text: ENCODE DCC

text: live

text: Generic

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Mitch Weiss lab

characteristic: biomaterial provider

characteristic: cell

text: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: PSU-m

characteristic: lab

text: Hardison - Penn State University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: Strain 129, has widely available embryonic stem cells

characteristic: strain description

characteristic: treatment

text: 24 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)

characteristic: treatment description


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

text: Embryonic day 0 (stem cell)

text: Mitch Weiss lab

text: Gata1- erythroid progenitor

text: mouse

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: PSU-m

text: Hardison - Penn State University

text: Mus musculus

characteristic: organism

characteristic: strain

characteristic: title

text: No special treatment or protocol applies


text: Microbiology and Molecular Genetics, University of California, Irvine

text: live

text: Generic

text: HeLa

characteristic: cell line

characteristic: clip antibody

text: Homo sapiens

text: HeLa

text: iCLIP-Seq

characteristic: strategy

text: CstF64-iCLIP rep1


text: live

text: Generic

text: HeLa

text: Homo sapiens

text: HeLa

text: iCLIP-Seq

text: CstF64-iCLIP rep2


text: live

text: Generic

text: HeLa

text: Homo sapiens

text: HeLa

text: iCLIP-Seq

text: CstF64-iCLIP rep3


text: live

text: Generic

text: HeLa

text: control

characteristic: genotype/variation

text: Homo sapiens

text: HeLa

text: RNA-Seq

text: direct RNA sequencing (DRS) of control HeLa cells


text: live

text: Generic

text: HeLa

text: Homo sapiens

text: Stable HeLa cell line

text: RNA-Seq

text: direct RNA sequencing (DRS) of CstF64-RNAi cells


text: live

text: Generic

text: HeLa

text: Homo sapiens

text: Stable HeLa cell line transfected with siRNAs

text: RNA-Seq

text: direct RNA sequencing (DRS) of CstF64&t-RNAi cells


text: ENCODE DCC

text: live

text: Generic

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: MethylWgbs

characteristic: datatype

text: DNA Methyl Whole Genome Bisulfite Seq

characteristic: datatype description

text: HudsonAlpha

characteristic: lab

text: Myers - Hudson Alpha Institute for Biotechnology

characteristic: lab description

characteristic: labexpid

text: Homo sapiens

text: HudsonAlpha_H1-hESC_MethylWgbs (superseded by GSE80911)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: MethylWgbs

text: DNA Methyl Whole Genome Bisulfite Seq

text: HudsonAlpha

text: Homo sapiens

characteristic: organism

text: HudsonAlpha_GM12878_MethylWgbs (superseded by GSE86765)

characteristic: title


text: CGAT, Department of Physiology Anatomy & Genetics, MRC-FGU

text: live

text: Generic

characteristic: cell line

text: embryonic stem cells (ESCs)

characteristic: cell type

characteristic: chip antibody

text: Mus musculus

text: Embryonic stem cells, WT, Kdm2a ChIP


text: live

text: Generic

text: embryonic stem cells (ESCs)

text: Mus musculus

text: Embryonic stem cells, WT, Kdm2b ChIP


text: live

text: Generic

text: embryonic stem cells (ESCs)

text: Mus musculus

text: Embryonic stem cells, WT, input

text: WT-Input


text: live

text: Generic

text: embryonic stem cells (ESCs)

text: Mus musculus

text: CCTAAGGTTAAGTCGCCCTCG

characteristic: shRNA sequence

text: shScrambled

characteristic: shrna

text: Embryonic stem cells, control shRNA, Ring1b ChIP


text: live

text: Generic

text: embryonic stem cells (ESCs)

text: Mus musculus

text: CCTAAGGTTAAGTCGCCCTCG

text: shScrambled

text: Embryonic stem cells, control shRNA, Kdm2b ChIP


text: live

text: Generic

text: embryonic stem cells (ESCs)

text: Mus musculus

text: CCTAAGGTTAAGTCGCCCTCG

text: shScrambled

text: Embryonic stem cells, control shRNA, input

text: Scr-Input


text: live

text: Generic

text: embryonic stem cells (ESCs)

text: Mus musculus

text: CGCTGTGGAAATATCTGTCAT

text: Embryonic stem cells, Kdm2b shRNA, Ring1b ChIP


text: live

text: Generic

text: embryonic stem cells (ESCs)

text: Mus musculus

text: CGCTGTGGAAATATCTGTCAT

text: Embryonic stem cells, Kdm2b shRNA, Kdm2b ChIP


text: live

text: Generic

text: embryonic stem cells (ESCs)

text: Mus musculus

text: CGCTGTGGAAATATCTGTCAT

text: Embryonic stem cells, Kdm2b shRNA, input

text: KD-Input


text: EPFL

text: live

text: Generic

text: anti-RpoB

text: exponential phase

characteristic: growth phase

text: Mycobacterium tuberculosis H37Rv

text: Log phase Mtb H37Rv cells

characteristic: strain

text: type strain of Mycobacterium tuberculosis

characteristic: type material


characteristic: External Id

text: EPFL

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: anti-RpoB

text: stationary phase

text: Mycobacterium tuberculosis H37Rv

text: Stat phase Mtb H37Rv cells


text: EPFL

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: anti-NusA

text: exponential phase

text: Mycobacterium tuberculosis H37Rv

text: Log phase Mtb H37Rv cells


text: EPFL

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: anti-NusA

text: stationary phase

text: Mycobacterium tuberculosis H37Rv

text: Stat phase Mtb H37Rv cells


text: EPFL

text: live

text: Generic

text: exponential phase

text: Mycobacterium tuberculosis H37Rv

characteristic: organism

text: Log phase Mtb H37Rv cells

characteristic: title


text: EPFL

text: live

text: Generic

text: stationary phase

text: Mycobacterium tuberculosis H37Rv

text: Stat phase Mtb H37Rv cells


text: EPFL

text: live

text: Generic

text: exponential

text: Mycobacterium tuberculosis H37Rv

text: Log phase Mtb H37Rv cells


text: EPFL

text: live

text: Generic

text: stationary

text: Mycobacterium tuberculosis H37Rv

text: Stationary phase Mtb H37Rv cells


text: Microbiology, Victorian Bioinformatics Consortium

text: live

text: Generic

text: 2 hours

characteristic: growth time

text: Staphylococcus aureus

text: mRNA

characteristic: rna preparation


text: live

text: Generic

text: Ceftobiprole

characteristic: antibiotic

text: 2 hours

text: Staphylococcus aureus

text: mRNA


text: live

text: Generic

text: Linezolid

text: 2 hours

text: Staphylococcus aureus

text: mRNA


text: live

text: Generic

text: Tigecycline

text: 2 hours

text: Staphylococcus aureus

text: mRNA


text: live

text: Generic

text: Vancomycin

text: 2 hours

text: Staphylococcus aureus

text: mRNA


text: live

text: Generic

text: 6 hours

text: Staphylococcus aureus

text: mRNA


text: live

text: Generic

text: Ceftobiprole

text: 6 hours

text: Staphylococcus aureus

text: mRNA


text: live

text: Generic

text: Linezolid

text: 6 hours

text: Staphylococcus aureus

text: mRNA


text: live

text: Generic

text: Tigecycline

text: 6 hours

text: Staphylococcus aureus

text: mRNA


text: live

text: Generic

text: Vancomycin

text: 6 hours

text: Staphylococcus aureus

text: mRNA


text: live

text: Generic

text: 2 hours

text: Staphylococcus aureus

text: sRNA


text: live

text: Generic

text: Ceftobiprole

text: 2 hours

text: Staphylococcus aureus

text: sRNA


text: live

text: Generic

text: Linezolid

text: 2 hours

text: Staphylococcus aureus

text: sRNA


text: live

text: Generic

text: Tigecycline

text: 2 hours

text: Staphylococcus aureus

text: sRNA


text: live

text: Generic

text: Vancomycin

text: 2 hours

text: Staphylococcus aureus

text: sRNA


text: live

text: Generic

text: 6 hours

text: Staphylococcus aureus

text: sRNA


text: live

text: Generic

text: Ceftobiprole

text: 6 hours

text: Staphylococcus aureus

text: sRNA


text: live

text: Generic

text: Linezolid

text: 6 hours

text: Staphylococcus aureus

text: sRNA


text: live

text: Generic

text: Tigecycline

text: 6 hours

text: Staphylococcus aureus

text: sRNA


text: live

text: Generic

text: Vancomycin

text: 6 hours

text: Staphylococcus aureus

text: sRNA


text: ENCODE DCC

text: live

text: Generic

characteristic: antibody

text: Rabbit polyclonal generated using the immunogen: Zinc finger protein 384 recombinant protein epitope signature tag (PrEST)

characteristic: antibody antibodydescription

text: This gene encodes a C2H2-type zinc finger protein, which may function as a transcription factor. This gene also contains long CAG trinucleotide repeats that encode consecutive glutamine residues. The protein appears to bind and regulate the promoters of the extracellular matrix genes MMP1, MMP3, MMP7 and COL1A1. Studies in mouse suggest that nuclear matrix transcription factors (NP/NMP4) may be part of a general mechanical pathway that couples cell construction and function during extracellular matrix remodeling. Alternative splicing results in multiple transcript variants. Recurrent rearrangements of this gene with the Ewing's sarcoma gene, EWSR1 on chromosome 22, or with the TAF15 gene on chromosome 17, or with the TCF3 (E2A) gene on chromosome 19, have been observed in acute leukemia. A related pseudogene has been identified on chromosome 7.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: SIGMA

characteristic: antibody vendorname

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

characteristic: labversion

text: Homo sapiens

text: Stanford_ChipSeq_GM12878_ZNF384_(HPA004051)_IgG-mus

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: SREBP2

characteristic: antibody antibodydescription

text: Sterol regulatory element binding transcription factor 2

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Cayman Chemical

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: CDP (C-20) is an affinity purified goat polyclonal antibody raised against a peptide mapping at the C-terminus of CDP of mouse origin.

text: CDP (for CCAAT displacement protein) was identified as a repressor for tran- scription of developmentally regulated genes. It is a homeodomain protein that appears to compete with transcriptional activating proteins for binding to the promoter regions of various genes. CDP contains three cut repeats which function as DNA binding domains. It has been demonstrated that cut repeat domains have the capacity to bind to DNA in conjunction with or independently of homeodomain DNA binding. CDP has been shown to be the DNA-binding subunit of the HiNF-D complex, which contains cyclin A, Cdc2 and an Rb-related protein in addition to CDP. Histone expression is required for the transition to S phase in the cell cycle. The HiNF-D complex regulates the transcription of Histone H4, H3 and H1 genes, allowing cells to progress from G1 to S phase.

text: Santa Cruz Biotechnology

characteristic: biomaterial provider

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

characteristic: labversion

text: Homo sapiens

text: Stanford_ChipSeq_GM12878_CDP_(sc-6327)_IgG-mus

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ERRA

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Ets-1 of human origin. Antibody Target: ERRA

characteristic: antibody antibodydescription

text: epitope corresponding to amino acids 81-160 mapping near the N-terminus of ERRalpha of human origin

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Goat polyclonal, epitope mapping near the C-terminus of CTCF of human origin. Antibody Target: CTCF

text: Transcriptional regulator with 11 highly conserved zinc finger domains. Depending on context, can bind a histone acetyltransferase (HAT)-containing complex and function as transcriptional activator or bind a histone deacetylase (HDAC)-containing complex and function as transcriptional repressor. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation. Can dimerize, mediating long-range chromatin looping. When bound to chromatin, provides an anchor point for nucleosomes positioning. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: Stanford_ChipSeq_A549_CTCF_(SC-15914)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

characteristic: antibody antibodydescription

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

text: live

text: Generic

text: Rat monoclonal raised against bacterially expressed murine GATA-1. Antibody Target: GATA1

text: GATA1 is erythroid-specific and is responsible for the regulated transcription of erythroid genes.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: Stanford_ChipSeq_K562_GATA1_(SC-266)_IgG-mus

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Jun

characteristic: antibody

text: Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun

characteristic: antibody antibodydescription

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal antibody. The immunogen recognized by this antibody maps to a region between residue 250 and 300 of human zinc finger CCCH-type containing 11A.

text: ZC3H11A is a C3H1-type zinc finger protein. ZC3H11A has been identified as a protein that is phosphorylated upon DNA damage by ATM or ATR. The function of ZC3H11A remains uncharacterized.

text: NovusBio

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_K562_ZC3H11A_(NB100-74650)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit Polyclonal against synthetic peptide conjugated to KLH derived from within residues 200 - 300 of Human Zinc finger MIZ domain-containing protein 1.

characteristic: antibody antibodydescription

text: Zinc finger MIZ domain-containing protein 1 that increases ligand-dependent transcriptional activity of AR and promotes AR sumoylation. The stimulation of AR activity is dependent upon sumoylation.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

text: Stanford_ChipSeq_K562_ZNF-MIZD-CP1_(ab65767)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal, epitope corresponding to amino acids 246-310 mapping within an internal region of CoREST of human origin recommended for detection of CoREST of mouse, rat and human origin. Antibody Target: COREST (sc30189)

text: Essential component of the BHC complex, a corepressor complex that represses transcription of neuron-specific genes in non-neuronal cells. In the BHC complex, it serves as a molecular beacon for the recruitment of molecular machinery, including MeCP2 and SUV39H1, that imposes silencing across a chromosomal interval. Plays a central role in demethylation of Lys-4 of histone H3 by promoting demethylase activity of KDM1A on core histones and nucleosomal substrates.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_IMR90_COREST_(sc-30189)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, immunogen is synthetic peptide, corresponding to a region within amino acids 427-477 of Human MAZ, GenBank BAA33064.1. Antibody Target: MAZ

characteristic: antibody antibodydescription

text: May function as a transcription factor with dual roles in transcription initiation and termination. Binds to two sites, ME1a1 and ME1a2, within the MYC promoter having greater affinity for the former. Also binds to multiple G/C-rich sites within the promoter of the Sp1 family of transcription factors.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

text: normal

text: endoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

text: Stanford_ChipSeq_IMR90_MAZ_(ab85725)_IgG-rab

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1

text: Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX

text: R&D Systems

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: Stanford_ChipSeq_IMR90_Mxi1_(AF4185)_IgG-rab

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal against RFX5 peptide corresponding to a region at amino acids 320 to 494 of the human protein conjugated to Keyhole Limpet Hemocyanin. Antibody Target: RFX5

characteristic: antibody antibodydescription

text: Activates transcription from class II MHC promoters. Recognizes X-boxes. Mediates cooperative binding betweenRFX and NF-Y. RFX binds the X1 box of MHC-II promoters

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Rockland Immunochemicals

characteristic: antibody vendorname

text: ATCC

text: normal

text: endoderm

text: human

text: F

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_IMR90_RFX5_(200-401-194)_IgG-rab


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal. Raised against synthetic peptide: TTNPKPNKALKVKKEA conjugated to KLH by a C-terminal Cysteine residue linker, corresponding to amino acids 2-17 of Human MAFK. Antibody Target: MafK

text: NFE2 DNA-binding activity consists of a heterodimer containing an 18-kD Maf protein (MafF, MafG, or MafK) and p45. Both subunits are members of the activator protein-1 superfamily of basic leucine zipper (bZIP)proteins. Since they lack a putative transactivation domain, small Mafs behave as transcriptional repressors when they dimerize among themselves. They serve as transcriptional activators by dimerizing with other (usually larger) bZip proteins and recruiting them to specific DNA-binding sites.

text: Abcam

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: Stanford_ChipSeq_GM12878_MafK_(ab50322)_IgG-mus

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: SREBP1

characteristic: antibody antibodydescription

text: Sterol regulatory element binding transcription factor 1

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonalantibody against residue 1700 and 1750 of human host cell factor C1

text: The epitope recognized by this antibody maps to a region between residue 1700 and 1750 of human host cell factor C1 (VP16-accessory protein).

text: NovusBio

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HeLa-S3_HCFC1_(NB100-68209)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse monoclonal antibody raised against a partial recombinant ZNF274 (corresponding to amino acids 420-531 of the human ZNF274 protein). Antibody Target: ZNF274

characteristic: antibody antibodydescription

text: ZNF274 is a zinc finger protein containing five C2H2-type zinc finger domains, two Kruppel-associated box A (KRABA) domains, and a leucine-rich SCAN domain. The encoded protein has been suggested to be a transcriptional repressor and interacts with the KAP1 corepressor complex.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abnova ZNF74

characteristic: antibody vendorname

text: WiCell Research Institute

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

text: Farnham - University of Southern California

characteristic: labversion

text: Homo sapiens

text: USC_ChipSeq_H1-hESC_ZNF274_(M01)_UCDavis

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal, a synthetic peptide corresponding to residues in C-terminus of human ELK-1 was used as immunogen. The antibody does not cross-react with other ETS family members. Antibody Target: ELK1

text: Elk-1 is a transcription factor that is part of the ets oncogene superfamily. Elk-1 forms a ternary complex with the serum response factors, SRE and SRF, mediating gene activity in response to serum and growth factors. Activation by several mitogen- activated protein kinases (Erk1 and Erk2) mediates the immediate early responses of the c-fos promoter to growth factors and other stimuli.

text: Epitomics

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_K562_ELK1_(1277-1)_IgG-rab

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal generated using the immunogen: Zinc finger protein 384 recombinant protein epitope signature tag (PrEST)

characteristic: antibody antibodydescription

text: This gene encodes a C2H2-type zinc finger protein, which may function as a transcription factor. This gene also contains long CAG trinucleotide repeats that encode consecutive glutamine residues. The protein appears to bind and regulate the promoters of the extracellular matrix genes MMP1, MMP3, MMP7 and COL1A1. Studies in mouse suggest that nuclear matrix transcription factors (NP/NMP4) may be part of a general mechanical pathway that couples cell construction and function during extracellular matrix remodeling. Alternative splicing results in multiple transcript variants. Recurrent rearrangements of this gene with the Ewing's sarcoma gene, EWSR1 on chromosome 22, or with the TAF15 gene on chromosome 17, or with the TCF3 (E2A) gene on chromosome 19, have been observed in acute leukemia. A related pseudogene has been identified on chromosome 7.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: SIGMA

characteristic: antibody vendorname

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: labversion

text: Homo sapiens

text: Stanford_ChipSeq_K562_ZNF384_(HPA004051)_IgG-rab

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: CDP (C-20) is an affinity purified goat polyclonal antibody raised against a peptide mapping at the C-terminus of CDP of mouse origin.

text: CDP (for CCAAT displacement protein) was identified as a repressor for tran- scription of developmentally regulated genes. It is a homeodomain protein that appears to compete with transcriptional activating proteins for binding to the promoter regions of various genes. CDP contains three cut repeats which function as DNA binding domains. It has been demonstrated that cut repeat domains have the capacity to bind to DNA in conjunction with or independently of homeodomain DNA binding. CDP has been shown to be the DNA-binding subunit of the HiNF-D complex, which contains cyclin A, Cdc2 and an Rb-related protein in addition to CDP. Histone expression is required for the transition to S phase in the cell cycle. The HiNF-D complex regulates the transcription of Histone H4, H3 and H1 genes, allowing cells to progress from G1 to S phase.

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_K562_CDP_(sc-6327)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, The epitope recognized by this antibody maps to a region between residue 1660 and 1710 of human chromodomain helicase DNA binding protein 1 using the numbering given in entry NP_001261.2 (GeneID 1105). Antibody Target: CHD1

characteristic: antibody antibodydescription

text: ATP-dependent chromatin-remodeling factor which functions as substrate recognition component of the transcription regulatory histone acetylation (HAT) complex SAGA. Regulates polymerase II transcription. Also required for efficient transcription by RNA polymerase I, and more specifically the polymerase I transcription termination step. Also required to maintain a specific chromatin configuration across the genome. Is also associated with histone deacetylase (HDAC) activity (By similarity). Required for the bridging of SNF2, the FACT complex, the PAF complex as well as the U2 snRNP complex to H3K4me3. Required for maintaining open chromatin and pluripotency in embryonic stem cells

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Novus Biologicals

characteristic: antibody vendorname

text: ATCC

text: fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis

text: normal

text: endoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

text: Stanford_ChipSeq_IMR90_CHD1_(NB100-60411)_IgG-rab

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: SK-N-SH

characteristic: cell

text: neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: SK-N-SH


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonalantibody against residue 1700 and 1750 of human host cell factor C1

characteristic: antibody antibodydescription

text: The epitope recognized by this antibody maps to a region between residue 1700 and 1750 of human host cell factor C1 (VP16-accessory protein).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: NovusBio

characteristic: antibody vendorname

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: labversion

text: Homo sapiens

text: Stanford_ChipSeq_K562_HCFC1_(NB100-68209)_IgG-rab

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal IgG, epitope mapping at the N-terminus of p300 of human origin. Antibody Target: P300

text: Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: SK-N-SH

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: SK-N-SH

text: Stanford_ChipSeq_SK-N-SH_p300_(SC-584)_IgG-rab


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal raised against synthetic peptide representing a portion within the last 100 amino acids of the human Structural Maintenance of Chromosomes-3 conjugated to KLH. Antibody Target: SMC3

characteristic: antibody antibodydescription

text: Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

text: SK-N-SH

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

text: SK-N-SH

text: Stanford_ChipSeq_SK-N-SH_SMC3_(ab9263)_IgG-rab

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: RAD21

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: SK-N-SH

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: SK-N-SH


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal against RFX5 peptide corresponding to a region at amino acids 320 to 494 of the human protein conjugated to Keyhole Limpet Hemocyanin. Antibody Target: RFX5

characteristic: antibody antibodydescription

text: Activates transcription from class II MHC promoters. Recognizes X-boxes. Mediates cooperative binding betweenRFX and NF-Y. RFX binds the X1 box of MHC-II promoters

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Rockland Immunochemicals

characteristic: antibody vendorname

text: ATCC

text: SK-N-SH

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: SK-N-SH

text: Stanford_ChipSeq_SK-N-SH_RFX5_(200-401-194)_IgG-rab

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Mouse monoclonal, Immunogen corresponding to amino acids 201-286 of Human NRF1. Antibody Target: NRF1

text: NRF1 is the mammalian homolog to the erect wing (ewg) Drosophila protein that is required for proper development of the central nervous system and indirect flight muscles. In mammals NRF1 functions as a transcription factor that activates the expression of the EIF2S1 (EIF-alpha) gene. This protein links the transcriptional modulation of key metabolic genes to cellular growth and development, and has been implicated in the control of nuclear genes required for respiration, heme biosynthesis and mitochondrialDNA transcription and replication. NRF1 forms a homodimer and binds DNA as a dimer. NRF1 shows a nuclear localization and is expressed widely in embryonic, fetal and adult tissues. Phosphorylation of NRF1 enhances DNA binding.

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: SK-N-SH

characteristic: cell

text: neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

text: SK-N-SH

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1

characteristic: antibody antibodydescription

text: Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: R&D Systems

characteristic: antibody vendorname

text: ATCC

text: SK-N-SH

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: SK-N-SH

text: Stanford_ChipSeq_SK-N-SH_Mxi1_(AF4185)_IgG-rab


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: JunD

text: rabbit polyclonal IgG. Antibody Target: JunD

text: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: SK-N-SH

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

text: SK-N-SH

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat polyclonal, epitope mapping near the C-terminus of CTCF of human origin. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: Transcriptional regulator with 11 highly conserved zinc finger domains. Depending on context, can bind a histone acetyltransferase (HAT)-containing complex and function as transcriptional activator or bind a histone deacetylase (HDAC)-containing complex and function as transcriptional repressor. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation. Can dimerize, mediating long-range chromatin looping. When bound to chromatin, provides an anchor point for nucleosomes positioning. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

text: SK-N-SH

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: SK-N-SH

text: Stanford_ChipSeq_SK-N-SH_CTCF_(SC-15914)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: JunD

text: Santa Cruz Biotech

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: CHD1

characteristic: antibody antibodydescription

text: CHD1 is a member of the CHD (chromodomain-helicase-DNA-binding) family of proteins that interacts with nucleosomes and plays a role in chromatin remodeling to modulate transcription. The members of the CHD family of proteins possess 3 common structural and functional domains: a chromodomain (chromatin organization modifier), an SNF2-like helicase/ATPase domain, and a C-terminal DNA-binding domain. CHD1 has been shown to interact with the transcriptional corepressor NCoR and histone deacetylase 1 indicating a role in transcriptional regulation. CHD1 has also been shown to interact with the Paf1 complex and Rtf1 implicating an additional role in transcriptional elongation. Alternate names for CHD1 include chromodomain-helicase-DNA-binding protein 1, ATP-dependent helicase CHD1, and DKFZp686E2337.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Bethyl Laboratories

characteristic: antibody vendorname

text: WiCell Research Institute

text: M

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: This SAP30 antibody (pAb) was raised against recombinant full length human SAP30 protein. Antibody Target: SAP30

text: SAP30, also known asSin3A-associated protein, 30kDa, is part of the SIN3 corepressor complex, that also includes SIN3, SAP18,HDAC1,HDAC2,RbAp46andRbAp48. SAP30 is involved in the functional recruitment of the Sin3-histone deacetylase complex to a specific subset of N-CoR corepressor complexes.

text: Active Motif

text: ATCC

characteristic: biomaterial provider

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal to KDM5A / Jarid1A / RBBP2. Antibody Target: JARID1A

characteristic: antibody antibodydescription

text: Histone demethylase that specifically demethylates

text: abcam

text: Abcam

text: WiCell Research Institute

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: HDAC2

text: Histone deacetylase 2 (HDAC2) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC2 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC2 include HD2, RPD3, and YAF1.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Bethyl Laboratories

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: F

characteristic: cell sex

text: std

characteristic: control

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: goat polyclonal IgG, 200 micrograms/ml, epitope mapping at the C-terminus of HDAC1 of human origin. Antibody Target: HDAC1

text: Histone deacetylase 1 (HDAC1) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC1 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC1 include RPD3L1, HD1, GON-10, and DKFZp686H12203.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: F

text: std

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: RBBP5

characteristic: antibody antibodydescription

text: Retinoblastoma binding protein 5 (RbBP5) is a subunit of a human Set1-like histone methyltransferase (HMT) complex. The Set-1 like complexes are responsible for mono-, di-, and tri-methylation of histone H3 K4. RbBP5 associates with a multitude of proteins in a number of Set1-like complexes which include various combinations of MLL, MLL2, MLL3, MLL4, ASH2L,WDR5, hDPY-30, hSwd2, CXXC1, HCF1, Menin, PTIP, PA1, NCOA6, and UTX. RbBP5 is also one of many proteins that bind the Retinoblastoma tumor suppressor protein, pRb. Alternate names for RbBP5 are RBQ3 and SWD1.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Bethyl Laboratories

characteristic: antibody vendorname

text: ATCC

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PHF8

text: PHF8 (PHD finger protein 8) is a member of the jumonji family of proteins and contains a jumonji C (JmjC) domain. The JmjC proteins are predicted to be metalloenzymes that play a role a chromatin remodeling and histone demethylation. PHF8 also bears a PHD (plant homeodomain)- type zinc-finger, a domain also found to be involved in chromatin remodeling and transcriptional regulation. Truncating mutations in PHF8 are associated with X-linked mental retardation and cleft lip/cleft palate. PHF8 is also known as ZNF422 and KIAA1111.

text: Bethyl Laboratories

text: ATCC

characteristic: biomaterial provider

text: F

characteristic: cell sex

text: std

characteristic: control

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Rabbit polyclonal. Antibody Target: SIRT6

text: A synthetic peptide made to an internal region of the human SIRT6 protein

text: abcam

text: Abcam

text: WiCell Research Institute

text: M

text: std

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labversion

text: Illumina Genome Analyzer IIx

characteristic: labversion description

text: Homo sapiens

characteristic: organism

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: SETDB1

characteristic: antibody antibodydescription

text: SET domain, bifurcated 1, the SET domain is a highly conserved, approximately 150-amino acid motif implicated in the modulation of chromatin structure

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Proteintech Group

characteristic: antibody vendorname

text: Proteintech

text: ATCC

characteristic: biomaterial provider

text: F

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Illumina Genome Analyzer IIx

text: Homo sapiens

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: rabbit polyclonal. Antibody Target: H3K4me1

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

text: abcam

text: Abcam

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: M

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Illumina HiSeq 2000

characteristic: line

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: title

characteristic: treatment

text: 1 h with 0.02% Ethanol (Myers)


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: Illumina HiSeq 2000

characteristic: labversion description

text: Homo sapiens

characteristic: organism

text: 1 h with 0.02% Ethanol (Myers)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: rabbit polyclonal. Antibody Target: H3K27me3

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

text: Millipore

text: ATCC

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Illumina HiSeq 2000

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: Broad_ChipSeq_A549_H3K27me3_EtOH_0.02pct

characteristic: title

text: 1 h with 0.02% Ethanol (Myers)


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K36me3

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.

characteristic: antibody targetdescription

text: Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts.

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: Illumina HiSeq 2000

characteristic: line

text: Homo sapiens

text: Broad_ChipSeq_A549_H3K36me3_EtOH_0.02pct

characteristic: treatment

text: 1 h with 0.02% Ethanol (Myers)


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PLU1

text: JARID1B (Jumonji AT-rich interactive domain 1B) is a member of the JARID 1 family of proteins that catalyze the demethylation of histones on lysine. The Jarid 1 family members include JARID1A, JARID1B, JARID1C and JARID1D. The members of this family possess a Jumonji C (JmjC) and Jumonji N (JmjN) domain as well as one ARID (AT-rich interactive domain) and three PHD-type zinc fingers. As histone demethylases, JARID 1 proteins function as transcriptional repressors. JARID1B expression is largely restricted to testis and may play a critical role in tumorigenesis as it has been found to be upregulated in prostate and breast cancer. Alternative names for JARID1B include retinoblastoma-binding protein 2 homolog 1, RBP2-H1, cancer/testis antigen 31, CT31, PLU-1, PUT1, and KDM5B.

text: YangShi lab

text: WiCell Research Institute

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Illumina Genome Analyzer IIx

characteristic: labversion description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H4K20me1

characteristic: antibody antibodydescription

text: Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: Illumina HiSeq 2000

text: Homo sapiens

text: Broad_ChipSeq_A549_H4K20me1_EtOH_0.02pct

characteristic: title

text: 1 h with 0.02% Ethanol (Myers)


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: rabbit polyclonal. Antibody Target: H3K27ac

text: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

text: abcam

text: Abcam

text: Rajinder Kaul, UW

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Illumina HiSeq 2000

characteristic: labversion description

text: Homo sapiens

characteristic: organism

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me1

characteristic: antibody antibodydescription

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

text: Abcam

text: DSMZ

text: M

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: rabbit polyclonal. Antibody Target: H3K4me2

text: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.

text: abcam

characteristic: antibody vendorname

text: Abcam

text: DSMZ

characteristic: biomaterial provider

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

text: abcam

text: Abcam

text: DSMZ

text: M

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: rabbit polyclonal. Antibody Target: H3K36me3

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: DSMZ

text: immortalized cell line

characteristic: biomaterial type

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: line

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal. Antibody Target: CTCF

text: Rabbit polyclonal. Antibody Target: CTCF

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

text: Millipore

text: DSMZ

characteristic: biomaterial provider

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ

characteristic: antibody antibodydescription

text: H2A.Z is a sequence variant of Histone H2A.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Upstate (Millipore)

text: DSMZ

text: M

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K27me3

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

text: Millipore

text: Lonza

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

text: U

text: osteoblast

characteristic: cell type

text: std

text: Osteobl/Input/std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: Osteobl

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: rabbit polyclonal. Antibody Target: H4K20me1

characteristic: antibody antibodydescription

text: Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: Lonza

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: Osteobl/Input/std

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: Osteobl

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me3

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

text: ab8580; 07-473

text: Millipore

text: 1)abcam; 2)Millipore

text: DSMZ

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

text: M

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: line

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2

characteristic: antibody antibodydescription

text: H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Active Motif

characteristic: antibody vendorname

text: DSMZ

text: M

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

text: This EZH2 antibody was raised against a recombinant protein corresponding to amino acids 353-451 of human EZH2. Antibody Target: EZH2

text: EZH2 (Enhancer of Zeste homolog 2, also designated Enx1 and SETDB1) is a human homolog of the Drosophila Polycomb-group protein Enhancer of Zeste protein. It contains a SET domain that catalyzes the methylation of histone H3 at lysine 27 (Histone H3 Lys27 monomethylated, dimethylated and trimethylated). Polycomb-group proteins repress gene expression by binding to chromatin and locally altering chromatin structure. EZH2, BMI-1 and Suz12 are present in the PRC2 and PRC3 protein complexes that function as mediators of epigenetic transcriptional silencing. EZH2 associates with the embryonic ectoderm development protein, the VAV1 oncoprotein, and the X-linked nuclear protein. EZH2 may play a role in the hematopoietic and central nervous systems. Deregulation of EZH2 is linked to a variety of cancers.

text: Active Motif

text: Rajinder Kaul, UW

characteristic: biomaterial provider

text: F

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: Illumina HiSeq 2000

characteristic: labversion description

text: Homo sapiens

text: Broad_ChipSeq_CD20+_RO01794_EZH2_(39875)

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: rabbit polyclonal. Antibody Target: H3K4me2

characteristic: antibody antibodydescription

text: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: Dr. Heimfeld Lab at FHCRC

text: F

characteristic: cell sex

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Illumina HiSeq 2000

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

text: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: HDAC2

text: Histone deacetylase 2 (HDAC2) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC2 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC2 include HD2, RPD3, and YAF1.

text: Bethyl Laboratories

text: WiCell Research Institute

characteristic: biomaterial provider

text: M

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

text: Illumina Genome Analyzer IIx

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: rabbit polyclonal antigen affinity purified, unconjugated, liquid

characteristic: antibody antibodydescription

text: Rabbit polyclonal antigen affinity purified, unconjugated, liquid. Antibody Target: CHD7

text: CHD7 is a member of the CHD (chromodomain-helicase-DNA-binding) family of proteins that interacts with nucleosomes and plays a role in chromatin remodeling to modulate transcription.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Bethyl Laboratories

characteristic: antibody vendorname

text: Bethyl

text: WiCell Research Institute

text: M

text: std

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: Illumina Genome Analyzer IIx

characteristic: labversion description

text: Homo sapiens

text: Broad_ChipSeq_H1-hESC_CHD7_(A301-223A-1)

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal. Antibody Target: CTCF

text: Rabbit polyclonal. Antibody Target: CTCF

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

text: Millipore

text: Dr. Heimfeld Lab at FHCRC

characteristic: biomaterial provider

text: F

characteristic: cell sex

text: std

characteristic: control

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Illumina HiSeq 2000

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Control

text: S. Heimfeld Laboratory, FHCRC

characteristic: cell

text: Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

text: std

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

text: Illumina HiSeq 2000

text: Homo sapiens

characteristic: replicate

text: Broad_ChipSeq_Monocytes-CD14+_RO01746_Control

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ

characteristic: antibody antibodydescription

text: H2A.Z is a sequence variant of Histone H2A.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Upstate (Millipore)

text: Dr. Heimfeld Lab at FHCRC

characteristic: biomaterial provider

text: F

characteristic: cell sex

text: std

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: Illumina HiSeq 2000

characteristic: labversion description

text: Homo sapiens

characteristic: softwareversion

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Control

text: Dr. Heimfeld Lab at FHCRC

text: primary cell

characteristic: biomaterial type

characteristic: cell

text: B cells from donors RO01778 and RO01794, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

text: B cell

characteristic: cell type

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: donor id

text: Illumina HiSeq 2000

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Bethyl Laboratories

characteristic: antibody vendorname

text: Bethyl

text: ATCC

characteristic: biomaterial provider

text: F

characteristic: cell sex

text: std

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: Illumina Genome Analyzer IIx

characteristic: labversion description

text: Homo sapiens

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: JMJD2A is a member of the jumonji (jmj) domain containing gene family of histone demethylases that plays a role in chromatin regulation and influences transcriptional activation and suppression. JMJD2A is a trimethylation-specific demethylase and functions as a transcriptional repressor.

text: Bethyl Laboratories

text: Bethyl

text: WiCell Research Institute

text: M

text: std

characteristic: control

characteristic: control description

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Illumina Genome Analyzer IIx

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Broad_ChipSeq_H1-hESC_JMJD2A_(A300-861A-1)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

text: F

characteristic: cell sex

text: std

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: line

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: rabbit polyclonal. Antibody Target: H4K20me1

text: Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair.

text: abcam

text: Abcam

text: DSMZ

text: M

text: std

characteristic: control

characteristic: control description

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: Lonza

characteristic: biomaterial provider

text: U

text: std

text: HSMMtube/Input/std

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

text: HSMMtube

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: Millipore

text: Upstate (Millipore)

text: ATCC

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

characteristic: antibody

text: This EZH2 antibody was raised against a recombinant protein corresponding to amino acids 353-451 of human EZH2. Antibody Target: EZH2

characteristic: antibody antibodydescription

text: EZH2 (Enhancer of Zeste homolog 2, also designated Enx1 and SETDB1) is a human homolog of the Drosophila Polycomb-group protein Enhancer of Zeste protein. It contains a SET domain that catalyzes the methylation of histone H3 at lysine 27 (Histone H3 Lys27 monomethylated, dimethylated and trimethylated). Polycomb-group proteins repress gene expression by binding to chromatin and locally altering chromatin structure. EZH2, BMI-1 and Suz12 are present in the PRC2 and PRC3 protein complexes that function as mediators of epigenetic transcriptional silencing. EZH2 associates with the embryonic ectoderm development protein, the VAV1 oncoprotein, and the X-linked nuclear protein. EZH2 may play a role in the hematopoietic and central nervous systems. Deregulation of EZH2 is linked to a variety of cancers.

text: Active Motif

text: Refer to the protocol documents for differing sources

text: U

text: std

text: HSMM/Input/std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

text: HSMM

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: Lonza

characteristic: biomaterial provider

text: U

text: std

text: HMEC/Input/std

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

text: HMEC

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: abcam

text: Abcam

text: Lonza

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: NHDF-Ad/Input/std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: NHDF-Ad


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

characteristic: antibody antibodydescription

text: Active Motif

text: ATCC

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Upstate (Millipore)

text: Lonza

characteristic: biomaterial provider

text: M

text: std

text: NHEK/Input/std

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

text: NHEK

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: Active Motif

text: Lonza

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: NHEK/Input/std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: NHEK


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: antibody

text: Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2

characteristic: antibody antibodydescription

text: H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).

text: Active Motif

text: Lonza

text: U

text: std

text: NH-A/Input/std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

text: NH-A

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: Lonza

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

text: U

text: astrocyte

characteristic: cell type

text: std

text: NH-A/Input/std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Homo sapiens

characteristic: replicate

text: NH-A

characteristic: treatment description