name: 1132879266431 Leptospira wolffii serovar undetermined str. Khorat-H2T LS454061-PE-ILI62-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira wolffii serovar undetermined str. Khorat-H2T

text: Leptospira wolffii serovar Khorat str. Khorat-H2

text: Generic sample from Leptospira wolffii str. Khorat-H2


name: 1132879266433 Leptospira kirschneri serovar undetermined str. H1 LS454081-PE-ILI37-2 Sample

status: PUBLIC

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Total DNA isolated from Leptospira kirschneri serovar undetermined str. H1

characteristic: description

text: Leptospira kirschneri str. H1

characteristic: organism

tag: attribute

characteristic: strain

text: Generic sample from Leptospira kirschneri str. H1

characteristic: title


name: 1132879266437 Leptospira interrogans serovar Medanensis str. L0448 LS454084-PE-ILI39-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Medanensis str. L0448

text: Generic sample from Leptospira interrogans serovar Medanensis str. L0448


name: 1132879266435 Leptospira kirschneri serovar undetermined str. H2 LS454082-PE-ILI63-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira kirschneri serovar undetermined str. H2

text: Leptospira kirschneri str. H2

text: Generic sample from Leptospira kirschneri str. H2


name: 1132879266439 Leptospira interrogans serovar undetermined str. L0996 LS454085-PE-ILI40-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. L0996

text: Leptospira interrogans str. L0996

text: Generic sample from Leptospira interrogans str. L0996


name: 1132879266443 Leptospira interrogans serovar Bataviae str. L1111 LS454087-PE-ILI42-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Bataviae str. L1111

text: Generic sample from Leptospira interrogans serovar Bataviae str. L1111


name: 1132879266441 Leptospira weilii serovar undetermined str. LNT 1234 LS454086-PE-ILI41-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira weilii serovar undetermined str. LNT 1234

text: Leptospira weilii str. LNT 1234

text: LNT 1234

text: Generic sample from Leptospira weilii str. LNT 1234


text: Pierre Ferrier, Case 906, CIML

text: live

text: Generic

text: Raji

characteristic: cell line

text: Homo sapiens

text: N.D.

characteristic: passages

text: Human Raji WT

text: Burkitt's lymphoma

characteristic: tissue

text: Phenantroline Raji WT

text: 0.4mM 10,1- phenantroline

characteristic: treatment


name: 1132879266445 Leptospira interrogans serovar undetermined str. L1207 LS454088-PE-IL99-2 Sample

characteristic: External Id

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. L1207

text: Leptospira interrogans str. L1207

text: Generic sample from Leptospira interrogans str. L1207


name: 1132879266447 Leptospira interrogans serovar Autumnalis str. LP101 LS454089-PE-ILI44-2 Sample

text: J. Craig Venter Institute

characteristic: INSDC center name

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Autumnalis str. LP101

text: Generic sample from Leptospira interrogans serovar Autumnalis str. LP101


name: 1132879266449 Leptospira borgpetersenii serovar Javanica str. MK146 LS454090-PE-ILI45-2 Sample

text: J. Craig Venter Institute

characteristic: INSDC first public

text: live

text: Generic

text: Total DNA isolated from Leptospira borgpetersenii serovar Javanica str. MK146

text: Generic sample from Leptospira borgpetersenii serovar Javanica str. MK146


name: 1132879266453 Leptospira interrogans serovar Hebdomadis str. R499 LS454096-PE-ILI47-2 Sample

text: J. Craig Venter Institute

characteristic: INSDC last update

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Hebdomadis str. R499

text: Generic sample from Leptospira interrogans serovar Hebdomadis str. R499


name: 1132879266451 Leptospira interrogans serovar Pyrogenes str. R168 LS454092-PE-ILI46-2 Sample

text: J. Craig Venter Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Pyrogenes str. R168

text: Generic sample from Leptospira interrogans serovar Pyrogenes str. R168


name: 1132879266455 Leptospira interrogans serovar Grippotyphosa str. UI 08368 LS454097-PE-IL93-2 Sample

text: J. Craig Venter Institute

text: live

characteristic: INSDC status

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Grippotyphosa str. UI 08368

text: UI 08368

text: Generic sample from Leptospira interrogans serovar Grippotyphosa str. UI 08368


name: 1132879266457 Leptospira interrogans serovar Grippotyphosa str. UI 08434 LS454098-PE-ILI25-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Total DNA isolated from Leptospira interrogans serovar Grippotyphosa str. UI 08434

text: UI 08434

text: Generic sample from Leptospira interrogans serovar Grippotyphosa str. UI 08434


name: 1132879266459 Leptospira interrogans serovar undetermined str. UI 08452 LS454099-PE-ILI26-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. UI 08452

text: Leptospira interrogans str. UI 08452

text: UI 08452

text: Generic sample from Leptospira interrogans str. UI 08452


name: 1132879266461 Leptospira interrogans serovar Bataviae str. UI 08561 LS454100-PE-ILI27-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

characteristic: SRA accession

text: Total DNA isolated from Leptospira interrogans serovar Bataviae str. UI 08561

text: UI 08561

text: Generic sample from Leptospira interrogans serovar Bataviae str. UI 08561


name: 1132879266463 Leptospira borgpetersenii serovar undetermined str. UI 09149 LS454101-PE-ILI64-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira borgpetersenii serovar undetermined str. UI 09149

characteristic: description

text: Leptospira borgpetersenii str. UI 09149

text: UI 09149

text: Generic sample from Leptospira borgpetersenii str. UI 09149


name: 1132879266465 Leptospira interrogans serovar undetermined str. UI 09600 Serogroup Canicola LS454102-PE-ILI66-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. UI 09600 Serogroup Canicola

text: Leptospira interrogans str. UI 09600

characteristic: organism

text: UI 09600

text: Generic sample from Leptospira interrogans str. UI 09600


name: 1132879266467 Leptospira borgpetersenii serovar Javanica str. UI 09931 LS454103-PE-ILI67-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira borgpetersenii serovar Javanica str. UI 09931

text: UI 09931

characteristic: strain

text: Generic sample from Leptospira borgpetersenii serovar Javanica str. UI 09931


name: 1132879266469 Leptospira interrogans serovar undetermined str. UI 12621 LS454104-PE-IL95-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. UI 12621

text: Leptospira interrogans str. UI 12621

text: UI 12621

text: Generic sample from Leptospira interrogans str. UI 12621

characteristic: title


name: 1132879266471 Leptospira interrogans serovar undetermined str. UI 12758 LS454105-PE-ILI28-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. UI 12758

text: Leptospira interrogans str. UI 12758

text: UI 12758

text: Generic sample from Leptospira interrogans str. UI 12758


name: 1132879266475 Leptospira interrogans serovar Grippotyphosa str. UI 12769 LS454107-PE-IL98-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Grippotyphosa str. UI 12769

text: UI 12769

text: Generic sample from Leptospira interrogans serovar Grippotyphosa str. UI 12769


name: 1132879266473 Leptospira interrogans serovar Grippotyphosa str. UI 12764 LS454106-PE-ILI29-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Grippotyphosa str. UI 12764

text: UI 12764

text: Generic sample from Leptospira interrogans serovar Grippotyphosa str. UI 12764


name: 1132879266479 Leptospira interrogans serovar undetermined str. UI 13372 LS454109-PE-ILI32-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. UI 13372

text: Leptospira interrogans str. UI 13372

text: UI 13372

text: Generic sample from Leptospira interrogans str. UI 13372


name: 1132879266477 Leptospira weilii serovar undetermined str. UI 13098 LS454108-PE-ILI31-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira weilii serovar undetermined str. UI 13098

text: Leptospira weilii str. UI 13098

text: UI 13098

text: Generic sample from Leptospira weilii str. UI 13098


name: 1132879266481 Leptospira interrogans serovar Pomona str. UT364 LS454112-PE-ILI35-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Pomona str. UT364

text: Generic sample from Leptospira interrogans serovar Pomona str. UT364


name: 1132879266483 Leptospira santarosai serovar undetermined str. 200702252 Serogroup Mini LS454120-PE-ILI68-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira santarosai serovar undetermined str. 200702252 Serogroup Mini

text: Leptospira santarosai str. 200702252

text: Generic sample from Leptospira santarosai str. 200702252


name: 1132879266485 Leptospira kirschneri serovar Valbuzzi str. 200702274 LS454122-PE-ILI70-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira kirschneri serovar Valbuzzi str. 200702274

text: Generic sample from Leptospira kirschneri serovar Valbuzzi str. 200702274


name: 1132879266489 Leptospira interrogans serovar Australis str. LT2080 LS454142-PE-ILI36-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Australis str. LT2080

text: Generic sample from Leptospira interrogans serovar Australis str. LT2148


name: 1132879266487 Leptospira borgpetersenii serovar undetermined str. 200801926 Serogroup Mini LS454128-PE-ILI72-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira borgpetersenii serovar undetermined str. 200801926 Serogroup Mini

text: Generic sample from Leptospira borgpetersenii str. 200801926


name: 1133001704027 Leptospira santarosai serovar undetermined str. HAI1349 LS454169-PE-ILI42-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira santarosai serovar undetermined str. HAI1349

text: Leptospira santarosai str. HAI1349

text: Generic sample from Leptospira santarosai str. HAI1349


text: Universite de Poitiers

text: live

text: Generic

text: Normalized library (prepared by Evrogen, Moscow, Russia) prepared from an equimolar proportion of asymbiotic and symbiotic ovaries, and 6h, 9h and 15h-challenged asymbiotic females (S. typhimurium). cDNA were synthetised from total RNA sample using SMART approach. Normalisation was done by DSN (dublex-specific nuclease) method. After PCR amplification of normalized fraction, cDNA were purified using QIAquick (QIAGEN, Alameda), digested by SfiI enzyme and ligated into pAL 17.3 (Evrogen) for E. coli transformation. Around 15000 clones were sequenced by SANGER method (Genoscope, Evry, FRANCE), starting by the 5' end.

text: Armadillidium vulgare

text: ovary

characteristic: tissue-type

text: Armadillidium vulgare normalized library


text: Universite de Poitiers

text: live

text: Generic

text: Non-normalized library. cDNA were synthesised from total RNA sample of symbiotic ovaries using creator SMART cDNA Library Construction kit (Clontech/BD biosciences, PaloAlto, CA). cDNA were digested by SfiI enzyme and ligated into pDNRlib for E. coli transformation. Around 4500 clones were sequenced by SANGER method (Genoscope, Evry, FRANCE), starting by the 5' end.

text: Armadillidium vulgare

text: ovary

text: Armadillidium vulgare symbiotic ovary non-normalized library


text: Universite de Poitiers

text: live

text: Generic

text: Non-normalized library. cDNA were synthesised from total RNA sample of asymbiotic ovaries using creator SMART cDNA Library Construction kit (Clontech/BD biosciences, PaloAlto, CA). cDNA were digested by SfiI enzyme and ligated into pDNRlib for E. coli transformation. Around 5500 clones were sequenced by SANGER method (Genoscope, Evry, FRANCE), starting by the 5' end.

text: Armadillidium vulgare

text: ovary

text: Armadillidium vulgare asymbiotic ovary non-normalized library


text: Universite de Poitiers

text: live

text: Generic

text: SSH library (symbiotic vs asymbiotic). Amplified ds cDNA were prepared using SMART approach and digested by RsaI. Subtractive Hybridization was perfomed by Evrogen (Moscow, Russia). A MOS procedure was applied and purified cDNA were cloned into the pAL16 vector (Evrogen). Around 700 clones were sequenced by SANGER method (Genoscope, Evry, FRANCE), starting by the 5' end.

text: Armadillidium vulgare

text: Armadillidium vulgare SSH library (symbiotic vs. asymbiotic)


text: Universite de Poitiers

text: live

text: Generic

text: SSH library (asymbiotic vs symbiotic). Amplified ds cDNA were prepared using SMART approach and digested by RsaI. Subtractive Hybridization was perfomed by Evrogen (Moscow, Russia). A MOS procedure was applied and purified cDNA were cloned into the pAL16 vector (Evrogen). Around 700 clones were sequenced by SANGER method (Genoscope, Evry, FRANCE), starting by the 5' end.

text: Armadillidium vulgare

text: Armadillidium vulgare SSH library (asymbiotic vs. symbiotic)


text: Universite de Poitiers

text: live

text: Generic

text: SSH library (adults challenged by S. typhimurium vs not challenged adults). Amplified ds cDNA were prepared using SMART approach and digested by RsaI. Subtractive Hybridization was perfomed by Evrogen (Moscow, Russia). A MOS procedure was applied and purified cDNA were cloned into the pAL16 vector (Evrogen). Around 700 clones were sequenced by SANGER method (Genoscope, Evry, FRANCE), starting by the 5' end.

text: adult

characteristic: dev-stage

text: Armadillidium vulgare

text: Armadillidium vulgare SSH library (adults challenged by S. typhimurium vs. not challenged)


text: Universite de Poitiers

text: live

text: Generic

text: SSH library (not challenged adults vs challenged adults by S. typhimurium). Amplified ds cDNA were prepared using SMART approach and digested by RsaI. Subtractive Hybridization was perfomed by Evrogen (Moscow, Russia). A MOS procedure was applied and purified cDNA were cloned into the pAL16 vector (Evrogen). Around 700 clones were sequenced by SANGER method (Genoscope, Evry, FRANCE), starting by the 5' end.

text: adult

text: Armadillidium vulgare

text: Armadillidium vulgare SSH library (adults not challenged vs. challenged by S. typhimurium)


Bint NGS

text: University of New England

text: live

text: Generic

text: Banksia integrifolia

text: Banksia integrifolia NGS


text: Stanford University

text: live

text: Generic

text: Fungal ITS1 amplicons from surface sterilized sun leaves of Metrosideros polymorpha on the Mauna Loa environmental Matrix on the Big Island of Hawaii

text: uncultured fungus


Birchwood

text: Northeast Forestry University

text: live

text: Generic

text: normal wood(run SRR520272)

text: Betula platyphylla

text: Genes of NW.


chickpea genome sequence(454 data)

text: National Institute of Plant Genome Research

text: live

text: Generic

text: 454/Roche Gs FLX Titanum pyrosequencing platform was used to sequence Four Whole genome shotgun libraries and six matepair libraries (3-20 kb insert sizes) in 17 runs to produce 61 Gb sequence data of average 400-base read lengths.

text: Cicer arietinum

text: Whole genome sequencing project of chickpea


text: Bharathidasan University

text: live

text: Generic

text: uncultured bacterium 1404-27

text: NORMAL SOIL CONTROL (WITHOUT CROP)


text: Swedish Defence Research Agency

text: live

text: Generic

text: Francisella tularensis subsp. holarctica FSC162 Genome sequencing


ICPA 2039

text: International Crops Research Institute for the Semi-Arid Tropics

text: live

text: Generic

text: Cajanus cajan

text: Pigeonpea Mitochondrial Genome ICPA 2039


ICPB 2039

text: live

text: Generic

text: Cajanus cajan

text: Pigeonpea Mitochondrial Genome ICPB 2039


ICPH 2433

text: live

text: Generic

text: Cajanus cajan

text: Pigeonpea Mitochondrial Genome ICPH 2433


ICPW 29

text: live

text: Generic

text: Cajanus cajan

text: Pigeonpea Mitochondrial Genome ICPW 29


text: Ohio State University

text: live

text: Generic

characteristic: cell-line

text: H3K4me1 (CellSignalingTechnologies, 9723S, lot#1)

characteristic: chip antibody

text: Homo sapiens

characteristic: passage

text: Human breast adenocarcinoma cell-line MCF7


characteristic: External Id

text: Ohio State University

characteristic: INSDC center name

text: live

text: Generic

text: H3K27ac (Abcam, ab4729, lot#GR6802-1)

text: Homo sapiens


text: Ohio State University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: H3K27me3 (CellSignalingTechnologies, 9733S, lot#5)

text: Homo sapiens


text: Ohio State University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: H3K9me3 (CellSignalingTechnologies, 9754S, lot#1)

text: Homo sapiens


text: Ohio State University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Homo sapiens

text: Human colorectal cancer cell-line HCT116


text: Ohio State University

text: live

text: Generic

characteristic: SRA accession

text: H3K27ac (Abcam, ab4729, lot#GR6802-1)

text: Homo sapiens


text: Institut Pasteur - Christophe Antoniewski

text: live

text: Generic

text: Ovaries hand-dissected from D. melanogaster heterozygous females having inherited T-1 maternally. Sample #1

characteristic: description

text: Drosophila melanogaster

characteristic: organism

text: #1 Ovaries from T-1/ females


text: live

text: Generic

text: Ovaries hand-dissected from heterozygous females having paternally inherited T-1. Sample #2

text: Drosophila melanogaster

text: #2 Ovaries from /T1 females

characteristic: title


P-1152 hetero

text: live

text: Generic

text: Ovaries hand-dissected from heterozygous females having inherited P-1152 maternally. Sample #3

text: Drosophila melanogaster

text: #3 Ovaries from P-1152/ females


text: live

text: Generic

text: Ovaries hand-dissected from heterozygous females having inherited BX2 maternally. sample #4

text: Drosophila melanogaster

text: #4 Ovaries from BX2/CyO females


text: live

text: Generic

text: Ovaries hand-dissected from homozygous P-1152 females. Sample #5

text: Drosophila melanogaster

text: #5 Ovaries from P-1152/P-1152 females


BX2* G2

text: live

text: Generic

text: Ovaries hand-dissected from heterozygous BX2* G2 females. Sample #6

text: Drosophila melanogaster

text: #6 Ovaries from heterozygous BX2* G2 females


BX2* G42

text: live

text: Generic

text: Ovaries hand-dissected from heterozygous BX2* G42 females. Sample #7

text: Drosophila melanogaster

text: #7 Ovaries from heterozygous BX2* G42 females


BX2*2 G36

text: live

text: Generic

text: Ovaries hand-dissected from heterozygous BX2*2 G36 females. Sample #8

text: Drosophila melanogaster

text: #8 Ovaries from heterozygous BX2*2 G36 females


text: Paediatrics, Addenbrookes Hospital

text: live

text: Generic

text: proximal caput epididymus

characteristic: cell type

text: FLAG

text: Mus musculus

text: passage 20-25

characteristic: passages

text: proliferating, non-tagged WT AR

characteristic: strain

text: PC1 33C


text: Paediatrics, Addenbrookes Hospital

text: live

text: Generic

text: proximal caput epididymus

text: FLAG

characteristic: chip antibody

text: Mus musculus

text: passage 20-25

text: proliferating, tagged WT AR

text: P17 33C


text: Paediatrics, Addenbrookes Hospital

text: live

text: Generic

text: proximal caput epididymus

text: FLAG

text: Mus musculus

text: passage 20-25

text: non-proliferating, tagged WT-AR

text: P17 37C


text: German Center for Cancer Research

text: live

text: Generic

text: Control

characteristic: genotype/variation

text: Mus musculus

text: healthy lung tissue

text: Healthy lung tissue


characteristic: External Id

text: German Center for Cancer Research

text: live

text: Generic

text: KOB

text: Mus musculus

text: lung tumors

text: Big lung tumor tissue with Dnmt3a knocked out


text: German Center for Cancer Research

characteristic: INSDC center name

text: live

text: Generic

text: KOS

text: Mus musculus

text: lung tumors

text: Small lung tumor tissue with Dnmt3a knocked out


text: German Center for Cancer Research

characteristic: INSDC first public

text: live

text: Generic

text: WTB

text: Mus musculus

text: lung tumors

text: Big lung tumor tissue with Dnmt3a intact


text: German Center for Cancer Research

characteristic: INSDC last update

text: live

text: Generic

text: WTS

text: Mus musculus

text: lung tumors

text: Small lung tumor tissue with Dnmt3a intact


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Mitch Weiss lab

characteristic: biomaterial provider

characteristic: cell

text: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: Input

characteristic: control

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: Strain 129, has widely available embryonic stem cells

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: Mitch Weiss lab

text: mouse

text: M

text: Input

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

characteristic: strain

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Input

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: Input

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: Derived by inbreeding from selected F2 progeny of B10.A X B10.129

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K27me3

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Mitch Weiss lab

text: Megakaryo

text: Megakaryocyte

text: mouse

text: B

text: No special treatment or protocol applies

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

text: Megakaryo

text: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Embryonic day 14.5

text: Millipore

text: Mitch Weiss lab

characteristic: biomaterial provider

text: Erythrobl

characteristic: cell

text: Erythroblast, ter119+ cells from liver

characteristic: cell description

text: mouse

characteristic: cell organism

text: B

characteristic: cell sex

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: Erythrobl

characteristic: strain

characteristic: strain description

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me1

characteristic: antibody antibodydescription

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Mitch Weiss lab

text: Megakaryo

text: Megakaryocyte

text: mouse

text: B

text: Input

characteristic: control

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

text: Megakaryo


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Embryonic day 0 (stem cell)

text: rabbit polyclonal. Antibody Target: H3K36me3

text: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.

text: Abcam

text: Mitch Weiss lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

characteristic: cell organism

text: B

characteristic: cell sex

text: Input

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

characteristic: strain

characteristic: strain description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Mitch Weiss lab

text: Megakaryo

text: Megakaryocyte

text: mouse

text: B

text: Input

characteristic: control

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

text: Megakaryo


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Millipore

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: Input

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

characteristic: strain

characteristic: strain description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Mitch Weiss lab

text: Gata1- erythroid progenitor

text: mouse

text: M

text: Input

characteristic: control

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Abcam

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: Input

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

characteristic: strain

characteristic: strain description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Mitch Weiss lab

text: Gata1- erythroid progenitor

text: mouse

text: M

text: Input

characteristic: control

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Millipore

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: Input

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

characteristic: strain

characteristic: strain description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Mitch Weiss lab

text: Gata1- erythroid progenitor

text: mouse

text: M

text: Input

characteristic: control

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Embryonic day 0 (stem cell)

text: Abcam

text: Mitch Weiss lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

characteristic: strain

characteristic: strain description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Mitch Weiss lab

text: Gata1- erythroid progenitor

text: mouse

text: M

text: Input

characteristic: control

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Embryonic day 14.5

text: Abcam

text: Mitch Weiss lab

characteristic: biomaterial provider

text: Erythrobl

characteristic: cell

text: Erythroblast, ter119+ cells from liver

characteristic: cell description

text: mouse

characteristic: cell organism

text: B

characteristic: cell sex

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: Erythrobl

characteristic: strain

characteristic: strain description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Mitch Weiss lab

text: mouse

text: M

text: Input

characteristic: control

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Embryonic day 0 (stem cell)

text: Input

characteristic: antibody description

text: Mitch Weiss lab

characteristic: biomaterial provider

characteristic: cell

text: Gata1- erythroid progenitor

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: Input

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

characteristic: strain

characteristic: strain description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

text: Input

characteristic: antibody

text: Mitch Weiss lab

text: Megakaryo

text: Megakaryocyte

text: mouse

text: B

text: Input

characteristic: control

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

text: Megakaryo


text: ENCODE DCC

text: live

text: Generic

text: Embryonic day 14.5

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Mitch Weiss lab

characteristic: biomaterial provider

text: Megakaryo

characteristic: cell

text: Megakaryocyte

characteristic: cell description

text: mouse

characteristic: cell organism

text: B

characteristic: cell sex

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: Megakaryo

characteristic: strain


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

characteristic: antibody

text: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

text: Abcam

text: Mitch Weiss lab

text: Megakaryo

text: Megakaryocyte

text: mouse

text: B

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

text: Megakaryo

characteristic: strain description

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Embryonic day 0 (stem cell)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Mitch Weiss lab

characteristic: biomaterial provider

characteristic: cell

text: Gata1- erythroid progenitor

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

characteristic: strain


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

text: Abcam

text: Mitch Weiss lab

text: Erythrobl

text: Erythroblast, ter119+ cells from liver

text: mouse

text: B

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

text: Erythrobl

characteristic: strain description

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Embryonic day 14.5

text: Input

characteristic: antibody description

text: Mitch Weiss lab

characteristic: biomaterial provider

text: Erythrobl

characteristic: cell

text: Erythroblast, ter119+ cells from liver

characteristic: cell description

text: mouse

characteristic: cell organism

text: B

characteristic: cell sex

text: Input

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: Erythrobl

characteristic: strain


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Mitch Weiss lab

text: mouse

text: M

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Abcam

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: Input

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Mitch Weiss lab

text: Erythrobl

text: Erythroblast, ter119+ cells from liver

text: mouse

text: B

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

text: Erythrobl

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Abcam

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

characteristic: strain

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Mitch Weiss lab

text: Erythrobl

text: Erythroblast, ter119+ cells from liver

text: mouse

text: B

text: ChipSeq

text: Chromatin IP Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

text: Erythrobl

characteristic: strain description


Microbiota in Feces of chicken

characteristic: External Id

text: Shanghai Jiao Tong University School of Medicine

characteristic: INSDC center name

text: live

text: Generic

text: The 8 chicken recruit from a small farm house in Licheng town, Li Yan city , JIANG SU province, China, there are total 8 chicken raised in the farm house. The chicken were uptaked with cetotetrine hydrochloride one time through adding into water 13 days ago before sampling because they were ill, the age of chicken is 37 days, the average weight of the chicken is 125 g, the diets of chicken are rice with skin, green vegetable Chinese cabbage and corn-meal-mush. The 10 chicken we enrolled from a big poultry farm ( they have 10,000 chicken) in Nandu town, Li Yan city, JIANG SU province, the chicken’s age is 35 days, average weight of chicken is 7450 g. on the age of 10th day , the chicken were inoculated with Newcastle disease attenuated vaccine by adding into water, on the age of 15th day , they were inoculated with influenza vaccine, before sampling, they were using penicillin in past month, 1-2U/kg adding into water, extends over 3 days; and using amplidox extends over 5 days by add into feed (feed/amplidox=200 g/g), the feed were fed bought from Nantong CHIA TAI Co.,LTD.

characteristic: description

text: chicken gut metagenome

text: The microbiota of farm house chicken’ feces is more diverse than that in poultry-farm and the aerobic cultivatable tetracycline resistant bacteria per contra

characteristic: title


root of Solanum torvum

text: Wenzhou Medical college

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: The seeds of Solanum torvum (St) were sown under sterile conditions in Petri dishes that contained MS medium and were solidified with 0.8% (w/v) agar. Seven-day-old seedlings were transferred into Hoagland solution and were grown in a sterilized, pathogen-free greenhouse. The cultures were maintained at 22-25*C under a 16-h photoperiod. The treatment with CdCl2 was applied to four-week-old seedlings that were grown in Hoagland solution for 24 h. The culture solution was replaced every 3 days. ck, untreated control roots. tr, 50 *M CdCl2 treatment for 24 h.

text: Solanum torvum

text: root of Solanum torvum


root of Solanum nigrum

text: Wenzhou Medical college

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: The seeds of Solanum nigrum (Sn) were sown under sterile conditions in Petri dishes that contained MS medium and were solidified with 0.8% (w/v) agar. Seven-day-old seedlings were transferred into Hoagland solution and were grown in a sterilized, pathogen-free greenhouse. The cultures were maintained at 22-25*C under a 16-h photoperiod. The treatment with 50 *M CdCl2 was applied to four-week-old seedlings that were grown in Hoagland solution for 24 h. The culture solution was replaced every 3 days. ck, untreated control roots. tr, 50 *M CdCl2 treatment for 24 h.

text: Solanum nigrum

text: root of Solanum nigrum


treated root of Solanum torvum

text: Wenzhou Medical college

text: live

text: Generic

text: Solanum torvum

text: treated root of Solanum torvum


treated root of Solanum nigrum

text: Wenzhou Medical college

text: live

text: Generic

text: Solanum nigrum

text: treated root of Solanum nigrum


10h spores

text: The University of Texas at Austin

text: live

text: Generic

text: Surface-sterilized, 7d-dark-soaked spores were embedded in 0.5 strength, pH 6.0 MS, 05.% agar medium in 100 x 15mm plastic petri dishes. 10h after light exposure, spores were frozen at -80 degrees Celsius to be processed for RNA isolation. RNA samples were pooled and ca. 29 *g were delivered for cDNA synthesis at the Purdue University Genomics Core Facility for use in 454 sequencing.

text: Ceratopteris richardii

text: cDNA from 10h germinating Ceratopteris richardii spores


HK

text: Genome Research Foundation

text: live

text: Generic

text: HK

characteristic: cultivar

text: Glycine max

text: Novel comparative genomics of cultivated soybeans cultivar HK


DP

text: Genome Research Foundation

text: live

text: Generic

text: DP

text: Glycine max

text: Novel comparative genomics of cultivated soybeans cultivar DP


SG

text: Genome Research Foundation

text: live

text: Generic

text: SG

text: Glycine max

text: Novel comparative genomics of cultivated soybeans cultivar SG


text: Genome Research Foundation

text: live

text: Generic

text: Glycine max

text: Novel comparative genomics of cultivated soybeans cultivar SPD2


BU

text: Genome Research Foundation

text: live

text: Generic

text: BU

text: Glycine max

text: Novel comparative genomics of cultivated soybeans cultivar BU


Candida albicans L26

text: Broad Institute

text: live

text: Generic

text: USA: Iowa

characteristic: geo loc name

text: a/a

characteristic: mating type

text: Candida albicans L26

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: Generic sample from Candida albicans


Candida albicans P94015

text: Broad Institute

text: live

text: Generic

text: USA: Utah

text: a/a

text: Candida albicans P94015

characteristic: organism

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans P37005

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: USA: Florida

text: a/a

text: Candida albicans P37005

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans P60002

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: USA: Arizona

text: a/a

text: Candida albicans P60002

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans 19F

text: Broad Institute

text: live

text: Generic

text: USA: Michigan

text: alpha/alpha

text: Candida albicans 19F

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans P78048

text: Broad Institute

text: live

text: Generic

text: Canada: Manitoba

text: alpha/alpha

text: Candida albicans P78048

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans P34048

text: Broad Institute

text: live

text: Generic

text: Turkey

text: alpha/alpha

text: Candida albicans P34048

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans P37037

text: Broad Institute

text: live

text: Generic

text: USA: Wisconsin

text: a/alpha

text: Candida albicans P37037

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans P75016

text: Broad Institute

text: live

text: Generic

text: Israel

text: a/alpha

text: Candida albicans P75016

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans P57055

text: Broad Institute

text: live

text: Generic

text: USA: Omaha, Nebraska

text: a/alpha

text: Candida albicans P57055

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans P75063

text: Broad Institute

text: live

text: Generic

text: France

text: a/alpha

text: Candida albicans P75063

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans P78042

text: Broad Institute

text: live

text: Generic

text: USA: Indianapolis

text: a/alpha

text: Candida albicans P78042

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans P76055

text: Broad Institute

text: live

text: Generic

text: USA: Iowa

text: a/alpha

text: Candida albicans P76055

text: Homo sapiens

text: Generic sample from Candida albicans


Candida albicans P76067

text: Broad Institute

text: live

text: Generic

text: Canada: Ontario

text: a/alpha

text: Candida albicans P76067

text: Homo sapiens

text: Generic sample from Candida albicans


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Permafrost metagenome ActiveLayerDay7

characteristic: description

text: terrestrial

characteristic: env biome

text: Alaska

text: permafrost

text: USA:Alaska

text: Alaskan Permafrost

characteristic: isolation source

text: 69.373 N -152.441 W

characteristic: lat lon

text: soil metagenome

characteristic: sample number

text: Permafrost metagenome ActiveLayerDay7 library


text: The Jackson Laboratory

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: A 200-ml culture of W303 yeast cells was grown at 30oC to an OD600 of 0.8, and half of the culture was mixed with 4NQO (5 *g/*l) while the other half remained untreated. After 2 h, cells were harvested and total RNA was extracted by the hot phenol method (Rio DC, Ares J, M., Hannon GJ, Nilsen TW: Purification of RNA From Natural Sources. In RNA: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Press; 2011, Chapter 2) and Phase-Lock gels (5Prime) according to the manufacturer’s manual. Precipitated RNA was dissolved in 10 mM Tris-HCl, 1 mM EDTA, pH 7.6 and stored at -80*C for further analysis. Total RNA (3 *g) was submitted to Helicos for DRS as described previously (Ozsolak F, Kapranov P, Foissac S, Kim SW, Fishilevich E, Monaghan AP, John B, Milos PM: Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation. Cell 2010, 143:1018-1029.)

text: Saccharomyces cerevisiae

text: Genotoxic stress induces targeted, genome-wide alternative polyadenylation in budding yeast

characteristic: title


text: Indiana University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Escherichia coli K-12

text: M2 wt1


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

characteristic: strain

text: M2 wt5


pool

text: USDA ARS

text: live

text: Generic

text: Barcoded pool of seven Paeonia and one Rheum.

text: Paeonia

characteristic: organism


characteristic: External Id

text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt7


text: Indiana University

characteristic: INSDC center name

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt10


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt16


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt21


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt23


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt27


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt40


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt42


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt46


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt53


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt55


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt58


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt67


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt68


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt69


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt70


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt71


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt74


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt75


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt76


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt78


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt80


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt81


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt82


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt83


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt84


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt85


text: live

text: Generic

text: Permafrost metagenome ActiveLayerDay2

characteristic: description

text: terrestrial

text: Alaska

text: permafrost

text: USA:Alaska

text: Alaskan Permafrost

text: 69.373 N -152.441 W

text: soil metagenome

text: Permafrost metagenome ActiveLayerDay2 library


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt86


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt87


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt89


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt90


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt92


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt93


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt94


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt96


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 wt99


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 mutL2


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12

text: M2 mutL6


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12


text: live

text: Generic

text: Permafrost metagenome ActiveLayerDay0

text: terrestrial

characteristic: env biome

text: Alaska

text: permafrost

text: USA:Alaska

text: Alaskan Permafrost

text: 69.373 N -152.441 W

text: soil metagenome

text: Permafrost metagenome ActiveLayerDay0 library


text: live

text: Generic

text: terrestrial

text: Alaska

text: permafrost

text: USA:Alaska

text: Alaskan Permafrost

characteristic: isolation source

text: 69.373 N -152.441 W

text: soil metagenome

text: Permafrost metagenome PermafrostLayerDay7 library


text: live

text: Generic

text: terrestrial

text: Alaska

text: permafrost

text: USA:Alaska

text: Alaskan Permafrost

text: 69.373 N -152.441 W

characteristic: lat lon

text: soil metagenome

text: Permafrost metagenome PermafrostLayerDay2 library


722537.7825.Genomic DNA.E_coli_MG1655

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Escherichia coli

characteristic: sample id

text: Genomic DNA

characteristic: sample type

text: Other

characteristic: sex

text: E. coli MG1655 Genomic DNA sample E_coli_MG1655


text: Human Genome Research Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: cell type

text: Mus musculus

text: control

characteristic: shrna

text: mouse mammary tumor

text: mouse mammary tumor

characteristic: tissue


characteristic: External Id

text: Human Genome Research Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mus musculus

characteristic: organism

text: mouse mammary tumor

text: mouse mammary tumor

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

characteristic: description

text: terrestrial

characteristic: env biome

text: Alaska

text: permafrost

text: USA:Alaska

text: Alaskan Permafrost

characteristic: isolation source

text: 69.373 N -152.441 W

characteristic: lat lon

text: soil metagenome

characteristic: sample number

text: Permafrost metagenome PermafrostLayerDay0 library


text: DOE Joint Genome Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Populus deltoides

text: Populus deltoides

text: Generic sample from Populus deltoides


722537.5087.Genomic DNA.Rhodobacter LW1

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Generic

characteristic: biosamplemodel

text: Cereibacter sphaeroides 2.4.1

text: Rhodobacter LW1

characteristic: sample id

text: Genomic DNA

characteristic: sample type

text: Other

characteristic: sex

characteristic: strain

text: Rhodobacter sphaeroides 2.4.1 Genomic DNA sample Rhodobacter LW1

text: type strain of Rhodobacter sphaeroides

characteristic: type material


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Populus tremula x alba

text: Populus tremula x Populus alba

characteristic: organism

text: Generic sample from Populus tremula x Populus alba

characteristic: title


text: University of Saarland, Medical Faculty

characteristic: INSDC center name

text: live

text: Generic

text: HERV group specific RT-PCR product, cloned into pGEM, randomly picked clones sequenced using vector primer

characteristic: description

text: tumor stage pT2

characteristic: dev-stage

text: Homo sapiens

text: Carcinoma of human urothelium (bladder cancer)

characteristic: tissue-type

text: HERV cDNA

text: Plasmid

text: pGEM

characteristic: vector


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: mycelium

text: Rhizopogon salebrosus TDB-379 liquid culture

text: 1 week

text: liquid culture

characteristic: in vivo conditions

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Rhizopogon salebrosus TDB-379

text: Generic sample from Rhizopogon salebrosus TDB-379


characteristic: External Id

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

characteristic: biosamplemodel

text: Female

characteristic: host sex

text: Mycobacterium tuberculosis H37Rv

characteristic: sample name

characteristic: strain

text: Generic sample from Mycobacterium tuberculosis H37Rv


text: Center for Biomedical Informatics, Harvard Medical School

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Fibroblast cells; embryonic

characteristic: cell type

text: wild type

characteristic: genotype

text: Mus musculus

characteristic: organism

text: embryonic fibroblast

text: WT

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Fibroblast cells; embryonic

text: Mus musculus

text: embryonic fibroblast


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Generic

text: Oryza sativa Kitaake

characteristic: description

text: Oryza sativa Japonica Group

characteristic: sample number

text: Kitaake

text: Generic sample from Oryza sativa Japonica Group


Sequencing of HBV in 48 HCC samples

text: National University of Singapore

text: live

text: Generic

characteristic: NCBI submission model

text: Sequencing of HBV DNA enriched from HCC genomic DNA using the FLX genome sequencer.

text: Homo sapiens

text: Sequencing of HBV in 48 HCC samples


text: Indiana University

text: live

text: Generic

text: Escherichia coli K-12


TCM treatment

text: SJTU

text: live

text: Generic

text: Rat gut microbiota analysis

text: gut metagenome

text: Structural modulation of gut microbiota in a rat non-alcoholic fatty liver disease model during treatment with a Chinese herbal formula


text: DOE Joint Genome Institute

text: live

text: Generic

text: Chlamydomonas reinhardtii CC-1021

text: Chlamydomonas reinhardtii

text: Generic sample from Chlamydomonas reinhardtii


IL 22 and gut microbiota

text: SJTU

text: live

text: Generic

text: mouse gut metagenome

text: Interleukin-22 deficiency alters colonic commensal flora to be transmissible and colitogenic


text: DOE Joint Genome Institute

text: live

text: Generic

text: Desulfonatronum lacustre DSM 10312

text: Desulfonatronum lacustre DSM 10312

text: DSM 10312

text: Generic sample from Desulfonatronum lacustre DSM 10312


text: DOE Joint Genome Institute

text: live

text: Generic

text: Jiangella gansuensis DSM 44835

text: Jiangella gansuensis DSM 44835

text: DSM 44835

text: Generic sample from Jiangella gansuensis DSM 44835


skin commensals immunity

text: NIH

text: live

text: Generic

text: C57BL/6 specific pathogen-free mice were purchased from Taconic farms and The Jackson Laboratory. Germ-free C57BL/6 mice were bred at Taconic Farms and maintained in the NIAID gnotobiotic facility. Female 3-week-old C57BL/6 mice were provided ampicillin (1 g/l), vancomycin (500 mg/l), neomycin trisulfate (1 g/l), and metronidazole (1 g/l) in drinking water for 4 to 8 weeks as previously described

text: Mus musculus

text: Compartmentalized control of skin immunity by resident commensals (Y. Belkaid)


text: DOE Joint Genome Institute

text: live

text: Generic

text: Vulcanithermus mediatlanticus DSM 14978

text: Vulcanithermus mediatlanticus DSM 14978

text: DSM 14978

text: Generic sample from Vulcanithermus mediatlanticus DSM 14978


722537.5375.Genomic DNA.3D7

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Plasmodium falciparum 3D7

characteristic: sample name

text: Generic sample from Plasmodium falciparum 3D7


text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Generic

text: Methanotorris formicicus Mc-S-70

text: Methanotorris formicicus Mc-S-70

characteristic: strain

text: Generic sample from Methanotorris formicicus Mc-S-70


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Phycomyces blakesleeanus NRRL 1555

text: Phycomyces blakesleeanus NRRL 1555(-)

text: NRRL 1555

text: Generic sample from Phycomyces blakesleeanus NRRL 1555(-)


text: Broad Institute

text: live

text: Generic

text: Generic

text: West Nile virus

text: Generic sample from West Nile virus


text: Broad Institute

text: live

text: Generic

text: Generic

text: Human immunodeficiency virus 1

text: Generic sample from Human immunodeficiency virus 1


text: DOE Joint Genome Institute

text: live

text: Generic

text: Oryzias latipes

text: Oryzias latipes

text: Generic sample from Oryzias latipes


text: Uppsala University

text: live

text: Generic

text: Ostrich samples from Sahlins struts, Borlange, Sweden. Preserved brain and liver tissues in RNAlater (Qiagen, Hilden, Germany). This sample contains pooled RNA from male liver tissue, individual: 21, 22 and 26

text: Struthio camelus

text: Absence of dosage compensation and the arrested stage of sex chromosome evolution in ostriches: LM3


name: Gossypium hirsutum genic enriched sequencing project

text: NBRI

text: live

text: Generic

text: Six diverse Gossypium hirsutum germplasm were selected on the basis of their genetic distance observed in AFLP analysis.The genomic DNA from leaf tissue was isolated using modified C-TAB method. The genomic DNA was completely digested using ClaI and HpaII methylation sensitive enzymes and digested sample from 300bp to 5kb were selected for sequencing.

text: Gossypium hirsutum

text: 454 sequencing of Gossypium hirsutum genic enriched library


text: Epigenetics Research Laboratory, Cancer Department, Garvan Institute of Medical Research

text: live

text: Generic

text: PrEC

characteristic: cell line

text: Homo sapiens

text: PrEC

text: PrEC Cells Input gDNA-seq


text: live

text: Generic

text: LNCaP

text: Homo sapiens

characteristic: organism

text: LNCaP

text: LNCaP Cells Input gDNA-seq


text: live

text: Generic

text: PrEC

text: Homo sapiens

text: PrEC

text: PrEC Cells RNA-seq

characteristic: title


characteristic: INSDC first public

text: live

text: Generic

text: LNCaP

text: Homo sapiens

text: LNCaP

text: LNCaP Cells RNA-seq


characteristic: INSDC last update

text: live

text: Generic

text: PrEC

text: Homo sapiens

text: PrEC

text: Transcription Start Site Sequencing of PrEC Cells


characteristic: INSDC secondary accession

text: live

text: Generic

text: LNCaP

text: Homo sapiens

text: LNCaP

text: Transcription Start Site Sequencing of LNCaP Cells


text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: IMR90 Cells Methylated DNA


characteristic: External Id

text: live

text: Generic

text: PrEC

characteristic: chip antibody

text: Abcam

characteristic: chip antibody manufacturer

text: Homo sapiens

text: PrEC

text: PrEC Cells H3K4me3 ChIP-seq


text: live

text: Generic

characteristic: NCBI submission model

text: LNCaP

text: Abcam

text: Homo sapiens

text: LNCaP

text: LNCaP Cells H3K4me3 ChIP-seq


text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

text: PrEC

text: PrEC Cells H3K27me3 ChIP-seq


text: live

text: Generic

text: Santa Cruz

text: Homo sapiens

text: LNCaP

text: LNCaP Cells H3K27me3 ChIP-seq


text: live

text: Generic

text: PrEC

text: CTCF

text: Millipore

text: Homo sapiens

text: PrEC

text: PrEC Cells CTCF ChIP-seq


text: live

text: Generic

text: LNCaP

text: CTCF

text: Millipore

text: Homo sapiens

text: LNCaP

text: LNCaP Cells CTCF ChIP-seq


text: Uppsala University

text: live

text: Generic

text: Ostrich samples from Sahlins struts, Borlange, Sweden. Preserved brain and liver tissues in RNAlater (Qiagen, Hilden, Germany). This sample contains pooled RNA from female liver tissue, individual: 6, 8 and 11

characteristic: description

text: Struthio camelus

text: Absence of dosage compensation and the arrested stage of sex chromosome evolution in ostriches: LF1


name: 1133005704026 Leptospira interrogans serovar Medanensis str. UT053 LS454110-PE-ILI33-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Medanensis str. UT053

text: Generic sample from Leptospira interrogans serovar Medanensis str. UT053


name: 1133005704028 Leptospira borgpetersenii serovar Castellonis str. 200801910 LS454121-PE-ILI69-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira borgpetersenii serovar Castellonis str. 200801910

text: Generic sample from Leptospira borgpetersenii serovar Castellonis str. 200801910


text: Maria Figueroa, Pathology, University of Michigan

text: live

text: Generic

text: Hematopoietic cells Lin- Sca1+ Kit+

characteristic: cell type

text: Idh1-R132H Knock-in

characteristic: genotype/variation

text: Mus musculus

text: LSK_Idh1-R132H Knock-in

text: 129Ola x C57Bl/6J

characteristic: strain background

text: Bone marrow

characteristic: tissue source


characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Hematopoietic cells Lin- Sca1+ Kit+

text: Wild-type

text: Mus musculus

text: LSK_wild type

text: 129Ola x C57Bl/6J

text: Bone marrow


Chowder Hill _Bulk: Shipboard frozen

text: Harvard University

text: live

text: Generic

text: 16S analysis of immediately frozen samples after collection

text: marine sediment metagenome

characteristic: organism

text: Chowder Hill_Bulk

characteristic: title


Flyland-F-C

text: Baylor College of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Pooled sample of 300 randomly selected female flies out of 2000 Flyland individual female flies.

text: Drosophila melanogaster

text: whole individuals

characteristic: source of DNA

text: Generic sample from Drosophila melanogaster


Flyland-F-St

characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Pooled sample of the 300 longest living female flies under starvation out of 2000 Flyland individual female flies.

text: Drosophila melanogaster

text: whole individuals


Flyland-FCC-F

text: Baylor College of Medicine

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Pooled sample of the 300 female flies with the fastest chillcoma recovery time out of 2000 Flyland individual female flies.

characteristic: description

text: Drosophila melanogaster

text: whole individuals


Flyland-SCC-F

text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Pooled sample of the 300 female flies with the slowest chillcoma recovery time out of 2000 Flyland individual female flies.

text: Drosophila melanogaster

text: whole individuals


Flyland-HS-F

text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Pooled sample of the 300 female flies with the highest startle response times out of 2000 Flyland individual female flies.

text: Drosophila melanogaster

text: whole individuals


Flyland-LS-F

text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Pooled sample of the 300 female flies with the lowest startle response times out of 2000 Flyland individual female flies.

text: Drosophila melanogaster

text: whole individuals


LMG 25863

text: Institute for Agricultural and Fisheries Research (ILVO)

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.plant-associated

text: Fragaria x ananassa

characteristic: biome

characteristic: collection date

text: LMG 25863, strain of Xanthomonas fragariae used in BioProject PRJNA80793

text: diagnostic sample

characteristic: feature

text: Belgium

characteristic: geo loc name

characteristic: investigation type

text: 50.98079 N 3.77768 E

characteristic: lat lon

text: plant

characteristic: material

text: Xanthomonas fragariae LMG 25863

text: Genome analysis of Xanthomonas fragariae LMG 25863

characteristic: project name

text: unpublished

text: Fragaria x ananassa

characteristic: specific host

text: LMG 25863

characteristic: strain

text: Cultured Bacterial/Archaeal sample for Xanthomonas fragariae


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Oscillatoriales cyanoacterium JSC-1

text: [Leptolyngbya] sp. JSC-1

characteristic: organism

characteristic: sample number

text: Generic sample from Oscillatoriales cyanobacterium JSC-1

characteristic: title


Jefferson-bark

characteristic: External Id

text: DDPSC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Bark collected from 1 yr old from nursery grown ‘Jefferson’. trees collected late Spring, line OSU 703.007

characteristic: description

text: Corylus avellana

text: Jefferson-bark


Jefferson-leaves

text: DDPSC

text: live

text: Generic

text: Leaves from both 1 yr old nursery and field grown ‘Jefferson’. Trees collected late Spring, line OSU 703.007

text: Corylus avellana

text: Jefferson-leaves


Jefferson-seedlings

text: DDPSC

text: live

text: Generic

text: Whole seedlings included the roots, seedlings progeny of cross of OSU 954.076 x OSU 976.091.

text: Corylus avellana

text: Jefferson-seedlings


Jefferson-barcelona-catkins

text: DDPSC

text: live

text: Generic

text: Catkins were collected from a field grown example of the Barcelona' accession (PI 557037), in the autumn.

text: Corylus avellana

text: Jefferson-barcelona-catkins


Needles_Bulk: Shipboard Frozen

text: Harvard University

text: live

text: Generic

text: marine sediment metagenome


Dead Dog _ Bulk: Shipboard frozen

text: Harvard University

text: live

text: Generic

text: marine sediment metagenome

text: Dead Dog _ Bulk


Chowder Hill _ Innoculum

text: Harvard University

text: live

text: Generic

text: marine sediment metagenome

text: Chowder Hill_ Innoculum


Dead Dog _ Innoculum

text: Harvard University

text: live

text: Generic

text: marine sediment metagenome

text: Dead Dog _ Innoculum


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I1 Whole seed 12 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I1 Embryo 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I1 Endosperm 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I1 Embryo 18 Days After Pollination


text: State Key Laboratory of Reproductive Biology, INSTITUTE OF ZOOLOGY, CHINESE ACADEMY OF SCIENCES

text: live

text: Generic

text: mature sperm released from cauda epididymis

characteristic: cell type

text: Mus musculus

text: mature sperm

text: mature sperm small RNAs


text: live

text: Generic

text: Mus musculus

text: adult testis

text: testis

characteristic: tissue

text: adult testis small RNAs


text: live

text: Generic

text: Mus musculus

text: adult uterus

text: uterus

text: adult uterus small RNAs


ASID

text: Universite Laval

text: live

text: Generic

text: marine metagenome

text: Pooled sample of 12 Arctic (Amundsen Gulf and Franklin Bay) sea ice samples from 2008


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

characteristic: gender

text: infection with P. falciparum 3D7G

characteristic: infection status

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

characteristic: time post bloodmeal

text: Infected nonpolysomal Set 1


text: Biochemistry, Virginia Tech

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: female

text: infection with P. falciparum 3D7G

text: Anopheles gambiae

text: midgut

characteristic: strain

text: 22-26 hrs

text: Infected polysomal Set 1


text: Biochemistry, Virginia Tech

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: female

text: uninfected control

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Uninfected nonpolysomal Set 1


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: uninfected control

text: Anopheles gambiae

characteristic: organism

text: midgut

text: 22-26 hrs

text: Uninfected polysomal Set 1

characteristic: title


characteristic: External Id

text: Biochemistry, Virginia Tech

characteristic: INSDC secondary accession

text: live

text: Generic

text: female

text: uninfected control

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Uninfected unfractionated Set 1


text: Biochemistry, Virginia Tech

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: female

text: infection with P. falciparum 3D7G

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Infected unfractionated Set 1


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: infection with P. falciparum 3D7G

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Infected nonpolysomal Set 2


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: infection with P. falciparum 3D7G

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Infected polysomal Set 2


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: uninfected control

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Uninfected nonpolysomal Set 2


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: uninfected control

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Uninfected polysomal Set 2


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: uninfected control

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Uninfected unfractionated Set 2


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: infection with P. falciparum 3D7G

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Infected unfractionated Set 2


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: infection with P. falciparum 3D7G

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Infected nonpolysomal Set 3


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: infection with P. falciparum 3D7G

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Infected polysomal Set 3


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: uninfected control

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Uninfected nonpolysomal Set 3


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: uninfected control

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Uninfected polysomal Set 3


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: uninfected control

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Uninfected unfractionated Set 3


text: Biochemistry, Virginia Tech

text: live

text: Generic

text: female

text: infection with P. falciparum 3D7G

text: Anopheles gambiae

text: midgut

text: 22-26 hrs

text: Infected unfractionated Set 3


text: USDA

text: live

text: Generic

text: This is animal number one in an ATRA treatment study. Samples are from pig alveolar macrophages.

characteristic: description

text: Sus scrofa domesticus


text: USDA

text: live

text: Generic

text: This is animal number 2 in an ATRA treatment study. Samples are from pig alveolar macrophages.

text: Sus scrofa domesticus


GI

text: Beijing Institute of Biology Science

text: live

text: Generic

text: Locusta migratoria

text: Fat body sample of gregarious locusts in response to fungi M. anisopliae infection


GC

text: Beijing Institute of Biology Science

text: live

text: Generic

text: Locusta migratoria

text: Fatbody sample of gregrarious locusts as control


SI

text: Beijing Institute of Biology Science

text: live

text: Generic

text: Locusta migratoria

text: Fat body sample of solitary locusts in response to fungi M. anisopliae infection


SC

text: Beijing Institute of Biology Science

text: live

text: Generic

text: Locusta migratoria

text: Fat body sample of solitary locusts as control


text: USDA

text: live

text: Generic

text: This is animal number 3 in an ATRA treatment study. Samples are from pig alveolar macrophages.

text: Sus scrofa domesticus


text: Istanbul Technical University

text: live

text: Generic

text: Sample taken from a lab-scale activated sludge reactor (SRT:2d - Control sample).

text: Bacteria

text: Activated Sludge Biomass


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I1 Endosperm 18 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I2 Endosperm 12 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I2 Whole seed 12 Days After Pollination


text: Istanbul Technical University

text: live

text: Generic

text: Sample taken from lab-scale activated sludge reactor (SRT:2d - Control Sample)

text: Bacteria

text: Activated Sludge Biomass


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I2 Embryo 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I2 Endosperm 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I2 Embryo 18 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I2 Endosperm 18 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I3 Endosperm 12 Days After Pollination


text: Istanbul Technical University

text: live

text: Generic

text: Sample taken from lab-scale activated sludge reactor (SRT: 10d - Control Sample)

text: Bacteria

text: Activated Sludge Biomass


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I3 Whole seed 12 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I3 Embryo 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I3 Endosperm 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I3 Embryo 18 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I3 Endosperm 18 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I1 Endosperm 12 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I1 Whole seed 12 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I1 Embryo 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I1 Endosperm 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I1 Embryo 18 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I1 Endosperm 18 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I2 Endosperm 12 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I2 Whole seed 12 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I2 Embryo 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I2 Endosperm 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I2 Embryo 18 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I2 Endosperm 18 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I3 Endosperm 12 Days After Pollination


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I3 Whole seed 12 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I3 Embryo 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I3 Endosperm 15 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I3 Embryo 18 Days After Pollination


text: live

text: Generic

text: Zea mays subsp. mays

text: KSS_I3 Endosperm 18 Days After Pollination


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT : 2d), which was exposed to TET antibiotic chronically (2 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic exposure to TET (2 days - SRT: 2d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 2d), which was chronically exposed to TET antibiotic (4 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to TET (4 days - SRT:2d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT : 10d), which was chronically exposed to TET antibiotic (10 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to TET (10 days - SRT: 10d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 10d), which was chronically exposed to TET antibiotic (22 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to TET (22 days - SRT:10d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 10d), which was chronically exposed to TET antibiotic (30 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to TET (30 days - SRT: 10d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 10d), which was chronically exposed to TET antibiotic for 30 days. 50 days sample shows recovery of the system.

text: Bacteria

text: Activated Sludge Biomass - Recovery after Chronic Exposure to TET (50 days - SRT:10d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 2d), which was chronically exposed to ERY antibiotic (3 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to ERY (3 days - SRT:2d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 2d), which was chronically exposed to ERY antibiotic (10 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to ERY (10 days - SRT:2d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 10d), which was chronically exposed to ERY antibiotic (10 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to ERY (10 days - SRT: 10d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 10d), which was chronically exposed to ERY antibiotic (31 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to ERY (31 days - SRT: 10d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 2d), which was chronically exposed to SMX antibiotic (2 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to SMX (2 days - SRT:2d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 2d), which was chronically exposed to SMX antibiotic (4 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to SMX (4 days - SRT:2d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 2d), which was chronically exposed to SMX antibiotic (7 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to SMX (7 days - SRT:2d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 10d), which was chronically exposed to SMX antibiotic (24 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to SMX (24 days - SRT: 10d)


text: Istanbul Technical University

text: live

text: Generic

text: Sample was taken from a lab-scale activated sludge reactor (SRT: 10d), which was chronically exposed to SMX antibiotic (30 days).

text: Bacteria

text: Activated Sludge Biomass - Chronic Exposure to SMX (30 days - SRT: 10d)


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Zea mays subsp. mays

text: KLS_I1 Endosperm 12 Days After Pollination


text: USDA

text: live

text: Generic

text: DS2 sequencing, animal 1.

text: Sus scrofa domesticus

text: DS2_1_Animal 1


text: USDA

text: live

text: Generic

text: DS2 sequencing, animal 2

text: Sus scrofa domesticus


text: USDA

text: live

text: Generic

text: DS2 sequencing, animal 3.

text: Sus scrofa domesticus