characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Th2 CD4+ T cells

text: Mus musculus

text: Generic sample from Mus musculus


status: PUBLIC

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Th17 CD4+ T cells

tag: attribute

characteristic: cell type

characteristic: chip antibody

text: source: CD4+ T cells; description: ChIP-seq

characteristic: description

text: Mus musculus

characteristic: organism

text: Generic sample from Mus musculus

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

text: iTreg CD4+ T cells

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: S2 (ab5095)

text: L1 arrest

characteristic: condition

text: source: 6 hr L1 arrest; description: ChIP-seq

text: Caenorhabditis elegans

text: wild-type N2

characteristic: strain

text: 6 hr

characteristic: time

text: Generic sample from Caenorhabditis elegans


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: S2 (ab5095)

text: L1 arrest

text: source: 12hr L1 arrest; description: ChIP-seq

text: Caenorhabditis elegans

text: wild-type N2

text: 12 hr


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: 4H8 (ab5046)

text: L1 arrest

text: Caenorhabditis elegans

text: wild-type N2

text: 12 hr


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: 8WG16 (ab817)

text: L1 arrest

text: Caenorhabditis elegans

text: wild-type N2

text: 12 hr


text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: S2 (ab5095)

text: 1 hr recovery from 12 hr L1 arrest

text: source: 1 hr recovery from 12 hr L1 arrest; description: ChIP-seq

text: Caenorhabditis elegans

text: wild-type N2


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

text: 4H8 (ab5046)

text: 1 hr recovery from 12 hr L1 arrest

text: Caenorhabditis elegans

text: wild-type N2


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

text: 8WG16 (ab817)

text: 1 hr recovery from 12 hr L1 arrest

text: Caenorhabditis elegans

text: wild-type N2


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

text: Input

text: L1 arrest

text: source: 6hr L1 arrest; description: ChIP-seq

text: Caenorhabditis elegans

text: wild-type N2

text: 6 hr


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

text: Input

text: 1 hr recovery after 12 hr L1 arrest

text: source: 1 hr recovery after 12 hr L1 arrest; description: ChIP-seq

text: Caenorhabditis elegans

text: wild-type N2


DPY-27 emb replicate 1 GFP

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: anti-GFP

text: source: dpy-27 transgenic worm OP32; description: Chromatin IP against anti-GFP

text: dpy-27 transgenic

characteristic: genotype

text: embryo

characteristic: growth stage

text: Caenorhabditis elegans


DPY-27 emb replicate 1 input

text: Gene Expression Omnibus

text: live

text: Generic

text: none, input DNA

characteristic: chip antibody

text: source: dpy-27 transgenic worm OP32; description: No ChIP just input DNA from the same preparation

characteristic: description

text: dpy-27 transgenic

text: embryo

text: Caenorhabditis elegans


DPY-27 emb replicate 2 GFP

text: Gene Expression Omnibus

text: live

text: Generic

text: anti-GFP

text: dpy-27 transgenic

text: embryo

text: Caenorhabditis elegans

characteristic: organism

characteristic: title


DPY-27 emb replicate 2 input

text: Gene Expression Omnibus

text: live

text: Generic

text: none, input DNA

text: dpy-27 transgenic

text: embryo

text: Caenorhabditis elegans

characteristic: strain


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: cell line

text: source: CME_W1_Cl.8+ cell line, biological replicate 1; description: Oligo-dT selected, double stranded cDNA, Paired-end sequencing

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: source: CME_W1_Cl.8+ cell line, biological replicate 2; description: Oligo-dT selected, double stranded cDNA, Paired-end sequencing

text: Drosophila melanogaster


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: source: Kc167 cell line, biological replicate 1; description: Oligo-dT selected, double stranded cDNA, Paired-end sequencing

text: Drosophila melanogaster


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: source: Kc167 cell line, biological replicate 2; description: Oligo-dT selected, double stranded cDNA, Paired-end sequencing

text: Drosophila melanogaster


text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: source: ML-DmBG3-c2 cell line, biological replicate 1; description: Oligo-dT selected, double stranded cDNA, Paired-end sequencing

text: Drosophila melanogaster


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

text: source: ML-DmBG3-c2 cell line, biological replicate 2; description: Oligo-dT selected, double stranded cDNA, Paired-end sequencing

text: Drosophila melanogaster


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

text: source: S2-DRSC cell line, biological replicate 1; description: Oligo-dT selected, double stranded cDNA, Paired-end sequencing

text: Drosophila melanogaster


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

text: source: S2-DRSC cell line, biological replicate 2; description: Oligo-dT selected, double stranded cDNA, Paired-end sequencing

text: Drosophila melanogaster


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

text: Embyonic stem cells

characteristic: cell type

text: source: Embyonic stem cells; description: ChiP-seq

text: H9 (passage 45)

characteristic: line

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: Embyonic stem cells (V6.5)

text: source: Embyonic stem cells (V6.5); description: ChiP-seq

text: 129SvJae x C57BL/6

characteristic: genotype

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: embryonic stem cell

characteristic: chip antibody

text: source: ESC; description: ChIP-seq

characteristic: description

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: embryonic stem cell

text: Nanog

text: source: ESC; description: ChIP-seq

text: Mus musculus

characteristic: organism

text: Generic sample from Mus musculus

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: cell line

text: embryonic stem cell

text: none, whole cell extract

text: source: ESC; description: ChIP-seq

text: Mus musculus

text: Generic sample from Mus musculus


Wild type inflorescence SBS

characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: source: whole inflorescence; description: Parallel analysis of RNA ends (PARE)

text: up to stage 11/12

characteristic: development stage

characteristic: ecotype

text: wild type

text: Arabidopsis thaliana

text: inflorescence meristem and early-stage floral buds

characteristic: tissue

text: Generic sample from Arabidopsis thaliana


rdr2 inflorescence rep1 SBS

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: up to stage 11/12

text: rdr2 mutant

text: Arabidopsis thaliana


rdr2 inflorescence rep2 SBS

text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: up to stage 11/12

text: rdr2 mutant

text: Arabidopsis thaliana


dcl2,3,4 inflorescence rep1 SBS

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: up to stage 11/12

text: dcl2,3,4 mutant

characteristic: genotype

text: Arabidopsis thaliana


dcl2,3,4 inflorescence rep2 SBS

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: description

text: up to stage 11/12

text: dcl2,3,4 mutant

text: Arabidopsis thaliana


HEK Input DNA rep1

text: Gene Expression Omnibus

text: live

text: Generic

text: HEK 293T

text: none, input

characteristic: chip antibody

text: source: Input DNA; description: ChIP-seq

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


HEK Input DNA rep2

text: Gene Expression Omnibus

text: live

text: Generic

text: HEK 293T

characteristic: cell line

text: none, input

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


HEK Input DNA rep3

characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: HEK 293T

text: none, input

text: Homo sapiens

text: Generic sample from Homo sapiens


HEK ChIP DNA rep1

text: Gene Expression Omnibus

text: live

text: Generic

text: HEK 293T

text: RNA pol II (ab5408)

text: source: Polymerase II ChIP DNA; description: ChIP-seq

text: Homo sapiens

text: Generic sample from Homo sapiens


HEK ChIP DNA rep2

text: Gene Expression Omnibus

text: live

text: Generic

text: HEK 293T

text: RNA pol II (ab5408)

text: Homo sapiens

text: Generic sample from Homo sapiens


E14Tg2a murine ES cells Brg J1

text: Gene Expression Omnibus

text: live

text: Generic

text: E14Tg2a murine ES cells

characteristic: cell type

text: anti-Brg/Brm Clone J1

text: source: E14Tg2a murine ES cells; description: ChIP-seq

characteristic: developmental stage

text: Mus musculus

text: Generic sample from Mus musculus


E14Tg2a murine ES cells IgG

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: E14Tg2a murine ES cells

text: Rabbit control IgG

text: Mus musculus

text: Generic sample from Mus musculus


text: DNA Data Bank of Japan

characteristic: INSDC first public

text: live

text: Generic

text: liver; hepatocellular carcinoma HepG2

text: Homo sapiens

text: Generic sample from Homo sapiens


text: DNA Data Bank of Japan

characteristic: INSDC last update

text: live

text: Generic

text: Nipponbare

characteristic: cultivar

text: Regenerated plant (M4 generation) from cultured cells of rice

text: Oryza sativa Japonica Group

characteristic: strain

text: Generic sample from Oryza sativa Japonica Group


HMP083-454 Sample

text: J. Craig Venter Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Staphylococcus warneri is an aerobic, gram-positive coccus. It is a common member of the normal human skin microflora. It is an opportunistic pathogen in immunocompromised patients. This strain was isolated from human skin.

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft46x;77

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Right arm

characteristic: misc_param: HMP body site

text: skin

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Staphylococcus warneri L37603

text: Staphylococcus warneri L37603, SK66

characteristic: project name

text: Reference Genome

text: not determined

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-120, ATCC 27836, DSM 20316

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Staphylococcus warneri L37603


ESC

characteristic: External Id

text: Institute for Molecular Bioscience, The University of Queensland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: undifferentiated mouse embryonic stem cells (ESCs)

characteristic: description

text: Mus musculus

characteristic: organism

characteristic: strain

text: Generic sample from Mus musculus

characteristic: title


EB

text: live

text: Generic

text: Mouse embryoid bodies (EB) transcripts

text: Mus musculus

text: Generic sample from Mus musculus


brain

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human brain tissue; description: RNA_seq

text: Homo sapiens

text: brain

characteristic: tissue

text: Generic sample from Homo sapiens


HME

text: Gene Expression Omnibus

text: live

text: Generic

text: HME

characteristic: cell line

text: source: Human HME cell line tissue; description: RNA_seq

text: Homo sapiens

text: Generic sample from Homo sapiens


breast

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human breast tissue; description: RNA_seq

text: Homo sapiens

text: breast

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human MCF-7 cell line tissue; description: RNA_seq

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human MB435 cell line; description: RNA_seq

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human T47D cell line; description: RNA_seq

text: Homo sapiens

text: Generic sample from Homo sapiens


MAQC human human cell lines

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human MAQC human cell lines tissue; description: RNA_seq

text: Homo sapiens

text: mixed brain

text: Generic sample from Homo sapiens


MAQC UHR

text: Gene Expression Omnibus

text: live

text: Generic

text: mixed human cell lines

text: source: Human cell lines; description: RNA_seq

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: source: human liver; description: RNA_seq

text: Homo sapiens

text: liver

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human heart tissue; description: RNA_seq

text: Homo sapiens

text: heart

text: Generic sample from Homo sapiens


skeletal muscle_1

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human skeletal muscle tissue; description: RNA_seq

text: Homo sapiens

text: skeletal muscle

text: Generic sample from Homo sapiens


colon

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human colon tissue; description: RNA_seq

text: Homo sapiens

text: colon

text: Generic sample from Homo sapiens


adipose

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human adipose tissue; description: RNA_seq

text: Homo sapiens

text: adipose

text: Generic sample from Homo sapiens


testes

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human testes tissue; description: RNA_seq

text: Homo sapiens

text: testes

text: Generic sample from Homo sapiens


lymph node

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human lymph node tissue; description: RNA_seq

text: Homo sapiens

text: lymph node

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Human BT474 cell line tissue; description: RNA_seq

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: CD133+ primary hematopoietic stem cells/progenitor cells (HSCs/HPCs)

characteristic: cell type

characteristic: chip antibody

text: source: CD133+ cells; description: ChIP-seq

text: Homo sapiens

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: CD133+ primary hematopoietic stem cells/progenitor cells (HSCs/HPCs)cells

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: PolII

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: CD36+ primary hematopoietic stem cells/progenitor cells (HSCs/HPCs)cells

text: source: CD36+ cells; description: ChIP-seq

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: PolII

text: Homo sapiens

text: Generic sample from Homo sapiens


Pha-4 emb replicate 1 POL II

text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

text: POL II

text: source: pha-4 transgenic worm OP37; description: ChIP-Seq

text: pha-4 transgenic

characteristic: genotype

text: embryo

characteristic: growth stage

text: Caenorhabditis elegans

text: Generic sample from Caenorhabditis elegans


Pha-4 emb replicate 2 POL II

text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: POL II

text: pha-4 transgenic

text: embryo

text: Caenorhabditis elegans


Pha-4 starved L1 replicate 1 POL II

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: POL II

characteristic: description

text: pha-4 transgenic

text: starved L1

text: Caenorhabditis elegans

characteristic: organism


Pha-4 starved L1 replicate 2 POL II

text: Gene Expression Omnibus

text: live

text: Generic

text: POL II

text: pha-4 transgenic

text: starved L1

text: Caenorhabditis elegans

characteristic: strain

characteristic: title


MAB-5 L3 replicate 1 GFP

text: Gene Expression Omnibus

text: live

text: Generic

text: anti-GFP to MAB-5

text: source: mab-5 transgenic worm OP26; description: ChIP-seq

text: mab-5 transgenic

text: Caenorhabditis elegans


MAB-5 L3 replicate 1 Input

text: Gene Expression Omnibus

text: live

text: Generic

text: none, input DNA

text: mab-5 transgenic

text: Caenorhabditis elegans


MAB-5 L3 replicate 2 GFP

text: Gene Expression Omnibus

text: live

text: Generic

text: anti-GFP to MAB-5

text: mab-5 transgenic

text: Caenorhabditis elegans


MAB-5 L3 replicate 2 Input

text: Gene Expression Omnibus

text: live

text: Generic

text: none, input DNA

text: mab-5 transgenic

text: Caenorhabditis elegans


DAF-16 L4/Young adult replicate 1 GFP

text: Gene Expression Omnibus

text: live

text: Generic

text: anti-GFP to DAF-16

text: source: daf-16 transgenic worm TJ356; description: ChIP-seq

text: L4/Young adult

text: Caenorhabditis elegans


name: DAF-16 L4/Young adult replicate 1 POL II

text: Gene Expression Omnibus

text: live

text: Generic

text: POL II

text: L4/Young adult

text: Caenorhabditis elegans


DAF-16 L4/Young adult replicate 1 Input

text: Gene Expression Omnibus

text: live

text: Generic

text: none, input DNA

text: L4/Young adult

text: Caenorhabditis elegans


DAF-16 L4/Young adult replicate 2 GFP

text: Gene Expression Omnibus

text: live

text: Generic

text: anti-GFP to DAF-16

text: L4/Young adult

text: Caenorhabditis elegans


name: DAF-16 L4/Young adult replicate 2 POL II

text: Gene Expression Omnibus

text: live

text: Generic

text: POL II

text: L4/Young adult

text: Caenorhabditis elegans


DAF-16 L4/Young adult replicate 2 Input

text: Gene Expression Omnibus

text: live

text: Generic

text: none, input DNA

text: L4/Young adult

text: Caenorhabditis elegans


ama-1 L4/young adult replicate 1 GFP

text: Gene Expression Omnibus

text: live

text: Generic

text: anti-GFP to AMA-1

text: source: ama-1 transgenic worm OP34; description: ChIP-seq

text: ama-1 transgenic

text: L4/young adult

text: Caenorhabditis elegans


ama-1 L4/young adult replicate 1 POL II

text: Gene Expression Omnibus

text: live

text: Generic

text: POL II

text: ama-1 transgenic

text: L4/young adult

text: Caenorhabditis elegans


ama-1 L4/young adult replicate 1 Input

text: Gene Expression Omnibus

text: live

text: Generic

text: none, input DNA

text: ama-1 transgenic

text: L4/young adult

text: Caenorhabditis elegans


ama-1 L4/young adult replicate 2 GFP

text: Gene Expression Omnibus

text: live

text: Generic

text: anti-GFP to AMA-1

text: ama-1 transgenic

text: L4/young adult

text: Caenorhabditis elegans


ama-1 L4/young adult replicate 2 POL II

text: Gene Expression Omnibus

text: live

text: Generic

text: POL II

text: ama-1 transgenic

text: L4/young adult

text: Caenorhabditis elegans


ama-1 L4/young adult replicate 2 Input

text: Gene Expression Omnibus

text: live

text: Generic

text: none, input DNA

text: ama-1 transgenic

text: L4/young adult

text: Caenorhabditis elegans


ERalpha control

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: cell line

text: ERalpha

text: source: MCF-7 cells; description: Chip-seq

text: Homo sapiens

text: Generic sample from Homo sapiens

text: mock

characteristic: treatment


ERalpha E2

characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: ERalpha

characteristic: chip antibody

text: Homo sapiens

text: Generic sample from Homo sapiens

text: E2 10 nM 1h


ERalpha Tam

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: ERalpha

text: Homo sapiens

text: Generic sample from Homo sapiens

text: Tamoxifen 1 uM 1h


ERalpha Fulv

text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: ERalpha

text: Homo sapiens

text: Generic sample from Homo sapiens

text: Fulvestrant 100 nM


RNAPII control

text: Gene Expression Omnibus

text: live

text: Generic

text: RNAPII

text: Homo sapiens

text: Generic sample from Homo sapiens

text: mock


RNAPII E2

text: Gene Expression Omnibus

text: live

text: Generic

text: RNAPII

text: Homo sapiens

text: Generic sample from Homo sapiens

text: E2 10 nM 1h


RNAPII Tam

text: Gene Expression Omnibus

text: live

text: Generic

text: RNAPII

text: Homo sapiens

text: Generic sample from Homo sapiens

text: Tamoxifen 1 uM 1h


RNAPII Fulv

text: Gene Expression Omnibus

text: live

text: Generic

text: RNAPII

text: Homo sapiens

text: Generic sample from Homo sapiens

text: Fulvestrant 100 nM


text: Gene Expression Omnibus

text: live

text: Generic

text: ColxCol

characteristic: cross

text: source: 5d post-fertilization siliques ColxCol; description: small RNA library

text: Arabidopsis thaliana

text: 5 day post-fertilization silique

characteristic: tissue

text: Generic sample from Arabidopsis thaliana


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ColxLer

text: source: 5d post-fertilization siliques ColxLer; description: small RNA library

text: Arabidopsis thaliana

text: 5 day post-fertilization silique


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: LerxLer

text: source: 5d post-fertilization siliques LerxLer; description: small RNA library

text: Arabidopsis thaliana

text: 5 day post-fertilization silique


text: Gene Expression Omnibus

text: live

text: Generic

text: LerxCol

text: source: 5d post-fertilization siliques LerxCol; description: small RNA library

characteristic: description

text: Arabidopsis thaliana

characteristic: organism

text: 5 day post-fertilization silique


small RNA from S2 cells (S2-NP)

text: Gene Expression Omnibus

text: live

text: Generic

text: Norbert Perrimon

characteristic: biomaterial provider

text: S2 cells

characteristic: cell type

text: source: Drosophila melanogaster S2 cells; description: Small RNA data. These data were produced for the modENCODE project *http://www.modencode.org/) and are unpublished at this time. In accordance with NHGRI guidelines for community resource projects (http://www.genome.gov/), there is no restriction on the use or analysis of these data. However, the end-user is asked to respect a nine-month moratorium (from the public submission date) before submitting manuscripts describing analysis of these data. If the data producer has published any description of these data before the nine-month period, the moratorium ceases to apply and this accession page will be updated to note the appropriate citation.

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster

characteristic: title


name: Solanum lycopersicum cv M82 trichome cDNA

characteristic: External Id

text: Michigan State University

text: live

text: Generic

text: Total trichomes from the stems and type VI glands from leaves of 3-week-old Solanum lycopersicum cv M82 plants

text: Solanum lycopersicum

characteristic: strain

text: Generic sample from Solanum lycopersicum


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: 4 weeks

characteristic: age

text: source: fully grown oocytes; description: Treatment protocol: Mice were injected with 5 IU of PMSG 48 hours prior to sacrifice.

text: female

characteristic: gender

text: Mus musculus

text: 19 to 24 bp

characteristic: small rna fraction

text: oocytes

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: 4 weeks

text: female

text: Mus musculus

text: 24 to 30 bp

text: oocytes

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 4 weeks

text: female

text: Mus musculus

text: 19 to 30 bp

text: oocytes

characteristic: tissue

text: Generic sample from Mus musculus


breast cancer cell line

text: Center for Systems Biology, Institute of Biophysics

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: breast cancer cell line

characteristic: description

text: Homo sapiens

text: Generic sample from Homo sapiens


Soils from western islands in Korea

text: Seoul National University

text: live

text: Generic

text: The islands were Soyunpyungdo, Oeyeondo, and Gageodo.

text: soil metagenome

characteristic: organism

text: Generic sample from soil metagenome


Islets

text: Merck

text: live

text: Generic

text: Mus musculus

text: Generic sample from Mus musculus

characteristic: title


Adipose

characteristic: External Id

text: Merck

text: live

text: Generic

text: Mus musculus

text: Generic sample from Mus musculus


Imprinting

text: Merck

text: live

text: Generic

text: Mus musculus

text: Generic sample from Mus musculus


text: BC Cancer Agency Michael Smith Genome Sciences Centre

text: live

text: Generic

text: Library constructed by Doug at CRC. Sample origin: Poly A+ RNA from Clontech, Normal human leukocyte, pooled from male/female Caucasians. 520bp T Cell Receptor Beta amplicon containing V,D and J regions was concatenated and sheared with size selection of 100-300bp fraction. DNA was polished, A-tailed, ligated to SLX-TS adapters and PCR amplified using primers 1.1 and 2.1.

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Hiroshima University

text: live

text: Generic

text: marine metagenome

text: Generic sample from marine metagenome


Varroa destructor

text: USDA-ARS

text: live

text: Generic

characteristic: collection-date

text: USA: Beltsville, MD

characteristic: country

text: Approximately 1200 mites isolated from a single colony in the 'Mushroom' apiary of the USDA-ARS Bee Research Lab, Beltsville, MD, USA. Mites are all of the 'Korean' mitochondrial haplotype and representative of the predominant V. destructor lineage found on all beekeeping continents except for Australia.

text: 2000 mites collected from colony 45 in the 'Mushroom' apiary of the USDA-ARS Bee Research Laboratory

characteristic: isolation-source

text: 39.0415160 N 76.8639570 W

characteristic: lat-lon

text: Varroa destructor

text: Korean

characteristic: strain

text: Generic sample from Varroa destructor


Apis mellifera

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Apis mellifera genomic sample

text: Apis mellifera

text: Generic sample from Apis mellifera


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Xylanimonas cellulosilytica DSM 15894

text: Xylanimonas cellulosilytica DSM 15894

text: DSM 15894

text: Generic sample from Xylanimonas cellulosilytica DSM 15894

text: type strain of Xylanimonas cellulosilytica

characteristic: type material


text: Community Cyberinfrastructure for Advanced Marine Microbial Ecology Research and Analysis

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: marine metagenome

text: Generic sample from environmental samples


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: 21 days (bolted)

characteristic: age

characteristic: antibody

text: source: whole plant; description: 100-200 bp IPed DNA: Col0_s_8_sequence.fastq Library Strategy: meDIP-seq. Libraries from immunoprecipitated DNA that was 100-200 bp or 200-300 bp in size were created following Illumina protocols.

characteristic: ecotype

text: Arabidopsis thaliana

text: aerial portion of plant

characteristic: tissue

text: Generic sample from Arabidopsis thaliana


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Seeds arrested at heart stage

text: source: dme endosperm; description: 100-200 bp IPed DNA: Colgl_s_6_sequence.fastq 200-300 bp IPed DNA: Colgl_s_7_sequence.fastq Library Strategy: meDIP-seq. Libraries from immunoprecipitated DNA that was 100-200 bp or 200-300 bp in size were created following Illumina protocols.

characteristic: description

text: Col-gl

text: Arabidopsis thaliana

characteristic: organism

text: dme-2 mutant endosperm

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: Torpedo stage seeds (6-7 DAP)

text: source: embryo; description: 100-200 bp IPed DNA: Colgl_s_1_sequence.fastq 200-300 bp IPed DNA: Colgl_s_2_sequence.fastq Library Strategy: meDIP-seq. Libraries from immunoprecipitated DNA that was 100-200 bp or 200-300 bp in size were created following Illumina protocols.

text: Col-gl

text: Arabidopsis thaliana

text: embryo


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: Torpedo stage seeds (6-7 DAP)

text: source: endosperm; description: 100-200 bp IPed DNA: Cogl_s_3_sequence.fastq 200-300 bp IPed DNA: Colgl_s_4_sequence.fastq Library Strategy: meDIP-seq. Libraries from immunoprecipitated DNA that was 100-200 bp or 200-300 bp in size were created following Illumina protocols.

text: Col-gl

text: Arabidopsis thaliana

text: endosperm


text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: Seeds arrested at heart stage

text: source: dme endosperm; description: 100-200 bp IPed DNA: Ler_s_6_sequence.fastq 200-300 bp IPed DNA: Ler_s_7_sequence.fastq Library Strategy: meDIP-seq. Libraries from immunoprecipitated DNA that was 100-200 bp or 200-300 bp in size were created following Illumina protocols.

text: Landsberg erecta

text: Arabidopsis thaliana

text: dme-2 mutant endosperm


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

text: Torpedo stage seeds (6-7 DAP)

text: source: embryo; description: 100-200 bp IPed DNA: Ler_s_1_sequence.fastq 200-300 bp IPed DNA: Ler_s_2_sequence.fastq Library Strategy: meDIP-seq. Libraries from immunoprecipitated DNA that was 100-200 bp or 200-300 bp in size were created following Illumina protocols.

text: Landsberg erecta

text: Arabidopsis thaliana

text: embryo


text: Gene Expression Omnibus

text: live

text: Generic

text: Torpedo stage seeds (6-7 DAP)

text: source: endosperm; description: 100-200 bp IPed DNA:Ler_s_3_sequence.fastq 200-300 bp IPed DNA: Ler_s_4_sequence.fastq Library Strategy: meDIP-seq. Libraries from immunoprecipitated DNA that was 100-200 bp or 200-300 bp in size were created following Illumina protocols.

text: Landsberg erecta

text: Arabidopsis thaliana

text: endosperm


Citrus Phloem HLB

text: Univeristy of Florida

text: live

text: Generic

text: Bark was peeled from surface sterilized branches of a Citrus sinensis tree symptomatic for Huanglongbing disease. Phloem cells were scrapped from the bark using a sterile scalpel. DNA was extracted directly from phloem cells using the Fast DNA Kit from QBiogene.

text: Citrus sinensis

text: Generic sample from Citrus sinensis


text: Gene Expression Omnibus

text: live

text: Generic

text: 5-7 weeks old plants

text: antibody against SEP3

text: source: Primary and secondary inflorescences of 5-7 weeks old plants; description: Chromatin IP against SEP3

text: wild-type

characteristic: genotype

text: Arabidopsis thaliana

text: Primary and secondary inflorescences


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

text: 5-7 weeks old plants

text: antibody against SEP3

text: Arabidopsis thaliana

text: Primary and secondary inflorescences


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

text: 5-7 weeks old plants

text: antibody against SEP3

text: Mutant:ag

text: Arabidopsis thaliana

text: Primary and secondary inflorescences


Armi Heterozygote

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

text: source: ovaries; description: small RNA sequencing

text: Drosophila melanogaster

text: armi1/TM3 and armi72.1/TM3

characteristic: strain

text: Generic sample from Drosophila melanogaster


Piwi Mutant

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: Drosophila melanogaster


SpnE Heterozygote

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster

text: spnE1/TM3 and spnE100.37/TM3


SpnE Mutant

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster


Squ Heterozygote

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster

text: squHE47/cyo and squPP32/cyo


Squ Mutant

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster


Vasa Heterozygote

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster

text: vasD5/cyo and vasPH165/cyo


Vasa Mutant

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster


Zuc Heterozygote

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster

text: zucHM27/cyo and zucDf(2l)PRL/cyo


Zuc Mutant

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster


Armi Mutant

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster


Aub Heterozygote

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster

text: aubHN2/cyo and aubQC42/cyo


Aub Mutant

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster


Flam Heterozygote

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster


Flam Mutant

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster


Krimp Heterozygote

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster


Krimp Mutant

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster


Piwi Heterozygote

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster

text: piwi1/cyo and piwi2/cyo


HMP094-454 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Mobiluncus mulieris is an anaerobic, motile, gram-positive rod. It may play a role in vaginitis. This strain was isolated from the human vaginal cavity.

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft82x;55

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Mobiluncus mulieris 28-1

text: Mobiluncus mulieris 28-1

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-125

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Mobiluncus mulieris 28-1


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: source: female body; description: Small RNA data. These data were produced for the modENCODE project *http://www.modencode.org/) and are unpublished at this time. In accordance with NHGRI guidelines for community resource projects (http://www.genome.gov/), there is no restriction on the use or analysis of these data. However, the end-user is asked to respect a nine-month moratorium (from the public submission date) before submitting manuscripts describing analysis of these data. If the data producer has published any description of these data before the nine-month period, the moratorium ceases to apply and this accession page will be updated to note the appropriate citation.

characteristic: description

text: Drosophila melanogaster

characteristic: organism

text: female body

characteristic: tissue

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

text: source: imaginal disc/brain; description: Small RNA data. These data were produced for the modENCODE project *http://www.modencode.org/) and are unpublished at this time. In accordance with NHGRI guidelines for community resource projects (http://www.genome.gov/), there is no restriction on the use or analysis of these data. However, the end-user is asked to respect a nine-month moratorium (from the public submission date) before submitting manuscripts describing analysis of these data. If the data producer has published any description of these data before the nine-month period, the moratorium ceases to apply and this accession page will be updated to note the appropriate citation.

text: Drosophila melanogaster

text: imaginal disc/brain


text: Gene Expression Omnibus

text: live

text: Generic

text: source: male body; description: Small RNA data. These data were produced for the modENCODE project *http://www.modencode.org/) and are unpublished at this time. In accordance with NHGRI guidelines for community resource projects (http://www.genome.gov/), there is no restriction on the use or analysis of these data. However, the end-user is asked to respect a nine-month moratorium (from the public submission date) before submitting manuscripts describing analysis of these data. If the data producer has published any description of these data before the nine-month period, the moratorium ceases to apply and this accession page will be updated to note the appropriate citation.

text: Drosophila melanogaster

text: male body


text: Gene Expression Omnibus

text: live

text: Generic

text: Kc

characteristic: cell line

text: source: Kc cell line; description: Small RNA data. These data were produced for the modENCODE project *http://www.modencode.org/) and are unpublished at this time. In accordance with NHGRI guidelines for community resource projects (http://www.genome.gov/), there is no restriction on the use or analysis of these data. However, the end-user is asked to respect a nine-month moratorium (from the public submission date) before submitting manuscripts describing analysis of these data. If the data producer has published any description of these data before the nine-month period, the moratorium ceases to apply and this accession page will be updated to note the appropriate citation.

text: Drosophila melanogaster


HMP089-454 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Pyramidobacter piscolens is a member of the poorly characterized phylum Synergistes. It is a gram-negative, obligate anaerobe bacillus that has recently been reported in endodontic infections, and therefore may be part of the etiology of periradicular diseases. It is found in the human oral and vaginal cavities. This strain was isolated from the human oral cavity.

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft110x;140

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Pyramidobacter piscolens W5455

text: Pyramidobacter piscolens W5455

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: DSM 21147, CCUG 55836

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Pyramidobacter piscolens W5455

text: type strain of Pyramidobacter piscolens

characteristic: type material


FWYU

characteristic: External Id

text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Escherichia coli DH1

characteristic: description

text: Escherichia coli DH1

characteristic: organism

text: Generic sample from Escherichia coli DH1

characteristic: title


text: Virginia Commonwealth University

text: live

text: Generic

text: HapMap Sample NA10835

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Virginia Commonwealth University

text: live

text: Generic

text: Personal Genome Project Sample Number One

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Virginia Commonwealth University

text: live

text: Generic

text: Personal Genome Project Sample Two

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Virginia Commonwealth University

text: live

text: Generic

text: Personal Genome Project Sample Three

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Virginia Commonwealth University

text: live

text: Generic

text: Personal Genome Project Sample Nine

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Virginia Commonwealth University

text: live

text: Generic

text: Personal Genome Project Sample Ten

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Virginia Commonwealth University

text: live

text: Generic

text: Personal Genome Project Sample 9

text: Homo sapiens

text: Generic sample from Homo sapiens


FXNO

text: live

text: Generic

text: Dethiobacter alkaliphilus AHT 1

text: Dethiobacter alkaliphilus AHT 1

text: AHT 1

text: Generic sample from Dethiobacter alkaliphilus AHT 1

text: type strain of Dethiobacter alkaliphilus


text: Roche NimbleGen

text: live

text: Generic

text: C57BL/6J-Kit<W-20J>/J Sample can be obtained using JAX order ID: 000169

text: Mus musculus

text: Generic sample from Mus musculus


text: Roche NimbleGen

text: live

text: Generic

text: C57BL/6J-Kit<W-39J>/J Sample can be obtained using JAX order ID: 000062

text: Mus musculus

text: Generic sample from Mus musculus


text: Roche NimbleGen

text: live

text: Generic

text: C57BL/6J-Kit<W-40J>/J Sample can be obtained using JAX order ID: 000121

text: Mus musculus

text: Generic sample from Mus musculus


text: Roche NimbleGen

text: live

text: Generic

text: B6.D2-Kit<W-73J>/J Sample can be obtained using JAX order ID: 001563

text: Mus musculus

text: Generic sample from Mus musculus


text: Roche NimbleGen

text: live

text: Generic

text: C57BL/6J-Kit<W-41J>/J Sample can be obtained using JAX order ID: 000119

text: Mus musculus

text: Generic sample from Mus musculus


text: Medical Biofilm Research Institute

text: live

text: Generic

text: isolated from chronic wound

text: Pseudomonas aeruginosa

text: Generic sample from Pseudomonas aeruginosa


text: Università degli Studi di Milano

text: live

text: Generic

text: Juvenile leaf tissue from Vitis vinifera clone pn40024

text: Vitis vinifera

text: Generic sample from Vitis vinifera


text: University of Texas

text: live

text: Generic

text: Argentina

characteristic: isolation-source

text: uncultured actinomycete

text: Mycocepurus smithii

characteristic: specific host

text: worker

characteristic: tissue-type

text: Generic sample from uncultured actinomycete


text: Washington University Center for Genome Sciences

text: live

text: Generic

text: human gut metagenome

text: Generic sample from human gut metagenome


text: University of Texas

text: live

text: Generic

text: Austin, TX

text: uncultured actinomycete

text: Cyphomyrmex wheeleri

text: worker


text: University of Texas

text: live

text: Generic

text: Reeve, LA, USA

text: uncultured actinomycete

text: Trachymyrmex septentrionalis

text: worker


text: University of Texas

text: live

text: Generic

text: Panama

text: uncultured actinomycete

text: Mycocepurus smithii

text: worker


text: University of Texas

text: live

text: Generic

text: Argentina

text: uncultured actinomycete

text: Mycocepurus smithii

text: garden


text: University of Texas

text: live

text: Generic

text: Austin, TX

text: uncultured actinomycete

text: Cyphomyrmex wheeleri

text: garden


text: University of Texas

text: live

text: Generic

text: Reeve, LA, USA

text: uncultured actinomycete

text: Trachymyrmex septentrionalis

text: garden


text: University of Texas

text: live

text: Generic

text: Panama

text: uncultured actinomycete

text: Mycocepurus smithii

text: garden


WT MEF uH2A

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: antibody

text: source: Bmi1 WT C57BL/6 MEF cells; description: Chromatin IP with anti-uH2A E6C5

text: Bmi1 WT

characteristic: genotype

text: Mus musculus

text: Generic sample from Mus musculus


Bmi1 KO MEF uH2A

characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: source: Bmi1 KO C57BL/6 MEF cells; description: Chromatin IP with anti-uH2A E6C5

text: Bmi1 KO

text: Mus musculus

text: Generic sample from Mus musculus


Tae small RNA

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: source: root, shoot, leaf, young spike; description: Gel pufified small RNAs (16 -25 nt) were ligated to a 5��� adaptor and a 3��� adaptor sequentially, RT-PCR-amplified, and used for sequencing directly.

text: Chinese Spring

characteristic: line

text: Triticum aestivum

text: root, shoot, leaf, young spike

characteristic: tissue

text: Generic sample from Triticum aestivum


BdR small RNA

text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: source: young spike (reproductive); description: Gel pufified small RNAs (16 -25 nt) were ligated to a 5��� adaptor and a 3��� adaptor sequentially, RT-PCR-amplified, and used for sequencing directly.

text: Brachypodium distachyon

text: young spike

text: Generic sample from Brachypodium distachyon


BdV small RNA

text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: source: root, shoot, leaf (vegetative); description: Gel pufified small RNAs (16 -25 nt) were ligated to a 5��� adaptor and a 3��� adaptor sequentially, RT-PCR-amplified, and used for sequencing directly.

text: Brachypodium distachyon

text: root, shoot, leaf


text: Baylor College of Medicine

text: live

text: MIGS.ba

characteristic: SRA accession

text: Newbler v. 1.1.03.24

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Actinomyces urogenitalis DSM 15434

characteristic: description

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft35.81x;1230

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Actinomyces urogenitalis DSM 15434

characteristic: organism

text: Actinomyces urogenitalis DSM 15434

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina

characteristic: sequencing method

characteristic: sop

text: DSM 15434

text: Homo sapiens

text: DSM 15434

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Actinomyces urogenitalis DSM 15434

text: type strain of Actinomyces urogenitalis

characteristic: type material


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: chip antibody

text: L1 arrest

characteristic: condition

text: source: 12 hr L1 arrest; description: ChIP-seq; The file GSM351162_woldlab_080703_HWI-EAS229_0038_3055KAAXX_6.srf may be truncated.

characteristic: description

text: Caenorhabditis elegans

text: wild-type N2

text: 12 hr

characteristic: time

text: Generic sample from Caenorhabditis elegans

characteristic: title


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Thermoanaerobacter italicus Ab9

text: Thermoanaerobacter italicus Ab9

characteristic: organism

text: Generic sample from Thermoanaerobacter italicus Ab9

text: type strain of Thermoanaerobacter italicus


Free-living size fraction (0.2-1.0 um)

text: University of Georgia

text: live

text: Generic

text: All sequenced PCR amplicons of the free-living size fraction (0.2-1.0um) representing those sequenced products for the universal, clade and subclade primer sets.

text: marine metagenome

text: Generic sample from marine metagenome


name: Particle-associated size fraction (>1.0 um)

text: University of Georgia

text: live

text: Generic

text: All sequenced PCR amplicons of the particle-associated size fraction (>1.0um) representing those sequenced products for the universal, clade and subclade primer sets.

text: marine metagenome

text: Generic sample from marine metagenome


text: live

text: Generic

text: Hirschia baltica ATCC 49814

text: Hirschia baltica ATCC 49814

text: ATCC 49814

characteristic: strain

text: Generic sample from Hirschia baltica ATCC 49814

text: type strain of Hirschia baltica


text: live

text: Generic

text: Sideroxydans lithotrophicus ES-1

text: Sideroxydans lithotrophicus ES-1

text: Generic sample from Sideroxydans lithotrophicus ES-1

text: type strain of Sideroxydans lithotrophicus

characteristic: type material


characteristic: External Id

text: live

text: Generic

text: Clostridium carboxidivorans P7

text: Clostridium carboxidivorans P7

text: Generic sample from Clostridium carboxidivorans P7

text: type strain of Clostridium carboxidivorans


characteristic: GOLD Stamp ID

text: Gram-

characteristic: Gram Staining

characteristic: Greengenes ID

characteristic: INSDC center name

text: live

text: Generic

text: Nonsporulating

characteristic: Sporulation

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Keywords: GSC:MIGS:2.1

text: Sediment

characteristic: environment

characteristic: investigation type

text: Motile

characteristic: motility

text: Geobacter sp. M18

text: Geobacter sp. M18

characteristic: project name

text: anaerobe

text: Mesophile

characteristic: temperature range

text: Geobacter sp. M18, complete genome.

text: chemolithotroph


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CD4+ T cell

characteristic: cell type

text: source: CD4+ T cell mRNA

characteristic: description

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: Jurkat T cell

text: source: Jurkat T cell mRNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embryo; description: Bisulfite sequencing

characteristic: ecotype

text: wild type

characteristic: genotype

text: Arabidopsis thaliana

text: Embryo

characteristic: tissue

text: Generic sample from Arabidopsis thaliana


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Wild-type endosperm; description: Bisulfite sequencing

text: wild type

text: Arabidopsis thaliana

text: endosperm


text: Gene Expression Omnibus

text: live

text: Generic

text: source: dme endosperm; description: Bisulfite sequencing

text: dme (DEMETER) mutant

text: Arabidopsis thaliana

text: endosperm


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Aerial tissues; description: Bisulfite sequencing

text: wild type

text: Arabidopsis thaliana

text: Aerial tissues


characteristic: GOLD Stamp ID

text: Gram-

characteristic: Gram Staining

characteristic: Greengenes ID

text: live

text: Generic

text: Nonsporulating

characteristic: Sporulation

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Keywords: GSC:MIGS:2.1

text: Fresh water

characteristic: environment

characteristic: investigation type

text: Pondwater

characteristic: isolation site

text: pond water

characteristic: isolation-source

text: Motile

characteristic: motility

text: Asticcacaulis excentricus CB 48

text: Asticcacaulis excentricus CB 48

characteristic: project name

text: CB 48, AC 48, ATCC 15261, DSM 4724, NCIB 9791

text: aerobe

text: CS 48

characteristic: strain

text: Mesophile

characteristic: temperature range

text: Asticcacaulis excentricus CB 48 plasmid pASTEX02, complete sequence.


characteristic: External Id

text: DOEM 2004

characteristic: Funding Program

text: Gram+

text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Sporulating

text: free living

text: Rod-shaped

text: USA

characteristic: country

text: Keywords: GSC:MIGS:2.1

characteristic: description

text: Bath Hot Spring in Yellowstone National Park

text: Bath Hot Spring, Yellowstone National Park

text: 44.376262 N 110.690383 W

characteristic: lat lon

text: Motile

text: Geobacillus sp. Y4.1MC1

characteristic: organism

text: Geobacillus sp. Y4.1MC1

text: facultative

text: Thermophile

text: Geobacillus sp. Y4.1MC1 plasmid pGY4MC101, complete sequence.

characteristic: title

text: chemoorganotroph


text: live

text: Generic

text: Hyphomicrobium denitrificans ATCC 51888

text: Hyphomicrobium denitrificans ATCC 51888

text: ATCC 51888

characteristic: strain

text: Generic sample from Hyphomicrobium denitrificans ATCC 51888

text: type strain of Hyphomicrobium denitrificans

characteristic: type material


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Chromatin IP against H3K27me3

characteristic: antibody

text: memory CD8 T cells

characteristic: cell type

text: source: memory CD8 T cells; description: Chromatin IP against H3K27me3

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Chromatin IP against H3K4me3

text: memory CD8 T cells

text: source: memory CD8 T cells; description: Chromatin IP against H3K4me3

text: Homo sapiens

text: Generic sample from Homo sapiens


text: DOE-CSP 2006

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Gram-

characteristic: Gram Staining

characteristic: Greengenes ID

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Nonsporulating

characteristic: Sporulation

text: free living

characteristic: biotic relationship

text: Keywords: GSC:MIGS:2.1

text: Soil

characteristic: environment

characteristic: investigation type

text: laboratory waste water treatment reactor

characteristic: isolation site

characteristic: isolation-source

text: Motile

characteristic: motility

text: Nitrosomonas sp. AL212

text: Nitrosomonas sp. AL212

characteristic: project name

text: aerobe

text: Mesophile

characteristic: temperature range

text: Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequence.

text: Lithotroph, Oligotroph


characteristic: External Id

text: Gram-

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: free living

text: Rod-shaped

characteristic: cell shape

text: USA

characteristic: country

text: Keywords: GSC:MIGS:2.1

characteristic: description

text: Fresh water

text: iron contaminated groundwater in Michigan

text: Motile

text: Gallionella capsiferriformans ES-2

characteristic: organism

text: Gallionella capsiferriformans ES-2

text: aerobe

characteristic: strain

text: Mesophile

text: Gallionella capsiferriformans ES-2, complete genome.

characteristic: title

text: chemolithoautotroph

text: type strain of Gallionella capsiferriformans

characteristic: type material


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Sanguibacter keddieii DSM 10542

text: Sanguibacter keddieii DSM 10542

text: DSM 10542

text: Generic sample from Sanguibacter keddieii DSM 10542

text: type strain of Sanguibacter keddieii


text: live

text: Generic

text: DSM 11002

text: Generic sample from Dethiosulfovibrio peptidovorans DSM 11002

text: type strain of Dethiosulfovibrio peptidovorans


text: live

text: Generic

text: Thermonospora curvata DSM 43183

text: Thermomonospora curvata DSM 43183

text: DSM 43183

text: Generic sample from Thermomonospora curvata DSM 43183

text: type strain of Thermomonospora curvata


Manduca midgut

text: University of Exeter - Center for Ecology and Conservation

text: live

text: Generic

text: Manduca sexta

text: Generic sample from Manduca sexta


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Halogeometricum borinquense DSM 11551

text: Halogeometricum borinquense DSM 11551

text: DSM 11551

text: Generic sample from Halogeometricum borinquense DSM 11551

text: type strain of Halogeometricum borinquense


text: live

text: Generic

text: Conexibacter woesei DSM 14684

text: Conexibacter woesei DSM 14684

text: DSM 14684

text: Generic sample from Conexibacter woesei DSM 14684

text: type strain of Conexibacter woesei


text: live

text: Generic

text: Jonesia denitrificans DSM 20603

text: Jonesia denitrificans DSM 20603

text: DSM 20603

text: Generic sample from Jonesia denitrificans DSM 20603

text: type strain of Jonesia denitrificans


text: live

text: Generic

text: Cryptobacterium curtum DSM 15641

text: Cryptobacterium curtum DSM 15641

text: DSM 15641

text: Generic sample from Cryptobacterium curtum DSM 15641

text: type strain of Cryptobacterium curtum


text: live

text: Generic

text: Streptosporangium roseum DSM 43021

text: Streptosporangium roseum DSM 43021

text: DSM 43021

text: Generic sample from Streptosporangium roseum DSM 43021

text: type strain of Streptosporangium roseum


text: live

text: Generic

text: Kribbella flavida DSM 17836

text: Kribbella flavida DSM 17836

text: DSM 17836

text: Generic sample from Kribbella flavida DSM 17836

text: type strain of Kribbella flavida


text: live

text: Generic

text: Sphaerobacter thermophilus DSM 20745

text: Sphaerobacter thermophilus DSM 20745

text: DSM 20745

text: Generic sample from Sphaerobacter thermophilus DSM 20745

text: type strain of Sphaerobacter thermophilus


Wild-type 30 day

text: Weizmann Institute of Science

text: live

text: Generic

text: Mus musculus

text: Generic sample from Mus musculus


CerS2 knockout 30 day

text: Weizmann Institute of Science

text: live

text: Generic

text: Mus musculus

text: Generic sample from Mus musculus


text: live

text: Generic

text: Allochromatium vinosum DSM 180

text: Allochromatium vinosum DSM 180

text: DSM 180

text: Generic sample from Allochromatium vinosum DSM 180

text: type strain of Allochromatium vinosum


text: live

text: Generic

text: Leptotrichia buccalis DSM 1135

text: Leptotrichia buccalis C-1013-b

text: DSM 1135

text: Generic sample from Leptotrichia buccalis C-1013-b

text: type strain of Leptotrichia buccalis


text: live

text: Generic

text: Haliangium ochraceum DSM 14365

text: Haliangium ochraceum DSM 14365

text: DSM 14365

text: Generic sample from Haliangium ochraceum DSM 14365

text: type strain of Haliangium ochraceum


text: live

text: Generic

text: Tsukamurella paurometabola DSM 20162

text: Tsukamurella paurometabola DSM 20162

text: DSM 20162

text: Generic sample from Tsukamurella paurometabola DSM 20162

text: type strain of Tsukamurella paurometabola


text: live

text: Generic

text: Spirosoma linguale DSM 74

text: Spirosoma linguale DSM 74

text: DSM 74

text: Generic sample from Spirosoma linguale DSM 74

text: type strain of Spirosoma linguale


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Tissue Type : normal Gender : Sample Type :

text: Biomphalaria glabrata

text: Generic sample from Biomphalaria glabrata


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Gordonia bronchialis DSM 43247

text: Gordonia bronchialis DSM 43247

text: DSM 43247

text: Generic sample from Gordonia bronchialis DSM 43247

text: type strain of Gordonia bronchialis


text: live

text: Generic

characteristic: culture collection

text: Meiothermus ruber DSM 1279

text: Meiothermus ruber DSM 1279

text: DSM 1279

text: Generic sample from Meiothermus ruber DSM 1279

text: type strain of Meiothermus ruber


characteristic: External Id

text: live

text: Generic

text: Desulfomicrobium baculatum DSM 4028

text: Desulfomicrobium baculatum DSM 4028

text: DSM 4028

text: Generic sample from Desulfomicrobium baculatum DSM 4028

text: type strain of Desulfovibrio baculatus


characteristic: INSDC center name

text: live

text: Generic

text: Streptobacillus moniliformis DSM 12112

text: Streptobacillus moniliformis DSM 12112

text: DSM 12112

text: Generic sample from Streptobacillus moniliformis DSM 12112

text: type strain of Streptobacillus moniliformis


text: live

characteristic: INSDC status

text: Generic

text: Kangiella koreensis DSM 16069

text: Kangiella koreensis DSM 16069

text: DSM 16069

text: Generic sample from Kangiella koreensis DSM 16069

text: type strain of Kangiella koreensis


text: live

text: Generic

characteristic: NCBI submission model

text: Denitrovibrio acetiphilus DSM 12809

text: Denitrovibrio acetiphilus DSM 12809

text: DSM 12809

text: Generic sample from Denitrovibrio acetiphilus DSM 12809

text: type strain of Denitrovibrio acetiphilus


text: live

text: Generic

characteristic: NCBI submission package

text: Sebaldella termitidis ATCC 33386

text: Sebaldella termitidis ATCC 33386

text: ATCC 33386

text: Generic sample from Sebaldella termitidis ATCC 33386

text: type strain of Sebaldella termitidis


text: live

text: Generic

characteristic: SRA accession

text: Planctomyces limnophilus DSM 3776

text: Planctopirus limnophila DSM 3776

text: DSM 3776

text: Generic sample from Planctomyces limnophilus DSM 3776

text: type strain of Planctopirus limnophila


text: live

text: Generic

text: Veillonella parvula DSM 2008

text: Veillonella parvula DSM 2008

text: DSM 2008

text: Generic sample from Veillonella parvula DSM 2008

text: type strain of Veillonella parvula


text: live

text: Generic

text: Halorhabdus utahensis DSM 12940

text: Halorhabdus utahensis DSM 12940

text: DSM 12940

text: Generic sample from Halorhabdus utahensis DSM 12940

text: type strain of Halorhabdus utahensis


text: live

text: Generic

text: Geodermatophilus obscurus DSM 43160

text: Geodermatophilus obscurus DSM 43160

text: DSM 43160

text: Generic sample from Geodermatophilus obscurus DSM 43160

text: type strain of Geodermatophilus obscurus


text: live

text: Generic

text: Sulfurospirillum deleyianum DSM 6946

text: Sulfurospirillum deleyianum DSM 6946

text: DSM 6946

text: Generic sample from Sulfurospirillum deleyianum DSM 6946

text: type strain of Sulfurospirillum deleyianum


characteristic: GOLD Stamp ID

text: Prodigal

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

characteristic: Greengenes ID

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: ATCC 35296

characteristic: Source of Isolate

text: Sporulating

characteristic: Sporulation

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Keywords: GSC:MIGS:2.1

text: Soil

characteristic: environment

characteristic: investigation type

text: cellulose digester

characteristic: isolation site

text: Nonmotile

characteristic: motility

text: Clostridium cellulovorans 743B

text: Clostridium cellulovorans 743B, ATCC 35296

characteristic: project name

text: ATCC 35296

text: anaerobe

characteristic: sequencing depth

text: Mesophile

characteristic: temperature range

text: Clostridium cellulovorans 743B, complete genome.

text: chemoorganotroph

text: type strain of Clostridium cellulovorans


characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Influent to Jones Island waste water treatment plant, Milwaukee, WI August, 21, 2007

characteristic: description

text: wastewater metagenome

characteristic: organism

text: Generic sample from wastewater metagenome

characteristic: title


text: Marine Biological Laboratory

text: live

text: Generic

text: Influent to South Shore waste water treatment plant, Milwaukee, WI August, 21, 2007

text: wastewater metagenome


text: Marine Biological Laboratory

text: live

text: Generic

text: Influent to Jones Island waste water treatment plant, Milwaukee, WI December 11, 2007

text: wastewater metagenome


text: Marine Biological Laboratory

text: live

text: Generic

text: Influent to South Shore waste water treatment plant, Milwaukee, WI December 11, 2007

text: wastewater metagenome


text: Marine Biological Laboratory

text: live

text: Generic

text: Influent to South Shore waste water treatment plant, Milwaukee, WI April 18, 2007

text: wastewater metagenome


text: Marine Biological Laboratory

text: live

text: Generic

text: Influent to Jones Island waste water treatment plant, Milwaukee, WI April 18, 2007

text: wastewater metagenome


text: Marine Biological Laboratory

text: live

text: Generic

text: Influent to Jones Island waste water treatment plant, Milwaukee, WI April 20, 2005

text: wastewater metagenome


text: Marine Biological Laboratory

text: live

text: Generic

text: Influent to South Shore waste water treatment plant, Milwaukee, WI April 20, 2005

text: wastewater metagenome


text: Marine Biological Laboratory

text: live

text: Generic

text: Clear water at junction of three main rivers that lead to Lake Michigan, June 19, 2006

text: freshwater metagenome

text: Generic sample from freshwater metagenome


Sample 2

text: febit biomed gmbh

text: live

text: Generic

text: Homo sapiens

text: Generic sample from Homo sapiens


Sample 3

text: febit biomed gmbh

text: live

text: Generic

text: Homo sapiens

text: Generic sample from Homo sapiens


S2R (biological replicate 1)

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: cell type

text: source: Drosophila melanogaster S2R cells; description: Small RNA data. These data were produced for the modENCODE project *http://www.modencode.org/) and are unpublished at this time. In accordance with NHGRI guidelines for community resource projects (http://www.genome.gov/), there is no restriction on the use or analysis of these data. However, the end-user is asked to respect a nine-month moratorium (from the public submission date) before submitting manuscripts describing analysis of these data. If the data producer has published any description of these data before the nine-month period, the moratorium ceases to apply and this accession page will be updated to note the appropriate citation.

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


S2R (biological replicate 2)

text: Gene Expression Omnibus

text: live

text: Generic

text: Drosophila melanogaster


Olea europaea Coratina cDNA 45 DAF

text: University of Naples Federico II

text: live

text: Generic

text: Fruits of Coratina, a widely cultivated variety characterized by a very high phenolic content were harvested at 45 days after flowering (complete fruit set) and used as starting material for monitoring transcriptome.

text: Olea europaea

text: Generic sample from Olea europaea


Olea europaea Coratina cDNA 135 DAF

text: University of Naples Federico II

text: live

text: Generic

text: Fruits of Coratina, a widely cultivated variety characterized by a very high phenolic content were harvested at 135 days after flowering (veraison) and used as starting material for monitoring transcriptome.

text: Olea europaea

text: Generic sample from Olea europaea


Olea europaea Tendellone cDNA 45 DAF

text: University of Naples Federico II

text: live

text: Generic

text: Fruits of Tendellone, an oleuropein-lacking natural variant, were harvested at 45 days after flowering (completed fruit set) and used as starting material for monitoring transcriptome.

text: Olea europaea

text: Generic sample from Olea europaea


Olea europaea Tendellone cDNA 135 DAF

text: University of Naples Federico II

text: live

text: Generic

text: Fruits of Tendellone, an oleuropein-lacking natural variant, were harvested at 135 days after flowering (veraison) and used as starting material for monitoring transcriptome.

text: Olea europaea

text: Generic sample from Olea europaea


text: Broad Institute

text: live

text: Generic

text: Dorea sp. 4_1_36FAA

characteristic: sample name

characteristic: strain

text: Generic sample from Dorea sp. 4_1_36FAA


Seasonal eukaryotic freshwater samples

text: University of Veterinary Medicine Vienna

text: live

text: Generic

text: June

characteristic: barcode

text: October

text: September

text: May, begin

text: July, begin

text: July, end

text: March

text: April

text: August

text: May, end

text: Freshwater samples were collected at 10 different timepoints for eukaryotic population analysis by 18S rRNA typing. The water samples were collected from a site at the oligotrophic Lake Fuschlsee in the district Salzkammergut in Austria (maximum depth of the lake is 66 m). They are integrated samples covering the upper 10 m of the water column and were collected within the pelagic zone with a sampling tube. Three integrated samples from the same site were pooled prior to further processing. Ten collections (= 10 samples) were done between March 2007 and October 2007.

text: uncultured eukaryote

text: Generic sample from uncultured eukaryote


Sample 1

text: febit biomed gmbh

text: live

text: Generic

text: Purchased human genomic DNA (Cat. No. G304A from Promega, Madison, USA) Lot.: 22990802. Human genomic DNA is purified, and greater than 90% of the DNA is longer than 50kb in size as measured by pulsed-field gel electrophoresis. The DNA is suitable for Southern blot hybridizations, genomic analysis (including PCR), and genomic library construction. Human Genomic DNA comes from multiple anonymous donors.

text: Homo sapiens

text: Generic sample from Homo sapiens


Mus musculus

text: Beijing Institute of Genomics Chinese Acad of Sci - Key Lab

text: live

text: Generic

text: Mus musculus

text: Generic sample from Mus musculus


difficult BACs

text: NIH Intramural Sequencing Center

text: live

text: Generic

text: 12 pooled BACs that were difficult to sequence via capillary-based approaches

text: Mammalia

text: Generic sample from Mammalia


straight-forward BACs

text: NIH Intramural Sequencing Center

text: live

text: Generic

text: 12 BACs that were straight forward to sequence via capillary-based approaches

text: Mammalia

text: Generic sample from Mammalia


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Dickeya dadantii Ech703

text: Musicola paradisiaca Ech703

text: Generic sample from Dickeya dadantii Ech703


text: live

text: Generic

text: Dickeya zeae Ech1591

text: Dickeya chrysanthemi Ech1591

text: Generic sample from Dickeya zeae Ech1591


text: live

text: Generic

text: Escherichia coli BL21(DE3)

text: BL21-Gold(DE3)pLysS AG

text: Generic sample from Escherichia coli 'BL21-Gold(DE3)pLysS AG'


text: live

text: Generic

text: Methanocaldococcus vulcanius M7

text: Methanocaldococcus vulcanius M7

text: Generic sample from Methanocaldococcus vulcanius M7

text: type strain of Methanocaldococcus vulcanius

characteristic: type material


characteristic: External Id

text: live

text: Generic

text: Pectobacterium wasabiae WPP163

text: Pectobacterium parmentieri WPP163

text: Generic sample from Pectobacterium wasabiae WPP163


characteristic: INSDC center name

text: live

text: Generic

text: Acidovorax delafieldii 2AN

text: Acidovorax delafieldii 2AN

text: Generic sample from Acidovorax delafieldii 2AN


characteristic: INSDC first public

text: live

text: Generic

text: Halothiobacillus neapolitanus c2

text: Halothiobacillus neapolitanus c2

text: Generic sample from Halothiobacillus neapolitanus c2

text: type strain of Halothiobacillus neapolitanus


characteristic: INSDC last update

text: live

text: Generic

text: Dictyoglomus turgidum DSM 6724

text: Dictyoglomus turgidum DSM 6724

text: DSM 6724

text: Generic sample from Dictyoglomus turgidum DSM 6724

text: type strain of Dictyoglomus turgidum


text: Medical Biofilm Research Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Escherichia coli O157:H7 str. FRIK966

text: Generic sample from Escherichia coli O157:H7 str. FRIK966


text: Medical Biofilm Research Institute

text: live

characteristic: INSDC status

text: Generic

text: Escherichia coli O157:H7 str. FRIK2000

text: Generic sample from Escherichia coli O157:H7 str. FRIK2000


ciona

text: University of Oklahoma Norman Campus, Advanced Center for Genome Technology

text: live

text: Generic

characteristic: NCBI submission model

text: Random-primed SL- PCR consists of reverse-transcription primed by random hexamer sequences linked 3' to an arbitrary 25-nt anchor sequence (AN), followed by PCR using the AN sequence as a leftward primer and a 23-mer primer terminating in the 16-nt SL sequence, which is present at the 5'-end of trans-spliced mRNAs, as the rightward primer (SL primer). Because one of the amplification primers includes the SL sequence, SL-PCR products are expected to be 5'-segments of trans-spliced mRNAs, and because the initial reverse transcription was random-hexamer-primed, all trans-spliced mRNAs are expected to be represented, regardless of length. We applied random-primed SL-PCR to RNA isolated from tailbud stage embryos of Ciona intestinalis. Adult Ciona intestinalis collected under permit in San Diego, California USA were maintained in a closed marine aquarium under constant illumination to induce gamete accumulation. Tailbud embryos were prepared by mixing eggs and sperm dissected from several individual adults and incubating in sea water at 18 C for 12 hr. RNA was isolated from embryos collected by low speed centrifugation by homogenization in 50mM Tris-HCl buffer pH 7.5, 50 mM NaCl, 10 mM EDTA, 0.5% SDS, digestion with proteinase K, phenol/chloroform extraction, and ethanol precipitation. RNA was reverse-transcribed (8 min at 30 C followed by 50 min at 42 C) using Invitrogen Superscript II reverse transcriptase and buffer components, and random-hexamer primers linked 3' to an arbitrary 25-mer anchor DNA sequence termed AN (5'-GAATTCTACCTCAGAGGAGTCATAT-3'). The resulting cDNA was amplified by SL-PCR using the 25-mer AN primer and a 23-mer SL primer (5'-GGATCCGATTCTATTTGAATAAG-3') whose last 16 bases correspond to the Ciona spliced leader (SL) sequence. Thermostable DNA polymerase and buffer components were from the Clontech Advantage 2 PCR Kit. Thermal cycling conditions were 94 C, 1 min; [94 C, 30 sec; 57 C, 30 sec; 68 C, 30sec] x 25 cycles ; 68 C 2 min. SL-PCR products were recovered from the reaction using the Qiagen QIAquick PCR Purification Kit, which is expected to recover DNA molecules $100 bp, and following ethanol precipitation separate aliquots were analyzed by ultra high-throughput 454 pyrosequencing using the 454/Roche GS-20 sequencer and by T/A cloning in the pGEM-T vector (Promega) to assess the product length distribution. T/A cloning product insert sizes were determined by PCR amplification with primers based on vector T7 and SP6 promoter sequences. Of 19 plasmids recovered, 4 had no (or undetectably short ,<50 bp) inserts and the remainder had inserts ranging from ~100 - 850 bp (median 350 bp, mode 500 bp, mean and standard deviation 403 ± 232 bp).

text: Ciona intestinalis

text: Generic sample from Ciona intestinalis


text: Oregon St Univ - Center for Genome Research & Biocomputing

text: live

text: Generic

characteristic: NCBI submission package

text: Three weeks old Columbia-0 plants were grown at 22*C in long-days (16:8 hrs. day/night; at light intensity 200 *mol m-2s-1). Rosette leaves, inflorescences, siliques, and roots were collected at time points 0 (dawn), 4, 8, 12, 16, (dusk), 20 and 24 hrs.

text: Arabidopsis thaliana

text: Generic sample from Arabidopsis thaliana


text: live

text: Generic

characteristic: SRA accession

text: Seedlings were grown on MS agar plates at 21*C in long-days (16:8 hrs. day/night; light intensity of 130 *mol m-2s-1). Whole 12 day old seedlings (including roots) were collected.

text: Arabidopsis thaliana


text: live

text: Generic

text: Seedlings were grown on MS agar plates at 21*C in long-days (16:8 hrs. day/night; light intensity of 130 *mol m-2s-1). The stress treatment initiated in the middle of the light cycle and continued for 24 hrs. Tissues (whole seedlings, including roots) from twelve day old seedlings were collected 1, 2, 5, 10 and 24 hrs. post stress induction. For the cold stress condition seedlings were exposed to 4*C.

characteristic: description

text: Arabidopsis thaliana


text: live

text: Generic

text: Seedlings were grown on MS agar plates at 21*C in long-days (16:8 hrs. day/night; light intensity of 130 *mol m-2s-1). The stress treatment initiated in the middle of the light cycle and continued for 24 hrs. Tissues (whole seedlings, including roots) from twelve day old seedlings were collected 1, 2, 5, 10 and 24 hrs. post stress induction. For the heat stress condition seedlings were exposed to 42*C.

text: Arabidopsis thaliana

characteristic: organism


text: live

text: Generic

text: Seedlings were grown on MS agar plates at 21*C in long-days (16:8 hrs. day/night; light intensity of 130 *mol m-2s-1). The stress treatment initiated in the middle of the light cycle and continued for 24 hrs. Tissues (whole seedlings, including roots) from twelve day old seedlings were collected 1, 2, 5, 10 and 24 hrs. post stress induction. For the salt stress condition seedlings were exposed to 0.5 M sodium chloride.

text: Arabidopsis thaliana

characteristic: title


text: live

text: Generic

text: Seedlings were grown on MS agar plates at 21*C in long-days (16:8 hrs. day/night; light intensity of 130 *mol m-2s-1). The stress treatment initiated in the middle of the light cycle and continued for 24 hrs. Tissues (whole seedlings, including roots) from twelve day old seedlings were collected 1, 2, 5, 10 and 24 hrs. post stress induction. For the drought stress condition seedlings were exposed to 25% polyethylene glycol (PEG 6000, Sigma-Aldrich).

text: Arabidopsis thaliana


text: live

text: Generic

text: Seedlings were grown on MS agar plates at 21*C in long-days (16:8 hrs. day/night; light intensity of 130 *mol m-2s-1). The stress treatment initiated in the middle of the light cycle and continued for 24 hrs. Tissues (whole seedlings, including roots) from twelve day old seedlings were collected 1, 2, 5, 10 and 24 hrs. post stress induction. For the heat stress condition seedlings were exposed to continuous light at 1000 *mol m-2s-1.

text: Arabidopsis thaliana


HMP026-454 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Propionibacterium is a genus of bacterium that are gram-positve and anaerobic. The bacterium inhabit the skin and are generally non-pathogenic but they can act as opportunistic pathogen.

text: Propionibacterium acidifaciens F0233

text: Generic sample from Propionibacterium acidifaciens F0233


characteristic: Chlorophyll

characteristic: Extracted chlorophyll

text: Marine Biological Laboratory

text: live

text: Generic

characteristic: Nitrite Nitrate

characteristic: Turbidity

characteristic: ammonium

characteristic: date

characteristic: depth

text: Mount Hope Bay Station 7, amplification of the V9 region using 1380 and 1389 forward primers and the 1510 reverse primer

characteristic: dissolved oxygen

characteristic: latitude

characteristic: longitude

text: marine metagenome

characteristic: ph

characteristic: phosphate

characteristic: salinity

characteristic: silicate

characteristic: temperature

characteristic: time

text: Generic sample from marine metagenome


SMP PAL_1_1E

characteristic: External Id

characteristic: Fluorescence

characteristic: Grid Station

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: Oxygen

characteristic: SRA accession

characteristic: depth end

characteristic: depth start

text: Samples collected during the annual Austral midsummer cruise (January-February, 2008) in the Palmer, Antarctica Long Term Ecological Research (PAL-LTER) study region along the western Antarctic Peninsula

characteristic: description

characteristic: leucine

text: marine metagenome

characteristic: organism

text: Generic sample from marine metagenome

characteristic: title


SMP PAL_1_2E

characteristic: External Id

characteristic: Fluorescence

text: Marine Biological Laboratory

text: live

text: Generic

characteristic: date

characteristic: latitude

characteristic: longitude

text: marine metagenome

characteristic: salinity

characteristic: temperature

text: Generic sample from marine metagenome


SMP PAL_2_1E

characteristic: Grid Station

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: marine metagenome

text: Generic sample from marine metagenome


SMP PAL_2_2E

text: Marine Biological Laboratory

text: live

text: Generic

characteristic: NCBI submission package

characteristic: Oxygen

characteristic: SRA accession

characteristic: depth end

characteristic: depth start

characteristic: description

text: marine metagenome

text: Generic sample from marine metagenome


characteristic: External Id

text: Genomic Medical Institute, Seoul National University

text: live

text: Generic

text: Korean adult male in his thirties, following the guidelines by the Institutional Review Board of Seoul National University (approval number C-0806-023-246). High molecular mass genomic DNA was extracted from sperm and peripheral blood using standard protocols

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens

characteristic: title


name: Anopheles funestus from field Kela (Mali) and FUMOZ-R (a lab pyrethroid resistant strain)

text: Liverpool School of Tropical Medicine

text: live

text: Generic

text: Total RNA was extracted from different life-stages of two strains of An. funestus, FUMOZ-R a laboratory strain resistant to pyrethroids and a field collected pyrethroid susceptible sample from Kela, a village in Mali.

text: Anopheles funestus

text: Generic sample from Anopheles funestus


Pichia pastoris GS115

text: Flanders Institute for Biotechnology (VIB), Ghent University (UGent)

text: live

text: Generic

text: The shotgun library of Pichia pastoris GS115 for sequencing on the Genome Sequencer FLX (GS FLX) was prepared from five micrograms of intact genomic DNA.

text: Komagataella phaffii GS115

text: Generic sample from Komagataella pastoris GS115


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Stackebrandtia nassauensis DSM 44728

text: Stackebrandtia nassauensis DSM 44728

text: DSM 44728

characteristic: strain

text: Generic sample from Stackebrandtia nassauensis DSM 44728

text: type strain of Stackebrandtia nassauensis

characteristic: type material


characteristic: INSDC center name

text: live

text: Generic

text: Brachybacterium faecium DSM 4810

text: Brachybacterium faecium DSM 4810

text: DSM 4810

text: Generic sample from Brachybacterium faecium DSM 4810

text: type strain of Brachybacterium faecium


characteristic: INSDC first public

text: live

text: Generic

text: Methanocaldococcus fervens AG86

text: Methanocaldococcus fervens AG86

text: Generic sample from Methanocaldococcus fervens AG86

text: type strain of Methanocaldococcus fervens


characteristic: INSDC last update

text: live

text: Generic

text: Rhodothermus marinus DSM 4252

text: Rhodothermus marinus DSM 4252

text: DSM 4252

text: Generic sample from Rhodothermus marinus DSM 4252

text: type strain of Rhodothermus marinus


name: MID barcoded hooded crow brain transcriptomes from 6 indiviudals

text: University of Uppsala

characteristic: INSDC secondary accession

text: live

text: Generic

text: barcoded samples from hindbrain of 6 carrion crow (corvus corone cornix) individuals from Ireland (round Belfast)

text: Corvus cornix

text: Generic sample from Corvus cornix


SMP PAL_3_1E

characteristic: Fluorescence

characteristic: Grid Station

text: Marine Biological Laboratory

text: live

characteristic: INSDC status

text: Generic

characteristic: date

characteristic: latitude

characteristic: leucine

characteristic: longitude

text: marine metagenome

characteristic: salinity

characteristic: temperature

text: Generic sample from marine metagenome


SMP PAL_3_2E

characteristic: External Id

text: Marine Biological Laboratory

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: Oxygen

characteristic: SRA accession

characteristic: depth end

characteristic: depth start

characteristic: description

text: marine metagenome

characteristic: organism

text: Generic sample from marine metagenome


SMP PAL_4_1E

characteristic: Fluorescence

characteristic: Grid Station

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: marine metagenome

text: Generic sample from marine metagenome

characteristic: title


SMP PAL_4_2E

text: Marine Biological Laboratory

text: live

characteristic: INSDC status

text: Generic

characteristic: date

characteristic: latitude

characteristic: longitude

text: marine metagenome

characteristic: salinity

characteristic: temperature

text: Generic sample from marine metagenome


SMP PAL_5_1E

characteristic: External Id

text: Marine Biological Laboratory

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: Oxygen

characteristic: SRA accession

characteristic: depth end

characteristic: leucine

text: marine metagenome

text: Generic sample from marine metagenome


SMP PAL_5_2E

characteristic: Fluorescence

characteristic: Grid Station

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: depth start

characteristic: description

text: marine metagenome

characteristic: organism

text: Generic sample from marine metagenome


SMP PAL_6_1E

text: Marine Biological Laboratory

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: date

characteristic: latitude

characteristic: longitude

text: marine metagenome

text: Generic sample from marine metagenome

characteristic: title


SMP PAL_6_2E

characteristic: External Id

text: Marine Biological Laboratory

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: Oxygen

characteristic: SRA accession

text: marine metagenome

characteristic: salinity

characteristic: temperature

text: Generic sample from marine metagenome


SMP PAL_7_1E

characteristic: Fluorescence

characteristic: Grid Station

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: depth end

characteristic: depth start

characteristic: leucine

text: marine metagenome

text: Generic sample from marine metagenome


SMP PAL_7_2E

text: Marine Biological Laboratory

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: date

characteristic: description

characteristic: latitude

text: marine metagenome

characteristic: organism

text: Generic sample from marine metagenome


SMP PAL_8_1E

characteristic: External Id

text: Marine Biological Laboratory

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: Oxygen

characteristic: SRA accession

characteristic: longitude

text: marine metagenome

text: Generic sample from marine metagenome

characteristic: title


SMP PAL_8_2E

characteristic: Fluorescence

characteristic: Grid Station

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: depth end

text: marine metagenome

characteristic: salinity

characteristic: temperature

text: Generic sample from marine metagenome


genomicDNA

text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: genomic E25DNA

characteristic: antibody

text: HeLa

characteristic: cell type

text: source: HeLa; description: genomic DNA control

characteristic: description

text: Homo sapiens

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: HeLa

text: source: HeLa; description: Chromatin IP

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: H2A.Z (high salt)

text: HeLa

text: source: HeLa; description: Chromatin IP

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


Double ChIP

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: HeLa

text: source: HeLa; description: Chromatin IP

text: Homo sapiens

text: Generic sample from Homo sapiens


input

text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: input (low-salt)

text: HeLa

text: source: HeLa; description: input control

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Thermoanaerobacter sp. X561

text: Thermoanaerobacter sp. X561

characteristic: strain

text: Generic sample from Thermoanaerobacter sp. X561


text: live

text: Generic

text: Staphylothermus hellenicus DSM 12710

text: Staphylothermus hellenicus DSM 12710

text: DSM 12710

text: Generic sample from Staphylothermus hellenicus DSM 12710

text: type strain of Staphylothermus hellenicus

characteristic: type material


text: Stanford University

text: live

text: Generic

text: Patient-0 whose genome was sequenced in Single Molecule Sequencing of an Individual Human Genome study.

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: Thiomonas intermedia K12

text: Thiomonas intermedia K12

text: Generic sample from Thiomonas intermedia K12


name: HPC-7_Scl_Chip-Seq (Scl_lane7 and Scl_lane8)

text: Gene Expression Omnibus

text: live

text: Generic

text: anti-Scl

text: Early haematopoietic cell line dervied from ES cells

text: source: HPC-7; description:

text: Mus musculus

text: Generic sample from Mus musculus


HPC-7_Scl_Chip-Seq (Scl_vancouver)

text: Gene Expression Omnibus

text: live

text: Generic

text: anti-Scl

text: source: HPC-7; description:

text: Mus musculus

text: Generic sample from Mus musculus


text: live

text: Generic

text: Desulfurivibrio alkaliphilus AHT2

text: Desulfurivibrio alkaliphilus AHT 2

text: AHT 2

text: Generic sample from Desulfurivibrio alkaliphilus AHT2

text: type strain of Desulfurivibrio alkaliphilus


S. cerevisiae DBY746

text: Helicos BioSciences Corporation

text: live

text: Generic

text: Genotype: MATalpha his3-delta1 leu2-3 leu2-112 ura3-52 trp1-289

text: Saccharomyces cerevisiae

text: Generic sample from Saccharomyces cerevisiae