Sample 1

text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Holstein-Friesian

characteristic: breed

text: Bovine tuberculosis (bTB) is a chronic disease of cattle caused by Mycobacterium bovis, a member of the Mycobacterium tuberculosis complex group of bacteria. Vaccination of cattle might offer a long-term solution for controlling the disease and priority has been given to the development of a cattle vaccine against bTB. Identification of biomarkers in tuberculosis research remains elusive and the goal is to identify host correlates of protection. We hypothesized that by studying global gene expression; we could identify predictors of protection and surrogates of protective immunity. Calves were vaccinated with BCG or with a heterologous BCG prime adenovirally vectored subunit boosting protocol. Protective efficacy was determined after M. bovis challenge. RNA was prepared from PPD-stimulated PBMC prepared from vaccinated-protected, vaccinated-unprotected and unvaccinated control cattle prior to M. bovis challenge and global gene expression determined by RNA-seq. Cytokine-cytokine receptor interaction was the most significant pathway related to this dataset with IL-22 expression identified as the dominant surrogate of protection besides INF- Finally, the expression of these candidate genes identified by RNA-seq was evaluated by QRT-PCR in an independent set of PBMC samples from BCG vaccinated and unvaccinated calves. This experiment confirmed the importance of IL-22 as predictor of vaccine efficacy.

text: Bos taurus

text: Global gene expression analysis in vaccinated cattle revealed a dominant role of IL-22 for protection against bovine tuberculosis


status: PUBLIC

characteristic: External Id

text: Regev Lab, Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: TT

tag: attribute

characteristic: developmental stage

text: Mus musculus

characteristic: organism

text: TT

characteristic: strain

characteristic: title


text: Regev Lab, Broad Institute

text: live

text: Generic

text: Mus musculus


text: Mello, Program in Molecular Medicine, University of Massachusetts Medical School

text: live

text: Generic

text: gravid adult

characteristic: age

text: wild-type

characteristic: genotype/variation

text: Caenorhabditis elegans

text: wild-type

characteristic: strain background


text: live

text: Generic

text: gravid adult

text: prg-1 mutant

text: Caenorhabditis elegans

text: prg-1 mutant


text: live

text: Generic

text: gravid adult

text: flag::prg-1 (WT); prg-1

text: Caenorhabditis elegans

text: flag::prg-1 (WT); prg-1

text: N2::prg-1 mutant


text: live

text: Generic

text: gravid adult

text: flag::prg-1 (D583A); prg-1

text: Caenorhabditis elegans

text: flag::prg-1 (D583A); prg-1

text: N2::prg-1 mutant


text: live

text: Generic

text: gravid adult

text: 21U-RNA Reporter 1

text: Caenorhabditis elegans

text: 21U-RNA Reporter 1


text: live

text: Generic

text: gravid adult

text: control Reporter 1

text: Caenorhabditis elegans

text: control Reporter 1


text: live

text: Generic

text: gravid adults

text: wild type

text: Caenorhabditis elegans

text: adult gonade

characteristic: tissue


characteristic: External Id

text: live

text: Generic

text: gravid adults

text: neSi12 cdk-1::gfp RNAe

text: Caenorhabditis elegans

text: cdk-1::gfp silenced line

text: adult gonade


characteristic: INSDC center name

text: live

text: Generic

text: gravid adults

text: neSi11 gfp::cdk-1 RNAe

text: Caenorhabditis elegans

text: gfp::cdk-1 silenced line

text: adult gonade


characteristic: INSDC first public

text: live

text: Generic

text: gravid adults

text: neSi12 cdk-1::gfp

text: Caenorhabditis elegans

text: cdk-1::gfp expressed line

text: adult gonade


characteristic: INSDC last update

text: live

text: Generic

text: gravid adults

text: neSi9 gfp::csr-1 RNAe

text: Caenorhabditis elegans

text: gfp::csr-1 silenced lne

text: adult gonade


characteristic: INSDC secondary accession

text: live

text: Generic

text: gravid adults

text: neSi10 gfp::csr-1

text: Caenorhabditis elegans

text: gfp::csr-1 expressed line

text: adult gonade


text: live

characteristic: INSDC status

text: Generic

text: gravid adults

text: neSi10 gfp::csr-1 RNAe

text: Caenorhabditis elegans

text: gfp::csr-1 silenced line

text: adult gonade


text: live

text: Generic

characteristic: NCBI submission model

text: gravid adults

text: neSi9 gfp::csr-1

text: Caenorhabditis elegans

text: gfp::csr-1 expressed line

text: adult gonade


text: live

text: Generic

characteristic: NCBI submission package

text: gravid adults

text: wild type

text: Caenorhabditis elegans

text: N2 Wild type control

text: adult gonade


text: live

text: Generic

characteristic: SRA accession

text: gravid adults

text: Caenorhabditis elegans

text: WAGO-9 Input

characteristic: sample type

text: WAGO-9 Input sample

text: adult gonade

text: WAGO-9 Input


text: live

text: Generic

text: gravid adults

text: M2 FLAG monoclonal antibody

characteristic: ip antibody

text: Sigma

characteristic: ip antibody vendor

text: Caenorhabditis elegans

characteristic: organism

text: WAGO-9 IP

text: WAGO-9 IP sample

text: adult gonade

text: WAGO-9 IP


text: Arizona State University, The Biodesign Institute

text: live

text: Generic

text: Homo sapiens

text: fecal sample

characteristic: isolation source

text: human gut metagenome

text: Generic sample from Mixed cultures from fecal sample

characteristic: title


A-excl.

text: live

text: Generic

text: Homo sapiens

text: fecal sample

text: human gut metagenome


text: USDA

text: live

text: Generic

text: IL4 study, 1st run.

characteristic: description

text: Sus scrofa domesticus


text: USDA

text: live

text: Generic

text: IL4 study, 1st run, animal 2.

text: Sus scrofa domesticus


text: USDA

text: live

text: Generic

text: IL4 study, 2nd run, animal 1

text: Sus scrofa domesticus


text: USDA

text: live

text: Generic

text: IL4 study, 2ns run, animal 2

text: Sus scrofa domesticus


text: IMBA

text: live

text: Generic

text: MTD>w-

characteristic: genotype

text: Drosophila melanogaster

text: Ovary

text: from 5-6 days old flies

characteristic: stage

text: ovary

characteristic: tissue

text: small RNAs (18-29nt) from MTD>w-


characteristic: External Id

text: IMBA

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: MTD>GFP shRNA

text: Drosophila melanogaster

text: Ovary

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from MTD>GFP shRNA


text: IMBA

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: MTD>armi shRNA

text: Drosophila melanogaster

text: Ovary

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from MTD>armi shRNA


text: IMBA

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: MTD>zuc shRNA

text: Drosophila melanogaster

text: Ovary

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from MTD>zuc shRNA


text: IMBA

text: live

text: Generic

text: MTD>piwi shRNA

text: Drosophila melanogaster

text: Ovary

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from MTD>piwi shRNA


text: IMBA

text: live

text: Generic

text: MTD>vas shRNA

text: Drosophila melanogaster

text: Ovary

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from MTD>vas shRNA


text: IMBA

text: live

text: Generic

text: MTD>aub shRNA

text: Drosophila melanogaster

text: Ovary

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from MTD>aub shRNA


text: IMBA

text: live

text: Generic

text: MTD>vret shRNA

text: Drosophila melanogaster

text: Ovary

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from MTD>vret shRNA


text: IMBA

text: live

text: Generic

text: UAS-Dcr-2;NGT;nanosGAL4>shu RNAi

text: Drosophila melanogaster

text: Ovary

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from UAS-Dcr-2;NGT;nanosGAL4>shu RNAi


text: IMBA

text: live

text: Generic

text: anti-FLAG

characteristic: antibody

text: Ovarian Somatic Cells (OSCs)

characteristic: cell type

text: wt transfected with act>FLAG_HA_Piwi

text: Drosophila melanogaster

text: Ovarian Somatic Cells (OSCs)

text: 48h after transfection

text: small RNAs from FLAG_HA_Piwi Immunoprecipitation


text: IMBA

text: live

text: Generic

text: anti-FLAG

text: Ovarian Somatic Cells (OSCs)

text: wt transfected with act>FLAG_HA_Aub

text: Drosophila melanogaster

characteristic: organism

text: Ovarian Somatic Cells (OSCs)

text: 48h after transfection

text: small RNAs from FLAG_HA_Aub Immunoprecipitation


text: IMBA

text: live

text: Generic

text: Drosophila melanogaster

text: Ovary

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from shu[1]/CyO hets and shu[Def]/CyO hets. mixed

characteristic: title


text: IMBA

text: live

text: Generic

text: Drosophila melanogaster

text: Ovary

text: from 5-6 days old flies

text: ovary

text: small RNAs (18-29nt) from shu[1]/shu[Def] mutants


text: Molecular Molecular Cytogenetics and Genomics Laboratory, Department of Veterinary Integrative BioSciences, Texas A&M University

text: live

text: Generic

text: Normal fertile male

characteristic: fertility stutus

text: Equus caballus

text: Stallion Spermatozoa

text: Sperm

text: Stallion sperm transcriptome 1


text: live

text: Generic

text: Normal fertile male

text: Equus caballus

text: Stallion Spermatozoa

text: Sperm

text: Stallion sperm transcriptome 2


text: Northwest A&F University

text: live

text: Generic

text: Robinia pseudoacacia

text: root

characteristic: tissue-type

text: Robinia pseudoacacia root SSH library


text: Central South University

text: live

text: Generic

text: Panax ginseng

text: Ginseng suspension cell 24 h induction differential expression Library


text: The Hong Kong University of Science and Technology

text: live

text: Generic

text: Two SSH libraries were constructed to isolated the genes differentially expressed between the Hydroides elegans competent larvae and metamorphosed juvenile. This forward hybridization library will isolated the genes highly expressed in competent larvae but down regulated in metamorphosed juvenile.

characteristic: description

characteristic: dev-stage

text: Hydroides elegans

text: hermaphrodite

characteristic: sex

text: whole body

text: Hydroides elegans metamorphosis SSH screening, forward hybridization library

text: pMD18 simple vector

characteristic: vector


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Two SSH libraries were constructed to isolated the genes differentially expressed between the Hydroides elegans competent larvae and metamorphosed juvenile. This reversed hybridization library will isolated the genes highly expressed in metamorphosed juvenile but not in competent larvae.

text: Hydroides elegans

text: hermaphrodite

text: whole body

text: Hydroides elegans metamorphosis SSH screening, reverse hybridization library

text: pMD18 simple vector


text: Dongguk Univ.

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: collection date

text: Korea

characteristic: geo loc name

text: Triticum aestivum

text: mRNA

characteristic: sample-type

text: 28 degree


text: Dongguk Univ.

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Korea

text: Triticum aestivum

text: mRNA

text: 21 degree


text: A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland

text: live

text: Generic

text: MRC-5 Lung Fibroblast

characteristic: cell type

text: Homo sapiens

characteristic: organism

text: HIV-1 integrase - I-PpoI fusion protein Integration Site Library

characteristic: title


Sample 2

text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Holstein-Friesian

characteristic: breed

text: Identification of biomarkers of protection against bovine tuberculosis through global gene expression analysis in vaccinated cattle.

characteristic: description

text: Bos taurus

text: Vaccinated cattle sample


text: Fudan university

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Archaea

text: mcrA genes recovered from a mudflat of Yangtze estuary-site 1


characteristic: External Id

text: Fudan university

text: live

text: Generic

text: Archaea

text: mcrA genes recovred from a mudflat of Yangtze estuary-site 2


text: Fudan university

characteristic: INSDC center name

text: live

text: Generic

text: Archaea

text: mcrA genes recovered from a mudflat of Yangtze estuary-site 3


S.alterniflora

text: SYSU

characteristic: INSDC first public

text: live

text: Generic

text: Sporobolus alterniflorus

text: S.alterniflora leaf


Acropora spp.

text: South China Sea Institute of Oceanology, Chinese Academy of Sciences

characteristic: INSDC last update

text: live

text: Generic

text: Cnidaria

text: Transcriptom comparison within zooids from the stony coral Acropora spp. (Cnidaria) supports increase stress and immune responses in bleached zooids


Korean Wheat

text: UNR

text: live

characteristic: INSDC status

text: Generic

text: Korean Wheat Temperature treat at 21 / 28 degree

text: Triticum aestivum

text: Korean Wheat High Temperature Jokwang 28


text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Bos taurus

text: Unvaccinated - non stimulated


text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Bos taurus

text: Unvaccinated - PPDB stimulated


text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Bos taurus

text: Unprotected - non stimulated


text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Bos taurus

text: Unprotected - PPDB stimulated


text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Bos taurus

text: Protected - non stimulated


text: Helmholtz Centre for Infection Research

text: live

text: Generic

text: Bos taurus

text: Protected - PPDB stimulated


text: Leibniz Institute for Age Research - Fritz Lipmann Institute

text: live

text: Generic

text: Wild-type zebrafish of the TueAB strain were kept in groups and only males were used for RNA isolation at an age of 3.5 years. Total RNA was isolated from skin using Trizol (Invitrogen).

text: Danio rerio

text: 1 male Danio rerio (strain TueAB), 3.5y, skin, mRNA


text: live

text: Generic

text: Wild-type zebrafish of the TueAB strain were kept in groups and only males were used for RNA isolation at an age of 5 months. Total RNA was isolated from skin using Trizol (Invitrogen).

text: Danio rerio

text: 1 male Danio rerio (strain TueAB), 5m, skin, mRNA


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: Hardy pro-B cell fraction B

characteristic: cell

text: wt

characteristic: genotype

text: Mus musculus

text: Hardy pro-B cell fraction B, wt

characteristic: strain

text: RNASeq of pro-B cell fraction B, wt


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

characteristic: NCBI submission model

text: Hardy pro-B cell fraction B

text: wt

text: Mus musculus

text: Hardy pro-B cell fraction CC', wt

text: RNASeq of pro-B cell fraction CC', wt


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

characteristic: NCBI submission package

text: Hardy pro-B cell fraction CC'

text: Mus musculus

text: Hardy pro-B cell fraction B, Fnip1-/-

text: RNASeq of pro-B cell fraction B, Fnip1-/-


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: Hardy pro-B cell fraction CC'

text: Mus musculus

text: Hardy pro-B cell fraction CC', Fnip1-/-

text: RNASeq of pro-B cell fraction CC', Fnip1-/-


text: Stanford University

text: live

text: Generic

text: Primary human acute myeloid leukemia sample from Stanford University (Ravindra Majeti, 2012). Includes both the leukemia and normal T cell control sample.

text: Homo sapiens

text: Majeti 2012 - AML Leukemia and T cell Exomes SU008


text: Stanford University

text: live

text: Generic

text: Homo sapiens

text: Majeti 2012 - AML Leukemia and T cell Exomes SU030


text: Stanford University

text: live

text: Generic

text: Homo sapiens

text: Majeti 2012 - AML Leukemia and T cell Exomes SU014


text: Molecular Biology and Genetics, Cornell University

text: live

text: Generic

characteristic: cell line

text: LacZ

characteristic: genotype/variation

text: Drosophila melanogaster

text: S2 cell line

text: LacZ-RNAi replicate 1


text: live

text: Generic

text: LacZ

text: Drosophila melanogaster

characteristic: organism

text: S2 cell line

text: LacZ-RNAi replicate 2

characteristic: title


text: live

text: Generic

text: Drosophila melanogaster

text: S2 cell line

text: Fcp1-RNAi replicate 1


text: live

text: Generic

text: Drosophila melanogaster

text: S2 cell line

text: Fcp1-RNAi replicate 2


text: Stanford University

text: live

text: Generic

characteristic: description

text: Homo sapiens

text: Majeti 2012 - AML Leukemia and T cell Exomes SU043


text: Stanford University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

text: Majeti 2012 - AML Leukemia and T cell Exomes SU048


text: Texas Children's Hospital

text: live

text: Generic

characteristic: SRA accession

text: 16S rRNA gene sequences generated from mucosal scrapings collected from a C57BL/6J juvenile male mouse fed a high cellulose diet (12.5% cellulose) for 50 days (80 days postnatal).

text: uncultured bacterium

text: Microbiomic effects of cellulose supplementation in mice


characteristic: External Id

text: Stanford University

text: live

text: Generic

text: RNAseq data sets from all samples that have exome data in accession SRA054179.

text: Homo sapiens

text: Majeti 2012 - AML Leukemia Transcriptomes (RNAseq - All Samples)


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC center name

text: live

text: Generic

text: Neisseria meningitidis 63006

text: Neisseria meningitidis 63006


text: NCBI

characteristic: INSDC first public

text: live

text: Generic

text: Nannochloropsis oceanica

text: General Sample for Nannochloropsis oceanica (taxid:145522)


HF1b1 (HFR10)

text: Texas Children's Hospital

characteristic: INSDC last update

text: live

text: Generic

text: 16S rRNA gene sequences generated from mucosal scrapings collected from a C57BL/6J juvenile male mouse fed a high cellulose diet (12.5% cellulose) for 50 days, followed by a low cellulose diet (2.5% fiber) for 10 days (90 days postnatal).

text: uncultured bacterium


text: Plant Industry, CSIRO

text: live

characteristic: INSDC status

text: Generic

text: 'Golden Promise'

characteristic: cultivar

text: Hordeum vulgare

text: 1-5 day post anthesis grains

text: 1-5 day post anthesis grains

characteristic: tissue

text: 1-5 DPA small RNA


text: Plant Industry, CSIRO

text: live

text: Generic

text: 'Golden Promise'

text: Hordeum vulgare

text: 6-10 day post anthesis grains

text: 6-10 day post anthesis grains

text: 6-10 DPA small RNA


text: Plant Industry, CSIRO

text: live

text: Generic

text: 'Golden Promise'

text: Hordeum vulgare

text: 11-15 day post anthesis grains

text: 11-15 day post anthesis grains

text: 11-15 DPA small RNA


text: Plant Industry, CSIRO

text: live

text: Generic

text: 'Golden Promise'

text: Hordeum vulgare

text: 1-5 day post anthesis grains

text: 1-5 day post anthesis grains

text: 1-5 DPA degradome


text: Plant Industry, CSIRO

text: live

text: Generic

text: 'Golden Promise'

text: Hordeum vulgare

text: 6-10 day post anthesis grains

text: 6-10 day post anthesis grains

text: 6-10 DPA degradome


text: Plant Industry, CSIRO

text: live

text: Generic

text: 'Golden Promise'

text: Hordeum vulgare

text: 11-15 day post anthesis grains

text: 11-15 day post anthesis grains

text: 11-15 DPA degradome


HF1b2 (HFR10)

text: Texas Children's Hospital

text: live

text: Generic

text: uncultured bacterium


HF1b3 (HFR10)

text: Texas Children's Hospital

text: live

text: Generic

text: uncultured bacterium


HF11b1 (HFR10)

text: Texas Children's Hospital

text: live

text: Generic

text: uncultured bacterium


HF11b2 (HFR10)

text: Texas Children's Hospital

text: live

text: Generic

text: uncultured bacterium


text: Texas Children's Hospital

text: live

text: Generic

text: 16S rRNA gene sequences generated from mucosal scrapings collected from a C57BL/6J juvenile male mouse fed a low cellulose diet (2.5% cellulose) for 50 or 60 days (80 or 90 days postnatal).

text: uncultured bacterium


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: late embryonic stage

characteristic: developmental stage

text: se/e

characteristic: genotype

text: Drosophila melanogaster

text: female

characteristic: sex

text: Kc WT Early S-Phase Repliseq Rep1

text: embryo-derived cell-line

text: Kc WT Early S-Phase Repliseq Rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: Kc WT Repliseq Rep1

text: embryo-derived cell-line

text: Kc WT Mid S-Phase Repliseq Rep1 extraction2_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

characteristic: organism

text: female

text: Kc WT Late S-Phase Repliseq Rep1

text: embryo-derived cell-line

text: Kc WT Late S-Phase Repliseq Rep1 extraction3_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: Kc WT Early S-Phase Repliseq Rep2

text: embryo-derived cell-line

text: Kc WT Early S-Phase Repliseq Rep2 extraction4_seq1 aliquote 1

characteristic: title


text: live

text: Generic

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: Kc WT Mid S-Phase Repliseq Rep2

text: embryo-derived cell-line

text: Kc WT Mid S-Phase Repliseq Rep2 extraction5_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: Kc WT Late S-Phase Repliseq Rep2

text: embryo-derived cell-line

text: Kc WT Late S-Phase Repliseq Rep2 extraction6_seq1 aliquote 1


text: Colorado School of Mines

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Nannochloropsis gaditana CCMP526 pooled RNA isolated from cultures of +/- nitrate, logarithmic phase, stationary phase, heat shocked culture (2h at 37ºC), cold treated culture (2h at 4ºC), 12h dark acclimation, and +/- supplemental CO2.

characteristic: description

text: Nannochloropsis gaditana CCMP526

characteristic: strain


characteristic: External Id

text: NCBI

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Tigriopus californicus

text: San Diego or Santa Cruz

text: Illumina samples for Tigriopus californicus (taxid:6832)


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: 7 days

characteristic: age

text: Transgenic A. thaliana Columbia seeds expressing a His6FLAG-tagged version of the ribosomal large subunit protein L18B (35S:HF-RPL18B), were surface sterilized, stratified for three days, and sown on 0.5X Murashige and Skoog media containing 1% (w/v) sucrose and 0.4% phytagel. Seedlings were grown vertically under a 16h day (125 microE m-2 s-1 photosynthetically active radiation)/8h night cycle for seven days as described previously (Branco-Price et al. 2008). Seven-day old seedlings were harvested at the end of the light period.

text: 7 day seedling

characteristic: dev-stage

characteristic: ecotype

text: Columbia-0 35S:HF-RPL18B

characteristic: light intensity

text: Arabidopsis thaliana

text: whole seedlings

characteristic: sample-type

characteristic: substrate

characteristic: temperature

text: General Sample for Arabidopsis thaliana (taxid:3702)


text: NCBI

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: colorectal

characteristic: body site

text: colorectal cancer

characteristic: disease

text: feces

characteristic: isolation-source

text: human gut metagenome

characteristic: organism

text: male

characteristic: sex

text: Homo sapiens

characteristic: specific host

text: gut microbiota 16s rRNA V3 region

characteristic: title


characteristic: External Id

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: 12-year-old tree grafted on wild seedling of the yellow-fleshed cv. Maycrest (Prunus persica (L.) Batsch)

characteristic: comment

text: Maycrest

characteristic: cultivar

text: Italy: Verona, Palazzolo di Sona

characteristic: geo loc name

text: 45.456526 N 10.819987 E

characteristic: lat lon

text: Prunus persica

text: Mixed: Pink, Bloom, Swollen Flower Bud, Swollen Leaf Bud, Half Inch Green

characteristic: tissue-type

text: General Sample for Prunus persica (taxid:3760)


name: 1132881586284 Toxoplasma gondii CtCo5 strain TGCTCO5-BP3KB-A1NB-1-528 Sample

text: J. Craig Venter Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: HMW total gDNA isolated from T. gondii CtCo5 strain tachyzoites

characteristic: description

text: Toxoplasma gondii CtCo5

text: Generic sample from Toxoplasma gondii CtCo5


text: IMBA

text: live

text: Generic

text: neuroblasts

characteristic: cell type

text: cells expresses nuclear GFP marker (UAS-stingerGFP)

characteristic: marker

text: Drosophila melanogaster

characteristic: organism

text: wild type neuroblast

text: late third instar

characteristic: stage

text: larval brain

characteristic: tissue source

text: wild type neuroblast 1


characteristic: External Id

text: IMBA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: neuroblasts

text: Drosophila melanogaster

text: wild type neuroblast

text: late third instar

text: larval brain

text: wild type neuroblast 2 (tech. Repl. 1)

characteristic: title


text: IMBA

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: neuroblasts

text: Drosophila melanogaster

text: wild type neuroblast

text: late third instar

text: larval brain

text: wild type neuroblast 2 (tech. Repl. 2)


text: IMBA

text: live

text: Generic

text: neuroblasts

text: Drosophila melanogaster

text: wild type neuroblast

text: late third instar

text: larval brain

text: wild type neuroblast 3 (tech. Repl. 1)


text: IMBA

text: live

text: Generic

text: neuroblasts

text: Drosophila melanogaster

text: wild type neuroblast

text: late third instar

text: larval brain

text: wild type neuroblast 3 (tech. Repl. 2)


text: IMBA

text: live

text: Generic

text: neuron (differentiated daughter cells)

text: Drosophila melanogaster

text: wild type neuron

text: late third instar

text: larval brain

text: wild type neuron 1 (tech. Repl. 1)


text: IMBA

text: live

text: Generic

text: neuron (differentiated daughter cells)

text: Drosophila melanogaster

text: wild type neuron

text: late third instar

text: larval brain

text: wild type neuron 1 (tech. Repl. 2)


text: IMBA

text: live

text: Generic

text: neuron (differentiated daughter cells)

text: Drosophila melanogaster

text: wild type neuron

text: late third instar

text: larval brain

text: wild type neuron 2


heads

text: Institut Pasteur - Christophe Antoniewski

text: live

text: Generic

text: Hand-dissected heads from adult Drosophila melanogaster

text: Drosophila melanogaster

text: Fly heads


name: Col-0 Adult Plants Infected with Pst(avrPphB) at 5dpi

text: The Salk Institute for Biological Studies

text: live

text: Generic

text: Adult (~5 week old) Col-0 Arabidopsis thaliana plants grown under short day conditions infected with Pst(avrPphB). Tissue was collected 5 days post infection.

text: Arabidopsis thaliana


name: 661101.12947.Genomic DNA.Escherichia coli KTE144_A

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Escherichia coli KTE144

text: Escherichia coli KTE144_A

characteristic: sample id

text: Genomic DNA

characteristic: sample type

text: Other

characteristic: sex

characteristic: strain

text: E. coli KTE144 Genomic DNA sample Escherichia coli KTE144_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE147_A

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: Escherichia coli KTE147

text: Escherichia coli KTE147_A

text: Genomic DNA

text: Other

text: E. coli KTE147 Genomic DNA sample Escherichia coli KTE147_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE146_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE146

characteristic: organism

text: Escherichia coli KTE146_A

text: Genomic DNA

text: Other

text: E. coli KTE146 Genomic DNA sample Escherichia coli KTE146_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE140_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE140

text: Escherichia coli KTE140_A

text: Genomic DNA

text: Other

text: E. coli KTE140 Genomic DNA sample Escherichia coli KTE140_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE123_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE123

text: Escherichia coli KTE123_A

text: Genomic DNA

text: Other

text: E. coli KTE123 Genomic DNA sample Escherichia coli KTE123_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE136_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE136

text: Escherichia coli KTE136_A

text: Genomic DNA

text: Other

text: E. coli KTE136 Genomic DNA sample Escherichia coli KTE136_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE155_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE155

text: Escherichia coli KTE155_A

text: Genomic DNA

text: Other

text: E. coli KTE155 Genomic DNA sample Escherichia coli KTE155_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE141_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE141

text: Escherichia coli KTE141_A

text: Genomic DNA

text: Other

text: E. coli KTE141 Genomic DNA sample Escherichia coli KTE141_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE154_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE154

text: Escherichia coli KTE154_A

text: Genomic DNA

text: Other

text: E. coli KTE154 Genomic DNA sample Escherichia coli KTE154_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE169_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE169

text: Escherichia coli KTE169_A

text: Genomic DNA

text: Other

text: E. coli KTE169 Genomic DNA sample Escherichia coli KTE169_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE121_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE121

text: Escherichia coli KTE121_A

text: Genomic DNA

text: Other

text: E. coli KTE121 Genomic DNA sample Escherichia coli KTE121_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE142_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE142

text: Escherichia coli KTE142_A

text: Genomic DNA

text: Other

text: E. coli KTE142 Genomic DNA sample Escherichia coli KTE142_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE156_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE156

text: Escherichia coli KTE156_A

text: Genomic DNA

text: Other

text: E. coli KTE156 Genomic DNA sample Escherichia coli KTE156_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE143_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE143

text: Escherichia coli KTE143_A

text: Genomic DNA

text: Other

text: E. coli KTE143 Genomic DNA sample Escherichia coli KTE143_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE171_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE171

text: Escherichia coli KTE171_A

text: Genomic DNA

text: Other

text: E. coli KTE171 Genomic DNA sample Escherichia coli KTE171_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE170_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE170

text: Escherichia coli KTE170_A

text: Genomic DNA

text: Other

text: E. coli KTE170 Genomic DNA sample Escherichia coli KTE170_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE165_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE165

text: Escherichia coli KTE165_A

text: Genomic DNA

text: Other

text: E. coli KTE165 Genomic DNA sample Escherichia coli KTE165_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE158_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE158

text: Escherichia coli KTE158_A

text: Genomic DNA

text: Other

text: E. coli KTE158 Genomic DNA sample Escherichia coli KTE158_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE159_A

text: Broad Institute

text: live

text: Generic

text: Escherichia sp. KTE159

text: Escherichia coli KTE159_A

text: Genomic DNA

text: Other

text: E. coli KTE159 Genomic DNA sample Escherichia coli KTE159_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE161_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE161

text: Escherichia coli KTE161_A

text: Genomic DNA

text: Other

text: E. coli KTE161 Genomic DNA sample Escherichia coli KTE161_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE162_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE162

text: Escherichia coli KTE162_A

text: Genomic DNA

text: Other

text: E. coli KTE162 Genomic DNA sample Escherichia coli KTE162_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE149_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE149

text: Escherichia coli KTE149_A

text: Genomic DNA

text: Other

text: E. coli KTE149 Genomic DNA sample Escherichia coli KTE149_A


name: 449331.5482.Genomic DNA.Staphylococcus aureus M0646

text: Broad Institute

text: live

text: Generic

text: Generic

text: Staphylococcus aureus M0646

text: Staphylococcus aureus M0646

text: Genomic DNA

text: Other

text: Staphylococcus aureus M0646


PRJNA173489.Staphylococcus aureus M0374

text: Broad Institute

text: live

text: Generic

text: Generic

text: Staphylococcus aureus M0374

text: Staphylococcus aureus M0374

text: Genomic DNA

text: Other

text: Staphylococcus aureus M0374 Genomic DNA sample Staphylococcus aureus M0374


PRJNA28331.Bacteroides fragilis HMW 616

text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacteroides fragilis HMW 616

text: Bacteroides fragilis HMW 616

characteristic: sample name

text: HMW 616

text: Generic sample from Bacteroides fragilis HMW 616


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Mustela putorius furo

text: Generic sample from Mustela putorius furo


text: University of Arizona

characteristic: INSDC center name

text: live

text: Generic

text: Scaptomyza flava

text: cDNA pool from Scaptomyza flava for 454 run


text: University of Arizona

characteristic: INSDC first public

text: live

text: Generic

text: Scaptomyza flava

text: cDNA of Scaptomyza flava for Illumina profiling run


name: Col-0 Adult Plants Sprayed with 1 mM Salicylic Acid for 5 days

text: The Salk Institute for Biological Studies

characteristic: INSDC last update

text: live

text: Generic

text: Adult (~5 week old) Col-0 Arabidopsis thaliana plants grown under short day conditions sprayed with 1 mM Salicylic Acid (SA). Tissue was collected 5 days after the first spray treatment.

characteristic: description

text: Arabidopsis thaliana


text: Pacific Northwest National Labs

characteristic: INSDC secondary accession

text: live

text: Generic

text: environmental samples

text: River-proximate, post-sterilization time 0

characteristic: title


text: Pacific Northwest National Labs

text: live

text: Generic

characteristic: SRA accession

text: environmental samples

text: River-proximate, post-sterilization time 3months


text: Pacific Northwest National Labs

text: live

text: Generic

text: environmental samples

text: River-proximate, post-sterilization time 6 months


text: Pacific Northwest National Labs

text: live

text: Generic

text: environmental samples

text: River-proximate, post-sterilization time 9months


text: Pacific Northwest National Labs

text: live

text: Generic

text: environmental samples

text: River-proximate, post-sterilization time 12 months


text: Pacific Northwest National Labs

text: live

text: Generic

text: environmental samples

text: River-proximate, post-sterilization time 12 months, untreated


text: Pacific Northwest National Labs

text: live

text: Generic

text: environmental samples

text: Dry lagoon-proximate, post-sterilization time 0


text: Pacific Northwest National Labs

text: live

text: Generic

text: environmental samples

text: Dry lagoon-proximate, post-sterilization time 3 months


text: Pacific Northwest National Labs

text: live

text: Generic

text: environmental samples

text: Dry lagoon-proximate, post-sterilization time 6 months


text: Pacific Northwest National Labs

text: live

text: Generic

text: environmental samples

text: Dry lagoon-proximate, post-sterilization time 9 months


text: Pacific Northwest National Labs

text: live

text: Generic

text: environmental samples

text: Dry lagoon-proximate, post-sterilization time 12 months


text: Pacific Northwest National Labs

text: live

text: Generic

text: environmental samples

text: Dry lagoon-proximate, 12 months, untreated


text: Institute of Molecular and Cell Biology

text: live

text: Generic

text: Callorhinchus milii

text: Illumina sequencing of the elephant shark transcriptome


text: Uppsala University

text: live

text: Generic

text: Ostrich samples from Sahlins struts, Borlange, Sweden. Preserved brain and liver tissues in RNAlater (Qiagen, Hilden, Germany). This sample contains pooled RNA from female liver tissue, individual: 14 and 17

text: Struthio camelus

text: Absence of dosage compensation and the arrested stage of sex chromosome evolution in ostriches: LF2


text: Uppsala University

text: live

text: Generic

text: Ostrich samples from Sahlins struts, Borlange, Sweden. Preserved brain and liver tissues in RNAlater (Qiagen, Hilden, Germany). This sample contains pooled RNA from female liver tissue, individual: 20, 24 and 25

text: Struthio camelus

text: Absence of dosage compensation and the arrested stage of sex chromosome evolution in ostriches: LF3


characteristic: BioProject

text: Beijing Genome Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Approximately 2 ml blood was taken from one wild caught male peregrine falcon at the Abu Dhabi Falcon Hospital, UAE, and the collection date was around October, 2010.

text: Falco

text: Falco peregrinus reads sequenced by BGI


text: Beijing Genome Institute

text: live

text: Generic

text: Generic

text: Approximately 2 ml blood was taken from one wild caught male saker falcon at the Abu Dhabi Falcon Hospital, UAE, and the collection date was around October, 2010.

text: Falco

text: Falco cherrug reads sequenced by BGI


text: Center for Biomedical Informatics, Harvard Medical School

text: live

text: Generic

text: HeLa

characteristic: cell line

characteristic: lentiviral construct

text: Homo sapiens

text: control

text: neg C - KD 1

text: control

characteristic: treatment


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: HeLa

text: Homo sapiens

text: control

text: neg C - KD 2

text: control


text: live

text: Generic

characteristic: NCBI submission package

text: HeLa

text: Homo sapiens

characteristic: organism

text: H2A.Bbd KD

text: Bbd - KD 1

text: H2A.Bbd KD


characteristic: External Id

text: live

text: Generic

text: HeLa

text: Homo sapiens

text: H2A.Bbd KD

text: Bbd - KD 2

text: H2A.Bbd KD


characteristic: INSDC center name

text: live

text: Generic

text: HeLa

text: Homo sapiens

text: H2A.Z KD

text: Z - KD 1

text: H2A.Z KD


characteristic: INSDC first public

text: live

text: Generic

text: HeLa

text: Homo sapiens

text: H2A.Z KD

text: Z - KD 2

text: H2A.Z KD


text: Institute of Human Genetics, CNRS

characteristic: INSDC last update

text: live

text: Generic

text: mating wild-type cells at 2 h post-mixing

characteristic: cell type

text: Tetrahymena thermophila

text: Nuclear run-on RNAs

characteristic: rna subtype


text: Institute of Human Genetics, CNRS

characteristic: INSDC secondary accession

text: live

text: Generic

text: mating wild-type cells at 3 h post-mixing

text: Tetrahymena thermophila

text: Whole RNAs

text: 26-32nt small RNAs

text: WT_3 h

characteristic: title


text: Institute of Human Genetics, CNRS

text: live

text: Generic

characteristic: SRA accession

text: mating nullisomic 4 cells at 3 h post-mixing

text: Tetrahymena thermophila

text: Whole RNAs

text: 26-32nt small RNAs

text: Nulli4_3 h


text: Institute of Human Genetics, CNRS

text: live

text: Generic

text: matingTWI1 KO cells at 3 h post-mixing

text: Tetrahymena thermophila

text: Whole RNAs

text: 26-32nt small RNAs

text: TWI1_KO_3 h


text: Institute of Human Genetics, CNRS

text: live

text: Generic

text: Tetrahymena thermophila

text: Oxidation resistant RNAs

text: 26-32nt small RNAs

text: WT_3 h_Ox


text: Institute of Human Genetics, CNRS

text: live

text: Generic

text: mating wild-type cells at 4.5 h post-mixing

text: Tetrahymena thermophila

text: Oxidation resistant RNAs

text: 26-32nt small RNAs

text: WT_4.5 h_Ox


text: Institute of Human Genetics, CNRS

text: live

text: Generic

text: mating wild-type cells at 6 h post-mixing

text: Tetrahymena thermophila

text: Oxidation resistant RNAs

text: 26-32nt small RNAs

text: WT_6 h_Ox


text: Institute of Human Genetics, CNRS

text: live

text: Generic

text: mating wild-type cells at 8 h post-mixing

text: Tetrahymena thermophila

text: Oxidation resistant RNAs

text: 26-32nt small RNAs

text: WT_8 h_Ox


text: Institute of Human Genetics, CNRS

text: live

text: Generic

text: mating EMA1 KO cells at 3 h post-mixing

text: Tetrahymena thermophila

text: Oxidation resistant RNAs

text: 26-32nt small RNAs

text: EMA1_KO_3 h_Ox


text: Institute of Human Genetics, CNRS

text: live

text: Generic

text: mating EMA1 KO cells at 4.5 h post-mixing

text: Tetrahymena thermophila

text: Oxidation resistant RNAs

text: 26-32nt small RNAs

text: EMA1_KO_4.5 h_Ox


text: Institute of Human Genetics, CNRS

text: live

text: Generic

text: mating EMA1 KO cells at 6 h post-mixing

text: Tetrahymena thermophila

text: Oxidation resistant RNAs

text: 26-32nt small RNAs

text: EMA1_KO_6 h_Ox


text: Institute of Human Genetics, CNRS

text: live

text: Generic

text: mating EMA1 KO cells at 8 h post-mixing

text: Tetrahymena thermophila

text: Oxidation resistant RNAs

text: 26-32nt small RNAs

text: EMA1_KO_8 h_Ox


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Neisseria meningitidis 70030

characteristic: strain

text: Neisseria meningitidis 70030


text: live

text: Generic

text: Neisseria meningitidis 77221

text: Neisseria meningitidis 77221


text: live

text: Generic

text: Neisseria meningitidis 2001212

text: Neisseria meningitidis 2001212


text: live

text: Generic

text: Neisseria meningitidis 2007056

text: Neisseria meningitidis 2007056


text: live

text: Generic

text: Neisseria meningitidis NM3642

text: Neisseria meningitidis NM3642


text: live

text: Generic

text: Neisseria meningitidis NM3652

text: Neisseria meningitidis NM3652


text: live

text: Generic

text: Neisseria meningitidis 69096

text: Neisseria meningitidis 69096


text: live

text: Generic

text: Neisseria meningitidis 97020

text: Neisseria meningitidis 97020


Biosample SAMN01048198

text: Institute for Agricultural and Fisheries Research

text: live

text: Generic

text: Xanthomonas fragariae, causal agent of bacterial angular leaf spot of strawberry

characteristic: description

text: Xanthomonas fragariae LMG 25863

text: LMG 25863

text: Xanthomonas fragariae LMG 25863


text: live

text: Generic

text: Neisseria meningitidis 61103

text: Neisseria meningitidis 61103


text: live

text: Generic

text: Neisseria meningitidis 65014

text: Neisseria meningitidis 65014


text: live

text: Generic

text: Neisseria meningitidis 96023

text: Neisseria meningitidis 96023


text: live

text: Generic

text: Neisseria meningitidis 2004090

text: Neisseria meningitidis 2004090


abdomens

text: Institut Pasteur - Christophe Antoniewski

text: live

text: Generic

text: thoraxes hand-dissected from adult D. melanogaster

text: Drosophila melanogaster

text: Small RNAs from D. melanogaster thoraxes


text: live

text: Generic

text: Neisseria meningitidis 63049

text: Neisseria meningitidis 63049


text: live

text: Generic

text: Neisseria meningitidis 4119

text: Neisseria meningitidis 4119


bodies

text: live

text: Generic

text: hand-dissected thoraxes and abdomens from adult D. melanogaster

text: Drosophila melanogaster

text: Thoraxes and abdomens from D. melanogaster


text: live

text: Generic

text: Neisseria meningitidis 12888

text: Neisseria meningitidis 12888


text: live

text: Generic

text: Neisseria meningitidis 9757

text: Neisseria meningitidis 9757


text: live

text: Generic

text: Neisseria meningitidis 9506

text: Neisseria meningitidis 9506


text: live

text: Generic

text: Neisseria meningitidis NM126

text: Neisseria meningitidis NM126


text: live

text: Generic

text: Neisseria meningitidis NM174

text: Neisseria meningitidis NM174


text: live

text: Generic

text: Neisseria meningitidis M7124

text: Neisseria meningitidis M7124


text: live

text: Generic

text: Neisseria meningitidis M7089

text: Neisseria meningitidis M7089


text: live

text: Generic

text: Neisseria meningitidis NM762

text: Neisseria meningitidis NM762


text: live

text: Generic

text: Neisseria meningitidis NM586

text: Neisseria meningitidis NM586


text: live

text: Generic

text: Neisseria meningitidis NM418

text: Neisseria meningitidis NM418


Control

text: Lanzhou University

text: live

text: Generic

text: Regenerated seedlings were used in the experiments. Plant regeneration of C. bungeana via somatic embryogenesis was performed as described by Wang et al.(Wang J, An L, Wang R, Yang D, Si J, Fu X, et al. Plant regeneration of Chorispora bungeana via somatic embryogenesis. In Vitro Cell Dev Biol Plant 2006;42:148-151.)

text: Chorispora bungeana

text: C. bungeana seedlings were treated at 22 degree (Celsius) for 24 hours


text: live

text: Generic

text: Neisseria meningitidis 97014

text: Neisseria meningitidis 97014


text: MPIPZ

text: live

text: Generic

text: Compartment: Root, genotype:Ler, collection site:Cologne

text: soil metagenome


text: MPIPZ

text: live

text: Generic

text: Compartment: Root, genotype:Sha, collection site:Cologne

text: soil metagenome


text: MPIPZ

text: live

text: Generic

text: Compartment: Soil, genotype:Soil, collection site:Cologne

text: soil metagenome


text: live

text: Generic

text: Neisseria meningitidis 2002038

text: Neisseria meningitidis 2002038


text: live

text: Generic

text: Neisseria meningitidis M13255

text: Neisseria meningitidis M13255


text: live

text: Generic

text: Neisseria meningitidis 63041

text: Neisseria meningitidis 63041


text: live

text: Generic

text: Neisseria meningitidis 70012

text: Neisseria meningitidis 70012


text: live

text: Generic

text: Neisseria meningitidis 2006087

text: Neisseria meningitidis 2006087


text: live

text: Generic

text: Neisseria meningitidis 97021

text: Neisseria meningitidis 97021


text: live

text: Generic

text: Neisseria meningitidis 88050

text: Neisseria meningitidis 88050


text: VIB

text: live

text: Generic

text: Mus musculus

text: Gut microbiota variation in common laboratory mouse strains


text: live

text: Generic

text: Neisseria meningitidis 98080

text: Neisseria meningitidis 98080


text: live

text: Generic

text: Neisseria meningitidis 68094

text: Neisseria meningitidis 68094


text: live

text: Generic

text: Neisseria meningitidis 87255

text: Neisseria meningitidis 87255


MICE-STRAINS-VIB

text: VIB

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: mice gut

characteristic: biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: env package

text: gut

characteristic: feature

text: Belgium

characteristic: geo loc name

text: metagenome

characteristic: investigation type

text: Swiss

characteristic: isolate

text: 50.934153 N 4.045128 E

characteristic: lat lon

text: feces

characteristic: material

text: mouse gut metagenome

characteristic: project name

text: Mus musculus

characteristic: specific host

text: Environmental/Metagenome sample for Mus mulculus (Swiss) gut metagenome


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Neisseria meningitidis NM422

characteristic: organism

text: Neisseria meningitidis NM422


Chilling-stressed

text: Lanzhou University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: description

text: Chorispora bungeana

text: C. bungeana seedlings were treated at 2 degree (Celsius) for 24 hours

characteristic: title


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Clontech, 632460

characteristic: antibody

text: Quiescent B cells

characteristic: cell type

text: Mus musculus

text: Quiescent B cells

text: spleen

characteristic: tissue


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Santa Cruz SC-2025

text: Quiescent B cells

text: Mus musculus

text: Quiescent B cells

text: spleen


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Abcam, ab5408

text: Quiescent B cells

text: Mus musculus

text: Quiescent B cells, lipopolysaccharide (LPS) treatment for 4hrs

text: spleen


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Santa Cruz SC-2025

text: Quiescent B cells

text: Mus musculus

text: spleen


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Abcam, ab5408

text: Quiescent B cells

text: Mus musculus

text: Quiescent B cells, lipopolysaccharide (LPS) and 10058-F4 treatments for 4hrs

text: spleen


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Santa Cruz SC-2025

text: Quiescent B cells

text: Mus musculus

text: spleen


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Clontech, 632460

text: Quiescent B cells

text: Mus musculus

text: spleen


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Clontech, 632460

text: Quiescent B cells

text: Mus musculus

text: spleen


text: University of Texas at Austin

text: live

text: Generic

text: control

characteristic: genotype/variation

text: Danio rerio

text: Zebrafish retina with Id2aMM morpholino treatment, replicate 1

text: retina


text: University of Texas at Austin

text: live

text: Generic

text: control

text: Danio rerio

text: Zebrafish retina with Id2aMM morpholino treatment, replicate 2

text: retina


text: University of Texas at Austin

text: live

text: Generic

text: id2a knockdown

text: Danio rerio

text: Zebrafish retina with id2a morpholino treatment, replicate 1

text: retina


text: University of Texas at Austin

text: live

text: Generic

text: id2a knockdown

text: Danio rerio

text: Zebrafish retina with id2a morpholino treatment, replicate 2

text: retina


text: Computational Biology Section, Bioinformatics and Computational Biosciences Branch (BCBB), NIAID/NIH

text: live

text: Generic

text: HeLa cervical carcinoma cells

characteristic: cell line

text: RPC155 (serum 1900, Bob White lab)

characteristic: chip antibody

text: Homo sapiens

characteristic: starting library amount


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: HeLa cervical carcinoma cells

text: Homo sapiens


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: HeLa cervical carcinoma cells

text: Homo sapiens

text: standard Illumina protocol (1ug)


text: Institute of Human Genetics, CNRS

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: mating wild-type cells at 8 h post-mixing

text: Tetrahymena thermophila

characteristic: organism

text: Whole RNAs

characteristic: rna subtype

text: 26-32nt small RNAs

text: WT_8 h


text: Lieb Lab, Biology, The University of North Carolina at Chapel Hill

text: live

text: Generic

characteristic: SRA accession

text: 2-4 hours after egg laying

characteristic: developmental stage

text: Drosophila melanogaster

text: 2-4 hour embryos

text: Oregon R

characteristic: strain

text: whole embryo

characteristic: title


text: live

text: Generic

text: 6-8 hours after egg laying

text: Drosophila melanogaster

text: 6-8 hour embryos

text: Oregon R

text: whole embryo

characteristic: tissue


text: live

text: Generic

text: 16-18 hours after egg laying

text: Drosophila melanogaster

text: 16-18 hour embryos

text: Oregon R

text: whole embryo


text: live

text: Generic

text: 3rd instar larvae

text: Drosophila melanogaster

text: 3rd instar larval imaginal disc

text: y; cn,bw,sp

text: T3 leg disc


text: live

text: Generic

text: 3rd instar larvae

text: Drosophila melanogaster

text: 3rd instar larval imaginal disc

text: y; cn,bw,sp

text: haltere disc


text: live

text: Generic

text: 3rd instar larvae

text: Drosophila melanogaster

text: 3rd instar larval imaginal disc

text: y; cn,bw,sp

text: wing disc


text: live

text: Generic

text: stage P14 pharate adult

text: Drosophila melanogaster

text: pharate appendage

text: y; cn,bw,sp

text: T3 pharate leg


text: live

text: Generic

text: stage P14 pharate adult

text: Drosophila melanogaster

text: pharate appendage

text: y; cn,bw,sp

text: pharate haltere


text: live

text: Generic

text: stage P14 pharate adult

text: Drosophila melanogaster

text: pharate appendage

text: y; cn,bw,sp

text: pharate wing


text: McKay Lab, Biology, Genetics, The University of North Carolina at Chapel Hill

text: live

text: Generic

text: adult

text: Drosophila melanogaster

text: adult female virgins

text: Oregon R

text: whole adult


text: live

text: Generic

text: adult

text: Drosophila melanogaster

text: adult female virgins

text: y; cn,bw,sp

text: whole adult


text: CNRS

text: live

text: Generic

text: This BAC library was prepared from the genomic DNA of females X. tropicalis of the adiopodoume (Ivory Coast) strain. DNA was prepared from the livers of a dozen of juvenile sib frogs issued from a cross between a gynogenote mother and a founder male. This BAC library was prepared by Amplicon express and is distributed by this company (http://www.genomex.com). It is made of 92.160 clones of 132 kbp mean size, thereby covering 6.7X times the genome (taking in account the 2% of empty or missed clones). Cloning was performed after HindIII digestion at the HindIII site of the vector pECBAC1.

characteristic: description

text: adult

characteristic: dev-stage

text: E.coli DH10B

characteristic: lab-host

text: liver

characteristic: organ

text: Xenopus tropicalis

text: HindIII

text: female

characteristic: sex

text: adiopodoume

text: X. tropicalis XTHR BAC library

text: BAC

characteristic: vector


characteristic: External Id

text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Neisseria meningitidis 97021

text: Neisseria meningitidis 97021


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Neisseria meningitidis 98080

characteristic: organism

text: Neisseria meningitidis 98080


Zea mays poly-A selected RNA

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: SRA accession

text: Whole seedling (above ground only)

text: Zea mays

text: Zea mays B73 poly-A selected RNA Genome Analysis Group

characteristic: title


name: Microbial community of anaerobic digestion

text: INRA

text: live

text: Generic

text: A57:anaerobic sludge of perturbed reactors fed with ethanol, 57 days after inoculation by ethanol-degrading sludge B57:anaerobic sludge of perturbed reactors fed with ethanol, 57 days after inoculation by ethanol-degrading sludge C57:anaerobic sludge of non-perturbed reactors fed with ethanol, 57 days after inoculation by ethanol-degrading sludge D57:anaerobic sludge of non-perturbed reactors fed with ethanol, 57 days after inoculation by ethanol-degrading sludge A82:anaerobic sludge of perturbed reactors fed with milk and wine, 82 days after inoculation by distillery slops-degrading sludge B82:anaerobic sludge of perturbed reactors fed with milk and wine, 82 days after inoculation by distillery slops-degrading sludge C82:anaerobic sludge of non-perturbed reactors fed with milk and wine, 82 days after inoculation by distillery slops-degrading sludge D86:anaerobic sludge of non-perturbed reactors fed with milk and wine, 86 days after inoculation by distillery slops-degrading sludge

characteristic: description

text: bioreactor sludge metagenome

text: anaerobic sludge


text: VIB - KULeuven

text: live

text: Generic

text: Saccharomyces cerevisiae

text: ER7A- Parental strain


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Salmonella enterica subsp. arizonae serovar 41:z4,z23:- str. ATCC BAA-1577

characteristic: sample id

characteristic: sample name

text: genomic dna

characteristic: sample type

text: ATCC BAA-1577

characteristic: strain

text: Generic sample from Salmonella enterica subsp. arizonae str. ATCC BAA-1577


text: live

text: Generic

text: genomic dna

text: Generic sample from Salmonella enterica subsp. enterica serovar Montevideo str. SARB30


text: live

text: Generic

text: Salmonella enterica subsp. enterica serovar Montevideo str. SARB30

text: genomic dna


text: University of Zürich

text: live

text: Generic

text: Arabidopsis thaliana

text: wildtype

characteristic: parental genotype/variation

text: Landsberg erecta (Ler)

characteristic: parental strains

text: seed coat (dissected)

text: seed coat from seeds with embryos at 2-to-4 cells stage

characteristic: stage

text: total amplified RNA, Ler seed coat at 2-4cells embryo stage # SC_2


characteristic: External Id

text: Max Planck Society

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: 13 w.p.c.

characteristic: age

text: cortical plate (CP)

characteristic: germinal zone

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

characteristic: tissue

text: Human CP1


text: Max Planck Society

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 14 w.p.c.

text: cortical plate (CP)

text: Homo sapiens

characteristic: organism

text: Fetal human neocortex

text: Neocortex

text: Human CP2


text: Max Planck Society

text: live

text: Generic

characteristic: SRA accession

text: 14 w.p.c.

text: cortical plate (CP)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human CP3

characteristic: title


text: Max Planck Society

text: live

text: Generic

text: 15 w.p.c.

text: cortical plate (CP)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human CP4


text: Max Planck Society

text: live

text: Generic

text: 16 w.p.c.

text: cortical plate (CP)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human CP5


text: Max Planck Society

text: live

text: Generic

text: 16 w.p.c.

text: cortical plate (CP)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human CP6


text: Max Planck Society

text: live

text: Generic

text: 13 w.p.c.

text: inner subventricular zone (ISVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human ISVZ1


text: Max Planck Society

text: live

text: Generic

text: 14 w.p.c.

text: inner subventricular zone (ISVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human ISVZ2


text: Max Planck Society

text: live

text: Generic

text: 14 w.p.c.

text: inner subventricular zone (ISVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human ISVZ3


text: Max Planck Society

text: live

text: Generic

text: 15 w.p.c.

text: inner subventricular zone (ISVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human ISVZ4


text: Max Planck Society

text: live

text: Generic

text: 16 w.p.c.

text: inner subventricular zone (ISVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human ISVZ5


text: Max Planck Society

text: live

text: Generic

text: 16 w.p.c.

text: inner subventricular zone (ISVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human ISVZ6


text: Max Planck Society

text: live

text: Generic

text: 13 w.p.c.

text: outer subventricular zone (OSVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human OSVZ1


text: Max Planck Society

text: live

text: Generic

text: 14 w.p.c.

text: outer subventricular zone (OSVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human OSVZ2


text: Max Planck Society

text: live

text: Generic

text: 14 w.p.c.

text: outer subventricular zone (OSVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human OSVZ3


text: Max Planck Society

text: live

text: Generic

text: 15 w.p.c.

text: outer subventricular zone (OSVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human OSVZ4


text: Max Planck Society

text: live

text: Generic

text: 16 w.p.c.

text: outer subventricular zone (OSVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human OSVZ5


text: Max Planck Society

text: live

text: Generic

text: 16 w.p.c.

text: outer subventricular zone (OSVZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human OSVZ6


text: Max Planck Society

text: live

text: Generic

text: 13 w.p.c.

text: ventricular zone (VZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human VZ1


text: Max Planck Society

text: live

text: Generic

text: 14 w.p.c.

text: ventricular zone (VZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human VZ2


text: Max Planck Society

text: live

text: Generic

text: 14 w.p.c.

text: ventricular zone (VZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human VZ3


text: Max Planck Society

text: live

text: Generic

text: 15 w.p.c.

text: ventricular zone (VZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human VZ4


text: Max Planck Society

text: live

text: Generic

text: 16 w.p.c.

text: ventricular zone (VZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human VZ5


text: Max Planck Society

text: live

text: Generic

text: 16 w.p.c.

text: ventricular zone (VZ)

text: Homo sapiens

text: Fetal human neocortex

text: Neocortex

text: Human VZ6


text: Max Planck Society

text: live

text: Generic

text: cortical plate (CP)

text: Mus musculus

text: Embryonic mouse neocortex

characteristic: strain

text: Neocortex

text: Mouse CP1


text: Max Planck Society

text: live

text: Generic

text: cortical plate (CP)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse CP2


text: Max Planck Society

text: live

text: Generic

text: cortical plate (CP)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse CP3


text: Max Planck Society

text: live

text: Generic

text: cortical plate (CP)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse CP4


text: Max Planck Society

text: live

text: Generic

text: cortical plate (CP)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse CP5


text: Max Planck Society

text: live

text: Generic

text: subventricular zone (SVZ)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse SVZ1


text: Max Planck Society

text: live

text: Generic

text: subventricular zone (SVZ)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse SVZ2


text: Max Planck Society

text: live

text: Generic

text: subventricular zone (SVZ)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse SVZ3


text: Max Planck Society

text: live

text: Generic

text: subventricular zone (SVZ)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse SVZ4


text: Max Planck Society

text: live

text: Generic

text: subventricular zone (SVZ)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse SVZ5


text: Max Planck Society

text: live

text: Generic

text: ventricular zone (VZ)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse VZ1


text: Max Planck Society

text: live

text: Generic

text: ventricular zone (VZ)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse VZ2


text: Max Planck Society

text: live

text: Generic

text: ventricular zone (VZ)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse VZ3


text: Max Planck Society

text: live

text: Generic

text: ventricular zone (VZ)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse VZ4


text: Max Planck Society

text: live

text: Generic

text: ventricular zone (VZ)

text: Mus musculus

text: Embryonic mouse neocortex

text: Neocortex

text: Mouse VZ5


text: live

text: Generic

characteristic: sample id

characteristic: sample name

text: genomic dna

characteristic: sample type

text: ATCC BAA-1586

text: Generic sample from Salmonella enterica subsp. enterica serovar Miami str. ATCC BAA-1586


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: genomic dna

text: ATCC BAA-1584

text: Generic sample from Salmonella enterica subsp. enterica serovar Paratyphi B str. ATCC BAA-1584


characteristic: INSDC first public

text: live

text: Generic

text: Salmonella enterica subsp. enterica serovar Miami str. ATCC BAA-1586

text: genomic dna

text: ATCC BAA-1586


text: live

text: Generic

text: genomic dna

text: ATCC BAA-1579

text: Generic sample from Salmonella enterica subsp. diarizonae str. ATCC BAA-1579


text: live

text: Generic

text: Salmonella enterica subsp. diarizonae str. ATCC BAA-1579

text: genomic dna

text: ATCC BAA-1579


text: Computational Biology Section, Bioinformatics and Computational Biosciences Branch (BCBB), NIAID/NIH

text: live

text: Generic

characteristic: cell type

text: WT

characteristic: genotype/variation

text: Mus musculus

text: WT RNA-seq rep1


characteristic: INSDC last update

text: live

text: Generic

text: WT

text: Mus musculus

text: WT RNA-seq rep2


characteristic: INSDC secondary accession

text: live

text: Generic

text: Tbx21 KO

text: Mus musculus

text: Tbx21-KO RNA-seq rep1


text: live

characteristic: INSDC status

text: Generic

text: Tbx21 KO

text: Mus musculus

text: Tbx21-KO RNA-seq rep2


text: live

text: Generic

characteristic: NCBI submission model

text: anti-T-bet antibody (sc-21749, Santa Cruz)

characteristic: chip antibody

text: sonication

characteristic: dna fragmentation method

text: WT

text: Mus musculus

text: WT T-bet ChIP-seq


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: H3K4me1 (ab8895, Abcam)

text: MNase to generate approximately 80% mononucleosomes and 20% dinucleosomes

text: WT

text: Mus musculus

characteristic: organism

text: WT H3K4me1 ChIP-seq


text: live

text: Generic

text: H3K4me1 (ab8895, Abcam)

text: Tbx21 KO

text: Mus musculus

characteristic: strain

text: Tbx21-KO H3K4me1 ChIP-seq

characteristic: title


text: live

text: Generic

text: H3K27me3 (07-449, Upstate)

text: WT

text: Mus musculus

text: WT H3K27me3 ChIP-seq


text: live

text: Generic

text: H3K27me3 (07-449, Upstate)

text: Tbx21 KO

text: Mus musculus

text: Tbx21-KO H3K27me3 ChIP-seq


Anopheles dirus A

text: Cleveland Clinic Foundation

text: live

text: Generic

text: Anopheles dirus A

text: Anopheles dirus A


Anopheles dirus A 2

text: Cleveland Clinic Foundation

text: live

text: Generic

text: Anopheles dirus A

text: Anopheles dirus A


Anopheles dirus B

text: Cleveland Clinic Foundation

text: live

text: Generic

text: Anopheles cracens

text: Anopheles dirus B


Anopheles farauti 2

text: Cleveland Clinic Foundation

text: live

text: Generic

text: Field isolate collected from Nale, Papua New Guinea.

characteristic: description

text: Anopheles hinesorum

text: Anopheles farauti 2


Anopheles koliensis ESP001B

characteristic: External Id

text: Cleveland Clinic Foundation

text: live

text: Generic

text: Field isolate collected from Nale, Papua New Guinea

text: Anopheles koliensis

text: Anopheles koliensis


Anopheles punctulatus ITN_PNG18

text: Cleveland Clinic Foundation

characteristic: INSDC center name

text: live

text: Generic

text: Field isolate collected from Peneng, Papua New Guinea.

text: Anopheles punctulatus

text: Anopheles punctulatus


Anopheles punctulatus ITN-NC8

text: Cleveland Clinic Foundation

characteristic: INSDC first public

text: live

text: Generic

text: Field isolate collected from Dimer, Papua New Guinea.

text: Anopheles punctulatus

text: Anopheles punctulatus


Anopheles punctulatus YGF017

text: Cleveland Clinic Foundation

text: live

text: Generic

text: Field isolate collected from Yagaum, Papua New Guinea.

text: Anopheles punctulatus

text: Anopheles punctulatus


Anopheles punctulatus YGG012

text: Cleveland Clinic Foundation

text: live

text: Generic

text: Anopheles punctulatus

text: Anopheles punctulatus


text: Northwest A&F University

text: live

text: Generic

text: Infected with Pytophthora capsici.

text: root

characteristic: organ

text: Capsicum annuum

text: root

characteristic: tissue-type

text: Capsicum annuum cDNA-AFLP fragment related to Phytophthora capsici resistance


text: Seoul National University

characteristic: INSDC last update

text: live

text: Generic

text: Panax ginseng

text: whole plant

text: Panax ginseng var. Chunpoong cDNA library

characteristic: vector


UHRR, Catalog #740000

text: The University of Hong Kong

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: Aglient Technologies Catalog #740000

text: General Sample for Universal Human Reference RNA


text: King Saud University

text: live

text: Generic

characteristic: NCBI submission model

text: Giza 716

characteristic: cultivar

text: SSR enriched library was constructed using genomic DNA isolated from Vicia faba L. variety Giza 716. SSR enriched fragments were used for TA cloning using pGEM Easy cloning kit (Promega, Madison,WI USA) following manufacture's recommended protocol. Transformed bacterial clones were sequenced by ABI capillary sequencer 3130xl using T7 and SP6 primers and sequences were screened for SSR motives. Specific primers flanking SSR motives were designed using Bachprimer3.

text: seedling stage

characteristic: dev-stage

text: leaves

text: Vicia faba

text: hermaphrodite

characteristic: sex

text: Vicia faba Giza 716 SSR enriched library


text: Institute for Agricultural and Fisheries Research (ILVO)

text: live

text: Generic

characteristic: NCBI submission package

text: sequenced AFLP fragments

text: chrysanthemum

characteristic: lab-host

text: Puccinia horiana

characteristic: organism

text: CROPS_Puccinia horiana


text: MPI for terrestrial microbiology

text: live

text: Generic

characteristic: SRA accession

text: Nanoarchaeum equitans

text: Cultured organism

characteristic: strain

text: Nanoarchaeum equitans sRNAs

characteristic: title


name: 661101.12947.Genomic DNA.Escherichia coli KTE145_A

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Escherichia coli KTE145_A

characteristic: collaborator sample id

text: Escherichia coli KTE145

text: Genomic DNA

characteristic: sample type

text: Other

text: E. coli KTE145 Genomic DNA sample Escherichia coli KTE145_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE150_A

text: Broad Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Escherichia coli KTE150_A

text: Escherichia coli KTE150

text: Genomic DNA

text: Other

text: E. coli KTE150 Genomic DNA sample Escherichia coli KTE150_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE133_A

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Escherichia coli KTE133_A

text: Escherichia coli KTE133

text: Genomic DNA

text: Other

text: E. coli KTE133 Genomic DNA sample Escherichia coli KTE133_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE88_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE88_A

text: Escherichia coli KTE88

text: Genomic DNA

text: Other

characteristic: sex

text: E. coli KTE88 Genomic DNA sample Escherichia coli KTE88_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE131_A

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: Escherichia coli KTE131_A

text: Escherichia coli KTE131

text: Genomic DNA

text: Other

text: E. coli KTE131 Genomic DNA sample Escherichia coli KTE131_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE179_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE179_A

text: Escherichia coli KTE179

text: Genomic DNA

text: Other

text: E. coli KTE179 Genomic DNA sample Escherichia coli KTE179_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE124_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE124_A

text: Escherichia coli KTE124

text: Genomic DNA

text: Other

text: E. coli KTE124 Genomic DNA sample Escherichia coli KTE124_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE153_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE153_A

text: Escherichia coli KTE153

text: Genomic DNA

text: Other

text: E. coli KTE153 Genomic DNA sample Escherichia coli KTE153_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE125_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE125

text: Escherichia coli KTE125_A

characteristic: sample id

text: Genomic DNA

text: Other

text: E. coli KTE125 Genomic DNA sample Escherichia coli KTE125_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE180_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE180_A

text: Escherichia coli KTE180

characteristic: organism

text: Genomic DNA

text: Other

text: E. coli KTE180 Genomic DNA sample Escherichia coli KTE180_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE99_A

text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Escherichia coli KTE99_A

text: Escherichia coli KTE99

text: Genomic DNA

text: Other

text: E. coli KTE99 Genomic DNA sample Escherichia coli KTE99_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE122_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE122_A

text: Escherichia coli KTE122

text: Genomic DNA

text: Other

characteristic: strain

text: E. coli KTE122 Genomic DNA sample Escherichia coli KTE122_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE109_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE109_A

text: Escherichia coli KTE109

text: Genomic DNA

text: Other

text: E. coli KTE109 Genomic DNA sample Escherichia coli KTE109_A

characteristic: title


name: 661101.12947.Genomic DNA.Escherichia coli KTE137_A

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE137_A

text: Escherichia coli KTE137

text: Genomic DNA

text: Other

text: E. coli KTE137 Genomic DNA sample Escherichia coli KTE137_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE157_A

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Escherichia coli KTE157_A

text: Escherichia coli KTE157

text: Genomic DNA

text: Other

text: E. coli KTE157 Genomic DNA sample Escherichia coli KTE157_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE168_A

text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Escherichia coli KTE168_A

text: Escherichia coli KTE168

text: Genomic DNA

text: Other

text: E. coli KTE168 Genomic DNA sample Escherichia coli KTE168_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE120_A

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Escherichia coli KTE120_A

text: Escherichia coli KTE120

text: Genomic DNA

text: Other

text: E. coli KTE120 Genomic DNA sample Escherichia coli KTE120_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE112_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE112_A

characteristic: collaborator sample id

text: Escherichia coli KTE112

text: Genomic DNA

text: Other

text: E. coli KTE112 Genomic DNA sample Escherichia coli KTE112_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE139_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE139_A

text: Escherichia coli KTE139

text: Genomic DNA

characteristic: sample type

text: Other

text: E. coli KTE139 Genomic DNA sample Escherichia coli KTE139_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE113_A

text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Escherichia coli KTE113_A

text: Escherichia coli KTE113

text: Genomic DNA

text: Other

text: E. coli KTE113 Genomic DNA sample Escherichia coli KTE113_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE82_A

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Escherichia coli KTE82_A

text: Escherichia coli KTE82

text: Genomic DNA

text: Other

text: E. coli KTE82 Genomic DNA sample Escherichia coli KTE82_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE138_A

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Escherichia coli KTE138_A

text: Escherichia coli KTE138

text: Genomic DNA

text: Other

text: E. coli KTE138 Genomic DNA sample Escherichia coli KTE138_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE97_A

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Escherichia coli KTE97_A

text: Escherichia coli KTE97

text: Genomic DNA

text: Other

text: E. coli KTE97 Genomic DNA sample Escherichia coli KTE97_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE106_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE106_A

text: Escherichia coli KTE106

text: Genomic DNA

text: Other

characteristic: sex

text: E. coli KTE106 Genomic DNA sample Escherichia coli KTE106_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE105_A

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: Escherichia coli KTE105_A

text: Escherichia coli KTE105

text: Genomic DNA

text: Other

text: E. coli KTE105 Genomic DNA sample Escherichia coli KTE105_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE166_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE166_A

text: Escherichia coli KTE166

text: Genomic DNA

text: Other

text: E. coli KTE166 Genomic DNA sample Escherichia coli KTE166_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE94_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE94

text: Escherichia coli KTE94_A

characteristic: sample id

text: Genomic DNA

text: Other

text: E. coli KTE94 Genomic DNA sample Escherichia coli KTE94_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE104_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE104_A

text: Escherichia coli KTE104

characteristic: organism

text: Genomic DNA

text: Other

text: E. coli KTE104 Genomic DNA sample Escherichia coli KTE104_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE232_A

text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Escherichia coli KTE232_A

text: Escherichia coli KTE232

text: Genomic DNA

text: Other

text: E. coli KTE232 Genomic DNA sample Escherichia coli KTE232_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE95_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE95_A

text: Escherichia coli KTE95

text: Genomic DNA

text: Other

characteristic: strain

text: E. coli KTE95 Genomic DNA sample Escherichia coli KTE95_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE167_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE167_A

text: Escherichia coli KTE167

text: Genomic DNA

text: Other

text: E. coli KTE167 Genomic DNA sample Escherichia coli KTE167_A

characteristic: title


name: 661101.12947.Genomic DNA.Escherichia coli KTE129_A

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE129_A

text: Escherichia coli KTE129

text: Genomic DNA

text: Other

text: E. coli KTE129 Genomic DNA sample Escherichia coli KTE129_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE174_A

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Escherichia coli KTE174

text: Escherichia coli KTE174_A

text: Genomic DNA

text: Other

text: E. coli KTE174 Genomic DNA sample Escherichia coli KTE174_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE117_A

text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Escherichia coli KTE117_A

text: Escherichia coli KTE117

text: Genomic DNA

text: Other

text: E. coli KTE117 Genomic DNA sample Escherichia coli KTE117_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE128_A

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Escherichia coli KTE128_A

text: Escherichia coli KTE128

text: Genomic DNA

text: Other

text: E. coli KTE128 Genomic DNA sample Escherichia coli KTE128_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE160_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE160_A

characteristic: collaborator sample id

text: Escherichia coli KTE160

text: Genomic DNA

text: Other

text: E. coli KTE160 Genomic DNA sample Escherichia coli KTE160_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE163_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE163_A

text: Escherichia coli KTE163

text: Genomic DNA

characteristic: sample type

text: Other

text: E. coli KTE163 Genomic DNA sample Escherichia coli KTE163_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE148_A

text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Escherichia coli KTE148_A

text: Escherichia coli KTE148

text: Genomic DNA

text: Other

text: E. coli KTE148 Genomic DNA sample Escherichia coli KTE148_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE176_A

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Escherichia coli KTE176_A

text: Escherichia coli KTE176

text: Genomic DNA

text: Other

text: E. coli KTE176 Genomic DNA sample Escherichia coli KTE176_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE90_A

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Escherichia coli KTE90_A

text: Escherichia coli KTE90

text: Genomic DNA

text: Other

text: E. coli KTE90 Genomic DNA sample Escherichia coli KTE90_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE85_A

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Escherichia coli KTE85_A

text: Escherichia coli KTE85

text: Genomic DNA

text: Other

text: E. coli KTE85 Genomic DNA sample Escherichia coli KTE85_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE177_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE177_A

text: Escherichia coli KTE177

text: Genomic DNA

text: Other

characteristic: sex

text: E. coli KTE177 Genomic DNA sample Escherichia coli KTE177_A


activated sludge

text: Faculty of Life Science and Technology

text: live

text: Generic

characteristic: NCBI submission package

text: This activated sludge sample was achieved from a wastewater treatment plant. The total RNA was isolated from sludge and rRNA was isolated by gel lanes. Then, SSU rRNA was directly sequenced and amplified using universal primer set, respectively.

characteristic: description

text: activated sludge bacterium GC_R2A_S_1

text: activated sludge in wastewater treatment plant


anaerobic sludge

text: Faculty of Life Science and Technology

text: live

text: Generic

text: This anaerobic sludge sample was achieved from a wastewater treatment plant. The total RNA was isolated from sludge and rRNA was isolated by gel lanes. Then, SSU rRNA was directly sequenced and amplified using bacterial and archaeal universal primer sets, respectively.

text: anaerobic bacterium A104

characteristic: organism

text: anaerobic sludge from a wastewater treatement plant


Embryo transcriptome of Paris polyphlla

text: Institute of Medicinal Plants, Peking Union Medical College

text: live

text: Generic

characteristic: SRA accession

text: Seeds of P. polyphylla var. yunnanensis were harvested from plants growing in Wuding county, Yunnan Province, China in October 2010. The freshly matured seeds were stored for 2 months in wet sands in a temperature-controlled incubator at either 20℃ (warm stratification treatment) or 4℃ (cold stratification treatment).For the construction of the 454-sequencing cDNA library, three embryo samples at different stratification stages (radical just sprout testa, radical growing to length 0.5 and 1.5cm) were respectively excised for RNA extraction.Massive parallel pyrosequencing using the Roche 454-GS FLX Titanium platform was used to generate a substantial sequence dataset for the P. polyphylla embryo. About 369,568 high quality reads were obtained, ranging from 50 to 1146bp with a mean of 219 bp

text: Paris polyphylla var. yunnanensis

text: Embryo transcriptome of Paris polyphylla


MCR RR 2010 with DCNS

text: Marine Science Institute

text: live

text: Generic

text: bacterioplankton 16S rRNA amplicon libraries

text: uncultured bacterium

text: Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich bacterioplankton populations in a tropical reef ecosystem


text: Department of Immunology, Yokohama City University

text: live

text: Generic

text: Myeloid progenitor cell line Tot2 (derived from Irf8 knockout mouse)

characteristic: cell line

text: MSCV transduced

characteristic: culture condition

text: Mus musculus

text: Tot2 cells, MSCV transuced, Day3

text: Tot2, MSCV, Day3, input DNA

text: 3 days

characteristic: treatment period


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: rabbit anti-H3K4me1 antibody (Ab8895, Abcam)

characteristic: chip antibody

text: MSCV transduced

text: Mus musculus

text: Tot2 cells, MSCV transuced, Day3

text: Tot2, MSCV, Day3, anti-H3K4me1

characteristic: title

text: 3 days


characteristic: INSDC first public

text: live

text: Generic

text: MSCV-IRF8 transduced

text: Mus musculus

text: Tot2 cells, MSCV-IRF8 transuced, Day3

text: Tot2, MSCV-IRF8, Day3, input DNA

text: 3 days


characteristic: INSDC last update

text: live

text: Generic

text: MSCV-IRF8 transduced

text: Mus musculus

text: Tot2 cells, MSCV-IRF8 transuced, Day3

text: Tot2, MSCV-IRF8, Day3, anti-H3K4me1

text: 3 days


characteristic: INSDC secondary accession

text: live

text: Generic

text: goat anti-IRF8 antibody (C-19; Santa Cruz Biotechnology)

text: MSCV-IRF8 transduced

text: Mus musculus

text: Tot2 cells, MSCV-IRF8 transuced, Day3

text: Tot2, MSCV-IRF8, Day3, anti-IRF8

text: 3 days


text: Fondazione Edmund Mach

text: live

characteristic: INSDC status

text: Generic

text: Vitis vinifera cv. Pinot Noir leaves of control plants, collected just before Plasmopara viticola inoculation, biological replicate (plant) 1

text: Vitis vinifera

text: V. vinifera cv. Pinot Noir leaves control 1


text: Fondazione Edmund Mach

text: live

text: Generic

characteristic: NCBI submission model

text: Vitis vinifera cv. Pinot Noir leaves of control plants, collected just before Plasmopara viticola inoculation, biological replicate (plant) 2

text: Vitis vinifera

text: V. vinifera cv. Pinot Noir leaves control 2


text: Fondazione Edmund Mach

text: live

text: Generic

text: Vitis vinifera cv. Pinot Noir leaves of control plants, collected just before Plasmopara viticola inoculation, biological replicate (plant) 3

text: Vitis vinifera

text: V. vinifera cv. Pinot Noir leaves control 3


text: Fondazione Edmund Mach

text: live

text: Generic

text: Vitis vinifera cv. Pinot Noir leaves of control plants, collected 24 h after Plasmopara viticola inoculation, biological replicate (plant) 1

text: Vitis vinifera

text: V. vinifera cv. Pinot Noir leaves Plasmopara viticola-inoculated control 1


text: Fondazione Edmund Mach

text: live

text: Generic

text: Vitis vinifera cv. Pinot Noir leaves of control plants, collected 24 h after Plasmopara viticola inoculation, biological replicate (plant) 2

text: Vitis vinifera

text: V. vinifera cv. Pinot Noir leaves Plasmopara viticola-inoculated control 2


text: Fondazione Edmund Mach

text: live

text: Generic

text: Vitis vinifera cv. Pinot Noir leaves of control plants, collected 24 h after Plasmopara viticola inoculation, biological replicate (plant) 3

text: Vitis vinifera

text: V. vinifera cv. Pinot Noir leaves Plasmopara viticola-inoculated control 3


text: Fondazione Edmund Mach

text: live

text: Generic

text: RNA-Seq analysis of T39-treated grapevine leaves, biological replicate 1

text: Vitis vinifera

text: V. vinifera cv. Pinot Noir leaves T39-treated 1


text: Fondazione Edmund Mach

text: live

text: Generic

text: RNA-Seq analysis of T39-treated grapevine leaves, biological replicate 2

text: Vitis vinifera

text: V. vinifera cv. Pinot Noir leaves T39-treated 2


text: Fondazione Edmund Mach

text: live

text: Generic

text: RNA-Seq analysis of T39-treated grapevine leaves, biological replicate 3

text: Vitis vinifera

text: V. vinifera cv. Pinot Noir leaves T39-treated 3


text: VIB - KULeuven

text: live

text: Generic

text: Saccharomyces cerevisiae

text: CBS4C - Parental strain


text: Fondazione Edmund Mach

text: live

text: Generic

text: Vitis vinifera cv. Pinot Noir leaves of plants treated with Trichoderma harzianum T39, collected 24 h after Plasmopara viticola inoculation, biological replicate (plant) 1

text: Vitis vinifera

text: V. vinifera cv. Pinot Noir leaves Plasmopara viticola-inoculated T39-treated 1


text: Fondazione Edmund Mach

text: live

text: Generic

text: Vitis vinifera cv. Pinot Noir leaves of plants treated with Trichoderma harzianum T39, collected 24 h after Plasmopara viticola inoculation, biological replicate (plant) 2

text: Vitis vinifera


text: Fondazione Edmund Mach

text: live

text: Generic

text: Vitis vinifera cv. Pinot Noir leaves of plants treated with Trichoderma harzianum T39, collected 24 h after Plasmopara viticola inoculation, biological replicate (plant) 3

text: Vitis vinifera

text: V. vinifera cv. Pinot Noir leaves Plasmopara viticola-inoculated T39-treated 3


text: VIB - KULeuven

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Selected pool - low glycerol


text: VIB - KULeuven

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Unselected pool


name: Anopheles stephensi male illumina sequence data

text: Virginia Tech

text: live

text: Generic

text: Anopheles stephensi


DIRT Additions_pooled

text: University of Maryland

text: live

text: Generic

text: old growth forest

characteristic: biome

characteristic: collection date

characteristic: depth

text: Soil extracts from HJA DIRT Plots following a microcosm experiment. All samples were pooled and barcoded for single 454 run.

characteristic: elevation

text: USA: Oregon, HJ Andrews Experimental Forest

characteristic: geo loc name

text: A horizon

characteristic: horizon

text: soil

characteristic: isolation-source

text: HJ Andrews DIRT plot

characteristic: label

text: course loamy mixed mesic Typic Hapludands

text: soil metagenome

text: General Sample for Soil bacteria


Anopheles stephensi female illumina

characteristic: External Id

text: Virginia Tech

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Anopheles stephensi

characteristic: organism

text: Anopheles stephensi female illumina sequence data


text: Washington University, Genome Sequencing Center

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: sample id

characteristic: sample name

text: genomic dna

characteristic: sample type

characteristic: strain

text: Generic sample from Salmonella enterica subsp. enterica serovar Muenchen str. SARB32

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Generic

characteristic: biosamplemodel

text: Chrysemys picta bellii

text: genomic dna

text: Generic sample from Chrysemys picta bellii


text: NYU Langone Medical Center

text: live

text: Generic

characteristic: cell type

text: c-Jun, SantaCruz: sc-1694x

characteristic: chip antibody

text: Sonication

characteristic: chromatin preparation method

text: Mus musculus

text: Growing C1C12 myoblasts


characteristic: External Id

text: NYU Langone Medical Center

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Sonication

text: Mus musculus

text: Growing C1C12 myoblasts


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: organism

text: genomic dna

text: ATCC BAA-1578

text: Generic sample from Salmonella enterica subsp. indica str. ATCC BAA-1578


text: Stanford University

text: live

text: Generic

text: Viruses

text: Viral diversity in raw sewage: known and new genotypes, species, genera and families


text: Institute of Animal Science, Chinese Academy of Agricultural Sciences

text: live

text: Generic

text: Total large fragment genomic DNA extracted by embedding method from rumen microbes was prepared for library construction after purification 36-48kb of was recovered by pulsed field electrophoresis and ligated with pcc2FOS vector and transformed into E.coli EP I300. After overnight growth on LB agar plates containing CM at 12.5 ug/ml, white colonies harboring plasmids bearing inserts were collected and used to construct the metagenomic library.

characteristic: description

text: uncultured microorganism

text: Bovine rumen microflora fosmid library

text: FOS

characteristic: vector


text: Genetics and Genomic Sciences, Mount Sinai School of Medicine

text: live

text: Generic

text: CD103+ dendritic cells

text: Mus musculus

text: lung

characteristic: strain

text: lung

characteristic: tissue

text: CD103+ dendritic cells from untreated mice

characteristic: title

text: untreated

characteristic: treatment