text: live

text: Generic

text: fish metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample FGCM as a template; intestinal mucus samples were collected from 3 fish and pooled together

text: fish_related environments_microbiome: FGCM


status: PUBLIC

characteristic: External Id

text: Fish diseases, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: freshwater sediment metagenome

characteristic: organism

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample CSLDN as a template; surface sediment samples were collected from 3 locations of the same pond and pooled together

tag: attribute

characteristic: sample comment

characteristic: sample name

text: fish_related environments_microbiome: CSLDN

characteristic: title


text: live

text: Generic

text: fish metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample FGCC1 as a template; intestinal sample was collected from 1 fish

text: fish_related environments_microbiome: FGCC1


text: live

text: Generic

text: fish metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample JYNa2 as a template; intestinal sample was collected from 1 fish

text: fish_related environments_microbiome: JYNa2


text: live

text: Generic

text: fish metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample JYNb3 as a template; intestinal sample was collected from 1 fish

text: fish_related environments_microbiome: JYNb3


text: live

text: Generic

text: freshwater metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample CSLW as a template; surface water samples were collected from 3 locations of the same pond and pooled together

text: fish_related environments_microbiome: CSLW


text: live

text: Generic

text: fish metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample FGCC3 as a template; intestinal sample was collected from 1 fish

text: fish_related environments_microbiome: FGCC3


text: live

text: Generic

text: fish metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample JYNb2 as a template; intestinal sample was collected from 1 fish

text: fish_related environments_microbiome: JYNb2


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells transfected with RRP46-1 siRNA were incubated for 8 hours in the absence of BrU (chasing), followed by isolation of BrU-RNA by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: Rrp 8h


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

characteristic: cell line name

text: myoblast

characteristic: cell type

text: Mus musculus

characteristic: strain

text: muscle

characteristic: tissue type


characteristic: External Id

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: non-immunoprecipitated sample. ChIP_seq library. Human Beas2b IL-4 non-stimulation cell line.


text: Ito Laboratory, Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Neurospora crassa OR74A

text: Genomic DNA extracted from logarithmically growing N. crassa strain 74-OR-23-IVA (FGSC2489).

text: FGSC 2489

text: Genomic DNA from wild type strain of N. crassa


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: ecotype

text: Arabidopsis thaliana

text: Genomic DNA extracted from Col-0 seedlings.

text: Genomic DNA from wild type strain of A. thaliana


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Homo sapiens


text: Ogura Laboratory, Academic Production, Ochanomizu University

text: live

text: Generic

characteristic: SRA accession

text: Nautilus pompilius

characteristic: organism

text: Nautilus is a chambered cephalopod group and known as a living fossil. A specimen of Nautilus pompilius was purchased from a retail aquarium in Kanagawa, Japan.

characteristic: sample comment

text: Whole genome shotgun sequencing of Nautilus pompilius


text: live

text: Generic

text: Japanese scallop

characteristic: common name

text: Mizuhopecten yessoensis

text: A specimen of the Japanese scallop, Mizuhopecten (Patinopecten) yessoensis, was purchased from the Tokyo Central Wholesale Fish Market (caught in Aomori).

characteristic: sample name

text: Whole genome shotgun sequencing of Japanese scallop, Mizuhopecten (Patinopecten) yessoensis

characteristic: title


text: live

text: Generic

text: Japanese pygmy squid

text: Idiosepius paradoxus

text: The pygmy squid has the smallest known genome of all cephalopods. The squid specimen was collected in the Chita bay, central Honsyu, Japan.

text: Whole genome shotgun sequencing of Pygmy squid, Idiosepius paradoxus


text: live

text: Generic

text: Homo sapiens

text: source: lung epithelial cells non-stimulated with IL-4; description: Oligo capped transcriptional start site library.


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: source: TIG-3; description: chip_seq library.


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

text: Generic

text: Mus musculus

text: mouse EB5 cell lines medium condition:rLIF(+) 1% formaldehyde 5min. fixation immunoprecipitated anti-CHD2 moAb

characteristic: strain


characteristic: External Id

text: live

text: Generic

text: Mus musculus

text: mouse EB5 cell lines medium condition:rLIF(+) 1% formaldehyde 5min. fixation input sample


text: live

text: Generic

characteristic: cell line

text: Homo sapiens


characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: none provided


text: Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University

characteristic: INSDC first public

text: live

text: Generic

text: Plasmodium cynomolgi ATCC 30046

text: DNA sample of Plasmodium cynomolgi ATCC 30046 (Cambodian strain).

text: ATCC 30046

text: Plasmodium cynomolgi ATCC 30046 (Cambodian strain) DNA


text: >25 NK1

characteristic: CACGGCT

text: >25 NP3

characteristic: CCGAGAG

text: >25 NP2

characteristic: GACGGAG

text: >25 NK3

characteristic: GAGTGCT

text: Soil biology and biochemistry, Institute of Soil Science, Chinese Academy of Sciences

characteristic: INSDC last update

text: live

text: Generic

text: >25 NK2

characteristic: TCGAGCT

text: >25 NP1

characteristic: TGCAGAG

text: uncultured fungus

text: The long-term field fertilizer experiment was conducted at Fengqiu Agro-ecological Experimental Station, Chinese Academy of Sciences, Fengqiu County, Henan Province, China (35Â°00’N, 114Â°24’E). The soil, a typical soil in the North China region with a profile of sandy loam (about 9% clay, 21.8% silt) and classified as aquic inceptisol (a calcareous fluvo-aquic soil). The treatments were: (1) NP applied as urea and superphosphate, no potassium sulphate; (2) NK applied as urea and potassium sulphate, no superphosphate. Each plot had received the same fertilizer management since 1989.

text: NP and NK samples


text: >1 control2

text: >1 NPK2

text: >1 OM1

characteristic: CGATGAG

text: >1 control1

text: >1 OM3

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: >1 control3

characteristic: TCAGGTC

text: >1 NPK3

text: >1 OM2

characteristic: TGATGCT

text: >1 NPK1

text: uncultured fungus

characteristic: organism

text: The long-term field fertilizer experiment was conducted at Fengqiu Agro-ecological Experimental Station, Chinese Academy of Sciences, Fengqiu County, Henan Province, China (35Â°00’N, 114Â°24’E). The soil, a typical soil in the North China region with a profile of sandy loam (about 9% clay, 21.8% silt) and classified as aquic inceptisol (a calcareous fluvo-aquic soil). The treatments were: (1) NPK applied as urea, superphosphate, and potassium sulphate, respectively; (2) Organic manure (OM, i.e., total N at the same rate as in the NPK treatment, but from compost plus chemical P and K fertilizers as in the NPK treatment); (3) Control, i.e., no fertilizer. Each plot had received the same fertilizer management since 1989.

text: OM, NPK and Control samples


characteristic: External Id

text: Tree Genetics Laboratory, Department of Forest Genetics, Forestry and Forest Products Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Cryptomeria japonica

text: Total mRNA from seedlings

characteristic: sample comment

characteristic: sample name

text: Total mRNA from seedlings

characteristic: title


characteristic: INSDC last update

text: live

text: Generic

characteristic: notes

text: Homo sapiens

text: source: Clonetech Heart; description: Oligo capped transcriptional start site library.


text: live

text: Generic

characteristic: cell line

text: Mus musculus


text: Laboratory of Insect Genetics and Biosciences, Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, University of Tokyo

characteristic: INSDC secondary accession

text: live

text: Generic

text: BmN4 cultured cells

characteristic: cell type

text: Bombyx mori

text: piRNAs, ranging from 23-30 nucleotides, were easily gel-purified as piRNAs could be visualized simply by SYBRGold staining.

text: piRNAs from GFP-silenced line #2.


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: BmN4 cultured cells

text: Bombyx mori

text: piRNAs from GFP-silenced line #3.


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: BmN4 cultured cells

text: Bombyx mori

text: piRNAs from GFP-silenced line #1.


text: live

text: Generic

text: Homo sapiens

text: source: DLD-1; description: chip_seq library.


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

text: Homo sapiens

text: total RNA prepared from HeLa cells

text: HeLa total RNA


text: live

text: Generic

text: Homo sapiens

text: total RNA prepared from THP-1 cells

text: THP-1 total RNA


text: Environmental Biotechnology, Environmental Engineering, Ewha Womans University

text: live

text: Generic

text: biofilm metagenome

text: replicate 2:Methane removal biofilter with pumice and GAC


text: live

text: Generic

text: biofilm metagenome

text: replicate 3:Methane removal biofilter with pumice and GAC 3


text: live

text: Generic

text: biofilm metagenome

text: replicate 1:Methane removal biofilter with pumice and GAC 1


text: live

text: Generic

text: biofilm metagenome

text: replicate 4:Methane removal biofilter with pumice and GAC 4

text: Biofilter_rep 4


text: Kumazawa LaboratorDepartment of Information and Basic Science, Graduate School of Natural Sciences, Nagoya City Universityy, Department of Information and Biological Sciences, Graduate School of Natural Sciences, Nagoya City University

text: live

text: Generic

text: Anolis carolinensis

text: An individual of the green anole lizard (Anolis carolinensis) was obtained from a local petshop. Total DNA was extracted from leg muscle.

text: Anolis carolinensis genomic DNA


text: Agrogenomics Research Center, National Institute of Agrobiological Sciences

text: live

text: Generic

text: Koshihikari

characteristic: cultivar

text: Oryza sativa Japonica Group


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: source: MCF7; description: chip_seq library.


characteristic: External Id

text: live

text: Generic

text: Homo sapiens


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

characteristic: INSDC center name

text: live

text: Generic

text: Bacillus anthracis

text: BA103 isolated from bovine in Japan in 1991

characteristic: strain


text: Nekrutenko Laboratory, Center for Comparative Genomics and Bioinformatics, Pennsylvania State University

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: Family 11, M15C2 amplicons

characteristic: sample comment


text: live

text: Generic

text: Homo sapiens

text: Family 7, M10C2 amplicons

characteristic: sample name

characteristic: title


characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: Family 4, M5G amplicons


text: live

text: Generic

text: Homo sapiens

text: Family 4, M9 amplicons


text: live

text: Generic

text: Homo sapiens

text: Family 4, M4C3 amplicons


text: live

text: Generic

text: Homo sapiens

text: Family 7, M10 amplicons


text: live

text: Generic

text: Homo sapiens

text: Family 11, M15 amplicons


text: live

text: Generic

text: Homo sapiens

text: Family 4, M4 amplicons


text: live

text: Generic

text: Homo sapiens

text: Mix of samples M4 and M10C1


text: live

text: Generic

text: Homo sapiens

text: Family 7, M10C1 amplicons


text: live

text: Generic

text: Homo sapiens

text: Family 4, M4C1 amplicons


text: live

text: Generic

text: Homo sapiens

text: Family 11, M15C1 amplicons


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

text: Generic

text: myotube cells

text: Mus musculus

text: source: C2C12 cells


text: live

text: Generic

text: myoblast cells

text: Mus musculus

text: source: C2C12 cells


text: Laboratory of Plant Genes, Department of Plant Genome Research, Kazusa DNA Research Institute

text: live

text: Generic

text: Jatropha curcas

text: Sequencing of jatropha callus cDNA

text: jatropha callus cDNA


text: live

text: Generic

characteristic: cell line

text: Homo sapiens


characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens


text: Genome Research Center, Korea Research Institute of Bioscience and Biotechnology

text: live

text: Generic

text: Canis lupus familiaris

text: Whole Genome Sequencing of Jindo Dog with HiSeq 2000.

text: familiaris

characteristic: sub species

text: Whole Genome Sequencing of Jindo Dog.


text: Plant Genetics, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University

text: live

characteristic: INSDC status

text: Generic

text: soil metagenome

text: soil microbe DNAs extracted from tropical forests in Sarawak and a temperate forest in Japan


text: live

text: Generic

characteristic: NCBI submission model

text: soil metagenome

text: soil microbe DNA


text: Laroche, Lethbridge Research Center, Agriculture and Agri-Food Canada

text: live

text: Generic

characteristic: NCBI submission package

text: Secale cereale

text: Total mRNA from rye seedling with salt stress


text: live

text: Generic

characteristic: SRA accession

text: Secale cereale

text: Total mRNA from rye root

text: Total mRNA from rye root


text: live

text: Generic

text: Secale cereale

text: Total mRNA from rye stem

text: Total mRNA from rye stem


text: live

text: Generic

text: Secale cereale

text: Total mRNA from rye crown

text: Total mRNA from crown


text: live

text: Generic

text: Secale cereale

text: Total mRNA from rye pistil

text: Total mRNA from rye pistil


text: live

text: Generic

text: Secale cereale

text: Total mRNA from rye head

text: Total mRNA from rye head


text: live

text: Generic

text: Secale cereale

text: Total mRNA from rye seedling

text: Total mRNA from rye seedling


text: live

text: Generic

text: Secale cereale

text: Total mRNA from rye anther

text: Total mRNA from rye anther


text: 48 hours after Negative control KD

text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

text: monocyte

characteristic: cell type

text: 1 year old

characteristic: dev stage

text: Homo sapiens

text: NC mediated knockdown followed up by CAGE

text: peripheral blood

characteristic: tissue type

text: Negative control knockdown


text: 48 hours after MYB KD

characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: monocyte

text: 1 year old

text: Homo sapiens

characteristic: organism

text: MYB siRNA mediated knockdown followed up by CAGE

text: peripheral blood

text: MYB knockdown


text: 48 hours after SP1 KD

characteristic: INSDC first public

text: live

text: Generic

text: monocyte

text: 1 year old

text: Homo sapiens

text: SP1 siRNA mediated knockdown followed up by CAGE

characteristic: sample comment

text: peripheral blood

text: SP1 knockdown


text: 48 hours after PU.1 KD

text: live

text: Generic

text: monocyte

text: 1 year old

text: Homo sapiens

text: PU.1 siRNA mediated knockdown followed up by CAGE

characteristic: sample name

text: peripheral blood

text: PU.1 knockdown

characteristic: title


characteristic: INSDC last update

text: live

text: Generic

text: THP-1, monocyte

text: 1 year old

text: Homo sapiens

text: default sampel reference

text: peripheral blood

text: HIC-HIG


text: 48 hours after IRF8 KD

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: cell line

text: monocyte

text: 1 year old

text: Homo sapiens

text: IRF8 siRNA mediated knockdown followed up by CAGE

text: peripheral blood

text: IRF8 knockdown


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus


text: Department of Bioscience, Faculty of Applied Bioscience, Tokyo Univetsity of Agriculture

text: live

text: Generic

characteristic: NCBI submission model

text: Japanese rice

characteristic: common name

text: OMACHI

characteristic: cultivar

text: Oryza sativa Japonica Group

text: japonica rice cultivar Omachi

text: Rice genome


text: Laboratory of Genome Science, Graduate School of Marine Science and Technology, Tokyo University of Marine Science and Technology

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Oncorhynchus mykiss

text: Adipose tissue from large fish (total length, 29.3 cm) was used.

text: Rainbow trout adipose


text: Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences, The University of Tokyo

text: live

text: Generic

text: Toxoplasma gondii type II

text: BKI resistant T. gondii clone 1. PLK/DUAL was constructed by Unno et. al. (Parasitology. 2009 May;136(6):579-88.) from PLK/hxgprt- clone. PLK strain is genotype II T. gondii established by L H Kasper et. al. (J Clin Invest. 1985; 75(5):1570-1577) from M-47 line of T. gondii.

text: P/D res.1


text: live

text: Generic

text: Toxoplasma gondii type II

text: BKI resistant T. gondii clone 2. PLK/DUAL was constructed by Unno et. al. (Parasitology. 2009 May;136(6):579-88.) from PLK/hxgprt- clone. PLK strain is genotype II T. gondii established by L H Kasper et. al. (J Clin Invest. 1985; 75(5):1570-1577) from M-47 line of T. gondii.

text: P/D res.2


text: live

text: Generic

text: Toxoplasma gondii

text: Parent strain for establishing BKI resistant T. gondii clones. PLK/DUAL was constructed by Unno et. al. (Parasitology. 2009 May;136(6):579-88.) from PLK/hxgprt- clone. PLK strain is genotype II T. gondii established by L H Kasper et. al. (J Clin Invest. 1985; 75(5):1570-1577) from M-47 line of T. gondii.

text: PLK/DUAL


text: Laboratory of Ecogenetics, Environmental Biology Division, National Institute for Environmental Studies

text: live

text: Generic

characteristic: collection date

text: 35.50 N 138.69 E

characteristic: lat lon

text: Botryococcus braunii

text: This strain of Botryococcus braunii, isolated from Lake Saiko in Yamanashi, Japan on September 24th, 2004, produces liquid hydrocarbons derived from very long-chain fatty acids.

characteristic: strain

text: Botryococcus braunii (strain BOT88-2)


characteristic: External Id

text: Bioinformatics Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences

characteristic: INSDC center name

text: live

text: Generic

text: Nipponbare

text: Oryza sativa Japonica Group

characteristic: organism

text: Total mRNA from shoot of rice (Oryza sativa ssp. Japonica cv. Nipponbare) seedling

text: shoot

characteristic: tissue


characteristic: INSDC first public

text: live

text: Generic

text: Nipponbare

text: Oryza sativa Japonica Group

text: Total mRNA from root of rice (Oryza sativa ssp. Japonica cv. Nipponbare) seedling

characteristic: sample comment

characteristic: sample name

text: root

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus


text: live

text: Generic

characteristic: NCBI submission model

characteristic: cell line

text: Homo sapiens


text: Genetics and Genomics, Iwate Biotechnology Research Center

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: rice

characteristic: common name

text: Nipponbare

characteristic: cultivar

text: Oryza sativa Japonica Group

text: fresh leaves from aseptically germinated plants

text: rice Nipponbare


characteristic: External Id

text: Genetic Strain Stock Center, Plant Genetics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Oryza sativa Japonica Group

text: Rice SC (synergid cell) RNA

text: Rice Transcriptome Multiplex-1_SC


characteristic: INSDC center name

text: live

text: Generic

text: Oryza sativa Japonica Group

text: Rice EC (egg cell) RNA

text: Rice Transcriptome Multiplex-1_EC


text: live

text: Generic

text: Oryza sativa Japonica Group

characteristic: organism

text: Rice AP (antipodals) RNA

text: Rice Transcriptome Multiplex-1_AP


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Rice CC (central cell) RNA

text: Rice Transcriptome Multiplex-1_CC


text: live

text: Generic

text: Ramos

text: Homo sapiens

text: non-immunoprecipitated sample. ChIP_seq library. Human Ramos IL-4 stimulation cell line.


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens


text: Strain isolation

characteristic: Akira Hishinuma

text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

text: live

text: Genome analysis

characteristic: Makoto Ohnishi

text: Generic

text: Antimicrobial testing

characteristic: Yoshichika Arakawa

text: Escherichia coli NDM1Dok01

text: Whole genome analysis of the first reported NDM-1-producing E. coli (NDM-1 Dok01) in Japan.


text: Strain isolation

characteristic: INSDC first public

text: live

text: Genome analysis

text: Generic

text: Antimicrobial testing

text: Escherichia coli NDM1Dok01

text: Plasmids prepared from NDM-1 producing E. coli (NDM-1Dok01) were electroporated into E. coli DH10B strain, follwed by selection of carbapenem to isolate the DH10B strain harboring NDM-1a plasmid. Whole genome analysis of the DH10B strain harboring NDM-1a plasmid of E. coli (NDM-1Dok01).

characteristic: sample comment

characteristic: sample name


text: Microbial ecology Laboratory, Graduate School of Biology, Kyung Hee University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: human gut metagenome

text: In this study, we investigated the overall composition of the gut microbiota and its host specificity and temporal stability in 20 Koreans using 454-pyrosequencing with barcoded primers targeting the V1 to V3 region of the bacterial 16S rRNA gene.

text: Korean gut microbiota Sample Q Reverse

characteristic: title


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: human gut metagenome

text: Korean gut microbiota Sample H0 Forward


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: human gut metagenome

text: Korean gut microbiota Sample D0 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample N Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample F1 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample C1 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample D2 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample E2 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample C1 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample R Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample G1 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample H1 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample F2 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample B2 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample J Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample G0 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample E2 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample A0 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample I Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample D1 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample H2 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample A1 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample B2 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample T Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample F0 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample M Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample E1 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample E1 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample E0 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample J Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample S Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample I Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample N Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample P Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample E0 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample B1 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample C2 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample Q Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample B0 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample F2 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample M Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample G1 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample K Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample B1 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample D1 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample G0 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample G2 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample A2 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample B0 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample D0 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample A0 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample C0 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample T Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample S Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample H1 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample H0 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample A2 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample A1 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample C2 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample C0 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample L Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample L Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample G2 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample O Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample F1 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample P Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample O Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample R Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample K Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample F0 Forward


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample D2 Reverse


text: live

text: Generic

text: human gut metagenome

text: Korean gut microbiota Sample H2 Forward


text: live

text: Generic

text: Homo sapiens


text: Laboratory of Functional Biology, Faculty of Pharmaceutical Sciences at Kagawa Campus, Tokushima Bunri University

text: live

text: Generic

text: Lymnaea stagnalis

text: The central nervous system of Lymnaea stagnalis after conditioned taste aversion learning.

text: The central nervous system of mollusc


text: live

text: Generic

text: Homo sapiens

text: source: lung epithelial cells stimulated with IL-4; description: Oligo capped transcriptional start site library.


text: live

text: Generic

text: Ramos

characteristic: cell line

text: Homo sapiens

text: Binding site : H3K4me3. ChIP_seq library. Human Ramos cell line.


characteristic: External Id

text: Fungal Genomics Laboratory, Center for Integrated Fungal Research, Department of Plant Pathology, North Carolina State University

text: live

text: Generic

text: Rice blast fungus

characteristic: common name

text: Pyricularia oryzae 70-15

text: Total RNA was extracted from mycelia tissue grown 3 days in yeast extract (0.2% w/v) and sucrose (1.0% w/v) liquid medium and small RNAs were fractionated in 15% polyacrylamide gel.

text: Magnaporthe oryzae mycelia small RNAs


characteristic: INSDC center name

text: live

text: Generic

text: Rice blast Fungus

text: Pyricularia oryzae 70-15

characteristic: organism

text: Total RNA was extracted 16 hours after appressoria induction in hydrophobic surface and small RNAs were fractionated in 15% polyacrylamide gel.

text: Magnaporthe oryzae appressoria small RNAs


text: Department of Oral and Maxillofacial Surgery 2, Graduate School of Dentistry, Osaka University

text: live

text: Generic

text: Human alphaherpesvirus 1 strain RH2

text: Human herpesvirus 1 strain RH2

characteristic: strain

text: Human herpesvirus 1 strain RH2


text: Laboratory of Animal Breeding and Genetics, Graduate School of Agriculture, Kyoto University

text: live

text: Generic

text: Nipponia nippon

text: Japanese crested ibis (founder A). Blood sample of the Japanese Crested Ibis were provided from Sado Japanese Crested Ibis Conservation Center.

text: Ip390_Japanese crested ibis (founder A)


text: live

text: Generic

text: Nipponia nippon

text: Japanese crested ibis (founder B). Blood sample of the Japanese Crested Ibis were provided from Sado Japanese Crested Ibis Conservation Center.

text: Ip391_Japanese crested ibis (founder B)


text: live

text: Generic

text: Nipponia nippon

text: Japanese crested ibis (founder C). Blood sample of the Japanese Crested Ibis were provided from Sado Japanese Crested Ibis Conservation Center.

text: Ip392_Japanese crested ibis (founder C)


text: live

text: Generic

text: Nipponia nippon

text: Japanese crested ibis (founder D). Blood sample of the Japanese Crested Ibis were provided from Sado Japanese Crested Ibis Conservation Center.

text: Ip393_Japanese crested ibis (founder D)


text: live

text: Generic

text: Nipponia nippon

text: Japanese crested ibis (founder E). Blood sample of the Japanese Crested Ibis were provided from Sado Japanese Crested Ibis Conservation Center.

text: Ip394_Japanese crested ibis (founder E)


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens


text: Laboratory of Plant Genes, Department of Plant Genome Research, Kazusa DNA Research Institute

text: live

text: Generic

characteristic: isolate

text: Eucalyptus camaldulensis

text: 454 paired-end sequencing of Eucalyptus camaldulensis


characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus


text: Traditional Food Research Group, Korea Food Research Institute

text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample2

characteristic: sample comment


text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample6

characteristic: sample name


characteristic: INSDC last update

text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample13


characteristic: INSDC secondary accession

text: live

text: Generic

text: food fermentation metagenome

text: Pyrosequences of bacterial 16S rDNA genes

text: Bacterial community of chinese soybean pastes


text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample12

characteristic: title


text: live

characteristic: INSDC status

text: Generic

text: food metagenome

text: chinese soybean paste sample14


text: live

text: Generic

characteristic: NCBI submission model

text: food metagenome

text: chinese soybean paste sample8


text: live

text: Generic

characteristic: NCBI submission package

text: food metagenome

text: chinese soybean paste sample9


text: live

text: Generic

characteristic: SRA accession

text: food metagenome

text: chinese soybean paste sample7


text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample11


text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample1


text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample4


text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample5


text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample3


text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample16


text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample15


text: live

text: Generic

text: food metagenome

text: chinese soybean paste sample10


text: Cellular Molecular Biology, Translational Medicine, Graduate School of Medicine, Chiba University

text: live

text: Generic

text: Mus musculus

text: MLL-AF9 induced AML Ezh2 knockout (input)

text: chiba iwama TP3 4 input


text: live

text: Generic

text: Ramos

characteristic: cell line

text: Homo sapiens

text: non-immunoprecipitated sample. ChIP_seq library. Human Ramos IL-4 stimulation cell line.


characteristic: External Id

text: Division of Experimental Immunology, Institute for Genome Research, The University of Tokushima

text: live

text: Generic

text: Mus musculus

text: Naive CD8+ T cells from beta5t+/- mice

text: Naive CD8+ T cells from beta5t+/- mice


text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: microbial mat metagenome


text: Kumazawa LaboratorDepartment of Information and Basic Science, Graduate School of Natural Sciences, Nagoya City Universityy, Department of Information and Biological Sciences, Graduate School of Natural Sciences, Nagoya City University

text: live

text: Generic

text: Japanese four-lined ratsnake

characteristic: common name

text: Elaphe quadrivirgata

text: An individual of the Japanese four-lined ratsnake (Elaphe quadrivirgata) was caught in the wild. Total DNA was extracted from blood.

text: Elaphe quadrivirgata genomic DNA


text: Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences

characteristic: INSDC center name

text: live

text: Generic

text: Rice

text: Oryza sativa Japonica Group

text: Regenerated plants (M4 generation) from cultured cells of rice


text: live

text: Generic

text: Homo sapiens

characteristic: organism


text: live

text: Generic

text: food metagenome

text: doenjang sample5


text: live

text: Generic

text: food metagenome

text: cheonggukjang sample6


text: live

text: Generic

text: food metagenome

text: doenjang sample reference2


text: live

text: Generic

text: food metagenome

text: doenjang sample4


text: live

text: Generic

text: food metagenome

text: doenjang sample7


text: live

text: Generic

text: food metagenome

text: kochujang sample4


text: live

text: Generic

text: food metagenome

text: kochujang sample2


text: live

text: Generic

text: food metagenome

text: doenjang sample6


text: live

text: Generic

text: food metagenome

text: doenjang sample2


text: live

text: Generic

text: food metagenome

text: cheonggukjang sample8


text: live

text: Generic

text: food metagenome

text: kochujang sample3


text: live

text: Generic

text: food metagenome

text: doenjang sample1


text: live

text: Generic

text: food metagenome

text: kochujang sample9


text: live

text: Generic

text: food metagenome

text: doenjang sample3


text: live

text: Generic

text: food metagenome

text: cheonggukjang sample reference 1


text: live

text: Generic

text: food metagenome

text: cheonggukjang sample4


text: live

text: Generic

text: food metagenome

text: cheonggukjang sample5


text: live

text: Generic

text: food metagenome

text: kochujang sample reference2


text: live

text: Generic

text: food metagenome

text: kochujang sample reference1


text: live

text: Generic

text: food metagenome

text: doenjang sample9


text: live

text: Generic

text: food metagenome

text: kochujang sample1


text: live

text: Generic

text: food metagenome

text: kochujang sample7


text: live

text: Generic

text: food metagenome

text: cheonggukjang sample7


text: live

text: Generic

text: food metagenome

text: doenjang sample reference1


text: live

text: Generic

text: food metagenome

text: kochujang sample8


text: live

text: Generic

text: food metagenome

text: Bacterial community of Korean traditional fermented foods


text: live

text: Generic

text: food metagenome

text: kochujang sample5


text: live

text: Generic

text: food metagenome

text: doenjang sample8


text: live

text: Generic

text: food metagenome

text: kochujang sample6


text: live

text: Generic

text: food metagenome

text: cheonggukjang sample1


text: live

text: Generic

text: food metagenome

text: cheonggukjang sample3


text: live

text: Generic

text: food metagenome

text: cheonggukjang sample2


text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: Mus musculus


text: Environmental Biotechnology, Environmental Engineering, Ewha Womans University

text: live

text: Generic

text: biofilm metagenome

text: biofilter metagenomic libraries 1-1 and 4-2

text: Effects of Non-Methane Volatile Organic Compounds on Performance and Microbial Community of Methanotrophic Biofilter


text: Molecular Genetic Lab, Neurology, Internal Medicine, School of Medicine, Jichi Medical University

text: live

text: Generic

text: Homo sapiens

text: genomic DNA from peripheral bood leukocytes in a patient with autosomal recessive spastic paraplegia with optic atrophy and neuropathy


text: Genetic Strain Stock Center, Plant Genetics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

characteristic: WILD RICE DB

text: Oryza officinalis

text: Wild rice (CC type)

text: O. officinalis


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: non-immunoprecipitated sample. ChIP_seq library. Human Beas2b IL-4 non-stimulation cell line.


text: Department of Bioscience, Faculty of Applied Bioscience, Tokyo Univetsity of Agriculture

text: live

text: Generic

text: Embryonic stem (ES) cell

text: Mus musculus

text: Embryonic stem cell (ESC) lines were derived from C57BL/6J Jcl mice (Clea Japan, Tokyo, Japan).

text: C57BL/6J Jcl

characteristic: strain

text: Mus musculus ESC


characteristic: INSDC first public

text: live

text: Generic

text: 9 weeks

characteristic: age

text: Mus musculus

text: Sperm were released from cauda epididymises of 9-week-old male C57BL/6N mice (Clea Japan, Tokyo, Japan).

text: male

characteristic: sex

text: Mus musculus sperm


characteristic: INSDC last update

text: live

text: Generic

text: 3.5 embryonic day

text: Mus musculus

text: blastocysts at embryonic day 3.5 were obtained from superovulated adult female C57BL/6N mice by flushing the uterus.

characteristic: sample comment

characteristic: sample name

text: male and female

text: Mus musculus blastocyst


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 7 to 8 weeks

text: Mus musculus

text: Fully grown germinal vesicle (GV) stage oocytes were collected from ovarian follicles of 7- to 8-week-old female C57BL/6N mice (Clea Japan, Tokyo, Japan) by 48-hour after the injection of pregnant mare serum gonadotropin.

text: female

text: Mus musculus wild-type GV oocyte

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 7 to 15 weeks

text: Mus musculus

text: Fully grown germinal vesicle (GV) stage oocytes were collected from ovarianÃ£ÂÂfollicles of 7- to 15-week-old Dnmt3L-/- female mice (129SvJaeÃÂ C57BL/6 hybrid genetic background) by 48-hour after the injection of pregnant mare serum gonadotropin. Reference Hata, K., Okano, M., Lei, H.& Li, E. Dnmt3L cooperates with the Dnmt3 family of de novo DNA methyltransferases to establish maternal imprints in mice. Development 129, 1983-1993 (2002).

text: female

text: 129SvJae x C57BL/6 hybrid

text: Mus musculus Dnmt3L-deficient GV oocyte


characteristic: External Id

text: live

text: Generic

characteristic: cell line

text: Homo sapiens


text: Dr. Okamura Laboratory, Center for Informational Biology, Ochanomizu University

characteristic: INSDC center name

text: live

text: Generic

text: Ciona intestinalis

characteristic: organism


text: live

text: Generic

text: Mus musculus

text: mouse embryo 11days TSS


text: live

text: Generic

text: Homo sapiens

text: source: DLD-1; description: chip_seq library.


text: live

text: Generic

text: Nipponbare

characteristic: cultivar

text: 5mm young panicle

characteristic: dev stage

text: Oryza sativa Japonica Group

text: To identify the target genes of a rice transcription factor OSH1, rice genomic DNA immunoprecipitated using specific antibody was sequenced.

text: OSH1 ChIP-seq 1


text: Ecological genomics lab, Department of Forest Genetics, Forestry and Forest Products Research Institute

characteristic: INSDC first public

text: live

text: Generic

text: Pandanus boninensis

text: RNA was extracted from pith of several year old seedlings of Pandanus boninensis, naturally grown in Bonin Island, and cDNA library construction and next generation sequencing by Roche 454 GS FLX sequencer with titanium chemistry were carried out.

text: Pandanus boninensis


text: live

text: Generic

text: Homo sapiens

text: Binding site : H3K4me3 ChIP_seq library. Human Beas2b IL-4 non-stimulation cell line.


text: live

text: Generic

text: Pandalus latirostris

text: Total RNA of Hokkai Shrimp, Pandalus latirostris, was extracted from ovary of five individuals of mature female. Samples were collected from two populations; Lake Notoro and Notsuke Bay in Hokkaido, Japan. Total RNA was pooled in each population.

text: Hokkai shrimp (Pandalus latirostris)


text: F2, Forestry Research Institute, Oji Paper Company Limited

text: live

text: Generic

text: blue gum

characteristic: common name

text: Eucalyptus globulus subsp. globulus

text: Selected clonal tree T0017 (tasmanian blue gum) was used for sequencing. RNA were purified from several tissues such as mature leaf, young leaf, shoot meristem, root, wood cambium and wood xylem in two years old trees.

text: globulus

characteristic: sub species

text: Mixed total RNA from cloned Eucalyptus globulus


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: Total RNA isolated from HeLa TO ARE cells transfected with RRP46-1 siRNA was analyzed.

characteristic: sample comment

text: RrpInput 0


characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells transfected with siControl (control siRNA) were incubated for 12 hours in the absence of BrU (chasing), followed by isolation of BrU-RNA by anti-BrU antibody. Purified BrU-RNAs were analyzed.

characteristic: sample name

text: Sicontrol 12h


text: Ogura Laboratory, Academic Production, Ochanomizu University

text: live

characteristic: INSDC status

text: Generic

text: uncultured marine microorganism

text: Normalization of the marine metatranscriptome could be useful in increasing the number of genes collected, and in reducing redundancies among highly expressed genes. Gene collection through the normalization method was effective in providing a foundation for comparative transcriptomic analysis.

text: Effective Gene Collection from the Metatranscriptome of Marine Microorganisms

characteristic: title


text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Macaca fuscata fuscata

text: Japanese macaque genome

text: fuscata

text: Japanese macaque genome


characteristic: External Id

text: Laboratory of Plant Molecular Biology, Graduate School of Biostudies, Kyoto University

text: live

text: Generic

characteristic: SRA accession

text: Marchantia polymorpha

text: Marchantia polymorpha Kitashirakawa-2, female standard line for genetic mapping


text: Laboratory of Kadowaki, Department of Metabolic Diseases, Graduate School of Medicine, The University of Tokyo

characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: source:NIH-3T3 fibroblasts growth_protocol:NIH-3T3 cells were maintained in DMEM, supplemented with 10% FBS.


text: live

text: Generic

text: Mus musculus

characteristic: organism

text: source:3T3-L1 cells, day 8 of differentiation growth_protocol:3T3-L1 cells were maintained in DMEM, supplemented with 10% FBS. For adipocyte differentiation, two days after confluence, 3T3-L1 cells were treated with dexamethasone (1 uM), IBMX (0.5 mM), and insulin (5 ug/ml) (DMI) for 48 hours, followed by treatment with insulin alone, with medium replacement every two days thereafter.


text: live

text: Generic

text: Mus musculus

text: source:3T3-L1 cells, day 0 of differentiation growth_protocol:3T3-L1 cells were maintained in DMEM, supplemented with 10% FBS.


text: live

text: Generic

text: Mus musculus

text: source:3T3-L1 cells, 36h of differentiation growth_protocol:3T3-L1 cells were maintained in DMEM, supplemented with 10% FBS. For adipocyte differentiation, two days after confluence, 3T3-L1 cells were treated with dexamethasone (1 uM), IBMX (0.5 mM), and insulin (5 ug/ml) (DMI) for 48 hours, followed by treatment with insulin alone, with medium replacement every two days thereafter.


text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: source: TIG-3; description: chip_seq library.


text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: Homo sapiens

text: non-immunoprecipitated sample. ChIP_seq library. Human Beas2b IL-4 stimulation cell line.


text: Laboratory of Plant Genes, Department of Plant Genome Research, Kazusa DNA Research Institute

text: live

text: Generic

text: Jatropha curcas

text: Genome sequencing of Jatropha curcas

text: Genome sequencing of Jatropha curcas


text: Laboratory of Ecogenetics, Environmental Biology Division, National Institute for Environmental Studies

text: live

text: Generic

characteristic: collection date

text: 26.48 N 127.95 E

characteristic: lat lon

text: Botryococcus braunii

text: This strain of Botryococcus braunii, isolated from the Kanna Dam in Okinawa, Japan on April 22nd, 2004, produces terpenoid-derived liquid hydrocarbons.

characteristic: strain

text: Botryococcus braunii (strain BOT22)


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells were incubated for 12 hours in the presence of anctinomycinD, followed by isolation of tatal RNA. BrU-containg RNAs were immunopurified by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: IP A+ 12h


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

characteristic: INSDC last update

text: live

text: Generic

text: Mus musculus

text: source: B22 cells were generated previously described in de la Serna et al. (2000) Mol. Cell. Biol. 20, 2839-2851


text: live

text: Generic

text: Homo sapiens

text: source: DLD-1; description: chip_seq library.

characteristic: sample comment


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

characteristic: INSDC secondary accession

text: live

text: Generic

text: Corynebacterium ulcerans 0102

text: Corynebacterium ulcerans 0102 producing diphtheria toxin.


text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells were incubated for 6 hours in the presence of anctinomycinD, followed by isolation of tatal RNA. BrU-containg RNAs were immunopurified by anti-BrU antibody. Purified BrU-RNAs were analyzed.

characteristic: sample name

text: IP A+6h


text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells transfected with siControl (control siRNA) were incubated for 4 hours in the absence of BrU (chasing), followed by isolation of BrU-RNA by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: Sicontrol 4h


text: Genomics Unit, Center of Molecular Biosciences, Tropical Biosphere Research Center

text: live

text: Generic

text: Gordonia rubripertincta

text: Bacteria and growth conditions: Cultures of R. corallinus B-276 (ATCC31338) were grown on Nutrient Broth No. 2 (Oxoid, Basingstoke, Hampshire, U.K.) containing 1% (w/v) glucose (NBG) at 30 Â°C with aerobic shaking (NSC). For the SC, propene and carbon were supplied via the gas phase with incubation in the NBG media at 30 Â°C. Cultures were grown either in shaking flasks or in sealed shaking flasks with propene (10%, v/v) supplied via the gas phase. Cells were harvested by centrifugation (8,000 Ã g for 10 min), washed twice with sterilized water, followed by re-centrifugation (8,000 Ã g for 10 min) to obtain cell pellets for DNA extraction. Cell pellets were stored at −80Â°C until use.

text: Rhodococcus corallinus strain B-276 (NSC)

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

text: Gordonia rubripertincta

text: Rhodococcus corallinus strain B-276 (SC)


text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

characteristic: NCBI submission package

text: Oryzias latipes

text: Medaka HNI genome

text: Medaka HNI genome


characteristic: External Id

text: live

text: Generic

text: Oryzias latipes

text: Medaka Kaga1 genome

text: Medaka Kaga1 genome


text: live

text: Generic

characteristic: SRA accession

text: Oryzias latipes

text: Medaka Nilan genome

text: Medaka Nilan genome


characteristic: INSDC center name

text: live

text: Generic

text: Oryzias latipes

text: Medaka HSOK genome

text: Medaka HSOK genome


text: live

text: Generic

text: Oryzias latipes

characteristic: organism

text: Medaka Hd-rR genome

text: Medaka Hd-rR genome


text: live

text: Generic

text: Homo sapiens

text: Total RNA isolated from HeLa TO ARE cells transfected with siControl was analyzed.

text: ConInput 0h


text: live

text: Generic

characteristic: cell line

text: Homo sapiens


text: live

text: Generic

text: Homo sapiens

text: source: TIG-3; description: chip_seq library.


text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells transfected with RRP46-1 siRNA were incubated for 24 hours in the absence of BrU (chasing), followed by isolation of BrU-RNA by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: Rrp 24h


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Mus musculus


text: Genomic Research Lab, National Center for Genetic Engineering and Biotechnology

text: live

text: Generic

text: Hevea brasiliensis subsp. brasiliensis

text: mRNA from young leaves

text: brasiliensis

characteristic: sub species

text: Hevea brasiliensis mRNA from young leaves


text: Laboratory of Forest Biology, Division of Forest and Biomaterials Science, Graduate School of Agriculture, Kyoto University

text: live

text: Generic

text: Callitris intratropica

text: cDNA sequences derived from a whole seedling of Callitris intratropica

text: Callitris intratropica cDNA sequence


text: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture

text: live

text: Generic

text: Bos taurus

text: For the analysis of gene expression, total RNA was extracted from granulosa cells of oocyte granulosa cells complexes (OGCs) that had been exposed to 0 Âµg/ml E2 for 4 days

text: Bovine granulosa cells that has been exposed to 0 mg/ml E2 for 4 days


text: live

text: Generic

text: Bos taurus

text: For the analysis of gene expression, total RNA was extracted from granulosa cells of oocyte granulosa cells complexes (OGCs) that had been exposed to 1 Âµg/ml E2 for 4 days

text: Bovine granulosa cells that has been exposed to 1 mg/ml E2 for 4 days


text: live

text: Generic

text: Bos taurus

text: For the analysis of gene expression, total RNA was extracted from oocyte granulosa cells complexes (OGCs) that had been exposed to 1 Âµg/ml E2 for 8 days and formed antrum.

text: Bovine granulosa cells that has been exposed to 1 mg/ml E2 for 8 days and formed antrum.


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

text: Generic

text: myoblast cells

characteristic: cell type

text: Mus musculus

text: source:C2C12 cells transfected mir3139 targeted Chd2


text: live

text: Generic

text: Ramos

text: Homo sapiens

text: non-immunoprecipitated sample. ChIP_seq library. Human Ramos IL-4 non-stimulation cell line.


text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells transfected with RRP46-1 siRNA were incubated for 12 hours in the absence of BrU (chasing), followed by isolation of BrU-RNA by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: Rrp 12h


text: The Asparagus Bean Genomics Group, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences

text: live

text: Generic

text: bottle gourd

characteristic: common name

text: Lagenaria siceraria

text: bottle gourd leaf DNA

text: bottle gourd leaf DNA


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus


text: Genetic Strain Stock Center, Mammalian Genetics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

characteristic: INSDC last update

text: live

text: Generic

text: Mus musculus

text: MSM/Ms

text: MSM/Ms

characteristic: strain

text: MSM/Ms Genome


characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

text: source: TIG3; description: chip_seq library.

characteristic: sample comment


text: Laboratory of Bioengineering, Department of Biotechnology Research, Kazusa DNA Research Institute

text: live

characteristic: INSDC status

text: Generic

text: tomato

text: Micro-Tom

characteristic: cultivar

text: Solanum lycopersicum

text: Micro-Tom plants were grown on culture medium (1/2 MS, 3%(w/v) sucrose, 0.8%(w/v) agar) in sterile condition. Genome DNA was isolated from one-month-old leaves by using DNeasy Plant Mini Kit (QIAGEN, catalog No. 69104) according to user's manual.

characteristic: sample name

text: Micro-Tom genome DNA


text: Genetic Strain Stock Center, Plant Genetics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Arabidopsis thaliana

text: Mutant synergid cell 100

text: Arabidopsis Transcriptome Multiplex-1_No4

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Arabidopsis thaliana

text: Wild type synergid cell

text: Arabidopsis Transcriptome Multiplex-1_No1


text: live

text: Generic

text: Arabidopsis thaliana

characteristic: organism

text: Mutant synergid cell 30

text: Arabidopsis Transcriptome Multiplex-1_No3


text: live

text: Generic

text: Arabidopsis thaliana

text: Wild type egg cell

text: Arabidopsis Transcriptome Multiplex-1_No5


text: live

text: Generic

characteristic: note

text: Homo sapiens

text: source: Fetal Heart; description: Oligo capped transcriptional start site library.


text: Experimental Farm, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa, rice panicle (3cM)

text: Oryza sativa Japonica Group


text: Bioinformatics Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences

text: live

text: Generic

characteristic: accession

text: Oryza rufipogon

text: Seeds of O. rufipogon W1943 were treated at 45 C for 10 days for breaking dormancy. Then the seeds were dehulled and steriled with a fungicidal reagents. Young seedlings were then grown for a week on a moist filter paper in petri dishes in a growth incubator (partial shade). Total plants were flash-frozen in liquid nitrogen and stored at -80 C until they were used. Total RNAs were prepared from the whole plants with RNeasy Plant Mini Kit (Qiagen, Valencia, CA USA).

text: Whole plant body of Oryza rufipogon W1943


text: Cellular Molecular Biology, Translational Medicine, Graduate School of Medicine, Chiba University

characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus

text: MLL-AF9 induced AML Ezh2 wild type (H3K27me3)

text: chiba iwama TP3 vivo wild H3K27me3


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

characteristic: INSDC last update

text: live

text: Generic

text: Trypanosoma cruzi

text: Trypanosoma cruzi, Chagas Disease

text: Trypanosoma entire organism


text: live

text: Generic

text: Mus musculus

text: MLL-AF9 induced AML Ezh2 knockout (H3K27me3)

text: chiba iwama TP3 vivo ko H3K27me3


text: Emerging Viruses Group, State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences

text: live

text: Generic

text: viral metagenome

text: Six bat fecal samples were collected from six different locations in China. All of the locations were close to human residences. To collect fecal samples from grouped bats, clean plastic sheets measuring 2.0Ã2.0 meters were placed under known bat roosting sites at approximately 18:00. The fresh fecal samples were collected at approximately 5:30-6:00 the following morning and were stored in liquid nitrogen. The samples were transported to the laboratory and stored at -80Â°C until analysis.

text: Bat fecal samples


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

text: Generic

text: Mus musculus

text: Pre-transplantation NSCs. The striatum of green mouse on embryonic day 14 was dissociated, and passaged 2 times in media hormone mix supplemented with EGF, FGF-2 and B28.

text: Pre-Tp #1


text: live

text: Generic

text: Mus musculus

text: NSCs allowed to differentiate for 7 days in culture dish.

text: 7 d in dish #2


text: live

text: Generic

text: Mus musculus

text: 7 d in dish #3


text: live

text: Generic

text: Mus musculus

text: NSCs immediately engrafted into injured spinal cord and isolated at 7 days after transplantation.

text: 7 d in injured SC #3


text: live

text: Generic

text: Mus musculus

text: NSCs engrafted into native spinal cord and isolated at 7 days after transplantation.

text: 7 d in native SC #1


text: live

text: Generic

text: Mus musculus

text: 7 d in native SC #3


text: live

text: Generic

text: Mus musculus

text: 7 d in native SC #2


text: live

text: Generic

text: Mus musculus

text: 7 d in injured SC #1


text: live

text: Generic

text: Mus musculus

text: 7 d in dish #1


text: live

text: Generic

text: Mus musculus

text: Pre-Tp #3


text: live

text: Generic

text: Mus musculus

text: Immediately engrafted into injured spinal cord and isolated at 7 days after transplantation.

text: 7 d in injured SC #2


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

characteristic: cell line

text: Homo sapiens


characteristic: INSDC secondary accession

text: live

text: Generic

text: hepatoma

characteristic: cell type

text: 15 years old

characteristic: dev stage

text: Homo sapiens

text: cytoplasmic RNA fraction from HepG2 cells (cell line; RCB-1648 Hep G2)

text: male

characteristic: sex

text: caucasian

characteristic: strain

text: cytoplasmic RNA

characteristic: tissue appendix

text: I75 and J01


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: hepatoma

text: rna_batch_name:exp-B technical replica 2, sample_name:HepG2 untransfected cells, cytoplasmic, RNA extraction from 18.03.09/19.03.09, wt1

characteristic: comment

text: 15 years old

text: Homo sapiens

text: Cytoplasmic RNA fraction from HepG2 cells, biological replicate B, technical replicate 1 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted from the nucleus and the cytoplasmic using TRIZOL reagent from SIGMA.

characteristic: sample comment

characteristic: sample name

text: male

text: caucasian


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: hepatoma

text: rna_batch_name:exp-B technical replica 1, sample_name:HepG2 untransfected cells, cytoplasmic, RNA extraction from 18.03.09/19.03.09, wt2

text: 15 years old

text: Homo sapiens

characteristic: organism

text: Cytoplasmic RNA fraction from HepG2 cells, biological replicate B, technical replicate 2 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted from the nucleus and the cytoplasmic using TRIZOL reagent from SIGMA.

text: male

text: caucasian

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: cell line

text: hepatoma

text: 15 years old

text: Homo sapiens

text: Nuclear RNA fraction and cytoplasmic RNA fraction from HepG2 cells, biological replicate A, technical replicate 1 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted

text: male

text: caucasian


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

text: hepatoma

characteristic: cell type

text: rna_batch_name:exp-B technical replica 2, sample_name:HepG2 untransfected cells, nucleus, RNA extraction from 18.03.09/19.03.09, wt1

text: 15 years old

characteristic: dev stage

text: Homo sapiens

text: Nuclear RNA fraction from HepG2 cells, biological replicate B, technical replicate 1 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted from the nucleus and the cytoplasmic using TRIZOL reagent from SIGMA.

text: male

characteristic: sex

text: caucasian

characteristic: strain


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: hepatoma

text: rna_batch_name:exp-C technical replica 1, sample_name:HepG2 untransfected cells, cytoplasmic, RNA extraction from 18.03.09/19.03.09, wt2

text: 15 years old

text: Homo sapiens

text: Cytoplasmic RNA fraction from HepG2 cells, biological replicate C, technical replicate 2 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted from the nucleus and the cytoplasmic using TRIZOL reagent from SIGMA.

text: male

text: caucasian


text: live

text: Generic

text: hepatoma

text: The HepG2 cells were obtained from ATCC and are the ENCODE stock/lot lot #4968519, ENCODE_12th

characteristic: comment

text: 15 years old

text: Homo sapiens

text: cytoplasmic polyA minus fraction from HepG2 cells (cells obtained from ATCC and are the ENCODE stock/lot lot #4968519, Tier II HepG2 cyto polyA-, ENCODE_11th)

characteristic: sample comment

characteristic: sample name

text: male

text: caucasian

text: I78 and J04


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: hepatoma

text: rna_batch_name:exp-B technical replica 1, sample_name:HepG2 untransfected cells, nucleus, RNA extraction from 18.03.09/19.03.09, wt2

text: 15 years old

text: Homo sapiens

text: Nuclear RNA fraction from HepG2 cells, biological replicate B, technical replicate 2 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted from the nucleus and the cytoplasmic using TRIZOL reagent from SIGMA.

text: male

text: caucasian


characteristic: INSDC first public

text: live

text: Generic

text: hepatoma

text: rna_batch_name:exp-C technical replica 1, sample_name:HepG2 untransfected cells, nucleus, RNA extraction from 18.03.09/19.03.09, wt2

text: 15 years old

text: Homo sapiens

characteristic: organism

text: Nuclear RNA fraction from HepG2 cells, biological replicate C, technical replicate 2 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted from the nucleus and the cytoplasmic using TRIZOL reagent from SIGMA.

text: male

text: caucasian

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: cell line

text: hepatoma

text: The HepG2 cells were obtained from ATCC and are the ENCODE stock/lot lot #4968519, Tier II HepG2 cyto polyA-, ENCODE_11th

text: 15 years old

text: Homo sapiens

text: male

text: caucasian

text: I77 and J03


text: live

text: Generic

text: hepatoma

characteristic: cell type

text: rna_batch_name:exp-C technical replica 2, sample_name:HepG2 untransfected cells, nucleus, RNA extraction from 18.03.09/19.03.09, wt1

text: 15 years old

characteristic: dev stage

text: Homo sapiens

text: Nuclear RNA fraction from HepG2 cells, biological replicate C, technical replicate 1 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted from the nucleus and the cytoplasmic using TRIZOL reagent from SIGMA.

text: male

characteristic: sex

text: caucasian


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: hepatoma

text: rna_batch_name:exp-C technical replica 2, sample_name:HepG2 untransfected cells, cytoplasmic, RNA extraction from 18.03.09/19.03.09, wt1

text: 15 years old

text: Homo sapiens

text: Cytoplasmic RNA fraction from HepG2 cells, biological replicate C, technical replicate 1 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted from the nucleus and the cytoplasmic using TRIZOL reagent from SIGMA.

text: male

text: caucasian

characteristic: strain


text: live

text: Generic

characteristic: NCBI submission package

text: hepatoma

text: rna_batch_name:exp-A technical replica 2, sample_name:HepG2 untransfected cells, cytoplasmic, RNA extraction from 18.03.09/19.03.09, wt1

characteristic: comment

text: 15 years old

text: Homo sapiens

text: Cytoplasmic RNA fraction from HepG2 cells, biological replicate A, technical replicate 1 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted

characteristic: sample comment

text: male

text: caucasian


characteristic: External Id

text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

characteristic: INSDC center name

text: live

text: Generic

text: hepatoma

text: rna_batch_name:exp-A technical replica 2, sample_name:HepG2 untransfected cells, nucleus, RNA extraction from 18.03.09/19.03.09, wt2

text: 15 years old

text: Homo sapiens

text: Nuclear RNA fraction from HepG2 cells, biological replicate A, technical replicate 1 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted from the nucleus and the cytoplasmic using TRIZOL reagent from SIGMA.

characteristic: sample name

text: male

text: caucasian


characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: hepatoma

text: 15 years old

text: Homo sapiens

characteristic: organism

text: nuclear RNA fraction from HepG2 cells (cell line; RCB-1648 Hep G2)

text: male

text: caucasian

text: nuclear RNA

characteristic: tissue appendix

text: I76 and J02


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: cell line

text: hepatoma

text: rna_batch_name:exp-A technical replica 1, sample_name:HepG2 untransfected cells, nucleus, RNA extraction from 18.03.09/19.03.09, wt2

text: 15 years old

text: Homo sapiens

text: Nuclear RNA fraction from HepG2 cells, biological replicate A, technical replicate 2 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted from the nucleus and the cytoplasmic using TRIZOL reagent from SIGMA.

text: male

text: caucasian

characteristic: title


text: live

characteristic: INSDC status

text: Generic

text: hepatoma

characteristic: cell type

text: rna_batch_name:exp-A technical replica 1, sample_name:HepG2 untransfected cells, cytoplasmic, RNA extraction from 18.03.09/19.03.09, wt2

text: 15 years old

characteristic: dev stage

text: Homo sapiens

text: Cytoplasmic RNA fraction from HepG2 cells, biological replicate A, technical replicate 2 of a set of three biological replicates (A,B,C) and two technical duplicates (1,2) of HepG2 cells collected 72 hours plating from which RNA was extracted

text: male

characteristic: sex

text: caucasian


text: Dermatology, Medicine

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: human skin metagenome

text: Microbiome from subepidermal compartment (epidermis) of normal skin (patient#15)

text: The microbiome extends to subepidermal compartments of normal skin


characteristic: External Id

text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (epidermis) of normal skin (patient#1)

characteristic: sample comment


text: Dermatology, Medicine

characteristic: INSDC center name

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (epidermis) of normal skin (patient#0)

characteristic: sample name


text: Dermatology, Medicine

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: human skin metagenome

text: Microbiome from subepidermal compartment (addipose tissue) of normal skin (patient#1)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

characteristic: organism

text: Microbiome from subepidermal compartment (adipose tissue) of normal skin (patient#20)


text: Dermatology, Medicine

characteristic: INSDC last update

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (adipose tissue) of normal skin (patient#0)


text: Dermatology, Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (follicle) of normal skin (patient#1)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (epidermis) of normal skin (patient#19)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (follicle) of normal skin (patient#15)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (dermis) of normal skin (patient#2)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (adipose tissue) of normal skin (patient#15)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (adipose tissue) of normal skin (patient#2)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (follicle) of normal skin (patient#2)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (follicle) of normal skin (patient#0)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (follicle) of normal skin (patient#19)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (follicle) of normal skin (patient#20)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (adipose tissue) of normal skin (patient#19)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (epidermis) of normal skin (patient#20)

text: The microbiome extends to subepidermal compartments of normal skin


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (dermis) of normal skin (patient#15)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (dermis) of normal skin (patient#20)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (dermis) of normal skin (patient#19)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (epidermis) of normal skin (patient#2)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (dermis) of normal skin (patient#1)


text: Dermatology, Medicine

text: live

text: Generic

text: human skin metagenome

text: Microbiome from subepidermal compartment (dermis) of normal skin (patient#0)


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

characteristic: cell line

text: Mus musculus


text: live

text: Generic

text: Homo sapiens

text: Binding site H3Ac. ChIP_seq library. Human Beas2b IL-4 non-stimulation cell line.

characteristic: title


text: TEDA School of Biological Sciences and Biotechnolgy, Nankai University

text: live

characteristic: INSDC status

text: Generic

text: Escherichia coli

text: Replicate evolution using glucose-limited chemostat culture, initiated with a common ancestral strain, BW2952.

characteristic: strain

text: Escherichia coli 11Za1


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 8W33


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 5W3


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 8W18


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 4R17


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 11Za4


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 3X37


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 8W21


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 5W21


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 8W37


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 5W23


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 2W14


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 3X31


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli BW3767


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 3X27


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli BW4001


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 2W2


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 2W30


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 10W34


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 3X10


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 2W11


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 2W22


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 10W40


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 4R16


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 11Za3


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 2W29


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 4R23


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 3X16


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 10W21


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 11Za5


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 11Za12


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 8W17


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 4R10


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 5W30


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 8W20


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli BW4004


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 4R1


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli BW4040


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli BW4005


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli BW4002


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 11Za16


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 5W25


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli BW4029


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 5W19


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 4R18


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 3X17


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli 3X30


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli BW4030


text: live

text: Generic

text: Homo sapiens


text: RNA, Institute for Advanced Biosciences, Keio University

text: live

text: Generic

text: Escherichia coli K-12

text: Escherichia coli K-12 BW25113 cells were grown to late exponential phase (O.D.600 = 0.76) in modified M63 medium. Then, low molecular weight RNAs (<200 nt) were isolated from the cultured cells using mirVana miRNA Isolation Kit (Ambion). cDNA library was built from the RNA sample ligated with both 5' and 3' end specific RNA adapters for determining direction of each transcript.

text: low molecular weight RNA


text: Marine Genomics Unit, Okinawa Institute of Science and Technology

text: live

text: Generic

text: pearl oyster

characteristic: common name

text: Pinctada fucata

text: A Pinctada fucata male provided by Pearl Research Institute of Mikimoto Co.Ltd, Shima, Mie, Japan, 2011. Sperm from a single male served as the DNA source of the genome sequence.

text: Pinctada fucata genome sequencing


text: live

text: Generic

text: pearl oyster

text: Pinctada fucata

text: Pinctada fucata egg and sperm were provided by Mie Prefecture Fisheries Research Institute, Shima, Japan, 2011. Sperm from a single male and egg from a single female are used for fertilization, then several stages of embryo were serverd for the transcriptome sequence.

text: Pinctada fucata transcriptome sequencing


text: live

text: Generic

text: Homo sapiens

text: source: DLD-1; description: chip_seq library.


text: live

text: Generic

text: Homo sapiens


text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Macaca fuscata fuscata

text: Japanese macaque genome

text: fuscata

characteristic: sub species

text: Japanese macaque genome


text: Division of Experimental Immunology, Institute for Genome Research, The University of Tokushima

text: live

text: Generic

characteristic: NCBI submission model

text: Mus musculus

text: Naive CD8+ T cells from beta5t-/- mice

text: Naive CD8+ T cells from beta5t-/- mice


text: Laboratory of Plant Genes, Department of Plant Genome Research, Kazusa DNA Research Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Jatropha curcas

text: Genome sequencing of Jatropha curcas

text: Genome sequencing of Jatropha curcas


characteristic: External Id

text: live

text: Generic

characteristic: environmental sample

text: hot springs metagenome

text: Sample was obtained from Yunohama hot spring (Tsuruoka, Yamagata, Japan) with a temperature of 57ÃÂ°C and pH of 8.1. Twenty liters of unfiltered Yunohama hot spring water was bottled from a tank (a reservoir of hot spring water pumped from 250 - 1000 m in depth). Small RNA fraction (< 200 bp) was isolated from 3 liters of sample water using mirVana miRNA Isolation Kit (Ambion).

text: small RNA library in Yunohama Hot spring


text: Laboratory of Genome Pharmaceuticals, School of Pharmacy, Nihon University

characteristic: INSDC center name

text: live

text: Generic

text: Plautia stali symbiont

text: Plautia stali symbiont was collected from midgut ceca. DNA was analyzed using Genome sequencer 454.

characteristic: sample comment

text: Plautia stali symbiont 454 sequcece


characteristic: INSDC first public

text: live

text: Generic

text: Jatropha curcas

text: Sequencing of jatropha leaf cDNA

characteristic: sample name

text: jatropha leaf cDNA


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

characteristic: SRA accession

text: 28 days old

characteristic: dev stage

text: Rattus norvegicus

characteristic: organism

text: Wistar

text: Barrel cortex, all layers

characteristic: tissue appendix

text: cerebral cortex

characteristic: tissue type


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 3 days old

text: Rattus norvegicus

text: Wistar

text: Barrel cortex, all layers

text: cerebral cortex

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

text: 7 days old

text: Rattus norvegicus

text: Wistar

characteristic: strain

text: Barrel cortex, all layers

text: cerebral cortex


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission package

text: 10-12 days embryo

text: Rattus norvegicus

text: Sprague-Dawley

text: embryo


characteristic: INSDC center name

text: live

text: Generic

text: 8-12 weeks old

text: Rattus norvegicus

text: Sprague-Dawley

text: brain


text: live

text: Generic

text: 28 days old

text: Rattus norvegicus

text: Wistar

text: retrosplenial cortex, layer 3

text: cerebral cortex


text: live

text: Generic

text: 3 days old

text: Rattus norvegicus

text: Wistar

text: retrosplenial cortex, layer 3

text: cerebral cortex


text: live

text: Generic

text: Rattus norvegicus


text: live

text: Generic

text: Rattus norvegicus

text: Generic sample from Rattus norvegicus


text: live

text: Generic

text: 5 days old

text: Rattus norvegicus

text: Wistar

text: retrosplenial cortex, layer 3

text: cerebral cortex


text: live

text: Generic

text: 9 days old

text: Rattus norvegicus

text: Wistar

text: Barrel cortex, all layers

text: cerebral cortex


text: live

text: Generic

text: 12 days old

text: Rattus norvegicus

text: Wistar

text: retrosplenial cortex, layer 3

text: cerebral cortex


text: live

text: Generic

text: 5 days old

text: Rattus norvegicus

text: Wistar

text: Barrel cortex, all layers

text: cerebral cortex


text: live

text: Generic

text: 18 days old

text: Rattus norvegicus

text: Wistar

text: retrosplenial cortex, layer 3

text: cerebral cortex


text: live

text: Generic

text: 18 days old

text: Rattus norvegicus

text: Wistar

text: Barrel cortex, all layers

text: cerebral cortex


text: live

text: Generic

text: 7 days old

text: Rattus norvegicus

text: Wistar

text: retrosplenial cortex, layer 3

text: cerebral cortex


text: live

text: Generic

text: 12 days old

text: Rattus norvegicus

text: Wistar

text: Barrel cortex, all layers

text: cerebral cortex


text: live

text: Generic

text: 9 days old

text: Rattus norvegicus

text: Wistar

text: retrosplenial cortex, layer 3

text: cerebral cortex


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

characteristic: cell line

text: Mus musculus

characteristic: sample comment


text: Bioinformatics Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences

characteristic: INSDC first public

text: live

text: Generic

text: shoot metagenome

text: Mixed transcriptome isolated from the rice fourth leaf blades at 24 hours post-inoculation with the compatible blast fungus strain (Ina86-137)

characteristic: sample name

text: Mixed transcriptome of rice Oryza sativa L. ssp. japonica cv. Nipponbare (Pia) and the compatible blast fungus strain (Ina86-137)


text: live

text: Generic

characteristic: SRA accession

text: Pyricularia oryzae

text: Magnaporthe oryzae (Ina86-137)

text: Magnaporthe oryzae (Ina86-137)


text: live

text: Generic

text: Pyricularia oryzae

characteristic: organism

text: Magnaporthe oryzae (P91-15B)

text: Magnaporthe oryzae (P91-15B)


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa L. ssp. japonica cv. Nipponbare (Pia)


text: live

text: Generic

text: shoot metagenome

text: Mixed transcriptome isolated from the rice fourth leaf blades at 24 hours post-inoculation with the compatible blast fungus strain (P91-15B).

text: Mixed transcriptome of rice Oryza sativa L. ssp. japonica cv. Nipponbare (Pia) and the incompatible blast fungus strain (P91-15B)


text: live

text: Generic

text: Homo sapiens


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

text: live

text: Generic

text: Streptococcus salivarius HT9R

text: HT9R strain


text: live

text: Generic

text: Homo sapiens


text: Comparative Genomics Laboratory, Graduate School of Information Science, Nara Institute of Science and Technology

text: live

text: Generic

text: Bacillus subtilis subsp. subtilis str. 168

text: Resequencing of laboratory stock varieties and SNP detections

text: subtilis

characteristic: sub species

text: Whole genome resequencing of B. subtilis subtilis 168 (NAIST)


text: Ozcelik Lab, Department of Molecular Biology and Genetics, Faculty of Science, Bilkent University

text: live

text: Generic

text: Homo sapiens

text: Obligate carrier mother of affected siblings. Originated from south eastern Turkey. Genomic DNA was isolated from peripheral blood by Phenol-Chloroform extraction.


text: live

text: Generic

text: Homo sapiens

text: Affected individual. Originated from south eastern Turkey. Genomic DNA was isolated from peripheral blood by Phenol-Chloroform extraction.


text: live

text: Generic

text: Homo sapiens

text: Obligate carrier father of affected siblings. Originated from south eastern Turkey. Genomic DNA was isolated from peripheral blood by Phenol-Chloroform extraction.


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

text: Homo sapiens

text: control replicate #1


text: live

text: Generic

text: Homo sapiens

text: 4-OHT treated, AID-activated replicate #2


text: live

text: Generic

text: Homo sapiens

text: control replicate #2


text: live

text: Generic

text: Homo sapiens

text: 4-OHT treated, AID-activated replicate #1


text: Ecological genomics lab, Department of Forest Genetics, Forestry and Forest Products Research Institute

text: live

text: Generic

text: Elaeocarpus photiniifolius

text: RNA was extracted from inner bark, current year twigs and terminal buds of several year old seedling of Elaeocarpus photiniifolius, naturally grown in Bonin Island, and cDNA library construction and next generation sequencing by Roche 454 GS FLX sequencer with titanium chemistry were carried out.

text: Elaeocarpus photiniifolius


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: source: DLD-1; description: chip_seq library.


text: Department of Bioscience, Faculty of Applied Bioscience, Tokyo Univetsity of Agriculture

text: live

text: Generic

text: Bos taurus

text: Genomic DNA from Kuchinoshima-#8915


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

text: Generic

text: Mus musculus

text: source: C2C12 cells transfected mir5111 targeted Chd2


text: Experimental Farm, Graduate School of Agriculture, Kyoto University

text: live

text: Generic

text: Prunus mume var. mume

text: Flower buds were collected at the endodormant stage in November.

text: endodormant flower bud (11)

text: mume

characteristic: variety


characteristic: INSDC last update

text: live

text: Generic

text: Prunus mume var. mume

text: Branches of current seasonÃ¢ÂÂs growth, which were collected in mid-November, were maintained at 24 oC day / 22 oC night temperatures (non-cold temperature treatment) under the 9 hr light and 15 hr dark condition for 60 days. After temperature treatments, flower buds were collected from non-cold temperature-treated branches.

text: endodormant flower bud (non-cold temperature treatment)

text: mume


characteristic: INSDC secondary accession

text: live

text: Generic

text: Prunus mume var. mume

text: Branches of current seasonÃ¢ÂÂs growth, which were collected in mid-November, were maintained at 12 C day / 6 C night temperatures (cold temperature treatment) under the 9 hr light and 15 hr dark condition for 60 days. After temperature treatments, leaf buds were collected from cold temperature-treated branches.

text: ecodormant leaf bud (cold temperature treatment)

text: mume


text: live

characteristic: INSDC status

text: Generic

text: Prunus mume var. mume

text: Branches of current seasonÃ¢ÂÂs growth, which were collected in mid-November, were maintained at 12 oC day / 6 oC night temperatures (cold temperature treatment) under the 9 hr light and 15 hr dark condition for 60 days. After temperature treatments, flower buds were collected from cold temperature-treated branches.

text: ecodormant flower bud (cold temperature treatment)

text: mume


text: live

text: Generic

text: Prunus mume var. mume

text: Branches of current seasonÃ¢ÂÂs growth, which were collected in mid-November, were maintained at 24 C day / 22 C night temperatures (non-cold temperature treatment) under the 9 hr light and 15 hr dark condition for 60 days. After temperature treatments, leaf buds were collected from non-cold temperature-treated branches.

text: endodormant leaf bud (non-cold temperature treatment)

characteristic: title

text: mume