text: Scripps Translational Science Institute

text: live

text: Generic

text: mixed DNA library

text: Unnatural Base Pair Lost - 10^24fold Amplification


status: PUBLIC

characteristic: External Id

text: Scripps Translational Science Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: mixed DNA library

characteristic: organism

text: Unnatural Base Pair Retained - 10^24fold Amplification

characteristic: title


control

text: Scripps Translational Science Institute

text: live

text: Generic

text: mixed DNA library

text: no amplification, direct sequencing


text: Agricultural Biotechnology, Seoul National University

text: live

text: Generic

tag: attribute

characteristic: culture time

text: wild type

characteristic: genotype

text: Burkholderia glumae BGR1

text: Bacteria culture, BGR1, 6hr

characteristic: strain

text: mRNAs from Burkholderia glumae BGR1 wild type after 6hr LB liquid culture


text: live

text: Generic

text: BGR1 tofI::Ω mutant

text: Burkholderia glumae

text: Bacteria culture, BGS2, 6hr

text: mRNAs from Burkholderia glumae BGS2 (BGR1 tofI::Ω) mutant after 6hr LB liquid culture


text: live

text: Generic

text: BGR1 qsmR::Ω mutant

text: Burkholderia glumae

text: Bacteria culture, BGS9, 6hr

text: mRNAs from Burkholderia glumae BGS9 (BGR1 qsmR::Ω) mutant after 6hr LB liquid culture


text: live

text: Generic

text: wild type

text: Burkholderia glumae BGR1

text: Bacteria culture, BGR1, 10hr

text: mRNAs from Burkholderia glumae BGR1 wild type after 10hr LB liquid culture


text: live

text: Generic

text: BGR1 tofI::Ω mutant

text: Burkholderia glumae

text: Bacteria culture, BGS2, 10hr

text: mRNAs from Burkholderia glumae BGS2 (BGR1 tofI::Ω) mutant after 10hr LB liquid culture


text: live

text: Generic

text: BGR1 qsmR::Ω mutant

text: Burkholderia glumae

text: Bacteria culture, BGS9, 10hr

text: mRNAs from Burkholderia glumae BGS9 (BGR1 qsmR::Ω) mutant after 10hr LB liquid culture


text: TGEN

text: live

text: Generic

text: Staphylococcus aureus


text: Instituto Politecnico Nacional-Centro de Biotecnologia Genomica

text: live

text: Generic

text: mature mycelia

characteristic: dev-stage

text: Phaseolus vulgaris Pinto UI-114

characteristic: lab-host

text: Macrophomina phaseolina

text: HSS-48 h of M. phaseolina-P. vulgaris


text: Institute of Marine Research

text: live

text: Generic

text: Gadus morhua

text: spawned, unfertilized egg

characteristic: tissue-type

text: lccoc


characteristic: External Id

text: Institute of Marine Research

text: live

text: Generic

text: Gadus morhua

text: 2-cell stage embryo (405 mpf at 7C)

text: lccot


text: Institute of Marine Research

characteristic: INSDC center name

text: live

text: Generic

text: Gadus morhua

text: blastula stage embryo (22-56 hpf at 7C)

text: lccob


text: Institute of Marine Research

characteristic: INSDC first public

text: live

text: Generic

text: Gadus morhua

text: gastrula stage embryo (56-113 hpf at 7C)

text: lccga


Salmonella Montevideo FSL S5-403

text: Cornell University

characteristic: INSDC last update

text: live

text: Generic

text: Salmonella enterica subsp. enterica serovar Montevideo str. S5-403

text: Montevideo

characteristic: serovar

text: enterica

characteristic: sub species

text: SOLiD data Salmonella Montevideo FSL S5-403


text: Mak Lab, Stowers Institute for Medical Research

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: wild type

characteristic: genotype/variation

text: Caenorhabditis elegans

text: 48hrs after L1

characteristic: stage

text: No

characteristic: tap treatment

text: whole animal

characteristic: tissue


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: rde-10 mutant

text: Caenorhabditis elegans

characteristic: organism

text: 48hrs after L1

text: No

text: whole animal

characteristic: title


characteristic: External Id

text: live

text: Generic

text: rde-11 mutant

text: Caenorhabditis elegans

text: 48hrs after L1

text: No

text: whole animal


characteristic: INSDC center name

text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: 48hrs after L1

text: Yes

text: whole animal


characteristic: INSDC first public

text: live

text: Generic

text: rde-10 mutant

text: Caenorhabditis elegans

text: 48hrs after L1

text: Yes

text: whole animal


characteristic: INSDC last update

text: live

text: Generic

text: rde-11 mutant

text: Caenorhabditis elegans

text: 48hrs after L1

text: Yes

text: whole animal


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: actinobacterium SCGC AAA027-L06

characteristic: description

text: actinobacterium SCGC AAA027-L06

characteristic: strain

text: Generic sample from actinobacterium SCGC AAA027-L06


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: collection date

text: starvation 3 hours

characteristic: environment (feature)

text: South Africa

text: Cryptococcus neoformans RCT29

text: unknown host strain

characteristic: specific host

text: Generic sample from Cryptococcus neoformans RCT29


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans CCPT22

text: unknown host strain

text: Generic sample from Cryptococcus neoformans CCPT22


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans RCT18

text: unknown host strain

text: Generic sample from Cryptococcus neoformans RCT18


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans RCT35

text: unknown host strain

text: Generic sample from Cryptococcus neoformans RCT35


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans CCPT20

text: unknown host strain

text: Generic sample from Cryptococcus neoformans CCPT20


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans CCPT32

text: unknown host strain

text: Generic sample from Cryptococcus neoformans CCPT32


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans RCT38

text: unknown host strain

text: Generic sample from Cryptococcus neoformans RCT38


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans RCT39

text: unknown host strain

text: Generic sample from Cryptococcus neoformans RCT39


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans CCPT10

text: unknown host strain

text: Generic sample from Cryptococcus neoformans CCPT10


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans RCT47

text: unknown host strain

text: Generic sample from Cryptococcus neoformans RCT47


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans RCT8

text: unknown host strain

text: Generic sample from Cryptococcus neoformans RCT8


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans CCPT35

text: unknown host strain

text: Generic sample from Cryptococcus neoformans CCPT35


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans CCPT2

text: unknown host strain

text: Generic sample from Cryptococcus neoformans CCPT2


text: Broad Institute

text: live

text: Generic

text: starvation 3 hours

text: South Africa

text: Cryptococcus neoformans RCT48

text: unknown host strain

text: Generic sample from Cryptococcus neoformans RCT48


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Buccal

characteristic: body site

text: NPR

text: Buccal

characteristic: histological type

text: Yes

characteristic: is technical control

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design

text: Health and Retirement Study (HRS)

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Buccal of a human female participant in the dbGaP study Health and Retirement Study (HRS)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: DNA

text: Buccal

text: NPR

text: Buccal

text: Yes

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: male

text: Prospective Longitudinal Cohort

text: Health and Retirement Study (HRS)

text: Non-tumor DNA sample from Buccal of a human male participant in the dbGaP study Health and Retirement Study (HRS)

characteristic: title


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Buccal

characteristic: body site

text: NPR

text: Buccal

characteristic: histological type

text: No

text: SNP/CNV Genotypes (imputed)

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

text: Health and Retirement Study (HRS)


text: dbGaP

text: live

text: Generic

text: DNA

text: Buccal

text: NPR

text: Buccal

text: No

characteristic: is tumor

text: SNP/CNV Genotypes (imputed)

characteristic: molecular data type

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design

text: Health and Retirement Study (HRS)

characteristic: study name

characteristic: submitted sample id


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: DNA

text: upper arm

text: AAS

text: primary fibroblasts

text: SNP Genotypes (NGS)

text: Homo sapiens

text: female

text: Case-Control

text: Werner Syndrome

characteristic: study disease

text: Yes

characteristic: subject is affected

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from upper arm of a human female participant in the dbGaP study Next Generation Mendelian Genetics: Atypical Werner Syndrome


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: arm

characteristic: body site

text: AAS

text: Lymphoblastoid cell line

characteristic: histological type

text: SNP Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: male

text: Case-Control

text: Werner Syndrome

text: Yes

text: DNA sample from arm of a human male participant in the dbGaP study Next Generation Mendelian Genetics: Atypical Werner Syndrome

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: arm

text: AAS

text: Lymphoblastoid cell line

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

characteristic: study design

text: Werner Syndrome

text: Next Generation Mendelian Genetics: Atypical Werner Syndrome

characteristic: study name

text: Yes

characteristic: submitted sample id


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: arm

text: AAS

text: Lymphoblastoid cell line

text: SNP Genotypes (NGS)

text: Homo sapiens

text: female

text: Case-Control

text: Werner Syndrome

characteristic: study disease

text: Yes

characteristic: subject is affected

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from arm of a human female participant in the dbGaP study Next Generation Mendelian Genetics: Atypical Werner Syndrome


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: arm

characteristic: body site

text: AAS

text: blood

characteristic: histological type

text: SNP Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: female

text: Case-Control

text: Werner Syndrome

text: Yes

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: arm

text: AAS

text: blood

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

characteristic: study design

text: Werner Syndrome

characteristic: study name

text: Yes

characteristic: submitted sample id


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: upper arm

text: AAS

text: primary fibroblasts

text: SNP Genotypes (NGS)

text: Homo sapiens

text: female

text: Case-Control

text: Werner Syndrome

characteristic: study disease

text: Yes

characteristic: subject is affected

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: GRU

text: CNV Genotypes

text: SNP Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: Case-Control

text: Centenarian

text: Yes

text: DNA sample from a human participant in the dbGaP study NHLBI and NIA The New England Centenarian Study (NECS)

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: GRU

text: CNV Genotypes

characteristic: molecular data type

text: SNP Genotypes (NGS)

text: Homo sapiens

text: Case-Control

characteristic: study design

text: Centenarian

text: NHLBI and NIA The New England Centenarian Study (NECS)

characteristic: study name

text: Yes

characteristic: submitted sample id


characteristic: External Id

text: Yamagata University

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: nondormant, pre-sprouting stage

characteristic: dev-stage

text: Dioscorea japonica

text: bulbil

characteristic: tissue-type

text: Dioscorea japonica bulbil nondormant, pre-sprouting stage


N8 NF3

text: ETH Zurich

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: human gut metagenome

text: Human fecal sample


N8 NF4

text: ETH Zurich

text: live

text: Generic

text: human gut metagenome

characteristic: organism

text: Human fecal sample


N8 NF5

text: ETH Zurich

text: live

text: Generic

text: human gut metagenome

text: Human fecal sample

characteristic: title


text: Yijun Qi's lab, National Institute of Biological Sciences

characteristic: INSDC secondary accession

text: live

text: Generic

text: whole cell

characteristic: cell compartment

text: three weeks

characteristic: development

text: Arabidopsis thaliana

text: small RNA

characteristic: rna subtype

text: three weeks seedlings

text: Columbia-0 wild type

characteristic: strain

text: seedlings

characteristic: tissue

text: small RNAs from whole cell extract, Col-0 three weeks seedlings


characteristic: External Id

text: live

characteristic: INSDC status

text: Generic

text: cytoplasmic

text: three weeks

text: Arabidopsis thaliana

text: small RNA

text: three weeks seedlings

text: Columbia-0 wild type

text: seedlings

text: small RNAs from cytoplasmic extract, Col-0 three weeks seedlings


characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: nuclear

text: three weeks

text: Arabidopsis thaliana

text: small RNA

text: three weeks seedlings

text: Columbia-0 wild type

text: seedlings

text: small RNAs from nuclear extract, Col-0 three weeks seedlings


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Coprinopsis cinerea AmutBmut pab1-1

characteristic: description

text: Coprinopsis cinerea AmutBmut pab1-1

characteristic: sample number

text: AmutBmut pab1-1

text: Generic sample from Coprinopsis cinerea AmutBmut pab1-1


text: Pathology, BWH

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Histone H3 Lysine 9/14 acetylation

characteristic: antibody target

characteristic: cell line

text: NUT Midline Carcinoma cell line

characteristic: cell type

text: Homo sapiens

text: female

characteristic: sex


text: Pathology, BWH

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: IgG control

text: NUT Midline Carcinoma cell line

text: Homo sapiens

characteristic: organism

text: female

text: IgG

characteristic: title


characteristic: External Id

text: TGEN

text: live

text: Generic

text: Staphylococcus aureus


B73 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

characteristic: INSDC status

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. B73 RNA-Seq


B97 RNA-Seq (NSF-CNV)

text: Iowa State University

characteristic: INSDC center name

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. B97 RNA-Seq


CML103 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

characteristic: NCBI submission model

text: Zea mays

text: Zea mays ssp. mays L. CML103 RNA-Seq


CML228 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

characteristic: NCBI submission package

text: Zea mays

text: Zea mays ssp. mays L. CML228 RNA-Seq


CML247 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. CML247 RNA-Seq


CML277 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. CML277 RNA-Seq


CML322 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. CML322 RNA-Seq


CML333 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. CML333 RNA-Seq


CML52 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. CML52 RNA-Seq


CML69 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. CML69 RNA-Seq


text: Emory University

text: live

text: Generic

text: Bacillus anthracis

text: Vegetative bacterial cells, cold challenged

text: Sterne 34F2

characteristic: strain

text: B. anthracis cold-challenged cells (bottom strand)

text: cold challenge

characteristic: treatment


text: Emory University

characteristic: INSDC first public

text: live

text: Generic

text: Bacillus anthracis

text: Vegetative bacterial cells, control

text: Sterne 34F2

text: B. anthracis vegeative cell control (bottom strand)

text: control


text: Emory University

characteristic: INSDC last update

text: live

text: Generic

text: Bacillus anthracis

text: Vegetative bacterial cells, ethanol challenged

text: Sterne 34F2

text: B. anthracis ethanol-challenged cells (bottom strand)

text: ethanol challenge


text: Emory University

text: live

text: Generic

text: Bacillus anthracis

text: Vegetative bacterial cells, osmotically challenged

text: Sterne 34F2

text: B. anthracis osmotically-challenged cells (bottom strand)

text: osmotic challenge


Hp301 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. Hp301 RNA-Seq


IL14H RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. IL14H RNA-Seq


Ki11 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. Ki11 RNA-Seq


Ki3 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. Ki3 RNA-Seq


text: TGEN

text: live

text: Generic

text: Staphylococcus aureus


Ky21 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. Ky21 RNA-Seq


M162W RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. M162W RNA-Seq


M37W RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. M37W RNA-Seq


Mo17 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. Mo17 RNA-Seq


Mo18W RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. Mo18W RNA-Seq


Ms71 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. Ms71 RNA-Seq


NC350 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. NC350 RNA-Seq


NC358 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. NC358 RNA-Seq


Oh43 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. Oh43 RNA-Seq


Oh7B RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. Oh7B RNA-Seq


P39 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. P39 RNA-Seq


Tx303 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. Tx303 RNA-Seq


Tzi8 RNA-Seq (NSF-CNV)

text: Iowa State University

text: live

text: Generic

text: Zea mays

text: Zea mays ssp. mays L. Tzi8 RNA-Seq


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Candida albicans GC75

characteristic: sample name

text: Generic sample from Candida albicans GC75


text: Broad Institute

text: live

text: Unclassified bacteria hmp_mda_pilot_jcvi_0005

characteristic: Isolate, name or label

text: Generic

text: Generic

text: Unclassified bacteria hmp_mda_pilot_jcvi_0010

text: Homo sapiens

characteristic: specific host

text: Generic sample from Lactobacillales bacterium hmp_mda_pilot_jcvi_0010


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Candida albicans P37039

text: Generic sample from Candida albicans P37039


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Generic sample from Veillonellaceae bacterium ORNL_6EZ3_F_Cy59


text: Broad Institute

text: live

text: Generic

text: Generic

text: Candida albicans SC5314

characteristic: organism

text: Generic sample from Candida albicans SC5314


text: Broad Institute

text: live

text: Generic

text: Generic

text: Unclassified bacteria hmp_mda_pilot_jcvi_0015

text: Homo sapiens

text: Generic sample from Clostridiales bacterium hmp_mda_pilot_jcvi_0015

characteristic: title


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Unclassified bacteria hmp_mda_pilot_jcvi_0006

text: Homo sapiens

text: Generic sample from Clostridiales bacterium hmp_mda_pilot_jcvi_0006


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Unclassified bacteria hmp_mda_pilot_jcvi_0014

text: Homo sapiens

text: Generic sample from Flavobacteriia bacterium hmp_mda_pilot_jcvi_0014


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Dorea sp. hmp_mda_pilot_jcvi_0005

text: Homo sapiens

text: hmp mda pilot jcvi 0005, hmp_mda_pilot_jcvi_0005

characteristic: strains

text: Generic sample from Dorea sp. hmp_mda_pilot_jcvi_0005


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: Unclassified bacteria hmp_mda_pilot_jcvi_0011

text: Homo sapiens

text: hmp mda pilot jcvi 0011

text: Generic sample from Lachnospiraceae bacterium hmp_mda_pilot_jcvi_0011


text: Broad Institute

text: live

text: Generic

text: Generic

text: Unclassified bacteria hmp_mda_pilot_jcvi_0009

text: Homo sapiens

characteristic: strain

text: Generic sample from Clostridiales bacterium hmp_mda_pilot_jcvi_0009


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Candida albicans P87

text: Generic sample from Candida albicans P87


text: Broad Institute

characteristic: INSDC last update

text: live

text: Unclassified bacteria hmp_mda_pilot_jcvi_0005

text: Generic

text: Generic

text: Unclassified bacteria hmp_mda_pilot_jcvi_0016

text: Homo sapiens

text: hmp mda pilot jcvi 0016

text: Generic sample from Lachnospiraceae bacterium hmp_mda_pilot_jcvi_0016


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Female

characteristic: host sex

text: Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-96

text: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-96


text: Broad Institute

text: live

text: Generic

text: Generic

text: Female

text: Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-88

characteristic: sample name

text: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_10_Pl1-88


text: Broad Institute

text: live

characteristic: Isolate, name or label

text: Generic

text: Generic

text: Unclassified bacteria hmp_mda_pilot_jcvi_0012

text: Homo sapiens

characteristic: specific host

text: hmp mda pilot jcvi 0012

text: Generic sample from Ruminococcaceae bacterium hmp_mda_pilot_jcvi_0012


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Generic sample from Veillonellaceae bacterium ORNL_6EZ3_F_Cy55


text: Broad Institute

text: live

text: Generic

text: Generic

text: Dorea sp. hmp_mda_pilot_jcvi_0013

characteristic: organism

text: Unclassified bacteria hmp_mda_pilot_jcvi_0013

text: Homo sapiens

text: hmp mda pilot jcvi 0013

text: Generic sample from Dorea sp. hmp_mda_pilot_jcvi_0013

characteristic: title


Tomato var Heinz RNA-Seq

characteristic: External Id

text: Sistemas Genomicos

text: live

characteristic: INSDC status

text: Generic

text: RNA-Seq data from tomato var Heinz.

characteristic: description

text: Solanum lycopersicum

text: Tomato var Heinz RNA-Seq data. SOLiD sequencing


text: Johns Hopkins University School of Medicine Center for Epigenetics

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: Queens and workers were derived from eggs produced by a single-drone inseminated honeybee queen that belonged to a standard research stock with restricted genetic background and were left to develop into two-day old larvae within the hive. Subsequently, larvae at this crucial point in the divergent development of queen and worker traits, were either allowed to develop into worker pupae or, for queen pupae development, they were manually grafted into queen cells and raised as previously described. On the day before emergence (the day of sample collection), queen and worker pupae were transferred into an incubator at 33 °C, 65-70 % relative humidity. For all bees, individuals from both experiments were collected directly into 2ml of 80 % ice-cold ethanol and stored at 4 °C until the central brains were dissected (&lt; 48 h). Following dissections, central brains were immediately transferred into liquid N2 and stored at -80 °C until further use. Libraries of queen/worker and reverted nurse/forager samples were created using TruSeq DNA library preparation kits (Illumina) with some modification to the standard protocol. Genomic DNA samples were prepared by homogenizing pools of whole brains. For queen/worker samples, 5 pools of 8 brains per pool were prepared. Genomic DNA was extracted from homogenized brains using either Masterpure kit from Epicentre (queen/worker), or lysing cells in Chaos buffer (4.5M Guanidinium thiocyanate, 2% N- lauroylsarcosine, 50mM EDTA, 25mM Tris-HCl, 0.1M b-Mercaptoethanol) and purified with Qiagen DNeasy columns (reverted nurse/forager). For all samples, Genomic DNA was sheared to an average size of 350 bp using a Covaris sonicator with the following settings: Duty cycle = 10%, Intensity = 5.0, Bursts per second = 200, Duration = 60 sec. Blunt ends were created on the DNA fragments using a unique protocol to eliminate the introduction of non-genomic cytosines into the fragments, which would be falsely interpreted as unmethylated cytosines during subsequent analysis. To achieve this, we only used A, G and T nucleotides with a mixture of the enzymes T4 DNA polymerase, Klenow DNA polymerase and T4 PNK(NEB) to perform end repair of fragments. Illumina adapters were then ligated to the fragments after the addition of a single A, per TruSeq protocol. Libraries were then size selected by cutting a 400-500 bp fragment from an agraose gel (Bio-Rad-Certified Low Range Ultra Agarose, NEB-100 bp DNA Ladder, Invitrogen-SYBR® Gold nucleic acid gel stain) and purified using Qiagen MinElute Gel Extraction Kit. The purified libraries were then bisulfite converted and purified using Zymo EZ DNA Methylation Gold. Libraries were then amplified using a mixture of Uracil insensitive polymerases; Denville Choice Taq and Agilent Turbo Pfu. Queen/worker samples were amplified for 12 cycles and reverted nurse/forager for 15 cycles using the TruSeq PCR conditions.

text: Apis mellifera

text: Pool of 8 queen honeybee brains (1 of 5)


text: live

text: Generic

characteristic: NCBI submission package

text: Apis mellifera

text: Pool of 8 queen honeybee brains (2 of 5)


characteristic: INSDC first public

text: live

text: Generic

text: Apis mellifera

text: Pool of 8 queen honeybee brains (3 of 5)


characteristic: INSDC last update

text: live

text: Generic

text: Apis mellifera

text: Pool of 8 queen honeybee brains (4 of 5)


text: live

text: Generic

text: Apis mellifera

text: Pool of 8 queen honeybee brains (5 of 5)


text: live

text: Generic

text: Apis mellifera

text: Pool of 8 worker honeybee brains (1 of 5)


text: live

text: Generic

text: Apis mellifera

text: Pool of 8 worker honeybee brains (2 of 5)


text: live

text: Generic

text: Apis mellifera

text: Pool of 8 worker honeybee brains (3 of 5)


text: live

text: Generic

text: Apis mellifera

text: Pool of 8 worker honeybee brains (4 of 5)


text: live

text: Generic

text: Apis mellifera

text: Pool of 8 worker honeybee brains (5 of 5)


text: People's Hospital of Jiangyin City

text: live

text: Generic

text: Homo sapiens

text: chronic myeloid leukemia blood from human s1, in early disease

text: chronic myeloid leukemia blood

characteristic: tissue


RNASeq tomato Heinz

text: Sistemas Genomicos

text: live

text: Generic

text: RNASeq data from tomato (var Heinz). Equimolar amounts of total RNA from different tomato tissues were used. These included young leaves, old leaves, roots, stemps, flowers at different developmental stages and fruit at different developmental stages. Sample was sequenced in a SOLiD platform. Fragment libraries. Single-end sequencing. 50nt reads

text: Rubinisphaera brasiliensis

text: International Tomato Genome Sequencing Consortium - RNASeq from tomato var Heinz


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: batch

text: James Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cells received from the James Thomson laboratory. Cells are from the H1 line and are differentiated into neural progenitor cells.

text: Publication in progress

characteristic: differentiation method

text: Embryonic stem cell differentiated into neural progenitor cells

characteristic: differentiation stage

characteristic: line

text: Embryonic Stem Cell

characteristic: lineage

text: Publication in progress

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Shin Lin, Stanford University

text: Primary Tissue

text: Autopsy

characteristic: collection method

text: Adrenal Gland tissue

characteristic: description

characteristic: donor age

text: Caucasian

characteristic: donor ethnicity

text: polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)

characteristic: donor health status

characteristic: donor id

text: male

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Adrenal Gland

characteristic: tissue type

text: Generic sample from Homo sapiens

characteristic: title


text: Johns Hopkins University School of Medicine Center for Epigenetics

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Two colonies were initially prepared for nurse and forager rearing. They each consisted of 6000-7000 newly emerged (0-24 h old) workers born to five sister queens of our standard research stock and a wild-type queen of Californian commercial origin. To ensure the unequivocal identification of the bees, all individuals were paint-marked (TestorsTM) on the thorax. After a solid foraging pattern was established, foragers were paint-marked (TestorsTM) on the abdomen for the purpose of tracking their life history. The behavioral reversion was carried out essentially as described before1. This reversion resulted in two forager-derived colonies and two nurse-derived colonies. Young brood of Californian commercial origin was provided to the colonies as incentive for reversal from foraging to nursing behavior. Bees of three groups were collected 12-14 days after the reversion: 1. Continuous foragers: forager bees that had not reverted to nursing behavior; 2. Reverted nurse bees: forager bees that exhibited nurse-like behavior (head in brood cells, sluggish response to a flight challenge) in the brood area; 3. Continuous nurses: bees that had never been observed foraging and exhibited at least one nurse-like behavioral trait at the time of collection. For all bees, individuals from both experiments were collected directly into 2ml of 80 % ice-cold ethanol and stored at 4 °C until the central brains were dissected (&lt; 48 h). Following dissections, central brains were immediately transferred into liquid N2 and stored at -80 °C until further use. Libraries of queen/worker and reverted nurse/forager samples were created using TruSeq DNA library preparation kits (Illumina) with some modification to the standard protocol. Genomic DNA samples were prepared by homogenizing pools of whole brains. For queen/worker samples, 5 pools of 8 brains per pool were prepared. Genomic DNA was extracted from homogenized brains using either Masterpure kit from Epicentre (queen/worker), or lysing cells in Chaos buffer (4.5M Guanidinium thiocyanate, 2% N- lauroylsarcosine, 50mM EDTA, 25mM Tris-HCl, 0.1M b-Mercaptoethanol) and purified with Qiagen DNeasy columns (reverted nurse/forager). For all samples, Genomic DNA was sheared to an average size of 350 bp using a Covaris sonicator with the following settings: Duty cycle = 10%, Intensity = 5.0, Bursts per second = 200, Duration = 60 sec. Blunt ends were created on the DNA fragments using a unique protocol to eliminate the introduction of non-genomic cytosines into the fragments, which would be falsely interpreted as unmethylated cytosines during subsequent analysis. To achieve this, we only used A, G and T nucleotides with a mixture of the enzymes T4 DNA polymerase, Klenow DNA polymerase and T4 PNK(NEB) to perform end repair of fragments. Illumina adapters were then ligated to the fragments after the addition of a single A, per TruSeq protocol. Libraries were then size selected by cutting a 400-500 bp fragment from an agraose gel (Bio-Rad-Certified Low Range Ultra Agarose, NEB-100 bp DNA Ladder, Invitrogen-SYBR® Gold nucleic acid gel stain) and purified using Qiagen MinElute Gel Extraction Kit. The purified libraries were then bisulfite converted and purified using Zymo EZ DNA Methylation Gold. Libraries were then amplified using a mixture of Uracil insensitive polymerases; Denville Choice Taq and Agilent Turbo Pfu. Queen/worker samples were amplified for 12 cycles and reverted nurse/forager for 15 cycles using the TruSeq PCR conditions.

text: Apis mellifera

text: Pool of 6 reverted nurse brains (1 of 6)


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: Apis mellifera

text: Pool of 6 reverted nurse brains (2 of 6)


text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Apis mellifera

text: Pool of 6 reverted nurse brains (3 of 6)


text: live

text: Generic

characteristic: description

text: Apis mellifera

text: Pool of 6 reverted nurse brains (4 of 6)


text: live

text: Generic

text: Apis mellifera

text: Pool of 6 reverted nurse brains (5 of 6)


text: live

text: Generic

text: Apis mellifera

text: Pool of 6 reverted nurse brains (6 of 6)


text: live

text: Generic

text: Apis mellifera

text: Pool of 6 forager brains (1 of 6)


text: live

text: Generic

text: Apis mellifera

text: Pool of 6 forager brains (2 of 6)


text: live

text: Generic

text: Apis mellifera

text: Pool of 6 forager brains (3 of 6)


text: live

text: Generic

text: Apis mellifera

text: Pool of 6 forager brains (4 of 6)


text: live

text: Generic

text: Apis mellifera

text: Pool of 6 forager brains (5 of 6)


text: live

text: Generic

text: Apis mellifera

text: Pool of 6 forager brains (6 of 6)


CEN.PK113-7D genome sequencing

text: Delft University of Technology

text: live

text: Generic

text: Saccharomyces cerevisiae CEN.PK113-7D is widely used for metabolic engineering and systems biology research in industry and academia.

text: Saccharomyces cerevisiae CEN.PK113-7D

characteristic: strain

text: Saccharomyces cerevisiae CEN.PK113-7D


text: J. Craig Venter Institute

text: live

text: Generic

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

characteristic: biosamplemodel

text: not determined

characteristic: collection date

text: 454 Titanium Fragments

text: not determined

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geographic location

text: not determined

text: Homo sapiens

characteristic: host

characteristic: host taxid

text: not determined

characteristic: isolation and growth condition

text: biological product [ENVO:02000043]

characteristic: material

text: Synovial Fluid

characteristic: misc_param: HMP body site

text: airways

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

characteristic: number of replicons

text: Actinomyces naeslundii str. Howell 279

text: Actinomyces naeslundii Howell 279, ATCC 12104

characteristic: project name

text: Reference Genome

text: not determined

characteristic: reference for biomaterial

text: not determined

characteristic: sequencing method

characteristic: sop

text: ATCC 12104, CCUG 2238, DSM 43013

characteristic: source material identifiers

text: 'Howell 279'

text: MIGS Cultured Bacterial/Archaeal sample from Actinomyces naeslundii 'Howell 279'


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 454 Titanium Fragments

characteristic: description

text: Streptococcus pyogenes UTSW-2

characteristic: organism

characteristic: strain

text: Generic sample from Streptococcus pyogenes UTSW-2

characteristic: title


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA40634

text: Generic sample from Streptococcus pyogenes GA40634


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes UTMEM-1

text: Generic sample from Streptococcus pyogenes UTMEM-1


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA41046

text: Generic sample from Streptococcus pyogenes GA41046


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA41345

text: Generic sample from Streptococcus pyogenes GA41345


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA06023

text: Generic sample from Streptococcus pyogenes GA06023


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA19681

text: Generic sample from Streptococcus pyogenes GA19681


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA40468

text: Generic sample from Streptococcus pyogenes GA40468


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA19700

text: Generic sample from Streptococcus pyogenes GA19700


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA41039

text: Generic sample from Streptococcus pyogenes GA41039


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA41208

text: Generic sample from Streptococcus pyogenes GA41208


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA41394

text: Generic sample from Streptococcus pyogenes GA41394


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA40377

text: Generic sample from Streptococcus pyogenes GA40377


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA40056

text: Generic sample from Streptococcus pyogenes GA40056


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA03805

text: Generic sample from Streptococcus pyogenes GA03805


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA03455

text: Generic sample from Streptococcus pyogenes GA03455


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA03799

text: Generic sample from Streptococcus pyogenes GA03799


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA40884

text: Generic sample from Streptococcus pyogenes GA40884


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA03747

text: Generic sample from Streptococcus pyogenes GA03747


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA19702

text: Generic sample from Streptococcus pyogenes GA19702


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium Fragments

text: Streptococcus pyogenes GA16797

text: Generic sample from Streptococcus pyogenes GA16797


text: J. Craig Venter Institute

text: live

text: Generic

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

characteristic: biosamplemodel

text: not determined

characteristic: collection date

text: Illumina Paired-Ends

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft32x;143

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Actinomyces sp. ICM47

text: Actinomyces sp. ICM47

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

text: BEI HM-760

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Actinomyces sp. ICM47


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Celera Assembler v. 6.1

text: terrestrial biome [ENVO:00000446]

text: Generic

text: not determined

text: Illumina Paired-Ends

characteristic: description

text: Level 2: High-Quality Draft31x;15

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: not determined

text: Oribacterium parvum ACB8

characteristic: organism

text: Oribacterium sp. ACB8

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

characteristic: sop

text: BEI HM-770

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Oribacterium sp. ACB8

characteristic: title


text: J. Craig Venter Institute

text: live

text: Generic

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

characteristic: biosamplemodel

text: not determined

characteristic: collection date

text: Illumina Paired-Ends

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft33x;47

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Prevotella sp. MSX73

text: Prevotella sp. MSX73

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

text: BEI HM-771

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Prevotella sp. MSX73


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CA v6.1

text: terrestrial biome [ENVO:00000446]

text: Generic

text: not determined

text: Illumina Paired-Ends

characteristic: description

text: Level 2: High-Quality Draft32x;49

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: oral

text: not determined

text: not determined

text: Selenomonas sp. FOBRC9

characteristic: organism

text: Selenomonas sp. FOBRC9

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

characteristic: sequencing method

characteristic: sop

text: BEI HM-774

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Selenomonas sp. FOBRC9


text: J. Craig Venter Institute

text: live

text: Generic

text: Newbler 2.6

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

characteristic: biosamplemodel

text: not determined

characteristic: collection date

text: Illumina Paired-Ends

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft290x;223

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Selenomonas sp. FOBRC6

text: Selenomonas sp. FOBRC6

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

text: BEI HM-773

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Selenomonas sp. FOBRC6

characteristic: title


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

text: terrestrial biome [ENVO:00000446]

text: Generic

text: not determined

text: Illumina Paired-Ends

characteristic: description

text: not determined

text: Level 2: High-Quality Draft

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: Originally submitted as Atopobium sp. ICM58 but changed to Actinomyces sp. ICM58 in April 2016

characteristic: note

text: not determined

text: not determined

text: Actinomyces sp. ICM58

characteristic: organism

text: Atopobium sp. ICM58

characteristic: project name

text: Reference Genome

text: not determined

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-761

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Atopobium sp. ICM58


text: J. Craig Venter Institute

text: live

text: Generic

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

characteristic: biosamplemodel

text: not determined

characteristic: collection date

text: Illumina Paired-Ends

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft32.6x;19

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Campylobacter sp. FOBRC14

text: Campylobacter sp. FOBRC14

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

text: BEI HM-762

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Campylobacter sp. FOBRC14

characteristic: title


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CA v6.1

text: terrestrial biome [ENVO:00000446]

text: Generic

text: not determined

text: Illumina Paired-Ends

characteristic: description

text: Level 2: High-Quality Draft32.5x;38

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: oral

text: not determined

text: not determined

text: Lachnoanaerobaculum sp. ICM7

characteristic: organism

text: Lachnospiraceae bacterium sp. ICM7

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

characteristic: sequencing method

characteristic: sop

text: BEI HM-768

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Lachnospiraceae bacterium ICM7


text: J. Craig Venter Institute

text: live

text: Generic

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

characteristic: biosamplemodel

text: not determined

characteristic: collection date

text: Illumina Paired-Ends

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft32.1x;52

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geographic location

text: not determined

text: Homo sapiens

characteristic: host

characteristic: host taxid

text: not determined

characteristic: isolation and growth condition

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

characteristic: number of replicons

text: Peptostreptococcaceae bacterium AS15

text: Eubacterium sp. AS15

text: Reference Genome

text: not determined

characteristic: reference for biomaterial

text: Illumina HiSeq 2000

text: BEI HM-766

characteristic: source material identifiers

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Eubacterium sp. AS15


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Illumina Paired-Ends

characteristic: description

text: Klebsiella sp. OBRC7

characteristic: organism

text: Peptostreptococcaceae bacterium OBRC8

characteristic: title


text: J. Craig Venter Institute

text: live

text: Generic

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

characteristic: biosamplemodel

text: not determined

characteristic: collection date

text: Illumina Paired-Ends

text: not determined

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: not determined

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Actinomyces sp. ICM39

text: Actinomyces sp. ICM39

characteristic: project name

text: Reference Genome

text: not determined

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-759

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Actinomyces sp. ICM39


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

text: not determined

text: Illumina Paired-Ends

characteristic: description

text: Level 2: High-Quality Draft16.6x;55

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: oral

text: not determined

text: not determined

text: Clostridium sp. MSTE9

characteristic: organism

text: Clostridium sp. MSTE9

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

text: BEI HM-764

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Clostridium sp. MSTE9

characteristic: title


text: J. Craig Venter Institute

text: live

text: Generic

text: CA v6.1

text: terrestrial biome [ENVO:00000446]

text: Generic

characteristic: biosamplemodel

text: not determined

characteristic: collection date

text: Illumina Paired-Ends

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft121x;162

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geographic location

text: not determined

text: Homo sapiens

characteristic: host

characteristic: host taxid

text: not determined

characteristic: isolation and growth condition

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

characteristic: number of replicons

text: Peptoanaerobacter stomatis

text: Eubacteriaceae bacterium sp. OBRC8

characteristic: project name

text: Reference Genome

text: not determined

characteristic: reference for biomaterial

text: Illumina HiSeq 2000

characteristic: sequencing method

characteristic: sop

text: BEI HM-765

characteristic: source material identifiers

text: MIGS Cultured Bacterial/Archaeal sample from Eubacteriaceae bacterium OBRC8


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

characteristic: biosamplemodel

text: not determined

characteristic: collection date

text: Illumina Paired-Ends

characteristic: description

characteristic: estimated size

text: Level 2: High-Quality Draft33x;17

text: not determined

characteristic: geo loc name

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

text: oral

text: not determined

text: not determined

text: Streptococcus sp. BS35b

characteristic: organism

text: Streptococcus sp. BS35b

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

text: BEI HM-776

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Streptococcus sp. BS35b

characteristic: title


mau12 cornell reads

characteristic: External Id

text: University of Rochester

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: 29.4 million 86-bp paired end reads with insert size of 200 bp.

text: Drosophila mauritiana

text: Drosophila mauritiana mau12w


text: J. Craig Venter Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: Generic

text: not determined

text: Illumina Paired-Ends

characteristic: feature

text: Level 2: High-Quality Draft32x;19

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: host taxid

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Streptococcus sp. AS14

text: Streptococcus sp. AS14

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

characteristic: sequencing method

characteristic: sop

text: BEI HM-777

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Streptococcus sp. AS14


Drosophila melanogaster S2p cells

characteristic: External Id

text: Institut Pasteur

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

characteristic: cell line

text: Genomic DNA from S2 cells persistently infected with Flock House virus were subjected to deep sequencing. Libraries were performed according to Illumina's kit and protocols. Paired-end run (2x54) was performed in Illumina GA IIx.

characteristic: description

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster S2p cells genomic DNA

characteristic: title


text: J. Craig Venter Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

text: not determined

characteristic: collection date

text: Illumina Paired-Ends

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft32.8x;26

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

text: oral

text: not determined

text: not determined

text: Veillonella sp. ACP1

text: Veillonella sp. ACP1

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

text: BEI HM-778

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Veillonella sp. ACP1


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CA v6.1

text: terrestrial biome [ENVO:00000446]

text: Generic

characteristic: biosamplemodel

text: not determined

text: Illumina Paired-Ends

characteristic: description

text: Level 2: High-Quality Draft33x;44

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Mogibacterium sp. CM50

characteristic: organism

text: Mogibacterium sp. CM50

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

characteristic: sequencing method

characteristic: sop

text: BEI HM-769

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Mogibacterium sp. CM50

characteristic: title


text: J. Craig Venter Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

text: not determined

characteristic: collection date

text: Illumina Paired-Ends

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft33x;75

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

text: oral

text: not determined

text: not determined

text: Capnocytophaga sp. CM59

text: Capnocytophaga sp. CM59

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

text: BEI HM-763

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Capnocytophaga sp. CM59


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: CA v6.1

text: terrestrial biome [ENVO:00000446]

text: Generic

characteristic: biosamplemodel

text: not determined

text: Illumina Paired-Ends

characteristic: description

text: Level 2: High-Quality Draft32x;56

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Selenomonas sp. CM52

characteristic: organism

text: Selenomonas sp. CM52

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

characteristic: sequencing method

characteristic: sop

text: BEI HM-772

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Selenomonas sp. CM52


text: J. Craig Venter Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler 2.6

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: Generic

text: not determined

characteristic: collection date

text: Illumina Paired-Ends

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft35x;32

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

text: oral

text: not determined

text: not determined

text: Slackia sp. CM382

text: Slackia sp. CM382

text: Reference Genome

text: not determined

text: Illumina HiSeq 2000

text: BEI HM-775

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Slackia sp. CM382

characteristic: title


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Illumina Paired-Ends

characteristic: description

text: Prevotella bivia B11

characteristic: organism

text: Generic sample from Prevotella bivia B11


text: J. Craig Venter Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Illumina Paired-Ends

text: Haemophilus sp. T13

characteristic: strain

text: Generic sample from Haemophilus sp. T13


text: J. Craig Venter Institute

text: live

text: Generic

text: Illumina Paired-Ends

text: Enterococcus faecalis E12

text: Generic sample from Enterococcus faecalis E12


text: J. Craig Venter Institute

text: live

text: Generic

text: Illumina Paired-Ends

text: Enterococcus faecalis B12

text: Generic sample from Enterococcus faecalis B12


text: United States Department of Agriculture

text: live

text: Generic

text: Glycine max

text: Reads not mapping to G. max 10dai.


text: United States Department of Agriculture

text: live

text: Generic

text: Glycine max

text: Reads not mapping to G. max 0dai.


text: Northwestern University

text: live

text: Generic

text: wild type

characteristic: genotype/variation

text: Vesicular Stomatitis virus

characteristic: infection

text: Drosophila melanogaster

text: adult flies

text: VSV-infected wiltype flies


text: Northwestern University

text: live

text: Generic

text: Dcr-2 mutants

text: Vesicular Stomatitis virus

text: Drosophila melanogaster

text: adult flies

text: VSV-infected Dcr-2 mutant flies


text: Northwestern University

text: live

text: Generic

text: R2D2 mutants

text: Vesicular Stomatitis virus

text: Drosophila melanogaster

text: adult flies

text: VSV-infected R2D2 mutant flies


text: Northwestern University

text: live

text: Generic

text: loqs mutants

text: Vesicular Stomatitis virus

text: Drosophila melanogaster

text: adult flies

text: VSV-infected loqs mutant flies


text: Northwestern University

text: live

text: Generic

text: wild type

text: Sindbis virus

text: Drosophila melanogaster

text: adult flies

text: SINV-infected wiltype flies


text: Northwestern University

text: live

text: Generic

text: R2D2 mutants

text: Sindbis virus

text: Drosophila melanogaster

text: adult flies

text: SINV-infected R2D2 mutant flies


text: Northwestern University

text: live

text: Generic

text: loqs mutants

text: Sindbis virus

text: Drosophila melanogaster

text: adult flies

text: SINV-infected loqs mutant flies


text: J. Craig Venter Institute

text: live

text: Generic

text: Illumina Paired-Ends

text: Staphylococcus sp. E16

text: Generic sample from Staphylococcus sp. E16


text: Weatherall Institute of Molecular Medicine, University of Oxford

text: live

text: Generic

text: Illumina

characteristic: adapters

characteristic: length

text: Random oligo, 21 nucleotides

characteristic: molecule

text: synthetic construct

text: Random oligo, 21 nucleotides


characteristic: External Id

text: live

text: Generic

text: Illumina

text: Random oligo, 9 nucleotides

text: synthetic construct

text: Random oligo, 9 nucleotides

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: HD

text: Random oligo, 21 nucleotides

text: synthetic construct

text: Random oligo, 21 nucleotides


characteristic: INSDC last update

text: live

text: Generic

text: HD

text: Random oligo, 9 nucleotides

text: synthetic construct

text: Random oligo, 9 nucleotides


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Rhinovirus A

characteristic: organism

text: Rhinovirus p1292_s6470_2000


characteristic: INSDC secondary accession

text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1294_s6535_2000


name: Treponema sp. JC$ whole genome shotgun sequence

text: CSIRO

text: live

characteristic: INSDC status

text: Generic

text: Treponema

text: Draft genome sequence of Treponema sp. JC4, a novel spirochaete isolated from the bovine rumen


name: Treponema sp. JC4 whole genome shotgun sequence

text: CSIRO

text: live

text: Generic

characteristic: NCBI submission model

text: Treponema sp. JC4


Raw sequencing data - metagenome

text: School of Biological Sciences, Chung-Ang university

text: live

text: Generic

characteristic: NCBI submission package

text: metagenome

text: Raw sequencing data for microbial community analysis of ocular


text: Delft University of Technology

text: live

text: Generic

characteristic: SRA accession

text: Laboratory evolved yeast strain.

characteristic: description

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae IMW004


text: Delft University of Technology

text: live

text: Generic

text: Laboratory evolved yeast strain.

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae IMW005


text: Peking University

text: live

text: Generic

text: human preimplantation blastomere (Oocyte)

characteristic: cell type

text: early blastomere

characteristic: development stage

text: Homo sapiens

text: cDNAs of individual cells of preimplantation embryos

text: human preimplantation embryos

characteristic: tissue

text: Oocyte #1


text: Peking University

text: live

text: Generic

text: early blastomere

characteristic: developmental stage

text: Homo sapiens

text: human preimplantation embryos

text: Oocyte #2


text: Peking University

text: live

text: Generic

text: early blastomere

text: Homo sapiens

text: human preimplantation embryos

text: Oocyte #3


text: Peking University

text: live

text: Generic

text: human preimplantation blastomere (zygote)

text: early blastomere

text: Homo sapiens

text: human preimplantation embryos

text: Zygote #1


text: Peking University

text: live

text: Generic

text: early blastomere

text: Homo sapiens

text: human preimplantation embryos

text: Zygote #2


text: Peking University

text: live

text: Generic

text: early blastomere

text: Homo sapiens

text: human preimplantation embryos

text: Zygote #3


text: Peking University

text: live

text: Generic

text: human preimplantation blastomere (2-cell)

text: early blastomere

text: Homo sapiens

text: human preimplantation embryos

text: 2-cell embryo#1 -Cell#1


text: Peking University

text: live

text: Generic

text: early blastomere

text: Homo sapiens

text: human preimplantation embryos

text: 2-cell embryo#1 -Cell#2


text: Peking University

text: live

text: Generic

text: early blastomere

text: Homo sapiens

text: human preimplantation embryos

text: 2-cell embryo#2 -Cell#1


text: Peking University

text: live

text: Generic

text: early blastomere

text: Homo sapiens

text: human preimplantation embryos

text: 2-cell embryo#2 -Cell#2


text: Peking University

text: live

text: Generic

text: early blastomere

text: Homo sapiens

text: human preimplantation embryos

text: 2-cell embryo#3 -Cell#1


text: Peking University

text: live

text: Generic

text: early blastomere

text: Homo sapiens

text: human preimplantation embryos

text: 2-cell embryo#3 -Cell#2


text: Peking University

text: live

text: Generic

text: human embryonic stem cell

text: peri-implantation stem cells

text: Homo sapiens

text: cDNAs of individual cell of human embryonic stem cells

text: human embryonic stem cell line

text: hESC passage#0 -Cell#1


text: Peking University

text: live

text: Generic

text: human embryonic stem cell

text: peri-implantation stem cells

text: Homo sapiens

text: human embryonic stem cell line

text: hESC passage#0 -Cell#2


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1038_s6391_2000


text: live

text: Generic

text: Rhinovirus B

text: Rhinovirus p1104_s2980_2000


text: The Rockefeller University

text: live

text: Generic

text: Arabidopsis thaliana

text: Control leaf

text: leaf

text: Control leaf


text: The Rockefeller University

text: live

text: Generic

text: Arabidopsis thaliana

text: Control root

text: root

text: Control root


text: The Rockefeller University

text: live

text: Generic

text: Arabidopsis thaliana

text: Osmotic leaf

text: leaf

text: Osmotic leaf


text: The Rockefeller University

text: live

text: Generic

text: Arabidopsis thaliana

text: Osmotic root

text: root

text: Osmotic root


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: Bethyl A300-158A

characteristic: antibody catalog number

text: V6.5 embryonic stem cells

characteristic: chip antibody

text: Mus musculus

text: Chromatin IP against SA2


characteristic: External Id

text: live

text: Generic

text: Bethyl A300-157A

text: V6.5 embryonic stem cells

text: Mus musculus

text: Chromatin IP against SA1

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Moshe Oren MOSHE OREN LABORATOR

text: V6.5 embryonic stem cells

text: Mus musculus

text: Chromatin IP against H2Bub


characteristic: INSDC last update

text: live

text: Generic

text: Upstate 06-599

text: V6.5 embryonic stem cells

text: Mus musculus

characteristic: organism

text: Chromatin IP against H3K9,K14Ac


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Abcam AB8580

text: V6.5 embryonic stem cells

text: Mus musculus

text: Chromatin IP against H3K4me3


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Abcam AB8550

text: V6.5 embryonic stem cells

text: Mus musculus

text: Chromatin IP against H3K4me3


text: live

text: Generic

characteristic: SRA accession

text: Lab Generated (Crabtree) J1

text: V6.5 embryonic stem cells

text: Mus musculus

text: Chromatin IP against Brg1


text: INRA

text: live

text: Generic

text: cow Soka with starch plus oil diet at period 2

characteristic: description

text: bovine gut metagenome

text: bovine gut metagenome(rumen)


text: Biodata mining lab., Department of Bioinformatics & Life science, Soongsil univ.

text: live

text: Generic

text: CD4+ naive T cell

characteristic: cell type

text: Atopic dermatitis (AD)

characteristic: disease state

text: Homo sapiens

text: CD4+ naive T cell

text: CD4+ naive T cell MIRA-Seq in patients with Atopic dermatitis (AD)


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1293_s3944_2000


text: live

text: Generic

text: Rhinovirus B

text: Rhinovirus p1277_s6500_2000


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1295_s3993_2000


text: College of Life Science, Wuhan University

text: live

text: Generic

text: MEF

characteristic: cell line

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: Mll1+/+ MEF cell


text: live

text: Generic

text: TNFa (10ng/ml)

characteristic: agent

text: MEF

text: wild type

text: Mus musculus

text: Mll1+/+ MEF cell with TNFa treatment

text: Mll1+/+ TNF


characteristic: External Id

text: live

text: Generic

text: MEF

text: Mus musculus

text: Mll1-/- MEF cell

text: Mll1 -/-


text: live

text: Generic

text: TNFa (10ng/ml)

text: MEF

text: Mus musculus

text: Mll1-/- MEF cell with TNFa treatment

text: Mll1 -/- TNF

characteristic: title


text: Zaret lab, Cell and Developmental Biology, University of Pennsylvania School of Medicine

characteristic: INSDC center name

text: live

text: Generic

text: BJ

text: foreskin fibroblast cell

characteristic: chip antibody

text: abcam

characteristic: chip antibody vendor

text: infected with lentiviruses encoding for dox-inducible Oct4, Sox2, Klf4, and c-Myc, along with lentiviruses expressing rtTA2M2

text: Homo sapiens

text: BJ_Oct4 ChIP-Seq_48hr_postinduction

text: 48hrs post-induction with with 1µg/ml dox

characteristic: time point

text: Oct4 ChIP-Seq at 48hrs Post-Induction


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: BJ

text: foreskin fibroblast cell

text: R&D

text: Homo sapiens

characteristic: organism

text: BJ_Sox2 ChIP-Seq_48hr_postinduction

text: Sox2 ChIP-Seq at 48hrs Post-Induction


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: BJ

text: foreskin fibroblast cell

text: R&D

text: Homo sapiens

text: BJ_Klf4 ChIP-Seq_48hr_postinduction

text: Klf4 ChIP-Seq at 48hrs Post-Induction


text: live

text: Generic

text: BJ

characteristic: cell line

text: foreskin fibroblast cell

characteristic: cell type

text: c-Myc

text: R&D

text: Homo sapiens

text: BJ_c-Myc ChIP-Seq_48hr_postinduction

text: c-Myc ChIP-Seq at 48hrs Post-Induction


text: live

text: Generic

text: BJ

text: foreskin fibroblast cell

characteristic: genotype/variation

text: Homo sapiens

text: BJ_DNA Input_control_48hr_postinduction

text: DNA Input ChIP-Seq at 48hrs Post-Induction


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: human gut metagenome

characteristic: sample name

text: Generic sample from unclassified sequences


text: Iowa State University

characteristic: INSDC center name

text: live

text: Generic

text: Zea mays perennis (PI #: Ames 21869; Schnable Lab Ac3289; Row #: 10B-564-1)

characteristic: description

text: Zea mays

characteristic: title


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC first public

text: live

text: Generic

text: Escherichia coli 174900

characteristic: strain

text: Escherichia coli 174900


text: Iowa State University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Zea mays diploperennis (PI #: PI 441932; Schnable Lab Ac3864; Row #: 10B-568-2)

text: Zea mays


text: Iowa State University

text: live

characteristic: INSDC status

text: Generic

text: Zea mays parviglumis (PI #: Ames 28399 [Doebley TIL#: 1]; Schnable Lab Ac3679; Row #: 11B-240)

text: Zea mays

characteristic: organism


text: Iowa State University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Zea mays parviglumis (PI #: Ames 28400 [Doebley TIL#: 3]; Schnable lab Ac3680; Row #: 11B-241)

text: Zea mays


text: live

text: Generic

characteristic: SRA accession

text: Santa Cruz SC-2027

characteristic: antibody catalog number

text: BGO3 (feeder free)

characteristic: cell line

text: embryonic stem cells

text: IgG

characteristic: chip antibody

text: Homo sapiens

text: ChipSeq for IgG


characteristic: External Id

text: live

text: Generic

text: Covance MMS-126R

text: BGO3 (feeder free)

text: embryonic stem cells

characteristic: cell type

text: RNA Pol II (8WG16)

text: Homo sapiens

text: ChipSeq for Pol2


characteristic: INSDC center name

text: live

text: Generic

text: Abcam AB28379

text: BGO3 (feeder free)

text: embryonic stem cells

text: Homo sapiens

text: Endodermal Diff of BG03 cells, Activin A, t=48h Smad3


text: live

text: Generic

text: Abcam AB28379

text: BGO3 (feeder free)

text: embryonic stem cells

text: Homo sapiens

text: Endodermal Diff of BG03 cells, Activin A t=2h, Smad3


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: Abcam AB28379

text: BGO3 (feeder free)

text: embryonic stem cells

text: Homo sapiens

text: Endodermal Diff of BG03 cells, Activin A t=0, Smad3


text: live

text: Generic

text: Abcam AB9263

text: BGO3 (feeder free)

text: embryonic stem cells

text: Homo sapiens

text: Smc3 ChipSeq in human ES cells


text: live

text: Generic

text: Bethyl A300-055A

text: BGO3 (feeder free)

text: embryonic stem cells

text: Homo sapiens

text: Smc1 ChipSeq in human ES cells


text: live

text: Generic

text: None WCE

text: Melanoma

text: Homo sapiens

text: WM853.2 WCE

text: Seq for WM853.2 melanoma cells WCE


text: live

text: Generic

text: None WCE

text: Melanoma

text: Homo sapiens

text: Wm451-lu WCE

text: Seq for Wm451-lu WCE


text: live

text: Generic

text: Santa Cruz SC-66884

text: Melanoma

text: Homo sapiens

text: Chromatin IP against SetDB1

text: ChIP-Seq for SetDB1 in WM853.2 melanoma cells


text: live

text: Generic

text: None WCE

text: Melanoma

text: Homo sapiens

text: WM262 WCE

text: Seq for WM262 melanoma cells WCE


text: Iowa State University

text: live

text: Generic

text: Zea mays parviglumis (PI #: Ames 28403 [Doebley TIL#: 9]; Schnable Lab Ac3683; Row #: 11B-242)

characteristic: description

text: Zea mays


text: Iowa State University

text: live

text: Generic

text: Zea mays parviglumis (PI #: Ames 28405 [Doebley TIL#: 11]; Schnable Lab Ac3685; Row #: 11B-243)

text: Zea mays

characteristic: title


text: Iowa State University

characteristic: INSDC first public

text: live

text: Generic

text: Zea mays parviglumis (PI #: Ames 28407 [Doebley TIL#: 15]; Schnable Lab Ac3686; Row #: 11B-244)

text: Zea mays


text: Iowa State University

text: live

text: Generic

text: Zea mays mexicana (PI #: Ames 28398 [Doebley TIL#: 25]; Schnable Lab Ac3687-21; Row #: 11B-245)

text: Zea mays


text: Iowa State University

text: live

text: Generic

text: Zea mays Fv2 RNA-Seq (Schnable Lab Ac4585; Row #: 11B-5852-1~10)

text: Zea mays


Miami White

text: Iowa State University

text: live

text: Generic

text: Zea mays Miami White RNA-Seq (Schnable Lab Ac5684; Row #: 11B-884-1)

text: Zea mays


text: NCI

text: live

text: Generic

text: Immortalized breast cancer cells

text: CtBP

text: Homo sapiens

characteristic: passages

text: MCF-7 cells

text: Santa Cruz

characteristic: vendor


text: NCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Immortalized breast cancer cells

text: Homo sapiens

text: MCF-7 cells

text: MCF-7 input DNA


Small RNAs in Hydra magnipapillata

text: inStem

text: live

characteristic: INSDC status

text: Generic

text: Hydra vulgaris

characteristic: organism

text: Deep Sequencing Reveals Unique Small RNA Repertoire that are regulated during head regeneration in the Cnidarian Hydra magnipapillata


text: University of Aveiro

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: port of Aveiro

characteristic: area

text: Generic

characteristic: biosamplemodel

text: Portugal

characteristic: country

text: 11 Augusto 2010

characteristic: date

text: Port North Terminal Multiuse

characteristic: environment

text: N 40 degrees 38' 7.41

characteristic: latitude

text: W 8 degrees 43' 5.49

characteristic: longitude

text: marine metagenome

text: marine metagenome


characteristic: External Id

text: Institute of Animal Genetics and Breeding, College of Animal Science and Technology, Sichuan Agricultural University

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: female

characteristic: gender

text: 0 day

characteristic: infant age

text: Sus scrofa

text: Breast milk exosomes 0d-rep1

text: Breast milk exosomes 0d-rep1

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: female

text: 0 day

text: Sus scrofa

text: Breast milk exosomes 0d-rep2

text: Breast milk exosomes 0d-rep2


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: female

text: 0 day

text: Sus scrofa

characteristic: organism

text: Breast milk exosomes 0d-rep3

text: Breast milk exosomes 0d-rep3


text: live

text: Generic

text: female

text: 3 days

text: Sus scrofa

text: Breast milk exosomes 3d

text: Breast milk exosomes 3d


text: live

text: Generic

text: female

text: 7 days

text: Sus scrofa

text: Breast milk exosomes 7d

text: Breast milk exosomes 7d


text: live

text: Generic

text: female

text: 14 days

text: Sus scrofa

text: Breast milk exosomes 14d

text: Breast milk exosomes 14d


text: live

text: Generic

text: female

text: 21 days

text: Sus scrofa

text: Breast milk exosomes 21d

text: Breast milk exosomes 21d


text: live

text: Generic

text: female

text: 28 days

text: Sus scrofa

text: Breast milk exosomes 28d

text: Breast milk exosomes 28d


text: University of Aveiro

text: live

text: Generic

text: port of Aveiro

characteristic: area

text: Generic

characteristic: biosamplemodel

text: Portugal

characteristic: country

text: 11 Augusto 2010

characteristic: date

text: Port Liquid Bulk Terminal

text: N 40 degrees 39' 1.64

text: W 8 degrees 43' 3.58

text: marine metagenome

text: marine metagenome


characteristic: External Id

text: University of Aveiro

text: live

text: Generic

text: port of Aveiro

text: Generic

text: Portugal

text: 11 Augusto 2010

text: S. Jacinto Bay

characteristic: environment

text: N 40 degrees 39' 4.99

characteristic: latitude

text: W 8 degrees 43' 9.06

characteristic: longitude

text: marine metagenome

text: marine metagenome


text: University of Aveiro

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: port of Aveiro

text: Generic

text: Portugal

text: 11 Augusto 2010

text: Port Liquid Bulk Terminal (Berthage)

text: N 40 degrees 39' 4.99

text: W 8 degrees 42' 4.84

text: marine metagenome

text: marine metagenome


text: University of Aveiro

characteristic: INSDC first public

text: live

text: Generic

text: port of Aveiro

text: Generic

text: Portugal

text: 11 Augusto 2010

text: Port Fish Unloading Terminal

text: N 40 degrees 38' 8.51

text: W 8 degrees 41' 8.63

text: marine metagenome

text: marine metagenome

characteristic: title


Colacanth

text: University of Tokyo

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: A juvenile coelacanth individual, TCC041-1, captured off Tanga region, Tanzania in 2007.

characteristic: description

text: Latimeria chalumnae

text: Tanzanian coelacanth DNA


Chelonia mydas WGS

text: Beijing Genome Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Chelonia mydas

text: Chelonia mydas whole genome sequence


Bolocera tuediae transcriptome

text: University of Tromsoe

text: live

text: Generic

text: An adult specimen of the cold-water sea anemone, Bolocera tuediae, was collected outside the island Ringvassoya in Troms, Norway. Total RNA was extracted from fresh body wall and tentacle tissue.

text: Bolocera tuediae

characteristic: organism

text: Bolocera tuediae transcriptome


Hormathia digitata transcriptome

text: University of Tromsoe

text: live

text: Generic

text: A specimen of the cold-water sea anemone, Hormathia digitata, was collected outside the island Ringvassoya in Troms, Norway. Total RNA was extracted from fresh body wall and tentacle tissue.

text: Hormathia digitata

text: Hormathia digitata transcriptome


text: Pennsylvania State University

text: live

text: Generic

text: GATA1 (Santacruz,clone N6, sc-265)

characteristic: chip antibody

text: Rescued subline of G1E expressesing a Gata1-estrogen receptor (ER) transgene; recapitulates erythroid differentiation after induction by estradiol treatment for 24hr.

characteristic: developmental stage

text: Mus musculus

text: mitotic G1E-ER4+E2 cells

characteristic: strain


characteristic: External Id

text: Pennsylvania State University

text: live

text: Generic

text: Mus musculus

text: mitotic G1E-ER4+E2 cells


text: Pennsylvania State University

text: live

text: Generic

text: GATA1 (Santacruz,clone N6, sc-265)

text: Mus musculus

text: asynchrnous G1E-ER4+E2 cells


text: Pennsylvania State University

text: live

text: Generic

text: Mus musculus

text: asynchrnous G1E-ER4+E2 cells


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Escherichia coli 178200

text: Escherichia coli 178200


text: NANKAI University

text: live

text: Generic

characteristic: cell line

text: lung adenocarcinoma cell line

characteristic: cell type

characteristic: knockdown

text: Homo sapiens

text: A549 cell line

text: A549 shRNA SOX2


text: NANKAI University

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: lung adenocarcinoma cell line

text: Homo sapiens

text: A549 cell line

text: A549 shRNA Con


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

characteristic: labexpid

text: iIDR

characteristic: labversion

text: cytosol

characteristic: localization

text: The fluid between the cells outer membrane and the nucleus

characteristic: localization description

text: Homo sapiens

text: TAP-Only

characteristic: protocol

text: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.

characteristic: protocol description

characteristic: readtype

text: Single 36 nt reads

characteristic: readtype description

characteristic: replicate

text: shortTotal

characteristic: rnaextract

text: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation

characteristic: rnaextract description

text: CSHL_RnaSeq_HeLa-S3_cytosol_TAP-Only_shortTotal

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

text: cell

text: Whole cell

text: Homo sapiens

characteristic: organism

text: TAP-Only

text: Single 36 nt reads

text: shortTotal

text: CSHL_RnaSeq_SK-N-SH_RA_cell_TAP-Only_shortTotal


text: ENCODE DCC

text: live

text: Generic

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: biorep

text: M

characteristic: cell sex

text: RnaSeq

characteristic: datatype

text: Sequencing analysis of RNA expression

characteristic: datatype description

characteristic: labexpid

text: iIDR

characteristic: labversion

text: nucleus

characteristic: localization

text: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA

characteristic: localization description

text: Homo sapiens

text: TAP-Only

characteristic: protocol

characteristic: protocol description

text: Single 36 nt reads

text: shortTotal

text: CSHL_RnaSeq_H1-hESC_nucleus_TAP-Only_shortTotal


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: WiCell Research Institute

text: M

text: RnaSeq

text: Sequencing analysis of RNA expression

text: iIDR

text: cytosol

text: Homo sapiens

text: TAP-Only

characteristic: readtype

text: Single 36 nt reads

characteristic: readtype description

characteristic: replicate

text: shortTotal

characteristic: rnaextract

characteristic: rnaextract description

text: CSHL_RnaSeq_H1-hESC_cytosol_TAP-Only_shortTotal

characteristic: title