text: dbGaP

text: live

text: Generic

text: G_DNA_Buccal mucosa

text: HMP

text: male

characteristic: host sex

text: G_DNA_Buccal mucosa

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_Buccal mucosa of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


status: PUBLIC

characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: G_DNA_Attached/Keratinized gingiva

tag: attribute

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: G_DNA_Attached/Keratinized gingiva

text: human metagenome

text: Control Set

characteristic: study name

characteristic: submitted subject id

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Attached/Keratinized gingiva of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

text: live

text: Generic

text: G_DNA_Palatine Tonsils

text: HMP

text: male

characteristic: host sex

text: G_DNA_Palatine Tonsils

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_Palatine Tonsils of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: HMP

text: male

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_Throat of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: G_DNA_Supragingival plaque

characteristic: analyte type

text: HMP

text: male

text: G_DNA_Supragingival plaque

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_Supragingival plaque of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_Subgingival plaque

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: G_DNA_Subgingival plaque

text: human metagenome

text: Control Set

characteristic: study name

characteristic: submitted subject id

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Subgingival plaque of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_L_Retroauricular crease

text: HMP

text: male

characteristic: host sex

text: G_DNA_L_Retroauricular crease

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

text: Human metagenome sample from G_DNA_L_Retroauricular crease of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_R_Retroauricular crease

text: HMP

text: male

text: G_DNA_R_Retroauricular crease

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_R_Retroauricular crease of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: G_DNA_L_Antecubital fossa

text: HMP

text: male

text: G_DNA_L_Antecubital fossa

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_L_Antecubital fossa of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_R_Antecubital fossa

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: G_DNA_R_Antecubital fossa

text: human metagenome

text: Control Set

characteristic: study name

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_R_Antecubital fossa of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_Anterior nares

text: HMP

text: male

characteristic: host sex

text: G_DNA_Anterior nares

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Anterior nares of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: HMP

text: male

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_Stool of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: HMP

text: male

text: human metagenome

text: Control Set

text: HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: submitted sample id


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from G_DNA_Saliva of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_Tongue dorsum

text: HMP

text: male

characteristic: host sex

text: G_DNA_Tongue dorsum

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_Tongue dorsum of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Hard palate

text: HMP

text: male

text: G_DNA_Hard palate

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Hard palate of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Buccal mucosa

text: HMP

text: male

text: G_DNA_Buccal mucosa

text: human metagenome

text: Control Set

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Attached/Keratinized gingiva

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: G_DNA_Attached/Keratinized gingiva

text: human metagenome

text: Control Set

characteristic: submitted sample id


text: dbGaP

text: live

text: Generic

text: G_DNA_Palatine Tonsils

text: HMP

text: male

characteristic: host sex

text: G_DNA_Palatine Tonsils

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: study name


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: HMP

text: male

text: human metagenome

text: Control Set

characteristic: submitted subject id


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Supragingival plaque

text: HMP

text: male

text: G_DNA_Supragingival plaque

text: human metagenome

text: Control Set

characteristic: submitter handle


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Subgingival plaque

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: G_DNA_Subgingival plaque

text: human metagenome

text: Control Set

characteristic: title


text: dbGaP

text: live

text: Generic

text: G_DNA_L_Retroauricular crease

text: HMP

text: male

characteristic: host sex

text: G_DNA_L_Retroauricular crease

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted sample id


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_R_Retroauricular crease

text: HMP

text: male

text: G_DNA_R_Retroauricular crease

text: human metagenome

text: Control Set

characteristic: study name


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_L_Antecubital fossa

text: HMP

text: male

text: G_DNA_L_Antecubital fossa

text: human metagenome

text: Control Set

characteristic: submitted subject id


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_R_Antecubital fossa

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: G_DNA_R_Antecubital fossa

text: human metagenome

text: Control Set

characteristic: submitter handle


text: dbGaP

text: live

text: Generic

text: G_DNA_Anterior nares

text: HMP

text: male

characteristic: host sex

text: G_DNA_Anterior nares

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: HMP

text: female

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_Stool of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: HMP

text: female

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from G_DNA_Saliva of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Tongue dorsum

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_Tongue dorsum

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_Tongue dorsum of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_Hard palate

text: HMP

text: female

characteristic: host sex

text: G_DNA_Hard palate

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Hard palate of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Buccal mucosa

text: HMP

text: female

text: G_DNA_Buccal mucosa

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_Buccal mucosa of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Attached/Keratinized gingiva

text: HMP

text: female

text: G_DNA_Attached/Keratinized gingiva

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_Attached/Keratinized gingiva of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Palatine Tonsils

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_Palatine Tonsils

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from G_DNA_Palatine Tonsils of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: HMP

text: female

characteristic: host sex

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_Throat of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Supragingival plaque

text: HMP

text: female

text: G_DNA_Supragingival plaque

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Supragingival plaque of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Subgingival plaque

text: HMP

text: female

text: G_DNA_Subgingival plaque

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_Subgingival plaque of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_L_Retroauricular crease

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_L_Retroauricular crease

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_L_Retroauricular crease of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_R_Retroauricular crease

text: HMP

text: female

characteristic: host sex

text: G_DNA_R_Retroauricular crease

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: study name

text: Human metagenome sample from G_DNA_R_Retroauricular crease of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_L_Antecubital fossa

text: HMP

text: female

text: G_DNA_L_Antecubital fossa

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_L_Antecubital fossa of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_R_Antecubital fossa

text: HMP

text: female

text: G_DNA_R_Antecubital fossa

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from G_DNA_R_Antecubital fossa of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Anterior nares

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_Anterior nares

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_Anterior nares of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

text: live

text: Generic

text: G_DNA_R_Antecubital fossa

text: HMP

text: female

characteristic: host sex

text: G_DNA_R_Antecubital fossa

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

text: HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: submitted sample id


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Anterior nares

text: HMP

text: female

text: G_DNA_Anterior nares

text: human metagenome

text: Control Set

characteristic: study name


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: HMP

text: male

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_Saliva of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Tongue dorsum

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: G_DNA_Tongue dorsum

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Tongue dorsum of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_Hard palate

text: HMP

text: male

characteristic: host sex

text: G_DNA_Hard palate

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

text: Human metagenome sample from G_DNA_Hard palate of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Buccal mucosa

text: HMP

text: male

text: G_DNA_Buccal mucosa

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_Buccal mucosa of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Attached/Keratinized gingiva

text: HMP

text: male

text: G_DNA_Attached/Keratinized gingiva

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from G_DNA_Attached/Keratinized gingiva of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Palatine Tonsils

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: G_DNA_Palatine Tonsils

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_Palatine Tonsils of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: HMP

text: male

characteristic: host sex

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Throat of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Supragingival plaque

text: HMP

text: male

text: G_DNA_Supragingival plaque

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_Supragingival plaque of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Subgingival plaque

text: HMP

text: male

text: G_DNA_Subgingival plaque

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_Subgingival plaque of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_L_Retroauricular crease

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: G_DNA_L_Retroauricular crease

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from G_DNA_L_Retroauricular crease of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_R_Retroauricular crease

text: HMP

text: male

characteristic: host sex

text: G_DNA_R_Retroauricular crease

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_R_Retroauricular crease of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_L_Antecubital fossa

text: HMP

text: male

text: G_DNA_L_Antecubital fossa

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from G_DNA_L_Antecubital fossa of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_R_Antecubital fossa

text: HMP

text: male

text: G_DNA_R_Antecubital fossa

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_R_Antecubital fossa of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Anterior nares

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: G_DNA_Anterior nares

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_Anterior nares of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: HMP

text: male

characteristic: host sex

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: study name

text: Human metagenome sample from G_DNA_Stool of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: HMP

text: female

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_Stool of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_L_Retroauricular crease

text: HMP

text: female

text: G_DNA_L_Retroauricular crease

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from G_DNA_L_Retroauricular crease of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_R_Retroauricular crease

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_R_Retroauricular crease

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_R_Retroauricular crease of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

text: live

text: Generic

text: G_DNA_L_Antecubital fossa

text: HMP

text: female

characteristic: host sex

text: G_DNA_L_Antecubital fossa

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_L_Antecubital fossa of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_R_Antecubital fossa

text: HMP

text: female

text: G_DNA_R_Antecubital fossa

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from G_DNA_R_Antecubital fossa of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Anterior nares

text: HMP

text: female

text: G_DNA_Anterior nares

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_Anterior nares of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Vaginal introitus

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_Vaginal introitus

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Vaginal introitus of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_Mid vagina

text: HMP

text: female

characteristic: host sex

text: G_DNA_Mid vagina

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

text: Human metagenome sample from G_DNA_Mid vagina of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Posterior fornix

text: HMP

text: female

text: G_DNA_Posterior fornix

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_Posterior fornix of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: HMP

text: female

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from G_DNA_Saliva of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: human metagenome

text: Control Set

text: HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: submitted subject id


text: dbGaP

text: live

text: Generic

text: G_DNA_Tongue dorsum

text: HMP

text: female

characteristic: host sex

text: G_DNA_Tongue dorsum

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Tongue dorsum of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Hard palate

text: HMP

text: female

text: G_DNA_Hard palate

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_Hard palate of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Buccal mucosa

text: HMP

text: female

text: G_DNA_Buccal mucosa

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_Buccal mucosa of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Attached/Keratinized gingiva

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_Attached/Keratinized gingiva

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from G_DNA_Attached/Keratinized gingiva of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_Palatine Tonsils

text: HMP

text: female

characteristic: host sex

text: G_DNA_Palatine Tonsils

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_Palatine Tonsils of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: HMP

text: female

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Throat of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Supragingival plaque

text: HMP

text: female

text: G_DNA_Supragingival plaque

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_Supragingival plaque of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Subgingival plaque

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_Subgingival plaque

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_Subgingival plaque of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: HMP

text: female

characteristic: host sex

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: study name

text: Human metagenome sample from G_DNA_Stool of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_L_Retroauricular crease

text: HMP

text: female

text: G_DNA_L_Retroauricular crease

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_L_Retroauricular crease of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_R_Retroauricular crease

text: HMP

text: female

text: G_DNA_R_Retroauricular crease

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from G_DNA_R_Retroauricular crease of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_L_Antecubital fossa

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_L_Antecubital fossa

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_L_Antecubital fossa of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

text: live

text: Generic

text: G_DNA_R_Antecubital fossa

text: HMP

text: female

characteristic: host sex

text: G_DNA_R_Antecubital fossa

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_R_Antecubital fossa of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Anterior nares

text: HMP

text: female

text: G_DNA_Anterior nares

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from G_DNA_Anterior nares of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Vaginal introitus

text: HMP

text: female

text: G_DNA_Vaginal introitus

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_Vaginal introitus of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Mid vagina

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_Mid vagina

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Mid vagina of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_Posterior fornix

text: HMP

text: female

characteristic: host sex

text: G_DNA_Posterior fornix

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

text: Human metagenome sample from G_DNA_Posterior fornix of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Posterior fornix

text: HMP

text: female

text: G_DNA_Posterior fornix

text: human metagenome

text: Control Set

text: HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: submitted sample id


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: HMP

text: female

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from G_DNA_Saliva of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Tongue dorsum

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_Tongue dorsum

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_Tongue dorsum of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: G_DNA_Hard palate

text: HMP

text: female

characteristic: host sex

text: G_DNA_Hard palate

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Hard palate of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Buccal mucosa

text: HMP

text: female

text: G_DNA_Buccal mucosa

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_Buccal mucosa of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Attached/Keratinized gingiva

text: HMP

text: female

text: G_DNA_Attached/Keratinized gingiva

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from G_DNA_Attached/Keratinized gingiva of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: G_DNA_Palatine Tonsils

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: G_DNA_Palatine Tonsils

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from G_DNA_Palatine Tonsils of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: HMP

text: female

characteristic: host sex

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted subject id

text: Human metagenome sample from G_DNA_Throat of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: G_DNA_Supragingival plaque

text: HMP

text: female

text: G_DNA_Supragingival plaque

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from G_DNA_Supragingival plaque of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G_DNA_Subgingival plaque

text: HMP

text: female

text: G_DNA_Subgingival plaque

text: human metagenome

text: Control Set

text: Human metagenome sample from G_DNA_Subgingival plaque of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


Cerrado

text: Universidade Federal do Rio de Janeiro

text: live

text: Generic

characteristic: SRA accession

text: In order to understand the influence of sugarcane cultivation and crop management on diversity of soil bacterial community, we studied two areas cultivated with sugarcane under different management regimes (pre-harvest burn and mechanical, unburnt harvest, or green cane), and a control area with native Cerrado vegetation of a field site in the Southwest of Goi*s State, Brazil. This are soils samples (0-10cm layer) of a native Cerrado area.

characteristic: description

text: soil metagenome

text: Cerrado Soil Pirossequencing


WT-Input

text: Rutgers University

text: live

text: Generic

text: Chromatin from wild-type mouse cerebellum was fragmented by DNAse treatment and sonication to an average size of 250 bp. This was used to create a SOLiD sequencing library using the DNA fragment library kit.

text: Mus musculus

text: Sheared input chromatin/DNA from wild-type mouse cerebellum


text: Rutgers University

text: live

text: Generic

text: Chromatin from wild-type mouse cerebellum was fragmented by DNase and sonication to an average size of 250 bp and then immunoprecipitated with antibodies specific for HDAC4. The precipitated complexes were then used to prepare a SOLiD sequencing library using the DNA fragment library kit. Barcoded library were pooled and run on a SOLiD v3.5 system for 35 nt of sequence per fragment.

text: Mus musculus

text: HDAC4 immunoprecipitated chromatin from wild-type mouse cerebellum


text: Rutgers University

text: live

text: Generic

text: Chromatin from ATM-/- mouse cerebellum was fragmented by DNase and sonication to an average size of 250 bp and then immunoprecipitated with antibodies specific for HDAC4. The precipitated complexes were then used to prepare a SOLiD sequencing library using the DNA fragment library kit. Barcoded library were pooled and run on a SOLiD v3.5 system for 35 nt of sequence per fragment.

text: Mus musculus

text: HDAC4 immunoprecipitation of chromatin from ATM-/- mouse cerebellum


text: California Institute of Technology

text: live

text: Generic

text: Translatome for AP1 domain cells at flower stage 4

text: Arabidopsis thaliana

text: AP1, Stage 4


text: California Institute of Technology

text: live

text: Generic

text: Translatome for AP1 domain cells at flower stage 6-7

text: Arabidopsis thaliana

text: AP1 domain, flower stage 6-7


text: California Institute of Technology

text: live

text: Generic

text: Translatome for AP3 domain cells at flower stage 4

text: Arabidopsis thaliana

text: AP3 domain, flower stage 4


text: California Institute of Technology

text: live

text: Generic

text: Translatome for AP3 domain cells at flower stages 6-7

text: Arabidopsis thaliana

text: AP3 domain, flower stages 6-7


text: California Institute of Technology

text: live

text: Generic

text: Translatome for AG domain cells at flower stages 6-7

text: Arabidopsis thaliana

text: AG domain, flower stages 6-7


text: California Institute of Technology

text: live

text: Generic

text: Translatome for AG domain cells at flower stage 4

text: Arabidopsis thaliana

text: AG domain, flower stage 4


text: California Institute of Technology

text: live

text: Generic

text: Transcriptome for flower stage 4

text: Arabidopsis thaliana

text: Transcriptome, flower stage 4


text: California Institute of Technology

text: live

text: Generic

text: Translatome for flower stage 4

text: Arabidopsis thaliana

text: Translatome, flower stage 4


text: U. S. Horticultural Research Laboratory

text: live

text: Generic

text: Diaphorina citri

text: Diaphorina citri


TJC-5 plasmid library sample 1 (P1)

text: Yale University

text: live

text: Generic

text: Sample 1 of TJC-5 plasmid library DNA.

text: other sequences

text: plasmid library sample P1


TJC-5 plasmid library sample 2 (P2)

text: Yale University

text: live

text: Generic

text: Sample 2 of TJC-5 plasmid library DNA.

text: other sequences

text: plasmid library sample P2


TJC-5 recovered library sample 1 (R1)

text: Yale University

text: live

text: Generic

text: Sample 1 of TJC-5 recovered library DNA.

text: other sequences

text: recovered library sample R1


TJC-5 recovered library sample 2 (R2)

text: Yale University

text: live

text: Generic

text: Sample 2 of TJC-5 recovered library DNA.

text: other sequences

text: recovered library sample R2


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from spruce age class forest, A horizon; Position: 48* 28' 41.0628 9* 20' 3.876; Sampling date: 2008-04-27

text: soil metagenome

text: forest soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from spruce age class forest, A horizon; Position: 48* 22' 47.9634 9* 21' 5.2236; Sampling date: 2008-04-24

text: soil metagenome

text: forest soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from spruce age class forest, A horizon; Position: 48* 24' 44.1468 9* 21' 20.1276; Sampling date: 2008-04-24

text: soil metagenome

text: forest soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from beech age class forest, A horizon; Position: 48* 23' 56.7558 9* 14' 41.3772; Sampling date: 2008-04-26

text: soil metagenome

text: forest soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from beech age class forest, A horizon; Position: 48* 25' 10.6242 9* 24' 52.8552; Sampling date: 2008-04-27

text: soil metagenome

text: forest soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from beech age class forest, A horizon; Position: 48* 23' 38.583 9* 26' 45.3732; Sampling date: 2008-04-23

text: soil metagenome

text: forest soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from near natural beech forest, A horizon; Position: 48&#176; 23' 46.4562 9&#176; 15' 40.881; Sampling date: 2008-04-25

text: soil metagenome

text: forest soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from near natural beech forest, A horizon; Position: 48* 22' 57.324 9* 22' 56.5824; Sampling date: 2008-04-26

text: soil metagenome

text: forest soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from near natural beech forest, A horizon; Position: 48&#176; 22' 9.6456 9&#176; 24' 54.7842; Sampling date: 2008-04-23

text: soil metagenome

text: forest soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from fertilized intensely used grassland, A horizon; Position: 48&#176; 23' 52.8174 9&#176; 20' 31.1526; Sampling date: 2008-04-17

text: soil metagenome

text: meadow soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from fertilized intensely used grassland, A horizon; Position: 48&#176; 22' 36.6852 9&#176; 28' 22.0224; Sampling date: 2008-04-21

text: soil metagenome

text: meadow soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from fertilized intensely used grassland, A horizon; Position: 48&#176; 24' 31.9716 9&#176; 31' 56.5644; Sampling date: 2008-04-15

text: soil metagenome

text: meadow soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from fertilized meadows grazed by horse and cow, A horizon; Position: 48&#176; 22' 51.1962 9&#176; 25' 8.0004; Sampling date: 2008-04-22

text: soil metagenome

text: meadow soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from fertilized meadows grazed by horse and cow, A horizon; Position: 48* 23' 45.1536 9* 26' 21.1236; Sampling date: 2008-04-22

text: soil metagenome

text: meadow soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from fertilized meadows grazed by horse and cow, A horizon; Position: 48* 24' 4.5432 9* 26' 30.0402; Sampling date: 2008-04-22

text: soil metagenome

text: meadow soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from unfertilized pastures grazed by sheep, A horizon; Position: 48* 23' 29.1156 9* 22' 36.6486; Sampling date: 2008-04-17

text: soil metagenome

text: meadow soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from unfertilized pastures grazed by sheep, A horizon; Position: 48* 25' 21.504 9* 29' 31.6494; Sampling date: 2008-04-16

text: soil metagenome

text: meadow soil


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: Soil from unfertilized pastures grazed by sheep, A horizon; Position: 48* 23' 40.8156 9* 30' 10.0506; Sampling date: 2008-04-16

text: soil metagenome

text: meadow soil


Tfu muS illumina

text: Virginia Commonwealth University

text: live

text: Generic

text: Thermobifida fusca YX

text: YX

characteristic: strain

text: Laboratory evolution and multi-platform genome re-sequencing of the cellulolytic actinobacterium Thermobifida fusca


Gardnerella vaginalis HMP9231

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: This strain was isolated from the oral cavity

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 6: Finished39x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Endometrium

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Gardnerella vaginalis HMP9231

text: Gardnerella vaginalis HMP9231

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: CCUG 59494

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Gardnerella vaginalis HMP9231


name: Finegoldia magna HMP144-RLB-RL2-01-696 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.3

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: description

text: Level 2: High-Quality Draft68x;50

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Finegoldia magna BVS033A4

characteristic: organism

text: Finegoldia magna BVS033A4

text: Reference Genome

text: not determined

text: CCUG 59508

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Finegoldia magna BVS033A4

characteristic: title


name: Veillonella atypica HMP134-RLB-RL5-01-861 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler v. 2.3

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft25x;70

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Veillonella atypica ACS-134-V-Col7a

text: Veillonella atypica ACS-134-V-Col7a

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: not determined

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Veillonella atypica ACS-134-V-Col7a


name: Mobiluncus mulieris HMP137-RLB-RL3-01-692 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.3

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: description

text: Level 2: High-Quality Draft28x;46

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Mobiluncus mulieris FB024-16

characteristic: organism

text: Mobiluncus mulieris FB024-16

text: Reference Genome

text: not determined

characteristic: sop

text: CCUG 59489

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Mobiluncus mulieris FB024-16


name: Prevotella disiens HMP138-BP8KB-A7NB-01-595 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Celera Assembler v. 6.1

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft18x;78

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Prevotella disiens FB035-09AN

text: Prevotella disiens FB035-09AN

text: Reference Genome

text: not determined

text: CCUG 59491

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Prevotella disiens FB035-09AN

characteristic: title


name: Finegoldia magna HMP142-RLB-RL1-01-789 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.3

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: description

text: Level 2: High-Quality Draft47x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Finegoldia magna ACS-171-V-Col3

characteristic: organism

text: Finegoldia magna ACS-171-V-Col3

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: CCUG 59495

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Finegoldia magna ACS-171-V-Col3


name: Atopobium vaginae HMP146-RLB-RL4-01-865 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler v. 2.3

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft57x;34

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Fannyhessea vaginae PB189-T1-4

text: Atopobium vaginae PB189-T1-4

text: Reference Genome

text: not determined

characteristic: sop

text: CCUG 55227

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Atopobium vaginae PB189-T1-4


characteristic: External Id

text: DOE-CSP 2010

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Keywords: GSC:MIGS:2.1

characteristic: description

characteristic: investigation type

text: Terriglobus saanensis SP1PR4

characteristic: organism

text: Terriglobus saanensis SP1PR4

characteristic: strain

text: Terriglobus saanensis SP1PR4, complete genome.

characteristic: title


name: Veillonella atypica HMP149-RLB-RL6-01-793 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler v. 2.3

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft73x;63

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Veillonella atypica ACS-049-V-Sch6

text: Veillonella atypica ACS-049-V-Sch6

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: CCUG 59501

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Veillonella atypica ACS-049-V-Sch6


name: Bifidobacterium breve HMP152-BP3KB-A6NB-01-650 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

text: This strain was isolated from the vagina

characteristic: description

text: Level 6: Finished28.17x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Bifidobacterium breve ACS-071-V-Sch8b

characteristic: organism

text: Bifidobacterium breve ACS-071-V-Sch8b

text: Reference Genome

text: not determined

text: CCUG 59504

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bifidobacterium breve ACS-071-V-Sch8b

characteristic: title


text: MRC Laboratory of Molecular Biolgy

text: live

text: Generic

characteristic: antibody

text: Upstate Biotechnology

characteristic: antibody vendor

characteristic: cell type

text: Mus musculus

text: Th2 cells, H3KAc

text: spleen

characteristic: tissue


characteristic: External Id

text: MRC Laboratory of Molecular Biolgy

characteristic: INSDC center name

text: live

text: Generic

text: polyclonal rabbit IgG

text: Sigma

text: Mus musculus

text: Th2 cells, IgG

text: spleen


text: DOE-CSP 2008

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Prodigal 1.4, GenePRIMP

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

characteristic: Greengenes ID

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Coccus-shaped

characteristic: cell shape

text: Japan

characteristic: country

text: Keywords: GSC:MIGS:2.1

text: Hydrothermal vent, Deep sea, Fresh water

characteristic: environment

characteristic: investigation type

text: Deep-sea hydrothermal vent chimney at the Iheya Ridge in the Okinawa Trough Japan

characteristic: isolation site

text: deep-sea hydrothermal vent chimney at the Iheya Ridge in the Okinawa Trough

characteristic: isolation-source

text: Motile

characteristic: motility

text: Methanothermococcus okinawensis IH1

text: 4.5 - 8.5

characteristic: ph

text: Methanothermococcus okinawensis IH1

characteristic: project name

text: JCM 11175, DSM 14208

text: anaerobe

text: 40 - 75C

characteristic: temperature optimum

text: Thermophile

characteristic: temperature range

text: Methanothermococcus okinawensis IH1, complete genome.

text: autotroph

text: type strain of Methanothermococcus okinawensis

characteristic: type material


characteristic: External Id

text: Univ of Virginia

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Erythroleukemia cell line derived from a chronic myeloid leukemia patient in blast crisis.

characteristic: description

text: Homo sapiens

characteristic: organism

text: Human K562 cell line

characteristic: title


text: Institute for Genomics and Systems Biology, University of Chicago

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody name

characteristic: developmental stage

text: ChIP

characteristic: fraction

text: Ross Cagan/Proteintech

characteristic: manufacturer

text: Drosophila melanogaster

text: Sin3A_ChIPSeq_1 and 2


text: live

text: Generic

text: input

text: Drosophila melanogaster


text: live

text: Generic

text: ChIP

text: White Lab/Aviva

text: Drosophila melanogaster

text: hkb_ChIPSeq_1 and 2


text: live

text: Generic

text: NWG-GFP

text: ChIP

text: White Lab/Chemicon

text: Drosophila melanogaster

text: w3L_10T(Dfd-GFP)_ChIPSeq_1 and 2


text: live

text: Generic

text: NWG-GFP

text: ChIP

text: White Lab/Chemicon

text: Drosophila melanogaster

text: E16-24h_10T(Dfd-GFP)_ChIPSeq_1 and 2


text: live

text: Generic

text: ChIP

text: White Lab/Aviva

text: Drosophila melanogaster

text: Pcl_ChIPSeq_1, 2 and 3


text: live

text: Generic

text: ChIP

text: White Lab/Aviva

text: Drosophila melanogaster

text: disco_ChIPSeq_1 and 2


text: live

text: Generic

text: NWG-GFP

text: 3dFemale from 7T

text: ChIP

text: White Lab/Chemicon

text: Drosophila melanogaster

text: 3dFemale_7T(cad-GFP)_ChIPSeq_1 and 2


text: live

text: Generic

text: 3dFemale from 7T

text: input

text: Drosophila melanogaster


text: live

text: Generic

text: ChIP

text: White Lab/Aviva

text: Drosophila melanogaster

text: Trl_ChIPSeq_1 and 2


text: live

text: Generic

text: ChIP

text: White Lab/Aviva

text: Drosophila melanogaster

text: kni_ChIPSeq_1, 2 and 3


text: live

text: Generic

text: rbCBP

text: ChIP

text: Mattias Mannervik

text: Drosophila melanogaster


text: live

text: Generic

text: Kc

text: ChIP

text: Lake PlacidBIO

text: Drosophila melanogaster

text: Kc

text: K4me3_ChIPSeq_1 and 2


text: live

text: Generic

text: Kc

text: input

text: Drosophila melanogaster

text: Kc

text: K4me3 and Trl-D2_INPUT_1


text: live

text: Generic

text: Kc

text: input

text: Drosophila melanogaster

text: Kc


text: live

text: Generic

text: Kc

text: ChIP

text: White Lab/Aviva

text: Drosophila melanogaster

text: Kc


text: live

text: Generic

text: ChIP

text: Drosophila melanogaster

text: E8-16h_disco_ChIPSeq_1 and 2


text: live

text: Generic

text: input

text: White Lab/Aviva

text: Drosophila melanogaster


text: NCBI

text: live

text: Generic

text: Homo sapiens

text: Participant #6 in the Personal Genome Project


text: NCBI

text: live

text: Generic

text: Homo sapiens

text: NA20431 - Participant #1 in the Personal Genome Project


text: Baylor College of Medicine

text: live

text: Generic

text: USA: MA

characteristic: country

text: Saccoglossus kowalevskii

text: beach area of Waquoit Pond near Woods Hole, MA

characteristic: isolation-source

text: Saccoglossus kowalevskii

text: male

characteristic: sex

text: testes

characteristic: tissue type

text: Saccoglossus kowalevskii embryo at 15hrs post fertilization


characteristic: External Id

text: Univ of Virginia

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Myeloid cell line established from a chronic myeloid leukemia patient in blast crisis.

text: Homo sapiens

text: Human KU812 cell line


text: first flush candle

characteristic: BODYSITE

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Pinus taeda first flush candle normalized

characteristic: description

text: normalized

characteristic: library description

text: normalized

characteristic: library type

text: Pinus taeda

text: Generic sample from Pinus taeda


text: first flush candle

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Pinus taeda first flush candle

text: standard

text: standard

text: Pinus taeda

characteristic: organism

text: Generic sample from Pinus taeda

characteristic: title


text: stem

text: live

text: Generic

text: Pinus taeda stem pool

text: Seedlings were grown in a growth chamber until 7 mo. of age. Ten seedlings per treatment were used. For treatments 1-7, stems were cut at base above ground. In treatments 1-6, stems were placed in beakers containing 500 mL of the chemicals listed. Treatments 8-10 were carried out on seedlings still in potting cones. The pooled RNA sample contains equivalent amounts of total RNA isolated from each of the nine treatments. 1. 0.5mg/mL Clycoheximide 2. 100uM Gibberellic Acid 3. 1% H2O2 4. 100uM Indole-3-acetic acid 5. 100uM Methyl jasmonate 6. 100uM Kinetin 7. Dessication (cut stems placed on bench) 8. Cold Shock -20C 9. Heat Shock 45C 10. Wounding (stem crushed with pliers)

text: standard

text: Pinus taeda

text: half sibling family from 7-56

characteristic: strain

text: Generic sample from Pinus taeda


text: callus derived from needle tissue

text: live

text: Generic

text: Pinus taeda callus

text: Callus cells were grown in liquid medium (100 mL cultures) to a point where maximum cell density was obtained- 14 days. Elicitors were dissolved in culture medium and added to each culture to give the final concentrations listed below. Cultures were then incubated for another 4 hr. Following cell harvest and RNA isolation, equivalent amounts of total RNA were pooled and the pooled sample was treated with Ambion RNase free DNAse. 1. Methyl Jasmonate (100uM) 2. Gibbberellic Acid (100uM) 3. Kinetin (100uM) 4. Cycloheximide (0.5mg/mL) 5. Indole-3-acetic Acid (100uM) 6. Nitrophenol (100uM) 7. Sodium Azide (100uM) 8. Colchicine (100uM) 9. Sodium (meta) vanadate (100uM) 10. Hydrogen Peroxide (0.01%) 11. Chitin (1mg/mL) 12. Chitosan (100ug/mL) 13. Untreated Sirex noctilio venom glands (125mg/mL) 14. Boiled Sirex noctilio venom glands (125mg/mL)

text: standard

text: Pinus taeda

text: Generic sample from Pinus taeda


text: shoot

text: live

text: Generic

text: Pinus taeda mixed shoot tissues

text: Mixture of equivalent amounts of phloem, xylem, 1st year cones, 2nd year cones, crown xylem, apical tips, opposite xylem, and compression xylem. Sample treated with Ambion RNase-free DNAse.

text: standard

text: Pinus taeda

text: Generic sample from Pinus taeda


text: NCBI

text: live

text: Generic

text: Homo sapiens

text: NA21687 - Participant #5 in the Personal Genome Project


text: NCBI

text: live

text: Generic

text: Homo sapiens

text: NA21677 - Participant #4 in the Personal Genome Project


text: NCBI

text: live

text: Generic

text: Homo sapiens

text: NA21833 - Participant #9 in the Personal Genome Project


text: NCBI

text: live

text: Generic

text: Homo sapiens

text: NA21781 - Participant #8 in the Personal Genome Project


text: NCBI

text: live

text: Generic

text: Homo sapiens

text: NA21846 - Participant #10 in the Personal Genome Project


text: NCBI

text: live

text: Generic

text: Homo sapiens

text: NA21660 - Participant #3 in the Personal Genome Project


text: NCBI

text: live

text: Generic

text: Homo sapiens

text: NA21070 - Participant #2 in the Personal Genome Project


text: NCBI

text: live

text: Generic

text: Homo sapiens

text: NA21731 - Participant #7 in the Personal Genome Project


text: Baylor College of Medicine

text: live

text: Generic

text: Apis mellifera

text: Apis mellifera

text: Generic sample from Apis mellifera


AMEL.MA

text: Baylor College of Medicine

text: live

text: Generic

text: Apis mellifera

text: Apis mellifera

text: Maleszka

text: Generic sample from Apis mellifera


PM sperm 454

text: University of Kentucky

text: live

text: Generic

text: sperm

characteristic: cell type

text: 454 Titanium chemistry was used to generate shotgun reads from sperm genomic DNA of the sea lamprey (Petromyzon marinus). Animal was collected from the Great Lakes population and obtained through the Great Lakes Fisheries Commission lamprey trapping program.

text: Petromyzon marinus

text: 454 shotgun reads from Petromyzon marinus sperm gDNA


characteristic: External Id

text: HipHop, University of Toronto

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces_cerevisiae-nucleosome-reads


text: HipHop, University of Toronto

characteristic: INSDC center name

text: live

text: Generic

text: Saccharomyces bayanus

text: Saccharomyces bayanus

text: NRRL Y-11845


text: HipHop, University of Toronto

characteristic: INSDC secondary accession

text: live

text: Generic

text: Saccharomyces kudriavzevii

text: Saccharomyces kudriavzevii

text: IFO 1802

text: Saccharomyces_kudriavzevii-nucleosome-reads

text: culture from type material of Saccharomyces kudriavzevii

characteristic: type material


text: Michigan State University

text: live

characteristic: INSDC status

text: Generic

text: Chromatin IP from total genomic DNA, undisclosed antibody specificities. Flower bud tissue from Malus domestica cv. Golden Delicious

text: Malus domestica

text: Flower buds from Malus x domestica cv. Golden Delicious


text: Michigan State University

text: live

text: Generic

characteristic: NCBI submission model

text: Chromatin IP from total genomic DNA, undisclosed antibody specificities. Entire, three-week old open pollinated cv. Golden Delicious

text: Malus domestica

text: Leaves from Malus x domestica cv Golden delicious


MSMA-continuously flooded rhizosphere

text: Texas A&M University

text: live

text: Generic

characteristic: NCBI submission package

text: Bacterial 16S rRNA sequences obtained from continuously flooded rhizosphere soil with a history of monosodium methylarsenate application. Collected in August 2007 from Stuttgart, Arkansas.

text: uncultured bacterium

text: Arkansas rice rhizosphere 2007


name: MSMA-intermittently flooded rhizosphere soil

text: Texas A&M University

text: live

text: Generic

characteristic: SRA accession

text: Bacterial 16S rRNA sequences obtained from intermittently flooded rhizosphere soil with a history of monosodium methylarsenate application. Collected in August 2007 from Stuttgart, Arkansas.

text: uncultured bacterium

text: Arkansas rice rhizosphere 2007


name: Unammended, continuously flooded rhizosphere

text: Texas A&M University

text: live

text: Generic

text: Bacterial 16S rRNA sequences obtained from continuously flooded rhizosphere soil with no history of monosodium methylarsenate application. Collected in August 2007 from Stuttgart, Arkansas.

characteristic: description

text: uncultured bacterium

text: Arkansas rice rhizosphere 2007


name: Unammended, intermittently flooded rhizosphere

text: Texas A&M University

text: live

text: Generic

text: Bacterial 16S rRNA sequences obtained from intermittently flooded rhizosphere soil with no history of monosodium methylarsenate application. Collected in August 2007 from Stuttgart, Arkansas.

text: uncultured bacterium

text: Arkansas rice rhizosphere 2007


P. cubensis 454 run #1

text: Michigan State University

text: live

text: Generic

text: Genomic DNA sequence from Pseudoperonospora cubensis sporangia filtered for Cucumis sativus sequences.

text: Pseudoperonospora cubensis


short-term salt stress

text: Lanzhou University

text: live

text: Generic

text: Populus euphratica

text: 24 h NaCl-treated P. euphratica callus


long-term environmental stress

text: Lanzhou University

text: live

text: Generic

text: Populus euphratica

text: P. euphratica field-grown trees, including leaves, roots, flower buds, xylem, phloem


control

text: Lanzhou University

text: live

text: Generic

text: Populus euphratica

text: P. euphratica control callus


text: DOE-GEBA 2009

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Prodigal 1.4, GenePRIMP

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Nonsporulating

characteristic: Sporulation

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Vibrio-shaped

characteristic: cell shape

text: Japan: Nagano, Yumata

characteristic: country

text: Keywords: GSC:MIGS:2.1

text: Host

characteristic: environment

characteristic: investigation type

text: Terrestrial hot spring; Japan, Nagano, Yumata

characteristic: isolation site

text: terrestrial hot spring

characteristic: isolation-source

text: 36.829513 N 138.217163 E

characteristic: lat lon

text: Motile

characteristic: motility

text: 7.0 - 7.5

characteristic: ph

text: Calditerrivibrio nitroreducens Yu37-1, DSM 19672

characteristic: project name

text: DSM 19672, NBRC 101217

text: anaerobe

characteristic: secondary accessions

text: DSM 19672

characteristic: temperature optimum

text: Thermophile

characteristic: temperature range

text: Calditerrivibrio nitroreducens DSM 19672, complete genome.

text: type strain of Calditerrivibrio nitroreducens


Human

characteristic: External Id

text: University of Iowa

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

characteristic: organism

text: cerebellum-Humans

characteristic: title


Rhesus

text: University of Iowa

text: live

text: Generic

text: Macaca mulatta

text: cerebellum-RhesusMacaque


text: live

text: Generic

text: Pyrolobus fumarii DSM 11204

characteristic: description

text: Pyrolobus fumarii 1A

text: DSM 11204

characteristic: strain

text: Generic sample from Pyrolobus fumarii 1A


chimpanzee

text: University of Iowa

text: live

text: Generic

text: Pan troglodytes

text: cerebellum-Chimpanzee


text: DOE JGI

text: live

text: Generic

text: Candida albicans

text: C. albicans SC5314 grown in YPD media, sequenced with strand-specific RNA-Seq


text: DOE JGI

text: live

text: Generic

text: Candida albicans

text: C. albicans SC5314 grown in media containing serum, sequenced with strand-specific RNA-Seq


text: DOE-GEBA 2009

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Gram-

characteristic: Gram Staining

text: live

text: Generic

text: sample collected from 10-20 cm below the surface of the Sphagnum peat bog Bakchar

characteristic: Source of Isolate

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Russia

characteristic: country

text: Keywords: GSC:MIGS:2.1

text: Rice paddies

characteristic: environment

characteristic: investigation type

text: the acidic Sphagnum peat bog Bakchar, in western Siberia, Russia

characteristic: isolation site

characteristic: isolation-source

text: 56.51 N 82.5 E

characteristic: lat lon

text: Nonmotile

characteristic: motility

text: Mucilaginibacter paludis DSM 18603

text: 4.2 - 8.2

characteristic: ph

text: Mucilaginibacter paludis TPT56, DSM 18603

characteristic: project name

text: DSM 18603, ATCC BAA-1394, VKM B-2446

text: facultative

text: DSM 18603

text: Psychrotolerant

text: Generic sample from Mucilaginibacter paludis DSM 18603

text: heterotroph

text: type strain of Mucilaginibacter paludis

characteristic: type material


Blood Normalised

characteristic: External Id

text: Uppsala University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: This is a pooled normalised (Trimmer) cDNA sample prepared from RNA extracted from blood of two adult zebra finches from the captive Sheffield University study population.

characteristic: description

text: Taeniopygia guttata

characteristic: organism

text: blood

characteristic: tissue type

text: Zebra Finch Blood Normalised

characteristic: title


Bursa

text: Uppsala University

text: live

text: Generic

text: This is a pooled normalised (Trimmer) cDNA sample prepared from RNA extracted from bursa of Fabricius of four 18 day old zebra finche chicks from the captive Sheffield University study population.

text: Taeniopygia guttata

text: bursa

text: Zebra Finch Bursa Normalized


CD19 B

text: Center for Genomics and Bioinformatics, Indiana University

text: live

text: Generic

text: bisulfite treated sample of CD19 B cells

text: Homo sapiens

text: CD19 B-cells


text: DOE-CSP 2010

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Prodigal 1.4, GenePRIMP

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

text: live

text: isolated by M Svenning

characteristic: Isolation Comments

text: Generic

text: Nonsporulating

characteristic: Sporulation

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

characteristic: collection date

text: Svalbard

characteristic: country

characteristic: culture-collection

text: Soil

characteristic: environment

characteristic: investigation type

text: Artic wetland soil

characteristic: isolation site

text: arctic wetland soil

characteristic: isolation-source

text: 78.924 N 11.955 E

characteristic: lat lon

text: Nonmotile

characteristic: motility

text: Methylobacter tundripaludum SV96

text: Methylobacter tundripaludum SV96

text: DSM 17260, ATCC BAA-1195

text: aerobe

characteristic: strain

characteristic: temperature optimum

text: Mesophile

characteristic: temperature range

text: Generic sample from Methylobacter tundripaludum SV96

text: methylotroph

text: type strain of Methylobacter tundripaludum


characteristic: External Id

text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: mixed shoot tissues

text: Picea abies mixed shoots

characteristic: description

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Picea abies

characteristic: organism

text: Generic sample from Picea abies

characteristic: title


text: University of Michigan

text: live

text: Generic

text: Homo sapiens

text: HGMDFN090 fibroblast cell line


text: University of Michigan

text: live

text: Generic

text: Homo sapiens

text: hTert-immortalized version of HGMDFN090 fibroblast cell line


text: University of Michigan

text: live

text: Generic

text: Homo sapiens

text: aphidicolin treated subclone of HGMDFN090 fibroblast cell line


text: University of Michigan

text: live

text: Generic

text: Homo sapiens

text: aphidicolin-treated subclone of HGMDFN090 fibroblast cell line


text: Broad Institute

text: live

text: Generic

characteristic: bi gssr sample id

characteristic: bi gssr sample lsid

text: PCR Product

characteristic: bi gssr sample type

text: Human immunodeficiency virus 1

characteristic: sample id

text: Human immunodeficiency virus 1 PCR Product Sample 11275.0


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: lungs

characteristic: isolation source

text: mouse

characteristic: nat-host

text: Pneumocystis murina B123

characteristic: sample name

characteristic: strain

text: Generic sample from Pneumocystis murina B123


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: male

characteristic: host sex

text: Clostridium cadaveris CC44_001G

text: Clostridium cadaveris CC44_001G

text: Generic sample from Clostridium cadaveris CC44_001G


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

characteristic: bi gssr sample id

text: Genomic DNA

text: Human immunodeficiency virus 1

characteristic: organism

text: Plasma -- Human

characteristic: tissue source

text: Human immunodeficiency virus 1 Genomic DNA sample 17141.0

characteristic: title


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

characteristic: bi gssr sample lsid

text: Genomic DNA

characteristic: bi gssr sample type

text: Human immunodeficiency virus 1

characteristic: sample id

text: Plasma -- Human

text: Human immunodeficiency virus 1 Genomic DNA sample 17137.0


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Genomic DNA

text: Human immunodeficiency virus 1

text: Plasma -- Human

text: Human immunodeficiency virus 1 Genomic DNA sample 17138.0


text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Genomic DNA

text: Human immunodeficiency virus 1

text: Plasma -- Human

text: Human immunodeficiency virus 1 Genomic DNA sample 17144.0


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Genomic DNA

text: Human immunodeficiency virus 1

text: Plasma -- Human

text: Human immunodeficiency virus 1 Genomic DNA sample 17140.0


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: PCR Product

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1 PCR Product sample 12472.0


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Genomic DNA

text: Human immunodeficiency virus 1

text: Plasma -- Human

text: Human immunodeficiency virus 1 Genomic DNA sample 17135.0


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Genomic DNA

text: Human immunodeficiency virus 1

text: Plasma -- Human

text: Human immunodeficiency virus 1 Genomic DNA sample 17139.0


text: Broad Institute

text: live

text: Generic

text: Genomic DNA

text: Human immunodeficiency virus 1

text: Plasma -- Human

text: Human immunodeficiency virus 1 Genomic DNA sample 17143.0


text: Broad Institute

text: live

text: Generic

text: Genomic DNA

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1 Genomic DNA sample 17136.0


text: Broad Institute

text: live

text: Generic

text: PCR Product

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1 PCR Product sample 12473.0


text: Broad Institute

text: live

text: Generic

text: Genomic DNA

text: Human immunodeficiency virus 1

text: Plasma -- Human

text: Human immunodeficiency virus 1 Genomic DNA sample 17146.0


text: Broad Institute

text: live

text: Generic

text: Genomic DNA

text: Human immunodeficiency virus 1

text: Plasma -- Human

text: Human immunodeficiency virus 1 Genomic DNA sample 17142.0


text: Broad Institute

text: live

text: Generic

text: Genomic DNA

text: Human immunodeficiency virus 1

text: Plasma -- Human

text: Human immunodeficiency virus 1 Genomic DNA sample 17145.0


PRJNA28331.Clostridium glycolicum CC88H

text: Broad Institute

text: live

text: Generic

text: male

characteristic: host sex

text: Terrisporobacter glycolicus CC88H

text: Clostridium glycolicum CC88H

characteristic: sample name

characteristic: strain

text: Generic sample from Clostridium glycolicum CC88H


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

characteristic: bi gssr sample id

text: Genomic DNA

text: HCC1954 BL EVB-transformed lymphoblastoid

characteristic: cell line

text: Homo sapiens

characteristic: organism

text: Lot 6585408

text: Human Genomic DNA sample 11940.0


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Genomic DNA

text: HCC1143 BL EBV-transformed lymphoblastoid

text: Homo sapiens

text: Lot 2435994

text: Human Genomic DNA sample 11935.0

characteristic: title


text: Broad Institute

text: live

text: Generic

characteristic: bi gssr sample lsid

text: Genomic DNA

characteristic: bi gssr sample type

text: Homo sapiens

text: Lung

characteristic: tissue source

text: Human Genomic DNA Sample 13398.0


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Genomic DNA

text: HCC1954 Breast Carcinoma

text: Homo sapiens

text: Lot 2435989

characteristic: sample id

text: Human Genomic DNA sample 11937.0


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: biovar

text: Brucella abortus bv. 2 str. 86/8/59

text: str. 86/8/59

text: Generic sample from Brucella abortus bv. 2 str. 86/8/59


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Brucella abortus bv. 3 str. Tulya

characteristic: sample name

text: str. Tulya

characteristic: strain

text: Generic sample from Brucella abortus bv. 3 str. Tulya


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Brucella abortus bv. 4 str. 292

characteristic: organism

text: str. 292

text: Generic sample from Brucella abortus bv. 4 str. 292


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Brucella abortus bv. 5 str. B3196

text: str. B3196

text: Generic sample from Brucella abortus bv. 5 str. B3196

characteristic: title


text: Broad Institute

text: live

text: Generic

characteristic: bi gssr sample id

characteristic: bi gssr sample lsid

text: Genomic DNA

characteristic: bi gssr sample type

text: Brucella abortus bv. 6 str. 870

text: str. 870

text: Brucella abortus bv. 6 str. 870 Genomic DNA sample 24608.0


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Brucella melitensis bv. 1 str. Rev.1

text: str. Rev.1

text: Generic sample from Brucella melitensis bv. 1 str. Rev.1


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Brucella abortus bv. 9 str. C68

text: str. C68

text: Generic sample from Brucella abortus bv. 9 str. C68


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Brucella melitensis bv. 3 str. Ether

text: str. Ether

text: Generic sample from Brucella melitensis bv. 3 str. Ether


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Brucella ceti B1/94

text: Generic sample from Brucella ceti B1/94

text: type strain of Brucella ceti

characteristic: type material


name: PRJNA28331.Streptococcus intermedius ATCC 27335

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Genomic DNA

text: Brucella ceti M490/95/1

characteristic: sample id

text: Brucella ceti M490/95/1 Genomic DNA sample 24612.0


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Brucella neotomae 5K33

characteristic: sample name

text: Generic sample from Brucella neotomae 5K33

text: type strain of Brucella neotomae


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Streptomyces sp. SPB074

characteristic: strain

text: Generic sample from Streptomyces sp. SPB74


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

characteristic: organism

text: ATCC 25486

text: Generic sample from Streptomyces pristinaespiralis ATCC 25486


text: Broad Institute

text: live

text: Generic

text: Brucella pinnipedialis B2/94

text: Generic sample from Brucella pinnipedialis B2/94

characteristic: title


name: PRJNA73477.Fusobacterium nucleatum 7_1 phage extraction 2

text: Broad Institute

text: live

text: Generic

text: Fusobacterium nucleatum

text: Generic sample from Fusobacterium nucleatum


text: Broad Institute

text: live

text: Generic

characteristic: biovar

text: Brucella suis bv. 3 str. 686

text: str. 686

text: Generic sample from Brucella suis bv. 3 str. 686


text: Broad Institute

text: live

text: Generic

text: Streptomyces filamentosus NRRL 11379

text: NRRL 11379

text: Generic sample from Streptomyces roseosporus NRRL 11379


text: Broad Institute

text: live

text: Generic

text: Streptomyces lividans TK24

text: Generic sample from Streptomyces lividans TK24


text: Broad Institute

text: live

text: Generic

characteristic: bi gssr sample id

characteristic: bi gssr sample lsid

text: Genomic DNA

characteristic: bi gssr sample type

text: Brucella ceti M13/05/1

text: Brucella ceti M13/05/1 Genomic DNA sample 24611.0


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Enterococcus faecalis T1

text: Generic sample from Enterococcus faecalis T1


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Enterococcus faecalis T2

text: Generic sample from Enterococcus faecalis T2


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Enterococcus faecalis T3

text: Generic sample from Enterococcus faecalis T3


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Enterococcus faecalis T8

text: Generic sample from Enterococcus faecalis T8


text: Broad Institute

text: live

text: Generic

text: Enterococcus faecalis T11

characteristic: sample name

text: Generic sample from Enterococcus faecalis T11


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Enterococcus faecalis X98

text: Generic sample from Enterococcus faecalis X98


text: Broad Institute

text: live

text: Generic

text: Enterococcus faecalis CH188

characteristic: strain

text: Generic sample from Enterococcus faecalis CH188


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Enterococcus faecalis Merz96

text: Generic sample from Enterococcus faecalis Merz96


text: Broad Institute

text: live

text: Generic

text: Enterococcus faecalis HIP11704

characteristic: organism

text: Generic sample from Enterococcus faecalis HIP11704


text: Broad Institute

text: live

text: Generic

text: Enterococcus faecalis E1Sol

text: Generic sample from Enterococcus faecalis E1Sol

characteristic: title


text: Broad Institute

text: live

text: Generic

text: Enterococcus faecalis JH1

text: Generic sample from Enterococcus faecalis JH1


text: Broad Institute

text: live

text: Generic

text: Enterococcus faecalis Fly1

text: Generic sample from Enterococcus faecalis Fly1


text: Broad Institute

text: live

text: Generic

text: Enterococcus faecalis D6

text: Generic sample from Enterococcus faecalis D6


text: Broad Institute

text: live

text: Generic

text: Enterococcus faecium Com12

text: Generic sample from Enterococcus faecium Com12


text: Broad Institute

text: live

text: Generic

text: Enterococcus faecium Com15

text: Generic sample from Enterococcus faecium Com15


text: Broad Institute

text: live

text: Generic

text: Genomic DNA

text: Brucella pinnipedialis M163/99/10

characteristic: sample id

text: Brucella pinnipedialis M163/99/10 Genomic DNA sample 24619.0


text: Broad Institute

text: live

text: Generic

characteristic: bi gssr sample id

text: Genomic DNA

characteristic: biovar

text: Brucella melitensis bv. 1 str. 63/43

text: str. 63/43

text: Brucella melitensis bv. 1 str. 63/43 Genomic DNA sample 24631.0


text: Broad Institute

text: live

text: Generic

characteristic: bi gssr sample lsid

text: Genomic DNA

characteristic: bi gssr sample type

text: str. F3/05-371

text: Brucella melitensis bv. 1 str. F3/05-371 Genomic DNA sample 24644.0