characteristic: External Id

text: DOE-CSP 2010

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Prodigal 1.4, GenePRIMP

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

text: NCBI

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: free living

text: Keywords: GSC:MIGS:2.1

characteristic: investigation type

text: Methanobacterium paludis

characteristic: organism

text: Methanobacterium sp. SWAN-1

characteristic: project name

characteristic: strain

text: Mesophile

characteristic: temperature range

text: Methanobacterium sp. SWAN-1, complete genome.

characteristic: title

text: Lithotroph, Lithotroph

text: type strain of Methanobacterium paludis


status: PUBLIC

tag: attribute

text: Prodigal 1.4, GenePRIMP

text: Gram-

text: NCBI

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Keywords: GSC:MIGS:2.1

characteristic: description

text: Host

characteristic: environment

text: Rapeseed plant

characteristic: isolation site

text: Motile

characteristic: motility

text: Serratia sp. AS13

text: Serratia sp. AS13

text: facultative

text: Mesophile

text: Serratia sp. AS13, complete genome.


characteristic: External Id

characteristic: GOLD Stamp ID

text: Prodigal 1.4, GenePRIMP

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

text: NCBI

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Nonsporulating

characteristic: Sporulation

text: No

characteristic: Type Strain

text: free living

text: Rod-shaped

text: Keywords: GSC:MIGS:2.1

text: Fresh water, Hot spring

text: Nonmotile

text: Thermus thermophilus SG0.5JP17-16

text: 7.5 - 7.8

characteristic: ph

text: Thermus thermophilus SG0.5JP17-16

text: obligate aerobe

characteristic: temperature optimum

text: Thermophile

text: Thermus thermophilus SG0.5JP17-16, complete genome.

text: chemosynthetic


text: Prodigal 1.4, GenePRIMP

text: Gram-

text: NCBI

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Nonsporulating

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Keywords: GSC:MIGS:2.1

text: Sea water

characteristic: investigation type

text: deep sea

text: deep sea

characteristic: isolation-source

text: Nonmotile

text: Lacinutrix sp. 5H-3-7-4

characteristic: organism

text: Lacinutrix sp. 5H-3-7-4

characteristic: project name

text: aerobe

characteristic: strain

text: Psychrophile

characteristic: temperature range

text: Lacinutrix sp. 5H-3-7-4, complete genome.

characteristic: title

text: heterotroph


characteristic: External Id

text: DOE-CSP 2010

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Gram-

characteristic: Gram Staining

text: NCBI

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Nonsporulating

characteristic: Sporulation

text: free living

text: Rod-shaped

text: Keywords: GSC:MIGS:2.1

characteristic: description

text: Marine

characteristic: environment

text: Motile

characteristic: motility

text: Shewanella baltica OS117

text: Shewanella baltica OS117

text: facultative

text: Mesophile

text: Shewanella baltica OS117, complete genome.

text: heterotroph


text: NCBI

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 0 m

text: free living

characteristic: biotic relationship

text: Hans Peter Grossart

characteristic: collected by

characteristic: collection date

text: Germany

characteristic: country

text: 1 m

characteristic: depth

text: Keywords: GSC:MIGS:2.1

text: marine water

text: temperate shelf and sea biome (ENVO:00000895), tidal mudflat (ENVO:00000241), coastal water (ENVO:00002150)

characteristic: habitat

characteristic: investigation type

text: -> PMID: 19712327; DOI: 10.1016/S0168-6496(03)00305-2; Marinobacter adhaerens HP15 grows optimally at a range of 34-38 degrees Celsius, a pH of 7.0-8.5 and is able to withstand salt concentrations between 0.4-20% (w/v) NaCl; culture media: Marine Broth

text: German Wadden Sea

characteristic: isolation-source

text: 53.722222 N 7.722222 E

characteristic: lat lon

text: Marinobacter adhaerens HP15

characteristic: organism

text: Marinobacter adhaerens HP15 genome project

text: aerobe

text: water

characteristic: sample material

text: 15 deg C

characteristic: temp

text: Marinobacter adhaerens HP15 plasmid pHP-187, complete sequence.

text: heterotroph


Lake Alinen Mustaj*rvi

characteristic: External Id

text: Uppsala University, Department of Ecology and Genetics

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Time series data from lake Alinen Mustaj*rvi. Samples were obtained from epi-, meta- and hypolimnion. Sequences of 16S rRNA gene amplicons from 3 454pyrosequencing runs using barcodes to distinguish 122 samples.

characteristic: description

text: uncultured bacterium

text: Time series data from lake Alinen Mustajarvi

characteristic: title


4 Finnish Lakes

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: During two occasions samples were obtained from epi-, meta and hypolimnion of 4 Finnish lakes: Nimet*n, Mekkoj*rvi, Valkea Kotinen, and Valkea Mustaj*rvi. Sequencing of 16S rRNA gene amplicons by 454 pyrosequencing; samples can be distinguished with barcodes.

text: uncultured bacterium

text: 4 Finnish Lakes


text: University of Queensland St Lucia Campus

text: live

text: Generic

text: Adult

characteristic: dev-stage

text: Haliotis asinina

text: Cerebral and pleuropedal ganglia

characteristic: tissue-type

text: RANRA


text: live

text: Generic

text: Adult

text: Haliotis asinina

text: Muscle

text: FMHM


text: live

text: Generic

text: Adult

text: Haliotis asinina

text: Muscle

text: HMFM


text: IRBV, Universite de Montreal

text: live

text: Generic

text: Oehlia diaphana

text: Glomus diaphanum DNA (Halary S)


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Thiocapsa marina 5811

text: Thiocapsa marina 5811

characteristic: strain

text: Generic sample from Thiocapsa marina 5811


text: NCBI

text: live

text: Generic

text: 5.6 meq/L

characteristic: alkalinity

text: 521 m

text: 989-1249 microg/L

characteristic: ammonium

text: 1.2 g/L

characteristic: calcium

text: 0.1-0.29 g/L

characteristic: chloride

text: 3.22-4.19 mg/m3

characteristic: chlorophyll

characteristic: collection date

characteristic: collection time

text: 50 ml Falcon tube

characteristic: container

text: Spain: near Madrid

characteristic: country

text: 25 m

characteristic: depth

text: Keywords: GSC:MIMS:2.1

text: 6.78-7.66 mg/L

characteristic: dissolved oxygen

text: 0.26-0.42 g/L

text: small lake biome [ENVO:00000892], anaerobic sediment material [ENVO:00002045], brackish lake feature [ENVO:00000540]

characteristic: environment

text: metagenome

characteristic: investigation type

text: Carrizo shallow lake

characteristic: isolation-source

text: 40.309167 N 3.659444 W

characteristic: lat lon

text: 30 m recorded accuracy

text: Sequencing

text: 0.7 g/L

characteristic: magnesium

text: 54-744 mg/L

characteristic: nitrate

text: The DNA has not been amplified

text: GNOME DNA (QBIOgene)

text: 44-100 mg/L

text: 1.04-1.99 mg/L

text: sediment metagenome

characteristic: organism

text: the sediment is anoxic but the water colum contains O2 (6.78-7.66 mg/L)

text: sediment sample

characteristic: ph

text: 3.2-3.5 mg/L

characteristic: phosphate

text: 0.004-0.04 g/L

characteristic: potassium

text: 1 atm

characteristic: pressure

text: Laguna de Carrizo

characteristic: project name

text: anaerobe

text: 3160-4910 uS/cm

characteristic: salinity

text: Storing sediment sample at -20 degrees C

characteristic: samp mat process

text: Petite Ponar(R) clamshell-style dredge

text: 2.5 years

text: ultrafrezeer

text: Sediment sample constitued by small particles (similar to plaster)

text: 44-100 mg/L

characteristic: silicate

text: Carrizo shallow lake

characteristic: site

text: 3.1-5.4 g/L

characteristic: sulfate

text: 15.0 degrees Celsius

characteristic: temperature

text: Sample from sediment metagenome

text: 1.04-1.99 mg/L

text: 44-100 mg/L

text: 1.8 m

characteristic: turbidity

characteristic: url

text: sediment sample

characteristic: water content


characteristic: External Id

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 0 m

characteristic: collection date

text: Panama: Gamboa

characteristic: country

text: 0.5 m

characteristic: depth

text: Keywords: GSC:MIMS:2.1

characteristic: description

text: Atta cephalotes fungus garden

characteristic: environment

text: metagenome

characteristic: investigation type

text: 9.1167 -79.7000

characteristic: lat lon

text: ant fungus garden metagenome

text: Leaf-cutter Ant Fungus Garden Microbiome

text: Sample from ant fungus garden metagenome

characteristic: title


small RNA sequencing - w1 x Har 2-4 day

characteristic: External Id

text: University of Massachusetts Medical School

text: live

text: Generic

text: Drosophila melanogaster

characteristic: organism

text: small RNA sequencing - w1 x Har 2-4 day


text: Samuel Roberts Noble Foundation

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: cultivar

text: Total RNA was isolated separately from healthy leaves, leaf discs showing the translucent symptoms of blister blight disease, and leaf discs from healthy areas of infected leaves from blister blight resistant tea cultivars TRI2043. Equal amount of total RNA from these three samples were mixed together and the poly (A)+ RNA were isolated by using Oligotex mRNA Mini Kit. The Creator Smart cDNA Library Construction Kit were used for the cDNA library construction according to the manufacturer's instructions.

text: Camellia sinensis

text: leaf

characteristic: tissue-type

text: Camellia sinensis (tea) cultivar TRI2043 EST library

text: pDNR-LIB

characteristic: vector


text: Samuel Roberts Noble Foundation

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Total RNA was isolated separately from healthy leaves, leaf discs showing the translucent symptoms of blister blight disease, and leaf discs from healthy areas of infected leaves from blister blight resistant tea cultivars DT1. Equal amount of total RNA from these three samples were mixed together and the poly (A)+ RNA were isolated by using Oligotex mRNA Mini Kit. The Creator Smart cDNA Library Construction Kit were used for the cDNA library construction according to the manufacturer's instructions.

text: Camellia sinensis

text: leaf

text: Camellia sinensis (tea) cultivar DT1 EST library

text: pDNR-LIB


text: College of Life Sciences, Anhui Normal University

text: live

text: Generic

text: Wanjiang White goose

characteristic: breed

text: Anser cygnoides

text: female

characteristic: sex

text: ovarian

text: Differentially expressed genes in ovarian follicles of goose


text: Washington State University

text: live

text: Generic

text: cDNA library constructed from urediospores of Puccinia striiformis f.sp. tritici by using SMART cDNA Library Construction Kit (DB Clontech. USA) following the manufacturer's instructions.

characteristic: description

text: uredia stage

characteristic: dev-stage

characteristic: isolate

text: wheat

characteristic: lab-host

text: Puccinia striiformis f. sp. tritici

text: Puccinia striiformis f. sp. tritici urediniospore cDNA library

text: Plasmid

text: pDNR-LIB cloning vector


small RNA sequencing - w1 x Har 21day

characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Drosophila melanogaster

text: small RNA sequencing - w1 x Har 21 day

characteristic: title


small RNA sequencing - Har x w1 2-4 day

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Drosophila melanogaster

characteristic: organism

text: small RNA sequencing - Har x w1 2-4 day


small RNA sequencing - Har x w1 21 day

characteristic: INSDC last update

text: live

text: Generic

text: Drosophila melanogaster

text: small RNA sequencing - Har x w1 21 day


name: genomic DNA sequencing - w1 x Har 2-4 day

text: live

characteristic: INSDC status

text: Generic

text: Drosophila melanogaster


name: genomic DNA sequencing - w1 x Har 21 day

text: live

text: Generic

characteristic: NCBI submission model

text: Drosophila melanogaster


name: genomic DNA sequencing - Har x w1 2-4 day

text: live

text: Generic

characteristic: NCBI submission package

text: Drosophila melanogaster

text: genomic DNA sequencing - (w1 x Har) x w1 21 day


name: genomic DNA sequencing - Har x w1 21 day

text: live

text: Generic

text: Drosophila melanogaster

text: genomic DNA sequencing - Har


genomic DNA sequencing - w1

text: live

text: Generic

text: Drosophila melanogaster

text: genomic DNA sequencing - w1


T5 Wheat

text: University of California, Davis - Comai Lab

text: live

text: Generic

text: Triticum turgidum subsp. durum

text: durum

characteristic: sub species

text: Wheat TILLING


text: UT Austin

text: live

text: Generic

text: Escherichia coli B str. REL606

characteristic: strain

text: Evolved E. coli isolate EcA8


text: UT Austin

text: live

text: Generic

text: Escherichia coli B str. REL606

text: Evolved E. coli isolate EcC3


text: UT Austin

text: live

text: Generic

text: Escherichia coli B str. REL606

text: Evolved E. coli isolate EcC4


text: UT Austin

text: live

text: Generic

text: Escherichia coli B str. REL606

text: Evolved E. coli isolate EcF6


text: UT Austin

text: live

text: Generic

text: Escherichia coli B str. REL606

text: Evolved E. coli isolate EcH2


text: UT Austin

text: live

text: Generic

text: Escherichia coli B str. REL606

text: Evolved E. coli isolate EcD4


peanut

text: peanut research institute

text: live

text: Generic

characteristic: cultivar

text: Mixed peanut tissues (leaf, stem, root and seed)

characteristic: description

text: Arachis hypogaea

text: pooled: leaf, stem, root, seed

characteristic: tissue

text: Arachis hypogaea cv. Huayu19


text: Gordon, Pathology & Immunology, Washington University

text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

characteristic: sample type

text: the feces of a human subject (subject F1T1, timepoint Pre4) 4 weeks prior to their first consumption of a fermented milk product (Danone, Activia).

characteristic: source

text: human feces

text: human feces TSDA1.1


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F1T1, timepoint Pre2) 2 weeks prior to their first consumption of a fermented milk product (Danone, Activia).

text: human feces

text: human feces TSDA1.2


text: live

text: Generic

characteristic: SRA accession

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F1T1, timepoint Pre1) 1 week prior to their first consumption of a fermented milk product (Danone, Activia).

text: human feces

text: human feces TSDA1.3

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: human feces

text: human feces TSDA1.3_long


characteristic: INSDC last update

text: live

text: Generic

text: human gut metagenome

characteristic: organism

text: feces of a human subject

text: the feces of a human subject (subject F1T1, timepoint FMP1) who had been consuming 2 servings of a fermented milk product (Danone, Activia) daily for 1 week.

text: human feces

text: human feces TSDA1.4


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: human gut metagenome

text: feces of a human subject

text: human feces

text: human feces TSDA1.4_long


text: live

text: Generic

characteristic: NCBI submission package

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F1T1, timepoint FMP4) who had been consuming 2 servings of a fermented milk product (Danone, Activia) daily for 4 weeks.

text: human feces

text: human feces TSDA1.6


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F1T1, timepoint Post4) 4 weeks after their completion of a 7-week consumption regimen consisting of two daily servings of a fermented milk product (Danone, Activia).

text: human feces

text: human feces TSDA1.9


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F5T2, timepoint Pre1) 1 week prior to their first consumption of a fermented milk product (Danone, Activia).

text: human feces

text: human feces TSDA10.3_long


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F5T2, timepoint FMP1) who had been consuming 2 servings of a fermented milk product (Danone, Activia) daily for 1 week.

text: human feces

text: human feces TSDA10.4_long


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F1T2, timepoint Pre4) 4 weeks prior to their first consumption of a fermented milk product (Danone, Activia).

text: human feces

text: human feces TSDA2.1


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F1T2, timepoint Pre2) 2 weeks prior to their first consumption of a fermented milk product (Danone, Activia).

text: human feces

text: human feces TSDA2.2


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F1T2, timepoint Pre1) 1 week prior to their first consumption of a fermented milk product (Danone, Activia).

text: human feces

text: human feces TSDA2.3


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: human feces

text: human feces TSDA2.3_long


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F1T2, timepoint FMP1) who had been consuming 2 servings of a fermented milk product (Danone, Activia) daily for 1 week.

text: human feces

text: human feces TSDA2.4


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: human feces

text: human feces TSDA2.4_long


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F1T2, timepoint FMP4) who had been consuming 2 servings of a fermented milk product (Danone, Activia) daily for 4 weeks.

text: human feces

text: human feces TSDA2.6


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F1T2, timepoint Post2) 2 weeks after their completion of a 7-week consumption regimen consisting of two daily servings of a fermented milk product (Danone, Activia).

text: human feces

text: human feces TSDA2.8


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F1T2, timepoint Post4) 4 weeks after their completion of a 7-week consumption regimen consisting of two daily servings of a fermented milk product (Danone, Activia).

text: human feces

text: human feces TSDA2.9


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F3T1, timepoint Pre1) 1 week prior to their first consumption of a fermented milk product (Danone, Activia).

text: human feces

text: human feces TSDA5.3


text: Gordon, Pathology & Immunology, Washington University

text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F3T1, timepoint FMP4) who had been consuming 2 servings of a fermented milk product (Danone, Activia) daily for 4 weeks.

text: human feces

text: human feces TSDA5.6


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F5T1, timepoint Pre1) 1 week prior to their first consumption of a fermented milk product (Danone, Activia).

text: human feces

text: human feces TSDA9.3_long


text: live

text: Generic

text: human gut metagenome

text: feces of a human subject

text: the feces of a human subject (subject F5T1, timepoint FMP1) who had been consuming 2 servings of a fermented milk product (Danone, Activia) daily for 1 week.

text: human feces

text: human feces TSDA9.4_long


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 14 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).

text: mouse feces

text: mouse feces NM1200_1.14


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 15 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 1 day prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).

text: mouse feces

text: mouse feces NM1200_1.15


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 42 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 27 and 28 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).

text: mouse feces

text: mouse feces NM1200_1.42


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_2.14


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_2.15


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_2.42


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_3.14


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_3.15


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_3.42


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_4.14


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_4.15


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_4.42


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_5.14


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_5.15


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_5.42


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_6.14


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_6.15


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 35 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 13, 14, 20 and 21 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).

text: mouse feces

text: mouse feces NM1200_6.35


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: the fecal pellet of a mouse (C57Bl/6J) colonized with 15 species of gut bacteria (B. caccae, B. ovatus, B. thetaiotaomicron, B. uniformis, B. vulgatus, B. WH2, C. aerofaciens, C. scindens, C. spiroforme, D. longicatena, E. rectale, F. prausnitzii, P. distasonis, R. obeum, R. torques) 36 days prior which was also gavaged with 5 fermented milk strains (B. animalis subsp. lactis, L. lactis subsp. cremoris, two strains of L. delbrueckii subsp. bulgaricus, S. thermophilus) 1, 14, 15, 21, and 22 days prior. Mouse was fed B&K rat and mouse autoclavable chow #7378000, Zeigler Bros., Inc.).

text: mouse feces

text: mouse feces NM1200_6.36


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_6.42


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_7.14


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_7.15


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_7.35


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_7.36


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_7.42


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_8.14


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_8.15


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_8.35


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_8.36


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_8.42


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_9.14


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_9.15


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_9.35


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_9.36


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_9.42


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_10.14


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_10.15


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_10.35


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_10.36


text: live

text: Generic

text: Bacteroides

text: fecal pellet of a mouse

text: mouse feces

text: mouse feces NM1200_10.42


text: Institute of Molecular Oncology, BSRC A. Fleming

text: live

text: Generic

characteristic: cell passage

text: Synovial fibroblast

characteristic: cell type

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: Synovial fibroblast

text: CBA/J * C57BL/6/J

characteristic: strain

text: Synovial fibroblast_WT_1


text: live

text: Generic

text: Synovial fibroblast

text: wild type

text: Mus musculus

text: Synovial fibroblast

text: CBA/J * C57BL/6/J

text: Synovial fibroblast_WT_2


text: live

text: Generic

text: Synovial fibroblast

text: TghuTNF

text: Mus musculus

text: Synovial fibroblast

text: CBA/J * C57BL/6/J

text: Synovial fibroblast_Tg_1


text: live

text: Generic

text: Synovial fibroblast

text: TghuTNF

text: Mus musculus

text: Synovial fibroblast

text: CBA/J * C57BL/6/J

text: Synovial fibroblast_Tg_2


text: Cambridge Institue for Medical Research

text: live

text: Generic

text: dimethyl-Histone H3 (Lys4)

characteristic: antibody

text: Upstate

characteristic: antibody vendor

characteristic: background strain

text: Compromises GMPs (Granulocytic-monocytic-progenitors), CMPs (Common-myeloid-progenitors) and MEPs (Megakaryocytic-erythroid progenitors)

text: Gfi1 36S

characteristic: fusion protein/snp

text: Mus musculus

text: Lin-Sca1-cKit+ cells


characteristic: External Id

text: Cambridge Institue for Medical Research

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: dimethyl-Histone H3 (Lys4)

text: Upstate

text: Gfi1 36N

text: Mus musculus

text: Lin-Sca1-cKit+ cells


text: Cambridge Institue for Medical Research

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: abcam

text: Factor-dependent cells capable of sustained growth in liquid medium containing RPMI/10%FCS/1%PenStrep, supplemented with 6ng/ml of recombinant interleukin 3

text: MLL-ENL

text: Mus musculus

text: MLL-ENL immortalized bone marrow progenitor cells

characteristic: title


text: F.M. Kirby Neurobiology Center, CHB

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Embyonic (E14) neural stem cells (eNSCs)

text: Anti Ezh2 [Diagenode (http://www.diagenode.com/en/index.php); Cat. no.: CS-039-100; Lot no.: 001]

characteristic: chip antibody

text: Mus musculus

characteristic: organism

text: 2-3 (cultured as neurospheres)

characteristic: passage

text: Neural stem cells (NSCs)


text: F.M. Kirby Neurobiology Center, CHB

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: pOLs from postnatal (P2) brain (p2-pOLs)

characteristic: cell type

text: Mus musculus

text: 0 (single time monolayer cultures)

text: Pre-myelinating oligodendrocytes (pOLs)


text: F.M. Kirby Neurobiology Center, CHB

text: live

text: Generic

text: eNSCs & p2-pOLs

text: IgG (isotypic control antibody) [Abcam; Cat. no.: ab46540]

text: Mus musculus

text: eNSCs: 2-3 & p2-pOLs: 0

text: NSCs & pOLs

characteristic: strain

text: IgG-ChIP-Seq-Control


text: 4 Floor., Departamento de Biologia Celular, Fisiologia e Inmunologia, Universidad de Barcelona

text: live

text: Generic

text: Esrrb

characteristic: antibody

text: R&D systems

characteristic: antibody vendor

text: Chromatin IP

characteristic: fraction

text: Mus musculus

text: Mouse ES

text: 1_Esrrb ChIP-Seq_mES_sequence


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input DNA

text: Mus musculus

text: Mouse ES

text: 2_Input DNA_mES_sequence


characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Abcam

text: Esrrb_Rescue Clone

text: Chromatin IP

text: Mus musculus

text: Mouse ES

characteristic: time point

text: 3_H3K4me3_ChIP_Seq_Day0_mES_s_8_sequence


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Abcam

text: Esrrb_Rescue Clone

text: Chromatin IP

text: Mus musculus

text: Mouse ES

text: 4_H3K4me3_ChIP_Seq_Day1_mES_s_1_sequence

characteristic: title


text: live

characteristic: INSDC status

text: Generic

text: Abcam

text: Esrrb_Rescue Clone

text: Chromatin IP

text: Mus musculus

characteristic: organism

text: Mouse ES

text: 5_H3K4me3_ChIP_Seq_Day3_mES_s_4_sequence


text: live

text: Generic

characteristic: NCBI submission model

text: Abcam

text: Esrrb_Rescue Clone

text: Chromatin IP

text: Mus musculus

text: Mouse ES

text: 6_H3K4me3_ChIP_Seq_Day5_mES_s_6_sequence


text: live

text: Generic

characteristic: NCBI submission package

text: Upstate

text: Esrrb_Rescue Clone

text: Chromatin IP

text: Mus musculus

text: Mouse ES

text: 7_H3K27me3_ChIP_Seq_Day0_mES_s_8_sequence


text: live

text: Generic

text: Upstate

text: Esrrb_Rescue Clone

characteristic: cell type

text: Chromatin IP

text: Mus musculus

text: Mouse ES

text: 8_H3K27me3_ChIP_Seq_Day1_mES_s_3_sequence


text: live

text: Generic

text: Upstate

text: Esrrb_Rescue Clone

text: Chromatin IP

text: Mus musculus

text: Mouse ES

characteristic: strain

text: 9_H3K27me3_ChIP_Seq_Day3_mES_s_5_sequence


text: live

text: Generic

characteristic: antibody

text: Upstate

text: Esrrb_Rescue Clone

text: Chromatin IP

text: Mus musculus

text: Mouse ES

text: 10_H3K27me3_ChIP_Seq_Day5_mES_s_8_sequence


text: live

text: Generic

text: Esrrb_Rescue Clone

text: Input DNA

text: Mus musculus

text: Mouse ES

text: 11_Input DNA_Day0_mES_s_4_sequence


text: live

text: Generic

text: Esrrb_Rescue Clone

text: Input DNA

text: Mus musculus

text: Mouse ES

text: 12_Input DNA_Day1_mES_s_4_sequence


text: live

text: Generic

text: Esrrb_Rescue Clone

text: Input DNA

text: Mus musculus

text: Mouse ES

text: 13_Input DNA_Day3_mES_s_5_sequence


text: live

text: Generic

text: Esrrb_Rescue Clone

text: Input DNA

text: Mus musculus

text: Mouse ES

text: 14_Input DNA_Day5_mES_s_6_sequence


text: Hematology, University Hospital Regensburg

text: live

text: Generic

text: Blood monocytes

characteristic: chip antibody

text: Homo sapiens

text: Blood monocytes

text: MO H3K4me1


text: live

text: Generic

text: Blood monocytes

text: Homo sapiens

text: Blood monocytes

text: MO H2AZ


text: live

text: Generic

text: Blood monocytes

text: Homo sapiens

text: Blood monocytes

text: MO H3K27ac


text: live

text: Generic

text: Blood monocytes

text: Homo sapiens

text: Blood monocytes

text: MO PU.1


text: live

text: Generic

text: Blood monocytes

text: C/EBPbeta

text: Homo sapiens

text: Blood monocytes

text: MO C/EBPbeta


text: live

text: Generic

text: Blood monocytes/macrophages

text: IgG

text: Homo sapiens

text: Blood monocytes/macrophages

text: IgG


text: live

text: Generic

text: Monocyte-derived macrophage

text: Homo sapiens

text: Monocyte-derived macrophage

text: MAC H3K4me1


text: live

text: Generic

text: Monocyte-derived macrophage

text: Homo sapiens

text: Monocyte-derived macrophage

text: MAC H2AZ


text: live

text: Generic

text: Monocyte-derived macrophage

text: Homo sapiens

text: Monocyte-derived macrophage

text: MAC H3K27ac


text: live

text: Generic

text: Monocyte-derived macrophage

text: Homo sapiens

text: Monocyte-derived macrophage

text: MAC PU.1


text: live

text: Generic

text: Monocyte-derived macrophage

text: C/EBPbeta

text: Homo sapiens

text: Monocyte-derived macrophage

text: MAC C/EBPbeta


text: live

text: Generic

text: Monocyte-derived macrophage

text: Homo sapiens

text: Monocyte-derived macrophage

text: MAC EGR2


text: live

text: Generic

text: Monocyte-derived macrophage

text: Homo sapiens

text: Monocyte-derived macrophage

text: MAC EGR2 2


text: Cancer Research Group, Beijing Genomics Institute

text: live

text: Generic

text: cancer

characteristic: cancer or normal

text: transitional

text: Homo sapiens

text: bladder, cancer


characteristic: External Id

text: live

text: Generic

text: normal

text: transitional

text: Homo sapiens

text: bladder, normal


characteristic: INSDC secondary accession

text: live

text: Generic

text: cancer

text: testicular germ

text: Homo sapiens

text: testicular, cancer


characteristic: INSDC center name

text: live

text: Generic

text: normal

text: testicular germ

text: Homo sapiens

text: testicular, normal


text: Henikoff, Basic Sciences, Fred Hutchinson Cancer Research Center

text: live

text: Generic

characteristic: SRA accession

text: adult

characteristic: age

text: muscle cell

text: Caenorhabditis elegans

text: INTACT affinity-purified muscle nuclei

characteristic: sample type

text: INTACT-purified muscle nuclei

text: Muscle nuclei DNA 1 (IP20_20110313_7)


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: adult

text: Caenorhabditis elegans

text: total nuclei

text: total nuclei

text: whole organism

characteristic: tissue

text: Total nuclei DNA 1 (Nuc10_20110313_3)


text: Institute of Microbiology, College of Life Sciences, Zhejiang University

text: live

characteristic: INSDC status

text: Generic

text: Labortory strain

characteristic: application

text: Saccharomyces cerevisiae

characteristic: organism

text: Yeast S. cerevisiae strain BYZ1

text: BYZ1(MATa/MATalpha his3delta1/his3delta1 leu2delta0/leu2delta0 lys2delta0/+ met15delta0/+ ura3delta0/ura3delta0)

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Bioethanol strain

text: Saccharomyces cerevisiae

text: Yeast S. cerevisiae strain YJS329

text: Wide type

characteristic: strain


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF Egg

characteristic: colony

text: Camponotus floridanus

text: whole individuals

text: CF Egg replicate 1 (GA)


characteristic: External Id

text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF Egg

text: Camponotus floridanus

text: whole individuals

text: CF Egg replicate 2 (GA)


text: Bioinformatics, BGI-SHENZHEN

characteristic: INSDC secondary accession

text: live

text: Generic

text: CF Egg

text: Camponotus floridanus

text: whole individuals

text: CF Egg replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

characteristic: INSDC center name

text: live

text: Generic

text: CF Major

text: Camponotus floridanus

text: whole individuals

text: CF Major replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

characteristic: SRA accession

text: CF Major

text: Camponotus floridanus

text: whole individuals

text: CF Major replicate 2 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF Major

text: Camponotus floridanus

text: whole individuals

text: CF Major replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF Minor

text: Camponotus floridanus

text: whole individuals

text: CF Minor replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF Minor

text: Camponotus floridanus

text: whole individuals

text: CF Minor replicate 2 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF Minor

text: Camponotus floridanus

text: whole individuals

text: CF Minor replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF Queen

text: Camponotus floridanus

text: whole individuals

text: CF Queen replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF Queen

text: Camponotus floridanus

text: whole individuals

text: CF Queen replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF virginQueen

text: Camponotus floridanus

text: whole individuals

text: CF virginQueen replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF virginQueen

text: Camponotus floridanus

text: whole individuals

text: CF virginQueen replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF control

text: Camponotus floridanus

text: whole individuals

text: CF control (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF larva

text: Camponotus floridanus

text: whole individuals

text: CF larva replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF larva

text: Camponotus floridanus

text: whole individuals

text: CF larva replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF male

text: Camponotus floridanus

text: whole individuals

text: CF male replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF male

text: Camponotus floridanus

text: whole individuals

text: CF male replicate 2 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: CF male

text: Camponotus floridanus

text: whole individuals

text: CF male replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS Larva

text: Harpegnathos saltator

text: whole individuals

text: HS Larva replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS Larva

text: Harpegnathos saltator

text: whole individuals

text: HS Larva replicate 1 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS Larva

text: Harpegnathos saltator

text: whole individuals

text: HS Larva replicate 2 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS Larva

text: Harpegnathos saltator

text: whole individuals

text: HS Larva replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS Queen

text: Harpegnathos saltator

text: whole individuals

text: HS Queen replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS Queen

text: Harpegnathos saltator

text: whole individuals

text: HS Queen replicate 1 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS Queen

text: Harpegnathos saltator

text: whole individuals

text: HS Queen replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS virginQueen

text: Harpegnathos saltator

text: whole individuals

text: HS virginQueen replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS virginQueen

text: Harpegnathos saltator

text: whole individuals

text: HS virginQueen replicate 1 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS virginQueen

text: Harpegnathos saltator

text: whole individuals

text: HS virginQueen replicate2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS control

text: Harpegnathos saltator

text: whole individuals

text: HS control (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS egg

text: Harpegnathos saltator

text: whole individuals

text: HS egg replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS egg

text: Harpegnathos saltator

text: whole individuals

text: HS egg replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS gamergater

text: Harpegnathos saltator

text: whole individuals

text: HS gamergater replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS gamergater

text: Harpegnathos saltator

text: whole individuals

text: HS gamergater replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS male

text: Harpegnathos saltator

text: whole individuals

text: HS male replicate 1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS male

text: Harpegnathos saltator

text: whole individuals

text: HS male replicate 2 (HiSeq)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS worker

text: Harpegnathos saltator

text: whole individuals

text: HS worker replicate1 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS worker

text: Harpegnathos saltator

text: whole individuals

text: HS worker replicate 2 (GA)


text: Bioinformatics, BGI-SHENZHEN

text: live

text: Generic

text: HS worker

text: Harpegnathos saltator

text: whole individuals

text: HS worker replicate 2 (HiSeq)


text: 308, Genomics and Molecular Medicine Unit, Institute of Genomics & Integrative Biology

text: live

text: Generic

text: Adult

characteristic: age

characteristic: antibody

characteristic: antibody batch number

text: Eurogentec

characteristic: antibody vendor

text: Rattus norvegicus

text: WNIN

text: liver


text: Laboratory of developmental genomics, School of Life Sciences, EPFL

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: forebrain cells

characteristic: cell type

characteristic: chip antibody

text: Mus musculus

text: Forebrain cells

text: H3K27me3 forebrain ChIPSeq


text: live

characteristic: INSDC status

text: Generic

text: forebrain cells

text: Millipore

characteristic: chip antibody manufacturer

text: Mus musculus

characteristic: organism

text: Forebrain cells

text: H3K4me3 forebrain ChIPSeq

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: anterior trunk cells

text: Millipore

text: Mus musculus

text: Anterior trunk cells

characteristic: strain

text: H3K27me3 anterior trunk ChIPSeq


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: anterior trunk cells

text: Millipore

text: Mus musculus

text: Anterior trunk cells

text: H3K4me3 anterior trunk ChIPSeq


text: live

text: Generic

characteristic: SRA accession

characteristic: age

text: anterior trunk cells

text: Mus musculus

text: Anterior trunk cells

text: anterior trunk input DNA


text: Cell and Molecular Biology, Lawrence Berkeley National Laboratory

text: live

text: Generic

text: Santa Kruz Biotechnology Inc.

characteristic: antibody vendor

text: sc126X [200mg/0.1ml]

characteristic: catalog number

characteristic: cell line

text: p53-specific DO1

text: Homo sapiens

characteristic: pdl

text: normal human lung fibroblasts


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: normal human lung fibroblasts

text: Input DNA


text: University of Warwick

text: live

characteristic: INSDC status

text: Generic

text: 7 weeks to 4 months

text: Naive CD4+ T cell

characteristic: cell type

text: Mus musculus

text: Mouse Naive CD4+ T cells

text: spleen

characteristic: tissue


text: University of Warwick

text: live

text: Generic

characteristic: NCBI submission model

text: 7 weeks to 4 months

text: T helper cell type 1 (Th1)

text: Mus musculus

characteristic: organism

text: Mouse Th1 cells

text: spleen

characteristic: title


characteristic: External Id

text: University of Warwick

text: live

text: Generic

characteristic: NCBI submission package

text: 7 weeks to 4 months

text: T helper cell type 17 (Th17)

text: Mus musculus

text: Mouse Th17 cells

characteristic: strain

text: spleen


text: University of Warwick

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: 7 weeks to 4 months

text: 400bp (standard deviation: 20bp)

characteristic: average fragment length

text: Induced T regulatory cell (iTreg)

text: Mus musculus

text: Mouse iTreg cells

text: spleen


text: University of Warwick

text: live

text: Generic

text: 7 weeks to 4 months

characteristic: age

text: 400bp (standard deviation: 20bp)

text: Natural T regulatory cell (nTreg)

text: Mus musculus

text: Mouse nTreg cells

text: spleen


text: John Rinn, Stem Cell and Regenerative Biology, Harvard University

text: live

text: Generic

text: RNaseP

characteristic: ivt rna

text: SHAPE-Seq

characteristic: library strategy

text: Bacillus subtilis

text: IVT

text: RNaseP barcode library


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: RNaseP, pT181 variant

text: SHAPE-Seq

text: Bacillus subtilis

text: IVT

text: RNaseP, pT181 variant library


text: LPG, NCI/CCR, NIH

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

characteristic: strain background

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 3273


text: LPG, NCI/CCR, NIH

text: live

text: Generic

characteristic: NCBI submission model

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

characteristic: tissue

text: MOLF backcross animal 3427


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

characteristic: organism

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 3540

characteristic: title


characteristic: External Id

text: LPG, NCI/CCR, NIH

text: live

text: Generic

characteristic: NCBI submission package

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 3654


text: LPG, NCI/CCR, NIH

characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 3871


text: LPG, NCI/CCR, NIH

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 3939


text: LPG, NCI/CCR, NIH

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4016


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4020


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4030


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4036


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4038


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4042


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4139


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4142


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4144


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4150


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4164


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4262


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4315


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4357


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4378


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4438


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4459


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4461


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4488


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4492


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4511


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4516


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4547


text: LPG, NCI/CCR, NIH

text: live

text: Generic

text: Mus musculus

text: PyMT-induced mammary tumor

text: ((MOLF x PyMT) x FVB) backcross animal

text: MOLF x PyMT backcross mammary tumor

text: MOLF backcross animal 4638


name: 1130893183206 Aspergillus fumigatus Af10 genomic DNA AF10-F-ILI1-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Random size-selected DNA fragments of Aspergillus fumigatus Af10 genomic DNA

characteristic: description

text: Aspergillus fumigatus Af10

text: Generic sample from Aspergillus fumigatus Af10


text: Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research

text: live

text: Generic

characteristic: cell line

text: enriched DNA

characteristic: enrichment

text: Homo sapiens

text: T47D cell line

characteristic: timepoint

text: T47D-overexpressing ELF5-ELF5 DNA-24hours-rep1

text: doxycycline

characteristic: treatment


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: enriched DNA

text: Homo sapiens

text: T47D cell line

text: T47D-overexpressing ELF5-ELF5 DNA-48hours-rep1

text: doxycycline


text: Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC)

text: live

characteristic: INSDC status

text: Generic

text: Rabbit polyclonal

characteristic: antibody

text: HeLa cells

characteristic: cell type

characteristic: chip antibody

text: Homo sapiens

text: HeLa

text: Laszlo Tora

characteristic: vendor


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal

text: B lymphoblasts

text: Homo sapiens

characteristic: organism

text: GM_SPT20-chip-seq r1

characteristic: title

text: Laszlo Tora


text: IGBMC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: F9 embryonal carcinoma cells

text: polyclonal anti-RXRa

text: in-house antibody [generated by immunization of rabbits with the peptide mRXRa: PB105 (MDTKHFLPLDFSTQVNSSSLNSPTGRGC)]

characteristic: chip antibody supplier

text: Mus musculus

text: embryonal carcinoma cells


text: Cancer Genomics, Centre for Haemato-Oncology, Barts Cancer Institute

text: live

text: Generic

characteristic: cytogenetic

text: 5- methyl cytosine (Diagenode.sa, MAb-081-100, Lot/batch DA-0016)

characteristic: medip antibody

text: Homo sapiens

text: DNA of AML patient

characteristic: sample type

text: PB (peripheral blood)


characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Normal karyotype (NK)

text: Homo sapiens

text: DNA of AML patient

text: Bone marrow


text: live

text: Generic

text: Normal karyotype (NK)

text: Homo sapiens

text: DNA of AML patient

text: PB (peripheral blood)


text: live

text: Generic

text: Homo sapiens

text: DNA of AML patient

text: Bone marrow


text: live

text: Generic

text: trisomy 8

text: Homo sapiens

text: DNA of AML patient

text: PB (peripheral blood)


text: live

text: Generic

text: control NBM

text: Homo sapiens

text: DNA of a healthy donor

text: Bone marrow


text: live

text: Generic

text: control NBM

text: Homo sapiens

text: DNA of non infiltering follicular lymphoma patient

text: Bone marrow


text: Michael McManus, Diabetes Center, UCSF

text: live

text: Generic

characteristic: cell line

text: embryonic stem cells

characteristic: cell type

text: Homo sapiens

text: H9 hESC

text: H9 Small RNA, 76 cycles


characteristic: External Id

text: Nicchitta, Biochemistry, Duke University

text: live

text: Generic

text: Homo sapiens

text: Purified endoplasmic reticulum

characteristic: sample fraction

text: ER mRNA


text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

characteristic: organism

text: Purified endoplasmic reticulum

text: ER footprints


characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: Purified cytoplasm

text: Cyt mRNA

characteristic: title


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: Purified cytoplasm

text: Cyt footprints


text: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

text: live

text: Generic

text: Hu

characteristic: breed

text: Ovis aries

text: female

characteristic: sex

text: ovary

characteristic: tissue-type

text: Oestrous sheep ovary subtractive cDNA library


text: Kagoshima University

text: live

text: Generic

text: Coturnix japonica

text: Coturnix japonica DNA (Shimogiri T)


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: SRA accession

characteristic: description

text: ATCC 51507

characteristic: strain

text: Generic sample from Desulfitobacterium dehalogenans ATCC 51507


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Mycobacteroides abscessus subsp. bolletii 1S-153-0915

text: Mycobacterium massiliense 1S-153-0915


OmeprazoleGIeffects

characteristic: External Id

text: Medical Biofilm Research Institute

text: live

text: Generic

text: The effect of the proton-pump inhibitor omeprazole on gastrointestinal bacteria was evaluated. Eight healthy 9-month-old dogs (4 males and 4 females) received omeprazole (1.1 mg/kg) orally twice a day for 15 days. Fecal samples and endoscopic biopsies from the stomach and duodenum were obtained on days 30 and 15 before omeprazole administration, on day 15 (last day of administration), and 15 days after the end of administration. The microbiota was evaluated using 16S rRNA gene 454-pyrosequencing, fluorescent in situ hybridization, and qPCR. In the stomach, pyrosequencing revealed a higher bacterial richness (p=0.0021) and a decrease in Helicobacter organisms during omeprazole administration (median: 92%, median before and after: &gt;98%, p=0.0336) which was accompanied by a higher abundance of Firmicutes and Fusobacteria. FISH confirmed this effect of omeprazole on gastric Helicobacter (p&lt;0.0001). In the duodenum, FISH showed an increase in total bacteria (p=0.0033) and pyrosequencing a consistent increase in Lactobacillus and Enterococcus during omeprazole in the male dogs. In feces, qPCR showed an increase in Lactobacillus during omeprazole (p&lt;0.0001), which was accompanied, in the males, by a lower abundance of Faecalibacterium and Bacteroides. This study suggests that orally administered omeprazole can alter the abundance of the gastrointestinal microbiota in healthy dogs.

text: Bacteria

text: Effect of the proton pump inhibitor omeprazole on the gastrointestinal bacterial microbiota of healthy dogs as evaluated by molecular techniques


CCA sequencing set 1

text: National Cancer Centre Singapore

text: live

text: Generic

text: human bile duct tumor from Opisthorchis viverrini related cholangiocarcinoma (CCA) patient paired tumor set 1. Clinical information on the patients evaluated in this study was obtained from the Srinagarind Hospital, Khonkean Thailand. Informed consent was obtained from each subjects and the Human Research Ethics Committee, Khon Kaen University approved our research protocol (HE471214). Clinicopathological features of CCA patients including age, sex, histological grading, and pTNM stage (AJCC 6th Edition) were evaluated retrospectively by reviewing the medical charts and pathological records and compared with mutational status.

characteristic: disease

text: Homo sapiens

text: human bile duct tumor from Opisthorchis viverrini related cholangiocarcinoma (CCA) patient-Normal Samples


text: live

text: Generic

characteristic: NCBI submission model

text: LMG P-21439

text: Generic sample from Desulfitobacterium dichloroeliminans LMG P-21439


Gossypium hirsutum Coker

text: Alabama A&M University

text: live

text: Generic

text: Roche 454 FLX pyrosequencing data from Gossypium hirsutum cv. Coker (cotton) following cotton root infection with Rotylenchulus reniformis (reniform nematode).

text: Gossypium hirsutum

characteristic: organism

text: Comparative transcriptome profiling of three Gossypium species during early reniform nematode infection


Gossypium arboreum

text: Alabama A&M University

characteristic: INSDC center name

text: live

text: Generic

text: Roche 454 FLX pyrosequencing data from Gossypium arboreum (cotton) following cotton root infection with Rotylenchulus reniformis (reniform nematode).

text: Gossypium arboreum


Gossypium barbadense

text: Alabama A&M University

text: live

text: Generic

text: Roche 454 FLX pyrosequencing data from Gossypium barbadense(cotton) following cotton root infection with Rotylenchulus reniformis (reniform nematode).

text: Gossypium barbadense

characteristic: title


Gossypium hirsutum 1218

text: Alabama A&M University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Roche 454 FLX pyrosequencing data from Gossypium hirsutum cv. 1218 (cotton) following cotton root infection with Rotylenchulus reniformis (reniform nematode).

text: Gossypium hirsutum


text: J. Craig Venter Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Illumina fragments

text: Burkholderia multivorans CGD1

text: Generic sample from Burkholderia multivorans CGD1


text: J. Craig Venter Institute

text: live

text: Generic

text: Illumina fragments

text: Burkholderia multivorans CGD2

text: Generic sample from Burkholderia multivorans CGD2


text: Tibet Academy of Agriculture and Animal Husbandry Sciences

text: live

text: Generic

text: Total RNA was extracted by Trizol, then reverse transcription was conducted by A-MLV reverse transcriptase; then double strand cDNA was synthesized and digested by RsaI; cloned into pGEM-T EASY vector and transformed to E coli strain DH5alpha, sequencing were conducted by Sp6 or T7 primer at LiCOR4200 DNA Sequencer.

text: young leaves

characteristic: dev-stage

text: Hordeum vulgare subsp. vulgare

text: leaves

text: SSH sequences in leaves of rehydrated Tibetan hulless barley after drought


text: Baylor College of Medicine

text: live

text: Generic

text: Drosophila biarmipes

text: Drosophila biarmipes

characteristic: stock number

text: Drosophila biarmipes


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: DSM 15288

text: Generic sample from Desulfitobacterium metallireducens DSM 15288


text: live

text: Generic

text: Desulfosporosinus acidiphilus SJ4

text: Desulfosporosinus acidiphilus SJ4

text: 454 sequencing of Desulfosporosinus acidiphilus SJ4


text: University of Calgary - Sun Center of Excellence for Visual Genomics

text: live

text: Generic

text: ESTs derived from stems of Chelidonium majus.

text: Chelidonium majus


text: Yonsei University

text: live

text: Generic

text: River sediment samples from Wonju Stream located in Wonju City, South Korea. WJI1, WJI2: 16S rRNA sequences from the original river sediments WJ-1A, WJ-1B: 16S rRNA sequences from PCE-to-ethene dechlorinating microcosms WJ-2A, WJ-2B: 16S rRNA sequences from TCE-to-ethene dechlorinating microcosms WJ-1_vcrA is vcrA genes (reductive dehalogenase genes) from PCE-to-ethene dechlorinating microcosms and WJ-2_vcrA is vcrA genes from TCE-to-ethene dechlorinating microcosms.

text: sediment metagenome

text: PCE/TCE dechlorinating microbial community and dehalogenase genes from Wonju Stream, South Korea


Keffir Grains

text: Universidade Federal do Rio de Janeiro

text: live

text: Generic

text: The aim of this work was evaluate the microbial diversity and community structure of three distinct kefir grains collected in Brazil by using barcode pyrosequencing. For pyrosequencing, the universal primers Y1 and Y2 with 454-adaptors, followed by a 10-bp sample-specific barcode were used for amplification and sequencing.

text: soil metagenome

text: Keffir Grains


text: live

text: Generic

text: Spathaspora passalidarum NRRL Y-27907 pooled conditions

text: normalized

characteristic: library description

text: normalized

characteristic: library type

text: Spathaspora passalidarum NRRL Y-27907

text: NRRL Y-27907

text: Generic sample from Spathaspora passalidarum NRRL Y-27907


text: Baylor College of Medicine

text: live

text: Generic

characteristic: SRA accession

text: Drosophila bipectinata

characteristic: description

text: Drosophila bipectinata

text: Drosophila bipectinata


text: Department of Biology, Boston University

characteristic: INSDC first public

text: live

text: Generic

text: 7-8 weeks old

characteristic: age

text: STAT5 antibody C-17

characteristic: chip antibody

text: Santa Cruz Biotechnology, Inc

characteristic: chip antibody vendor

text: Mus musculus

text: male

characteristic: sex

text: liver tissue

characteristic: strain


characteristic: External Id

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 7-8 weeks old

text: STAT5 antibody C-17

text: Santa Cruz Biotechnology, Inc

text: Mus musculus

characteristic: organism

text: female

text: liver tissue


characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: 7-8 weeks old

text: Bcl6 antibody N-3

text: Santa Cruz Biotechnology, Inc

text: Mus musculus

text: male

text: liver tissue

characteristic: title


text: live

text: Generic

characteristic: SRA accession

text: 7-8 weeks old

text: Bcl6 antibody N-3

text: Santa Cruz Biotechnology, Inc

text: Mus musculus

text: female

text: liver tissue


text: live

text: Generic

text: 7-8 weeks old

text: normal rabbit IgG

text: Santa Cruz Biotechnology, Inc

text: Mus musculus

text: male

text: liver tissue


text: ENCODE DCC

text: live

text: Generic

characteristic: antibody

text: Rabbit monoclonal

characteristic: antibody antibodydescription

text: TCF7L2 (formerly known as TCF4) is a member of the high mobility group (HMG) DNA binding protein family of transcription factors which consists of the following: Lymphoid enhancer factor 1 (LEF1), T Cell Factor 1 (TCF1), TCF3 and TCF4

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Cell Signaling Technology

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: liver carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit monoclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Cell Signaling Technology

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: colorectal carcinoma (PMID: 7214343)

text: cancer

text: endoderm

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: ChIP-Seq

text: USC

text: Fragmented using Bioruptor, precipitated with protein G magnetic beads,

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: tier 1

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit monoclonal

text: Cell Signaling Technology

text: ATCC

characteristic: cell

text: embryonic kidney. (PMID: 11967234)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: treatment description


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Desulfobacter postgatei 2ac9

characteristic: description

text: Desulfobacter postgatei 2ac9

characteristic: organism

characteristic: strain

text: Generic sample from Desulfobacter postgatei 2ac9

characteristic: title


text: University of Southern California

text: live

text: Generic

text: From population 1 of Tunisian collection

text: Medicago truncatula

text: Mtr WGS TN1.3


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN1.5


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN1.11


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN1.13


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN1.15


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN1.16


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN1.17


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN1.18


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN1.21


text: University of Southern California

text: live

text: Generic

text: From population 7 of Tunisian collection

text: Medicago truncatula

text: Mtr WGS TN7.2


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN7.4


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN7.11


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN7.13


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN7.17


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN7.18


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN7.19


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN7.20


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN7.23


text: University of Southern California

text: live

text: Generic

text: From population 8 of Tunisian collection

text: Medicago truncatula

text: Mtr WGS TN8.3


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN8.4


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN8.5


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN8.15


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN8.21


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN8.22


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN8.23


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN8.24


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN8.25


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN8.28


text: University of Southern California

text: live

text: Generic

text: From population 9 of Tunisian collection

text: Medicago truncatula

text: Mtr WGS TN9.3


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN9.4


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN9.5


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN9.12


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN9.15


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN9.17


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN9.20


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN9.21


text: University of Southern California

text: live

text: Generic

text: Medicago truncatula

text: Mtr WGS TN9.22


text: Broad Institute

text: live

text: Generic

text: Anopheles quadriannulatus

characteristic: sample name

text: SANGWE

text: Generic sample from Anopheles quadriannulatus


text: Broad Institute

text: live

text: Generic

text: Anopheles arabiensis

text: Dongola

text: Generic sample from Anopheles arabiensis


text: Broad Institute

text: live

text: Generic

text: Anopheles albimanus

text: Generic sample from Anopheles albimanus


PRJNA167910.NMR 29

text: Broad Institute

text: live

text: Generic

text: Female

characteristic: host sex

text: Heterocephalus glaber

text: NMR 29

text: Generic sample from Heterocephalus glaber


text: Broad Institute

text: live

text: Generic

characteristic: collection date

text: Kampala [Uganda]

characteristic: geographic location

text: human

characteristic: host

characteristic: isolate

text: Blood

characteristic: isolation source

text: Plasmodium falciparum UGK 659.1

text: Generic sample from Plasmodium falciparum UGK 659.1


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Kampala [Uganda]

text: human

text: Blood

text: Plasmodium falciparum UGK 432.4

text: Generic sample from Plasmodium falciparum UGK 432.4


text: Broad Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Kampala [Uganda]

text: human

text: Blood

text: Plasmodium falciparum UGK 674.4

text: Generic sample from Plasmodium falciparum UGK 674.4


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Kampala [Uganda]

text: human

text: Blood

text: Plasmodium falciparum UGK 661.1

characteristic: organism

characteristic: strain

text: Generic sample from Plasmodium falciparum UGK 661.1


text: Broad Institute

text: live

text: Generic

text: Kampala [Uganda]

text: human

text: Blood

text: Plasmodium falciparum UGK 730.2

characteristic: sample name

text: Generic sample from Plasmodium falciparum UGK 730.2

characteristic: title


text: Broad Institute

text: live

text: Generic

characteristic: collection date

text: Kampala [Uganda]

characteristic: geographic location

text: human

text: Blood

text: Plasmodium falciparum UGK 707.3

text: Generic sample from Plasmodium falciparum UGK 707.3


text: Broad Institute

text: live

text: Generic

text: Kampala [Uganda]

text: human

characteristic: host

characteristic: isolate

text: Blood

text: Plasmodium falciparum UGK 396.1

text: Generic sample from Plasmodium falciparum UGK 396.1


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Kampala [Uganda]

text: human

text: Blood

characteristic: isolation source

text: Plasmodium falciparum UGK 408.2

text: Generic sample from Plasmodium falciparum UGK 408.2


text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Kampala [Uganda]

text: human

text: Blood

text: Plasmodium falciparum UGK 815.1

text: Generic sample from Plasmodium falciparum UGK 815.1


text: Broad Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Kampala [Uganda]

text: human

text: Plasmodium falciparum UGK 443.2

text: Generic sample from Plasmodium falciparum UGK 443.2


plume transcripts

text: University of Michigan

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Samples were collected on a CTD cast in the Guaymas Basin. GD5 was collected at 1963 m and GD6 was collected at 1950 m. Both of these water samples were from within a hydrothermal vent plume.

characteristic: description

text: uncultured Candidatus Nitrosopumilus sp.

text: Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume


background transcripts

text: University of Michigan

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: These samples were collected in the Carmen Basin in the Gulf of California from a CTD cast. They are both what was called background samples as they are not in the hydrothermal vent plume in the Guaymas Basin. The purpose here was to compare community composition and gene expression with that seen in the deep sea plume. GD9 was collect at 1600 m and GD10 was collect at 1900 m depth.

characteristic: organism


Ziziphus celata transcriptome

text: ERDC, USACE

text: live

text: Generic

text: cDNA library made from pooled floral tissue from three genets of Ziziphus celata.

text: Pseudoziziphus celata

text: Ziziphus celata floral cDNA library

characteristic: title


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Mycobacteroides abscessus subsp. bolletii 2B-0107

characteristic: strain

text: Mycobacterium massiliense 2B-0107


text: Baylor College of Medicine

text: live

text: Generic

text: Drosophila elegans

text: Drosophila elegans

characteristic: stock number

text: Drosophila elegans


text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. C236-11

text: C236-11_Tube 2_A

characteristic: sample id

text: Genomic DNA

characteristic: sample type

text: Other

characteristic: sex

text: E. coli C236-11 Genomic DNA sample C236-11_Tube 2_A


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. C227-11

text: C227-11_Tube 2_A

text: Genomic DNA

text: E. coli C227-11 Genomic DNA sample C227-11_Tube 2_A


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

text: live

text: Generic

text: Methanofollis liminatans DSM 4140

text: Methanofollis liminatans DSM 4140

characteristic: sample number

text: DSM 4140

text: Generic sample from Methanofollis liminatans DSM 4140


name: The hexyzhiazox susceptible citrus red mite

text: Southwest university, China

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Panonychus citri

text: Illumina sequencing of the transcriptome of Panonychus citri


Mengenilla moldryzki EST reads

text: Zentrum für Molekulare Biodiversitätsforschung, Zoologisches Forschungsmuseum Alexander Koenig

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Single EST reads (454) linked to the transcriptome project BioProject ID PRJNA72711 and the genome project BioProject ID PRJNA72521.

text: Mengenilla

text: The first sequenced genome of a twisted-winged parasite (Strepsiptera) and its phylogenetic implications


text: Molecular Biology, NCMLS Radboud University Nijmegen

text: live

text: Generic

characteristic: NCBI submission model

text: Antibody H3K9me3 gift from Thomas Jenuwein; similar to H3K9me3 antibody Upstate/ Millipore 07-442 (lot 4861)

characteristic: antibody/details

text: Embryonic Stem cells

characteristic: cell type

text: Mus musculus

text: Chromatin IP against H3K9me3

characteristic: source

text: Embryonic Stem cells

text: Agouti C57BL/6N substrain

characteristic: treatment group


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Antibody H3K9me3 (Abcam 8898, 58206)

text: Embryonic Stem cells

text: Mus musculus

characteristic: organism

text: Chromatin IP against H3K9me3

text: Embryonic Stem cells

text: Agouti C57BL/6N substrain

characteristic: strain

characteristic: title


characteristic: External Id

text: live

text: Generic

text: Antibody H3K9me3 (Abcam 8898, 638466)

text: Embryonic Stem cells

text: Mus musculus

text: Chromatin IP against H3K9me3

text: Embryonic Stem cells

text: Agouti C57BL/6N substrain


text: Hubrecht Institute

characteristic: INSDC center name

text: live

text: Generic

text: Young adult C. elegans

characteristic: developmental stage

text: Caenorhabditis elegans

text: untreated

characteristic: rna treatment

text: Young adult C. elegans

text: Bristol N2 background

text: WT


text: Hubrecht Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Young adult C. elegans

text: Caenorhabditis elegans

text: oxidised

text: Young adult C. elegans

text: Bristol N2 background

text: WT ox


text: Hubrecht Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Young adult C. elegans

text: Caenorhabditis elegans

text: TAP treated

text: Young adult C. elegans

text: Bristol N2 background

text: WT TAP


text: Hubrecht Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Young adult C. elegans

text: Caenorhabditis elegans

text: untreated

text: Young adult C. elegans

text: Bristol N2 background


text: Hubrecht Institute

text: live

text: Generic

text: Young adult C. elegans

text: Caenorhabditis elegans

text: oxidised

text: Young adult C. elegans

text: Bristol N2 background

text: rem-1(pk2452) ox


text: Hubrecht Institute

text: live

text: Generic

text: Young adult C. elegans

text: Caenorhabditis elegans

text: oxidised

text: Young adult C. elegans

text: Bristol N2 background

text: rem-1(pk2295) ox


text: Hubrecht Institute

text: live

text: Generic

text: Young adult C. elegans

text: Caenorhabditis elegans

text: TAP treated

text: Young adult C. elegans

text: Bristol N2 background

text: rem-1(pk2295) TAP


text: Experimental Oncology, European Institute of Oncology

text: live

text: Generic

text: BirA-ES cells

characteristic: cell type

text: streptavidin

characteristic: chip method

text: Mus musculus


text: Boston University

text: live

text: Generic

text: Schneider 2 (S2) cells

characteristic: fragment length

text: transfected with dsRNA targeting nibbler

characteristic: genotype/variation

text: Drosophila melanogaster

text: unoxidized

characteristic: oxidation


text: Boston University

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Schneider 2 (S2) cells

text: transfected with dsRNA targeting luciferase

text: Drosophila melanogaster

characteristic: organism

text: oxidized


characteristic: External Id

text: Boston University

text: live

text: Generic

text: Schneider 2 (S2) cells

text: Drosophila melanogaster

text: oxidized

characteristic: title


text: Boston University

characteristic: INSDC center name

text: live

text: Generic

text: Schneider 2 (S2) cells

text: Drosophila melanogaster

text: unoxidized


text: Boston University

text: live

text: Generic

text: embryonic stem (ES) cells

characteristic: chip antibody

text: WT

text: Mus musculus

text: Mbd3 ChIP

text: Mbd3 rep1 ChIP


text: Boston University

characteristic: INSDC first public

text: live

text: Generic

text: embryonic stem (ES) cells

text: WT

text: Mus musculus

text: Mbd3 ChIP

text: Mbd3 rep2 ChIP


text: Boston University

characteristic: INSDC last update

text: live

text: Generic

text: embryonic stem (ES) cells

text: Tet1 KD

text: Mus musculus

text: Tet1 KD-Mbd3 ChIP

text: Tet1 KD-Mbd3 ChIP


text: Boston University

characteristic: INSDC secondary accession

text: live

text: Generic

text: embryonic stem (ES) cells

text: Brg1 KD

text: Mus musculus

text: Brg1 KD-Mbd3 ChIP

text: Brg1 KD-Mbd3 ChIP


text: Boston University

text: live

characteristic: INSDC status

text: Generic

text: embryonic stem (ES) cells

text: PolII

text: EGFP KD

text: Mus musculus

text: EGFP KD-RNA Polymerase II ChIP

text: EGFP KD-RNA Polymerase II ChIP


text: Boston University

text: live

text: Generic

characteristic: NCBI submission model

text: embryonic stem (ES) cells

text: PolII

text: Mbd3 KD

text: Mus musculus

text: Mbd3 KD-RNA Polymerase II ChIP

text: Mbd3 KD-RNA Polymerase II ChIP


text: Boston University

text: live

text: Generic

text: embryonic stem (ES) cells

characteristic: cell type

text: PolII

text: Brg1 KD

text: Mus musculus

text: Brg1 KD-RNA Polymerase II ChIP

text: Brg1 KD-RNA Polymerase II ChIP


text: Department of Molecular Biology and Genetics, Cornell University

text: live

text: Generic

text: 5-7 days post eclosion

characteristic: age

text: Adult

characteristic: developmental stage

text: Drosophila willistoni

text: female

characteristic: sex

text: Head

characteristic: strain

text: Head

characteristic: tissue

text: D. willistoni female head rep1


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: 5-7 days post eclosion

text: Adult

text: Drosophila willistoni

text: male

text: Head

text: Head

text: D. willistoni male head rep1


characteristic: External Id

text: live

text: Generic

text: 5-7 days post eclosion

text: Adult

text: Drosophila willistoni

characteristic: organism

text: female

text: Head

text: Head

text: D. willistoni female head rep2


characteristic: INSDC center name

text: live

text: Generic

text: 5-7 days post eclosion

text: Adult

text: Drosophila willistoni

text: male

text: Head

text: Head

text: D. willistoni male head rep2

characteristic: title


characteristic: INSDC first public

text: live

text: Generic

text: 5-7 days post eclosion

text: Adult

text: Drosophila willistoni

text: female

text: Thorax

text: Thorax

text: D. willistoni female thorax rep1


characteristic: INSDC last update

text: live

text: Generic

text: 5-7 days post eclosion

text: Adult

text: Drosophila willistoni

text: male

text: Thorax

text: Thorax

text: D. willistoni male thorax rep1


characteristic: INSDC secondary accession

text: live

text: Generic

text: 5-7 days post eclosion

text: Adult

text: Drosophila willistoni

text: female

text: Abdomen

text: Abdomen

text: D. willistoni female abdomen rep1


text: live

characteristic: INSDC status

text: Generic

text: 5-7 days post eclosion

text: Adult

text: Drosophila willistoni

text: male

text: Abdomen

text: Abdomen

text: D. willistoni male abdomen rep1


beard

text: Bigelow Laboratory for Ocean Sciences

text: live

text: Generic

characteristic: NCBI submission model

text: uncultured bacterium

text: Sample from the beard of the Marselisborg iron-seep


bowl

text: Bigelow Laboratory for Ocean Sciences

text: live

text: Generic

text: uncultured bacterium

text: sample from the bowl of the Marselisborg iron-seep


text: Bigelow Laboratory for Ocean Sciences

text: live

text: Generic

text: uncultured bacterium

text: Sample from Lakeside Drive taken on 4/22/2010


text: Bigelow Laboratory for Ocean Sciences

text: live

text: Generic

text: uncultured bacterium

text: Sample from Lakeside Drive taken on 5/14/2010


text: Bigelow Laboratory for Ocean Sciences

text: live

text: Generic

text: uncultured bacterium

text: Sample from Lakeside Drive taken on 5/23/2010


text: Bigelow Laboratory for Ocean Sciences

text: live

text: Generic

text: uncultured bacterium

text: Sample from Lakeside Drive taken on 6/01/2010


text: Bigelow Laboratory for Ocean Sciences

text: live

text: Generic

text: uncultured bacterium

text: Sample from Lakeside Drive taken on 6/04/2010


text: Bigelow Laboratory for Ocean Sciences

text: live

text: Generic

text: uncultured bacterium

text: Sample from Lakeside Drive taken on 5/21/2010


text: Bigelow Laboratory for Ocean Sciences

text: live

text: Generic

text: uncultured bacterium

text: Sample from Lakeside Drive taken on 7/02/2010


text: Bigelow Laboratory for Ocean Sciences

text: live

text: Generic

text: uncultured bacterium

text: Sample from Lakeside Drive taken on 9/30/2010


text: Bigelow Laboratory for Ocean Sciences

text: live

text: Generic

text: uncultured bacterium

text: Sample taken from a Fe-seep out Maine Route 215


text: ENCODE DCC

text: live

text: Generic

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: Osteosarcoma from the tibia of a 15 year old human female, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972. (PMID: 6081590)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

characteristic: lab description

text: Homo sapiens

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: PBMC cells provided by E. Bresnick, UW Madison

text: PBMC

text: Peripheral blood mononuclear cells

text: mesoderm

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: ChIP-Seq

text: USC

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description

text: PBMC

characteristic: title