characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: small RNA

text: DR-GFP/U2OS cells

text: human DR-GFP/U2OS cells that were transfected with pCBASce plasmid and collected at 12 h post-transfection

text: transfected with pCBASce plasmid and collected at 12 h post-transfection.


status: PUBLIC

characteristic: External Id

text: Yijun Qi's lab, National Institute of Biological Sciences

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

text: Homo sapiens

characteristic: organism

text: small RNA

characteristic: rna

text: DR-GFP/U2OS cells

text: human DR-GFP/U2OS cells that were transfected with pCBASce plasmid and collected at 16 h post-transfection

characteristic: title

text: transfected with pCBASce plasmid and collected at 16 h post-transfection.

characteristic: treatment


text: live

text: Generic

text: Homo sapiens

text: small RNA

text: DR-GFP/U2OS cells

text: human DR-GFP/U2OS cells that were transfected with pCBASce plasmid and collected at 20 h post-transfection

text: transfected with pCBASce plasmid and collected at 20 h post-transfection.


text: live

text: Generic

text: Homo sapiens

text: small RNA

text: DR-GFP/U2OS cells

text: human DR-GFP/U2OS cells that were transfected with pCBASce plasmid and collected at 24 h post-transfection

text: transfected with pCBASce plasmid and collected at 24 h post-transfection.


text: live

text: Generic

text: Homo sapiens

text: small RNA

text: DR-GFP/U2OS cells

text: human DR-GFP/U2OS cells that were transfected with a control plasmid and collected at 20 h post-transfection

text: transfected with a plasmid having the same vector backbone but missing I-SceI and collected at 20 h post-transfection as control.


text: Bioinformatics, Evolution and Comparative Genomics, Molecular Biosciences and Biotechnology, Università degli Studi di Milano

text: live

text: Generic

characteristic: experiment

text: Pseudomonas aeruginosa PAO1

text: 40-520 nt adapter ligated RNA

characteristic: size selection

text: Pseudomonas aeruginoasa PAO1 cDNA

characteristic: strain


characteristic: INSDC first public

text: live

text: Generic

text: Pseudomonas aeruginosa PAO1

text: 150-520 nt adapter ligated RNA

text: Pseudomonas aeruginoasa PAO1 cDNA


characteristic: INSDC last update

text: live

text: Generic

text: Pseudomonas aeruginosa PA14

text: 40-520 nt adapter ligated RNA

text: Pseudomonas aeruginoasa PA14 cDNA


text: live

text: Generic

text: Pseudomonas aeruginosa PA14

text: 150-520 nt adapter ligated RNA

text: Pseudomonas aeruginoasa PA14 cDNA


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Escherichia coli

characteristic: sample name

text: Generic sample from Escherichia coli


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: unclassified sequences

text: Generic sample from unclassified sequences


PRJNA85559.ERP 1_frag_Ctrl

text: Broad Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: unclassified sequences

text: ERP 1_frag_Ctrl


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: Generic sample from Prochlorococcus marinus subsp. pastoris str. CCMP1986


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Prochlorococcus marinus subsp. pastoris str. CCMP1986

characteristic: organism


text: Broad Institute

text: live

text: Generic

text: Generic

text: Cereibacter sphaeroides 2.4.1

text: Generic sample from Rhodobacter sphaeroides 2.4.1

characteristic: title

text: type strain of Rhodobacter sphaeroides

characteristic: type material


text: Rockefeller University

text: live

text: Generic

text: Fibroblasts from day 13.5 embryos immortalized with SV40-LTA

characteristic: cell type

characteristic: chip antibody

text: Wild-type

characteristic: genotype

characteristic: lot

text: Mus musculus

text: Passaged 12-15 times

characteristic: passages

text: MEF

text: Abcam (ab1220)

characteristic: vendor


text: Rockefeller University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Splenic dendritic cells

text: G9a f/f; Vav-cre

text: Mus musculus

text: Ex-vivo isolated

text: DC

characteristic: strain

text: Abcam (ab1220)


characteristic: External Id

text: Rockefeller University

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: Splenic dendritic cells

text: G9a f/f

text: Mus musculus

text: Ex-vivo isolated

text: DC

text: Abcam (ab1220)


text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: culture-collection

text: Zasmidium cellare ATCC 36951

characteristic: description

text: Zasmidium cellare ATCC 36951

characteristic: sample number

text: ATCC 36951

text: Generic sample from Zasmidium cellare ATCC 36951

text: culture from neotype of Zasmidium cellare


text: University of Iowa

text: live

text: Generic

characteristic: SRA accession

text: Santa Cruz

characteristic: antibody vendor

characteristic: cell line

text: TFAP2C monoclonal antibody

characteristic: chip antibody

text: Homo sapiens

characteristic: organism

text: MCF-7, TFAP2C ChIP

text: MCF-7 TFAP2C

characteristic: title


text: University of Iowa

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Santa Cruz

text: TFAP2C monoclonal antibody

text: Homo sapiens

text: BT-474, TFAP2C ChIP

text: BT-474 TFAP2C


characteristic: External Id

text: University of Iowa

text: live

text: Generic

text: Santa Cruz

text: TFAP2C monoclonal antibody

text: Homo sapiens

text: MDA-MB-453, TFAP2C ChIP

text: MDA-MB-453 TFAP2C


text: University of Iowa

characteristic: INSDC center name

text: live

text: Generic

text: Santa Cruz

text: TFAP2C monoclonal antibody

text: Homo sapiens

text: SKBR-3, TFAP2C ChIP

text: SKBR-3 TFAP2C


text: Godley, Medicine, The University of Chicago

characteristic: INSDC secondary accession

text: live

text: Generic

text: GFP

characteristic: expressed genes

text: Homo sapiens

text: Neuroblastoma cell line (LA1-55n)

text: LA1-55n Vector Control


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: Neuroblastoma cell line (LA1-55n)

text: LA1-55n DNMT3B7 16


text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: Neuroblastoma cell line (LA1-55n)

text: LA1-55n DNMT3B7 54


text: Cornell University

text: live

text: Generic

text: embryonic day 33

characteristic: developmental stage

text: male

characteristic: gender

text: Equus caballus

text: horse_embryonic day33_chorionic girdle

text: invasive trophoblast tissue of the chorionic girdle

characteristic: tissue


text: Cornell University

text: live

text: Generic

characteristic: SRA accession

text: embryonic day 34

text: female

text: Equus caballus

text: horse_embryonic day34_chorionic girdle


text: Cornell University

text: live

text: Generic

text: embryonic day 33

text: male

text: Equus asinus

text: donkey_embryonic day33_chorionic girdle


text: Cornell University

text: live

text: Generic

text: embryonic day 33

text: female

text: Equus asinus

text: donkey_embryonic day33_chorionic girdle


text: Cornell University

text: live

text: Generic

text: embryonic day 33

text: male

text: Equus asinus x Equus caballus

text: mule_embryonic day33_chorionic girdle


text: Cornell University

text: live

text: Generic

text: embryonic day 33

text: female

text: Equus asinus x Equus caballus

text: mule_embryonic day33_chorionic girdle


text: Cornell University

text: live

text: Generic

text: embryonic day 33

text: male

text: Equus caballus x Equus asinus

text: hinny_embryonic day33_chorionic girdle


text: Kazusa DNA Research Institute

text: live

text: Generic

text: Eucalyptus camaldulensis

text: leaf (dark treated)

characteristic: tissue-type

text: Eucalyptus camaldulensis leaf (dark treated)


text: Kazusa DNA Research Institute

text: live

text: Generic

text: Eucalyptus camaldulensis

text: shoot (dark treated)

text: Eucalyptus camaldulensis shoot (dark treated)


text: Kazusa DNA Research Institute

text: live

text: Generic

text: Eucalyptus camaldulensis

text: root

text: Eucalyptus camaldulensis root


text: Kazusa DNA Research Institute

text: live

text: Generic

text: Eucalyptus camaldulensis

text: shoot (no dark treated)

text: Eucalyptus camaldulensis shoot (no dark treated)


text: Kazusa DNA Research Institute

text: live

text: Generic

text: Eucalyptus camaldulensis

text: mixture of leaf, stem and root

text: Eucalyptus camaldulensis mixture of leaf, stem and root


text: Kazusa DNA Research Institute

text: live

text: Generic

text: Eucalyptus camaldulensis

text: leaf

text: Eucalyptus camaldulensis leaf


text: Kazusa DNA Research Institute

text: live

text: Generic

text: Eucalyptus camaldulensis

text: stem

text: Eucalyptus camaldulensis stem


text: Dept. of Biology and Medicine Science, Paichai University

text: live

text: Generic

text: Hamcho

characteristic: cultivar

text: The cDNAs were cloned into pSMART2IFD Linearized Vector (Clontech) and random clones selected for end sequence verification.

characteristic: description

text: before flowering stage

characteristic: dev-stage

text: PCU

characteristic: lab-host

text: mature plant

characteristic: organ

text: Salicornia europaea

text: Mature plant cDNA library SAYSH

text: pSMART2IFD Linearized Vector (Clontech)

characteristic: vector


characteristic: External Id

text: Hunan Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Macleaya cordata growing leaves in September. EST sequences from the same plant of M. cordata for transcriptome and assessed the assembled unigenes from it

text: developmental stage

text: leaves

text: Macleaya cordata

characteristic: organism

text: hermaphrodite

characteristic: sex

text: Macleaya cordata growing leaves library

characteristic: title


30-h Cocoa Bean Fermentation Sample

text: Vrije Universiteit Brussel

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: A spontaneous cocoa bean box fermentation was performed in Ilh*us (Bahia, Brazil). A sample of 500 g was taken 30 h after the start of the fermentation. Whole-community metagenomic DNA was isolated in triplicate, each time from 20 g of the sample.

text: food metagenome

text: 30-h Cocoa Bean Fermentation Sample


Attine ant microbiome

text: University of Copenhagen

text: live

text: Generic

characteristic: SRA accession

text: Cuticle fragments of 59 samples of attine ants for the analysis of cuticular bacterial communities. 454 amplification of 16S rDNA region V3-V4

text: ant metagenome

text: Cuticular bacteria of attine ants


cfmicrobiome

text: University of Michigan

text: live

text: Generic

text: data files will include following samples: Sample Description_PatientID Descrition_Timepoints Barcode Runs sample1 Patient S1 1 TGACGA SRR442038 sample2 Patient S1 2 ACAAGG SRR442038 sample3 Patient S1 3 ATACCA SRR442038 sample4 Patient S1 4 TCGCGG SRR442038 sample5 Patient S1 5 ATCTTA SRR442038 sample6 Patient S1 6 AACCAG SRR442038 sample7 Patient S1 7 TTCGAG SRR442038 sample8 Patient S1 8 TCTTGG SRR442038 sample9 Patient S1 9 TAATCT SRR442038 sample10 Patient S1 10 TCACCT SRR442038 sample11 Patient S1 11 TCCGCT SRR442038 sample12 Patient S1 12 TATTGA SRR442038 sample13 Patient S1 13 AGTCGA SRR442038 sample14 Patient S1 14 ACGGCT SRR442038 sample15 Patient S1 15 TGCGTT SRR442038 sample16 Patient S1 16 TCTCGA SRR442038 sample17 Patient S1 17 CCAGGA SRR442038 sample18 Patient S1 18 ACTCCT SRR442038 sample19 Patient S1 19 TTCCTG SRR442038 sample20 Patient S1 20 TTCATA SRR442038 sample21 Patient S1 21 CGTCGT SRR442038 sample22 Patient S1 22 AAGGCA SRR442038 sample23 Patient S1 23 AACAACT SRR442038 sample24 Patient S2 1 ACACGGA SRR442038 sample25 Patient S2 2 TGCCGAA SRR442038 sample26 Patient S2 3 TATTCGT SRR442038 sample27 Patient S2 4 TAGGAAT SRR442038 sample28 Patient S2 5 CCGGCCA SRR442038 sample29 Patient S2 6 AATGGTA SRR442038 sample30 Patient S2 7 TCTCCGT SRR442038 sample31 Patient S2 9 AACCTGG SRR442038 sample32 Patient S2 10 ACGAAGT SRR442038 sample33 Patient S2 11 TTCGTGG SRR442038 sample34 Patient S2 12 AACACAA SRR442038 sample35 Patient S2 13 TTCTTGA SRR442038 sample36 Patient S2 14 TCCAAGT SRR442038 sample37 Patient P1 1 AGGTTGT SRR442038 sample38 Patient P1 2 ACGAGAA SRR442038 sample39 Patient P1 15 TGGTGAA SRR442038 sample40 Patient P1 18 TCGTTGT SRR442038 sample41 Patient P1 20 TTGTGTT SRR442038 sample42 Patient P2 1 CCACGGT SRR442038 sample43 Patient P2 2 TTGGAGG SRR442038 sample44 Patient P2 3 TTATCGG SRR442038 sample45 Patient P2 27 AAGAAGA SRR442038 sample46 Patient P2 28 AACTGTT SRR442038 sample47 Patient P3 1 TTCTCAA SRR442038 sample48 Patient P3 2 CTTCCTT SRR442038 sample49 Patient P3 3 ATTCGTA SRR442038 sample50 Patient P3 4 CCTTCCG SRR442038 sample51 Patient P3 5 AGTCCGT SRR442038 sample52 Patient P3 6 TTGAACT SRR442038 sample53 Patient P3 22 AACGAGG SRR442038 sample54 Patient P3 23 CCGTTCA SRR442038 sample55 Patient P3 24 ACCGGAAG SRR442038 sample56 Patient S3 1 CACG SRR442037 sample57 Patient S3 2 CGCAA SRR442037 sample58 Patient S3 3 TGAAG SRR442037 sample59 Patient S3 4 ACTTG SRR442037 sample60 Patient S3 5 TCACA SRR442037 sample61 Patient S3 6 CGTGA SRR442037 sample62 Patient S3 7 ACGCG SRR442037 sample63 Patient S3 8 CCTCT SRR442037 sample64 Patient S3 9 ACTCA SRR442037 sample65 Patient S3 10 AGACA SRR442037 sample66 Patient S3 12 AGCTT SRR442037 sample67 Patient S3 13 AAGCCG SRR442037 sample68 Patient P3 7 TTCATA SRR442037 sample69 Patient P3 8 CGTCGT SRR442037 sample70 Patient P3 12 ACACGGA SRR442037 sample71 Patient P3 13 TGCCGAA SRR442037 sample72 Patient P3 15 TAGGAAT SRR442037 sample73 Patient P3 16 CCGGCCA SRR442037 sample74 Patient P3 17 AATGGTA SRR442037 sample75 Patient P3 18 TCTCCGT SRR442037 sample76 Patient P3 19 AACCTGG SRR442037 sample77 Patient P3 20 ACGAAGT SRR442037 sample78 Patient P3 21 TTCGTGG SRR442037 sample79 Patient P3 25 AACACAA SRR442037 sample80 Patient P3 26 TTCTTGA SRR442037 sample81 Patient P2 4 TCCAAGT SRR442037 sample82 Patient P2 5 TTCGCGA SRR442037 sample83 Patient P2 6 CCGGTCG SRR442037 sample84 Patient P2 7 ACCTGAA SRR442037 sample85 Patient P2 8 AAGAGTT SRR442037 sample86 Patient P2 9 TTGACAA SRR442037 sample87 Patient P2 10 TCCAGAA SRR442037 sample88 Patient P2 11 CGGTCTT SRR442037 sample89 Patient P2 12 AAGGCCT SRR442037 sample90 Patient P2 13 ACTAATT SRR442037 sample91 Patient P2 14 TGACCGT SRR442037 sample92 Patient P2 15 TGTCGGA SRR442037 sample93 Patient P2 17 ACGAGAA SRR442037 sample94 Patient P2 18 TGGTGAA SRR442037 sample95 Patient P2 19 TCGTTGT SRR442037 sample96 Patient P2 20 TTGTGTT SRR442037 sample97 Patient P2 21 CCACGGT SRR442037 sample98 Patient P2 22 TTGGAGG SRR442037 sample99 Patient P2 23 TTATCGG SRR442037 sample100 Patient P2 24 AAGAAGA SRR442037 sample101 Patient P2 25 AACTGTT SRR442037 sample102 Patient P2 26 TTCTCAA SRR442037 sample103 Patient P2 29 CTTCCTT SRR442037 sample104 Patient P2 30 ATTCGTA SRR442037 sample105 Patient P1 3 CCTTCCG SRR442037 sample106 Patient P1 4 AGTCCGT SRR442037 sample107 Patient P1 5 TTGAACT SRR442037 sample108 Patient P1 6 AACGAGG SRR442037 sample109 Patient P1 7 CCGTTCA SRR442037 sample110 Patient P1 8 TCGAGGAA SRR442037 sample111 Patient P1 9 ACCGGAAG SRR442037 sample112 Patient P1 10 ACGTTCCA SRR442037 sample113 Patient P1 11 AACGGAGT SRR442037 sample114 Patient P1 12 TTCGTTAT SRR442037 sample115 Patient P1 13 ACCTTGGT SRR442037 sample116 Patient P1 14 TTAAGATT SRR442037 sample117 Patient P1 16 TGGTTGGT SRR442037 sample118 Patient P1 17 TGTCCGGT SRR442037 sample119 Patient P1 19 AACCGTGT SRR442037 sample120 Patient S2 8 TGTCCGGT SRR442039 sample121 Patient P3 9 TTCTCAAC SRR442040 sample122 Patient P3 10 CTTCCTTC SRR442040 sample123 Patient P3 11 ATTCGTAC SRR442040 sample124 Patient P3 14 CCTTCCGC SRR442040 sample125 Patient S3 11 AAGAAGAC SRR442040 sample126 Patient P2 16 AACTGTTC SRR442040

characteristic: description

text: human lung metagenome

text: Decade-long bacterial community dynamics in cystic fibrosis airways


text: Max-Planck Institute of Immunobiology and Epigenetics

text: live

text: Generic

characteristic: cell line

text: H1.4K34ac rabbit polyclonal made in-house

characteristic: chip antibody

text: Homo sapiens

text: human breast adenocarcinoma

characteristic: source

text: H1.4K34ac ChIP-Seq


text: live

text: Generic

text: no antibody control

text: Homo sapiens

text: human breast adenocarcinoma

text: control IP


Rice SNP Consortium - Bala

text: Cornell University

text: live

text: Generic

text: BALA is a improved variety produced by Central Rice Research Institute, Cuttack India in the late 1970’s from a cross between the aus variety, N22, and the indica variety, TN1. It was released as a variety for upland cultivation in the mid 1980’s.

text: Oryza sativa Indica Group

text: BALA-AP (IRGC 12884) or (CR 42-38)


text: Microbiology and Immunobiology, Harvard Medical School

text: live

text: Generic

text: El Tor

characteristic: biotype

text: Monoclonal Anti-V5 antibody produced in mouse

text: Sigma

characteristic: chip antibody vendor

text: ToxT deletant expressing ToxT from pBAD18-Cm

characteristic: genotype/variation

text: Vibrio cholerae O1 str. C6706

characteristic: strain

characteristic: strain background


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: El Tor

text: Vibrio cholerae O1 str. C6706

characteristic: organism


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: El Tor

text: ToxT deletant carrying empty plasmid pBAD18-Cm

text: Vibrio cholerae O1 str. C6706

characteristic: title


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: El Tor

text: wild type Vibrio cholerae El Tor strain C6706 expressing ToxT from pBAD18-Cm

text: Vibrio cholerae O1 str. C6706


text: live

text: Generic

text: El Tor

text: tarB deletant expressing ToxT from pBAD18-Cm

text: Vibrio cholerae O1 str. C6706


text: live

text: Generic

text: El Tor

text: dncV (VC0179) deletant carrying empty plasmid pBAD18-Cm

text: Vibrio cholerae O1 str. C6706


text: live

text: Generic

text: El Tor

text: dncV (VC0179) deletant expressing DncV from pBAD18-Cm

text: Vibrio cholerae O1 str. C6706


text: Wilhelmina Children's Hospital, University Medical Center Utrecht

text: live

text: Generic

text: anti-RNAPII

characteristic: antibody

text: Ls174T human colon cancer cells

characteristic: cell type

text: Homo sapiens

text: Euromedex

characteristic: vendor

text: on

characteristic: wnt suppression


text: live

text: Generic

text: anti-RNAPII

text: Ls174T human colon cancer cells

text: Homo sapiens

text: Euromedex

text: off


text: live

text: Generic

text: Ls174T human colon cancer cells

text: Homo sapiens

text: on


text: live

text: Generic

text: Ls174T human colon cancer cells

text: Homo sapiens

text: off


text: Victor Corces, Biology, Emory University

text: live

text: Generic

characteristic: cell line

text: Female late embryo derived cell line

characteristic: cell line source

text: Drosophila melanogaster

text: Kc167 cells


characteristic: External Id

text: Institute for Diabetes, Obesity, and Metabolism, University of Pennsylvania

text: live

text: Generic

text: 8-12 weeks

characteristic: age

text: Covance

characteristic: antibody vendor

text: Rev-erb(beta)

characteristic: chip antibody

text: male

characteristic: gender

text: WT

characteristic: genotype/variation

text: Mus musculus

text: Homogenized mouse liver, WT, 5pm/ZT10, Rev-erb(beta) ChIP

characteristic: strain

characteristic: time

text: liver

characteristic: tissue


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 8-12 weeks

text: Covance

text: Rev-erb(beta)

text: male

text: WT

text: Mus musculus

characteristic: organism

text: Homogenized mouse liver, WT, 5am/ZT22, Rev-erb(beta) ChIP

text: liver

characteristic: title


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: 8-12 weeks

characteristic: age

text: Cell Signalling

text: Rev-erb(alpha)

text: male

text: Rev-erb(alpha) KO

text: Mus musculus

text: Homogenized mouse liver, Rev-erb(alpha) KO, 5pm/ZT10, Rev-erb(alpha) ChIP

text: liver


text: Plant Science Center, RIKEN

text: live

text: Generic

text: anti-GFP

characteristic: chip antibody

text: Arabidopsis thaliana

text: 10 hr after light on

text: Whole plant


text: Plant Science Center, RIKEN

text: live

text: Generic

text: input

text: Arabidopsis thaliana

text: 10 hr after light on

text: Whole plant

text: input


text: Institute For Genetics, CECAD, University of Cologne

text: live

text: Generic

text: 3rd instar larvae

characteristic: developmental stage

text: male

characteristic: gender

text: y w

characteristic: genotype

text: Drosophila melanogaster

text: control

characteristic: sample type

text: whole larvae, y w

text: whole body


characteristic: INSDC center name

text: live

text: Generic

text: 3rd instar larvae

text: male

text: y w, atf3[76]

text: Drosophila melanogaster

text: experimental

text: whole larvae, y w, atf3[76]

text: whole body

characteristic: tissue


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: 3rd instar larvae

text: male

text: y w, atf3[76];;dfoxo[25J13]/+

text: Drosophila melanogaster

text: experimental

text: whole larvae, y w, atf3[76];;dfoxo[25J13]/+

text: whole body


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 3rd instar larvae

text: male

text: y w, atf3[76];;rel[E20]/+

text: Drosophila melanogaster

text: experimental

text: whole larvae, y w, atf3[76];;rel[E20]/+

text: whole body


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 3rd instar larvae

text: male

text: y w, atf3[76];;atf3[A]/+

text: Drosophila melanogaster

text: experimental

text: whole larvae, y w, atf3[76];;atf3[A]/+

text: whole body


Rice SNP Consortium - Azucena

text: Cornell University

text: live

text: Generic

text: AUCENA is a traditional, aromatic, upland rice cultivar from the Philippines

characteristic: description

text: Oryza sativa Japonica Group

characteristic: organism

text: Azucena

characteristic: title


characteristic: External Id

text: Biochmemistry and Mol. Genetics, U. Colorado School of Medicine

text: live

text: Generic

characteristic: SRA accession

text: HeLa

characteristic: cell line

text: Cells were grown in DMEM 10% FCS.

characteristic: growth protocol

text: Homo sapiens

text: HeLa, input

text: Hela input chromatin


text: live

text: Generic

text: HeLa

text: sheep anti-TTF2

characteristic: chip antibody

text: Cells were grown in DMEM 10% FCS.

text: Homo sapiens

text: HeLa, TTF2 ChIP

text: TTF2 ChIP-Seq (antibody 1)


text: live

text: Generic

text: Proteintech

characteristic: antibody vendor

text: HeLa

text: rabbit anti-TTF2

text: Cells were grown in DMEM 10% FCS.

text: Homo sapiens

text: HeLa, TTF2 ChIP

text: TTF2 ChIP-Seq (antibody 2)


characteristic: INSDC center name

text: live

text: Generic

text: HeLa

text: rabbit anti-Xrn2

text: Cells were grown in DMEM 10% FCS.

text: Homo sapiens

text: HeLa, Xrn2 ChIP

text: Xrn2 ChIP-Seq


text: live

text: Generic

text: HeLa

text: rabbit anti-Dcp1a

text: Cells were grown in DMEM 10% FCS.

text: Homo sapiens

text: HeLa, Dcp1a ChIP

text: Dcp1a ChIP-Seq


text: live

text: Generic

text: rabbit anti-pan CTD

text: Cells were grown in DMEM 10% FCS.

text: Homo sapiens

text: HEK293, RNA pol II ChIP

text: RNA pol II ChIP-Seq parent control


text: live

text: Generic

text: rabbit anti-pan CTD

text: Cells were grown in DMEM 10% FCS + puromycin.

text: Homo sapiens

text: scrambled

characteristic: shrna

text: HEK293, scrambled shRNA, RNA pol II ChIP

text: RNA pol II ChIP-Seq scr shRNA control


characteristic: INSDC first public

text: live

text: Generic

text: rabbit anti-pan CTD

text: Homo sapiens

text: HEK293, TTF2 shRNA, RNA pol II ChIP

text: RNA pol II ChIP-Seq TTF2 shRNA


characteristic: INSDC last update

text: live

text: Generic

text: rabbit anti-pan CTD

text: Homo sapiens

text: HEK293, Xrn2 shRNA, RNA pol II ChIP

text: RNA pol II ChIP-Seq Xrn2 shRNA


characteristic: INSDC secondary accession

text: live

text: Generic

text: rabbit anti-pan CTD

text: Cells were grown in DMEM 10% FCS + puromycin + G418.

text: Homo sapiens

text: HEK293, TTF2+Xrn2 shRNA, RNA pol II ChIP

text: RNA pol II ChIP-Seq TTF2+Xrn2 shRNA


text: live

characteristic: INSDC status

text: Generic

text: rabbit anti-pan CTD

text: Homo sapiens

text: HEK293, Edc3 shRNA, RNA pol II ChIP

text: RNA pol II ChIP-Seq Edc3 shRNA


text: live

text: Generic

characteristic: NCBI submission model

text: rabbit anti-pan CTD

text: Homo sapiens

text: HEK293, Dcp1a shRNA, RNA pol II ChIP

text: RNA pol II ChIP-Seq Dcp1a shRNA


text: live

text: Generic

characteristic: NCBI submission package

text: rabbit anti-pan CTD

text: Homo sapiens

text: HEK293, Dcp2 shRNA, RNA pol II ChIP

text: RNA pol II ChIP-Seq Dcp2 shRNA


text: University of New Hampshire

text: live

text: Generic

text: Reciprocal representational difference analysis cDNA libraries constructed between mid and late vitellogenic stage ovarian follicles.

characteristic: description

text: mid and late vitellogenic 1.5-2.0 year old cod

characteristic: dev-stage

text: ovary

characteristic: organ

text: Gadus morhua

text: female

characteristic: sex

text: whole ovarian tissue

characteristic: tissue-type

text: Atlantic cod mid and late vitellogenic intact ovarian follicle representational difference analysis libraries

text: Phagemid

text: pBluescript SK+

characteristic: vector


characteristic: External Id

text: University of New Hampshire

text: live

text: Generic

text: Reciprocal representational difference analysis cDNA libraries constructed between mid and late vitellogenic stage tissues enriched for follicle cell level transcripts.

text: ovary

text: Gadus morhua

characteristic: organism

text: female

text: follicle cell-enriched ovarian tissues

text: Atlantic cod mid and late vitellogenic follicle cell-enriched representational difference analysis libraries

characteristic: title

text: Phagemid

text: pBluescript SK+


text: live

text: Generic

text: Bacteria were collected from thawed bacterial concentrate by centrifugation in an SS34 rotor at 16 000 r.p.m. for 30 min. The bacteria were resuspended in 1 ml of the supernatant and then mixed with 1% Sea Plaque agarose in deionized water at 55C. The molten mixture was drawn into a 1 ml syringe and allowed to solidify. The sample was equilibrated with buffer (10 mM Tris pH 8, 50 mM NaCl, 0.1 M EDTA, 1% Sarkosyl) and digested with 1 mg/ml lysozyme at 37C for 4 h. Buffer and lysozyme were replaced with 1% Sarkosyl in 0.5 M EDTA and the sample was digested with 1 mg/ml proteinase K at 55C for 18 h. Folowing the enzyme treatments, the sample was electrophoresed for 8 h at 23 V through 0.3% SeaKem Gold agarose in TAE buffer. DNA entering the gel, but larger than the 48 kb size standard was recovered from the gel by electroelution and concentrated by ethanol precipitation. The DNA was then sheared to 40 kb by 150 passages through a 200 ml pipette tip. The DNA was prepared for ligation using a blunt end repair kit (Epicentre Technologies) following the manufacturer's protocol. The insert DNA was then size selected by electrophoresis on 1% Sea Plaque GTG agarose. DNA was recovered from the gel following treatment with Gelase enzyme (Epicentre Technologies) digestion and ethanol precipitation. The DNA was then ligated to the pCC1FOS fosmid vector (Epicentre Technologies) and packaged using phage protein extract following the manufacturer's recommended procedure. EPI300 host E. coli infected with recombinant phage were plated on LB media containing chloramphenicol. Clones were picked and sorted into 96-well microtitre plates.

text: uncultured bacterium

text: Kirchman Environmental Fosmid Library

text: Phage


text: Nanjing Forestry University

characteristic: INSDC center name

text: live

text: Generic

text: phloem,vascular cambium and xylem cells

characteristic: cell type

text: The differential expressed genes isolated by the method of suppress substractive hybridization(SSH), and the cloning of genes took use of Pgem-T easy vector(Promega).

text: Vigorous growth from March to May

text: Cunninghamia lanceolata

text: hermaphrodite

text: stem

text: Forward subtractive cDNA library constructed with truncated stems treated by different concentrations of exogenous IAA


text: Nanjing Forestry University

characteristic: INSDC first public

text: live

text: Generic

text: phloem,vascular cambium and xylem cells

text: Vigorous growth from March to May

text: Cunninghamia lanceolata

text: hermaphrodite

text: stem

text: Reverse subtractive cDNA library constructed with truncated stems treated by different concentrations of exogenous IAA


text: Instituto Agricultura Sostenible. CSIC

characteristic: INSDC last update

text: live

text: Generic

text: Arbequina

characteristic: cultivar

text: Forward subtracted olive root cDNAs generated during Olea europaea-Pseudomonas fluorescens PICF7 interaction. Suppression Subtractive Hybridization (SSH) performed by using the Clontech PCR-Select cDNA Subtraction method.

text: Olea europaea

text: root

text: Up-regulated cDNAs from olive (Olea europaea) roots inoculated with Pseudomonas fluorescens PICF7 strain.

text: pGEM-T Easy (Promega)


text: Instituto Agricultura Sostenible. CSIC

text: live

characteristic: INSDC status

text: Generic

text: Arbequina

text: Reverse subtracted olive root cDNAs generated during Olea europaea-Pseudomonas fluorescens PICF7 interaction. Suppression Subtractive Hybridization (SSH) performed by using the Clontech PCR-Select cDNA Subtraction method.

text: Olea europaea

text: root

text: Down-regulated cDNAs from olive (Olea europaea) roots inoculated with Pseudomonas fluorescens PICF7 strain.

text: pGEM-T Easy (Promega)


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: GRU

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

characteristic: study design

text: Lissencephaly

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from Blood of a human male participant in the dbGaP study Molecular Genetic Studies of Developmental Brain Disorders


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: DNA

text: Blood

text: GRU

text: SNP Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Prospective Longitudinal Cohort

text: Molecular Genetic Studies of Developmental Brain Disorders

text: No

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: GRU

text: SNP Genotypes (NGS)

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

text: No

text: DNA sample from Blood of a human female participant in the dbGaP study Molecular Genetic Studies of Developmental Brain Disorders


text: University of Delaware

text: live

text: Generic

characteristic: description

text: uncultured bacterium

text: Kirchman Environmental Fosmid Library

text: Phage

characteristic: vector


Pachycladon fastigiatum chloroplast

characteristic: External Id

text: Massey University

characteristic: INSDC center name

text: live

text: Generic

text: Pachycladon fastigiatum

text: Whole chloroplast genome sequencing


Pachycladon cheesemanii chloroplast

text: Massey University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Pachycladon cheesemanii

text: Whole chloroplast genome sequencing


KV-1 D07038

text: College of Bioinformation, Chongqing University of Posts and Telecommunications, Chongqing , China

text: live

text: Generic

characteristic: NCBI submission package

text: Gossypium hirsutum

characteristic: organism

text: KV-1 D07038


Hai 15 D07038

text: live

text: Generic

text: Gossypium barbadense

text: Hai 15 D07038

characteristic: title


KV-1 V991

characteristic: INSDC secondary accession

text: live

text: Generic

text: Gossypium hirsutum

text: KV-1 V991


Hai 15 V991

text: live

characteristic: INSDC status

text: Generic

text: Gossypium barbadense

text: Hai 15 V991


KV-1 (control)

text: live

text: Generic

characteristic: NCBI submission model

text: Gossypium hirsutum


Hai 15 (control)

text: live

text: Generic

characteristic: SRA accession

text: Gossypium barbadense

text: Hai 15 (control)


Root of Aegilops variabilis

text: Chengdu Institute of Biology, Chinese Academy of Sciences

text: live

text: Generic

text: The sample sequenced is pooled RNA equally extracted from Roots of CCN-infected and non-infected plants at 30 hpi, 3 dpi, and 9 dpi. Each sample consisted of 15 individuals.

text: Aegilops ventricosa

text: Pooled RNA extracted from CCN-infected and untreated control plants


mixed sample

text: live

text: Generic

text: Gossypium hirsutum

text: mixed sample


text: KRIBB

text: live

text: Generic

text: ZHBTc4 F-Oct4

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: anti-Flag antibody

characteristic: chip seq antibody

text: Sigma

characteristic: chip-seq antibody vendor

text: Mus musculus

text: ZHBTc4 F-Oct4_input_IgG_control


text: KRIBB

text: live

text: Generic

text: ZHBTc4 F-Oct4

text: embryonic stem cell

text: anti-Flag antibody

text: Sigma

text: Mus musculus

text: ZHBTc4 F-Oct4_alpha-Oct4-SWGA


text: Ludwig Institue for Cancer Research

text: live

text: Generic

text: Mus musculus

text: HindIII

characteristic: restriction enzyme

text: Mouse ES

characteristic: strain

text: cortex

characteristic: tissue

text: RenLab-HiC-cortex, replicate one


characteristic: External Id

text: Ludwig Institue for Cancer Research

characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: HindIII

text: Mouse ES

text: cortex

text: RenLab-HiC-cortex, replicate two


text: Ludwig Institue for Cancer Research

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: hESC line H1

text: Homo sapiens

text: HindIII

text: Human ES

text: RenLab-HiC-hESC, replicate two


text: Ludwig Institue for Cancer Research

text: live

text: Generic

characteristic: NCBI submission package

text: IMR90 fetal lung fibroblast cell line

text: Homo sapiens

characteristic: organism

text: HindIII

text: Human IMR90

text: RenLab-HiC-IMR90, replicate two


text: BGI

characteristic: INSDC secondary accession

text: live

text: Generic

text: adult

characteristic: developmental stage

text: Zhang-gu

characteristic: landrace

text: Setaria italica

text: root

text: root

text: Foxtail millet root

characteristic: title


text: BGI

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: adult

text: Zhang-gu

text: Setaria italica

text: leaf

text: leaf

text: Foxtail millet leaf


text: BGI

text: live

text: Generic

text: adult

text: Zhang-gu

text: Setaria italica

text: stem

text: stem

text: Foxtail millet stem


text: BGI

text: live

text: Generic

text: adult

text: Zhang-gu

text: Setaria italica

text: spica (tassel)

text: tassel

text: Foxtail millet spica


text: CUHK

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Control

characteristic: disease

text: human gut metagenome

characteristic: sample id

text: Stool

characteristic: specimen

text: Baseline

characteristic: status

text: human gut metagenome


characteristic: External Id

text: CUHK

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: NAFLD

text: human gut metagenome

text: no treatment

characteristic: probiotic treatment

text: Stool

text: Baseline

text: human gut metagenome


text: CUHK

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: NAFLD

text: human gut metagenome

text: treatment

text: Stool

text: Baseline

text: human gut metagenome


text: CUHK

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: NAFLD

text: human gut metagenome

characteristic: organism

text: treatment

text: Stool

text: Month 6

text: human gut metagenome


text: CUHK

text: live

text: Generic

text: Generic

text: NAFLD

text: human gut metagenome

text: no treatment

text: Stool

text: Month 6

text: human gut metagenome

characteristic: title


text: Paro, D-BSSE, ETHZ

text: live

characteristic: INSDC status

text: Generic

text: S2-DRSC cells

characteristic: cell line

characteristic: chip antibody

text: Frank Sauer, Riverside

characteristic: chip antibody source

text: Drosophila melanogaster

text: S2-DRSC cells

text: Dm S2-DRSC ASH1N ChIP-seq


text: Paro, D-BSSE, ETHZ

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: S2-DRSC cells

text: Frank Sauer, Riverside

text: Drosophila melanogaster

text: S2-DRSC cells

text: Dm S2-DRSC ASH1C ChIP-seq


text: Paro, D-BSSE, ETHZ

text: live

text: Generic

text: S2-DRSC cells

text: FSH-S

text: Igor Dawid, Laboratory of Molecular Genetics, PGD, NICHD

text: Drosophila melanogaster

text: S2-DRSC cells

text: Dm S2-DRSC FSH-S ChIP-seq


text: Paro, D-BSSE, ETHZ

text: live

text: Generic

text: S2-DRSC cells

text: FSH-S and FSH-L

text: Drosophila melanogaster

text: S2-DRSC cells

text: Dm S2-DRSC FSH-S+L ChIP-seq


text: Victor Corces, Biology, Emory University

text: live

text: Generic

text: Kc167 Drosophila Embryonic Cell line

characteristic: cell type

text: Drosophila melanogaster

text: Kc cells


text: Ferdowsi University of Mashhad

text: live

text: Generic

text: Anamorph: Trichoderma harzianum

characteristic: description

text: Trichoderma lixii

characteristic: strain

text: germinated seed colonization, 18h-Liquid post-inoculation

text: Plasmid

characteristic: vector


characteristic: External Id

text: Ferdowsi University of Mashhad

characteristic: INSDC center name

text: live

text: Generic

text: Anamorph: Trichoderma harzianum

text: Trichoderma lixii

text: germinated seed colonization, 72h-Liquid post-inoculation

text: Plasmid


text: Ferdowsi University of Mashhad

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Anamorph: Trichoderma harzianum

text: Trichoderma lixii

text: germinated seed colonization, 12h-Solid post-inoculation

text: Plasmid


text: Ferdowsi University of Mashhad

text: live

text: Generic

characteristic: NCBI submission package

text: Anamorph: Trichoderma harzianum

text: Trichoderma lixii

text: Root Colonization, 18h-liquid post-inoculation

text: Plasmid


text: Ferdowsi University of Mashhad

text: live

text: Generic

text: Anamorph: Trichoderma harzianum

text: Trichoderma lixii

characteristic: organism

text: Root Colonization, 36h-liquid post-inoculation

text: Plasmid


text: National Center of Excellence in Molecular Biology

text: live

text: Generic

text: cDNA library was constructed from mRNA of drought stressed roots. Clones were randomly picked, PCR amplified and then sequenced.

text: 15 days of stress

characteristic: dev-stage

text: root

characteristic: organ

text: Gossypium arboreum

text: BsrG I

text: BsrG I

text: hermaphrodite

characteristic: sex

text: total root tissue

characteristic: tissue-type

text: Construction of cDNA library from roots of Gossypium arboreum

characteristic: title

text: Plasmid


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ESTs were obtained through differential display (Liang et. al) which appeared under salt stress responsive conditions. Identified ESTs were TA cloned in PCR 2.1 vector and sequenced.

text: After twenty-four hours of salt stress

text: root

text: Hibiscus sabdariffa

text: Hermaphrodite

text: total root tissue

text: Differential display of roselle genotype, root

text: Plasmid


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: female

characteristic: host sex

text: Pelomonas sp. ORNL_6EZ5-Gt_8_Pl1-85

characteristic: sample name

text: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_8_Pl1-85


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: female

text: Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-86

characteristic: strain

text: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-86


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: female

text: Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-93

text: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-93


PRJNA77813.Plasmodium falciparum SR1

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum SR1

text: Generic sample from Plasmodium falciparum


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum PG1.4-LR


PRJNA77813.Plasmodium falciparum HB3

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: isolate

text: Plasmodium falciparum

text: Plasmodium falciparum HB3


text: Broad Institute

text: live

text: Generic

text: Generic

text: female

text: Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-92

text: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-92


text: Broad Institute

text: live

text: Generic

text: Generic

text: female

text: Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-87

text: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-87


text: Broad Institute

text: live

text: Generic

text: Generic

text: female

text: Pelomonas sp. ORNL_6EZ5-Gt_7_Pl1-77

text: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_7_Pl1-77


PRJNA77813.Plasmodium falciparum FCB

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum FCB

text: FCB


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum FCB-2mut


text: Broad Institute

text: live

text: Generic

text: Generic

text: unclassified sequences

text: Generic sample from unclassified sequences


text: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences

text: live

text: Generic

text: Lake Bosten 22 Lake Bosten 4 Lake Ebinur Lake Jili Lake Kanas Lake Karakora Lake Satabradekora Lake Sayram Lake Swan Lake Taitema Lake Tianchi Lake Ulungur

characteristic: description

text: freshwater metagenome

text: Water samples from 12 lakes in Xinjiang Province, China


text: Reproduction and Development, Reproduction and Development, Erasmusmc

text: live

text: Generic

text: Embryonic stem cell (ESC)

characteristic: cell type

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: Cast/Eij /129/Sv

text: Wild type

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Embryonic stem cell (ESC)

text: Anti-V5 Agarose Affinity Gel antibody produced in mouse purified immunoglobulin, clone V5-10

characteristic: chip antibody

text: Sigma

characteristic: chip antibody vendor

text: expressing V5-tagged REX1

text: Mus musculus

text: V5-tagged REX1_ESCs

text: Cast/Eij /129/Sv

text: V5-tagged REX1 pulldown


Tuberous root of Rehmannia glutinosa

characteristic: External Id

text: IMPLAD

text: live

text: Generic

characteristic: SRA accession

text: The developing tuberous root of Rehmannia glutinosa cultivar 85-5, about two months after sprouting, was used in this study for 454 sequencing.

text: Rehmannia glutinosa

text: Rehmannia tuberous root


text: DBI, Plant and Soil Sciences, University of Delaware

characteristic: INSDC center name

text: live

text: Generic

characteristic: background

text: wildtype

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

characteristic: tissue

text: Arabidopsis wildtype Col-0 inflorescence, barcoded with 5' AG-biological replicate 1


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: wildtype

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis wildtype Col-0 inflorescence, barcoded with 5' AG - biological replicate 2


text: live

text: Generic

text: wildtype

text: Arabidopsis thaliana

characteristic: organism

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis wildtype Col-0 inflorescence, barcoded with 5' AG - biological replicate 3


text: live

text: Generic

text: nrpd1b-1 (Pol V) mutant

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis nrpd1b-1 (Pol V) mutant inflorescence, barcoded with 5' AG - biological replicate 1


text: live

text: Generic

text: nrpd1b-1 (Pol V) mutant

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis nrpd1b-1 (Pol V) mutant inflorescence, barcoded with 5' AG - biological replicate 2


text: live

text: Generic

text: nrpd1b-1 (Pol V) mutant

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis nrpd1b-1 (Pol V) mutant inflorescence, barcoded with 5' AG - biological replicate 3


text: live

text: Generic

text: wildtype (control for dms4-1, drd1-1, dms3-1, and rdm1-4 mutants previously described in Kanno et al. 2004 Current Biology, PMID: 15120073)

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis control plant inflorescence, control for dms4-1, drd1-1, dms3-1, and rdm1-4 mutants


text: live

text: Generic

text: dms4-1 mutant

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis dms4-1 mutant inflorescence


text: live

text: Generic

text: drd1-1 mutant

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis drd1-1 mutant inflorescence


text: live

text: Generic

text: dms3-1 mutant

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis dms3-1 mutant inflorescence


text: live

text: Generic

text: rdm1-4 mutant

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis rdm1-4 mutant inflorescence


text: live

text: Generic

text: nrpd1a-4 mutant (Pol IV mutant)

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis nrpd1a-4 mutant (Pol IV mutant) inflorescence


text: live

text: Generic

text: rdr2-1 mutant

text: Arabidopsis thaliana

text: immature inflorescence

text: immature inflorescence

text: Arabidopsis rdr2-1 mutant inflorescence


text: Yale University

text: live

text: Generic

text: HepG2 cells treated with forskolin

characteristic: description

text: Homo sapiens

text: HepG2 cells


Col-0 WL replicate 1

text: The Salk Institute - Ecker Laboratory

text: live

text: Generic

text: 5 day old seedlings were grown under white light and then were treated by shade for 1 hr or not treated. RNA was extracted from shoot tissues using the SpectrumTM plant total RNA kit from Sigma Aldrich (STRN250). Spectrum PolyA RNA was isolated from total RNA using the polyA Purist Kit (Ambion). One hundred nanograms of polyA-selected RNA was used in strand-specific RNA library construction following the manufacturer's protocol for the Whole Transcriptome Kit (Ambion). Amplified libraries were size selected using Ampure XP beads (Beckman) and sequenced for 50 bps on the SOLiD4 platform (Life Technologies).

text: Arabidopsis thaliana

text: Col-0 WL replicate 1


text: The Salk Institute - Ecker Laboratory

text: live

text: Generic

text: Arabidopsis thaliana


sediment of Chenghai Lake

text: State Key laboratory of Microbial Technology

text: live

text: Generic

text: The sediment were collected from Chenghai Lake, which is located in Yunnan province of China. Total DNA was extracted from 1.0 g mud using the FastDNA SPIN Kit for Soil (MP Biomedicals, USA) following the manufacturer's instructions. The target region of 16S rRNA gene were amplified after PCR, and the pyrosequencing was carried out on a 454 Life Sciences Genome Sequencer FLX instrument (Roche) in Shanghai Majorbio Bio-pharm Biotechnology Co., China.

text: freshwater sediment metagenome

text: Existence and diversity of myxobacteria in lake mud


Chilo suppressalis midgut transcriptome

text: Huazhong Agricultural University

text: live

text: Generic

text: The Chilo suppressalis strain was collected from the farm at the Huazhong Agricultural University, Wuhan, Hubei, China in 2010. This strain was reared in plastic containers (15 cm diameter * 8 cm high) on an artificial diet at 28 * 1 *C under a 16 h photoperiod and &gt; 80% relative humidity. For total RNA and protein preparation, midguts were dissected from fifth instar larvae and cleaned in ice-cold 0.7% NaCl solution, immediately frozen in liquid nitrogen, and then stored at -80 *C until use. The midgut content was removed before processing.

text: Chilo suppressalis

text: Exploring the midgut transcriptome and brush border membrane vesicle proteome of the rice stem borer, Chilo suppressalis (Walker)


name: Metatranscriptome from kimchi microbiome day 1

text: School of Biological Sciences, Chung-Ang University

text: live

text: Generic

text: Sequencing of the cDNA libraries (J7, J13, J18, J25, J29) were performed at Macrogen (Korea) using the Genome analyzer IIx platform (Illumina, USA). Individual samples (J7, J13, J18, J25, J29) were obtained for metatranscriptome analysis of microbiome during fermentation period (4°C) of food sample (Kimchi, Korean traditional fermented food). The samples were coded as Jx, where x designates the sampling day during fermentation.

text: food metagenome

text: metatranscriptome from microbiome sample day 1 obtained during kimchi fermentation


text: Technion

text: live

text: Generic

text: Strain CB4857 was obtained from the Caenorhabditis Genetics Center, and maintained at 20*C using standard culture methods (Brenner 1974).

text: Caenorhabditis elegans

text: Caenhorhabditis elegans strain CB4857


text: Technion

text: live

text: Generic

text: Strain RC301 was obtained from the Caenorhabditis Genetics Center, and maintained at 20*C using standard culture methods (Brenner 1974).

text: Caenorhabditis elegans

text: Caenhorhabditis elegans strain RC301


CB4856 strain

text: Technion

text: live

text: Generic

text: Strain CB4856 was obtained from the Caenorhabditis Genetics Center, and maintained at 20*C using standard culture methods (Brenner 1974).

text: Caenorhabditis elegans

text: Caenhorhabditis elegans strain CB4856


TCR transcripts

text: Burnet Institute

text: live

text: Generic

text: Homo sapiens

text: TRBV in H1N1 vaccination


text: Technion

text: live

text: Generic

text: Strain AB2 was obtained from the Caenorhabditis Genetics Center, and maintained at 20*C using standard culture methods (Brenner 1974).

text: Caenorhabditis elegans

text: Caenhorhabditis elegans strain AB2


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: Santa Cruz SC-12984

characteristic: antibody catalog number

text: Jurkat E6-1

characteristic: cell line

text: 10 million

characteristic: cell number

text: Homo sapiens

text: TAL1 ChIP-seq in Jurkat 1


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Santa Cruz SC-12984

text: Jurkat E6-1

text: 30 million

text: Homo sapiens

text: TAL1 ChIP-seq in Jurkat 2

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

text: Santa Cruz SC-357

text: Jurkat E6-1

text: 10 million

characteristic: chip antibody

text: Homo sapiens

text: TCF12/HEB ChIP-seq in Jurkat


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: Santa Cruz SC-349X

text: Jurkat E6-1

text: 30 million

text: Homo sapiens

text: TCF3/E2A ChIP-seq in Jurkat


characteristic: INSDC center name

text: live

text: Generic

text: Santa Cruz SC-22206

text: Jurkat E6-1

text: 30 million

text: Homo sapiens

text: GATA3 ChIP-seq in Jurkat


text: live

text: Generic

text: Santa Cruz SC-8563

text: Jurkat E6-1

text: 5 million

text: Homo sapiens

text: RUNX1 ChIP-seq in Jurkat 2


text: live

text: Generic

text: Santa Cruz SC-8563

text: Jurkat E6-1

text: 10 million

text: Homo sapiens

text: RUNX1 ChIP-seq in Jurkat


text: live

text: Generic

text: Santa Cruz SC-8563

text: Jurkat E6-1

text: 1 million

text: Homo sapiens

text: RUNX1 ChIP-seq in Jurkat 3


text: live

text: Generic

text: None WCE

text: Jurkat E6-1

text: Homo sapiens

text: Input ChIP-seq in Jurkat 2


text: live

text: Generic

text: None WCE

text: Jurkat E6-1

text: Homo sapiens

text: Input ChIP-seq in Jurkat


K65R subtupeC India

text: universite-CHU Bordeaux

text: live

text: Generic

text: 27 subtype C HIV-1 isolates from treated patients at failure of a regimen with d4T/AZT-3TC-EFV/NVP and which had been sequenced by Sanger, were investigated by UDPS at codon 65 of the reverse transcriptase (RT). 19 isolates from naive patients and dilutions of a control K65R plasmid were analysed by Sanger plus UDPS and UDPS respectively.

text: Human immunodeficiency virus 1

text: K65R mutation in subtype C HIV-1 isolates from patients at failure of a first line regimen including d4T or AZT: comparison of Sanger and UDPSequencing data


Aspergillus nidulans

text: Institute of Pharmaceutical Sciences

text: live

text: Generic

text: DNA extraction was done acording standard protocols for Aspergillus nidulans [1]. Starting material for sequencing 20 micrograms clean DNA. [1] T. Y.-K. Chow et al. A rapid method for isolation of total nucleic acids from Aspergillus nidulans.

text: Aspergillus nidulans NRRL 8112

text: Aspergillus nidulans, strain producer of Echinocandin B


text: DOE Joint Genome Institute

text: live

text: Generic

text: BGG Rhizosphere Warming Plot 5:Warming; June 2010

text: rhizosphere metagenome

characteristic: sample number

text: Generic sample from rhizosphere metagenome


MSB2 Soil Metagenomes

text: Michigan State University

characteristic: INSDC first public

text: live

text: Generic

text: The short reads for a Illumina GAII sequencing run of microbial DNA extracted from an agricultural soil sample.

text: soil metagenome

text: Michigan Switchgrass Bulk Soil Replicate #2


text: Dadras Lab, Genetics and Cell Biology, UCONN Health Center

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: Metastatic melanoma to lymph node, fresh frozen

text: metastatic melanoma to lymph node

characteristic: tissue

text: Metastatic Melanoma to Lymph Node1


text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

characteristic: organism

text: Acrolentiginous melanoma (3.0 mm, level IV), fresh frozen

text: acrolentiginous melanoma (3.0 mm, level IV)


text: live

text: Generic

text: Homo sapiens

text: Metastatic melanoma to the lymph node, fresh frozen

text: metastatic melanoma to the lymph node

text: Metastatic Melanoma to the Lymph Node2


text: live

text: Generic

text: Homo sapiens

text: Normal skin, fresh frozen

text: normal skin

text: Normal skin1


text: live

text: Generic

text: Homo sapiens

text: Primary cutaneous melanoma (11.5 mm, level V), fresh frozen

text: primary cutaneous melanoma (11.5 mm, level V)

text: Primary Cutaneous Melanoma1 (11.5 mm, level V)


text: live

text: Generic

text: Homo sapiens

text: Normal skin, formalin-fixed paraffin embedded

text: normal skin

text: Normal skin2


text: live

text: Generic

text: Homo sapiens

text: Primary cutaneous melanoma (4.0 mm, level IV), formalin-fixed paraffin embedded

text: primary cutaneous melanoma (4.0 mm, level IV)

text: Primary Cutaneous Melanoma2 (4.0 mm, level IV)


text: live

text: Generic

text: Homo sapiens

text: Melanocyte-medium, cultured cells

text: melanocyte-medium


text: live

text: Generic

text: Homo sapiens

text: Normal lymph node, formalin-fixed paraffin embedded

text: normal lymph node

text: Normal lymph node


text: live

text: Generic

text: Homo sapiens

text: Metastatic melanoma to lymph node, formalin-fixed paraffin embedded

text: metastatic melanoma to lymph node

text: Metastatic Melanoma to Lymph Node3


text: live

text: Generic

text: Homo sapiens

text: Common nevus, formalin-fixed paraffin embedded

text: common nevus

text: Common Nevus1


text: live

text: Generic

text: Homo sapiens

text: common nevus

text: Common Nevus2


text: live

text: Generic

text: Homo sapiens

text: Primary cutaneous melanoma (2.8 mm, level IV), formalin-fixed paraffin embedded

text: primary cutaneous melanoma (2.8 mm, level IV)

text: Primary Cutaneous Melanoma3 (2.8 mm, level IV)


text: Dadras Lab, Genetics and Cell Biology, UCONN Health Center

text: live

text: Generic

text: Homo sapiens

text: Primary cutaneous melanoma (2.5 mm, level IV), formalin-fixed paraffin embedded

text: primary cutaneous melanoma (2.5 mm, level IV)

text: Primary Cutaneous Melanoma4 (2.5 mm, level IV)


text: live

text: Generic

text: Homo sapiens

text: Primary cutaneous melanoma (2.0 mm, level IV), formalin-fixed paraffin embedded

text: primary cutaneous melanoma (2.0 mm, level IV)

text: Primary Cutaneous Melanoma5 (2.0 mm, level IV)


text: live

text: Generic

text: Homo sapiens

text: Melanocyte-dark, cultured cells

text: melanocyte-dark

text: Melanocyte-Dark


text: live

text: Generic

text: Homo sapiens

text: Metastatic melanoma to skin, formalin-fixed paraffin embedded

text: metastatic melanoma to skin

text: Metastatic Melanoma to skin1


text: live

text: Generic

text: Homo sapiens

text: metastatic melanoma to skin

text: Metastatic Melanoma to skin2


text: live

text: Generic

text: Homo sapiens

text: metastatic melanoma to skin

text: Metastatic Melanoma to skin3


text: live

text: Generic

text: Homo sapiens

text: Normal skin, formalin-fixed paraffin embedded

text: normal skin

text: Normal skin3


text: live

text: Generic

text: Homo sapiens

text: normal skin

text: Normal skin4


text: live

text: Generic

text: Homo sapiens

text: A2058, cultured cells


text: live

text: Generic

text: Homo sapiens

text: A375P, cultured cells


text: live

text: Generic

text: Homo sapiens

text: A375SM, cultured cells


text: live

text: Generic

text: Homo sapiens

text: C32, cultured cells


text: live

text: Generic

text: Homo sapiens

text: WM35, cultured cells


text: live

text: Generic

text: Homo sapiens

text: WM1552C, cultured cells


text: live

text: Generic

text: Homo sapiens

text: Melanocyte-light, cultured cells

text: melanocyte-light

text: Melanocyte-Light


text: live

text: Generic

text: Homo sapiens

text: Melanocyte-medium, cultured cells

text: melanocyte-medium


text: University of New Mexico

text: live

text: Generic

text: Saccharomyces cerevisiae S288C


text: Peking University at Shenzhen University Town

text: live

text: Generic

text: Supression subtractive hybridization was performed for cDNA populations of yeast grown at normal and stress conditions of pressure and temperature. The differentially expressed genes were amplified, cloned and transformed in to E. coli cells following cDNA library preparation.

characteristic: description

text: Naganishia vishniacii

text: NIOCC PY13

characteristic: strain

text: Cryptococcus vishniacii NIOCC PY13 subtracted cDNA library

text: Plasmid

text: pGEMt easy vestor

characteristic: vector


text: Crop Diversification Centre North, Alberta Agriculture and Rural Development

text: live

text: Generic

text: The library was constructed from a suppression subtractive hybridization using cDNA from 10-day infected pea leaves as tester and non-infected as driver

text: Ten days after inoculation on pea

characteristic: dev-stage

text: Pisum sativum (pea)

characteristic: lab-host

text: Peronospora pisi

text: Peronospora viciae f. sp. pisi strain Edn11 cDNA library


text: University of Veterinary Medicine Hannover

text: live

characteristic: INSDC status

text: Generic

text: Ixodes ricinus

text: Bartonella grahamii

characteristic: title


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: Sebacina vermifera MAFF 305830

text: Serendipita vermifera MAFF 305830

text: MAFF 305830

text: Generic sample from Sebacina vermifera MAFF 305830


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: SRA accession

text: Zea mays B73_NM_2

text: Zea mays

text: Generic sample from Zea mays


female

text: XM U

characteristic: INSDC center name

text: live

text: Generic

text: Sebastiscus marmoratus

text: Sebastiscus marmoratus (female)


production of bioflocculant

text: Xiamen University

characteristic: INSDC first public

text: live

text: Generic

text: One positive clone with flocculating activity was screened from the Fosmid Library. The positive clone showed a 29 kb inserted fragment responsible for the production of bioflocculant.

text: Bacillus licheniformis

text: DNAfragment responsible for the production of bioflocculant


text: Receptor Biology, LRDT, NIEHS

characteristic: INSDC last update

text: live

text: Generic

text: vehicle

characteristic: agent

text: ER alpha (sc-542, lot# D1310, Santa Cruz)

characteristic: chip antibody

text: Mus musculus

text: uterus

text: uterus

text: WT V ER alpha ChIP-seq


text: Receptor Biology, LRDT, NIEHS

text: live

text: Generic

characteristic: NCBI submission package

text: estradiol

text: Mus musculus

characteristic: organism

text: uterus

text: uterus

characteristic: tissue

text: WT 1h E2 ER alpha ChIP-seq


text: Receptor Biology, LRDT, NIEHS

text: live

text: Generic

text: vehicle

text: RNA polymerase II (ab5095, lot# GR32890-1, Abcam)

text: Mus musculus

text: uterus

characteristic: strain

text: uterus

text: WT V RNA polymerase II ChIP-seq


text: Receptor Biology, LRDT, NIEHS

text: live

text: Generic

text: estradiol

text: Mus musculus

text: uterus

text: uterus

text: WT 1h E2 RNA polymerase II ChIP-seq


text: Receptor Biology, LRDT, NIEHS

text: live

text: Generic

text: vehicle and estradiol

text: Mus musculus

text: uterus

text: uterus

text: input chromatin (WT V and WT 1hE2 mixed)


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

characteristic: cell type

text: c-Myc

text: Homo sapiens

text: B-cell lymphoma


text: live

text: Generic

text: c-Myc

text: Homo sapiens

text: Glioblastoma


text: live

text: Generic

text: Homo sapiens

text: B-cell lymphoma


text: live

text: Generic

text: Homo sapiens

text: Glioblastoma


text: live

text: Generic

text: Homo sapiens

text: Small Cell Lung Carcinoma


text: live

text: Generic

text: Max

text: Homo sapiens

text: B-cell lymphoma


text: live

text: Generic

text: Max

text: Homo sapiens

text: Glioblastoma


text: live

text: Generic

text: Plasma cell

text: DMSO

characteristic: drug

characteristic: duration

text: Homo sapiens

text: Multiple myeloma


text: live

characteristic: INSDC status

text: Generic

text: Plasma cell

text: Max

text: DMSO

text: Homo sapiens

text: Multiple myeloma

characteristic: title


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: Plasma cell

text: RNA Pol II (Rpb1 N-terminus)

text: DMSO

text: Homo sapiens

text: Multiple myeloma


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: Plasma cell

text: DMSO

text: Homo sapiens

text: Multiple myeloma


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: RNA Pol II (Rpb1 N-terminus)

text: Homo sapiens

text: B-cell lymphoma


characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: Small Cell Lung Carcinoma


text: live

text: Generic

text: Homo sapiens

text: B-cell lymphoma


text: live

text: Generic

text: Homo sapiens

text: Glioblastoma


text: live

text: Generic

text: cMyc

characteristic: chip antibody

text: Homo sapiens

text: Small Cell Lung Carcinoma


text: live

text: Generic

characteristic: NCBI submission package

text: Max

text: Homo sapiens

text: Small Cell Lung Carcinoma


text: live

text: Generic

text: RNA Pol II (Rpb1 N-terminus)

text: Homo sapiens

characteristic: organism

text: Small Cell Lung Carcinoma


text: live

text: Generic

text: RNA Pol II (Rpb1 N-terminus)

text: Homo sapiens

text: Glioblastoma


text: live

text: Generic

text: Plasma cell

text: c-Myc

text: DMSO

text: Homo sapiens

text: Multiple myeloma


text: Cornell University

text: live

text: Generic

characteristic: developmental stage

text: AKR/J mother x PWD/PhJ father

characteristic: genetic background

text: Mus musculus

text: female

characteristic: sex

text: mouse embryonic day 17.5 placental tissue

text: placenta

characteristic: tissue

text: Mouse placenta RNAseq AP E17


text: Cornell University

text: live

text: Generic

text: PWD/PhJ mother x AKR/J father

text: Mus musculus

text: female

text: placenta

text: Mouse placenta RNAseq PA E17


text: Cornell University

text: live

text: Generic

text: C57BL/6 mother x CAST/EiJ father

text: Mus musculus

text: female

text: placenta

text: Mouse placenta RNAseq BC E17


text: Cornell University

text: live

text: Generic

text: CAST/EiJ mother x C57BL/6 father

text: Mus musculus

text: female

text: placenta

text: Mouse placenta RNAseq CB E17


text: Cornell University

text: live

text: Generic

text: C57BL/6 mother x CAST/EiJ father

text: Mus musculus

text: female

text: mouse embryonic day 13.5 placental tissue

text: placenta

text: Mouse placenta RNAseq BC E13


text: Cornell University

text: live

text: Generic

text: CAST/EiJ mother x C57BL/6 father

text: Mus musculus

text: female

text: placenta

text: Mouse placenta RNAseq CB E13


text: Uppsala University

text: live

text: Generic

characteristic: TOC

characteristic: Tot-N

characteristic: Tot-P

text: Generic

characteristic: biosamplemodel

characteristic: lake area

text: uncultured bacterium

characteristic: sampling date

text: 16S rRNA gene, V3 and V4 amplification, uncultured bacterium, JBL_J07_HES


characteristic: External Id

text: Broad Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

characteristic: collection date

text: Poland

text: Brucella abortus 63/168

text: jerusalem swine

characteristic: specific host

characteristic: strain

text: Generic sample from Brucella abortus 63/168

characteristic: title


text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: Brucella abortus 78/36

characteristic: organism

text: Generic sample from Brucella abortus 78/36


text: Broad Institute

text: live

text: Generic

text: Nigeria

text: Brucella abortus 80/101

text: Generic sample from Brucella abortus 80/101


text: Broad Institute

text: live

text: Generic

text: Spain

text: Brucella abortus 80/102

text: Bovine

text: Generic sample from Brucella abortus 80/102


text: Broad Institute

text: live

text: Generic

text: New Zealand

text: Brucella abortus 80/108

text: Cow

text: Generic sample from Brucella abortus 80/108


text: Broad Institute

text: live

text: Generic

text: Greece

text: Brucella abortus 85/140

text: Bovine

text: Generic sample from Brucella abortus 85/140


text: Broad Institute

text: live

text: Generic

text: India

text: Brucella abortus 85/69

text: Bovine

text: Generic sample from Brucella abortus 85/69


text: Broad Institute

text: live

text: Generic

text: United Kingdom

text: Brucella abortus 863/67

text: Cow

text: Generic sample from Brucella abortus 863/67


text: Broad Institute

text: live

text: Generic

text: United Kingdom

text: Brucella abortus 877/67

text: Bovine

text: Generic sample from Brucella abortus 877/67


text: Broad Institute

text: live

text: Generic

text: Spain

text: Brucella abortus 88/19

text: Bovine

text: Generic sample from Brucella abortus 88/19


text: Broad Institute

text: live

text: Generic

text: Mozambique

text: Brucella abortus 88/226

text: Cow

text: Generic sample from Brucella abortus 88/226


text: Broad Institute

text: live

text: Generic

text: FSU

text: Brucella abortus 63/183

text: Ovine

text: Generic sample from Brucella abortus 63/183


text: Broad Institute

text: live

text: Generic

text: Saudi Arabia

text: Brucella abortus 90/50

text: Cow

text: Generic sample from Brucella abortus 90/50


text: Broad Institute

text: live

text: Generic

text: Bolivia

text: Brucella abortus 93/1

text: Cow

text: Generic sample from Brucella abortus 93/1


F1/06 B1

text: Broad Institute

text: live

text: Generic

text: Zimbabwe

text: Brucella abortus F1/06 B1

text: Cow

text: F1/06 B1

text: Generic sample from Brucella abortus F1/06 B1


text: Broad Institute

text: live

text: Generic

text: Portugal

text: Brucella abortus F2/06-8

text: Goat

text: Generic sample from Brucella abortus F2/06-8


text: Broad Institute

text: live

text: Generic

text: Kosovo

text: Brucella abortus F3/01

text: Bovine

text: Generic sample from Brucella abortus F3/01


text: Broad Institute

text: live

text: Generic

text: Italy

text: Brucella abortus F3/07-1

text: Generic sample from Brucella abortus F3/07-1


text: Broad Institute

text: live

text: Generic

text: Portugal

text: Brucella abortus F5/04-7

text: Bovine

text: Generic sample from Brucella abortus F5/04-7


text: Broad Institute

text: live

text: Generic

text: Sudan

text: Brucella abortus F6/05-2

text: Bovine

text: Generic sample from Brucella abortus F6/05-2


text: Broad Institute

text: live

text: Generic

text: Sudan

text: Brucella abortus F6/05-3

text: Generic sample from Brucella abortus F6/05-3


text: Broad Institute

text: live

text: Generic

text: Sudan

text: Brucella abortus F6/05-4

text: Generic sample from Brucella abortus F6/05-4


text: Broad Institute

text: live

text: Generic

text: Kenya

text: Brucella abortus 63/294

text: Generic sample from Brucella abortus 63/294


text: Broad Institute

text: live

text: Generic

text: Sudan

text: Brucella abortus F6/05-9

text: Bovine

text: Generic sample from Brucella abortus F6/05-9


I103 (UK3/01)

text: Broad Institute

text: live

text: Generic

text: Ireland

text: Brucella abortus I103_(UK3/01)

text: cow

text: Generic sample from Brucella abortus I103


levi gila

text: Broad Institute

text: live

text: Generic

text: Israel

text: Brucella abortus levi gila

text: Caprine

text: levi gila

text: Generic sample from Brucella abortus levi gila


text: Broad Institute

text: live

text: Generic

text: Israel

text: Brucella abortus LEVI237

text: Generic sample from Brucella abortus LEVI237


text: Broad Institute

text: live

text: Generic

text: Enniskillen, Northern Ireland

text: Brucella abortus NI240

text: Bovine

text: Generic sample from Brucella abortus NI240


text: Broad Institute

text: live

text: Generic

text: Enniskillen, Northern Ireland

text: Brucella abortus NI274

text: Bovine

text: Generic sample from Brucella abortus NI274


NI 352

text: Broad Institute

text: live

text: Generic

text: Enniskillen, Northern Ireland

text: Brucella abortus NI352

text: Bovine

text: Generic sample from Brucella abortus NI352


NI 380

text: Broad Institute

text: live

text: Generic

text: Enniskillen, Northern Ireland

text: Brucella abortus NI380

text: Bovine

text: Generic sample from Brucella abortus NI380


NI 388

text: Broad Institute

text: live

text: Generic

text: Enniskillen, Northern Ireland

text: Brucella abortus NI388

text: Bovine

text: Generic sample from Brucella abortus NI388


NI 422

text: Broad Institute

text: live

text: Generic

text: Armagh, Northern Ireland

text: Brucella abortus NI422

text: Bovine

text: Generic sample from Brucella abortus NI422


text: Broad Institute

text: live

text: Generic

text: Poland

text: Brucella abortus 63/59

text: Generic sample from Brucella abortus 63/59


NI 492

text: Broad Institute

text: live

text: Generic

text: Armagh, Northern Ireland

text: Brucella abortus NI492

text: Bovine

text: Generic sample from Brucella abortus NI492


NI 495a

text: Broad Institute

text: live

text: Generic

text: Newry, Northern Ireland

text: Brucella abortus NI495a

text: Bovine

text: Generic sample from Brucella abortus NI495a


text: Broad Institute

text: live

text: Generic

text: Newry, Northern Ireland

text: Brucella abortus NI518

text: Bovine

text: Generic sample from Brucella abortus NI518


text: Broad Institute

text: live

text: Generic

text: Newry, Northern Ireland

text: Brucella abortus NI593

text: Bovine

text: Generic sample from Brucella abortus NI593


text: Broad Institute

text: live

text: Generic

text: Armagh, Northern Ireland

text: Brucella abortus NI613

text: Bovine

text: Generic sample from Brucella abortus NI613


text: Broad Institute

text: live

text: Generic

text: Newry, Northern Ireland

text: Brucella abortus NI622

text: Bovine

text: Generic sample from Brucella abortus NI622


text: Broad Institute

text: live

text: Generic

text: Newry, Northern Ireland

text: Brucella abortus NI628

text: Bovine

text: Generic sample from Brucella abortus NI628


text: Broad Institute

text: live

text: Generic

text: Armagh, Northern Ireland

text: Brucella abortus NI633

text: Bovine

text: Generic sample from Brucella abortus NI633


text: Broad Institute

text: live

text: Generic

text: Newry, Northern Ireland

text: Brucella abortus NI639

text: Bovine

text: Generic sample from Brucella abortus NI639


text: Broad Institute

text: live

text: Generic

text: Newry, Northern Ireland

text: Brucella abortus NI645

text: Bovine

text: Generic sample from Brucella abortus NI645


text: Broad Institute

text: live

text: Generic

text: India

text: Brucella abortus 64/108

text: Goat

text: Generic sample from Brucella abortus 64/108


text: Broad Institute

text: live

text: Generic

text: Newry, Northern Ireland

text: Brucella abortus NI649

text: Bovine

text: Generic sample from Brucella abortus NI649


text: Broad Institute

text: live

text: Generic

text: Brucella melitensis 63/227

text: Generic sample from Brucella melitensis 63/227


text: Broad Institute

text: live

text: Generic

text: Brucella melitensis 64/150

text: Generic sample from Brucella melitensis 64/150


text: Broad Institute

text: live

text: Generic

text: India

text: Brucella melitensis 66/59

text: Ovine

text: Generic sample from Brucella melitensis 66/59


F1/06 B10

text: Broad Institute

text: live

text: Generic

text: Zimbabwe

text: Brucella melitensis F1/06 B10

text: Goat

text: F1/06 B10

text: Generic sample from Brucella melitensis F1/06 B10


text: Broad Institute

text: live

text: Generic

text: Portugal

text: Brucella melitensis F10/05-2

text: Generic sample from Brucella melitensis F10/05-2


text: Broad Institute

text: live

text: Generic

text: Portugal

text: Brucella melitensis F2/06-6

text: Sheep

text: Generic sample from Brucella melitensis F2/06-6


text: Broad Institute

text: live

text: Generic

text: Norway

text: Brucella melitensis F3/02

text: Homo sapiens

text: Generic sample from Brucella melitensis F3/02


text: Broad Institute

text: live

text: Generic

text: Italy: Sicily

text: Brucella melitensis F5/07-239A

text: Sheep/Goat

text: Generic sample from Brucella melitensis F5/07-239A


text: Broad Institute

text: live

text: Generic

text: Kosovo

text: Brucella melitensis F8/01-155

text: Bovine

text: Generic sample from Brucella melitensis F8/01-155


text: Broad Institute

text: live

text: Generic

text: United Kingdom

text: Brucella abortus 64/122

text: Bovine

text: Generic sample from Brucella abortus 64/122


text: Broad Institute

text: live

text: Generic

text: Brucella melitensis R3/07-2

text: Generic sample from Brucella melitensis R3/07-2


text: Broad Institute

text: live

text: Generic

text: Somalia

text: Brucella melitensis UK14/06

text: Homo sapiens

text: Generic sample from Brucella melitensis UK14/06


text: Broad Institute

text: live

text: Generic

text: Somalia

text: Brucella melitensis UK19/04

text: Homo sapiens

text: Generic sample from Brucella melitensis UK19/04


text: Broad Institute

text: live

text: Generic

text: United Kingdom

text: Brucella melitensis UK22/04

text: Homo sapiens

text: Generic sample from Brucella melitensis UK22/04


text: Broad Institute

text: live

text: Generic

text: Somalia

text: Brucella melitensis UK22/06

text: Homo sapiens

text: Generic sample from Brucella melitensis UK22/06


text: Broad Institute

text: live

text: Generic

text: Somalia

text: Brucella melitensis UK23/06

text: Homo sapiens

text: Generic sample from Brucella melitensis UK23/06


text: Broad Institute

text: live

text: Generic

text: Nigeria

text: Brucella melitensis Uk24/06

text: Homo sapiens

text: Generic sample from Brucella melitensis Uk24/06


text: Broad Institute

text: live

text: Generic

text: United Kingdom

text: Brucella melitensis UK37/05

text: Homo sapiens

text: Generic sample from Brucella melitensis UK37/05


text: Broad Institute

text: live

text: Generic

text: Thailand

text: Brucella sp. 63/311

text: Generic sample from Brucella sp. 63/311


text: Broad Institute

text: live

text: Generic

text: USA

text: Brucella sp. F8/99

text: harbour seal

text: Generic sample from Brucella sp. F8/99


text: Broad Institute

text: live

text: Generic

text: Nigeria

text: Brucella abortus 65/110

text: Generic sample from Brucella abortus 65/110


text: Broad Institute

text: live

text: Generic

text: Brucella sp. UK1/97

text: harbour porpoise

text: Generic sample from Brucella sp. UK1/97


text: Broad Institute

text: live

text: Generic

text: United Kingdom

text: Brucella sp. UK38/05

text: white sided dolphin

text: Generic sample from Brucella sp. UK38/05


text: Broad Institute

text: live

text: Generic

text: United Kingdom

text: Brucella sp. UK40/99

text: Grey Seal

text: Generic sample from Brucella sp. UK40/99


text: Broad Institute

text: live

text: Generic

text: United Kingdom

text: Brucella sp. UK5/01

text: common seal

text: Generic sample from Brucella sp. UK5/01


text: Broad Institute

text: live

text: Generic

text: Brucella suis 63/198

text: Generic sample from Brucella suis 63/198


text: Broad Institute

text: live

text: Generic

text: Brucella suis 63/252

text: Generic sample from Brucella suis 63/252


text: Broad Institute

text: live

text: Generic

text: Denmark

text: Brucella suis 63/261

text: Generic sample from Brucella suis 63/261


text: Broad Institute

text: live

text: Generic

text: Brucella suis 92/29

text: Generic sample from Brucella suis 92/29


text: Broad Institute

text: live

text: Generic

text: Czechoslovakia

text: Brucella suis 92/63

text: Hare

text: Generic sample from Brucella suis 92/63


text: Broad Institute

text: live

text: Generic

text: Brucella suis F12/02

text: Generic sample from Brucella suis F12/02


text: Broad Institute

text: live

text: Generic

text: Uganda

text: Brucella abortus 65/157

text: Generic sample from Brucella abortus 65/157


text: Broad Institute

text: live

text: Generic

text: Belgium

text: Brucella suis F8/06-2

text: Generic sample from Brucella suis F8/06-2


text: Broad Institute

text: live

text: Generic

text: United Kingdom

text: Brucella abortus 67/781

text: Generic sample from Brucella abortus 67/781


name: Streptomyces viridochromogenes - De novo sequencing

text: University of Freiburg

text: live

text: Generic

text: Streptomyces viridochromogenes Tue57

text: Streptomyces viridochromogenes - producer of avilamycin A


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Macaca fascicularis

characteristic: sample id

characteristic: sample name

text: genomic dna

characteristic: sample type

text: Generic sample from Macaca fascicularis


Salmonella Gallinarum FDA5

characteristic: External Id

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: culture collection

text: ATCC 9184

characteristic: isolate

text: Salmonella enterica subsp. enterica serovar Gallinarum str. 9184

text: Type Strain ATCC:9184

text: Gallinarum

characteristic: serovar

text: enterica

characteristic: sub species

text: T


text: Uppsala University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

characteristic: TOC

characteristic: Tot-N

characteristic: Tot-P

text: TACTGCA

characteristic: barcode

text: Generic

text: uncultured bacterium

text: June 23 2010

characteristic: sampling date

text: 16S rRNA gene, V3-V4

characteristic: title


text: Townsend Lab, Ecology and Evolutionary Biology, Yale University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: mixed stages

characteristic: developmental stage

text: Arabidopsis thaliana

characteristic: organism

text: floral buds, DEX-treated 35S:GR-RBE

text: L er with 35S:GR-RBE transgene

characteristic: strain

text: floral buds

characteristic: tissue

text: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1


characteristic: External Id

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: mixed stages

text: Arabidopsis thaliana

text: floral buds, DEX-treated 35S:GR-RBE

text: L er with 35S:GR-RBE transgene

text: floral buds

text: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2


text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: mixed stages

text: Arabidopsis thaliana

text: floral buds, DEX-treated 35S:GR-RBE

text: L er with 35S:GR-RBE transgene

text: floral buds

text: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1


text: live

text: Generic

text: mixed stages

text: Arabidopsis thaliana

text: floral buds, DEX-treated 35S:GR-RBE

text: L er with 35S:GR-RBE transgene

text: floral buds

text: mRNA from DEX-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2


text: live

text: Generic

text: mixed stages

text: Arabidopsis thaliana

text: floral buds, mock-treated 35S:GR-RBE

text: L er with 35S:GR-RBE transgene

text: floral buds

text: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 1


text: live

text: Generic

text: mixed stages

text: Arabidopsis thaliana

text: floral buds, mock-treated 35S:GR-RBE

text: L er with 35S:GR-RBE transgene

text: floral buds

text: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 1, techinical replicate 2


text: live

text: Generic

text: mixed stages

text: Arabidopsis thaliana

text: floral buds, mock-treated 35S:GR-RBE

text: L er with 35S:GR-RBE transgene

text: floral buds

text: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 1


text: live

text: Generic

text: mixed stages

text: Arabidopsis thaliana

text: floral buds, mock-treated 35S:GR-RBE

text: L er with 35S:GR-RBE transgene

text: floral buds

text: mRNA from mock-treated 35S:GR-RBE floral buds, biological replicate 2, techinical replicate 2


text: Uppsala University

text: live

text: Generic

characteristic: TOC

characteristic: Tot-N

characteristic: Tot-P

text: TACGTCA

text: Generic

characteristic: biosamplemodel

text: uncultured bacterium

text: June 23 2010

text: 16S rRNA gene, V3-V4


text: Uppsala University

characteristic: INSDC center name

text: live

text: Generic

text: TACGAGT

characteristic: barcode

text: Generic

text: uncultured bacterium

text: June 23 2010

characteristic: sampling date

text: 16S rRNA gene, V3-V4

characteristic: title


text: Uppsala University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: TACGCTA

text: Generic

text: uncultured bacterium

text: June 23 2010

text: 16S rRNA gene, V3-V4


text: Uppsala University

text: live

text: Generic

text: TAGTCAC

text: Generic

text: uncultured bacterium

characteristic: organism

text: June 23 2010

text: 16S rRNA gene, V3-V4


characteristic: External Id

text: Uppsala University

text: live

text: Generic

text: TACTGAC

text: Generic

text: uncultured bacterium

text: June 23 2010

text: 16S rRNA gene, V3-V4


text: Uppsala University

characteristic: INSDC secondary accession

text: live

text: Generic

text: TAGACTC

text: Generic

text: uncultured bacterium

text: June 23 2010

text: 16S rRNA gene, V3-V4


text: Uppsala University

text: live

characteristic: INSDC status

text: Generic

text: TAGACGA

text: Generic

text: uncultured bacterium

text: June 23 2010

text: 16S rRNA gene, V3-V4


text: Uppsala University

text: live

text: Generic

characteristic: NCBI submission model

text: TAGAGAC

text: Generic

text: uncultured bacterium

text: June 23 2010

text: 16S rRNA gene, V3-V4


text: Uppsala University

text: live

text: Generic

characteristic: SRA accession

text: TAGAGCA

text: Generic

text: uncultured bacterium

text: June 23 2010

text: 16S rRNA gene, V3-V4


text: Uppsala University

text: live

text: Generic

characteristic: TOC

text: TAGCTCA

text: Generic

text: uncultured bacterium

text: June 23 2010

text: 16S rRNA gene, V3-V4


text: Uppsala University

text: live

text: Generic

characteristic: Tot-N

text: TAGCACT

text: Generic

text: uncultured bacterium

text: June 18 2010

text: 16S rRNA gene, V3-V4


text: Uppsala University

text: live

text: Generic

characteristic: Tot-P

text: TAGCAGA

text: Generic

text: uncultured bacterium

text: June 18 2010

text: 16S rRNA gene, V3-V4


text: Uppsala University

text: live

text: Generic

text: TAGCGTA

text: Generic

characteristic: biosamplemodel

text: uncultured bacterium

text: June 18 2010

text: 16S rRNA gene, V3-V4


text: Uppsala University

characteristic: INSDC center name

text: live

text: Generic

text: TCTACTC

text: Generic

text: uncultured bacterium

text: June 18 2010

text: 16S rRNA gene, V3-V4


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Streptococcus pneumoniae SPAR27

characteristic: strain

text: Streptococcus pneumoniae SPAR27


Salmonella Rissen FDA6

text: live

text: Generic

text: Salmonella enterica subsp. enterica serovar Rissen str. 150

text: Rissen

characteristic: serovar

text: enterica

characteristic: sub species


text: Uppsala University

characteristic: INSDC first public

text: live

text: Generic

text: TCTCTCA

characteristic: barcode

text: Generic

text: uncultured bacterium

text: June 18 2010

characteristic: sampling date

text: 16S rRNA gene, V3-V4

characteristic: title


Salmonella Dublin FDA7

characteristic: External Id

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: Salmonella enterica subsp. enterica serovar Dublin str. SL1438

characteristic: organism

text: Dublin

text: enterica


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Streptococcus pneumoniae SPAR55

text: Streptococcus pneumoniae SPAR55


name: Salmonella enterica subsp. enterica serovar Dublin str. HWS51

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Dublin

text: enterica


characteristic: INSDC center name

text: live

text: Generic

text: Streptococcus pneumoniae SPAR48

text: Streptococcus pneumoniae SPAR48


text: live

text: Generic

text: Streptococcus pneumoniae SPAR95

characteristic: strain

text: Streptococcus pneumoniae SPAR95


name: Salmonella enterica subsp. enterica serovar Enteritidis str. 436

text: live

text: Generic

text: Generic


text: live

text: Generic

text: Streptococcus infantis SPAR10

text: Streptococcus mitis SPAR10


name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1700

text: live

text: Generic

characteristic: serovar

text: enterica


name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1739

text: live

text: Generic

text: enterica

characteristic: sub species


name: Salmonella enterica subsp. enterica serovar Kentucky str. 29439

characteristic: INSDC first public

text: live

text: Generic

text: Kentucky

text: enterica


name: Salmonella enterica subsp. enterica serovar Typhimurium str. CDC_2009K1153

text: clinical/research| human

characteristic: IFSAC+ Category

text: live

text: Pathogen.cl

text: clinical/host-associated

text: homo sapiens

characteristic: host type

characteristic: ontological term

text: Typhimurium

text: Human

characteristic: source type

text: enterica


name: Salmonella enterica subsp. enterica serovar Javiana str. ATCC BAA-1593

characteristic: External Id

characteristic: INSDC last update

text: live

text: Generic

characteristic: isolate

text: Javiana

text: ATCC BAA-1593

text: enterica

characteristic: title


name: Salmonella enterica subsp. enterica serovar Montevideo str. 316111868

text: nuts

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: pistachio

characteristic: isolation source

text: pistachio nut (whole, raw):FOODON_03301825

characteristic: organism

text: Montevideo

text: Food

text: enterica


name: Salmonella enterica subsp. enterica serovar Tennessee str. 4535

text: clinical/research

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: SRA accession

text: environmental/food/other

text: Tennessee

characteristic: strain

text: enterica


name: Salmonella enterica subsp. enterica serovar Newport str. CVM 35185

characteristic: INSDC first public

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: CVM

text: Newport

characteristic: serovar

text: CVM 35185

text: enterica

characteristic: sub species


name: Salmonella enterica subsp. enterica serovar Newport str. CVM 35199

characteristic: External Id

text: live

text: Generic

text: Generic

text: CVM

text: Newport

text: CVM 35199

text: enterica


name: Salmonella enterica subsp. enterica serovar Newport str. CVM 21539

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: CVM

text: Newport

text: CVM 21539

text: enterica


name: Salmonella enterica subsp. enterica serovar Newport str. CVM 19567

text: live

text: Generic

text: Generic

text: CVM

characteristic: isolate

text: Newport

text: CVM 19567

text: enterica


CoNECT-Ovaries

text: University of Iowa

text: live

text: Generic

text: The fly strain we used in this study is Drosophila melanogaster (yellow (y); cinnabar (cn); brown (bw); speck (sp)) used in the BDGP sequencing project. Fly embryos were collected using small grape plates (0-4 hours, 25 °C) at Day 0 and raised at 25 °C. Virgin females and males were collected into different bottles containing standard media from Day 9 to Day 10. Ovaries were dissected in 1X PBS solution under dissecting microscope at Day 11 to Day 12 (1 to 2 days after eclosion) and were quickly frozen in Trizol reagent at -80 °C. Total RNA was isolated following the Trizol RNA isolation protocol (Invitrogen) and purified on RNeasy columns (Qiagen). mRNAs were isolated using Poly(A) purist kit (Ambion) and then transcribed into double stranded cDNA using Superscript Double-Stranded cDNA synthesis kit following manufacturer’s instructions (Invitrogen). A total of 6 *g of ovary cDNA was used for capture.

characteristic: description

text: Drosophila melanogaster

text: Microarray-based Capture of Novel Expressed Cell type-specific Transcripts (CoNECT) to annotate tissue specific transcript isoforms in D. melanogaster

characteristic: title


LT2-4 _ramA::kan

text: clinical/research

characteristic: IFSAC+ Category

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: ontological term

text: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2-4_delta.ramA::kan

text: Typhimurium

text: enterica


CoNECT-Testes

text: University of Iowa

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: The fly strain we used in this study is Drosophila melanogaster (yellow (y); cinnabar (cn); brown (bw); speck (sp)) used in the BDGP sequencing project. Fly embryos were collected using small grape plates (0-4 hours, 25 °C) at Day 0 and raised at 25 °C. Virgin females and males were collected into different bottles containing standard media from Day 9 to Day 10. Testes were dissected in 1X PBS solution under dissecting microscope at Day 11 to Day 12 (1 to 2 days after eclosion) and were quickly frozen in Trizol reagent at -80 °C. Total RNA was isolated following the Trizol RNA isolation protocol (Invitrogen) and purified on RNeasy columns (Qiagen). mRNAs were isolated using Poly(A) purist kit (Ambion) and then transcribed into double stranded cDNA using Superscript Double-Stranded cDNA synthesis kit following manufacturer’s instructions (Invitrogen). A total of 5.7 *g of testis cDNA was used for capture.

text: Drosophila melanogaster

characteristic: organism


text: Scripps Translational Science Institute

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: mixed DNA library

text: Unnatural Base Pair Lost - No Amplification


text: Scripps Translational Science Institute

text: live

text: Generic

text: mixed DNA library

text: Unnatural Base Pair Retained - No Amplification


text: Scripps Translational Science Institute

text: live

text: Generic

text: mixed DNA library

text: Unnatural Base Pair Lost - 10^3fold Amplification


text: Scripps Translational Science Institute

text: live

text: Generic

text: mixed DNA library

text: Unnatural Base Pair Retained - 10^3fold Amplification


text: Scripps Translational Science Institute

text: live

text: Generic

text: mixed DNA library

text: Unnatural Base Pair Lost - 10^6fold Amplification


text: Scripps Translational Science Institute

text: live

text: Generic

text: mixed DNA library

text: Unnatural Base Pair Retained - 10^6fold Amplification


text: Scripps Translational Science Institute

text: live

text: Generic

text: mixed DNA library

text: Unnatural Base Pair Lost - 10^12fold Amplification


text: Scripps Translational Science Institute

text: live

text: Generic

text: mixed DNA library

text: Unnatural Base Pair Retained - 10^12fold Amplification


text: Scripps Translational Science Institute

text: live

text: Generic

text: mixed DNA library

text: Unnatural Base Pair Lost - 10^18fold Amplification


text: Scripps Translational Science Institute

text: live

text: Generic

text: mixed DNA library

text: Unnatural Base Pair Retained - 10^18fold Amplification