text: Washington University, Genome Sequencing Center

characteristic: INSDC last update

text: live

text: Generic

text: Sample Type : cdna

text: Trichostrongylus colubriformis

characteristic: organism

text: Generic sample from Trichostrongylus colubriformis


status: PUBLIC

characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Drosophila melanogaster DGRP-28

characteristic: description

text: Drosophila melanogaster

tag: attribute

characteristic: strain

text: Drosophila melanogaster SRA sample SRS074461

characteristic: title


name: ChIP-seq of SPI1 in human leukemia cell HL60

text: University of Helsinki

text: live

text: Generic

text: Homo sapiens

text: Genome-Wide Analysis of ETS Family DNA-Binding in vitro and in vivo


name: ChIP-seq of ELF1 in human leukemia cell Jurkat

text: University of Helsinki

text: live

text: Generic

text: Homo sapiens


text: Baylor College of Medicine

text: live

text: Generic

text: Drosophila melanogaster DGRP-41

text: Drosophila melanogaster

text: Drosophila melanogaster SRA sample SRS074464


name: ChIP-seq of EWS-FLI1 in human Ewing's sarcoma cell SK-N-MC

text: University of Helsinki

text: live

text: Generic

text: Homo sapiens


text: Baylor College of Medicine

text: live

text: Generic

text: Drosophila melanogaster DGRP-325

text: Drosophila melanogaster

text: Drosophila melanogaster SRA sample SRS074466


text: Baylor College of Medicine

text: live

text: Generic

text: Drosophila melanogaster DGRP-386

text: Drosophila melanogaster

text: Drosophila melanogaster SRA sample SRS074467


name: ChIP-seq of AR in human prostate cancer cell VCaP

text: University of Helsinki

text: live

text: Generic

text: Homo sapiens


text: Baylor College of Medicine

text: live

text: Generic

text: Drosophila melanogaster DGRP-306

text: Drosophila melanogaster

text: Sample from Drosophila melanogaster


name: ChIP-seq of ERG in human prostate cancer cell VCaP

text: University of Helsinki

text: live

text: Generic

text: Homo sapiens


name: ChIP-seq of H3K4me1 in human prostate cancer cell VCaP

text: University of Helsinki

text: live

text: Generic

text: Homo sapiens


name: ChIP-seq of SPDEF in human prostate cancer cell VCaP

text: University of Helsinki

text: live

text: Generic

text: Homo sapiens


text: Haematopoietic Stem Cell Lab, Department of Haematology, Cambridge Institute for Medical Research

text: live

text: Generic

text: Early haematopoietic cell line derived from ES cells

characteristic: cell type

text: Mus musculus

text: HPC-7 Cell Line


text: Helicos BioSciences Corporation

text: live

text: Generic

text: 490 cell line lysate

text: Mus musculus

text: Generic sample from Mus musculus


text: Helicos BioSciences Corporation

text: live

text: Generic

text: SM25 cell line lysate

text: Mus musculus

text: Generic sample from Mus musculus


text: Helicos BioSciences Corporation

text: live

text: Generic

text: 490 cell line total RNA

text: Mus musculus

text: Generic sample from Mus musculus


text: IPMC/CNRS

text: live

text: Generic

text: End of proliferation

characteristic: differentiation step

text: Homo sapiens

characteristic: rin number

text: Human nasal epithelial cells

text: human nasal mucosa

characteristic: tissue

text: ALI-D0, donor 1


text: IPMC/CNRS

characteristic: INSDC last update

text: live

text: Generic

text: Polarization

text: Homo sapiens

text: Human nasal epithelial cells

text: human nasal mucosa

text: ALI-D7, donor 1


text: IPMC/CNRS

text: live

text: Generic

text: Onset of mucociliary differentiation

text: Homo sapiens

characteristic: organism

text: Human nasal epithelial cells

text: human nasal mucosa

text: ALI-D14, donor 1


characteristic: External Id

text: IPMC/CNRS

text: live

text: Generic

text: Terminal mucociliary differentiation

text: Homo sapiens

text: Human nasal epithelial cells

text: human nasal mucosa

text: ALI-D21, donor 1


text: IPMC/CNRS

characteristic: INSDC center name

text: live

text: Generic

text: End of proliferation

text: Homo sapiens

text: Human nasal epithelial cells

text: human nasal mucosa

text: ALI-D0, donor 2


text: IPMC/CNRS

characteristic: INSDC first public

text: live

text: Generic

text: Polarization

text: Homo sapiens

text: Human nasal epithelial cells

text: human nasal mucosa

text: ALI-D7, donor 2


text: IPMC/CNRS

characteristic: INSDC secondary accession

text: live

text: Generic

text: Onset of mucociliary differentiation

text: Homo sapiens

text: Human nasal epithelial cells

text: human nasal mucosa

text: ALI-D14, donor 2


text: IPMC/CNRS

text: live

characteristic: INSDC status

text: Generic

text: Terminal mucociliary differentiation

text: Homo sapiens

text: Human nasal epithelial cells

text: human nasal mucosa

text: ALI-D21, donor 2


text: IPMC/CNRS

text: live

text: Generic

characteristic: NCBI submission model

text: End of proliferation

text: Homo sapiens

text: Human nasal epithelial cells

text: human nasal mucosa

text: ALI-D0, donor 3


text: IPMC/CNRS

text: live

text: Generic

characteristic: NCBI submission package

text: Polarization

text: Homo sapiens

text: Human nasal epithelial cells

text: human nasal mucosa

text: ALI-D7, donor 3


text: IPMC/CNRS

text: live

text: Generic

characteristic: SRA accession

text: Onset of mucociliary differentiation

text: Homo sapiens

text: Human nasal epithelial cells

text: human nasal mucosa

text: ALI-D14, donor 3


text: IPMC/CNRS

text: live

text: Generic

text: Terminal mucociliary differentiation

text: Homo sapiens

text: Human nasal epithelial cells

text: human nasal mucosa

text: ALI-D21, donor 3


text: IPMC/CNRS

text: live

text: Generic

text: Basal

text: Homo sapiens

text: Basal cells

text: human nasal mucosa

text: Basal cells, donor 1


text: IPMC/CNRS

text: live

text: Generic

text: Basal

text: Homo sapiens

text: Basal cells

text: human nasal mucosa

text: Basal cells, donor 2


text: IPMC/CNRS

text: live

text: Generic

text: Basal

text: Homo sapiens

text: Basal cells

text: human nasal mucosa

text: Basal cells, donor 3


text: IPMC/CNRS

text: live

text: Generic

text: Majority of columnar ciliated cells

text: Homo sapiens

text: Columnar cells

text: human nasal mucosa

text: Columnar cells, donor 1


text: IPMC/CNRS

text: live

text: Generic

text: Majority of columnar ciliated cells

text: Homo sapiens

text: Columnar cells

text: human nasal mucosa

text: Columnar cells, donor 2


text: IPMC/CNRS

text: live

text: Generic

text: Majority of columnar ciliated cells

text: Homo sapiens

text: Columnar cells

text: human nasal mucosa

text: Columnar cells, donor 3


text: IPMC/CNRS

text: live

text: Generic

text: Gastrula Stage 11.5

characteristic: developmental stage

text: Non ciliated

text: Xenopus laevis

text: epidermal explants at stage 11.5

text: epidermic embryo


text: IPMC/CNRS

text: live

text: Generic

text: Gastrula Stage 11.5

text: Non ciliated

text: Xenopus laevis

text: epidermal explants at stage 11.6

text: epidermic embryo


text: IPMC/CNRS

text: live

text: Generic

text: Tailbud Stage 26

text: Ciliated

text: Xenopus laevis

text: epidermal explants at stage 26

text: epidermic embryo


text: IPMC/CNRS

text: live

text: Generic

text: Tailbud Stage 26

text: Ciliated

text: Xenopus laevis

text: epidermal explants at stage 27

text: epidermic embryo


WGS-ADWM

text: NCBI-Whole Genome Shotgun Submissions

text: live

text: Generic

characteristic: collection-date

text: Italy: Veneto Region

characteristic: country

characteristic: isolate

text: Homo sapiens

characteristic: nat-host

text: Neisseria meningitidis K1207

text: C

characteristic: serogroup

characteristic: strain

text: Neisseria meningitidis K1207


WGS-ADWN

text: NCBI-Whole Genome Shotgun Submissions

characteristic: INSDC last update

text: live

text: Generic

text: Italy: Veneto Region

text: Homo sapiens

text: Neisseria meningitidis S0108

text: C

text: Neisseria meningitidis S0108

characteristic: title


characteristic: CC

characteristic: External Id

text: Centers for Disease Control and Prevention

text: live

text: Generic

characteristic: ST

characteristic: Year isolated

text: Isolated from individual in the Oregon pandemic, 2003.

characteristic: description

text: invasive

characteristic: disease

text: Oregon

characteristic: geographic origin

text: Neisseria meningitidis serogroup B

characteristic: organism


text: New York City

characteristic: Geographic origin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NYC outbreak

text: invasive

text: Neisseria meningitidis serogroup C


text: Burkina Faso

characteristic: INSDC last update

text: live

text: Generic

text: From Burkina Faso

text: invasive

text: Neisseria meningitidis

characteristic: serogroup

characteristic: title


gynoecious

characteristic: External Id

text: Boyce Thompson Institute

text: live

text: Generic

text: Flower buds of approximately 5 mm in diameter were collected from gynoecious (WI1983G) cucumber line

text: Cucumis sativus

text: flower buds from gynoecious cucumber line


hermaphrodite

text: Boyce Thompson Institute

text: live

text: Generic

text: Flower buds of approximately 5 mm in diameter were collected from hermaphrodite (WI1983H) cucumber line

text: Cucumis sativus

text: flower buds from hermaphrodite cucumber line


Milnesium tardigradum

text: Funcrypta

text: live

text: Generic

text: Milnesium tardigradum

text: Milnesium tardigradum


text: Integrative Genomics and Bioinformatics Core, Salk Institute

text: live

text: Generic

text: pre-pro-B cell

characteristic: cell type

text: E2A.E12(V-18) (sc-349)

characteristic: chip antibody

text: EBF-/-

characteristic: genetic background

text: Mus musculus

text: EBF-/- pre-pro-B cell

characteristic: strain


text: live

text: Generic

text: pre-pro-B cell

text: H3K4me1 (ab8895)

text: EBF-/-

text: Mus musculus

characteristic: organism

text: EBF-/- pre-pro-B cell


text: live

text: Generic

text: pre-pro-B cell

text: H3K4me2 (ab7766)

text: EBF-/-

text: Mus musculus

text: EBF-/- pre-pro-B cell


text: live

text: Generic

text: pre-pro-B cell

text: H3K4me3 (ab8580)

text: EBF-/-

text: Mus musculus

text: EBF-/- pre-pro-B cell


text: live

text: Generic

text: pre-pro-B cell

text: H3K27me3 (07-449), DAM1421462

text: EBF-/-

text: Mus musculus

text: EBF-/- pre-pro-B cell


text: live

text: Generic

text: pre-pro-B cell

text: Acetyl-Histone H3 (06-599), DAM1588236

text: EBF-/-

text: Mus musculus

text: EBF-/- pre-pro-B cell


text: Medicine, University of California, San Diego (UCSD)

text: live

text: Generic

text: pro-B cell

text: E2A.E12(V-18) (sc-349)

text: Mus musculus

text: RAG1-/- pro-B cell


text: live

text: Generic

text: pro-B cell

text: EBF (H00001879-M01), 08344-1C2

text: Mus musculus

text: RAG1-/- pro-B cell


text: live

text: Generic

text: pro-B cell

text: FKHR (H-128) (sc-11350)

text: Mus musculus

text: RAG1-/- pro-B cell


text: live

text: Generic

text: pro-B cell

text: CTCF (07-729), DAM1421463

text: Mus musculus

text: RAG1-/- pro-B cell


text: live

text: Generic

text: pro-B cell

text: H3K4me1 (ab8895)

text: Mus musculus

text: RAG1-/- pro-B cell


text: live

text: Generic

text: pro-B cell

text: H3K4me2 (ab7766)

text: Mus musculus

text: RAG1-/- pro-B cell


text: live

text: Generic

text: pro-B cell

text: H3K4me3 (ab8580)

text: Mus musculus

text: RAG1-/- pro-B cell


text: live

text: Generic

text: pro-B cell

text: H3K27me3 (07-449), DAM1421462

text: Mus musculus

text: RAG1-/- pro-B cell


text: live

text: Generic

text: pro-B cell

text: Acetyl-Histone H3 (06-599), DAM1588236

text: Mus musculus

text: RAG1-/- pro-B cell


text: live

text: Generic

text: pre-pro-B cell

text: H3K4me1 (ab8895)

text: Mus musculus

text: E2A-/- pre-pro-B cell

text: bHLH-ER

characteristic: transgenes


characteristic: INSDC center name

text: live

text: Generic

text: pre-pro-B cell

text: H3K4me1 (ab8895)

text: Mus musculus

text: E2A-/- pre-pro-B cell


characteristic: INSDC first public

text: live

text: Generic

text: pre-pro-B cell

text: E2A.E12(V-18) (sc-349)

text: Mus musculus

text: E2A-/- pre-pro-B cell


characteristic: INSDC secondary accession

text: live

text: Generic

text: double-positive T cell

text: H3K4me1 (ab8895)

text: Mus musculus

text: A12 (E2A-/- T cell)

text: bHLH-ER


text: live

characteristic: INSDC status

text: Generic

text: double-positive T cell

text: H3K4me1 (ab8895)

text: Mus musculus

text: A12 (E2A-/- T cell)


text: live

text: Generic

characteristic: NCBI submission model

text: double-positive T cell

text: E2A.E12(V-18) (sc-349)

text: Mus musculus

text: A12 (E2A-/- T cell)


text: live

text: Generic

characteristic: NCBI submission package

text: Lymphoid cell

text: WT

text: Mus musculus

text: Lymphoid cell


text: Rockefeller University

text: live

text: Generic

characteristic: SRA accession

text: Fibroblasts from day 13.5 embryos immortalized with SV40-LTA

text: G9a f/f, ERT2-Cre

characteristic: genotype

characteristic: lot

text: Mus musculus

text: Passaged 12-15 times

characteristic: passages

text: MEF

text: H3K9me2 WT 1

text: Abcam (ab1220)

characteristic: vendor


characteristic: External Id

text: Rockefeller University

characteristic: INSDC last update

text: live

text: Generic

characteristic: cell type

text: G9a -/-, ERT2-Cre

text: Mus musculus

text: Passaged 12-15 times

text: MEF

text: H3K9me2 G9a KO 1

characteristic: title

text: Abcam (ab1220)


text: Rockefeller University

text: live

text: Generic

characteristic: chip antibody

text: G9a f/f, ERT2-Cre

text: Mus musculus

characteristic: organism

text: Passaged 12-15 times

text: MEF

characteristic: strain

text: H3K9me2 WT 2

text: Abcam (ab1220)


text: Rockefeller University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: G9a -/-, ERT2-Cre

text: Mus musculus

text: Passaged 12-15 times

text: MEF

text: H3K9me2 G9a KO 2

text: Abcam (ab1220)


text: Rockefeller University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: G9a f/f, ERT2-Cre

text: Mus musculus

text: Passaged 12-15 times

text: MEF

text: H3K9me2 WT 3

text: Abcam (ab1220)


text: Rockefeller University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: G9a f/f, ERT2-Cre

text: Mus musculus

text: Passaged 12-15 times

text: MEF

text: H3K9me2 WT 4

text: Abcam (ab1220)


text: Rockefeller University

text: live

text: Generic

characteristic: SRA accession

text: G9a f/f, ERT2-Cre

characteristic: genotype

text: Mus musculus

text: Passaged 12-15 times

text: MEF

text: H3K9me2 WT 5

text: Abcam (ab1220)


text: Rockefeller University

text: live

text: Generic

text: G9a -/-, ERT2-Cre

characteristic: lot

text: Mus musculus

text: Passaged 12-15 times

characteristic: passages

text: MEF

text: H3K9me2 G9a KO 3

text: Abcam (ab1220)


characteristic: External Id

text: Rockefeller University

text: live

text: Generic

text: G9a -/-, ERT2-Cre

text: Mus musculus

text: Passaged 12-15 times

text: MEF

text: H3K9me2 G9a KO 4

text: Abcam (ab1220)

characteristic: vendor


text: Rockefeller University

characteristic: INSDC last update

text: live

text: Generic

characteristic: cell type

text: G9a -/-, ERT2-Cre

text: Mus musculus

text: Passaged 12-15 times

text: MEF

text: H3K9me2 G9a KO 5

text: Abcam (ab1220)


text: Plant Sciences, UC Davis

text: live

text: Generic

text: Bobwhite

characteristic: cultivar

text: 12 days after anthesis

characteristic: developmental stage

text: Triticum aestivum

text: no apical meristem (NAM)

characteristic: rnai

text: Flag-leaves, NAM-RNAi

text: flag-leaves

characteristic: tissue

characteristic: title


text: 31086182; 35780211

text: Simon Fraser Univeristy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: CAN

text: Generic

text: An outbreak of tuberculosis (n=41) occurred between 2006 and 2008 in a medium-sized British Columbia community. All cultured isolates had identical MIRU-VNTR patterns. The complete genomes of 32 M. tuberculosis outbreak isolates and four isolates with matching genotypes isolated in the region prior to the outbreak were sequenced using Illumina short read sequencing.

characteristic: description

text: Mycobacterium

characteristic: genus

characteristic: isolate

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis isolate MT0001

type: AMR curated data - CABBAGE

value: rifampin

value: broth dilution

value: susceptible

value: Mycobacterium tuberculosis

value: isoniazid

value: streptomycin

value: ethambutol


text: Korean Institute of Science and Technology (KIST)

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: wastewater metagenome


PRJNA40075.MG1655 A

characteristic: External Id

text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: E. coli MG1655

characteristic: isolation source

text: MG1655 A

characteristic: sample name

characteristic: strain

characteristic: substrain

text: Generic sample from Escherichia coli str. K-12 substr. MG1655


PRJNA40075.MG1655 B

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: E. coli MG1655

text: Escherichia coli str. K-12 substr. MG1655

text: MG1655 B

characteristic: title


PRJNA40075.MG1655 C

text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: E. coli MG1655

text: MG1655 C


PRJNA40075.MG1655 D

text: Broad Institute

text: live

text: Generic

text: E. coli MG1655

text: MG1655 D


PRJNA40075.MG1655 Sol (200-400)

text: Broad Institute

text: live

text: Generic

text: E coli MG1655

text: MG1655 Sol (200-400)


PRJNA40075.MG1655 Sol (400-600)

text: Broad Institute

text: live

text: Generic

text: E coli MG1655

text: MG1655 Sol (400-600)


PRJNA40075.MG1655 PCR

text: Broad Institute

text: live

text: Generic

text: E coli MG1655

text: MG1655 PCR


text: Penn State

text: live

text: Generic

characteristic: collection date

text: Dead Sea water sample collected in 2007

characteristic: description

text: marine metagenome

text: Dead Sea water sample 2007


text: Penn State

text: live

text: Generic

text: Dead Sea water sample collected from archeal bloom in 1992

text: marine metagenome

characteristic: organism

text: Dead Sea water sample 1992


Huhu

text: Scion

text: live

characteristic: INSDC status

text: Generic

text: The guts were collected from a few Huhu grubs living in the ground logs of Pinus Radiata in Rotorua. The guts were homogenised before half was extracted for DNA and the other half extracted for RNA before proceeding with amplification and sequencing.

text: termite gut metagenome

text: 16S rRNA pyrosequencing of NZ insect guts


Okataina

text: Scion

text: live

text: Generic

characteristic: NCBI submission model

text: The guts were collected from around 40 NZ termites living in the ground logs of Red/Hard beech in Rotorua. The guts were homogenised before half was extracted for DNA and the other half extracted for RNA before proceeding with amplification and sequencing.

text: termite gut metagenome


Beech

text: Scion

text: live

text: Generic

characteristic: NCBI submission package

text: termite gut metagenome


GTI

text: Scion

text: live

text: Generic

characteristic: SRA accession

text: The guts were collected from around 40 NZ termites living in the ground logs of Corsican Pine in Rotorua. The guts were homogenised before half was extracted for DNA and the other half extracted for RNA before proceeding with amplification and sequencing.

text: termite gut metagenome


Oedemeridae

characteristic: External Id

text: Scion

text: live

text: Generic

text: The gut was collected from a NZ Oedemeridae grub living in Rotorua. The gut was homogenised before extracting for DNA before proceeding with amplification and sequencing.

text: termite gut metagenome


Redwood

text: Scion

characteristic: INSDC last update

text: live

text: Generic

text: The guts were collected from around 40 NZ termites living in the ground logs of Larch in Rotorua. The guts were homogenised before half was extracted for DNA and the other half extracted for RNA before proceeding with amplification and sequencing.

text: termite gut metagenome


Reservoir Rd

text: Scion

text: live

text: Generic

text: The guts were collected from around 40 NZ termites living in the ground logs of Douglas fir in Rotorua. The guts were homogenised before half was extracted for DNA and the other half extracted for RNA before proceeding with amplification and sequencing.

text: termite gut metagenome


Scion

text: Scion

text: live

text: Generic

text: The guts were collected from around 40 NZ termites living in the ground logs of Larch in Rotorua. The guts were homogenised before extracting for DNA before proceeding with amplification and sequencing.

text: termite gut metagenome


Wainui

text: Scion

text: live

text: Generic

text: The guts were collected from around 40 NZ termites living in the ground logs of Kowhai in Rotorua. The guts were homogenised before extracting for DNA before proceeding with amplification and sequencing.

text: termite gut metagenome


default Bioreactor

text: University of North Carolina

text: live

text: Generic

text: soil metagenome

text: Generic sample from soil metagenome


text: University of Florida

text: live

text: Generic

text: DNA was extracted from the stool samples of 8 Finnish children. The 16S rRNA gene was amplified using barcoded, universal primers. the amplified products were sequenced by 454 pyrosequencing. Barcode Table: Subject Time Point Barcode Case 1 1 AACCAACCCA 2 AACCAAGGCA 3 AACCATCGCA Case 2 1 AACCGGAACA 2 AACCTACGCA 3 AACCTTCCCA Case 3 1 AACGAACGCA 2 AACGATCCCA 3 AACGCCATCA Case 4 1 AACGCGTTCA 2 AACGGCTTCA 3 AACGTAGGCA Control 1 1 AACCATGCCA 2 AACCGCATCA 3 AACCGCTACA Control 2 1 AACCGGTTCA 2 AACCTAGCCA 3 AACCTTGGCA Control 3 1 AACGAAGCCA 2 AACGATGGCA 3 AACGCCTACA Control 4 1 AACGCGAACA 2 AACGGCAACA 3 AACGTACCCA

text: human gut metagenome

text: Stool Sample Metagenome


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS15015

text: Generic sample from Streptococcus pyogenes MGAS15015


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS15016

text: Generic sample from Streptococcus pyogenes MGAS15016


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS15018

text: Generic sample from Streptococcus pyogenes MGAS15018


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS15019

text: Generic sample from Streptococcus pyogenes MGAS15019


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10861

text: Generic sample from Streptococcus pyogenes MGAS10861


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10862

text: Generic sample from Streptococcus pyogenes MGAS10862


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10868

text: Generic sample from Streptococcus pyogenes MGAS10868


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10871

text: Generic sample from Streptococcus pyogenes MGAS10871


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10875

text: Generic sample from Streptococcus pyogenes MGAS10875


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS15000

text: Generic sample from Streptococcus pyogenes MGAS15000


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10831

text: Generic sample from Streptococcus pyogenes MGAS10831


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10833

text: Generic sample from Streptococcus pyogenes MGAS10833


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS15002

text: Generic sample from Streptococcus pyogenes MGAS15002


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS9957

text: Generic sample from Streptococcus pyogenes MGAS9957


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS9960

text: Generic sample from Streptococcus pyogenes MGAS9960


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS15003

text: Generic sample from Streptococcus pyogenes MGAS15003


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS15004

text: Generic sample from Streptococcus pyogenes MGAS15004


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS15006

text: Generic sample from Streptococcus pyogenes MGAS15006


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10835

text: Generic sample from Streptococcus pyogenes MGAS10835


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10839

text: Generic sample from Streptococcus pyogenes MGAS10839


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10841

text: Generic sample from Streptococcus pyogenes MGAS10841


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10848

text: Generic sample from Streptococcus pyogenes MGAS10848


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10851

text: Generic sample from Streptococcus pyogenes MGAS10851


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10852

text: Generic sample from Streptococcus pyogenes MGAS10852


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10853

text: Generic sample from Streptococcus pyogenes MGAS10853


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10856

text: Generic sample from Streptococcus pyogenes MGAS10856


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10857

text: Generic sample from Streptococcus pyogenes MGAS10857


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10859

text: Generic sample from Streptococcus pyogenes MGAS10859


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS9961

text: Generic sample from Streptococcus pyogenes MGAS9961


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS9962

text: Generic sample from Streptococcus pyogenes MGAS9962


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS9964

text: Generic sample from Streptococcus pyogenes MGAS9964


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS9965

text: Generic sample from Streptococcus pyogenes MGAS9965


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS9970

text: Generic sample from Streptococcus pyogenes MGAS9970


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS9971

text: Generic sample from Streptococcus pyogenes MGAS9971


text: Broad Institute

text: live

text: Generic

text: CA

text: Streptococcus pyogenes MGAS9974

text: Generic sample from Streptococcus pyogenes MGAS9974


text: Cold Spring Harbor Laboratory

text: live

text: Generic

text: T10 is a triple negative (ER- PR- HER2-) ductal carcinoma

text: Homo sapiens

text: T10 Ductal Carcinoma


AAA smed

text: University of Nottingham

text: live

text: Generic

text: ASexual clonal line of schmidtea meditarranea.

text: Schmidtea mediterranea

text: AAA smed


Salvia miltiorrhiza Bunge

text: Shaanxi Normal University

text: live

text: Generic

text: The sample was collected frome fore different growth stages of Salvia miltiorrhiza,such as bud, two-week old seedling, two-month old seedings and flowering plantlets,then were mixtured to extract total RNA.

text: Salvia miltiorrhiza

text: Salvia miltiorrhiza Bunge-ShaanXi


M.acuminata FLX1

text: IEB

text: live

text: Generic

text: Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing

text: Musa acuminata


text: 28 days

characteristic: Feeding process

text: University of North Carolina

text: live

text: Generic

text: soil metagenome

text: soil metagenome

text: Bioreactor slurry

characteristic: type of sample


text: 28 days

text: University of North Carolina

text: live

text: Generic

text: soil metagenome

characteristic: sample day

text: soil metagenome

text: Bioreactor slurry


text: 7 days

text: University of North Carolina

text: live

text: Generic

text: soil metagenome

text: soil metagenome

text: Bioreactor slurry


text: 7 days

text: University of North Carolina

text: live

text: Generic

text: soil metagenome

text: soil metagenome

text: Bioreactor slurry


text: University of North Carolina

text: live

text: Generic

text: soil metagenome

text: soil metagenome

text: Untreated soil


text: University of North Carolina

text: live

text: Generic

text: soil metagenome

text: soil metagenome

text: Untreated soil


text: UNIL

text: live

text: Generic

text: The DNA was extracted from a single focal haploid male with Gp-9 big B genotype. The focal male was the son of a queen from a polygynous colony that was originally collected near Athens, Georgia, USA in 2008. Upon transfer to the laboratory, the queen had been isolated with workers and reared as the solitary queen of a colony for one year to ensure that all progeny in the colony were hers.

text: Solenopsis invicta

text: single Gp-9 bigB male from polygynous colony, Georgia, USA


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Chlamydomonas reinhardtii 137c anaerobic dark

text: anaerobic,dark

characteristic: in vivo conditions

text: C. reinhardtii strain CC-124 cells were grown in TAP medium at 24 Celsius, 180 RPM shaking, and under continuous light between 30-60 µmol/m^2*s. Cells were grown in 6 x 1 L TAP to density of 1.7x10^6 cells/ml before being concentrated by centrifugation (5min, 2170xg). All pellets were resuspended in a total of 1 L TAP and distributed to two 500 mL bottles. Sealed bottles were kept in the dark. RNA was isolated from cells collected after 45min (bottle 1) and 120min (bottle 2). RNA samples were pooled in equal proportion for sequencing. Sample provided by Sabeeha Merchant and Anja Hemschemeier.

characteristic: library description

text: RAPID

characteristic: library type

text: Chlamydomonas reinhardtii

characteristic: strain

text: Generic sample from Chlamydomonas reinhardtii


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: Chlamydomonas reinhardtii 137c flagellar regeneration

text: flagellar regeneration

text: C. reinhardtii strain CC-137c cells were subjected to deflagellation. RNA was collected 15, 30, and 45 minutes after deflagellation. Trizol was used to isolate RNA. RNA samples were pooled for sequencing. Sample provided by George Witman and Karl Lechtreck.

text: RAPID

text: Chlamydomonas reinhardtii

characteristic: title


text: live

characteristic: INSDC status

text: Generic

text: Cells resuspended in nitrogen-free TAP medium from 3-day-old TAP plate

text: Chlamydomonas reinhardtii CC-620 and CC-621 zygote life cycle, gametes and zygotes in nitrogen-free medium

characteristic: description

text: gametes (plus and minus) and zygotes

text: Continuous light, 24 degC, TAP-medium plate, and, nitrogen-free TAP liquid medium

text: C. reinhardtii strains CC-620 and CC-621 cells were grown in nitrogen free liquid TAP medium at 22deg Celsius and under continuous light for 24 hours to induce gametogenesis. RNA samples from two duplicates were pooled for sequencing. Sample provided by Ursula Goodenough and Jae-Hyeok Lee.

text: RAPID

text: Chlamydomonas reinhardtii

characteristic: organism

text: pooled

characteristic: sex

text: CC-620 and CC-621

characteristic: strains


characteristic: External Id

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Chlamydomonas reinhardtii 6145C mitotic samples

text: mitosis

text: mitotic

text: C. reinhardtii strain 6145C cells were grown in HSM medium with a light/dark cycle of 14 hours light/ 10 hours dark. RNA from 3 samples representing different stages of mitosis (at 13 hrs light, 13.5 hrs light, and 0.5 hrs dark) were prepared using TRIzol followed by DNase treatment and RNeasy column purification. Equal masses of RNA from the three samples were pooled for sequencing. Sample provided by James Umen and Matt Zones.

text: RAPID

text: Chlamydomonas reinhardtii


text: live

text: Generic

text: Chlamydomonas reinhardtii pooled D66, cc1690 and cc125 sulfur and phosphorus starvation

text: TAP medium depleted of phosphorous or sulfur; continuous light and shaking; 23 degC

characteristic: in vivo conditions

text: C. reinhardtii strains D66 cells were grown in modifed TAP medium with -S at 23 Celsius, 150 RPM shaking, and under continuous light at 90 µmol/m^2*s. RNA was isolated from cells collected at a cell density of 5.0x10^6 cells/ml. C. reinhardtii strains CC-1690 and CC-125 were grown in modifed TAP medium with -P at 25 Celsius, 200 RPM shaking, and under continuous light at 70 µmol/m^2*s. Cells were inoculated into TAP medium at a chlorophyll density of 2.5 mg/ml. RNA was collected from cells after 24 hours of growth. RNA samples were pooled in equal proportion for sequencing. Sample provided by Arthur Grossman.

characteristic: library description

text: RAPID

text: Chlamydomonas reinhardtii


text: live

text: Generic

text: Chlamydomonas reinhardtii, Mix-lowZnFeCuO2-NO3-MM

text: Cells were incubated in the light in Zn-free or Fe-limited TAP, or TAP with NO3 instead of NH4, or in Cu-free minimal medium; for anaerobiosis, cells were incubated in sealed flasks in the dark in TAP

text: Minus Co/Zn: C. reinhardtii strain CC-1021 cells were grown in modified TAP medium with no Co and no Zn at 24 Celsius, 180 RPM shaking, and under continuous light at 120 µmol/m^2*s. RNA was isolated from cells that were collected at a cell density of 2.9x10^6 cells/ml. Fe 0.25ÂµM: C. reinhardtii strain CC-1021 cells were grown in modified TAP medium with 0.25 ÂµM Fe-EDTA at 24 Celsius, 180 RPM shaking, and under continuous light at 90 Âµmol/m^2*s. Cells were transferred to 1ÂµM Fe medium twice prior to experimentation and inoculated in 0.25 ÂµM Fe medium at 1x10^4 cells/ml. RNA was isolated from cells collected at a cell density of 3.0x10^6 cells/ml. Fe 1ÂµM: C. reinhardtii strain CC-1021 cells were grown in modified TAP medium with 1 ÂµM Fe-EDTA at 24 Celsius, 180 RPM shaking, and under continuous light at 90 umol/m^2*s. Cells were transferred to 1ÂµM Fe medium twice prior to experimentation and inoculated in 1 ÂµM Fe medium at 1x10^4 cells/ml. RNA was isolated from cells collected at a cell density of 3.0x10^6 cells/ml. Dark 30 min: C. reinhardtii strain CC-124 cells were grown in TAP medium at 24 Celsius, 140 RPM shaking, and under continuous light at 80 Âµmol/m^2*s. Cells at 4x10^6 cells/ml were transferred to sealed bottles and grown in the dark. RNA was isolated from cells collected after 30 minutes. Dark 2 hrs: C. reinhardtii strain CC-124 cells were grown in TAP medium at 24 Celsius, 140 RPM shaking, and under continuous light at 80 Âµmol/m^2*s. Cells at 4x10^6 cells/ml were transferred to sealed bottles and grown in the dark. RNA was isolated from cells collected after 2 hours. Nitrogen: C. reinhardtii strain CC-1690 cells were grown in TAP medium or TAP -N +KNO3 at 24 Celsius, 140 RPM shaking, and under continuous light at 95 Âµmol/m^2*s. RNA was isolated from cells collected at a cell density of 3.0x10^6 cells/ml. RNA samples from the two nitrogen source samples were pooled to generate one sample. Minus Cu: C. reinhardtii strain CC-1021 cells were grown in modified TAP medium with no Cu at 24 Celsius, 200 RPM shaking, bubbled air, and under continuous light at 90 Âµmol/m^2*s. Cells were transferred to -Cu medium twice prior to experimentation and inoculated at 1x10^4 cells/ml. RNA was isolated from cells collected at a cell density of 3x10^6 cells/ml. The seven RNA samples were pooled in equal proportion for sequencing. Sample provided by Sabeeha Merchant, Anja Hemschemeier, Eugen Urzica, Janette Kropat, Aimee Terauchi and Madeli Castruita.

text: RAPID

characteristic: library type

text: Chlamydomonas reinhardtii

text: CC124(137c) and CC1021(2137)

characteristic: strain


text: Dreyfuss Laboratory, Biochemistry and Biophysics, University of Pennsylvania School of Medicine/HHMI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: HeLa PV cells

characteristic: cell line

characteristic: ip antibody

text: Homo sapiens

text: HeLa PV cells


text: Beijing Genome Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Glycine max

text: Cultivated soybean

characteristic: title


text: Beijing Genome Institute

text: live

text: Generic

text: Glycine max

characteristic: organism

text: Generic sample from Glycine max


characteristic: External Id

text: parasitology laboratory, College of Veterinary Medicine, South China Agricultural University

text: live

text: Generic

text: adult

characteristic: developmental stage

text: Guangzhou, China

characteristic: location

text: Clonorchis sinensis

text: wild cat

characteristic: source

text: total RNA from clonorchis sinensis parasite in wild cats

text: whole worm

characteristic: tissue

text: miRNA_Clonorchis sinensis


Okaloosa Darter

text: University of Florida

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: description

text: Etheostoma okaloosae

text: Okaloosa Darter


Queensland D. melanogaster

text: University of California, Davis Department of Evolution and Ecology

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: A single female fly from each of 20 isofemale lines from Queensland (Cairns and Cooktown)was collected, pooled, and made into DNA.

text: Drosophila melanogaster

text: Genomic differentiation between temperate and tropical Australian populations of Drosophila melanogaster


Tasmania D. melanogaster

text: live

text: Generic

text: A single female from each of 19 isofemale lines from Tasmania (Hillwood and Sorell) was collected, pooled, and made into DNA.

text: Drosophila melanogaster


text: University of East Anglia

text: live

text: Generic

text: leaf

text: Solanum lycopersicum

text: leaf

text: degradome library from Solanum lycopersicum leaf


text: University of East Anglia

text: live

text: Generic

text: flower

text: Solanum lycopersicum

text: flower

text: degradome library from Solanum lycopersicum flower


text: University of East Anglia

text: live

text: Generic

text: green fruit

text: Solanum lycopersicum

text: green fruit 10-15mm

text: degradome library from Solanum lycopersicum green fruit


text: Leiden Genome Technology Center, Human Genetics, Leiden University Medical Center

text: live

text: Generic

text: Gallus gallus

text: 500 ng

characteristic: rna input

text: stage HH16 whole chicken embryo without the heart tube -> totalRNA extraction

characteristic: srek ligation

characteristic: stage

text: whole embryo

text: Stage HH16_whole_Embryo_totRNA_singleRun


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Gallus gallus

text: 120 ng

text: stage HH16 whole chicken embryo without the heart tube -> smallRNA extraction

text: whole embryo

text: Stage HH16_whole_Embryo_smallRNA_singleRun

characteristic: title


characteristic: External Id

text: live

text: Generic

text: Gallus gallus

characteristic: organism

text: 120 ng

text: stage HH16 heart tube -> smallRNA extraction

text: heart tube

text: Stage HH16_Heart_tube_smallRNA_singleRun


text: live

text: Generic

text: Gallus gallus

text: 120 ng

text: whole embryo

text: Stage HH16_whole_Embryo_smallRNA_multilpexRun


text: live

text: Generic

text: Gallus gallus

text: 120 ng

text: heart tube

text: Stage HH16_Heart_tube_smallRNA_multilpexRun


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

characteristic: antibody catalog number

text: Santa Cruz

characteristic: antibody vendor

text: 38B9 cells

characteristic: cell type

characteristic: chip antibody

text: Mus musculus

text: pro-B cell

text: PU.1 - Pro-B cells


characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Santa Cruz

text: 38B9 cells

text: Mus musculus

text: pro-B cell

text: PU.1 - Pro-B cells (replicate)


characteristic: INSDC center name

text: live

text: Generic

text: Santa Cruz

text: C2C12 cells

text: MyoD

text: Mus musculus

text: myotubes

characteristic: strain

text: Myod1 - Myotubes


characteristic: INSDC first public

text: live

text: Generic

text: Santa Cruz

text: C2C12 cells

text: MyoD

text: Mus musculus

text: myotubes

text: Myod1 - Myotubes (replicate)


text: live

text: Generic

text: Abcam

text: V6.5 embryonic stem cells

text: Mus musculus

text: Embryonic stem cells

text: Smad3 - ESC


text: live

text: Generic

text: Abcam

text: V6.5 embryonic stem cells

text: 10 ng/ml

characteristic: concentration

text: Activin

characteristic: drug

text: 1 hr

characteristic: duration of treatment

text: Mus musculus

text: Embryonic stem cells

text: Smad3 Activin - ESC


text: live

characteristic: INSDC status

text: Generic

text: Abcam

text: C2C12 cells

text: 2.5 ng/ml

text: TGFβ

text: 2 hr

text: Mus musculus

text: myotubes

text: Smad3 - Myotubes (replicate)


text: live

text: Generic

text: Abcam

text: C2C12 cells

text: 2.5 ng/ml

text: TGFβ

text: 2 hr

text: Mus musculus

text: myotubes

text: Smad3 - Myotubes

characteristic: title


characteristic: External Id

text: live

text: Generic

text: Abcam

text: 38B9 cells

text: 5.0 ng/ml

text: TGFβ

text: 1 hr

text: Mus musculus

text: pro-B cell

text: Smad3 - Pro-B cells


text: live

text: Generic

text: Abcam

text: 38B9 cells

text: 5.0 ng/ml

text: TGFβ

text: 1 hr

text: Mus musculus

characteristic: organism

text: pro-B cell

text: Smad3 - Pro-B cells (replicate)


text: live

text: Generic

characteristic: antibody catalog number

text: Santa Cruz

text: BGO3 (feeder free)

text: Homo sapiens

text: Embryonic stem cells

text: Oct4 - BGO3


text: live

text: Generic

text: Abcam

characteristic: antibody vendor

text: BGO3 (feeder free)

text: Homo sapiens

text: Embryonic stem cells

text: Smad3 - BGO3


text: live

text: Generic

text: D. Wotton UVA174

characteristic: antibody provider

text: V6.5 embryonic stem cells

characteristic: cell type

text: 10 ng/ml

text: Activin

text: 1 hr

text: Mus musculus

text: Embryonic stem cells

text: Smad2/3 Activin - ESC


characteristic: INSDC last update

text: live

text: Generic

text: Santa Cruz

text: 38B9 cells

text: IgG

characteristic: chip antibody

text: Mus musculus

text: pro-B cell

text: IgG - Pro-B cells


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Santa Cruz

text: C2C12 cells

text: IgG

text: Mus musculus

text: myotubes

text: IgG - Myotubes


characteristic: INSDC center name

text: live

text: Generic

text: BGO3 (feeder free)

text: None (WCE)

text: Homo sapiens

text: Embryonic stem cells

text: WCE - BGO3


text: Emory University

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Tribolium castaneum


text: Lazzaro, Entomology, Cornell University

text: live

text: Generic

text: female

characteristic: gender

text: Anopheles funestus

text: Adult female carcass

text: CNRFP, Burkina Faso

characteristic: strain

text: whole organism

characteristic: tissue


O. fasciatus ovary (454 GS-FLX)

characteristic: External Id

text: Harvard University

text: live

characteristic: INSDC status

text: Generic

text: Species: Oncopeltus fasciatus Tissue: Ovary Sequencing Platform: 454 GS-FLX (1/4 plate)

characteristic: description

text: Oncopeltus fasciatus

text: Oncopeltus fasciatus; Tissue: Ovary

characteristic: title


text: Whitehead Institute for Biomedical Research

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: HeLa

characteristic: time

text: mock

characteristic: transfection


characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: HeLa

text: miR-155 duplex


text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: HeLa

text: miR-1 duplex


text: Bioinformatics, BGI-sz

text: live

text: Generic

characteristic: NCBI submission package

text: Betula pendula

text: leaf extract

characteristic: sample type

text: pooled leaves from various tree species


text: Bioinformatics, BGI-sz

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Acer pseudoplatanus

text: leaf extract

text: pooled leaves from various tree species


text: Fruit tree genomics and molecular biology, College of Horticulture, Nanjing Agricultural University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Citrus trifoliata

text: flowers and fruits

text: flower bud, half-open-flower, open flower, development fruit tissues in different sizes (0.3, 0.5, 0.8, 1, and 1.5 cm in diameter)

text: trifoliate orange


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

text: An outbreak of tuberculosis (n=41) occurred between 2006 and 2008 in a medium-sized British Columbia community. All cultured isolates had identical MIRU-VNTR patterns. The complete genomes of 32 M. tuberculosis outbreak isolates and four isolates with matching genotypes isolated in the region prior to the outbreak were sequenced using Illumina short read sequencing.

text: Mycobacterium

characteristic: genus

characteristic: isolate

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0002

value: pyrazinamide

value: agar dilution


characteristic: External Id

text: Gibbons, MRC Molecular Haematology Unit, Weatherall Institute of Molecular Medicine

text: live

text: Generic

text: ATRX H300 (Santa Cruz Biotechnology, batch G0105)

characteristic: antibody

text: Human Cultured Primary Erythroblasts

characteristic: cell type

text: Homo sapiens

text: Human Cultured Primary Erythroblasts


text: live

characteristic: INSDC status

text: Generic

text: Human Cultured Primary Erythroblasts

text: Homo sapiens

text: Human Cultured Primary Erythroblasts

characteristic: title


text: live

text: Generic

characteristic: cell passage

text: Mouse Embryonic Stem Cells

text: Mus musculus

characteristic: organism

text: Mouse Embryonic Stem Cells

characteristic: strain


text: Applied Biosystems

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: wild type mouse oocyte #1

text: female

characteristic: gender

text: Mus musculus

text: mouse oocyte

text: mixed genetic background of C57BL/6J, 129/sv, MF1

text: wild type mouse oocyte #1_WT_A7


text: Applied Biosystems

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: wild type mouse oocyte #2

text: female

text: Mus musculus

text: mouse oocyte

text: wild type mouse oocyte #2_WT_10


text: Applied Biosystems

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: mouse Dicer knockout oocyte #3

text: female

text: Mus musculus

text: mouse oocyte

text: mouse Dicer knockout oocyte #3_Dicer_2A


text: Applied Biosystems

text: live

text: Generic

characteristic: SRA accession

text: mouse Dicer knockout oocyte #4

text: female

text: Mus musculus

text: mouse oocyte

text: mouse Dicer knockout oocyte #4_Dicer_5


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 2-cell embyro #1

text: female

text: Mus musculus

text: mouse blastomere in a 2-cell embyro

text: MF1 wild type

text: mouse blastomere in 2-cell embyro #1_2cell_A11


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 2-cell embyro #1

text: female

text: Mus musculus

text: mouse blastomere in a 2-cell embyro

text: MF1 wild type

text: mouse blastomere in 2-cell embyro #1_2cell_A12


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 2-cell embyro #2

text: female

text: Mus musculus

text: mouse blastomere in a 2-cell embyro

text: MF1 wild type

text: mouse blastomere in 2-cell embyro #2_2cell_B5


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 2-cell embyro #2

text: female

text: Mus musculus

text: mouse blastomere in a 2-cell embyro

text: MF1 wild type

text: mouse blastomere in 2-cell embyro #2_2cell_B6


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 2-cell embyro #3

text: female

text: Mus musculus

text: mouse blastomere in a 2-cell embyro

text: MF1 wild type

text: mouse blastomere in 2-cell embyro #3_2cell_B7


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 2-cell embyro #3

text: female

text: Mus musculus

text: mouse blastomere in a 2-cell embyro

text: MF1 wild type

text: mouse blastomere in 2-cell embyro #3_2cell_B8


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 2-cell embyro #4

text: female

text: Mus musculus

text: mouse blastomere in a 2-cell embyro

text: MF1 wild type

text: mouse blastomere in 2-cell embyro #4_2cell_B9


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 2-cell embyro #4

text: female

text: Mus musculus

text: mouse blastomere in a 2-cell embyro

text: MF1 wild type

text: mouse blastomere in 2-cell embyro #4_2cell_B10


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 4-cell embyro #1

text: female

text: Mus musculus

text: mouse blastomere in a 4-cell embyro

text: MF1 wild type

text: mouse blastomere in 4-cell embyro #1_4_cell_B1


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 4-cell embyro #1

text: female

text: Mus musculus

text: mouse blastomere in a 4-cell embyro

text: MF1 wild type

text: mouse blastomere in 4-cell embyro #1_4_cell_B2


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 4-cell embyro #2

text: female

text: Mus musculus

text: mouse blastomere in a 4-cell embyro

text: MF1 wild type

text: mouse blastomere in 4-cell embyro #2_4_cell_B5


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 4-cell embyro #2

text: female

text: Mus musculus

text: mouse blastomere in a 4-cell embyro

text: MF1 wild type

text: mouse blastomere in 4-cell embyro #2_4_cell_B6


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 4-cell embyro #3

text: female

text: Mus musculus

text: mouse blastomere in a 4-cell embyro

text: MF1 wild type

text: mouse blastomere in 4-cell embyro #3_4_cell_B9


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 4-cell embyro #3

text: female

text: Mus musculus

text: mouse blastomere in a 4-cell embyro

text: MF1 wild type

text: mouse blastomere in 4-cell embyro #3_4_cell_B10


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 8-cell embyro #1

text: female

text: Mus musculus

text: mouse blastomere in a 8-cell embyro

text: MF1 wild type

text: mouse blastomere in 8-cell embyro #1_8_cell_A1


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 8-cell embyro #1

text: female

text: Mus musculus

text: mouse blastomere in a 8-cell embyro

text: MF1 wild type

text: mouse blastomere in 8-cell embyro #1_8_cell_A4


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 8-cell embyro #2

text: female

text: Mus musculus

text: mouse blastomere in a 8-cell embyro

text: MF1 wild type

text: mouse blastomere in 8-cell embyro #2_8_cell_A5


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 8-cell embyro #2

text: female

text: Mus musculus

text: mouse blastomere in a 8-cell embyro

text: MF1 wild type

text: mouse blastomere in 8-cell embyro #2_8_cell_A6


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 8-cell embyro #3

text: female

text: Mus musculus

text: mouse blastomere in a 8-cell embyro

text: MF1 wild type

text: mouse blastomere in 8-cell embyro #3_8_cell_A9


text: Applied Biosystems

text: live

text: Generic

text: mouse blastomere in 8-cell embyro #3

text: female

text: Mus musculus

text: mouse blastomere in a 8-cell embyro

text: MF1 wild type

text: mouse blastomere in 8-cell embyro #3_8_cell_A15


text: Emory University

text: live

text: Generic

text: Immune-challenge by stabbing with crude LPS contaminated needle.

characteristic: description

text: Tribolium castaneum


<TEST ALIAS>

characteristic: External Id

text: Harvard University

text: live

text: Generic

text: Oncopeltus fasciatus

text: <TEST TITLE>


name: Oncopeltus fasciatus ovarian and embryonic cDNA

text: Harvard University

text: live

text: Generic

text: Oncopeltus fasciatus cDNA (includes samples prepared using a variety of cDNA synthesis protocols and two 454 sequencing platforms).

text: Oncopeltus fasciatus


text: Korean Institute of Science and Technology (KIST)

text: live

text: Generic

text: wastewater metagenome


original DNA pool

text: febit synbio gmbh

text: live

text: Generic

text: Oligonucleotide pool derived from microarrays containing 3918 different variants. Sequences contain a variabel region of 40 bp and sequencing adaptors for Roche/454 and Illumina/GAII sequencing. Total length 170 bp.

text: synthetic construct

text: emPCR amplified oligonucleotides from microarray


"Megacloned" and enriched DNA pool

text: febit synbio gmbh

text: live

text: Generic

text: DNA pool containing amplicons of 319 DNA fragments selected and specifically extracted from a 454/Roche GS FLX platform post sequencing.

text: synthetic construct

text: amplicons of DNA fragments derived from 454/Roche GS FLX post sequencing


text: Instituto de Investigação Cientifica Tropical

text: live

text: Generic

text: Quercus suber


Blood DNA

text: Max Planck Institute for Molecular Genetics

text: live

text: Generic

text: Homo sapiens

text: Patient control blood DNA


Tumor DNA

text: live

text: Generic

text: Homo sapiens

text: Patient tumor DNA


text: MPIMG

text: live

text: Generic

text: Homo sapiens


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Truepera radiovictrix DSM 17093

text: Truepera radiovictrix DSM 17093

text: DSM 17093

text: Generic sample from Truepera radiovictrix DSM 17093


text: University of Georgia

text: live

text: Generic

text: Cultivar Bailey ESTs from leaf, root and seed combined. Not Normalized. Mid tag TCTCTATGCG.

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV Bailey


text: University of Georgia

text: live

text: Generic

text: Cultivar Overo chiquito ESTs from leaf, root and seed combined. Not Normalized. Mid tag TGATACGTCT

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV Overo chiquito


text: University of Georgia

text: live

text: Generic

text: Cultivar Dixie Giant ESTs from leaf, root and seed combined. Not Normalized. Mid tag CATAGTAGTG

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV Dixie Giant


text: University of Georgia

text: live

text: Generic

text: Cultivar Florida 07 ESTs from leaf, root and seed combined. Not Normalized. Mid tag CGAGAGATAC

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV Florida 07


text: University of Georgia

text: live

text: Generic

text: Cultivar Florunner ESTs from leaf, root and seed combined. Not Normalized. Mid tag ATACGACGTA

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV Florunner


text: University of Georgia

text: live

text: Generic

text: Cultivar Georgia Green ESTs from leaf, root and seed combined. Not Normalized. Mid tag TCACGTACTA

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV Georgia Green


text: University of Georgia

text: live

text: Generic

text: Cultivar Georgia Valencia ESTs from leaf, root and seed combined. Not Normalized. Mid tag CGTCTAGTAC

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV Georgia Valencia


text: University of Georgia

text: live

text: Generic

text: Cultivar GKBSPSC30062 ESTs from leaf and root combined. Not Normalized. Mid tag TCTACGTAGC

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV GKBSPSC30062


text: University of Georgia

text: live

text: Generic

text: Cultivar Gregory ESTs from leaf, root and seed combined. Not Normalized. Mid tag TGTACTACTC

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV Gregory


text: University of Georgia

text: live

text: Generic

text: Cultivar NC3033 ESTs from leaf, root and seed combined. Not Normalized. Mid tag ACGACTACAG

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV NC3033


text: University of Georgia

text: live

text: Generic

text: Cultivar New Mexico Valencia A ESTs from leaf, root and seed combined. Not Normalized. Mid tag CGTAGACTAG

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV New Mexico Valencia A


text: University of Georgia

text: live

text: Generic

text: Cultivar Olin ESTs from leaf, root and seed combined. Not Normalized. Mid tag TACGAGTATG

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV Olin


text: University of Georgia

text: live

text: Generic

text: Cultivar SPT06_6 ESTs from leaf, root and seed combined. Not Normalized. Mid tag TACTCTCGTG

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV SPT06_6


text: University of Georgia

text: live

text: Generic

text: Cultivar SSD6 ESTs from leaf and roots combined. Not Normalized. Mid tag TAGAGACGAG

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV SSD6


text: University of Georgia

text: live

text: Generic

text: Cultivar Sunoleic ESTs from leaf, root and seed combined. Not Normalized. Mid tag TCGTCGCTCG

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV Sunoleic


text: University of Georgia

text: live

text: Generic

text: Cultivar Basse ESTs from leaf, root and seed combined. Not Normalized. Mid tag ACATACGCGT

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV Basse


text: University of Georgia

text: live

text: Generic

text: Cultivar C76-16 ESTs from leaf, root and seed combined. Not Normalized. Mid tag ACGCGAGTAT

text: Arachis hypogaea

text: 454 Sequencing of Peanut ESTs CV C76-16


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Sample take at 6 days at 55 deg C

text: metagenomes

text: Generic sample from metagenomes


text: live

text: Generic

text: Sample take at 16 days at 40 deg C

text: metagenomes

text: Generic sample from metagenomes


text: live

text: Generic

text: Sample take at 16 days at 55 deg C

text: metagenomes

text: Generic sample from metagenomes


text: live

text: Generic

text: Sample take at 30 days at 40 deg C

text: metagenomes

text: Generic sample from metagenomes


text: live

text: Generic

text: Sample take at 30 days at 55 deg C

text: metagenomes

text: Generic sample from metagenomes


text: live

text: Generic

text: Sample take at 6 days at 40 deg C

text: metagenomes

text: Generic sample from metagenomes


text: live

text: Generic

text: Methanohalobium evestigatum Z-7303

text: Methanohalobium evestigatum Z-7303

text: Generic sample from Methanohalobium evestigatum Z-7303


text: UNIL

text: live

text: Generic

text: The DNA was extracted from a pool of 10 haploid males with Gp-9 big B genotype. All males are the sons of a queen from a polygynous colony that was originally collected near Athens, Georgia, USA in 2008. Upon transfer to the laboratory, the queen had been isolated with workers and reared as the solitary queen of a colony for one year to ensure that all progeny in the colony were hers.

text: Solenopsis invicta

text: Pool of 10 Gp-9 big B males from a polygynous colony, Georgia, USA


text: UNIL

text: live

text: Generic

text: The DNA was extracted from a pool of 31 haploid males with Gp-9 big B genotype. All males are the sons of a queen from a polygynous colony that was originally collected near Athens, Georgia, USA in 2008. Upon transfer to the laboratory, the queen had been isolated with workers and reared as the solitary queen of a colony for one year to ensure that all progeny in the colony were hers.

text: Solenopsis invicta

text: Pool of 31 Gp-9 big B males from a polygynous colony, Georgia, USA


text: Philip Wong, Neuropathology, Johns Hopkins University

text: live

text: Generic

text: 21 days of age

characteristic: age

text: nontransgenic

characteristic: genotype/variation

text: Mus musculus

text: spinal cord

text: C57BL/6; SJL


text: live

characteristic: INSDC status

text: Generic

text: 21 days of age

text: transgenic

text: Mus musculus

text: spinal cord

text: C57BL/6; SJL


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: Abcam AB3594

characteristic: antibody catalog number

text: MEF

characteristic: cell type

characteristic: chip antibody

text: Mus musculus

text: Mouse embryonic fibroblasts

text: ChIP-Seq for H3K79me2 in MEF (B7)

characteristic: title


characteristic: INSDC last update

text: live

text: Generic

text: Abcam AB3594

text: MEF

text: Mus musculus

characteristic: organism

text: Mouse embryonic fibroblasts

text: ChIP-Seq for H3K79me2 in MEF (B6)


text: live

text: Generic

characteristic: NCBI submission model

text: Covance MMS-126R

text: MEF

text: RNA Pol II (8WG16)

text: Mus musculus

text: Mouse embryonic fibroblasts

text: ChIP-Seq for RNA Pol2 in MEF (B4)


characteristic: INSDC center name

text: live

text: Generic

text: Covance MMS-126R

text: MEF

text: RNA Pol II (8WG16)

text: Mus musculus

text: Mouse embryonic fibroblasts

text: ChIP-Seq for RNA Pol2 in MEF (B6)


text: live

text: Generic

characteristic: NCBI submission package

text: Abcam AB818

text: V6.5 embryonic stem cells

text: TBP

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for TBP in mES cells (B2)


characteristic: INSDC first public

text: live

text: Generic

text: Abcam AB818

text: V6.5 embryonic stem cells

text: TBP

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for TBP in mES cells (B6)


characteristic: INSDC secondary accession

text: live

text: Generic

text: MEF

text: Mus musculus

text: Mouse embryonic fibroblasts

text: WCE in MEF (B5)


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

characteristic: SRA accession

text: An outbreak of tuberculosis (n=41) occurred between 2006 and 2008 in a medium-sized British Columbia community. All cultured isolates had identical MIRU-VNTR patterns. The complete genomes of 32 M. tuberculosis outbreak isolates and four isolates with matching genotypes isolated in the region prior to the outbreak were sequenced using Illumina short read sequencing.

text: Mycobacterium

characteristic: genus

characteristic: isolate

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0003


characteristic: External Id

text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Escherichia coli STEC_H.I.8

characteristic: strain

text: Escherichia coli STEC_H.1.8


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

characteristic: INSDC status

text: CAN

text: Generic

characteristic: description

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0004


text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0005


text: Baylor College of Medicine

text: live

text: Generic

text: Homo sapiens

text: paired-end, 36-mer sequencing

characteristic: sequencing protocol

text: Prostate adenocarcinoma

text: Prostate cancer tissue

characteristic: tissue

text: Gleason score 7

characteristic: tumor stage


text: Baylor College of Medicine

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate adenocarcinoma

text: Prostate cancer tissue

characteristic: title

text: Gleason score 6


text: Baylor College of Medicine

text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

characteristic: organism

text: paired-end, 36-mer sequencing

text: Prostate adenocarcinoma

text: Prostate cancer tissue

text: Gleason score 9


text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate adenocarcinoma

text: Prostate cancer tissue

text: Gleason score 8


text: Baylor College of Medicine

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate matched normal of C02

text: Normal prostate tissue


text: Baylor College of Medicine

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate matched normal of C03

text: Normal prostate tissue


text: Baylor College of Medicine

text: live

text: Generic

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate matched normal of C06

text: Normal prostate tissue


text: Baylor College of Medicine

text: live

text: Generic

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate matched normal of C08

text: Normal prostate tissue


text: Baylor College of Medicine

text: live

text: Generic

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate matched normal of C09

text: Normal prostate tissue


text: Baylor College of Medicine

text: live

text: Generic

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate matched normal of C11

text: Normal prostate tissue


text: Baylor College of Medicine

text: live

text: Generic

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate matched normal of C13

text: Normal prostate tissue


text: Baylor College of Medicine

text: live

text: Generic

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate matched normal of C15

text: Normal prostate tissue


text: Baylor College of Medicine

text: live

text: Generic

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate matched normal of C19

text: Normal prostate tissue


text: Baylor College of Medicine

text: live

text: Generic

text: Homo sapiens

text: paired-end, 36-mer sequencing

text: Prostate matched normal of C23

text: Normal prostate tissue


text: Simon Fraser Univeristy

text: live

text: Generic

characteristic: isolate

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0006


characteristic: External Id

text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0007


text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0008


text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0009


text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0010


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

text: Mycobacterium

characteristic: genus

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0011


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

characteristic: INSDC status

text: CAN

text: Generic

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0012


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Arcobacter nitrofigilis DSM 7299

characteristic: description

text: Arcobacter nitrofigilis DSM 7299

text: DSM 7299

characteristic: strain

text: Generic sample from Arcobacter nitrofigilis DSM 7299


pedunculate oak Library O

text: INRA

text: live

text: Generic

text: Quercus robur leaves infected by oidium (Erysiphe alpitoides) (24 and 48 hours after innoculation). The number of genotype is 64 (8 individuals per 8 families). The library was prepared by V. Leger, C. Burban and ML Lousteau.

text: Quercus robur

text: Quercus robur biotic stress


text: Insititute of Hydrobiology

text: live

text: Generic

characteristic: average insert size

text: juvenile

characteristic: developmental stage

text: Hypophthalmichthys nobilis

text: juvenie bighead carp tissue

characteristic: standard deviation

text: mix of heart, liver, spleen, kidney, brain

characteristic: tissue


text: Insititute of Hydrobiology

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: juvenile

text: Hypophthalmichthys molitrix

text: juvenie silver carp tissue

characteristic: title


PINCTADA MARGARITIFERA OYSTER

text: skuldtech

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: PINCTADA MARGARITIFERA OYSTER EST library

text: Pinctada margaritifera

characteristic: organism


PINCTADA MARGARITIFERA OYSTER_1

text: skuldtech

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Pinctada margaritifera


characteristic: External Id

text: Centers for Disease Control and Prevention

text: live

text: Generic

text: Isolated from a human in 1956 in Georgia, USA.

text: Bordetella bronchiseptica


text: live

characteristic: INSDC status

text: Generic

text: Isolated from a human in 2007 in Mississippi, USA.

text: Bordetella bronchiseptica


pedunculate oak Library OT

text: INRA

text: live

text: Generic

text: Quercus robur control leaves (24 and 48 hours). 64 genotypes (8 individuals per 8 families). The library was prepared by V. Leger, C. Burban and ML Lousteau.

characteristic: description

text: Quercus robur


text: Sunney Xie, Chemistry, Harvard University

text: live

text: Generic

text: Escherichia coli

text: Escherichia coli

text: DY330 (W3110)

characteristic: strain

text: time point 0

text: rifampicin time point 0

characteristic: treatment group


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli

text: DY330 (W3110)

text: time point 2

text: rifampicin time point 2


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli

text: DY330 (W3110)

text: time point 4

text: rifampicin time point 4


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli

text: DY330 (W3110)

text: time point 6

text: rifampicin time point 6


text: live

text: Generic

text: Escherichia coli

text: Escherichia coli

text: DY330 (W3110)

text: time point 8

text: rifampicin time point 8


pedunculate oak Library P

text: INRA

text: live

text: Generic

text: Quercus robur leaves and phytophtora (Phytophthora cinnamoni) (24 and 48 hours after innoculation). 64 genotypes (8 individuals per 8 families). The library was prepared by V. Leger, C. Burban and ML Lousteau.

text: Quercus robur

text: Quercus robur biotic stress


text: Boffelli, Center for Genetics, CHORI

text: live

text: Generic

text: young adult

characteristic: age

text: neutrophil

characteristic: cell type

text: male

characteristic: gender

text: Homo sapiens

text: whole blood


text: Boffelli, Center for Genetics, CHORI

characteristic: INSDC last update

text: live

text: Generic

text: young adult

text: neutrophil

text: male

text: Pan troglodytes

text: whole blood


text: Boffelli, Center for Genetics, CHORI

text: live

text: Generic

characteristic: NCBI submission model

text: young adult

text: leukocyte

text: male

text: Pongo pygmaeus

text: whole blood

text: orang


pedunculate oak Library PT

text: INRA

text: live

text: Generic

text: Quercus robur control leaves (24 and 48 hours after innoculation). 64 genotypes (8 individuals per 8 families). The library was prepared by V. Leger, C. Burban and ML Lousteau.

text: Quercus robur

text: Quercus robur biotic stress

characteristic: title


pedunculate oak Library I

text: INRA

characteristic: INSDC center name

text: live

text: Generic

text: Quercus robur leaves and Lymentria dispar (3 and 24 hours after innoculation). 64 genotypes (8 individuals per 8 families). The library was prepared by V. Leger, C. Burban and ML Lousteau.

text: Quercus robur

text: Quercus robur biotic stress


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

characteristic: NCBI submission package

text: An outbreak of tuberculosis (n=41) occurred between 2006 and 2008 in a medium-sized British Columbia community. All cultured isolates had identical MIRU-VNTR patterns. The complete genomes of 32 M. tuberculosis outbreak isolates and four isolates with matching genotypes isolated in the region prior to the outbreak were sequenced using Illumina short read sequencing.

text: Mycobacterium

characteristic: genus

characteristic: isolate

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0013


pedunculate oak Library IT

text: INRA

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: Quercus robur control leaves (3 and 24 hours after innoculation). 64 genotypes (8 individuals per 8 families). The library was prepared by V. Leger, C. Burban and ML Lousteau.

text: Quercus robur

characteristic: organism

text: Quercus robur biotic stress


text: 31086182; 35780211

characteristic: External Id

text: Simon Fraser Univeristy

text: live

characteristic: INSDC status

text: CAN

text: Generic

characteristic: SRA accession

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0014


text: Simon Fraser Univeristy

text: live

text: Generic

characteristic: description

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0015


text: CSHL

text: live

text: Generic

text: Ginkgo biloba

text: Ginkgo cDNA


Culex erythrothorax

text: San Diego State University

text: live

text: Generic

text: The sample was collected from San Diego Zoo Wild Animal Park in collaboration with the Wildlife Disease Labs, San Diego Zoo's Institute for Conservation Research.

text: Culex erythrothorax

text: Viral Metagenomics


text: Bartel lab, Whitehead Institute

text: live

text: Generic

text: HeLa

characteristic: cell line

text: Degradome

characteristic: data type

text: Homo sapiens

characteristic: rnai treatment

text: HeLa cell

text: HeLa Degradome 1


text: Bartel lab, Whitehead Institute

characteristic: INSDC last update

text: live

text: Generic

text: HeLa

text: Degradome

text: Homo sapiens

text: HeLa cell

text: HeLa Degradome 2


text: Bartel lab, Whitehead Institute

text: live

text: Generic

characteristic: NCBI submission model

text: HeLa

text: Degradome

text: Homo sapiens

text: HeLa cell

text: HeLa Degradome 3


text: Bartel lab, Whitehead Institute

text: live

text: Generic

text: HeLa

text: Degradome

text: Homo sapiens

text: HeLa cell

text: HeLa Degradome 4

characteristic: title


text: Bartel lab, Whitehead Institute

characteristic: INSDC center name

text: live

text: Generic

text: HeLa

text: Degradome

text: Homo sapiens

text: HeLa cell

text: HeLa Degradome 5


text: Bartel lab, Whitehead Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Degradome

text: Homo sapiens

text: Whole Brain

text: brain

characteristic: tissue

text: Whole Brain Degradome 1


text: Bartel lab, Whitehead Institute

text: live

text: Generic

text: Degradome

text: Homo sapiens

text: Whole Brain

text: brain

text: Whole Brain Degradome 2


text: Bartel lab, Whitehead Institute

text: live

text: Generic

text: Degradome

text: Homo sapiens

text: Whole Brain

text: brain

text: Whole Brain Degradome 3


text: Bartel lab, Whitehead Institute

text: live

text: Generic

text: small RNAs

text: Danio rerio

text: Embryo Cells

text: embryo

text: Zebrafish Embryo small RNAs


text: Bradley Bernstein Lab, Massachusetts General Hospital, Harvard Medical School and Broad Institute

text: live

text: Generic

characteristic: antibody

characteristic: antibody catalog number

characteristic: antibody lot number

text: Millipore

characteristic: antibody manufacturer

text: ES cells line

characteristic: cell type

text: Mus musculus

text: Embryonic stem cells

text: H3K4me3 ChIP-Seq-10K ESC


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Millipore

text: Bone marrow isolated

text: Mus musculus

characteristic: organism

text: Hematopoietic stem and progenitor cells

text: H3K4me3 ChIP-Seq-LSK cells R1


text: live

text: Generic

characteristic: SRA accession

text: Millipore

text: Bone marrow isolated

text: Mus musculus

text: Hematopoietic stem and progenitor cells

text: H3K4me3 ChIP-Seq-LSK cells R2


characteristic: INSDC last update

text: live

text: Generic

text: Millipore

text: Bone marrow isolated

text: Mus musculus

text: Hematopoietic stem and progenitor cells

text: H3K27me3 ChIP-Seq-LSK cells R1


text: live

text: Generic

characteristic: NCBI submission model

text: Millipore

text: Bone marrow isolated

text: Mus musculus

text: Hematopoietic stem and progenitor cells

text: H3K27me3 ChIP-Seq-LSK cells R2


text: live

text: Generic

text: Abcam

text: Bone marrow isolated

text: Mus musculus

text: Hematopoietic stem and progenitor cells

text: H3K36me3 ChIP-Seq-LSK cells R1

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: Abcam

text: Bone marrow isolated

text: Mus musculus

text: Hematopoietic stem and progenitor cells

text: H3K36me3 ChIP-Seq-LSK cells R2


text: CSHL

text: live

text: Generic

characteristic: NCBI submission package

text: Cycas rumphii

text: Cycas rumphii 134 cDNA


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

characteristic: description

text: Mycobacterium

characteristic: genus

characteristic: isolate

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0016


text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0035


Globular Stage Whole Seed

text: UCLA Dept of Molecular Cell and Developmental Biology

text: live

text: Generic

text: Globular stage soybean whole seed from cultivar Williams 82.

text: Glycine max

text: Soybean c.v. Williams 82 Globular Stage Whole Seed


Early Maturation Stage Whole Seed

text: live

text: Generic

text: Early maturation stage whole seed

text: Glycine max

text: Early Maturation Stage Soybean Whole Seed (cv. Williams 82)


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Escherichia coli STEC_7v

characteristic: strain

text: E.coli STEC_7v


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Methylosinus trichosporium OB3b

text: Methylosinus trichosporium OB3b

text: Generic sample from Methylosinus trichosporium OB3b


text: Brigham Young University

text: live

text: Generic

text: Artemisia tridentata

text: Leaf sample for Mountain type (ssp. vaseyana)


text: Wisconsin National Primate Research Center

text: live

text: Generic

text: 190 bp sequences from exon 2 of rhesus macaque MHC class I cDNA

text: Macaca mulatta

text: India

characteristic: origin

text: Rhesus macaque MHC class I cDNA sequences


text: live

text: Generic

text: Macaca mulatta

text: China


text: live

text: Generic

text: Macaca mulatta

text: indian rhesus macaque default


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

text: An outbreak of tuberculosis (n=41) occurred between 2006 and 2008 in a medium-sized British Columbia community. All cultured isolates had identical MIRU-VNTR patterns. The complete genomes of 32 M. tuberculosis outbreak isolates and four isolates with matching genotypes isolated in the region prior to the outbreak were sequenced using Illumina short read sequencing.

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0017


text: CSHL

text: live

text: Generic

text: Ginkgo biloba

text: Ginkgo biloba 112 cDNA


text: CSHL

text: live

text: Generic

text: Ginkgo biloba

text: Ginkgo biloba 82 cDNA


text: Brigham Young University

text: live

text: Generic

text: Artemisia tridentata

text: ESTs of leaf tissue from big sagebrush (A. tridentata ssp. tridentata)


text: University of California - Davis, Drosophila Population Genomics Project

text: live

text: Generic

text: A Drosophila melanogaster genome that is isogenic for the X chromosome (extracted with a balancer) from an isofemale line established from a single inseminated female collected in Malawi, Africa.

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


text: live

text: Generic

text: A Drosophila melanogaster genome that is isogenic for chromosome 2 (extracted with a balancer) from an isofemale line established from a single inseminated female collected in Malawi, Africa.

text: Drosophila melanogaster


text: live

text: Generic

text: A Drosophila melanogaster genome that is isogenic for chromosome 3 (extracted with a balancer) from an isofemale line established from a single inseminated female collected in Malawi, Africa.

text: Drosophila melanogaster


text: live

text: Generic

text: Genome of an inbred (20 generations of sib-mating) line of Drosophila melanogaster derived from a stock established from a single inseminated female collected in Raleigh, NC in 2003; see Jordan, KW, et al. Genome Biology, 2007.

text: Drosophila melanogaster


text: CSHL

text: live

text: Generic

text: Cycas rumphii

text: Cycas rumphii 133 cDNA


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0018


text: live

text: Generic

text: Syntrophothermus lipocalidus DSM 12680

text: Syntrophothermus lipocalidus DSM 12680

text: DSM 12680

text: Generic sample from Syntrophothermus lipocalidus DSM 12680


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0019


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0020


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0021


text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0022


text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0023


text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0024


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

text: An outbreak of tuberculosis (n=41) occurred between 2006 and 2008 in a medium-sized British Columbia community. All cultured isolates had identical MIRU-VNTR patterns. The complete genomes of 32 M. tuberculosis outbreak isolates and four isolates with matching genotypes isolated in the region prior to the outbreak were sequenced using Illumina short read sequencing.

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0025


text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0026


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Generic sample from Desulfonatronospira thiodismutans ASO3-1


text: University of Chicago

text: live

text: Generic

characteristic: antibody

text: Abcam

characteristic: antibody vendor

text: Arabidopsis thaliana

text: Leaf tissue

text: Rosette leaves prior to bolting

characteristic: stage

text: Columbia 2x

text: rosette leaf

characteristic: tissue


characteristic: External Id

text: University of Chicago

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Arabidopsis thaliana

text: Leaf tissue

text: Rosette leaves prior to bolting

text: Columbia 2x

text: rosette leaf

text: input DNA


characteristic: GOLD Stamp ID

text: Gram-

characteristic: Gram Staining

characteristic: Greengenes ID

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: free living

characteristic: biotic relationship

text: Keywords: GSC:MIGS:2.1

characteristic: investigation type

text: Alicycliphilus denitrificans BC

characteristic: organism

text: Alicycliphilus denitrificans BC

characteristic: project name

text: JCM 14587

text: facultative

text: BC

text: Mesophile

characteristic: temperature range

text: Alicycliphilus denitrificans BC, complete genome.


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: Escherichia coli STEC_94C

characteristic: strain

text: Escherichia coli STEC_94C

characteristic: title


characteristic: External Id

text: Stunnenberg, Molecular Biology, NCMLS Radboud University Nijmegen

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: wild type

characteristic: genotype

text: 07-441 Upstate antibody

characteristic: h3k9me2 antibody

text: Drosophila melanogaster

text: 3rd instart Drosophila larvae


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: EHMT-KO

text: 07-441 Upstate antibody

text: Drosophila melanogaster

text: 3rd instart Drosophila larvae

text: Drosophila_larvae_EHMT-KO_H3K9me2_ChIP-Seq


text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Escherichia coli O91:H21 str. B2F1

text: Escherichia coli STEC_B2F1


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

characteristic: description

text: Mycobacterium

characteristic: genus

characteristic: isolate

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0027


text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis isolate MT0028


text: Simon Fraser Univeristy

characteristic: INSDC center name

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0029


text: Simon Fraser Univeristy

text: live

text: Generic

characteristic: NCBI submission package

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0030


text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0031


text: National Center for Genome Resources

text: live

text: Generic

text: Oryza sativa Japonica Group

text: Generic sample from Oryza sativa Japonica Group


text: live

text: Generic

text: Escherichia coli STEC_C165-02

characteristic: strain

text: Escherichia coli STEC_C165-02


text: 31086182; 35780211

text: Simon Fraser Univeristy

text: live

text: CAN

text: Generic

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0032

characteristic: title


characteristic: External Id

text: Simon Fraser Univeristy

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0033


text: Simon Fraser Univeristy

characteristic: INSDC first public

text: live

text: Generic

text: An outbreak of tuberculosis (n=41) occurred between 2006 and 2008 in a medium-sized British Columbia community. All cultured isolates had identical MIRU-VNTR patterns. The complete genomes of 32 M. tuberculosis outbreak isolates and four isolates with matching genotypes isolated in the region prior to the outbreak were sequenced using Illumina short read sequencing.

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0034


text: Simon Fraser Univeristy

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis isolate MT0036


text: live

text: Generic

text: Escherichia coli STEC_DG131-3

text: Escherichia coli STEC_DG131-3


text: live

text: Generic

text: Escherichia coli G58-1

text: Escherichia coli G58-1


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Desulfarculus baarsii DSM 2075

text: Desulfarculus baarsii DSM 2075

text: DSM 2075

text: Generic sample from Desulfarculus baarsii DSM 2075


text: Floragenex

text: live

text: Generic

text: Hordeum vulgare subsp. vulgare

text: Pooled sequence data from OWB RAD sequencing experiments


text: DOE-CSP 2010

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Gram+

characteristic: Gram Staining

text: live

text: Generic

text: Yes

characteristic: Type Strain

text: Rod-shaped

characteristic: cell shape

text: Japan: Kobe City

characteristic: country

text: Keywords: GSC:MIGS:2.1

characteristic: investigation type

text: Soil from Kobe City, Japan

characteristic: isolation site

text: soil

characteristic: isolation-source

text: 34.690 N 135.195 E

characteristic: lat lon

text: Motile

characteristic: motility

text: Paenibacillus curdlanolyticus YK9

text: Paenibacillus curdlanolyticus YK9

characteristic: project name

text: ATCC 51898, DSM 10247

text: aerobe

text: Generic sample from Paenibacillus curdlanolyticus YK9

text: type strain of Paenibacillus curdlanolyticus

characteristic: type material


name: Alexandrium catenella ACT03 initiation phase cells

text: CNRS/UNIVERSITE MONTPELLIER 2

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: The RNA sample was obtained from cells collected during the initiation phase of growth (or lag phase). Stationary phase cells were inoculated into a new culture medium, and then, cells were sampled for several times in the next hours during the light phase: sampling was carried out 3:00 and 5:30 hours after inoculation on the first day, and on the second day, 20:00, 21:30, 23:00, 24:30 and 25:30 hours after inoculation.

characteristic: description

text: Alexandrium catenella

characteristic: organism

text: Alexandrium catenella

characteristic: title


characteristic: External Id

text: Kunming Insititute of Zoology, Chinese Academy of Sciences

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: Bombyx mori Dazao (P50 strain); silkworm_p50_Biol.Rep1

text: 5th-instar larvae

characteristic: dev stage

text: Bombyx mori

text: Dazao

characteristic: strain

text: silk gland

characteristic: tissue

text: Bombyx mori Dazao biological replicate 1


text: National Center for Genome Resources

text: live

text: Generic

text: Burkholderia glumae

text: Burkholderia glumae


text: National Center for Genome Resources

text: live

text: Generic

text: Medicago truncatula

text: Medicago truncatula


text: British Antarctic Survey

text: live

text: Generic

text: All animals used in experimental work were collected at Rothera Research Station, Adelaide Island, Antarctic Peninsula (67o 34׳ 07״ S, 68o 07׳ 30״ W) by SCUBA divers during the austral summer at depths of 10-15m. The animals were immediately returned to the laboratory where they were maintained in a through-flow aquarium with a temperature of 0.6*0.3oC, under a simulated natural light:dark cycle. All animals were mature adults, with a range of shell sizes between 50.1-83.5mm. As shell length is related to animal age: surface aging estimates using growth rings produced an mean age of 8.3 years (SE mean 0.207) with a range from 6-14 years, with a median of 8 years. Mantle tissue was dissected from the animals and immediately flash frozen in liquid nitrogen for later RNA extraction.

text: Laternula elliptica

characteristic: shell length


text: Genetics and Genome Sciences, University of Connecticut Health Center

text: live

text: Generic

text: RT and size selection

characteristic: library selection

text: RNA

characteristic: library source

text: Paired-End RNA-seq

characteristic: library strategy

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole fly


text: Genetics and Developmental Biology, University of Connecticut Health Center

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: RT and size selection

text: RNA

text: Paired-End RNA-seq

text: Drosophila sechellia

text: Drosophila sechellia

text: whole fly


Spirogyra pratensis

text: University of Maryland

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Background The large and diverse land plant lineage is nested within a clade of fresh water green algae, the charophytes. Collection of genome-scale data for plants and other organisms over the past decade has invigorated the field of evolutionary biology. One of the core questions in the field asks: how did a colonization event by a green algae over 450 mya lead to one of the most successful lineages on the tree of life? This question can best be answered using the comparative method, the first step of which is to gather genome-scale data across closely related lineages to land plants. Before sequencing an entire genome it is useful to first gather transcriptome data: it is less expensive, it targets the coding regions of the genome, and provides gene models for future genome sequencing. We built Expressed Sequence Tag (EST) libraries for two charophyte species, Coleochaete orbicularis (Coleochaetales) and Spirogyra pratensis (Zygnematales). We used both Sanger sequencing and next generation 454 sequencing to cover as much of the transcriptome as possible. Results Our sequencing effort for Spirogyra pratensis yielded 9,984 5’ Sanger reads plus 598,460 GS FLX Standard 454 sequences; Coleochaete orbicularis yielded 4,992 5’ Sanger reads plus 673,811 GS FLX Titanium 454 sequences. After clustering S. pratensis yielded 12,000 unique transcripts, or unigenes, and C. orbicularis yielded 19,000. Both transcriptomes were very plant-like, i.e. most of the transcriptome were more similar to streptophytes (plants + charophyte green algae) than to other green algae in the sister chlorophyte. BLAST results of several plant genes hypothesized to be important in early land plant evolution resulted in high quality hits in both libraries revealing putative orthologs ripe for follow-up studies. Conclusions Two main conclusions were drawn from this study. One illustrates the utility of next generation sequencing for transcriptome studies: larger scale data collection at a lower cost enabled us to cover a considerable portion of the transcriptome for both species. And, two, that the charophyte green algal proteomes are remarkably plant-like, which gives them the unique capacity to be major players for future evolutionary genomic studies addressing origin of land plant questions.

text: Spirogyra pratensis

text: Spirogyra pratensis


Coleochaete orbicularis

text: University of Maryland

text: live

text: Generic

text: Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes

characteristic: description

text: Coleochaete orbicularis

characteristic: organism

text: Coleochaete orbicularis

characteristic: title