text: Generic

text: Pol II (8WG16, Covance)

text: Covance

text: Drosophila melanogaster

text: 08 to 10h AEL

text: Pol II ChIP-seq from 8-10 h Drosophila muscle cells, 8WG16 antibody, replicate 2


text: live

text: Generic

text: Pol II (CTD48H, Millipore)

text: Millipore

text: Drosophila melanogaster

text: 10 to 12h AEL

text: Pol II ChIP-seq from 10-12 h Drosophila muscle cells, 4H8 antibody, replicate 1


text: live

text: Generic

text: Pol II (CTD48H, Millipore)

text: Millipore

text: Drosophila melanogaster

text: 10 to 12h AEL

text: Pol II ChIP-seq from 10-12 h Drosophila muscle cells, 4H8 antibody, replicate 2


text: live

text: Generic

text: Pol II (8WG16, Covance)

text: Covance

text: Drosophila melanogaster

text: 10 to 12h AEL

text: Pol II ChIP-seq from 10-12 h Drosophila muscle cells, 8WG16 antibody, replicate 1


text: live

text: Generic

text: Pol II (8WG16, Covance)

text: Covance

text: Drosophila melanogaster

text: 10 to 12h AEL

text: Pol II ChIP-seq from 10-12 h Drosophila muscle cells, 8WG16 antibody, replicate 2


text: live

text: Generic

text: Pol II (CTD48H, Millipore)

text: Millipore

text: Drosophila melanogaster

text: 14 to 17h AEL

text: Pol II ChIP-seq from 14-17 h Drosophila muscle cells, 4H8 antibody, replicate 2


text: live

text: Generic

text: Pol II (8WG16, Covance)

text: Covance

text: Drosophila melanogaster

text: 14 to 17h AEL

text: Pol II ChIP-seq from 14-17 h Drosophila muscle cells, 8WG16 antibody, replicate 1


text: live

text: Generic

text: Pol II (8WG16, Covance)

text: Covance

text: Drosophila melanogaster

text: 14 to 17h AEL

text: Pol II ChIP-seq from 14-17 h Drosophila muscle cells, 8WG16 antibody, replicate 2


text: Zeitlinger Lab, Stowers Institute for Medical Research

text: live

text: Generic

text: Pol II (8WG16, Covance)

text: Covance

text: embryos were collected from Toll10b/+ females obtained from a balanced stock (Toll10b/TM3, Sb, Ser and Toll10b/OR60)

text: Drosophila melanogaster

text: Toll10b mutant

text: 02 to 04h AEL

text: Pol II ChIP-seq from Drosophila Toll10b mutant embryos, 8WG16 antibody, replicate 1


text: live

text: Generic

text: Pol II (8WG16, Covance)

text: Covance

text: Drosophila melanogaster

text: Toll10b mutant

text: 02 to 04h AEL

text: Pol II ChIP-seq from Drosophila Toll10b mutant embryos, 8WG16 antibody, replicate 2


text: live

text: Generic

text: Pol II (CTD48H, Millipore)

text: Millipore

text: Oregon R

text: Drosophila melanogaster

text: Oregon R (wild type)

text: 02 to 04h AEL

text: Pol II ChIP-seq from 2-4 h wild type embryos, 4H8 antibody, replicate 1


text: live

text: Generic

text: H3K27me3 (ab6002, abcam)

text: abcam

text: P{w+mW.hs=GawB}elavC155,P{w+mC=UAS-CD8::GFP.L}LL4, P{ry+t7.2=hsFLP}1, w*

text: Drosophila melanogaster

text: neurons FAC sorted from dissociated embryos

text: 14 to 17h AEL

text: H3K27me3 ChIP-seq from Drosophila neuronal cells


text: live

text: Generic

text: H3K27me3 (ab6002, abcam)

text: abcam

text: P{w+mC=UAS-mCD8::GFP.L}LL6, P{w+mC=Dmef2-GAL4}

text: Drosophila melanogaster

text: muscle FAC sorted from dissociated embryos

text: 06 to 08h AEL

text: H3K27me3 ChIP-seq from Drosophila muscle cells 6-8h


text: live

text: Generic

text: H3K27me3 (ab6002, abcam)

text: abcam

text: Drosophila melanogaster

text: 08 to 10h AEL

text: H3K27me3 ChIP-seq from Drosophila muscle cells 8-10h


text: live

text: Generic

text: H3K27me3 (ab6002, abcam)

text: abcam

text: Drosophila melanogaster

text: 10 to 12h AEL

text: H3K27me3 ChIP-seq from Drosophila muscle cells 10-12h


text: live

text: Generic

text: H3K27me3 (ab6002, abcam)

text: abcam

text: Drosophila melanogaster

text: 14 to 17h AEL

text: H3K27me3 ChIP-seq from Drosophila muscle cells 14-17h


text: live

text: Generic

text: H3K27me3 (ab6002, abcam)

text: abcam

text: Drosophila melanogaster

text: Toll10b mutant

text: 02 to 04h AEL

text: H3K27me3 ChIP-seq from Drosophila muscle cells toll10b


text: live

text: Generic

text: H3K27me3 (ab6002, abcam)

text: abcam

text: Oregon R

text: Drosophila melanogaster

text: Oregon R (wild type)

text: 02 to 04h AEL

text: H3K27me3 ChIP-seq from 2-4 h wild type embryos


text: live

text: Generic

text: H3K27me3 (ab6002, abcam), Pol II (CTD4H8, Millipore)

characteristic: chip antibody 1

text: abcam

characteristic: chip antibody 1 manufacturer

text: Pol II (CTD4H8, Millipore)

characteristic: chip antibody 2

text: Millipore

characteristic: chip antibody 2 manufacturer

text: Oregon R

text: Drosophila melanogaster

text: Oregon R (wild type)

text: 02 to 04h AEL

text: H3K27me3-Pol II reChIP from 2-4 h wild type embryos


text: Zeitlinger Lab, Stowers Institute for Medical Research

text: live

text: Generic

text: H3K4me3 (ab8580, abcam)

characteristic: chip antibody

text: abcam

characteristic: chip antibody manufacturer

characteristic: genetic background

text: Drosophila melanogaster

text: 06 to 18h AEL

text: H3K4me3 ChIP-seq from Drosophila muscle cells


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Drosophila melanogaster

text: 10 to 12h AEL

characteristic: time point

text: Input DNA 10-12h elav


characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Drosophila melanogaster

text: 06 to 08h AEL

text: Input DNA 6-8h mef2 replicate 1


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: Drosophila melanogaster

text: 06 to 08h AEL

text: Input DNA 6-8h mef2 replicate 2


text: live

text: Generic

characteristic: SRA accession

text: Drosophila melanogaster

characteristic: organism

text: 06 to 08h AEL

text: Input DNA 6-8h mef2 replicate 3

characteristic: title


text: live

text: Generic

text: Drosophila melanogaster

text: 08 to 10h AEL

text: Input DNA 8-10h mef2 replicate 1


text: live

text: Generic

text: Drosophila melanogaster

text: 08 to 10h AEL

text: Input DNA 8-10h mef2 replicate 2


text: live

text: Generic

text: Drosophila melanogaster

text: 08 to 10h AEL

text: Input DNA 8-10h mef2 replicate 3


text: live

text: Generic

text: Drosophila melanogaster

text: 08 to 10h AEL

text: Input DNA 8-10h mef2 replicate 4


text: live

text: Generic

text: Drosophila melanogaster

text: 10 to 12h AEL

text: Input DNA 10-12h mef2 replicate 1


text: live

text: Generic

text: Drosophila melanogaster

text: 10 to 12h AEL

text: Input DNA 10-12h mef2 replicate 2


text: live

text: Generic

text: Drosophila melanogaster

text: 10 to 12h AEL

text: Input DNA 10-12h mef2 replicate 3


text: live

text: Generic

text: Drosophila melanogaster

text: 10 to 12h AEL

text: Input DNA 10-12h mef2 replicate 4


text: live

text: Generic

text: Drosophila melanogaster

text: 14 to 17h AEL

text: Input DNA 14-17h mef2 replicate 1


text: live

text: Generic

text: Drosophila melanogaster

text: 14 to 17h AEL

text: Input DNA 14-17h mef2 replicate 2


text: live

text: Generic

text: Drosophila melanogaster

text: 14 to 17h AEL

text: Input DNA 14-17h mef2 replicate 3


text: live

text: Generic

text: embryos were collected from Toll10b/+ females obtained from a balanced stock (Toll10b/TM3, Sb, Ser and Toll10b/OR60)

text: Drosophila melanogaster

text: Toll10b mutant

text: 02 to 04h AEL

text: Input DNA toll10b


text: live

text: Generic

text: Oregon R

text: Drosophila melanogaster

text: Oregon R (wild-type)

text: 02 to 04h AEL

text: Input DNA 2-4h oregon R


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Plasmodium falciparum

text: Plasmodium falciparum 701.112

characteristic: sample name

text: Generic sample from Plasmodium falciparum


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 669.415


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 685.1413


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 709.115


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 303.828

text: Plasmodium falciparum


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 394.1875


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 713.313


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 404.1697

characteristic: strain


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 257.953


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 355.1570


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 662.441


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 735.1533


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 452.368


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 347.1192


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 421.1647


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 288.978


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 423.1631


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 690.281


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 242.204


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 728.320


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 292.782


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 384.1704


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 293.763


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 430.1646


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 337.1072


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 341.736


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 282.1102


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 676.1445


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 424.474


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 732.167


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 309.1114


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 294.751


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 647.960


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 699.405


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 382.1698


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 682.473


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 373.1848


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 684.204


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVQ-173


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-142


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVY-240


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVC-144


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVF-198


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVO-126


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVD-395


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVF-143


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVL-131


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVU-378


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVL-303


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVE-393


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVG-395


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVF-370


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-256


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVS-212


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVG-198


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVO-143


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVQ-125


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVO-264


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVY-281


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVC-432


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVQ-372


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVQ-385


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVY-192


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVO-095


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVY-114


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-387


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVS-313


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVP-313


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVM-173


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-134


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVM-092


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVU-435


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVO-378


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVP-432


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVQ-281


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVF-402


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVO-114


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVF-392


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVO-418


text: School of Horticulture, Anhui Agricultural University

text: live

text: Generic

text: Fagopyrum esculentum Moench.

characteristic: authority

text: buckwheat seed developmental stage 1

characteristic: development stage

text: Fagopyrum esculentum

text: RNAs from buckwheat seed developmental stage 1


characteristic: External Id

text: live

text: Generic

text: Fagopyrum esculentum Moench.

text: buckwheat seed developmental stage 2

text: Fagopyrum esculentum

text: RNAs from buckwheat seed developmental stage 2


characteristic: INSDC center name

text: live

text: Generic

text: Fagopyrum esculentum Moench.

text: buckwheat seed developmental stage 3

text: Fagopyrum esculentum

text: RNAs from buckwheat seed developmental stage 3


text: live

text: Generic

text: Fagopyrum esculentum Moench.

text: buckwheat seed developmental stage 4

text: Fagopyrum esculentum

text: RNAs from buckwheat seed developmental stage 4


text: live

text: Generic

text: Fagopyrum esculentum Moench.

text: buckwheat seed developmental stage 5

text: Fagopyrum esculentum

text: RNAs from buckwheat seed developmental stage 5


text: Weill Cornell Medical College

text: live

text: Generic

characteristic: cell line

characteristic: chip antibody

text: Homo sapiens

text: Diffuse Large B-cell Lymophoma


text: Weill Cornell Medical College

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: Human tonsilar naïve B cells (IgD+)

characteristic: cell type

text: Homo sapiens

text: Human tonsilar naïve B cells


text: Weill Cornell Medical College

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: Human tonsilar germinal center B cells (CD77+)

text: Homo sapiens

text: Human tonsilar germinal center B cells


text: Animal Genomics Laboratory, School of Agriculture, Food Science and Veterinary Medicine, University College Dublin

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: animalid

text: Cow

characteristic: animaltype

text: Bos taurus

characteristic: organism

text: Granulosa cells of dominant follicle

text: Selected

characteristic: stage

text: Granulosa

characteristic: tissue


characteristic: External Id

text: live

text: Generic

text: Heifer

text: Bos taurus

text: Granulosa cells of dominant follicle

text: Selected

text: Granulosa

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: Cow

text: Bos taurus

text: Granulosa cells of dominant follicle

text: Differentiated

text: Granulosa


text: live

text: Generic

text: Heifer

text: Bos taurus

text: Granulosa cells of dominant follicle

text: Differentiated

text: Granulosa


text: live

text: Generic

text: Cow

text: Bos taurus

text: Granulosa cells of dominant follicle

text: Luteinized

text: Granulosa


text: live

text: Generic

text: Heifer

text: Bos taurus

text: Granulosa cells of dominant follicle

text: Luteinized

text: Granulosa


text: live

text: Generic

text: Cow

text: Bos taurus

text: Theca cells of dominant follicle

text: Selected

text: Theca


text: live

text: Generic

text: Heifer

text: Bos taurus

text: Theca cells of dominant follicle

text: Selected

text: Theca


text: live

text: Generic

text: Cow

text: Bos taurus

text: Theca cells of dominant follicle

text: Differentiated

text: Theca


text: live

text: Generic

text: Heifer

text: Bos taurus

text: Theca cells of dominant follicle

text: Differentiated

text: Theca


text: live

text: Generic

text: Cow

text: Bos taurus

text: Theca cells of dominant follicle

text: Luteinized

text: Theca


text: live

text: Generic

text: Heifer

text: Bos taurus

text: Theca cells of dominant follicle

text: Luteinized

text: Theca


text: Jiming Jiang, UW-Madison

text: live

text: Generic

text: wild type

characteristic: genotype/variation

text: Arabidopsis thaliana

text: seedling

text: seedling


text: Jiming Jiang, UW-Madison

characteristic: INSDC first public

text: live

text: Generic

text: wild type

text: Arabidopsis thaliana

text: flower

text: flower


text: Jiming Jiang, UW-Madison

text: live

characteristic: INSDC status

text: Generic

text: Arabidopsis thaliana

text: seedling

text: seedling


text: Jiming Jiang, UW-Madison

text: live

text: Generic

text: Arabidopsis thaliana

text: flower

text: flower


text: Tu Lab, Biochemistry, Virginia Tech

text: live

text: Generic

text: larvae

characteristic: developmental stage

text: Aedes aegypti

text: larvae, Liverpool strain

text: Liverpool

characteristic: strain

text: larvae

text: larvae


text: Tu Lab, Biochemistry, Virginia Tech

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: pupae

text: Aedes aegypti

text: pupae, Liverpool strain

text: Liverpool

text: pupae

text: pupae


text: Tu Lab, Biochemistry, Virginia Tech

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 1-5 day old males

text: Aedes aegypti

text: adult males, Liverpool strain

text: Liverpool

text: whole organism

text: 1-5 day old males


text: Tu Lab, Biochemistry, Virginia Tech

text: live

text: Generic

characteristic: SRA accession

text: 0-1 day old females

text: Aedes aegypti

text: ovaries, Liverpool strain

text: Liverpool

text: ovaries

text: ovaries from 0-1 day old mosquitoes


text: Tu Lab, Biochemistry, Virginia Tech

text: live

text: Generic

text: 0-1 hr embryo

text: Aedes aegypti

text: embryo, Liverpool strain

text: Liverpool

text: embryo

text: 0-1 hr embryo


text: Tu Lab, Biochemistry, Virginia Tech

text: live

text: Generic

text: adult

text: Aedes aegypti

text: 24 hr post blood meal mosquitoes, Liverpool strain

text: Liverpool

text: ovaries

text: ovaries from 24 hr post blood fed mosquitoes

text: blood fed mosquitoes

characteristic: treatment


text: Tu Lab, Biochemistry, Virginia Tech

text: live

text: Generic

text: adult

text: Aedes aegypti

characteristic: organism

text: Liverpool

text: carcass w/o ovaries

text: carcass from 24 hr post blood fed mosquitoes (ovaries extirpated)

text: blood fed mosquitoes


PRJNA28331.Bergeyella zoohelcum

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Bergeyella zoohelcum CCUG 30536

text: Bergeyella zoohelcum

characteristic: sample name

text: CCUG 30536

text: Generic sample from Bergeyella zoohelcum CCUG 30536


characteristic: External Id

text: Genetics and Developmental Biology, University of Connecticut Health Center

text: live

text: Generic

text: Schmidtea mediterranea

text: Asexual strain of S. mediterranea, Irradiated

text: Asexual

text: Asexual Irradiated

text: Irradiated


text: live

text: Generic

text: Schmidtea mediterranea

text: Asexual strain of S. mediterranea, Non-irradiated

text: Asexual

text: Asexual Non-irradiated [single end]

characteristic: title

text: Non-irradiated


characteristic: INSDC center name

text: live

text: Generic

text: Schmidtea mediterranea

text: Asexual

text: Asexual Non-irradiated [paired end]

text: Non-irradiated


text: live

text: Generic

text: Schmidtea mediterranea

text: Sexual strain of S. mediterranea, Irradiated

text: Sexual

text: Sexual Irradiated

text: Irradiated


text: live

text: Generic

text: Schmidtea mediterranea

text: Sexual strain of S. mediterranea, Non-irradiated

text: Sexual

text: Sexual Non-irradiated [single end]

text: Non-irradiated


text: live

text: Generic

text: Schmidtea mediterranea

text: Sexual

text: Sexual Non-irradiated [paired end]

text: Non-irradiated


text: live

text: Generic

text: X1 neoblast

characteristic: cell type

text: Schmidtea mediterranea

text: Sexual strain of S. mediterranea, Non-irradiated, X1 FACS purified neoblast

text: Sexual

text: Sexual Non-irradiated, X1 FACS purified neoblast

text: Non-irradiated


characteristic: INSDC first public

text: live

text: Generic

text: Xins differentiated cells

text: Schmidtea mediterranea

text: Sexual strain of S. mediterranea, Non-irradiated, Xins FACS purified differentiated cells

text: Sexual

text: Sexual Non-irradiated, Xins FACS purified differentiated cells

text: Non-irradiated


text: live

characteristic: INSDC status

text: Generic

text: X2 neoblast

text: Schmidtea mediterranea

text: Sexual strain of S. mediterranea, Non-irradiated, X2 FACS purified neoblast

text: Sexual

text: Sexual Non-irradiated, X2 FACS purified neoblast

text: Non-irradiated


Klebsiella pneumonia strain cifa_HP1_20

text: Division of Fish Health Management, Central Institute of Freshwater Aquaculture Bhubaneswar-751002, Orissa. India

text: live

text: Generic

text: Klebsiella pneumoniae

text: Global Transcriptome Analysis of the Heat Shock Response of Klebsiella pneumonia strain cifa_HP1_20


Klebsiella pneumonia strain cifa_HP1_50

text: live

text: Generic

text: Klebsiella pneumoniae

text: Global Transcriptome Analysis of the Heat Shock Response of Klebsiella pneumonia strain cifa_HP1_50


text: Individual

text: live

text: Generic

text: A shotgun library was constructed from enriched bacteria isolated from the Chinese strain of PWN using the next-generation sequencing technology for diversity investigation and function analysis. A total of 78 Mb assembly metagenome (99,049 contigs) were derived from 2.91Gb of sequence. Taxonomic assignment was carried out with MEGANperformed basing based on the results of best matches of the contigs blastn against with nt nuclear database from NCBI.

characteristic: description

text: Bursaphelenchus xylophilus

text: bacterial symbionts of the pinewood nematode


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Aequorivita sublithincola DSM 14238

text: Aequorivita sublithincola DSM 14238

text: DSM 14238

characteristic: strain

text: Generic sample from Aequorivita sublithincola DSM 14238


characteristic: INSDC last update

text: live

text: Generic

text: Alistipes finegoldii DSM 17242

text: Methanolacinia petrolearia DSM 11571

text: DSM 17242

text: Generic sample from Methanoplanus petrolearius DSM 11571


characteristic: INSDC secondary accession

text: live

text: Generic

text: Bigelowiella natans CCMP621

text: Bigelowiella natans CCMP2755

text: Generic sample from Bigelowiella natans CCMP2755


text: HPA

text: live

text: Generic

characteristic: NCBI submission model

text: Organism=Escherichia coli O104:H4 str. H112180280 Mol_type=genomic DNA Strain=H112180280 Serovar=0104:H4 Isolation_source=stool sample from patient with hemolytic uremic syndrome (HUS) Host=Homo sapiens Country=United Kingdom Collection_date=May-2011

text: Outbreak reads


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: Rhinovirus A

text: Rhinovirus p1124_sR1007_2009


text: J. Craig Venter Institute

text: live

text: Generic

characteristic: SRA accession

text: Day 0 replicate 2 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Generic sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 1 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 3 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 1 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 2 Uninfected control Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 2Uninfected control Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 3Uninfected control Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 1 Uninfected control Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 2 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 3 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 1 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 2 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 3 Uninfected control Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 3 Uninfected control Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 1 Uninfected control Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 2 Uninfected control Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 3 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 1 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Generic sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 2 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 2 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 3 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 1 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 3 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 1 Uninfected control Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 2 Uninfected control Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 1 Uninfected control Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 3 Uninfected control Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 1 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 1 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 2 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 2 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 3 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 2 Uninfected control Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 1 Uninfected control Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 1 Uninfected control Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Generic sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 2 Uninfected control Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 2 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 2 Nasal Swab Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 3 Nasal Swab Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 1 Nasal Swab Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 1 Nasal Swab Sample for V3V5region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 1 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 2 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 3 Infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 1 Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 3 Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 2 Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 3 Nasal Wash Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 2 Nasal Swab Sample for V3V5region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 1 Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 3 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 2 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Generic sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 1 Nasal Swab Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 2 Nasal Swab Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 3 Nasal Swab Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 2 Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 2 replicate 1 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 2 Nasal Swab Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 1 Nasal Swab Sample for V3V5 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 3 Nasal Swab Sample for V1V3 region

text: Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: uninfected

text: Generic

text: Uninfected replicate 2 Nasal Wash

text: GSC:MIMARKS

characteristic: keywords

text: Mustela putorius furo

characteristic: replicate

text: nasal wash

characteristic: sample type

text: ferret nasal microbiome uninfected nasal wash


text: J. Craig Venter Institute

text: live

text: Generic

text: Uninfected replicate 1 Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

characteristic: organism


characteristic: External Id

text: Dervan, CCE, CalTech

text: live

text: Generic

characteristic: cell line

text: f-6 (Santa-Cruz)

characteristic: chip antibody

text: ChIP-seq

characteristic: experiment type

text: Homo sapiens

text: Input

characteristic: protocol

text: Lung cancer cell line

text: ChIP-seq Input


text: Dervan, CCE, CalTech

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: f-6 (Santa-Cruz)

text: ChIP-seq

text: Homo sapiens

text: TNFa induced

text: Lung cancer cell line

text: ChIP-seq TNFa induced Replicate 1

characteristic: title


text: Dervan, CCE, CalTech

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: f-6 (Santa-Cruz)

text: ChIP-seq

text: Homo sapiens

text: TNFa induced

text: Lung cancer cell line

text: ChIP-seq TNFa induced Replicate 2


text: Dervan, CCE, CalTech

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: RNA-seq

text: Homo sapiens

text: Non-induced

text: Lung cancer cell line

text: RNA-seq Non-induced Replicate 1


text: Dervan, CCE, CalTech

text: live

text: Generic

characteristic: SRA accession

text: RNA-seq

text: Homo sapiens

text: Non-induced

text: Lung cancer cell line

text: RNA-seq Non-induced Replicate 2


text: Dervan, CCE, CalTech

text: live

text: Generic

text: RNA-seq

text: Homo sapiens

text: Induced

text: Lung cancer cell line

text: RNA-seq Induced Replicate 1


text: Dervan, CCE, CalTech

text: live

text: Generic

text: RNA-seq

text: Homo sapiens

text: Induced

text: Lung cancer cell line

text: RNA-seq Induced Replicate 2


text: Dervan, CCE, CalTech

text: live

text: Generic

text: RNA-seq

text: Homo sapiens

text: Induced and PA-treated

text: Lung cancer cell line

text: RNA-seq Induced and PA-treated Replicate 1


text: Dervan, CCE, CalTech

text: live

text: Generic

text: RNA-seq

text: Homo sapiens

text: Induced and PA-treated

text: Lung cancer cell line

text: RNA-seq Induced and PA-treated Replicate 2


text: Dervan, CCE, CalTech

text: live

text: Generic

text: RNA-seq

text: Homo sapiens

text: Induced and PS1145-treated

text: Lung cancer cell line

text: RNA-seq Induced and PS1145-treated Replicate 1


text: Dervan, CCE, CalTech

text: live

text: Generic

text: RNA-seq

text: Homo sapiens

text: Induced and PS1145-treated

text: Lung cancer cell line

text: RNA-seq Induced and PS1145-treated Replicate 2


text: University of Kentucky

text: live

text: Generic

text: This sample includes the sequences of cDNA tags that are directed to the mRNA-poly(A) junction. These samples were prepared using RNA isolated from the leaves of Arabidopsis plants that were grown for 3-4 weeks in a climate-controlled growth room under long days (16 hr light). Sample preparation was as described in Wu et al. (Wu X, Liu M, Downie B, Liang C, Ji G, Li QQ, Hunt AG. Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation. Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12533-8.).

characteristic: description

text: Arabidopsis thaliana

text: Arabidopsis wild-type leaf poly(A) tags


text: University of Kentucky

text: live

text: Generic

text: This sample includes the sequences of cDNA tags that are directed to the mRNA-poly(A) junction. These samples were prepared using RNA isolated from the leaves of Arabidopsis plants that were grown for 2-3 weeks in a climate-controlled growth room under long days (16 hr light). Sample preparation was as described in Wu et al. (Wu X, Liu M, Downie B, Liang C, Ji G, Li QQ, Hunt AG. Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation. Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12533-8.).

text: Arabidopsis thaliana

text: Wild-type and oxt6 mutant poly(A) tags


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Rhinovirus A

characteristic: strain

text: Rhinovirus p1005_sR1471_2009


characteristic: External Id

text: University of Kentucky

text: live

text: Generic

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis oxt6 mutant poly(A) tags


text: live

text: Generic

text: Generic

text: Rhinovirus A

text: Rhinovirus p1130_sR2849_2008


text: University of Kentucky

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis wild-type and oxt6 mutant poly(A) tags


text: YALE UNIVERSITY

text: live

text: Generic

text: 5 months

characteristic: age

text: Adult

characteristic: developmental stage

text: Mus musculus

text: male

characteristic: sex

text: Brain

text: Brain

characteristic: tissue

text: Small RNAs from young mouse brain (5 months)


text: YALE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: 24-25 months

text: Adult

text: Mus musculus

text: male

text: Brain

text: Brain

text: Small RNAs from aged mouse brain (24-25 months)


text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Rhinovirus B

text: Rhinovirus p1038_sR152_2007

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Rhinovirus C

text: Rhinovirus p1009_s3787_1999


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: Rhinovirus C

text: Rhinovirus p1211_sR3055_2009


text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Rhinovirus A

text: Rhinovirus p1257_s2107_1999


text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Rhinovirus A

text: Rhinovirus p1014_sR2551_2008


text: HudsonAlpha Genome Sequencing Center

text: live

text: Generic

text: The library was constructed and clones can be obtained from Clemson University Genomics Institute http://www.genome.clemson.edu/

characteristic: description

text: Panicum virgatum

text: BstYI

text: BAC

characteristic: vector


characteristic: External Id

text: Morgridge Research Institute

text: live

text: Generic

text: Mus musculus

characteristic: organism

text: mouse tissue

characteristic: strain

characteristic: time course

text: hindfoot digit

text: Mouse digit 0hr


text: Morgridge Research Institute

text: live

text: Generic

text: Mus musculus

text: mouse tissue

text: hindfoot digit

characteristic: tissue

text: Mouse digit 3hr


text: Morgridge Research Institute

characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: mouse tissue

text: hindfoot digit

text: Mouse digit 6hr


text: Morgridge Research Institute

characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus

text: mouse tissue

text: hindfoot digit

text: Mouse digit 12hr


text: Morgridge Research Institute

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: mouse tissue

text: hindfoot digit

text: Mouse digit 1d


text: Morgridge Research Institute

text: live

text: Generic

text: Mus musculus

text: mouse tissue

text: hindfoot digit

text: Mouse digit 5d

characteristic: title


text: Morgridge Research Institute

characteristic: INSDC last update

text: live

text: Generic

text: Mus musculus

text: mouse tissue

text: hindfoot digit

text: Mouse digit 10d


text: Morgridge Research Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mus musculus

text: mouse tissue

text: hindfoot digit

text: Mouse digit 14d


text: Morgridge Research Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 0hr


text: Morgridge Research Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 3hr


text: Morgridge Research Institute

text: live

text: Generic

characteristic: SRA accession

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 6hr


text: Morgridge Research Institute

text: live

text: Generic

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 12hr


text: Morgridge Research Institute

text: live

text: Generic

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 1d


text: Morgridge Research Institute

text: live

text: Generic

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 3d


text: Morgridge Research Institute

text: live

text: Generic

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 5d


text: Morgridge Research Institute

text: live

text: Generic

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 7d


text: Morgridge Research Institute

text: live

text: Generic

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 10d


text: Morgridge Research Institute

text: live

text: Generic

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 14d


text: Morgridge Research Institute

text: live

text: Generic

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 21d


text: Morgridge Research Institute

text: live

text: Generic

text: Ambystoma mexicanum

text: axolotl juvenile blastema

text: blastema

text: Axolotl limb blastemal 28d


C303 metagenome

text: Biodiversity Research Center, Academia Sinica

text: live

text: Generic

text: metagenomes

text: C303 metagenome


C307 metagenome

text: live

text: Generic

text: metagenomes

text: C307 metagenome


C313 metagenome

text: live

text: Generic

text: metagenomes

text: C313 metagenome


C317 metagenome

text: live

text: Generic

text: metagenomes

text: C317 metagenome


C303 bacteria community

text: live

text: Generic

text: Bacteria 16S rRNA gene hypervariable region V1V2 tag-sequencing

text: Bacteria

text: C303 bacteria community


C307 bacteria community

text: live

text: Generic

text: Bacteria

text: C307 bacteria community


C313 bacteria community

text: live

text: Generic

text: Bacteria

text: C313 bacteria community


C317 bacteria community

text: live

text: Generic

text: Bacteria

text: C317 bacteria community


C303 archaea community

text: live

text: Generic

text: Archaea 16S rRNA gene hypervariable region V4 tag-sequencing

text: Archaea

text: C303 archaea community


C307 archaea community

text: live

text: Generic

text: Archaea

text: C307 archaea community


C313 archaea community

text: live

text: Generic

text: Archaea

text: C313 archaea community


C317 archaea community

text: live

text: Generic

text: Archaea

text: C317 archaea community


text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Rhinovirus B

text: Rhinovirus p1069_sR342_2007


text: live

text: Generic

text: Generic

text: Rhinovirus A

text: Rhinovirus p1044_sR114_2008


text: live

text: Generic

text: Generic

text: Rhinovirus C

text: Rhinovirus p1192_sR2962_2008


text: live

text: Generic

text: Generic

text: Rhinovirus A

text: Rhinovirus p1174_sR1233_2009


text: live

text: Generic

text: Generic

text: Rhinovirus C

text: Rhinovirus p1264_s3775_1999


text: live

text: Generic

text: Generic

text: Rhinovirus B

text: Rhinovirus p1159_sR2067_2009


text: live

text: Generic

text: Generic

text: Rhinovirus B

text: Rhinovirus p1052_sR2777_2008


text: HudsonAlpha Institute for Biotechnology

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: no shRNA expression

characteristic: shRNA expression

text: K562 cells with shRNA targeting EGR1 gene cultured with no doxycycline (uninduced - UI), rep1.

text: Puromycin

characteristic: treatment


characteristic: External Id

text: HudsonAlpha Institute for Biotechnology

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: expressing shRNA targeting EGR1

text: K562 cells with shRNA targeting EGR1 gene cultured with doxycycline for 72 hours (72 hr), rep1.

text: Puromycin, doxycycline


text: HudsonAlpha Institute for Biotechnology

text: live

text: Generic

text: Homo sapiens

text: no shRNA expression

text: K562 cells with shRNA targeting EGR1 gene cultured with no doxycycline (uninduced - UI), rep2.

text: Puromycin


text: HudsonAlpha Institute for Biotechnology

text: live

text: Generic

text: Homo sapiens

text: expressing shRNA targeting EGR1

text: K562 cells with shRNA targeting EGR1 gene cultured with doxycycline for 72 hours (72 hr), rep2.

text: Puromycin, doxycycline


text: HudsonAlpha Institute for Biotechnology

text: live

text: Generic

text: Homo sapiens

text: no shRNA expression

text: K562 cells with shRNA targeting ATF3 gene cultured with no doxycycline (uninduced - UI), rep1.

text: Puromycin


text: HudsonAlpha Institute for Biotechnology

text: live

text: Generic

text: Homo sapiens

text: expressing shRNA targeting ATF3

text: K562 cells with shRNA targeting ATF3 gene cultured with doxycycline for 24 hours (24 hr), rep1.

text: Puromycin, doxycycline


text: HudsonAlpha Institute for Biotechnology

text: live

text: Generic

text: Homo sapiens

text: no shRNA expression

text: K562 cells with shRNA targeting ATF3 gene cultured with no doxycycline (uninduced - UI), rep2.

text: Puromycin


text: HudsonAlpha Institute for Biotechnology

text: live

text: Generic

text: Homo sapiens

text: expressing shRNA targeting ATF3

text: K562 cells with shRNA targeting ATF3 gene cultured with doxycycline for 24 hours (24 hr), rep2.

text: Puromycin, doxycycline


text: Centers for Disease Control and Prevention

text: live

text: Generic

text: Neisseria meningitidis


Stromatolite Type1

text: University of Florida

text: live

text: Generic

text: Generic

text: Bahamas: Exuma Sound

characteristic: country

text: Stromatolites are laminated, carbonate build-ups formed by the metabolic activity of microbial mats and represent one of the oldest known microbial ecosystems on Earth

characteristic: description

text: GSC:MIMS

characteristic: keywords

text: microbial mat metagenome

characteristic: stromatolitic mat type

text: nonlithifying stromatolitic mat Type 1


Stromatolite Type3

text: University of Florida

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Bahamas: Exuma Sound

text: GSC:MIMS

text: microbial mat metagenome

text: lithifying stromatolitic mat Type 3


text: School of Life Sciences, Arizona State University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: 38 somite stage embryo

characteristic: developmental stage

text: Anolis carolinensis

text: Anolis carolinensis whole embryo, 38 somite pairs

text: whole embryo

characteristic: tissue

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 28 somite stage embryo

text: Anolis carolinensis

text: Anolis carolinensis whole embryo, 28 somite pairs

text: whole embryo


Anopheles merus mate-paired sequences

characteristic: External Id

text: Virginia Tech

text: live

text: Generic

text: Anopheles merus

text: Anopheles merus mate-paired sequences


Berlin - C167.4 F1 hybrid genomic DNA.

text: University of Florida

text: live

text: Generic

text: Isogenic strains of D. simulans (C167.4; BDSC 4736) and D. melanogaster (Berlin; BDSC 8522) were crossed to produce F1 hybrid progeny. One to one and a half day old adults were flash frozen in synchronized batches.DNA was extracted from bodies of a single pool of 20 individuals. DNA was extracted using the MasterPure DNA purification kit (Epicentre). The Genomic DNA Clean and Concentrator kit (Zymo Research) was used to isolate only high molecular weight DNA, following the manufacturer’s protocol.

text: Drosophila

characteristic: organism

text: Control DNA sequences for analysis of allelic imbalance in D. melanogaster - D. simulans hybrid head tissues


name: Nucleosome maps of vegetative D. discoideum

text: Pennsylvania State University

text: live

text: Generic

text: Dictyostelium discoideum AX4

text: Gene and nucleosome organization in Dictyostelium