text: the First Affiliated Hospital, School of Medicine, Zhejiang University

text: live

text: Generic

text: subject barcode(5'-3') pa10t1 CTAGACAGAC noncancerous tissue 10-15 cm away from tumor pa10t2 CTAGTACTCA noncancerous tissue 10-15 cm away from tumor pa10t3 CTATATGTCG noncancerous tissue 10-15 cm away from tumor pa10t4 CTATCGACAC noncancerous tissue 10-15 cm away from tumor pa10t5 CTATGTAGAG noncancerous tissue 10-15 cm away from tumor pa10t6 CTCACGTACA noncancerous tissue 10-15 cm away from tumor pa10t7 CTCGAGTCTC noncancerous tissue 10-15 cm away from tumor pa10t8 CTCGTCGAGA noncancerous tissue 10-15 cm away from tumor pa10t9 CTCTACAGCG noncancerous tissue 10-15 cm away from tumor pa10t10 CTGTCGTGCG noncancerous tissue 10-15 cm away from tumor pa10t11 CTGTGACGTG noncancerous tissue 10-15 cm away from tumor pa10t12 GACGCTGTCG noncancerous tissue 10-15 cm away from tumor pa10t18 GACGTATGAC noncancerous tissue 10-15 cm away from tumor pa10t19 GACTAGCTAG noncancerous tissue 10-15 cm away from tumor pa10t20 GAGACGTCGC noncancerous tissue 10-15 cm away from tumor pa10t34 GAGAGAGACG noncancerous tissue 10-15 cm away from tumor pa10t37 GCGTAGACTA noncancerous tissue 10-15 cm away from tumor pa10t38 GCGTCGTGTC noncancerous tissue 10-15 cm away from tumor pa10t39 ACGAGTAGAC noncancerous tissue 10-15 cm away from tumor pa10t40 CTACTCGTAG noncancerous tissue 10-15 cm away from tumor pa10t41 GTACAGTACG noncancerous tissue 10-15 cm away from tumor pa10t42 GTCGTACGTA noncancerous tissue 10-15 cm away from tumor pa10t43 GTGTACGACG noncancerous tissue 10-15 cm away from tumor pa10t44 ACACAGTGAG noncancerous tissue 10-15 cm away from tumor pa10t45 ACACTCATAC noncancerous tissue 10-15 cm away from tumor pa10t46 ACAGACAGCG noncancerous tissue 10-15 cm away from tumor pa10t47 ACAGACTATA noncancerous tissue 10-15 cm away from tumor subject barcode(5'-3') swp1 ACAGAGACTC rectal swab from patients with colorectal cancer swp2 ACAGCTCGTG rectal swab from patients with colorectal cancer swp3 ACAGTGTCGA rectal swab from patients with colorectal cancer swp4 ACGAGCGCGC rectal swab from patients with colorectal cancer swp5 ACGATGAGTG rectal swab from patients with colorectal cancer swp6 ACGCGAGAGA rectal swab from patients with colorectal cancer swp7 ACGCTCTCTC rectal swab from patients with colorectal cancer swp8 ACGTCGCTGA rectal swab from patients with colorectal cancer swp9 ACGTCTAGCA rectal swab from patients with colorectal cancer swp10 ACTAGTGATA rectal swab from patients with colorectal cancer swp11 ACTCACACTG rectal swab from patients with colorectal cancer swp12 ACTCACTAGC rectal swab from patients with colorectal cancer swp13 ACTCTATATA rectal swab from patients with colorectal cancer swp14 ACTGATCTCG rectal swab from patients with colorectal cancer swp15 ACTGCTGTAC rectal swab from patients with colorectal cancer swp16 ACTGTAGCGC rectal swab from patients with colorectal cancer swp17 AGACACTCAC rectal swab from patients with colorectal cancer swp18 AGACATATAG rectal swab from patients with colorectal cancer swp19 AGACGTGATC rectal swab from patients with colorectal cancer swp20 AGAGTACAGA rectal swab from patients with colorectal cancer swp21 AGAGTATCTC rectal swab from patients with colorectal cancer swp22 AGATACGCTG rectal swab from patients with colorectal cancer swp23 AGATCTAGTC rectal swab from patients with colorectal cancer swp24 AGCAGCGTAG rectal swab from patients with colorectal cancer swp25 AGCGCACGAG rectal swab from patients with colorectal cancer swp26 AGCGTGTGCG rectal swab from patients with colorectal cancer swp27 AGCTAGATAC rectal swab from patients with colorectal cancer swp28 AGCTGTCGAC rectal swab from patients with colorectal cancer swp29 AGTATGCACG rectal swab from patients with colorectal cancer swp30 AGTCGCGCTA rectal swab from patients with colorectal cancer swp31 AGTCTGTCTG rectal swab from patients with colorectal cancer swp32 ATACACACGA rectal swab from patients with colorectal cancer swp33 ATACGCGTGC rectal swab from patients with colorectal cancer subject barcode(5'-3') swc1 ATACTAGCAC rectal swab from healthy volunteers swc2 ATAGAGCTAG rectal swab from healthy volunteers swc3 ATATAGAGTA rectal swab from healthy volunteers swc4 ATCGCTCACG rectal swab from healthy volunteers swc5 ATCGTCAGTC rectal swab from healthy volunteers swc6 ATCTCTCGTA rectal swab from healthy volunteers swc7 ATCTGAGACG rectal swab from healthy volunteers swc8 ATGCTACGTC rectal swab from healthy volunteers swc9 ATGTGACTAC rectal swab from healthy volunteers swc10 CACGAGACAG rectal swab from healthy volunteers swc11 CACGCGAGTC rectal swab from healthy volunteers swc12 CACGCTACGA rectal swab from healthy volunteers swc13 CACGTGTATA rectal swab from healthy volunteers swc14 CACTACGATG rectal swab from healthy volunteers swc15 CACTATACTC rectal swab from healthy volunteers swc16 CAGCGTACTG rectal swab from healthy volunteers swc17 CAGTCTCTAG rectal swab from healthy volunteers swc18 CATAGTCGCG rectal swab from healthy volunteers swc19 CGAGACACTA rectal swab from healthy volunteers swc20 CGAGAGTGTG rectal swab from healthy volunteers swc21 CGAGTCATCG rectal swab from healthy volunteers swc22 CGATCGTATA rectal swab from healthy volunteers swc23 CGCAGTACGC rectal swab from healthy volunteers swc24 CGCGATCGTA rectal swab from healthy volunteers swc25 CGCGCTATAC rectal swab from healthy volunteers swc26 CGTACAGATA rectal swab from healthy volunteers swc27 CGTAGCTCTC rectal swab from healthy volunteers swc28 CGTATAGTGC rectal swab from healthy volunteers swc29 CGTCAGCGAC rectal swab from healthy volunteers swc30 CGTCGCAGTG rectal swab from healthy volunteers swc31 CGTCTCACGA rectal swab from healthy volunteers swc32 CGTGACTCAG rectal swab from healthy volunteers swc33 CTACACGCTC rectal swab from healthy volunteers swc34 CTACGATATG rectal swab from healthy volunteers

text: human gut metagenome

text: human gut metagenome


name: Nucleosome maps of multicellular D. discoideum aggregates

status: PUBLIC

characteristic: External Id

text: Pennsylvania State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dictyostelium discoideum AX4

characteristic: organism

text: Gene and nucleosome organization in Dictyostelium

characteristic: title


text: Cancer Center, Georgia Regents University

text: live

text: Generic

tag: attribute

characteristic: cell line

text: Homo sapiens

text: Sympathetic nervous system

characteristic: tissue origin

text: Input

text: Neuroblastoma

characteristic: tumor cell type


text: live

text: Generic

text: anti-Myc tag (clone 4A6, Millipore)

characteristic: chip antibody

text: Homo sapiens

text: Sympathetic nervous system

text: Neuroblastoma


text: Lab of Genomic Medicine, Institute of Molecular Medicine, Peking University

text: live

text: Generic

text: male

characteristic: gender

text: strand-specific, dUTP protocal

characteristic: library type

text: Macaca mulatta

text: adipose

text: adipose

characteristic: tissue

text: rhesus adipose


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: male

text: strand-specific, dUTP protocal

text: Macaca mulatta

text: prefrontal cortex

text: prefrontal cortex

text: rhesus prefrontal cortex


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: male

text: strand-specific, dUTP protocal

text: Macaca mulatta

text: liver

text: liver

text: rhesus liver


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: male

text: strand-specific, dUTP protocal

text: Macaca mulatta

text: skeletal muscle

text: skeletal muscle

text: rhesus skeletal muscle


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: male

text: strand-specific, dUTP protocal

text: Macaca mulatta

text: testis

text: testis

text: rhesus testis


text: Foshan University

text: live

text: Generic

text: hair follicle

characteristic: cell type

text: method:DDRT-PCR; vector:M13

characteristic: description

text: embryonic day 50,70,75,80,90,100

characteristic: dev-stage

text: Capra hircus

characteristic: organism

text: male and female

characteristic: sex

text: Inner Mongolia cashmere goat

characteristic: strain

text: skin

characteristic: tissue-type

text: Goat embryonic skin hair follicle library


text: Ministry of Education/Anhui Agricultural University

text: live

text: Generic

text: Longjing 43

characteristic: cultivar

text: The leaves of tea plant (2 year) were fed by Tea Looper (Ectropic oblique),and the others were control leaves unattacked. The leaves of the six groups were harvested after 3,6,9,12,24,48 hours when tested leaves were eclipsed 40% of the lamina surface, respectively.

text: mature

text: E. coli DH5alpha

characteristic: lab-host

text: Camellia sinensis

text: hermaphrodite

text: leaf

text: cDNA-AFLP of Tea Looper (Ectropic oblique) eclipsed tea plant leaves

characteristic: title

text: Plasmid

characteristic: vector


Micorbial community in MAR systems

characteristic: External Id

text: KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: managed aquifer recharge system

characteristic: biome

text: Generic

characteristic: biosamplemodel

text: microbial community composition in managed aquifer recharge (MAR) systems across both laboratory and field scales

text: water

characteristic: env package

text: aquifer

characteristic: feature

text: MIMARKS

characteristic: investigation type

text: GSC:MIMARKS

characteristic: keywords

text: water

characteristic: material

text: groundwater metagenome

text: MAR

characteristic: project name

text: Dissolved Organic Carbon Influences Microbial Community Composition and Diversity in Geographically Distinct Managed Aquifer Recharge Systems


0dpa ovule

text: College of life sciences, Peking University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Gossypium raimondii

characteristic: organism

text: 0dpa ovule from Gossypium raimondii


3dpa ovule

characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Gossypium raimondii

text: 3dpa ovule from Gossypium raimondii

characteristic: title


mature leaf

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: Gossypium raimondii

text: mature leaf frome Gossypium raimondii


text: Institut Pasteur

text: live

text: Generic

text: Aedes albopictus

text: C6/36 - SINV-GFP


text: Institut Pasteur

text: live

text: Generic

text: Aedes aegypti

text: Aag2 - SINV-GFP


text: Lila Vodkin, Crop Sciences, University of Illinois

text: live

text: Generic

text: Williams

characteristic: cultivar

text: early maturation green 25-50 mg

characteristic: developmental stage

text: Glycine max

text: Cotyledon

text: Cotyledon

characteristic: tissue

text: Cotyledon (25-50 mg)


text: live

text: Generic

text: Williams

text: early maturation green 25-50 mg

text: Glycine max

text: Seed Coat

text: Seed Coat

text: Seed Coat (25-50 mg)


text: live

text: Generic

text: Williams

text: mid maturation yellow-green 100-200 mg

text: Glycine max

text: Cotyledon

text: Cotyledon

text: Cotyledon (100-200 mg)


text: live

text: Generic

text: Williams

text: mid maturation yellow-green 100-200 mg

text: Glycine max

text: Seed Coat

text: Seed Coat

text: Seed Coat (100-200 mg)


text: live

text: Generic

text: Williams

text: late maturation yellow 300-400 mg

text: Glycine max

text: Cotyledon

text: Cotyledon

text: Cotyledon (300-400 mg)


text: University of Birmingham - Centre for Systems Biology

text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 0104:H4 STEC 280


text: Boffelli, Center for Genetics, CHORI

text: live

text: Generic

text: 2-3h embryo (Stage 5)

text: Drosophila melanogaster

text: whole embryo

text: Canton S

characteristic: strain

text: whole embryo

text: Stage 5 whole genome


text: Boffelli, Center for Genetics, CHORI

text: live

text: Generic

text: 2-3h embryo (Stage 5)

text: Drosophila melanogaster

text: whole embryo

text: R

text: whole embryo

text: Stage 5 validation


text: Research And Testing Laboratory

text: live

text: Generic

text: human gut metagenome

text: Bacterial (16S) samples


ITS

text: Research And Testing Laboratory

text: live

text: Generic

text: human gut metagenome

text: Fungal (ITS) samples


text: Cancer Epigenetics, PEBC, IDIBELL

text: live

text: Generic

text: 26 years

characteristic: age

text: mononuclear cells

characteristic: cell type

text: healthy

characteristic: disease status

text: Homo sapiens

text: peripheral blood

characteristic: source tissue

text: middle-age donor

text: middle-age donor


text: NURSA: Nuclear Receptor Signaling Atlas, Molecular and Cellular Biology, Baylor College of Medicine

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ROSA26 Tam-ERCre

characteristic: background strain

text: male

characteristic: gender

text: Mus musculus

text: input

text: pancreas

text: input


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: antibody

text: R&D systems

characteristic: antibody vendor

text: ROSA26 Tam-ERCre

text: male

text: Mus musculus

characteristic: organism

text: Lrh1 ChIP

text: pancreas

text: Lrh1 ChIP


text: Ruvkun, Molecular Biology, Massachusetts General Hospital

characteristic: INSDC first public

text: live

text: Generic

text: young adult

characteristic: developmental stage

text: Caenorhabditis elegans

text: Whole worms, control transgene

text: mgSi3[pCMP2(ubl-1p::GFP::ubl-1-3'UTR Cbr-unc-119(+))] II; unc-119(ed3) IV

characteristic: strain

text: whole body

characteristic: tissue

text: control transgene

characteristic: title

text: control

characteristic: transgene


characteristic: INSDC last update

text: live

text: Generic

text: young adult

text: Caenorhabditis elegans

text: Whole worms, siRNA sensor transgene

text: mgSi4[pCMP2(ubl-1p::GFP::siR-1-sensor-ubl-1-3'UTR Cbr-unc-119(+))] II; unc-119(ed3) IV

text: whole body

text: siRNA sensor transgene

text: siRNA sensor


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: L4 larvae

text: wild type

characteristic: genotype

text: Caenorhabditis elegans

text: Whole worms, larvae, untreated

text: whole body

text: wild type, 52 h, untreated


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: adult

text: wild type

text: Caenorhabditis elegans

text: Whole worms, adult, untreated

text: whole body

text: wild type, 68 h, untreated


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: L4 larvae

text: wild type

text: Caenorhabditis elegans

text: Whole worms, larvae, beta eliminated

text: whole body

text: wild type, 52 h, beta eliminated

text: beta elimination

characteristic: treatment


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

characteristic: organism

text: Ba.P Salt Cavern 01 (Facility PW)


text: University of Calgary

characteristic: INSDC first public

text: live

text: Generic

text: hydrocarbon metagenome

text: Ba.P Salt Cavern 02 (14-28 cavern return)


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

text: Ba.P Salt Cavern 03 (15-28 cavern return)


text: University of Calgary

text: live

text: Generic

text: hydrocarbon metagenome

text: Ba.P Salt Cavern 04 (disposal pump DB550)


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Female

characteristic: host sex

text: Anolis carolinensis

characteristic: sample name

text: Generic sample from Anolis carolinensis


text: Broad Institute

text: live

text: Generic

text: Generic

text: Anolis carolinensis

text: Generic sample from Anolis carolinensis

characteristic: title


text: Broad Institute

text: live

text: Model organism or animal

text: sample includes 3 females and 1 male

characteristic: comment

characteristic: isolate

text: Anolis carolinensis

text: pooled male and female

characteristic: sex

text: brain

characteristic: tissue

text: Animal sample from Anolis carolinensis


text: Broad Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Generic

text: Anopheles quadriannulatus

text: SANGWE

characteristic: strain

text: Generic sample from Anopheles quadriannulatus


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: Anopheles albimanus

text: STECLA

text: Generic sample from Anopheles albimanus


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Anopheles arabiensis

characteristic: organism

text: Dongola

text: Generic sample from Anopheles arabiensis


text: Broad Institute

text: live

text: Generic

text: Generic

text: human gut metagenome

characteristic: sample name

text: Generic sample from unclassified Bacteria (miscellaneous)

characteristic: title


text: Broad Institute

text: live

text: Generic

text: Generic

text: Female

characteristic: host sex

text: Haplochromis burtoni

text: Generic sample from Haplochromis burtoni


Soy 2

text: USDA ARS

text: live

text: Generic

text: Plants were grown in ambient air.

characteristic: description

text: Glycine max

text: Comparing the response to chronic ozone of five agriculturally important legume species.


PRJNA28331.Turicella otitidis

text: Broad Institute

text: live

text: Generic

text: Generic

text: Corynebacterium otitidis ATCC 51513

text: Turicella otitidis

text: ATCC 51513

text: Generic sample from Turicella otitidis ATCC 51513


PRJNA28331.Facklamia hominis

text: Broad Institute

text: live

text: Generic

text: Generic

text: Facklamia hominis CCUG 36813

text: Facklamia hominis

text: CCUG 36813

text: Generic sample from Facklamia hominis CCUG 36813


Soy 1

text: USDA ARS

text: live

text: Generic

text: Plants were grown in ambient air.

text: Glycine max


PRJNA28331.Facklamia ignava

text: Broad Institute

text: live

text: Generic

text: Generic

text: Falseniella ignava CCUG 37419

text: Facklamia ignava

text: CCUG 37419

text: Generic sample from Facklamia ignava CCUG 37419

text: type strain of Facklamia ignava

characteristic: type material


Soy 8

text: USDA ARS

characteristic: INSDC last update

text: live

text: Generic

text: Plants were grown in ambient air.

text: Glycine max


Soy 4

text: USDA ARS

characteristic: INSDC secondary accession

text: live

text: Generic

text: Plants were grown in chronic elevated ozone (150 ppb for 8 hr/day) for 6 weeks.

text: Glycine max


Soy 5

text: USDA ARS

text: live

characteristic: INSDC status

text: Generic

text: Plants were grown in chronic elevated ozone (150ppb for 8hr/day) for 6 weeks.

text: Glycine max


Soy 6

text: USDA ARS

text: live

text: Generic

characteristic: SRA accession

text: Glycine max


text: CDC

text: live

text: Pathogen.cl

characteristic: collection date

text: USA

text: stool sample from patient with cholera

characteristic: isolation-source

text: associated with travel to Pakistan

characteristic: note

text: Vibrio cholerae O1 str. 2009V-1046

characteristic: serogroup

text: Source DNA available from Dr. Peter Gerner-Smidt, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta GA, USA

characteristic: source of DNA

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2009V-1046


characteristic: External Id

text: CDC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: USA

text: stool sample from patient with cholera

text: associated with travel to Pakistan

text: Vibrio cholerae O1 str. 2010V-1014

characteristic: organism

text: Source DNA available from Dr. Peter Gerner-Smidt, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta GA USA

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2010V-1014


text: CDC

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: Haiti

text: stool sample from patient with cholera

text: associated with 2010-2011 cholera outbreak in Haiti

text: Vibrio cholerae O1 str. 2011EL-1089

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2011EL-1089

characteristic: title


text: CDC

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Haiti

text: stool sample from patient with cholera

text: Vibrio cholerae O1 str. 2011EL-1133

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2011EL-1133


text: CDC

text: live

text: Pathogen.cl

text: South Africa

text: stool sample from patient with cholera

text: associated with cholera outbreak in Zimbabwe

text: Vibrio cholerae O1 str. 2011EL-1137

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2011EL-1137


text: CDC

text: live

text: Pathogen.cl

text: Dominican Republic

text: stool sample from patient with cholera

text: Vibrio cholerae O1 str. 2011V-1021

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2011V-1021


text: CDC

text: live

text: Pathogen.cl

text: USA

text: stool sample from patient with cholera

text: associated with travel to India

text: Vibrio cholerae O1 str. 3500-05

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 3500-05


text: CDC

text: live

text: Pathogen.cl

text: USA

text: stool sample from patient with cholera

text: associated with travel to India

text: Vibrio cholerae O1 str. 3546-06

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 3546-06


text: CDC

text: live

text: Pathogen.cl

text: USA

text: stool sample from patient with cholera

text: associated with travel to Nepal

text: Vibrio cholerae O1 str. 3554-08

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 3554-08


text: CDC

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: USA

characteristic: geo loc name

text: water

text: environmental isolate from USA Gulf Coast

text: Vibrio cholerae O1 str. 3569-08

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 3569-08


text: CDC

text: live

text: Pathogen.cl

characteristic: collection date

text: USA

text: stool sample from patient with cholera

characteristic: isolation-source

text: associated with travel to Pakistan

characteristic: note

text: Vibrio cholerae O1 str. 3582-05

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 3582-05


text: CDC

text: live

text: Pathogen.cl

text: USA

text: stool sample from patient with cholera

text: associated with travel to Sri Lanka/India

text: Vibrio cholerae O1 str. 2009V-1085

characteristic: serogroup

characteristic: source of DNA

text: Homo sapiens

characteristic: specific host

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2009V-1085


characteristic: External Id

text: CDC

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: Peru

text: stool sample from patient with cholera

text: associated with Latin America outbreak

text: Vibrio cholerae O1 str. C6706

text: Homo sapiens

characteristic: strain

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. C6706


text: CDC

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Ministere de la Sante Publique et de la Population, Haiti

characteristic: collected-by

characteristic: culture-collection

text: Haiti

text: stool sample from patient with cholera

text: Isolate from Haiti 2010 cholera outbreak

text: Vibrio cholerae O1 str. 2010EL-1786

characteristic: sample name

text: Source DNA available from Dr. Peter Gerner-Smidt, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta GA USA

text: Homo sapiens

text: Pathogen: environmental/food/other sample from Vibrio cholerae O1 str. 2010EL-1786


text: CDC

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

text: USA

text: stool sample from patient with cholera

text: associated with travel to India

text: Vibrio cholerae O1 str. 2009V-1096

characteristic: organism

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2009V-1096

characteristic: title


text: CDC

text: live

text: Pathogen.cl

characteristic: collection date

text: USA

text: stool sample from patient with cholera

characteristic: isolation-source

text: associated with travel to Pakistan

characteristic: note

text: Vibrio cholerae O1 str. 2009V-1116

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2009V-1116


text: CDC

text: live

text: Pathogen.cl

text: USA

text: stool sample from patient with cholera

text: associated with travel to India

text: Vibrio cholerae O1 str. 2009V-1131

characteristic: serogroup

characteristic: source of DNA

text: Homo sapiens

characteristic: specific host

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2009V-1131


characteristic: External Id

text: CDC

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: Cameroon

text: stool sample from patient with cholera

text: associated with cholera outbreak in western Africa

text: Vibrio cholerae O1 str. 2010EL-1749

text: Homo sapiens

characteristic: strain

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2010EL-1749


text: CDC

characteristic: INSDC first public

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Haiti

text: stool sample from patient with cholera

text: associated with 2010-2011 cholera outbreak in Haiti

text: Vibrio cholerae O1 str. 2010EL-1961

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2010EL-1961


text: CDC

text: live

text: Pathogen.cl

text: Haiti

text: stool sample from patient with cholera

text: Vibrio cholerae O1 str. 2010EL-2010H

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2010EL-2010H


text: CDC

text: live

text: Pathogen.cl

text: Haiti

text: stool sample from patient with cholera

text: Vibrio cholerae O1 str. 2010EL-2010N

text: Homo sapiens

text: Pathogen: clinical or host-associated sample from Vibrio cholerae O1 str. 2010EL-2010N


text: Harvard University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: BY4741 loc1::KAN

characteristic: cell line

text: Saccharomyces cerevisiae

text: loc1- cells (BY4741 loc1::KAN)

text: Whole-cell total RNA prep

characteristic: treatment


text: Harvard University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Saccharomyces cerevisiae

characteristic: organism

text: Wild-type cells (BY4741)

characteristic: title

text: Whole-cell total RNA prep


text: Harvard University

text: live

text: Generic

text: BY4741 loc1::KAN

text: Saccharomyces cerevisiae

text: loc1- cells (BY4741 loc1::KAN)

text: Isolation of ribosome footprint RNAs


text: Harvard University

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild-type cells (BY4741)

text: Isolation of ribosome footprint RNAs


text: Institute of Human Genetics, CNRS UPR 1142

text: live

text: Generic

text: 4-12 hr

characteristic: age

text: Embryo

characteristic: developmental stage

text: Oregon-R w1118

characteristic: genotype

text: Drosophila melanogaster

text: 4-12 hr embryos

text: Pilot simplified Hi-C


characteristic: External Id

text: live

text: Generic

text: 16-18 hr

text: Embryo

text: Oregon-R w1118

text: Drosophila melanogaster

text: 16-18 hr embryos

text: Deep-sequenced simplified Hi-C


text: Buell Lab, Dept. of Plant Biology, Michigan State University

characteristic: INSDC center name

text: live

text: Generic

text: Solanum lycopersicum Mixed Tissue - FL7600

characteristic: description

text: Solanum lycopersicum


characteristic: INSDC first public

text: live

text: Generic

text: Solanum lycopersicum Mixed Tissue - NC84173

text: Solanum lycopersicum


text: live

text: Generic

characteristic: NCBI submission model

text: Solanum lycopersicum Mixed Tissue - OH9242

text: Solanum lycopersicum


text: live

text: Generic

characteristic: NCBI submission package

text: Solanum lycopersicum Mixed Tissue - T5

text: Solanum lycopersicum

text: Solanum lycopersicum Mixed Tissue - T5


characteristic: INSDC secondary accession

text: live

text: Generic

text: Solanum lycopersicum Mixed Tissue - PI114490

text: Solanum lycopersicum


text: live

text: Generic

characteristic: SRA accession

text: Solanum pimpinellifolium Mixed Tissue - PI212816

text: Solanum pimpinellifolium


poplar-fungi-CS

text: Korea University

text: live

text: Generic

text: Fungal community of soil samples obtained from soils contaminated with zinc mine tailings

text: Fungi

text: Fungal community of rhizosphere soil of poplars - CS


poplar-fungi-WT

text: Korea University

text: live

text: Generic

text: Fungal community of soil samples obtained from rhizosphrere of 1.5 year old WT poplar in metal contaminated soil

text: Fungi

text: Fungal community of rhizosphere soil of poplars - WT1.5


text: Korea University

text: live

text: Generic

text: Fungal community of soil samples obtained from rhizosphrere of 2.5 year old WT poplar in metal contaminated soil

text: Fungi

text: Fungal community of rhizosphere soil of poplars - WT2.5


text: Korea University

text: live

text: Generic

text: Fungal community of soil samples obtained from rhizosphrere of 3.0 year old WT poplar in metal contaminated soil

text: Fungi

text: Fungal community of rhizosphere soil of poplars - WT3.0


text: Korea University

text: live

text: Generic

text: Fungal community of soil samples obtained from rhizosphrere of 1.5 year old GM poplar in metal contaminated soil

text: Fungi

text: Fungal community of rhizosphere soil of poplars - GM1.5


text: Korea University

text: live

text: Generic

text: Fungal community of soil samples obtained from rhizosphrere of 2.5 year old GM poplar in metal contaminated soil

text: Fungi

text: Fungal community of rhizosphere soil of poplars - GM2.5


text: Korea University

text: live

text: Generic

text: Fungal community of soil samples obtained from rhizosphrere of 3.0 year old GM poplar in metal contaminated soil

text: Fungi

text: Fungal community of rhizosphere soil of poplars - GM3.0


text: Yale University, State Lab

text: live

text: Generic

text: Homo sapiens


ZF RNA sequence

text: East China University Of Science And Technology

text: live

text: Generic

text: RNA sequencinag of mRNAs from zebrafish liver following live attenuate vaccine immunized 2 days.

text: Danio rerio

text: RNA seq-based liver transcriptome analysis revealed an activated MHC-I pathway and an inhibited MHC-II pathway at the early stage of vaccine immunization in zebrafish


text: IGB Berlin

text: live

text: Generic

text: Alexandrium tamarense

text: Alexandrium transcriptome analysis


text: X. Sunney Xie, Chemistry and Chemical Biology, Harvard University

text: live

text: Generic

text: F-, lambda-, rph-1

text: Escherichia coli str. K-12 substr. MG1655

characteristic: reference genome

text: RNA from Escherichia coli

characteristic: strain

characteristic: substrain


Ecoli

text: University of Birmingham - Centre for Systems Biology

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Escherichia coli

text: Sequencing of 7 E. coli strains on MiSeq


text: ENCODE DCC

text: live

text: Generic

text: Lonza

characteristic: biomaterial provider

text: SAEC

characteristic: cell

text: small airway epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: DnaseDgf

characteristic: datatype

text: DNase Digital Footprinting

characteristic: datatype description

text: UW

characteristic: lab

text: Stamatoyannopoulous - University of Washington

characteristic: lab description

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: SAEC

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

text: NH-A

text: astrocytes (also called Astrocy)

text: normal

text: ectoderm

text: human

text: U

text: DnaseDgf

text: DNase Digital Footprinting

text: UW

text: Bowtie 0.12.7

text: Homo sapiens

text: NH-A


text: ENCODE DCC

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Lonza

characteristic: biomaterial provider

text: HRCEpiC

characteristic: cell

text: renal cortical epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: U

text: DnaseDgf

text: DNase Digital Footprinting

text: UW

text: Bowtie 0.12.7

text: Homo sapiens

text: HRCEpiC


text: ENCODE DCC

text: live

text: Generic

text: ScienCell

text: HPF

text: pulmonary fibroblasts isolated from lung tissue

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: DnaseDgf

characteristic: datatype

text: DNase Digital Footprinting

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

text: HPF


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: Lonza

text: AoAF

text: aortic adventitial fibroblast cells

text: normal

text: mesoderm

text: human

text: F

text: DnaseDgf

text: DNase Digital Footprinting

text: UW

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: organism

text: AoAF

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

text: HPdLF

characteristic: cell

text: periodontal ligament fibroblasts

characteristic: cell description

text: human

text: M

text: DnaseDgf

text: DNase Digital Footprinting

text: UW

text: Bowtie 0.12.7

text: Homo sapiens

text: HPdLF


text: ENCODE DCC

text: live

text: Generic

text: ScienCell

text: HPAF

text: pulmonary artery fibroblasts

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: DnaseDgf

characteristic: datatype

text: DNase Digital Footprinting

characteristic: datatype description

text: UW

characteristic: lab

text: Bowtie 0.12.7

text: Homo sapiens

text: HPAF


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: CTCF

characteristic: antibody

text: rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed.

text: mesoderm

text: human

text: F

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

text: ChIP-seq

text: UW

characteristic: lab description

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

text: Millipore

text: Coriell

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

text: ChipSeq

characteristic: datatype

text: ChIP-seq

characteristic: datatype description

text: UW

characteristic: lab

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: organism

text: tier 1

characteristic: title


IH8.1 Bacteria

characteristic: External Id

text: Charles Darwin University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: Gove Harbour, Melville Bay, Northern Territory, Australia. Map co-ordinates E683280 S8651330. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was sulfidic and anoxic, with Eh readings consistently below -250meV. Neutral pH, very fine particles, organic carbon content 0.7 - 2.5%. Contains hydrotalcite and heavy metals. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

characteristic: description

text: uncultured marine bacterium

text: Inner Harbour 8 Bacteria Duplicate 1


IH8.2 Bacteria

text: Charles Darwin University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: uncultured marine bacterium

text: Inner Harbour 8 Bacteria Duplicate 2


IH6.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Gove Harbour, Melville Bay, Northern Territory, Australia. Map co-ordinates E683200 S8651170. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was sulfidic and anoxic, with Eh readings consistently below -250meV. Neutral pH, very fine particles, organic carbon content 1.7 - 2.0%. Contains heavy metals. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Inner Harbour 6 Bacteria duplicate 1


IH6.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Inner Harbour 6 Bacteria duplicate 2


IH4.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Gove Harbour, Melville Bay, Northern Territory, Australia. Map co-ordinates E683180 S8650940. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was sulfidic and anoxic, with Eh readings consistently below -300meV. Neutral pH, very fine particles, organic carbon content 1.3 - 1.6%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Inner Harbour 4 Bacteria duplicate 1


IH4.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Inner Harbour 4 Bacteria duplicate 2


C0.25.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Gove Harbour, Melville Bay, Northern Territory, Australia. Map co-ordinates E683250 S8650080. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was sulfidic and anoxic, with Eh readings consistently below -200meV. Neutral pH, very fine particles, organic carbon content 1.1 - 1.6%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Transect C 0.25 Bacteria duplicate 1


C0.25.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Transect C 0.25 Bacteria duplicate 2


D2.0.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Gove Harbour, Melville Bay, Northern Territory, Australia. Map co-ordinates E683000 S8648500. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was anoxic, with Eh readings consistently below -100meV. Neutral pH, very fine particles, organic carbon content 0.9 - 1.5%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Transect D 2.0 Bacteria duplicate 1


D2.0.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Transect D 2.0 Bacteria duplicate 2


D5.0.1 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: Gove Harbour, Melville Bay, Northern Territory, Australia. Map co-ordinates E683000 S8645500. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was moderatetly anoxic to oxic, with Eh readings frequently between -150meV and -100meV. Neutral pH, sandy particles, organic carbon content 0.2 - 0.6%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Transect D 5.0 Bacteria duplicate 1


D5.0.2 Bacteria

text: Charles Darwin University

text: live

text: Generic

text: uncultured marine bacterium

text: Transect D 5.0 Bacteria duplicate 2


text: Institute for Genomics and Systems Biology, University of Chicago

text: live

text: Generic

text: CNC

characteristic: antibody name

text: AdultMale

characteristic: developmental stage

text: White Lab

characteristic: manufacturer

text: Drosophila melanogaster

text: AdultMale

text: iso1 (y; bw cn sp)

characteristic: strain

text: CNC_ChIPSeq_1 and 2


text: live

text: Generic

text: AdultMale

text: Drosophila melanogaster

text: AdultMale

text: iso1 (y; bw cn sp)


text: live

text: Generic

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: Ash2_ChIPSeq_1 and 2


text: live

text: Generic

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)


text: live

text: Generic

text: Prd

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: Prd_ChIPSeq_1 and 2


text: live

text: Generic

text: sc

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: sc_ChIPSeq_1 and 2


text: live

text: Generic

text: br-core

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: br-core_ChIPSeq_1 and 2


text: live

text: Generic

text: dm

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: dm_ChIPSeq_1 and 2


text: live

text: Generic

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: CG16778_ChIPSeq_1 and 2


text: live

text: Generic

text: CNC

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: E16-24_CNC_ChIPSeq_1 and 2


text: live

text: Generic

text: Fru

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: Fru_ChIPSeq_1 and 2


text: live

text: Generic

text: sr

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: sr_ChIPSeq_1 and 2


text: live

text: Generic

text: SuH

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: SuH_ChIPSeq_1 and 2


text: live

text: Generic

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: E8-16_HP1_ChIPSeq_1 and 2


text: live

text: Generic

text: Hth

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: Hth_ChIPSeq_1 and 2


text: live

text: Generic

text: jim

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: jim_ChIPSeq_1 and 2


text: live

text: Generic

text: sr

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: E8-16_sr_ChIPSeq_1 and 2


text: live

text: Generic

text: SuH

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: E8-16_SuH_ChIPSeq_1 and 2


text: live

text: Generic

text: dCTBP

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)


text: live

text: Generic

text: Kr

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: Kr_ChIPSeq_1 and 2


text: live

text: Generic

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)


text: live

text: Generic

text: psq

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: psq_ChIPSeq_1 and 2


text: live

text: Generic

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)

text: Kc167_Sin3A_ChIPSeq_1 and 2


text: live

text: Generic

text: en

text: White Lab

text: Drosophila melanogaster

text: iso1 (y; bw cn sp)


text: live

text: Generic

text: psq

text: WPP

text: White Lab

text: Drosophila melanogaster

text: WPP

text: iso1 (y; bw cn sp)

text: WPP_psq_ChIPSeq_1 and 2


text: live

text: Generic

text: WPP

text: Drosophila melanogaster

text: WPP

text: iso1 (y; bw cn sp)


text: live

text: Generic

text: WPP

text: White Lab

text: Drosophila melanogaster

text: WPP

text: iso1 (y; bw cn sp)

text: WPP_Stat92E_ChIPSeq_1 and 2


text: live

text: Generic

text: WPP

text: White Lab

text: Drosophila melanogaster

text: WPP

text: iso1 (y; bw cn sp)

text: WPP_CG8478_ChIPSeq_1 and 2


text: Horticulture College, Nanjing Agriculture University

text: live

text: Generic

text: Vitis amurensis

text: flower and berry

text: Inflorescences (20 days)

characteristic: tissue-type

text: berry (15 days, 30 days and 45 days)

text: Amur grapevine miRNA-seq


text: Non-coding RNAs and viral infections, UPR 9002 - Architecture et Réactivité de l'ARN, CNRS - IBMC

text: live

text: Generic

characteristic: cell line

text: fibroblast

characteristic: cell type

text: Mus musculus

characteristic: organism

text: Total RNA extracted from mock infected NIH-3T3 cells


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: fibroblast

text: murine cytomegalovirus (MCMV)

characteristic: infected with

text: Mus musculus

text: Total RNA extracted from MCMV infected NIH-3T3 cells

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: fibroblast

characteristic: ip antibody

text: Wako

characteristic: ip antibody vendor

text: Mus musculus

text: Ago 2 immunoprecipitated RNA extracted from mock infected NIH-3T3 cells


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: fibroblast

text: murine cytomegalovirus (MCMV)

text: Wako

text: Mus musculus

text: Ago 2 immunoprecipitated RNA extracted from MCMV infected NIH-3T3 cells


Control(RNAi) Schmidtea mediterranea

text: University of Illinois, Urbana-Champaign

text: live

text: Generic

text: Schmidtea mediterranea

text: Illumina sequencing of transcripts from Schmidtea mediterranea after control RNAi


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Corynebacterium sp. KPL1995

characteristic: sample name

characteristic: strain

text: Generic sample from Corynebacterium sp. KPL1995


PRJNA67667.Plasmodium falciparum PS096

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum MaliPS096_E11

characteristic: organism

text: Plasmodium falciparum PS096

text: Generic sample from Plasmodium falciparum MaliPS096_E11


name: PRJNA67667.Plasmodium falciparum Malayan Camp

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Malaysia

characteristic: geographic location

text: Plasmodium falciparum CAMP/Malaysia

text: Plasmodium falciparum Malayan Camp

text: Malayan Camp

text: Generic sample from Plasmodium falciparum CAMP/Malaysia


name: PRJNA67667.Plasmodium falciparum Vietnam Oak-Knoll (FVO)

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Vietnam

text: Vietnam Oak-Knoll (FVO)

text: Generic sample from Plasmodium falciparum Vietnam Oak-Knoll (FVO)


PRJNA67667.Plasmodium falciparum 7G8

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum 7G8

text: Plasmodium falciparum 7G8

text: Generic sample from Plasmodium falciparum 7G8

characteristic: title


PRJNA67667.Plasmodium falciparum FCH/4

text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Philippines

text: Plasmodium falciparum FCH/4

text: Plasmodium falciparum FCH/4

text: Generic sample from Plasmodium falciparum FCH/4


name: PRJNA67667.Plasmodium falciparum Uganda Palo Alto (FUP/H)

text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Uganda

text: Plasmodium falciparum Palo Alto/Uganda

text: Uganda Palo-Alto (FUP/H)

text: Generic sample from Plasmodium falciparum Palo Alto/Uganda


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Corynebacterium sp. KPL1986

text: Generic sample from Corynebacterium sp. KPL1986


text: Broad Institute

text: live

text: Generic

text: Generic

text: Corynebacterium sp. KPL1989

text: Generic sample from Corynebacterium sp. KPL1989


text: Coupland Lab, Plant Developmental Biology, Max Planck Institute for Plant Breeding Research

text: live

text: Generic

text: before induction

characteristic: developmental stage

characteristic: ecotype

text: Arabidopsis thaliana

text: laser dissected shoot apical meristems

text: shoot apical meristems

characteristic: tissue

text: +0 long day (LD) A


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: before induction

text: Arabidopsis thaliana

text: laser dissected shoot apical meristems

text: shoot apical meristems

text: +0 long day (LD) B


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: before induction

text: Arabidopsis thaliana

text: laser dissected shoot apical meristems

text: shoot apical meristems

text: +0 long day (LD) C


text: live

text: Generic

text: after 1 LD induction

text: Arabidopsis thaliana

text: laser dissected shoot apical meristems

text: shoot apical meristems

text: +1 long day (LD) A


text: live

text: Generic

text: after 1 LD induction

text: Arabidopsis thaliana

text: laser dissected shoot apical meristems

text: shoot apical meristems

text: +1 long day (LD) B


text: live

text: Generic

text: after 1 LD induction

text: Arabidopsis thaliana

text: laser dissected shoot apical meristems

text: shoot apical meristems

text: +1 long day (LD) C


text: live

text: Generic

text: after 3 LD induction

text: Arabidopsis thaliana

text: laser dissected shoot apical meristems

text: shoot apical meristems

text: +3 long day (LD) A


text: live

text: Generic

text: after 3 LD induction

text: Arabidopsis thaliana

text: laser dissected shoot apical meristems

text: shoot apical meristems

text: +3 long day (LD) B


text: live

text: Generic

text: after 3 LD induction

text: Arabidopsis thaliana

text: laser dissected shoot apical meristems

text: shoot apical meristems

text: +3 long day (LD) C


text: Dept. of Physiology, Chr. Hansen A/S

text: live

text: Generic

text: Streptococcus thermophilus

text: Streptococcus thermophilus


PRMT5(RNAi) Schmidtea mediterranea

text: live

text: Generic

text: Schmidtea mediterranea

text: Illumina sequencing of transcripts from Schmidtea mediterranea after PRMT5 RNAi


text: Laboratory of RNA Molecular Biology, Rockefeller University

text: live

text: Generic

characteristic: od 600 nm at harvest

text: Thermus thermophilus HB8

text: 19-35 nt

characteristic: size

text: Thermus thermophilus HB8

text: untreated

characteristic: treatment group

text: type strain of Thermus thermophilus

characteristic: type material


characteristic: External Id

text: live

text: Generic

text: Thermus thermophilus HB8

characteristic: organism

text: 19-35 nt

text: Thermus thermophilus HB8

characteristic: strain

text: treated

text: type strain of Thermus thermophilus


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Thermus thermophilus HB8

text: 35-50 nt

text: Thermus thermophilus HB8

characteristic: title

text: untreated

text: type strain of Thermus thermophilus


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Thermus thermophilus HB8

text: 35-50 nt

text: Thermus thermophilus HB8

text: treated

text: type strain of Thermus thermophilus


text: live

text: Generic

text: Thermus thermophilus HB8

text: 50-100 nt

text: Thermus thermophilus HB8

text: untreated

text: type strain of Thermus thermophilus


text: live

text: Generic

text: Thermus thermophilus HB8

text: 50-100 nt

text: Thermus thermophilus HB8

text: treated

text: type strain of Thermus thermophilus


text: LMI, NHLBI, NIH

text: live

text: Generic

characteristic: cell line

text: embryonic stem cells

characteristic: cell type

text: mES WT

characteristic: condition

text: Mus musculus

text: mouse ES cells, WT, H2A.Z ChIP


text: LMI, NHLBI, NIH

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: embryonic stem cells

text: mES WT

text: Mus musculus

text: mouse ES cells, WT, acetylated H2A.Z ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

characteristic: SRA accession

text: embryonic stem cells

text: shluc control for shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shluc control, H3K4me3 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shluc control for shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shluc control, H3K27me3 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shluc control for shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shluc control, RbBP5 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shluc control for shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shluc control, Suz12 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shluc control for shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shluc control, Benzonase


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shH2A.Z, H3K4me3 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shH2A.Z, H3K27me3 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shH2A.Z, RbBP5 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shH2A.Z, Suz12 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shH2A.Z, Benzonase


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shluc control for shMLL4 mES cells

text: Mus musculus


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shluc control for shMLL4 mES cells

text: Mus musculus

text: mouse ES cells, shluc control, H2A.Z ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shMLL4 mES cells

text: Mus musculus

text: mouse ES cells, shMLL4, H3K4me3 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shMLL4 mES cells

text: Mus musculus

text: mouse ES cells, shMLL4, H2A.Z ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shluc control for shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shluc control, MNase


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shH2A.Z, MNase


text: Systems Biology Center, NHLBI, NIH

text: live

text: Generic

text: embryoid bodies

text: mouse EB shluc control day3

text: Mus musculus

text: mouse embryoid bodies, shluc control, day3


text: Systems Biology Center, NHLBI, NIH

text: live

text: Generic

text: embryoid bodies

text: mouse EB shH2A.Z day3

text: Mus musculus

text: mouse embryoid bodies, shH2A.Z, day3


text: Systems Biology Center, NHLBI, NIH

text: live

text: Generic

text: embryoid bodies

text: mouse EB shluc control day7

text: Mus musculus

text: mouse embryoid bodies, shluc control, day7


text: Systems Biology Center, NHLBI, NIH

text: live

text: Generic

text: embryoid bodies

text: mouse EB shH2A.Z day7

text: Mus musculus

text: mouse embryoid bodies, shH2A.Z, day7


text: Systems Biology Center, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: RNA-Seq shluc control for H2A.Z knockdown or MLL4 knockdown

text: Mus musculus

text: mouse ES cells, shluc control


text: Systems Biology Center, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: RNA-Seq H2A.Z knockdown

text: Mus musculus

text: mouse ES cells, H2A.Z KD


text: Broad Institute

text: live

text: Generic

text: Bergeyella zoohelcum ATCC 43767

text: Bergeyella zoohelcum

characteristic: sample id

text: Genomic DNA

characteristic: sample type

text: ATCC 43767

text: ATCC 43767, CCUG 30536

characteristic: strains

text: Bergeyella zoohelcum ATCC 43767 Genomic DNA sample Bergeyella zoohelcum


PRJNA28331.Afipia broomeae

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Afipia broomeae ATCC 49717

characteristic: organism

text: Afipia broomeae

characteristic: sample name

text: ATCC 49717

text: Generic sample from Afipia broomeae ATCC 49717


PRJNA28331.Sphingobium yanoikuyae

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Sphingobium yanoikuyae ATCC 51230

text: Sphingobium yanoikuyae

text: ATCC 51230

characteristic: strain

text: Generic sample from Sphingobium yanoikuyae ATCC 51230

characteristic: title


PRJNA28331.Myroides odoratimimus

text: Broad Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Myroides odoratimimus CCUG 10230

text: Myroides odoratimimus

text: CCUG 10230

text: Generic sample from Myroides odoratimimus CCUG 10230


PRJNA28331.Massilia timonae

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Massilia timonae CCUG 45783

text: Massilia timonae

text: CCUG 45783

text: Generic sample from Massilia timonae CCUG 45783


text: hkust-kaust

text: live

text: Generic

characteristic: NCBI submission model

text: Tubeworms with sponges were collected in September 2009 using the manipulator arm of the Johnson Sea Link manned submersible at two different cold seep locations on the upper Louisiana slope in the Gulf of Mexico: Bush Hill (BH; 27o 47' N, 91o 30' 24W) and a site in the Green Canyon oil leasing block known as GC234 (27o 44.4'N, 91o 13.3'W). Both sites lie at approximately 550 m depth with an ambient temperature of ~7 oC and are about 28.5 km apart from one another. Tubeworms with sponges were recovered to the surface in a thermally stable acrylic box. Upon recovery, tubeworms and sponges were maintained alive in separate containers of filtered seawater at ambient temperature until sample processing.

characteristic: description

text: marine metagenome

text: microbial communities in sponge samples from Gulf of Mexico


text: NCB Naturalis

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Albinaria hippolyti

text: Albinaria hippolyti aphrodite - holtzi hybrid 1 (code 4147)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti

text: Albinaria hippolyti aphrodite - holtzi hybrid 2 (code 4156)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti aphrodite

text: Albinaria hippolyti aphrodite 1 (code 4172)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti holtzi

text: Albinaria hippolyti holtzi 1 (code 4178)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti holtzi

text: Albinaria hippolyti holtzi 2 (code 4180)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti holtzi

text: Albinaria hippolyti holtzi 3 (code 4181)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti aphrodite

text: Albinaria hippolyti aphrodite 2 (code 4488)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti holtzi

text: Albinaria hippolyti holtzi 4 (code 4179)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti holtzi

text: Albinaria hippolyti holtzi 5 (code 4176)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti aphrodite

text: Albinaria hippolyti aphrodite 3 (code 4173)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti aphrodite

text: Albinaria hippolyti aphrodite 4 (code 4171)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti aphrodite

text: Albinaria hippolyti aphrodite 5 (code 4170)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti

text: Albinaria hippolyti aphrodite - holtzi hybrid 3 (code 4158)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti

text: Albinaria hippolyti aphrodite - holtzi hybrid 4 (code 4157)


text: NCB Naturalis

text: live

text: Generic

text: Albinaria hippolyti

text: Albinaria hippolyti aphrodite - holtzi hybrid 5 (code 4154)


NutrientExperiment

text: Uppsala University, Department of Ecology and Genetics

text: live

text: Generic

text: uncultured bacterium

text: Bacterial and phytoplankton responses to nutrient amendments in a boreal lake at different taxonomic resolutions


text: George Palade Laboratories, CMM, UC San Diego

text: live

text: Generic

text: monoclonal anti-hnRNP U antibody (3G6)

characteristic: antibody

text: HeLa

characteristic: cell line

text: Homo sapiens

text: HeLa cells


characteristic: External Id

text: live

text: Generic

text: HeLa

text: Homo sapiens

text: HeLa cells

text: Control

characteristic: transfection


text: live

text: Generic

text: HeLa

text: Homo sapiens

characteristic: organism

text: HeLa cells

text: hnRNP U knockdown


text: ENCODE DCC

text: live

text: Generic

text: Lonza

characteristic: biomaterial provider

characteristic: biorep

text: mesoderm

characteristic: cell lineage

text: U

characteristic: cell sex

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: IDR

characteristic: labversion

text: cytosol

characteristic: localization

text: The fluid between the cells outer membrane and the nucleus

characteristic: localization description

text: Homo sapiens

characteristic: replicate

text: tier 3

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description

text: HUVEC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

text: mesoderm

text: U

text: Cage

text: CAGE 5' RNA Tags

text: IDR

text: nucleus

text: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA

text: Homo sapiens

text: tier 3

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: HUVEC

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: biorep

text: inner cell mass

characteristic: cell lineage

text: M

characteristic: cell sex

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: nucleus

text: Homo sapiens

characteristic: organism

characteristic: readtype

text: Single 36 nt reads

characteristic: readtype description

text: tier 2

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Lonza

text: mesoderm

text: U

text: Cage

text: CAGE 5' RNA Tags

text: IDR

characteristic: labversion

text: cell

characteristic: localization

text: Whole cell

characteristic: localization description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description

text: HUVEC


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: skin fibroblast, The line was established from skin taken from normal foreskin. - ATCC. (PMID: 9916803)

characteristic: cell description

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

text: IDR

text: cell

text: Whole cell

text: Homo sapiens

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: BJ

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: mesoderm

characteristic: cell lineage

text: F

characteristic: cell sex

text: Cage

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: bedtools v2.7.1,IDR

characteristic: labversion

text: Delve version 0.9

text: cytosol

text: Homo sapiens

characteristic: organism

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ATCC

text: ectoderm

text: F

text: Cage

text: CAGE 5' RNA Tags

text: IDR

text: cytosol

characteristic: localization

characteristic: localization description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: ectoderm

text: F

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

text: IDR

text: nucleus

text: Homo sapiens

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: F

characteristic: cell sex

text: Cage

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: nucleolus

text: The part of the nucleus where ribosomal RNA is actively transcribed

text: Homo sapiens

characteristic: organism

text: total

text: Total RNA extract (longer than 200 nt)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: ATCC

text: cancer

text: mesoderm

text: F

text: Cage

text: CAGE 5' RNA Tags

text: bedtools v2.7.1

characteristic: labversion

text: Delve version 0.9

text: chromatin

characteristic: localization

text: Nuclear DNA and associated proteins

characteristic: localization description

text: Homo sapiens

text: total

characteristic: rnaextract

text: Total RNA extract (longer than 200 nt)

characteristic: rnaextract description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: hepatocellular carcinoma

text: M

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

text: IDR

text: nucleus

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: M

characteristic: cell sex

text: Cage

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: IDR

text: cell

text: Whole cell

text: Homo sapiens

characteristic: organism

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ATCC

text: endoderm

characteristic: cell lineage

text: M

text: Cage

text: CAGE 5' RNA Tags

text: cell

characteristic: localization

text: Whole cell

characteristic: localization description

text: Homo sapiens

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description

text: bedtools v2.7.1

characteristic: softwareversion

text: Delve version 0.9

text: prostate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: cancer

characteristic: cell karyotype

text: mesoderm

text: F

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

text: nucleus

text: Homo sapiens

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: ATCC

text: mesoderm

text: F

characteristic: cell sex

text: Cage

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: IDR

characteristic: labversion

text: nucleus

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: ATCC

text: mesoderm

characteristic: cell lineage

text: F

text: Cage

text: CAGE 5' RNA Tags

text: bedtools v2.7.1,IDR

text: Delve version 0.9

text: cytosol

characteristic: localization

characteristic: localization description

text: Homo sapiens

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: cancer

characteristic: cell karyotype

text: mesoderm

text: F

characteristic: cell sex

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

text: bedtools v2.7.1

text: Delve version 0.9

text: nucleoplasm

text: That part of the nuclear content other than the chromosomes or the nucleolus

text: Homo sapiens

text: total

text: Total RNA extract (longer than 200 nt)

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: Coriell

characteristic: cell description

text: normal

text: mesoderm

text: F

text: Cage

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: nucleus

text: Homo sapiens

characteristic: organism

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: ATCC

text: ectoderm

characteristic: cell lineage

text: F

text: Cage

text: CAGE 5' RNA Tags

text: IDR

characteristic: labversion

text: cell

characteristic: localization

text: Whole cell

characteristic: localization description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: hepatocellular carcinoma

text: M

characteristic: cell sex

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

text: IDR

text: cytosol

text: Homo sapiens

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: M

text: Cage

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: nucleolus

text: Homo sapiens

characteristic: organism

text: total

text: Total RNA extract (longer than 200 nt)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: ATCC

text: hepatocellular carcinoma

text: endoderm

text: M

text: Cage

text: CAGE 5' RNA Tags

text: bedtools v2.7.1

characteristic: labversion

text: Delve version 0.9

text: nucleus

characteristic: localization

characteristic: localization description

text: Homo sapiens

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Lonza

characteristic: biomaterial provider

characteristic: biorep

text: normal

text: ectoderm

text: U

characteristic: cell sex

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

text: bedtools v2.7.1

text: Delve version 0.9

text: cytosol

text: Homo sapiens

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: NHEK

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Lonza

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: U

text: Cage

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: bedtools v2.7.1

text: Delve version 0.9

text: nucleus

text: Homo sapiens

characteristic: organism

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: NHEK


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Coriell

characteristic: cell description

text: F

text: Cage

text: CAGE 5' RNA Tags

text: IDR

characteristic: labversion

text: nucleus

characteristic: localization

characteristic: localization description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Coriell

characteristic: biomaterial provider

characteristic: biorep

text: F

characteristic: cell sex

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

text: IDR

text: cytosol

text: Homo sapiens

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Lonza

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: U

text: Cage

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: bedtools v2.7.1

characteristic: labversion

text: Delve version 0.9

text: cytosol

characteristic: localization

text: Homo sapiens

characteristic: organism

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: HUVEC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: endoderm

text: M

text: Cage

text: CAGE 5' RNA Tags

text: bedtools v2.7.1

text: Delve version 0.9

text: cytosol

characteristic: localization description

text: Homo sapiens

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Coriell

characteristic: biomaterial provider

characteristic: biorep

text: normal

text: mesoderm

text: F

characteristic: cell sex

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

text: nucleolus

text: Homo sapiens

text: total

text: Total RNA extract (longer than 200 nt)

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: ATCC

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: F

text: Cage

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: cytosol

characteristic: localization

text: Homo sapiens

characteristic: organism

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: bedtools v2.7.1

characteristic: softwareversion

text: bowtie version 0.12.5


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ATCC

text: cancer

text: mesoderm

text: F

text: Cage

text: CAGE 5' RNA Tags

text: bedtools v2.7.1

characteristic: labversion

text: Delve version 0.9

text: polysome

text: Strand of mRNA with ribosomes attached

characteristic: localization description

text: Homo sapiens

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: biorep

text: normal

text: inner cell mass

text: M

characteristic: cell sex

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

text: cell

text: Whole cell

text: Homo sapiens

text: longNonPolyA

text: Poly(A)- RNA longer than 200 nt

text: bedtools v2.7.1

text: Delve version 0.9

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: WiCell Research Institute

text: inner cell mass

characteristic: cell lineage

text: M

text: Cage

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: cytosol

characteristic: localization

text: Homo sapiens

characteristic: organism

characteristic: readtype

text: Single 36 nt reads

characteristic: readtype description

characteristic: replicate

text: tier 2

characteristic: replicate description

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: WiCell Research Institute

text: inner cell mass

text: M

text: Cage

text: CAGE 5' RNA Tags

text: IDR

characteristic: labversion

text: cell

text: Whole cell

characteristic: localization description

text: Homo sapiens

text: tier 1

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Coriell

characteristic: biomaterial provider

characteristic: biorep

text: endoderm

characteristic: cell lineage

text: M

characteristic: cell sex

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: IDR

text: cell

characteristic: localization

text: Whole cell

text: Homo sapiens

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ATCC

text: endoderm

text: M

text: Cage

text: CAGE 5' RNA Tags

text: IDR

text: cell

text: Whole cell

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: cancer

characteristic: cell karyotype

text: ectoderm

text: F

text: Cage

text: CAGE 5' RNA Tags

text: IDR

characteristic: labversion

text: cytosol

characteristic: localization description

text: Homo sapiens

text: longNonPolyA

characteristic: rnaextract

text: Poly(A)- RNA longer than 200 nt

characteristic: rnaextract description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: Lonza

text: F

characteristic: cell sex

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

characteristic: datatype description

characteristic: labexpid

text: IDR

text: Homo sapiens

characteristic: readtype

text: Single 36 nt reads

characteristic: readtype description

text: tier 3

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: NHEK

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: ectoderm

characteristic: cell lineage

text: F

text: Cage

text: CAGE 5' RNA Tags

text: IDR

text: cell

characteristic: localization

text: Whole cell

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: ATCC

characteristic: biorep

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

text: F

characteristic: cell sex

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

characteristic: datatype description

text: nucleolus

characteristic: localization description

text: Homo sapiens

text: total

characteristic: rnaextract

text: Total RNA extract (longer than 200 nt)

characteristic: rnaextract description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: mesoderm

characteristic: cell lineage

text: F

text: Cage

text: CAGE 5' RNA Tags

characteristic: labexpid

text: IDR

characteristic: labversion

text: cell

text: Whole cell

text: Homo sapiens

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: Lonza

characteristic: biorep

text: ectoderm

text: U

characteristic: cell sex

text: Cage

text: CAGE 5' RNA Tags

text: IDR

text: cytosol

characteristic: localization

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 3

characteristic: replicate description

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: NHEK


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Lonza

text: ectoderm

text: U

text: Cage

characteristic: datatype

text: CAGE 5' RNA Tags

characteristic: datatype description

text: IDR

text: cell

text: Whole cell

characteristic: localization description

text: Homo sapiens

text: tier 1

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description

text: NHEK


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Coriell

characteristic: biomaterial provider

characteristic: cell description

text: F

text: Cage

text: CAGE 5' RNA Tags

characteristic: labexpid

text: IDR

characteristic: labversion

text: cell

text: Whole cell

text: Homo sapiens

text: tier 1

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


text: Institute of Cellular and Organismic Biology, Academia Sinica

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Danio rerio

characteristic: organism

text: zebrafish liver

text: AB

characteristic: strain

text: liver

characteristic: tissue

text: mRNA from AB strain


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Danio rerio

text: zebrafish liver

text: HBx transgenic

text: liver

text: mRNA from HBx transgenic line


characteristic: External Id

text: live

text: Generic

text: Danio rerio

text: zebrafish liver

text: HCP transgenic

text: liver

text: mRNA from HCP transgenic line


characteristic: INSDC center name

text: live

text: Generic

text: Danio rerio

text: intrahepatic cholangiocarcinoma

characteristic: phenotype

text: zebrafish liver

text: HBx+HCP transgenic

text: liver

text: mRNA from HBx+HCP transgenic line


text: Institut Pasteur

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: cell line

text: Homo sapiens

text: human fibroblast

text: Endogenous small RNAs from human senescent fibroblast WI-38


text: Institut Pasteur

text: live

text: Generic

text: pan AGO

characteristic: antibody

text: Upstate

characteristic: antibody vendor

text: Homo sapiens

text: human fibroblast

text: immunoprecipitating small RNA with an antibody againt AGO proteins from human senescent fibroblast WI-38


text: Institut Pasteur

text: live

text: Generic

text: Upstate

text: Homo sapiens

text: human fibroblast

text: immunoprecipitating small RNA with an antibody againt H3K9me2 proteins from human senescent fibroblast WI-38

characteristic: title


text: Kansas State University

characteristic: INSDC first public

text: live

text: Generic

text: Triticum aestivum


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC last update

text: live

text: Generic

text: Escherichia coli EC1734

text: Escherichia coli EC1734


text: Institute of Genetics and Developmental Biology Chinese Academy of Sciences

characteristic: INSDC secondary accession

text: live

text: Generic

text: 3-5 weeks

characteristic: age

text: mixed

characteristic: developmental stage

text: Columbia-0 (Col-0)

characteristic: ecotype background

text: wild type

characteristic: genotype

text: Arabidopsis thaliana

text: wild type, 3-5week seedlings, treated with JA

text: seedlings

text: Endogenous small RNAs from A. thaliana Col-0, WT, 3-5week seedlings, treated with 100 µM MeJA solution for 8, 16, 24h

text: jasmonate (JA)

characteristic: treatment


characteristic: External Id

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 3-5 weeks

text: mixed

text: Columbia-0 (Col-0)

text: aos mutant

text: Arabidopsis thaliana

characteristic: organism

text: aos mutant, 3-5week seedlings

text: seedlings

characteristic: tissue

text: Endogenous small RNAs from A. thaliana Col-0, aos mutant, 3-5week seedlings


text: LSBM, RCAST

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Human umbilical vein endothelial cells

characteristic: cell type

text: PolII (S2, S5 in CTD were both phosphorylated)

characteristic: chip antibody

text: Homo sapiens

text: within 6 passage

characteristic: passage

text: HUVEC_PolII_TNF00min_ChIP seq


text: LSBM, RCAST

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Human umbilical vein endothelial cells

text: Homo sapiens

text: within 6 passage

text: HUVEC_PolII_10 ng/ml_TNF_30min

text: HUVEC_PolII_TNF30min_ChIP seq

characteristic: title


text: LSBM, RCAST

text: live

text: Generic

text: Human umbilical vein endothelial cells

text: abcam

characteristic: chip antibody vendor

text: Homo sapiens

text: within 6 passage

text: HUVEC_p65_TNF00min_ChIP seq


text: LSBM, RCAST

text: live

text: Generic

text: Human umbilical vein endothelial cells

text: abcam

text: Homo sapiens

text: within 6 passage

text: HUVEC_p65_10 ng/ml_TNF_30min

text: HUVEC_p65_TNF30min_ChIP seq


text: Brigham Young University DNA Sequencing Center -Udall Lab

text: live

text: Generic

text: Whole genome DNA samples were extracted using a modified CTAB protocol. Twelve samples were tagged with multiplex identifiers (MIDs), each with a different MID. They were idependently hybridized to a custom Nimblegen Sequence Capture Array (12-plex). After washing, the samples were all eluted into a single tube and subjected to ligation-mediated PCR (i.e. PCR using the 454 sequence adapters) to amplify the captured fragments to a high enough concentration for sequencing. Subsequently, the libraries were prepared for 454 sequencing (size selection on a Capliper XL, emPCR, and bead preparation etc.). The twelve captured samples tagged with multiplex identifiers (MIDs) were run on a single plate (2 large regions) of 454. The samples were prepared using 'traditional' WGS libraries from Roche. Below is a list of the samples and MIDs included in this run. Sample Name MID MID Forward Sequence (in that order) TX_704 1 ACGAGTGCGT; TX_786 2 ACGCTCGACA; TX_953 3 AGACGCACTC; TX_1009 4 AGCACTGTAG; TX_1055 5 ATCAGACACG; TX_665 6 ATATCGCGAG; TX_2089 7 CGTGTCTCTA; TX_1037 8 CTCGCGTGTC; TX_672 9 TAGTATCAGC; TX_1107 10 TCTCTATGCG; TX_480 11 TGATACGTCT; TX_1748 12 TACTGAGCTA

characteristic: description

text: Gossypium hirsutum


characteristic: External Id

text: live

text: Generic

text: Whole genome DNA samples were extracted using a modified CTAB protocol. Twelve samples were tagged with multiplex identifiers (MIDs), each with a different MID. They were idependently hybridized to a custom Nimblegen Sequence Capture Array (12-plex). After washing, the samples were all eluted into a single tube and subjected to ligation-mediated PCR (i.e. PCR using the 454 sequence adapters) to amplify the captured fragments to a high enough concentration for sequencing. Subsequently, the libraries were prepared for 454 sequencing (size selection on a Capliper XL, emPCR, and bead preparation etc.). The twelve captured samples tagged with multiplex identifiers (MIDs) were run on a single plate (2 large regions) of 454. The samples were prepared using 'traditional' WGS libraries from Roche. Below is a list of the samples and MIDs included in this run. Sample Name MID MID Forward Sequence (in that order) Sample Name MID MID Forward Sequence TX_1182 1 ACGAGTGCGT; TX_44 2 ACGCTCGACA; TX_959 3 AGACGCACTC; TX_1110 4 AGCACTGTAG; TX_1120 5 ATCAGACACG; TX_1226 6 ATATCGCGAG; TX_1228 7 CGTGTCTCTA; TX_674 8 CTCGCGTGTC; TX_1046 9 TAGTATCAGC; TX_1982 10 TCTCTATGCG; TX_1236 11 TGATACGTCT; TX_1996 12 TACTGAGCTA;

text: Gossypium hirsutum