text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (CTCC,Z016E0100;TTCTC,Z016E0102;CGTCAA,Z016E0103;AACGCCT,Z016E0104;TGCA,Z016E0109;AGCCC,Z016E0110;CTTCCA,Z016E0111;AATATGC,Z016E0112;ACTA,Z016E0118;GTATT,Z016E0119;GAGATA,Z016E0120;ACGACTAC,Z016E0121;GTCT,Z016E0127;CTGTA,Z016E0128;ATGCCT,Z016E0129;AAGGATGC,Z016E0130;GAAT,Z016E0135;AGCAT,Z016E0136;TATTTTT,Z016E0137;TAGCATGC,Z016E0138;GCGT,Z016E0143;ACTAT,Z016E0144;TAGGAAGC,Z016E0146;TGGC,Z016E0151;GAGAAT,Z016E0152;ATGAAAC,Z016E0153;TAGGCCAT,Z016E0154;CGAT,Z016E0159;CCAGCT,Z016E0160;AAAAGTT,Z016E0161;TGCAAGGA,Z016E0162;CTTGA,Z016E0167;TTCAGA,Z016E0168;GAATTCA,Z016E0169;TGGTACGT,Z016E0170;TCACC,Z016E0175;TAGGAA,Z016E0176;GAACTTC,Z016E0177;TCTCAGTC,Z016E0178;CTAGC,Z016E0184;GCTCTA,Z016E0185;GGACCTA,Z016E0186;CCGGATAT,Z016E0187;ACAAA,Z016E0191;CCACAA,Z016E0192;GTCGATT,Z016E0193;CGCCTTAT,Z016E0194)

text: Zea mays

text: GBS sequencing of NAM plate 628NVAAXX_4


status: PUBLIC

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (CGTCAA,Z010E0002;AACGCCT,Z010E0003;TGCA,Z010E0009;AGCCC,Z010E0010;CTTCCA,Z010E0011;AATATGC,Z010E0012;ACTA,Z010E0017;GTATT,Z010E0018;GAGATA,Z010E0019;GTCT,Z010E0025;CTGTA,Z010E0026;ATGCCT,Z010E0027;TATTTTT,Z010E0035;TAGCATGC,Z010E0036;GCGT,Z010E0041;ACTAT,Z010E0042;TAGGAAGC,Z010E0044;TGGC,Z010E0049;GAGAAT,Z010E0050;ATGAAAC,Z010E0051;TAGGCCAT,Z010E0052;CGAT,Z010E0057;CCAGCT,Z010E0058;AAAAGTT,Z010E0059;TGCAAGGA,Z010E0060;CTTGA,Z010E0065;TTCAGA,Z010E0066;GAATTCA,Z010E0067;TGGTACGT,Z010E0068;TCACC,Z010E0073;TAGGAA,Z010E0074;GAACTTC,Z010E0075;TCTCAGTC,Z010E0076;CTAGC,Z010E0081;GCTCTA,Z010E0082;GGACCTA,Z010E0083;CCGGATAT,Z010E0084;CCACAA,Z010E0089;GTCGATT,Z010E0090)

characteristic: description

text: Zea mays

characteristic: organism

text: GBS sequencing of NAM plate 628NVAAXX_6

characteristic: title


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (CTCC,Z010E0004;TTCTC,Z010E0006;CGTCAA,Z010E0007;AACGCCT,Z010E0008;TGCA,Z010E0013;AGCCC,Z010E0014;CTTCCA,Z010E0015;AATATGC,Z010E0016;ACTA,Z010E0021;GTATT,Z010E0022;GAGATA,Z010E0023;GTCT,Z010E0029;CTGTA,Z010E0030;ATGCCT,Z010E0031;AAGGATGC,Z010E0032;GAAT,Z010E0037;AGCAT,Z010E0038;TATTTTT,Z010E0039;TAGCATGC,Z010E0040;GCGT,Z010E0045;ACTAT,Z010E0046;CTTGCTT,Z010E0047;TAGGAAGC,Z010E0048;TGGC,Z010E0053;ATGAAAC,Z010E0055;CGAT,Z010E0061;CCAGCT,Z010E0062;AAAAGTT,Z010E0063;TGCAAGGA,Z010E0064;CTTGA,Z010E0069;TTCAGA,Z010E0070;GAATTCA,Z010E0071;TGGTACGT,Z010E0072;TCACC,Z010E0077;TAGGAA,Z010E0078;TCTCAGTC,Z010E0080;CTAGC,Z010E0085;GCTCTA,Z010E0086;GGACCTA,Z010E0087;CCGGATAT,Z010E0088;ACAAA,Z010E0092;CCACAA,Z010E0093;GTCGATT,Z010E0094;CGCCTTAT,Z010E0095)

text: Zea mays

text: GBS sequencing of NAM plate 628NVAAXX_7


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (CTCC,Z011E0100;TTCTC,Z011E0101;CGTCAA,Z011E0102;AACGCCT,Z011E0103;TGCA,Z011E0108;AGCCC,Z011E0109;CTTCCA,Z011E0110;AATATGC,Z011E0111;ACTA,Z011E0117;GTATT,Z011E0118;ACGACTAC,Z011E0120;GTCT,Z011E0125;ATGCCT,Z011E0127;AAGGATGC,Z011E0128;TATTTTT,Z011E0135;GCGT,Z011E0141;ACTAT,Z011E0142;CTTGCTT,Z011E0143;TAGGAAGC,Z011E0144;TGGC,Z011E0149;GAGAAT,Z011E0150;ATGAAAC,Z011E0151;TAGGCCAT,Z011E0152;CGAT,Z011E0157;CCAGCT,Z011E0158;AAAAGTT,Z011E0159;TGCAAGGA,Z011E0160;CTTGA,Z011E0166;TTCAGA,Z011E0167;GAATTCA,Z011E0168;TGGTACGT,Z011E0169;TCACC,Z011E0174;TCTCAGTC,Z011E0177;CTAGC,Z011E0182;GCTCTA,Z011E0183;GGACCTA,Z011E0184;CCGGATAT,Z011E0185;ACAAA,Z011E0189;GTCGATT,Z011E0191;CGCCTTAT,Z011E0192)

text: Zea mays

text: GBS sequencing of NAM plate 628P9AAXX_1


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (TTCTC,Z014E0097;CGTCAA,Z014E0098;AACGCCT,Z014E0099;TGCA,Z014E0104;AGCCC,Z014E0105;CTTCCA,Z014E0106;AATATGC,Z014E0107;GTATT,Z014E0113;GAGATA,Z014E0114;ACGACTAC,Z014E0115;GTCT,Z014E0120;CTGTA,Z014E0121;ATGCCT,Z014E0122;AAGGATGC,Z014E0123;GAAT,Z014E0128;AGCAT,Z014E0129;TATTTTT,Z014E0130;TAGCATGC,Z014E0131;GCGT,Z014E0136;ACTAT,Z014E0137;CTTGCTT,Z014E0138;TAGGAAGC,Z014E0139;TGGC,Z014E0144;GAGAAT,Z014E0145;ATGAAAC,Z014E0146;TAGGCCAT,Z014E0147;CGAT,Z014E0152;CCAGCT,Z014E0153;AAAAGTT,Z014E0154;TGCAAGGA,Z014E0155;CTTGA,Z014E0160;TTCAGA,Z014E0161;GAATTCA,Z014E0162;TGGTACGT,Z014E0163;TAGGAA,Z014E0169;GAACTTC,Z014E0170;TCTCAGTC,Z014E0172;CTAGC,Z014E0177;GCTCTA,Z014E0178;GGACCTA,Z014E0179;CCGGATAT,Z014E0180;CCACAA,Z014E0185;GTCGATT,Z014E0186)

text: Zea mays

text: GBS sequencing of NAM plate 628P9AAXX_2


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (CTCC,Z014E0100;CGTCAA,Z014E0102;AACGCCT,Z014E0103;TGCA,Z014E0108;AGCCC,Z014E0109;CTTCCA,Z014E0110;AATATGC,Z014E0111;ACTA,Z014E0116;GTATT,Z014E0117;GAGATA,Z014E0118;ACGACTAC,Z014E0119;GTCT,Z014E0124;CTGTA,Z014E0125;ATGCCT,Z014E0126;AAGGATGC,Z014E0127;GAAT,Z014E0132;TATTTTT,Z014E0134;TAGCATGC,Z014E0135;GCGT,Z014E0140;ACTAT,Z014E0141;CTTGCTT,Z014E0142;TAGGAAGC,Z014E0143;TGGC,Z014E0148;GAGAAT,Z014E0149;ATGAAAC,Z014E0150;TAGGCCAT,Z014E0151;CGAT,Z014E0156;CCAGCT,Z014E0157;AAAAGTT,Z014E0158;TGCAAGGA,Z014E0159;CTTGA,Z014E0164;TTCAGA,Z014E0165;GAATTCA,Z014E0166;TCACC,Z014E0173;TAGGAA,Z014E0174;GAACTTC,Z014E0175;TCTCAGTC,Z014E0176;CTAGC,Z014E0181;GCTCTA,Z014E0182;GGACCTA,Z014E0183;CCGGATAT,Z014E0184;CCACAA,Z014E0189;GTCGATT,Z014E0190;CGCCTTAT,Z014E0191)

text: Zea mays

text: GBS sequencing of NAM plate 628P9AAXX_3


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (TGCA,Z015E0008;AGCCC,Z015E0009;CTTCCA,Z015E0010;AATATGC,Z015E0011;ACTA,Z015E0016;GTATT,Z015E0017;GAGATA,Z015E0019;ACGACTAC,Z015E0020;GTCT,Z015E0025;CTGTA,Z015E0026;ATGCCT,Z015E0027;AAGGATGC,Z015E0028;GAAT,Z015E0033;AGCAT,Z015E0034;TATTTTT,Z015E0035;TAGCATGC,Z015E0036;GCGT,Z015E0041;ACTAT,Z015E0042;CTTGCTT,Z015E0043;TAGGAAGC,Z015E0044;TGGC,Z015E0049;GAGAAT,Z015E0050;ATGAAAC,Z015E0051;TAGGCCAT,Z015E0052;CGAT,Z015E0057;CCAGCT,Z015E0058;AAAAGTT,Z015E0059;TGCAAGGA,Z015E0060;CTTGA,Z015E0065;TTCAGA,Z015E0066;GAATTCA,Z015E0067;TGGTACGT,Z015E0068;TCACC,Z015E0073;TAGGAA,Z015E0074;GAACTTC,Z015E0075;TCTCAGTC,Z015E0076;CTAGC,Z015E0081;GCTCTA,Z015E0082;GGACCTA,Z015E0083;CCGGATAT,Z015E0084;CCACAA,Z015E0090;GTCGATT,Z015E0091;CGCCTTAT,Z015E0092)

text: Zea mays

text: GBS sequencing of NAM plate 628P9AAXX_4


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (TGCA,Z015E0012;AGCCC,Z015E0013;CTTCCA,Z015E0014;AATATGC,Z015E0015;ACTA,Z015E0021;GTATT,Z015E0022;GAGATA,Z015E0023;ACGACTAC,Z015E0024;GTCT,Z015E0029;CTGTA,Z015E0030;ATGCCT,Z015E0031;AAGGATGC,Z015E0032;GAAT,Z015E0037;AGCAT,Z015E0038;TATTTTT,Z015E0039;TAGCATGC,Z015E0040;GCGT,Z015E0045;ACTAT,Z015E0046;CTTGCTT,Z015E0047;TAGGAAGC,Z015E0048;TGGC,Z015E0053;GAGAAT,Z015E0054;ATGAAAC,Z015E0055;TAGGCCAT,Z015E0056;CGAT,Z015E0061;CCAGCT,Z015E0062;AAAAGTT,Z015E0063;TGCAAGGA,Z015E0064;CTTGA,Z015E0069;TTCAGA,Z015E0070;GAATTCA,Z015E0071;TGGTACGT,Z015E0072;TCACC,Z015E0077;TAGGAA,Z015E0078;GAACTTC,Z015E0079;TCTCAGTC,Z015E0080;CTAGC,Z015E0085;GCTCTA,Z015E0086;GGACCTA,Z015E0088;CCGGATAT,Z015E0089;GTCGATT,Z015E0095;CGCCTTAT,Z015E0096)

text: Zea mays

text: GBS sequencing of NAM plate 628P9AAXX_5


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (TTCTC,Z015E0097;CGTCAA,Z015E0099;AACGCCT,Z015E0100;TGCA,Z015E0105;AGCCC,Z015E0106;CTTCCA,Z015E0107;AATATGC,Z015E0109;ACTA,Z015E0116;GTATT,Z015E0118;GAGATA,Z015E0119;ACGACTAC,Z015E0120;GTCT,Z015E0127;CTGTA,Z015E0128;ATGCCT,Z015E0129;AAGGATGC,Z015E0130;GAAT,Z015E0135;AGCAT,Z015E0136;TAGCATGC,Z015E0138;GCGT,Z015E0143;ACTAT,Z015E0144;CTTGCTT,Z015E0145;TGGC,Z015E0151;GAGAAT,Z015E0152;ATGAAAC,Z015E0153;TAGGCCAT,Z015E0154;CGAT,Z015E0159;CCAGCT,Z015E0160;AAAAGTT,Z015E0161;TGCAAGGA,Z015E0162;TTCAGA,Z015E0168;GAATTCA,Z015E0169;TGGTACGT,Z015E0170;TCACC,Z015E0175;TAGGAA,Z015E0176;GAACTTC,Z015E0177;TCTCAGTC,Z015E0178;CTAGC,Z015E0183;GCTCTA,Z015E0185;GGACCTA,Z015E0186;CCGGATAT,Z015E0187;GTCGATT,Z015E0193;CGCCTTAT,Z015E0194)

text: Zea mays

text: GBS sequencing of NAM plate 628P9AAXX_6


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 628P9AAXX_7


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (CGTCAA,Z018E0099;AACGCCT,Z018E0100;TGCA,Z018E0105;AGCCC,Z018E0106;CTTCCA,Z018E0107;AATATGC,Z018E0108;ACTA,Z018E0113;GTATT,Z018E0114;GAGATA,Z018E0115;GTCT,Z018E0121;CTGTA,Z018E0122;ATGCCT,Z018E0123;AAGGATGC,Z018E0124;GAAT,Z018E0129;AGCAT,Z018E0130;TATTTTT,Z018E0131;TAGCATGC,Z018E0132;GCGT,Z018E0137;ACTAT,Z018E0138;CTTGCTT,Z018E0139;TAGGAAGC,Z018E0140;TGGC,Z018E0145;GAGAAT,Z018E0146;ATGAAAC,Z018E0147;TAGGCCAT,Z018E0148;CGAT,Z018E0153;CCAGCT,Z018E0154;AAAAGTT,Z018E0155;CTTGA,Z018E0161;TTCAGA,Z018E0162;GAATTCA,Z018E0163;TGGTACGT,Z018E0164;TCACC,Z018E0169;TAGGAA,Z018E0170;GAACTTC,Z018E0171;TCTCAGTC,Z018E0172;CTAGC,Z018E0177;GCTCTA,Z018E0178;GGACCTA,Z018E0179;CCGGATAT,Z018E0180;CCACAA,Z018E0185;CGCCTTAT,Z018E0187)

text: Zea mays

text: GBS sequencing of NAM plate 62P7LAAXX_1


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 62P7LAAXX_2


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 62P7LAAXX_3


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 62P7LAAXX_4


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 62P7LAAXX_5


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 62P7LAAXX_6


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 633Y5AAXX_6


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (TTCTC,Z003E0001;CGTCAA,Z003E0002;AACGCCT,Z003E0003;TGCA,Z003E0008;AGCCC,Z003E0009;CTTCCA,Z003E0010;AATATGC,Z003E0011;ACTA,Z003E0016;GTATT,Z003E0017;GAGATA,Z003E0018;ACGACTAC,Z003E0019;GTCT,Z003E0024;CTGTA,Z003E0026;ATGCCT,Z003E0027;AAGGATGC,Z003E0028;GAAT,Z003E0033;AGCAT,Z003E0034;TATTTTT,Z003E0035;TAGCATGC,Z003E0036;GCGT,Z003E0041;ACTAT,Z003E0042;TAGGAAGC,Z003E0044;TGGC,Z003E0049;GAGAAT,Z003E0050;ATGAAAC,Z003E0051;TAGGCCAT,Z003E0052;CGAT,Z003E0057;CCAGCT,Z003E0058;AAAAGTT,Z003E0059;TGCAAGGA,Z003E0061;CTTGA,Z003E0066;TTCAGA,Z003E0067;GAATTCA,Z003E0068;TGGTACGT,Z003E0069;TCACC,Z003E0074;GAACTTC,Z003E0076;TCTCAGTC,Z003E0077;CTAGC,Z003E0082;GGACCTA,Z003E0084;CCGGATAT,Z003E0085;CGCCTTAT,Z003E0092)

text: Zea mays

text: GBS sequencing of NAM plate 705VVAAXX_1


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (CTCC,Z003E0004;TTCTC,Z003E0005;CGTCAA,Z003E0006;AACGCCT,Z003E0007;TGCA,Z003E0012;AGCCC,Z003E0013;CTTCCA,Z003E0014;AATATGC,Z003E0015;ACTA,Z003E0020;ACGACTAC,Z003E0023;CTGTA,Z003E0030;ATGCCT,Z003E0031;AAGGATGC,Z003E0032;GAAT,Z003E0037;AGCAT,Z003E0038;TATTTTT,Z003E0039;TAGCATGC,Z003E0040;GCGT,Z003E0045;ACTAT,Z003E0046;CTTGCTT,Z003E0047;TAGGAAGC,Z003E0048;TGGC,Z003E0053;GAGAAT,Z003E0054;ATGAAAC,Z003E0055;TAGGCCAT,Z003E0056;CGAT,Z003E0062;CCAGCT,Z003E0063;AAAAGTT,Z003E0064;TGCAAGGA,Z003E0065;TTCAGA,Z003E0071;GAATTCA,Z003E0072;TCTCAGTC,Z003E0081;GCTCTA,Z003E0087;GGACCTA,Z003E0088;CCGGATAT,Z003E0089;CCACAA,Z003E0094;GTCGATT,Z003E0095;CGCCTTAT,Z003E0096)

text: Zea mays

text: GBS sequencing of NAM plate 705VVAAXX_2


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (TTCTC,Z003E0097;CGTCAA,Z003E0098;TGCA,Z003E0104;AGCCC,Z003E0105;CTTCCA,Z003E0106;AATATGC,Z003E0107;ACTA,Z003E0112;GTATT,Z003E0113;GAGATA,Z003E0114;ACGACTAC,Z003E0115;GTCT,Z003E0120;CTGTA,Z003E0121;ATGCCT,Z003E0122;AAGGATGC,Z003E0123;GAAT,Z003E0128;AGCAT,Z003E0129;TATTTTT,Z003E0130;TAGCATGC,Z003E0131;GCGT,Z003E0136;ACTAT,Z003E0137;CTTGCTT,Z003E0138;TAGGAAGC,Z003E0139;TGGC,Z003E0144;GAGAAT,Z003E0145;ATGAAAC,Z003E0146;TAGGCCAT,Z003E0147;CGAT,Z003E0152;CCAGCT,Z003E0153;AAAAGTT,Z003E0154;TGCAAGGA,Z003E0155;CTTGA,Z003E0160;TTCAGA,Z003E0161;GAATTCA,Z003E0163;TGGTACGT,Z003E0164;TCACC,Z003E0169;TAGGAA,Z003E0171;GAACTTC,Z003E0172;TCTCAGTC,Z003E0173;CTAGC,Z003E0178;GCTCTA,Z003E0179;GGACCTA,Z003E0180;CCGGATAT,Z003E0181;CCACAA,Z003E0186;GTCGATT,Z003E0187;CGCCTTAT,Z003E0188)

text: Zea mays

text: GBS sequencing of NAM plate 705VVAAXX_3


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (CTCC,Z003E0100;TTCTC,Z003E0101;CGTCAA,Z003E0102;AACGCCT,Z003E0103;AGCCC,Z003E0109;CTTCCA,Z003E0110;AATATGC,Z003E0111;ACTA,Z003E0116;GTATT,Z003E0117;GAGATA,Z003E0118;ACGACTAC,Z003E0119;GTCT,Z003E0124;CTGTA,Z003E0125;ATGCCT,Z003E0126;AAGGATGC,Z003E0127;GAAT,Z003E0132;AGCAT,Z003E0133;TATTTTT,Z003E0134;TAGCATGC,Z003E0135;GCGT,Z003E0140;ACTAT,Z003E0141;CTTGCTT,Z003E0142;TAGGAAGC,Z003E0143;TGGC,Z003E0148;GAGAAT,Z003E0149;CGAT,Z003E0156;CCAGCT,Z003E0157;TGCAAGGA,Z003E0159;CTTGA,Z003E0165;TTCAGA,Z003E0166;GAATTCA,Z003E0167;TGGTACGT,Z003E0168;TCACC,Z003E0174;TAGGAA,Z003E0175;GAACTTC,Z003E0176;CTAGC,Z003E0182;GCTCTA,Z003E0183;GGACCTA,Z003E0184;CCGGATAT,Z003E0185;ACAAA,Z003E0189;GTCGATT,Z003E0191)

text: Zea mays

text: GBS sequencing of NAM plate 705VVAAXX_4


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (TTCTC,Z004E0001;CGTCAA,Z004E0002;AACGCCT,Z004E0003;TGCA,Z004E0008;AGCCC,Z004E0009;CTTCCA,Z004E0010;AATATGC,Z004E0011;ACTA,Z004E0016;GTATT,Z004E0017;GAGATA,Z004E0018;ACGACTAC,Z004E0019;GTCT,Z004E0024;CTGTA,Z004E0025;ATGCCT,Z004E0026;AAGGATGC,Z004E0027;GAAT,Z004E0032;AGCAT,Z004E0033;TATTTTT,Z004E0034;TAGCATGC,Z004E0035;GCGT,Z004E0040;ACTAT,Z004E0041;CTTGCTT,Z004E0042;TAGGAAGC,Z004E0043;TGGC,Z004E0048;GAGAAT,Z004E0049;ATGAAAC,Z004E0050;TAGGCCAT,Z004E0051;CGAT,Z004E0057;CCAGCT,Z004E0058;AAAAGTT,Z004E0059;TGCAAGGA,Z004E0060;CTTGA,Z004E0065;TTCAGA,Z004E0066;GAATTCA,Z004E0067;TGGTACGT,Z004E0068;TCACC,Z004E0073;TAGGAA,Z004E0074;GAACTTC,Z004E0075;TCTCAGTC,Z004E0076;CTAGC,Z004E0081;GCTCTA,Z004E0082;GGACCTA,Z004E0083;CCGGATAT,Z004E0084;CCACAA,Z004E0089;CGCCTTAT,Z004E0091)

text: Zea mays

text: GBS sequencing of NAM plate 705VVAAXX_5


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 705VVAAXX_6


text: Cornell University

text: live

text: Generic

text: Mapping between GBS barcodes and samples. The restriction enzyme used for this plate is ApeKI. (TTCTC,Z004E0096;CGTCAA,Z004E0097;AACGCCT,Z004E0098;TGCA,Z004E0103;AGCCC,Z004E0104;CTTCCA,Z004E0105;AATATGC,Z004E0106;ACTA,Z004E0111;GTATT,Z004E0112;GAGATA,Z004E0113;ACGACTAC,Z004E0114;GTCT,Z004E0120;CTGTA,Z004E0121;ATGCCT,Z004E0122;AAGGATGC,Z004E0123;GAAT,Z004E0128;AGCAT,Z004E0129;TATTTTT,Z004E0130;TAGCATGC,Z004E0131;GCGT,Z004E0136;ACTAT,Z004E0137;CTTGCTT,Z004E0138;TAGGAAGC,Z004E0139;TGGC,Z004E0144;GAGAAT,Z004E0145;ATGAAAC,Z004E0146;TAGGCCAT,Z004E0147;CGAT,Z004E0152;CCAGCT,Z004E0153;AAAAGTT,Z004E0154;TGCAAGGA,Z004E0155;CTTGA,Z004E0160;TTCAGA,Z004E0161;GAATTCA,Z004E0162;TGGTACGT,Z004E0163;TCACC,Z004E0168;TAGGAA,Z004E0169;GAACTTC,Z004E0170;TCTCAGTC,Z004E0171;CTAGC,Z004E0176;GCTCTA,Z004E0177;GGACCTA,Z004E0178;CCGGATAT,Z004E0179;CCACAA,Z004E0184;GTCGATT,Z004E0185;CGCCTTAT,Z004E0186)

text: Zea mays

text: GBS sequencing of NAM plate 705VVAAXX_7


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 70980AAXX_1


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 70980AAXX_2


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 70980AAXX_3


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 70980AAXX_4


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 70980AAXX_5


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 70980AAXX_6


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 70980AAXX_7


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 709G4AAXX_2


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 709G4AAXX_3


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 709G4AAXX_5


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 709G4AAXX_6


text: Cornell University

text: live

text: Generic

text: Zea mays

text: GBS sequencing of NAM plate 709G4AAXX_7


SynOpDH

text: USDA-ARS / Kansas State University

text: live

text: Generic

text: Double Haploid Population - Synthetic W9784 x Opata M85 DH population - Sorrells M, Gustafson J, Somers D, Chao D, Benscher G, et al. (2011) Reconstruction of the synthetic W9784 x Opata M85 wheat reference population. Genome, 2011, 54:(11) 875-882, 10.1139/g11-054

text: Triticum aestivum


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

tag: attribute

characteristic: culture-collection

text: Trichoderma longibrachiatum

text: Trichoderma longibrachiatum ATCC 18648

characteristic: sample number

text: ATCC 18648

characteristic: strain

text: Generic sample from Trichoderma longibrachiatum ATCC 18648


text: National Academy of Agricultural Science

text: live

text: Generic

text: cDNA was inserted between attB1 and attB2 of pDONR222 vector at 5'- and 3'-end with BsrGI.

text: adult

characteristic: dev-stage

text: E.coli DH10B

characteristic: lab-host

text: Camellia japonica

text: BsrGI

text: seed

characteristic: tissue-type

text: Dixie Knight seed cDNA library

text: plasmid

characteristic: vector


characteristic: External Id

text: School of Life Science, Lanzhou University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Suppressive subtraction hybridization was performed using the SuperSMART cDNA Synthesis Kit and the Clontech PCR-Select cDNA Subtraction Kit. For forward SSH, tester cDNAs were prepared from Chorispora bungeana(C.b) regenerated seedlings under -4 C cold stress for 24 h and driver cDNAs derived from C.b regenerated seedlings under normal condition (20 C) .For reverse SSH, normal C.b cDNAs were used as tester, cold stressed as driver. The resulting cDNAs were cloned into pGEM T-easy vector.

text: leaves approximately 4cm long

text: regenerated seedlings

characteristic: organ

text: Chorispora bungeana

text: ECoRI

text: ECoRI

text: Chorispora bungeana cold responsive SSH library

text: Plasmid

text: pGEM-T easy


text: University of New Hampshire

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: mixed

characteristic: cell type

text: The descending aorta from one day-old and six week-old atherosclerosis-susceptible (spontaneous, non-induced) White Carneau (WC) pigeons were used to compare genetic expression between the two developmental ages. Total RNA was extracted (Trizol, Invitrogen), purified, and converted to double-stranded cDNA using the BD SMART PCR cDNA Synthesis Kit (Clontech). Full-length cDNA from each pigeon strain was cut with DpnII (5'GATC) in order to prepare amplicons for comparison by Representational Difference Analysis (RDA). cDNA fragments were subjected to three rounds of PCR-coupled subtractive hybridization and the final difference products were cloned into the BamHI restriction site of the pBluescript SK+ phagemid vector and transformed into XL1 MRF- chemically competent host cells (Stratagene). Transcripts were purified from the host cells by Rolling Circle Amplification (GE Healthcare) and sequenced by the DNAcore facility at the Hubbard Center for Genome Studies, University of New Hampshire. Sequences represent genes that were differentially expressed between the two ages. The WC_C1_1D library contains transcripts that were upregulated at 1 day compared to the corresponding site at 6 weeks of age. The corresponding library (WC_C1_6WK) contains transcripts that were upregulated at six weeks compared to one day.

text: XL1 MRF-

text: Columba livia

text: BAMHI

text: mixed

characteristic: sex

text: White Carneau

text: descending aorta

text: pBluescript SK+


text: University of New Hampshire

text: live

text: Generic

characteristic: NCBI submission package

text: mixed

text: The descending aorta from one day-old and six week-old atherosclerosis-susceptible (spontaneous, non-induced) White Carneau (WC) pigeons were used to compare genetic expression between the two developmental ages. Total RNA was extracted (Trizol, Invitrogen), purified, and converted to double-stranded cDNA using the BD SMART PCR cDNA Synthesis Kit (Clontech). Full-length cDNA from each pigeon strain was cut with DpnII (5'GATC) in order to prepare amplicons for comparison by Representational Difference Analysis (RDA). cDNA fragments were subjected to three rounds of PCR-coupled subtractive hybridization and the final difference products were cloned into the BamHI restriction site of the pBluescript SK+ phagemid vector and transformed into XL1 MRF- chemically competent host cells (Stratagene). Transcripts were purified from the host cells by Rolling Circle Amplification (GE Healthcare) and sequenced by the DNAcore facility at the Hubbard Center for Genome Studies, University of New Hampshire. Sequences represent genes that were differentially expressed between the two ages. The WC_C1_6WK library contains transcripts that were upregulated at 6 weeks compared to the corresponding site at 1 day of age. The corresponding library (WC_C1_1D) contains transcripts that were upregulated at one day compared to six weeks.

characteristic: description

text: XL1 MRF-

text: Columba livia

characteristic: organism

text: BAMHI

text: mixed

text: White Carneau

text: descending aorta

characteristic: title

text: pBluescript SK+


text: University of New Hampshire

text: live

text: Generic

text: mixed

text: The descending aorta from one day-old and six month-old atherosclerosis-susceptible (spontaneous, non-induced) White Carneau (WC) pigeons were used to compare genetic expression between the two developmental ages. Total RNA was extracted (Trizol, Invitrogen), purified, and converted to double-stranded cDNA using the BD SMART PCR cDNA Synthesis Kit (Clontech). Full-length cDNA from each pigeon strain was cut with DpnII (5'GATC) in order to prepare amplicons for comparison by Representational Difference Analysis (RDA). cDNA fragments were subjected to three rounds of PCR-coupled subtractive hybridization and the final difference products were cloned into the BamHI restriction site of the pBluescript SK+ phagemid vector and transformed into XL1 MRF- chemically competent host cells (Stratagene). Transcripts were purified from the host cells by Rolling Circle Amplification (GE Healthcare) and sequenced by the DNAcore facility at the Hubbard Center for Genome Studies, University of New Hampshire. Sequences represent genes that were differentially expressed between the two ages. The WC_C2_1D library contains transcripts that were upregulated at 1 day compared to the corresponding site at 6 months of age. The corresponding library (WC_C2_6MO) contains transcripts that were upregulated at six months compared to one day.

text: XL1 MRF-

text: Columba livia

text: BAMHI

text: mixed

text: White Carneau

characteristic: strain

text: descending aorta

text: pBluescript SK+


text: University of New Hampshire

text: live

text: Generic

text: mixed

text: The descending aorta from one day-old and six month-old atherosclerosis-susceptible (spontaneous, non-induced) White Carneau (WC) pigeons were used to compare genetic expression between the two developmental ages. Total RNA was extracted (Trizol, Invitrogen), purified, and converted to double-stranded cDNA using the BD SMART PCR cDNA Synthesis Kit (Clontech). Full-length cDNA from each pigeon strain was cut with DpnII (5'GATC) in order to prepare amplicons for comparison by Representational Difference Analysis (RDA). cDNA fragments were subjected to three rounds of PCR-coupled subtractive hybridization and the final difference products were cloned into the BamHI restriction site of the pBluescript SK+ phagemid vector and transformed into XL1 MRF- chemically competent host cells (Stratagene). Transcripts were purified from the host cells by Rolling Circle Amplification (GE Healthcare) and sequenced by the DNAcore facility at the Hubbard Center for Genome Studies, University of New Hampshire. Sequences represent genes that were differentially expressed between the two ages. The WC_C2_6MO library contains transcripts that were upregulated at 6 months compared to the corresponding site at 1 day of age. The corresponding library (WC_C2_1D) contains transcripts that were upregulated at one day compared to six months.

text: XL1 MRF-

characteristic: lab-host

text: Columba livia

text: BAMHI

text: mixed

text: White Carneau

text: descending aorta

text: pBluescript SK+


text: University of New Hampshire

text: live

text: Generic

text: mixed

text: The descending aorta from six week-old and six month-old atherosclerosis-susceptible (spontaneous, non-induced) White Carneau (WC) pigeons were used to compare genetic expression between the two developmental ages. Total RNA was extracted (Trizol, Invitrogen), purified, and converted to double-stranded cDNA using the BD SMART PCR cDNA Synthesis Kit (Clontech). Full-length cDNA from each pigeon strain was cut with DpnII (5'GATC) in order to prepare amplicons for comparison by Representational Difference Analysis (RDA). cDNA fragments were subjected to three rounds of PCR-coupled subtractive hybridization and the final difference products were cloned into the BamHI restriction site of the pBluescript SK+ phagemid vector and transformed into XL1 MRF- chemically competent host cells (Stratagene). Transcripts were purified from the host cells by Rolling Circle Amplification (GE Healthcare) and sequenced by the DNAcore facility at the Hubbard Center for Genome Studies, University of New Hampshire. Sequences represent genes that were differentially expressed between the two ages. The WC_C3_6MO library contains transcripts that were upregulated at 6 months compared to the corresponding site at 6 weeks of age. The corresponding library (WC_C3_6WK) contains transcripts that were upregulated at 6 weeks compared to 6 months.

text: XL1 MRF-

text: Columba livia

text: BAMHI

text: mixed

text: White Carneau

text: descending aorta

characteristic: tissue-type

text: pBluescript SK+


text: University of New Hampshire

text: live

text: Generic

text: mixed

text: The descending aorta from six week-old and six month-old atherosclerosis-susceptible (spontaneous, non-induced) White Carneau (WC) pigeons were used to compare genetic expression between the two developmental ages. Total RNA was extracted (Trizol, Invitrogen), purified, and converted to double-stranded cDNA using the BD SMART PCR cDNA Synthesis Kit (Clontech). Full-length cDNA from each pigeon strain was cut with DpnII (5'GATC) in order to prepare amplicons for comparison by Representational Difference Analysis (RDA). cDNA fragments were subjected to three rounds of PCR-coupled subtractive hybridization and the final difference products were cloned into the BamHI restriction site of the pBluescript SK+ phagemid vector and transformed into XL1 MRF- chemically competent host cells (Stratagene). Transcripts were purified from the host cells by Rolling Circle Amplification (GE Healthcare) and sequenced by the DNAcore facility at the Hubbard Center for Genome Studies, University of New Hampshire. Sequences represent genes that were differentially expressed between the two ages. The WC_C3_6WK library contains transcripts that were upregulated at 6 weeks compared to the corresponding site at 6 months of age. The corresponding library (WC_C3_6MO) contains transcripts that were upregulated at 6 months compared to 6 weeks.

text: XL1 MRF-

text: Columba livia

text: BAMHI

text: mixed

text: White Carneau

text: descending aorta

text: pBluescript SK+

characteristic: vector


characteristic: External Id

text: Iowa State University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Oesophagostomum dentatum


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Sulfobacillus acidophilus DSM 10332

text: Sulfobacillus acidophilus DSM 10332

text: DSM 10332

text: Generic sample from Sulfobacillus acidophilus DSM 10332


text: UC San Diego

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Small RNA sequencing of regenerating limbs of the mexican axolotl Abystoma Mexicanum. This sample = Front leg, day 0

text: Ambystoma mexicanum

text: Regenerating Limb Bud - Front Leg - Day 0


text: UC San Diego

text: live

text: Generic

characteristic: NCBI submission model

text: Ambystoma mexicanum

text: Regenerating Limb Bud - Front Leg - Day 4


text: UC San Diego

text: live

text: Generic

text: Ambystoma mexicanum

text: Regenerating Limb Bud - Front Leg - Day 21


text: UC San Diego

text: live

text: Generic

text: Ambystoma mexicanum

text: Regenerating Limb Bud - Hind Leg - Day 0


text: Michael Smith Labs, University of British Columbia

text: live

text: Generic

text: Lodgepole pine (P. contorta clone ID PLI 144) saplings were maintained outdoors at the University of British Columbia (Hall et al., 2011). For RNA extractions, four 2 year old saplings of each species were moved into the greenhouse at the University of British Columbia and were maintained at 24C and 16 hr light per day for 2 weeks prior to induction of defense gene expression. For induction, the stem of each tree was wounded with a razor blade and the aerial portion of the tree was sprayed with 50 ml of 0.1% methyl jasmonate. One quarter of the stem (combined bark and xylem) of each tree was harvested 2h, 6h, 24h and 48 h following treatment and the four time points from each individual were pooled prior to RNA extraction).

text: Pinus contorta

text: Lodgepole pine bark and xylem from leader and internodes of a mechanically wounded and methyl jasmonate sprayed tree


text: UC San Diego

text: live

text: Generic

text: Ambystoma mexicanum

text: Regenerating Limb Bud - Hind Leg - Day 4


text: UC San Diego

text: live

text: Generic

text: Ambystoma mexicanum

text: Regenerating Limb Bud - Hind Leg - Day 21


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Rikenella microfusus DSM 15922

text: Rikenella microfusus DSM 15922

text: DSM 15922

text: Generic sample from Rikenella microfusus DSM 15922


text: live

text: Generic

text: Rubrobacter radiotolerans DSM 5868

text: Rubrobacter radiotolerans DSM 5868

text: DSM 5868

text: Generic sample from Rubrobacter radiotolerans DSM 5868


text: live

text: Generic

text: Pontibacter actiniarum DSM 19842

text: Pontibacter actiniarum DSM 19842

text: DSM 19842

text: Generic sample from Pontibacter actiniarum DSM 19842


text: Leibniz Institute for Age Research - Fritz Lipmann Institute

text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: CCMP1516


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: 92E


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: 92A


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: NZEH


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: L


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: 12-1


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: EH2


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: M219


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: B11


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: B39


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: M217


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: Van556


text: live

text: Generic

text: Emiliania huxleyi

text: Emiliania huxleyi, strain: 92F


Ettlia oleoabundans

text: Yale University

text: live

text: Generic

text: Ettlia oleoabundans

text: Ettlia oleoabundans (Neochloris oleoabundans) nitrogen deficient


text: Shivdasani, Dana Farber Cancer Institute

text: live

text: Generic

text: Bethyl BL3194, lotA300-691A-1

characteristic: antibody

text: Mus musculus

text: CDX2 ChIP-Seq in WT mouse villus cells

text: 129xC57BL6 mixed background

text: Mouse villus

characteristic: tissue

text: CDX2 ChIP-Seq in WT mouse villus cells

text: ChIP DNA

characteristic: type


text: live

text: Generic

characteristic: NCBI submission package

text: Bethyl BL3194, lotA300-691A-1

text: Mus musculus

characteristic: organism

text: CDX2 ChIP-Seq in WT mouse villus cells

text: 129xC57BL6 mixed background

text: Mouse villus

text: CDX2 ChIP-Seq in WT mouse villus cells-2

text: ChIP DNA


text: live

text: Generic

text: Bethyl BL3194, lotA300-691A-1

text: Mus musculus

text: CDX2 ChIP-Seq in Hnf4a KO mouse villus cells

text: 129xC57BL6 mixed background

characteristic: strain

text: Mouse villus

characteristic: title

text: ChIP DNA


text: Verzi, Genetics, Rutgers, the State University of New Jersey

text: live

text: Generic

text: HNF4α c-19 (Santa Cruz 6556, lot c1810)

text: Mus musculus

text: Hnf4a ChIP-Seq in WT mouse villus cells

text: 129xC57BL6 mixed background

text: Mouse villus

text: Hnf4a ChIP-Seq in WT mouse villus cells

text: ChIP DNA


text: live

text: Generic

text: HNF4α c-19 (Santa Cruz 6556, lot c1810)

text: Mus musculus

text: Hnf4a ChIP-Seq in Cdx2 KO mouse villus cells

text: 129xC57BL6 mixed background

text: Mouse villus

text: ChIP DNA


text: live

text: Generic

text: Millipore 07-030, lots DAM1570816 and DAM1724042

text: Mus musculus

text: H3K4me2 ChIP-Seq in WT mouse villus cells

text: 129xC57BL6 mixed background

text: Mouse villus

text: ChIP DNA


text: live

text: Generic

text: Mus musculus

text: H3K4me2 ChIP-Seq in Cdx2 KO mouse villus cells

text: 129xC57BL6 mixed background

text: Mouse villus

text: ChIP DNA


text: live

text: Generic

text: Mus musculus

text: H3K4me2 ChIP-Seq in Hnf4a KO mouse villus cells

text: 129xC57BL6 mixed background

text: Mouse villus

text: ChIP DNA


text: live

text: Generic

text: Mus musculus

text: H3K4me2 ChIP-Seq in Cdx2-Hnf4a D KO mouse villus cells

text: 129xC57BL6 mixed background

text: Mouse villus

text: H3K4me2 ChIP-Seq in Cdx2-Cdx1 DKO mouse villus cells

text: ChIP DNA


text: live

text: Generic

text: Millipore 07-030, lots DAM1570816 and DAM1724043

text: Mus musculus

text: 129xC57BL6 mixed background

text: Mouse villus

text: ChIP DNA


text: live

text: Generic

text: Mus musculus

text: Mouse villus cell input DNA

text: Mouse villus

text: Mouse villus cell input DNA

text: input DNA


A-genome ovule ESTs

text: Brigham Young University

text: live

text: Generic

text: mRNA and cDNA was prepared and normalized according to the modified Matz protocol. This protocol was used in other samples of cotton ESTs normalize the highly-expressed genes and target amplify different portions of the transcript (5', middle, or 3').

characteristic: description

text: Gossypium arboreum

text: A-genome ESTs, Univ. Tx


D-genome ovule ESTs

text: Brigham Young University

text: live

text: Generic

text: Gossypium raimondii

text: D-genome ESTs, Univ. Tx


text: Carnegie Institution for Science

text: live

text: Generic

text: These are the DNA sequences flanking the insertion sites of a collection of P-element transposon insertion mutants of Drosophila melanogaster that were produced by the Drosophila Gene Disruption Project. The transposon mutator is the synthetic construct P{GT1} (Lukacsovich et al (1996) Genetics 157: 727-742; FlyBase ID: FBtp0002720). The mutagenesis screen, the amplification of the flanks by inverse PCR, and the sequencing of the PCR products are described by Bellen et al. 2004 (Genetics 167: 761-781).

text: Drosophila melanogaster

text: BG P-element transposon insertion flanking sequences


text: Thuenen Institute of Forest Genetics

text: live

text: Generic

characteristic: cultivar

text: Populus tremula x Populus tremuloides

text: ATDs flanking genomic sequence, blind approach


characteristic: External Id

text: Thuenen Institute of Forest Genetics

text: live

text: Generic

text: Populus tremula x Populus tremuloides

text: ATDs flanking genomic sequence, variants


text: Thuenen Institute of Forest Genetics

text: live

text: Generic

text: Populus tremula x Populus tremuloides

text: T-DNA flanking genomic sequence


text: Shanxi University

text: live

text: Generic

text: The random shotgun genomic library of O. sinensis was constructed by partially digesting genomic DNA with the restriction enzyme Sau3A I and inserting the recovered fragments into the plasmid pHSG399. Recombinant plasmids were transformed into competent Escherichia coli DH5alpha.

text: Escherichia coli DH5alpha

characteristic: lab-host

text: Ophiocordyceps sinensis

text: A shotgun genomic library of Ophiocordyceps sinensis

text: plasmid


text: HudsonAlpha Genome Sequencing Center

text: live

text: Generic

text: PI446934 (CSIRO G1232)

text: The library was constructed and clones can be obtained from the Arizona Genomics Institute http://www.genome.arizona.edu/orders/

text: Glycine canescens

text: HindIII

text: BAC

characteristic: vector


text: HudsonAlpha Genome Sequencing Center

characteristic: INSDC center name

text: live

text: Generic

text: (CSIRO G1974)

text: Glycine stenophita

text: HindIII

text: BAC


text: University of Florida

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Drosophila melanogaster x Drosophila simulans

characteristic: replicate

text: RNA from interspecific hybrid heads

text: Berlin (BDSC 8522) and C167.4 (BDSC 4736)

text: heads


text: Michael Smith Labs, University of British Columbia

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Jack pine (P. banksiana clone ID PSB 410 1 0) saplings were maintained outdoors at the University of British Columbia (Hall et al., 2011). For RNA extractions, four 2 year old saplings of each species were moved into the greenhouse at the University of British Columbia and were maintained at 24C and 16 hr light per day for 2 weeks prior to induction of defense gene expression. For induction, the stem of each tree was wounded with a razor blade and the aerial portion of the tree was sprayed with 50 ml of 0.1% methyl jasmonate. One quarter of the stem (combined bark and xylem) of each tree was harvested 2h, 6h, 24h and 48 h following treatment and the four time points from each individual were pooled prior to RNA extraction).

text: Pinus banksiana

text: Jack pine bark and xylem from leader and internodes of a mechanically wounded and methyl jasmonate sprayed tree


text: Genetics and Biochemistry Branch, NIDDK

text: live

text: Generic

characteristic: NCBI submission package

text: adult

characteristic: age

text: DMC1 (C-20)

characteristic: chip antibody

text: sc 8973

characteristic: chip antibody catalog number

characteristic: chip antibody lot

text: Santa Cruz

characteristic: chip antibody vendor

text: male

characteristic: gender

text: 9R female x 13R male F1

characteristic: genetic background

text: Hop2 -/-

characteristic: genotype

text: Mus musculus

text: adult testis

text: DMC1 Hop2-/-


characteristic: External Id

text: Genetics and Biochemistry Branch, NIDDK

characteristic: INSDC center name

text: live

text: Generic

text: adult

text: RAD51 (H92)

text: sc 8349

text: Santa Cruz

text: male

text: 9R female x 13R male F1

text: Hop2 -/-

text: Mus musculus

characteristic: organism

text: adult testis

text: RAD51 Hop2-/- rep1

characteristic: title


text: Genetics and Biochemistry Branch, NIDDK

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: adult

text: RAD51 (H92)

text: sc 8349

text: Santa Cruz

text: male

text: 13R female x 9R male F1

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: RAD51 Hop2-/- rep2


text: Genetics and Biochemistry Branch, NIDDK

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: adult

text: IgG

text: male

text: 9R female x 13R male F1

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: IgG control rep1


text: Genetics and Biochemistry Branch, NIDDK

text: live

text: Generic

characteristic: NCBI submission package

text: adult

characteristic: age

text: IgG

characteristic: chip antibody

text: male

text: 13R female x 9R male F1

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: IgG control rep2


text: Genetics and Biochemistry Branch, NIDDK

text: live

text: Generic

text: adult

text: DMC1 (C-20)

text: sc 8973

characteristic: chip antibody catalog number

characteristic: chip antibody lot

text: Santa Cruz

characteristic: chip antibody vendor

text: male

text: 9R female x 13R male F1

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: DMC1 Hop2-/- Klenow (exo-)


text: Genetics and Biochemistry Branch, NIDDK

text: live

text: Generic

text: adult

text: DMC1 (C-20)

text: sc 8973

text: Santa Cruz

text: male

characteristic: gender

text: 9R female x 13R male F1

characteristic: genetic background

text: Hop2 -/-

characteristic: genotype

text: Mus musculus

text: adult testis

text: DMC1 Hop2-/- Klenow (exo-) 12C


characteristic: External Id

text: Genetics and Biochemistry Branch, NIDDK

characteristic: INSDC center name

text: live

text: Generic

text: adult

text: DMC1 (C-20)

text: sc 8973

text: Santa Cruz

text: male

text: 9R female x 13R male F1

text: Mus musculus

characteristic: organism

text: adult testis


text: Genetics and Biochemistry Branch, NIDDK

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: adult

text: DMC1 (C-20)

text: sc 8973

text: Santa Cruz

text: male

text: 9R female x 13R male F1

text: Hop2 -/-

text: Mus musculus

text: adult testis

text: DMC1 Hop2-/- KE

characteristic: title


text: Genetics and Biochemistry Branch, NIDDK

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: adult

text: DMC1 (C-20)

text: sc 8973

text: Santa Cruz

text: male

text: 9R female x 13R male F1

text: Mus musculus

text: adult testis

text: DMC1 KE


text: Genetics and Biochemistry Branch, NIDDK

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: adult

characteristic: age

text: IgG

text: male

text: 9R female x 13R male F1

text: Mus musculus

text: adult testis

text: IgG control KE


text: Faculty of Biological Sciences, University of Leeds

text: live

text: Generic

text: ETO(C20)sc ( lot number F1809)

characteristic: antibody

characteristic: cell type

text: Homo sapiens

text: Kasumi-1 transfection with mismatch siRNA

characteristic: target


text: live

text: Generic

text: ETO(C20)sc ( lot number F1809)

text: Homo sapiens

text: Kasumi-1 transfection with RUNX1/ETO siRNA


text: live

text: Generic

text: ETO (E/S19)

text: t(8;21) AML patient Blast cells

text: Homo sapiens

text: Blast cells from human patient A with t(8;21) AML


text: live

text: Generic

text: ETO (E/S19)

text: t(8;21) AML patient Blast cells

text: Homo sapiens

text: Blast cells from human patient B with t(8;21) AML


text: live

text: Generic

text: ETO (E/S19)

text: t(8;21) AML patient Blast cells

text: Homo sapiens

text: patient A input


text: live

text: Generic

text: t(8;21) AML patient Blast cells

text: Homo sapiens

text: patient B input


text: Research Center for Epigenetic Disease, The University of Tokyo

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Mcm4 distribution in G1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Pol1 or Mcm4 distribution in sml1 mutant in HU


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Anolis carolinensis

characteristic: sample name

text: Generic sample from Anolis carolinensis


characteristic: External Id

text: Broad Institute

text: live

text: BC

characteristic: Isolate, name or label

text: Generic

characteristic: collection date

text: bacterial biomass, Strain OBRC 5-5 isolated from human dental cavity

characteristic: isolation source

text: Lachnoanaerobaculum sp. OBRC5-5

text: Clostridiales bacterium OBRC5-5

characteristic: strain

text: Generic sample from Clostridiales bacterium OBRC5-5


text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Female

characteristic: host sex

text: kidney

text: Oreochromis niloticus

characteristic: organism

text: Generic sample from Oreochromis niloticus

characteristic: title


text: Broad Institute

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

text: Male

text: heart

text: Oreochromis niloticus


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Female

text: skin

text: Oreochromis niloticus

characteristic: sample name


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Male

text: eye

text: Oreochromis niloticus


text: Broad Institute

text: live

text: Generic

text: Generic

text: Male

text: blood

text: Oreochromis niloticus


text: Broad Institute

text: live

text: Generic

text: Generic

text: Female

text: ovary

text: Oreochromis niloticus


text: Broad Institute

text: live

text: Generic

text: Generic

text: Female

text: liver

text: Oreochromis niloticus


text: Broad Institute

text: live

text: Generic

text: Generic

text: Male

text: testis

text: Oreochromis niloticus


text: Broad Institute

text: live

text: Generic

text: Generic

text: female

text: brain

text: Oreochromis niloticus


text: Broad Institute

text: live

text: Generic

text: Generic

text: Female

text: skeletal muscle

text: Oreochromis niloticus


text: Broad Institute

text: live

text: Generic

text: Generic

text: Male

text: whole embryo

text: Oreochromis niloticus


text: Ian D. Hickson lab, Nordea Centre for Healthy Aging, Faculty Of Health Sciences Department of Cellular and Molecular Medicine, University of Copenhagen

text: live

text: Generic

text: 5hmC (Diagenode, AF-110-0016)

characteristic: antibody

text: Homo sapiens

text: IP against hydroxymethylated gDNA using 5hmC mouse monoclonal antibody

text: Cerebellum

characteristic: tissue


text: live

text: Generic

text: 5hmC (Diagenode, AF-110-0016)

text: Homo sapiens

text: Peripheral blood B-lymphocytes from whole Blood


text: live

text: Generic

text: IgG (Diagenode, kch-819-015)

text: Homo sapiens

text: HpaII (New England Biolabs, USA, R0171L)

characteristic: restriction enzyme

text: IP against IgG using a polyclonal IgG antibody

text: Cerebellum


characteristic: INSDC center name

text: live

text: Generic

text: IgG (Diagenode, kch-819-015)

text: Homo sapiens


characteristic: INSDC first public

text: live

text: Generic

text: his-MBD2b (Active Motif, USA, 5502 (Methyl Collector Kit))

text: Homo sapiens

text: IP against hypermethylated gDNA using his-MBD2b antibody

text: Cerebellum


OA clam larvae

text: University of Washington

characteristic: INSDC secondary accession

text: live

text: Generic

text: Ruditapes philippinarum

text: Larvae exposure trials


text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli K-12

characteristic: strain

text: Generic sample from Escherichia coli K-12


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum 348.457

text: Generic sample from Plasmodium falciparum


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 270.1014

characteristic: title


text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum 304.842


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVY-313


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVG-092


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVU-095


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVG-402


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Plasmodium falciparum

text: Plasmodium falciparum XVX-017


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVY-225

characteristic: sample name


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVC-212


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVL-192


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVE-370


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-131


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVD-392


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVG-393


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVF-395


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVF-393


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVG-392


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVH-134


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-367


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVF-144


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVG-418


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVL-134


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-128


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVG-093


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVI-103


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVG-241


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-418


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVG-219


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVH-402


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVE-092


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-212


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-211


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVE-128


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVL-143


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-219


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVE-395


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVJ-192


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVH-395


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVI-130


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVE-125


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVL-114


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVI-395


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVL-111


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVL-110


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVD-128


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVL-212


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVD-321


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVL-150


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVC-291


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVH-092


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVD-125


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVE-402


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVH-198


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVS-430


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVU-281


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVX-009


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVQ-313


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVQ-143


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVY-314


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVV-142


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVU-385


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVS-291


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVU-144


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVE-130


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVS-173


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVY-212


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVS-281


text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum

text: Plasmodium falciparum XVY-144


text: Plant Pathology, University of Kentucky

text: live

text: Generic

text: Colletotrichum graminicola

text: Pre-penetration appressoria, 24h

text: fungus + plant (samples that mapped to fungus only)

characteristic: tissue type


text: Plant Pathology, University of Kentucky

text: live

text: Generic

text: Colletotrichum graminicola

text: Biotrophic phase, 36h


text: Plant Pathology, University of Kentucky

text: live

text: Generic

text: Colletotrichum graminicola

text: Necrotrophic phase, 60h


text: CIBIV, MFPL

text: live

text: Generic

characteristic: developmental stage

text: female

characteristic: gender

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: female E11.5 whole embryo

text: whole embryo

characteristic: tissue

text: wild type replicate 1


text: CIBIV, MFPL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: female

text: Mus musculus

text: female E11.5 whole embryo

text: whole embryo

text: ADAR2-/- replicate 1


text: CIBIV, MFPL

text: live

text: Generic

text: female

text: Mus musculus

characteristic: organism

text: female E11.5 whole embryo

characteristic: strain

text: whole embryo

text: ADAR2-/-/ADAR1-/- replicate 1

characteristic: title


text: CIBIV, MFPL

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: female

text: wild type

text: Mus musculus

text: female E11.5 whole embryo

text: whole embryo

text: wild type replicate 2


text: CIBIV, MFPL

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: female

text: Mus musculus

text: female E11.5 whole embryo

text: whole embryo

text: ADAR2-/- replicate 2


characteristic: External Id

text: CIBIV, MFPL

text: live

text: Generic

text: female

text: Mus musculus

text: female E11.5 whole embryo

text: whole embryo

text: ADAR2-/-/ADAR1-/- replicate 2


text: CIBIV, MFPL

text: live

text: Generic

text: female

text: wild type

text: Mus musculus

text: female E11.5 whole embryo

text: whole embryo

text: wild type replicate 3


text: CIBIV, MFPL

text: live

text: Generic

text: female

text: Mus musculus

text: female E11.5 whole embryo

text: whole embryo

text: ADAR2-/- replicate 3


text: CIBIV, MFPL

text: live

text: Generic

text: female

text: Mus musculus

text: female E11.5 whole embryo

text: whole embryo

text: ADAR2-/-/ADAR1-/- replicate 3


name: PRJNA176378.African coelacanth RNA from Muscle

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Female

characteristic: host sex

text: Muscle

characteristic: isolation source

text: Latimeria chalumnae

text: African coelacanth RNA from Muscle

characteristic: sample name

text: Generic sample from Latimeria chalumnae


text: Broad Institute

text: live

text: Generic

text: Generic

text: human gut metagenome

text: Generic sample from unclassified Bacteria (miscellaneous)


PRJNA193498.Candida albicans 12C

text: Broad Institute

text: live

text: Generic

text: Generic

text: Candida albicans 12C

text: Candida albicans 12C

text: Generic sample from Candida albicans 12C


PRJNA193498.Candida albicans P37039

text: Broad Institute

text: live

text: Generic

text: Generic

text: Candida albicans P37039

text: Candida albicans P37039

text: Generic sample from Candida albicans P37039


text: Broad Institute

text: live

text: Generic

text: Generic

text: Fusobacterium nucleatum CTI-7

text: Fusobacterium nucleatum CTI-7

text: Generic sample from Fusobacterium nucleatum CTI-7


text: Broad Institute

text: live

text: Generic

text: Generic

text: Fusobacterium nucleatum CTI-5

text: Fusobacterium nucleatum CTI-5

text: Generic sample from Fusobacterium nucleatum CTI-5


PRJNA193498.Candida albicans P57072

text: Broad Institute

text: live

text: Generic

text: Generic

text: Candida albicans P57072

text: Candida albicans P57072

text: Generic sample from Candida albicans P57072


text: Broad Institute

text: live

text: Generic

text: Generic

text: Fusobacterium nucleatum CTI-6

text: Fusobacterium nucleatum CTI-6

text: Generic sample from Fusobacterium nucleatum CTI-6


PRJNA193498.Candida albicans P87

text: Broad Institute

text: live

text: Generic

text: Generic

text: Candida albicans P87

text: Candida albicans P87

text: Generic sample from Candida albicans P87


PRJNA193498.Candida albicans GC75

text: Broad Institute

text: live

text: Generic

text: Generic

text: Candida albicans GC75

text: Candida albicans GC75

text: Generic sample from Candida albicans GC75


text: Broad Institute

text: live

text: Generic

text: Generic

text: female

text: Eptesicus fuscus

text: Generic sample from Eptesicus fuscus


text: Broad Institute

text: live

text: Generic

text: Generic

text: Mustela putorius furo

text: Generic sample from Mustela putorius furo


PRJNA167910.Ochotona princeps_07Jul2011

text: Broad Institute

text: live

text: Generic

text: Generic

text: Ochotona princeps

text: Ochotona princeps_07Jul2011

text: Generic sample from Ochotona princeps


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: description

text: DSM 9293

text: Generic sample from Sulfobacillus thermosulfidooxidans DSM 9293


TMEC

text: University of Colorado Boulder

characteristic: INSDC center name

text: live

text: Generic

text: bioreactor metagenome

text: Bacterial community structure in two-chamber MEC (TMEC) fed with WAS


SMEC

text: University of Colorado Boulder

characteristic: INSDC first public

text: live

text: Generic

text: bioreactor metagenome

text: Bacterial community structure in single-chamber MEC (SMEC) fed with WAS


R-WAS

text: University of Colorado Boulder

characteristic: INSDC secondary accession

text: live

text: Generic

text: bioreactor metagenome

text: Bacterial community structure in raw waste activated sludge (R-WAS)


text: live

text: Generic

text: Pelagophyceae sp. CCMP2097

text: Pelagophyceae sp. CCMP2097

characteristic: organism

characteristic: sample number

text: Generic sample from Pelagophyceae sp. CCMP2097


buckwheat transcriptome sequences

text: Anhui Agricultural University

text: live

text: Generic

text: Fagopyrum esculentum

text: Transcriptomic analysis of buckwheat (Fagopyrum esculentum Moench.) seed development and ripening using RNA-seq.

characteristic: title


Macleaya cordata

text: Hunan Agricultural University

characteristic: INSDC last update

text: live

text: Generic

text: Macleaya cordata

text: Macleaya cordata


Macleaya cordata phase1 root

text: Hunan Agricultural University

text: live

characteristic: INSDC status

text: Generic

text: Total RNA was extracted by modified CTAB method 41from 10 different tissues of the Macleaya cordata (Willd.) R. Br., including Phase I(roots, leaves) and Phase II(roots, leaves and shells) which were snap-frozen and stored at -80*C until processing. RNA integrity was confirmed using the Agilent 2100 Bioanalyzer with a minimum integrity number value of 8. Equal amounts of total RNA from each tissue were prepared for cDNA preparation.

text: Macleaya cordata

text: Macleaya cordata phase1 root


name: DGE analysis of Panonychus citri induced by fenpropathrin

text: College of Plant Protection southwest university

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Panonychus citri induced by acaricide, fenpropathrin

text: Panonychus citri

text: fenpropathrin

characteristic: treatment


Macleaya cordata phase 2 leaf

text: Hunan Agricultural University

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Macleaya cordata

text: Macleaya cordata phase 2 leaf


Macleaya cordata phase 2 root

characteristic: External Id

text: Hunan Agricultural University

text: live

text: Generic

text: Macleaya cordata

text: Macleaya cordata phase 2 root


Macleaya cordata phase 2 fruit

text: Hunan Agricultural University

text: live

text: Generic

text: Macleaya cordata

text: Macleaya cordata phase 2 fruit


name: Control of Panonychus citri DGE analysis

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Panonychus citri control sample, no acaricide induction.

text: Panonychus citri

text: Panonychus citri


phase 1 leaf

text: Hunan Agricultural University

text: live

text: Generic

text: Macleaya microcarpa

text: Macleaya microcarpa phase 1 leaf


phase 1 root

text: Hunan Agricultural University

text: live

text: Generic

text: Macleaya microcarpa

text: phase 1 root


phase 2 leaf

text: Hunan Agricultural University

text: live

text: Generic

text: Macleaya microcarpa

text: phase 2 leaf


phase 2 root

text: Hunan Agricultural University

text: live

text: Generic

text: Macleaya microcarpa

text: phase 2 root


phase 2 fruit

text: Hunan Agricultural University

text: live

text: Generic

text: Macleaya microcarpa

text: phase 2 fruit


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

characteristic: development stage

text: Landsberg erecta

characteristic: ecotype

text: Arabidopsis thaliana

text: seedlings, Landsberg erecta ecotype

text: seedlings

characteristic: tissue

text: mRNA-seq in Ler, technical replicate 1


text: Deng Xing-Wang, MCDB, Yale University

characteristic: INSDC center name

text: live

text: Generic

text: Landsberg erecta

text: Arabidopsis thaliana

text: seedlings, Landsberg erecta ecotype

text: seedlings

text: mRNA-seq in Ler, technical replicate 2


text: Deng Xing-Wang, MCDB, Yale University

characteristic: INSDC first public

text: live

text: Generic

text: Landsberg erecta

text: Arabidopsis thaliana

text: seedlings, Landsberg erecta ecotype

text: seedlings

text: mRNA-seq in Ler, technical replicate 3


text: Deng Xing-Wang, MCDB, Yale University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Landsberg erecta

text: Arabidopsis thaliana

text: seedlings, Landsberg erecta ecotype

text: seedlings

text: mRNA-seq in Ler, technical replicate 4


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

characteristic: organism

text: seedlings, C24 ecotype

text: C24 ecotype

characteristic: strain

text: seedlings

text: mRNA-seq in C24, technical replicate 1


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, C24 ecotype

text: C24 ecotype

text: seedlings

text: mRNA-seq in C24, technical replicate 2

characteristic: title


text: Deng Xing-Wang, MCDB, Yale University

characteristic: INSDC last update

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, C24 ecotype

text: C24 ecotype

text: seedlings

text: mRNA-seq in C24, technical replicate 3


text: Deng Xing-Wang, MCDB, Yale University

text: live

characteristic: INSDC status

text: Generic

text: Arabidopsis thaliana

text: seedlings, C24 ecotype

text: C24 ecotype

text: seedlings

text: mRNA-seq in C24, technical replicate 4


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

characteristic: NCBI submission model

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Flc

text: F1 hybrids Flc

text: seedlings

text: mRNA-seq in flc, technical replicate 1


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Flc

text: F1 hybrids Flc

text: seedlings

text: mRNA-seq in flc, technical replicate 2


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Flc

text: F1 hybrids Flc

text: seedlings

text: mRNA-seq in flc, technical replicate 3


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Flc

text: F1 hybrids Flc

text: seedlings

text: mRNA-seq in flc, technical replicate 4


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Fcl

text: F1 hybrids Fcl

text: seedlings

text: mRNA-seq in fcl, technical replicate 1


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Fcl

text: F1 hybrids Fcl

text: seedlings

text: mRNA-seq in fcl, technical replicate 2


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Fcl

text: F1 hybrids Fcl

text: seedlings

text: mRNA-seq in fcl, technical replicate 3


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Fcl

text: F1 hybrids Fcl

text: seedlings

text: mRNA-seq in fcl, technical replicate 4


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Landsberg erecta

text: Arabidopsis thaliana

text: seedlings, Landsberg erecta ecotype

text: seedlings

text: smRNA-seq in Ler, biological replicate 1


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Landsberg erecta

text: Arabidopsis thaliana

text: seedlings, Landsberg erecta ecotype

text: seedlings

text: smRNA-seq in Ler, biological replicate 2


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Landsberg erecta

text: Arabidopsis thaliana

text: seedlings, Landsberg erecta ecotype

text: seedlings

text: smRNA-seq in Ler, biological replicate 3


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, C24 ecotype

text: C24 ecotype

text: seedlings

text: smRNA-seq in C24, biological replicate 1


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, C24 ecotype

text: C24 ecotype

text: seedlings

text: smRNA-seq in C24, biological replicate 2


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, C24 ecotype

text: C24 ecotype

text: seedlings

text: smRNA-seq in C24, biological replicate 3


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Flc

text: F1 hybrids Flc

text: seedlings

text: smRNA-seq in flc, biological replicate 1


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Flc

text: F1 hybrids Flc

text: seedlings

text: smRNA-seq in flc, biological replicate 2


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Flc

text: F1 hybrids Flc

text: seedlings

text: smRNA-seq in flc, biological replicate 3


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Fcl

text: F1 hybrids Fcl

text: seedlings

text: smRNA-seq in fcl, biological replicate 1


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Fcl

text: F1 hybrids Fcl

text: seedlings

text: smRNA-seq in fcl, biological replicate 2


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Fcl

text: F1 hybrids Fcl

text: seedlings

text: smRNA-seq in fcl, biological replicate 3


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Landsberg erecta

text: Arabidopsis thaliana

text: seedlings, Landsberg erecta ecotype

text: seedlings

text: Bisulfite-seq in Ler, biological replicate 1


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Landsberg erecta

text: Arabidopsis thaliana

text: seedlings, Landsberg erecta ecotype

text: seedlings

text: Bisulfite-seq in Ler, biological replicate 2


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Landsberg erecta

text: Arabidopsis thaliana

text: seedlings, Landsberg erecta ecotype

text: seedlings

text: Bisulfite-seq in Ler, biological replicate 3


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, C24 ecotype

text: C24 ecotype

text: seedlings

text: Bisulfite-seq in C24, biological replicate 1


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, C24 ecotype

text: C24 ecotype

text: seedlings

text: Bisulfite-seq in C24, biological replicate 2


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, C24 ecotype

text: C24 ecotype

text: seedlings

text: Bisulfite-seq in C24, biological replicate 3


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Flc

text: F1 hybrids Flc

text: seedlings

text: Bisulfite-seq in flc, biological replicate 1


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Flc

text: F1 hybrids Flc

text: seedlings

text: Bisulfite-seq in flc, biological replicate 2


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Flc

text: F1 hybrids Flc

text: seedlings

text: Bisulfite-seq in flc, biological replicate 3


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Fcl

text: F1 hybrids Fcl

text: seedlings

text: Bisulfite-seq in fcl, biological replicate 1


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Fcl

text: F1 hybrids Fcl

text: seedlings

text: Bisulfite-seq in fcl, biological replicate 2


text: Deng Xing-Wang, MCDB, Yale University

text: live

text: Generic

text: Arabidopsis thaliana

text: seedlings, F1 hybrids Fcl

text: F1 hybrids Fcl

text: seedlings

text: Bisulfite-seq in fcl, biological replicate 3


Rojo Pasion Apricot

text: CEBAS-CSIC

text: live

text: Generic

text: First results apricot RNA-seq performed in the Plum pox virus (PPV)resistant genotype Rojo Pasion in collaboration with the Ultrasequencing Unit of the Centre for Genomic Regulation of Barcelona (Spain) (http://www.crg.es) showed the high number of reads (more than 20 million)and their good quality (only 2% of the reads have been discarded). In addition, 72.3% of these reads have been aligned to a single location to the reference peach genome (v1.0) (http://www.rosaceae.org/peach/genome) with 0, 1 or 2 mismatches. These alignement results confirmed the high levels of synteny between Prunus transcriptomes, also evidenced for Prunus genomes, and the utility of the peach genome as reference in first RNA-Seq studies in other Prunus species. Differential analysis of this RNA-Seq data is being performed with a great potential application in the identification of differentially expressed genes that may be correlated with the differential response of apricot against PPV.

characteristic: description

text: Prunus armeniaca var. armeniaca

text: High-Throughput Sequencing on mRNA from Rojo Pasion Apricot


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

characteristic: NCBI submission package

text: Escherichia coli TW06591

text: Escherichia coli TW06591


text: Harvard Medical School - CBMI

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus


characteristic: External Id

text: Ronald Evans, Gene Expression Lab, Salk Institute

text: live

text: Generic

text: primary bone marrow-derived macrophages

characteristic: cell type

characteristic: chip antibody

text: 10 month old male

characteristic: donor age

text: Mus musculus

text: wild-type primary bone marrow-derived macrophages

text: macrophage_Bcl6_ChIPSeq replicate

text: unstimulated macrophages

characteristic: treatment


PRJNA167910.F4 #8

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Aplysia californica

text: F4 #8

characteristic: sample name

text: Generic sample from Aplysia californica


text: Molecular Biology, NCMLS Radboud University Nijmegen

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: Antibody H3K27me3 (Millipore 07-449, DAM-1588246)

characteristic: antibody

text: ES-cells

text: Mus musculus

characteristic: organism

text: Chromatin IP against H3K27me3

characteristic: source

text: Embryonic Stem cells


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: fragmentented two times Poly(A) selected ds_cDNA

text: ES-cells

text: Mus musculus

text: Poly(A) RNA

characteristic: rna subtype

text: Embryonic Stem cells

characteristic: strain

characteristic: title


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: rRNA depleted strand specific ds_cDNA

text: ES-cells

characteristic: cell type

text: Mus musculus

text: rRNA depleted total RNA

text: Embryonic Stem cells

text: C57BL/6 * 129

text: TNGA-2i_strand-specific-rRNA-depleted-RNA-Seq


characteristic: INSDC center name

text: live

text: Generic

text: rRNA depleted strand specific ds_cDNA

text: ES-cells

text: Mus musculus

text: rRNA depleted total RNA

text: Embryonic Stem cells

text: C57BL/6 * 129

text: TNGA-serum_strand-specific-rRNA-depleted-RNA-Seq


text: live

text: Generic

text: rRNA depleted strand specific ds_cDNA

text: ES-cells

text: Mus musculus

text: rRNA depleted total RNA

text: Embryonic Stem cells

text: E14-serum_strand-specific-rRNA-depleted-RNA-Seq


text: live

text: Generic

text: rRNA depleted strand specific ds_cDNA

text: ES-cells

text: Mus musculus

text: rRNA depleted total RNA

text: Embryonic Stem cells

text: E14-2i_strand-specific-rRNA-depleted-RNA-Seq


text: live

text: Generic

text: Antibody H3K9me3 (Abcam ab8898-100, lot. 733953)

text: ES-cells

text: Mus musculus

text: Chromatin IP against H3K9me3

text: Embryonic Stem cells

text: C57BL/6 * 129


text: live

text: Generic

text: ES-cells

text: Mus musculus

text: Chromatin IP against H3K9me3

text: Embryonic Stem cells


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Bacillus cereus BAG1O-2

characteristic: sample name

text: Generic sample from Bacillus cereus BAG1O-2


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Bacillus cereus BAG1O-3

text: Generic sample from Bacillus cereus BAG1O-3


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus BAG1X1-1

characteristic: organism

text: Generic sample from Bacillus cereus BAG1X1-1


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: in vitro activated B cells

text: Santa Cruz rabbit polyclonal anti-AID antibody (Catalog No. sc-25620)

characteristic: chip antibody

text: AID

characteristic: chip target

text: Mus musculus

text: Activated B cells

text: C57BL/6 AID-GFP


text: Casellas lab, NIAMS, NIH

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: B cells

text: Mixture of various non-specific antibodies

text: Mus musculus

text: B cells


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Bacillus cereus BAG1X1-2

text: Generic sample from Bacillus cereus BAG1X1-2


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus BAG1X1-3

characteristic: strain

text: Generic sample from Bacillus cereus BAG1X1-3


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus BAG1X2-1

text: Generic sample from Bacillus cereus BAG1X2-1

characteristic: title


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus BAG1X2-2

text: Generic sample from Bacillus cereus BAG1X2-2


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: Bacillus cereus BAG2O-1

text: Generic sample from Bacillus cereus BAG2O-1


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Bacillus cereus BAG2O-2

text: Generic sample from Bacillus cereus BAG2O-2


text: Laboratory of Gene Regulation, Ludwig Institute for Cancer Research

text: live

text: Generic

text: Active motif, 39133

characteristic: antibody

text: Mus musculus

text: Mouse bone marrow


characteristic: INSDC center name

text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse cerebellum


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse cortex


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse heart


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse kidney


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse liver


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse lung


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse embryonic fibroblast


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Bruce4 embryonic stem cells


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse spleen


text: live

text: Generic

text: Kim et al., 2007

text: Mus musculus

text: Mouse E14.5 brain

text: RenLab-CTCF-embryonic-brain


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse E14.5 brain


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Mouse E14.5 brain


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Mouse E14.5 brain


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse E14.5 brain


text: live

text: Generic

text: Mus musculus

text: Mouse E14.5 brain

text: RenLab-Input-embryonic-brain


text: live

text: Generic

text: Kim et al., 2007

text: Mus musculus

text: Mouse E14.5 heart

text: RenLab-CTCF-embryonic-heart


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse E14.5 heart


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Mouse E14.5 heart


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Mouse E14.5 heart


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse E14.5 heart


text: live

text: Generic

text: Mus musculus

text: Mouse E14.5 heart

text: RenLab-Input-embryonic-heart


text: live

text: Generic

text: Kim et al., 2007

text: Mus musculus

text: Mouse E14.5 limb

text: RenLab-CTCF-embryonic-limb


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse E14.5 limb


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Mouse E14.5 limb


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Mouse E14.5 limb


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse E14.5 limb


text: live

text: Generic

text: Mus musculus

text: Mouse E14.5 limb

text: RenLab-Input-embryonic-limb


text: live

text: Generic

text: Kim et al., 2007

text: Mus musculus

text: Mouse E14.5 liver

text: RenLab-CTCF-embryonic-liver


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse E14.5 liver


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Mouse E14.5 liver


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Mouse E14.5 liver


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse E14.5 liver


text: live

text: Generic

text: Mus musculus

text: Mouse E14.5 liver

text: RenLab-Input-embryonic-liver


text: live

text: Generic

text: Kim et al., 2007

text: Mus musculus

text: Mouse intestine

text: RenLab-CTCF-intestine


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse intestine


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Mouse intestine


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Mouse intestine


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse intestine


text: live

text: Generic

text: Mus musculus

text: Mouse intestine

text: RenLab-Input-intestine


text: live

text: Generic

text: Kim et al., 2007

text: Mus musculus

text: Mouse olfactory bulb

text: RenLab-CTCF-olfactory-bulb


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse olfactory bulb


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Mouse olfactory bulb


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Mouse olfactory bulb


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse olfactory bulb


text: live

text: Generic

text: Mus musculus

text: Mouse olfactory bulb

text: RenLab-Input-olfactory-bulb


text: live

text: Generic

text: Kim et al., 2007

text: Mus musculus

text: Mouse placenta

text: RenLab-CTCF-placenta


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse placenta


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Mouse placenta


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Mouse placenta


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse placenta


text: live

text: Generic

text: Mus musculus

text: Mouse placenta

text: RenLab-Input-placenta


text: live

text: Generic

text: Kim et al., 2007

text: Mus musculus

text: Mouse testis

text: RenLab-CTCF-testis


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse testis


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Mouse testis


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Mouse testis


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse testis


text: live

text: Generic

text: Mus musculus

text: Mouse testis

text: RenLab-Input-testis


text: live

text: Generic

text: Kim et al., 2007

text: Mus musculus

text: Mouse thymus

text: RenLab-CTCF-thymus


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse thymus


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Mouse thymus


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Mouse thymus


text: live

text: Generic

text: Active motif, 39133

text: Mus musculus

text: Mouse thymus


text: live

text: Generic

text: Mus musculus

text: Mouse thymus

text: RenLab-Input-thymus


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Bacillus cereus BAG2O-3

text: Generic sample from Bacillus cereus BAG2O-3


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus BAG3X2-1

characteristic: sample name

text: Generic sample from Bacillus cereus BAG3X2-1


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Bacillus cereus BAG6O-1

text: Generic sample from Bacillus cereus BAG6O-1


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Bacillus cereus CER057

text: Generic sample from Bacillus cereus CER057


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus CER074

characteristic: organism

text: Generic sample from Bacillus cereus CER074


text: Indian Institute of Technology, Kharagpur

text: live

text: Generic

text: JRC 321 and 'Soft stem'mutant of JRC 321

characteristic: cultivar

text: Total RNA was isolated from stem tissue of cultivated jute Corchorus capsularis, JRC 321 and its mutant known as 'soft stem' at the fibre forming stage by hot borate method and purified by isopycnic CsCl density gradient ultracentrifugation following the protocol of Samanta et al (2011). Poly(A)+ mRNA was purified using oligo (dT) cellulose column. First strand and second strand cDNAs were synthesized from mRNA using the PCR-Select cDNA Subtraction Kit (Clontech Laboratories Inc, Palo Alto, CA, USA) following the manufacturer's instruction. The double stranded cDNA synthesized was digested by RsaI. Adaptors were ligated to the cDNA of the tester plant (JRC321) and subtracted with the cDNA of driver plant (soft stem) using the PCR-Select cDNA Subtraction Kit. The subtracted cDNA was colned into TA cloning vector (Fermentas InsTAclone PCR Cloning Kit) to construct the subtracted cDNA library. The library was further hybridized with cDNA of the mutant (soft stem). After two rounds of hybridizations, unhybridized and faintly hybridized clones were selected. The selected clones were then subjected to single pass sequencing. The resultant sequences were subjected to VecScreen for removing the vector and adaptor sequences. The clones were putatively identified by searching against plant database in TIGR using tblastx and tblastN. Clones with e-value greater than 10-10 were considered significant.

characteristic: description

text: 20-45 days after sowing

characteristic: dev-stage

text: E.coli DH10B

characteristic: lab-host

text: Stem

characteristic: organ

text: Corchorus capsularis

text: Rsa I

text: Rsa I

text: Hermaphrodite

characteristic: sex

text: Bast fiber and associated tissues

characteristic: tissue-type

text: Jute Plasmid Suppression Subtractive cDNA library

text: Plasmid

text: TA Cloning Vector

characteristic: vector


characteristic: External Id

text: Shanghai University Shool of Life Sciences

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Zea mays

text: Transposed Ac from apt1-m1(Ac) Library

characteristic: title


text: University of Pennsylvania School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: liver

characteristic: cell type

text: Mus musculus

text: liver

text: Gao AAV mouse Integration Site Library


text: CSIRO Plant Industry

text: live

text: Generic

text: Tanjil

characteristic: cultivar

text: Lupinus angustifolius

characteristic: organism

text: Narrow-leafed lupin BAC-end sequences


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: Bacillus cereus HD73

characteristic: sample name

characteristic: strain

text: Generic sample from Bacillus cereus HD73


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus HuA2-1

text: Generic sample from Bacillus cereus HuA2-1


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus HuA2-4

text: Generic sample from Bacillus cereus HuA2-4


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus HuA2-9

text: Generic sample from Bacillus cereus HuA2-9


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus HuA3-9

text: Generic sample from Bacillus cereus HuA3-9


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus HuA4-10

text: Generic sample from Bacillus cereus HuA4-10


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus HuB5-5

text: Generic sample from Bacillus cereus HuB5-5


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus HuB4-10

text: Generic sample from Bacillus cereus HuB4-10


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus IS195

text: Generic sample from Bacillus cereus IS195


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus K-5975c

text: Generic sample from Bacillus cereus K-5975c


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus IS845/00

text: Generic sample from Bacillus cereus IS845/00


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus MC118

text: Generic sample from Bacillus cereus MC118


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus MC67

text: Generic sample from Bacillus cereus MC67


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus MSX-A1

text: Generic sample from Bacillus cereus MSX-A1


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus MSX-A12

text: Generic sample from Bacillus cereus MSX-A12


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus VD014

text: Generic sample from Bacillus cereus VD014


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus VD021

text: Generic sample from Bacillus cereus VD021


text: Broad Institute

text: live

text: Generic

text: Generic

text: isolated from water

characteristic: isolation source

text: Bacillus cereus VD022

text: Generic sample from Bacillus cereus VD022


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus VD045

text: Generic sample from Bacillus cereus VD045


text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Bacillus cereus VD048

text: Generic sample from Bacillus cereus VD048


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Bacillus cereus VD078

text: Generic sample from Bacillus cereus VD078


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Bacillus cereus VD102

text: Generic sample from Bacillus cereus VD102


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: Bacillus cereus VD107

text: Generic sample from Bacillus cereus VD107


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus VD115

text: Generic sample from Bacillus cereus VD115

characteristic: title


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Bacillus cereus VD133

text: Generic sample from Bacillus cereus VD133


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Bacillus cereus VD148

text: Generic sample from Bacillus cereus VD148


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus VD154

text: Generic sample from Bacillus cereus VD154


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus VD156

text: Generic sample from Bacillus cereus VD156


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus VD169

text: Generic sample from Bacillus cereus VD169


text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacillus cereus VD196

text: Generic sample from Bacillus cereus VD196