Megajapyx sp.

text: Dept. of Evolutionary Biology (University of Vienna)

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Organism=Megajapyx sp.; Eukaryota Metazoa Arthropoda Hexapoda Diplura Japygoidea Japygidae Megajapyx

text: Japygidae

text: Megajapyx sp. Expressed Sequence Tag (EST)


MetaG-CF

status: PUBLIC

characteristic: External Id

text: Universite du Littoral Cote d'Opale

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: Polymicrobial infections are increasingly recognized as clinically important in cystic fibrosis (CF), which is a human autosomal recessive disease resulting in decreased clearance of mucus from the lungs with concomitant microbial pulmonary infections conducing to lung damage and death of patients. Here, we developed a pyrosequencing approach to extensively explore, for the first time, the diversity and dynamics of fungal and bacterial populations (microbiota) in CF lower airways. We clearly demonstrated that the diversity and microbial species richness were lower in patients with decreased lung function, and we interpreted our results to highlight the potential interactions between microorganisms and the role of fungi in the context of improving CF management. High-throughput sequencing, due to its potential for massive direct sequencing after a single run of DNA amplification and automation, appears to be the most promising approach to access the CF lung microbiota. The present study should stimulate a debate over the best way to combine new technology (deep-sequencing), ecological tools (to analyze community interactions), and clinically relevant information. A better knowledge of sputum microbiota would represent a major advance in our understanding of the disease, and has the potential to dramatically improve survival in CF patients.

characteristic: description

text: Bacteria

characteristic: organism

text: The airway microbiota in cystic fibrosis: a complex and dynamic biological community and implications for therapeutic management

characteristic: title


name: RNA-Seq of Liver for heat stess in catfish

text: Auburn University Fish Molecular Genetic

text: live

text: Generic

text: Ictalurus punctatus

text: RNA-Seq analysis for heat stress associated genes in catfish


text: UC Davis

text: live

text: Generic

text: mouse embryonic fibroblasts (MEF)

tag: attribute

characteristic: cell type

characteristic: chip antibody

text: wild-type

characteristic: genotype/variation

text: Mus musculus

text: passage 7, replicate 1

characteristic: passages

characteristic: strain


text: UC Davis

characteristic: INSDC secondary accession

text: live

text: Generic

text: mouse embryonic fibroblasts (MEF)

text: homozygously constitutively null for H3f3b

text: Mus musculus

text: passage 7, replicate 1


text: UC Davis

text: live

text: Generic

characteristic: NCBI submission model

text: mouse embryonic fibroblasts (MEF)

text: wild-type

text: Mus musculus

text: passage 7, replicate 2


text: UC Davis

text: live

text: Generic

characteristic: SRA accession

text: mouse embryonic fibroblasts (MEF)

text: Mus musculus

text: passage 7, replicate 2


58A 4C

characteristic: External Id

text: Texas A&M University

text: live

text: Generic

text: Sequences represent cDNA reverse transcribed from 16S rRNA gene transcripts. Total RNA was extracted from marine sediments collected from the Great Barrier Reef IODP Expedition 325 at the site Noggin Pass.

text: Bacteria incertae sedis

text: IODP Expedition 325 Great Barrier Reef sediment, Hole 58A, 4 degree C storage


58A -80oC

text: Texas A&M University

characteristic: INSDC center name

text: live

text: Generic

text: Bacteria incertae sedis

text: IODP Expedition 325 Great Barrier Reef sediment, Hole 58A, -80 degree C storage


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

characteristic: batch

text: James Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cells received from the James Thomson laboratory. Cells are from the H1 line and are differentiated into mesendoderm by treatment with BMP4.

text: H1 cells in E8 medium contatin 5ng/mL BMP4 and 25ng/mL Activin A for 2 days

characteristic: differentiation method

text: Embryonic stem cell differentiated into mesendoderm by treatment with BMP4

characteristic: differentiation stage

characteristic: line

text: Embryonic Stem Cell

characteristic: lineage

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Between 25 and 35

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: Replicate 1

text: Thomson Laboratory

text: Cell Line

text: H1-Mesenchymal Stem Cell Line, biological replicate 1 (r1)

characteristic: description

text: H1 cells were cultured on plates coated with fibronectin and human collagen

text: embryonic stem cell differentiated by treatment with fibronectin and human collagen

text: 50% StemLine II serum-free HSC expansion medium (HSFEM; Sigma), 50% ESFM, GlutaMAX (1/100 dilution), Ex-Cyte supplement (1/2000 dilution), 100 mM MTG, and 10 ng/ml FGF2.

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Replicate 2

characteristic: batch

text: Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

text: H1-Mesenchymal Stem Cell Line, biological replicate 2 (r2)

text: genomic DNA

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


text: Kansas State University

text: live

text: Generic

text: Plants were grown in greenhouse conditions under natural day light supplemented with artificial source of light. The total RNA was isolated from 4 week seedlings using the RNeasy Plant Mini Kit (QIAGEN). First-Strand cDNA synthesis was performed according SMART cDNA synthesis technology (Clontech Laboratories, Inc.) using 3' SMART CDS modified Primer II A primer (5'-AAG CAG TGG TAT CAA CGC AGA GTA CTT TTG T(9) C T(10) VN-3') and SuperScript III reverse transcriptase (Invitrogen). Double-stranded cDNA was amplified by long-distance (LD) PCR using Advantage 2 PCR Enzyme System (Clontech Laboratories, Inc). Amplification was performed on thermal cycler (Applied Biosystem) with the following PCR parameters: 95oC for 1min; 95oC-15sec, 65oC-30sec, 68oC-6min - 16 cycles; 4oC- 45 min (optional). Double-stranded cDNA was checked on the 1.1% agarose/EtBr gel in 1XTAE buffer and purified with QIAquick PCR Purification Kit (QIAGEN). The double-stranded cDNA was normalized using TRIMMER cDNA normalization Kit (EVROGEN), which is based on a unique DSN (duplex-specific nuclease) normalization technology and is specially developed for normalization of cDNA enriched with full-length sequences.

text: Triticum aestivum

text: Triticum aestivum CAP7


text: Kansas State University

text: live

text: Generic

text: Triticum aestivum

text: Triticum aestivum CAP8


text: Kansas State University

text: live

text: Generic

text: Triticum aestivum

text: Triticum aestivum CAP11


text: Kansas State University

text: live

text: Generic

text: Triticum aestivum

text: Triticum aestivum CAP12


text: Kansas State University

text: live

text: Generic

text: Triticum aestivum

text: Triticum aestivum RAC875


Kukri

text: Kansas State University

text: live

text: Generic

text: Triticum aestivum

text: Triticum aestivum Kukri


Excalibur

text: Kansas State University

text: live

text: Generic

text: Triticum aestivum

text: Triticum aestivum Excalibur


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

text: RespiratoryChainDisease

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Lymphoblastoid cell line

characteristic: body site

text: GRU

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

text: Case-Control

characteristic: study design

text: Mitochondrial Diseases

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

text: RespiratoryChainDisease

characteristic: submitter handle

text: DNA sample from Lymphoblastoid cell line of a human female participant in the dbGaP study MitoExome Sequencing of Mitochondrial OXPHOS Diseases (MGH)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: DNA

text: RespiratoryChainDisease

text: Lymphoblastoid cell line

text: GRU

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Case-Control

text: Mitochondrial Diseases

text: MitoExome Sequencing of Mitochondrial OXPHOS Diseases (MGH)

text: Yes

text: RespiratoryChainDisease

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: RespiratoryChainDisease

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Fresh blood

characteristic: body site

text: GRU

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

text: Case-Control

characteristic: study design

text: Mitochondrial Diseases

text: Yes

text: RespiratoryChainDisease

text: DNA sample from Fresh blood of a human female participant in the dbGaP study MitoExome Sequencing of Mitochondrial OXPHOS Diseases (MGH)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: RespiratoryChainDisease

text: Lymphoblastoid cell line

text: GRU

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Case-Control

text: Mitochondrial Diseases

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

text: RespiratoryChainDisease

characteristic: submitter handle

text: DNA sample from Lymphoblastoid cell line of a human male participant in the dbGaP study MitoExome Sequencing of Mitochondrial OXPHOS Diseases (MGH)


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: DNA

text: RespiratoryChainDisease

text: Fresh blood

text: GRU

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Case-Control

text: Mitochondrial Diseases

text: Yes

text: RespiratoryChainDisease

text: DNA sample from Fresh blood of a human male participant in the dbGaP study MitoExome Sequencing of Mitochondrial OXPHOS Diseases (MGH)

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: RespiratoryChainDisease

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Fresh blood

characteristic: body site

text: GRU

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: male

text: Case-Control

characteristic: study design

text: RespiratoryChainDisease


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: RespiratoryChainDisease

text: Fresh blood

text: GRU

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Case-Control

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: RespiratoryChainDisease

characteristic: submitter handle


text: CIB-CAS,China

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: fourth fully expanded and intact young leaves near the shoot apex of each plant

characteristic: development stage

text: Populus yunnanensis

characteristic: organism

text: male

text: leaf, male, no salinity stress

text: leaf

characteristic: tissue

text: Populus yunnanensis, males without salinity stress, leaves


text: CIB-CAS,China

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Populus yunnanensis

text: male

characteristic: sex

text: leaf, male, salinity stress

text: leaf

text: Populus yunnanensis, males exposed to salinity stress, leaves

characteristic: title

text: salinity stress

characteristic: treatment


characteristic: External Id

text: CIB-CAS,China

characteristic: INSDC center name

text: live

text: Generic

text: Populus yunnanensis

text: female

text: leaf, female, no salinity stress

text: leaf

text: Populus yunnanensis, females without salinity stress, leaves


text: CIB-CAS,China

text: live

text: Generic

text: Populus yunnanensis

text: female

text: leaf, female, salinity stress

text: leaf

text: Populus yunnanensis, females exposed to salinity stress, leaves

text: salinity stress


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Brevibacterium sp. di309

characteristic: description

text: Brevibacterium sp. di309

characteristic: sample number

characteristic: strain

text: Generic sample from Brevibacterium sp. di309


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Enterobacter cloacae SCF1

text: [Enterobacter] lignolyticus SCF1

text: Generic sample from Enterobacter cloacae SCF1


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Escherichia coli MG1655

text: Generic sample from Escherichia coli str. K-12 substr. MG1655


text: live

text: Generic

characteristic: NCBI submission package

text: Escherichia coli MG1655

text: Escherichia coli str. K-12 substr. MG1655


text: live

text: Generic

text: Phycomyces blakesleeanus B2

text: Phycomyces blakesleeanus B2

characteristic: organism

text: Generic sample from Phycomyces blakesleeanus B2


text: live

text: Generic

text: Escherichia coli K-12


text: live

text: Generic

text: Clostridium thermocellum ATCC 27405

text: Acetivibrio thermocellus ATCC 27405

text: ATCC 27405

text: Generic sample from Clostridium thermocellum ATCC 27405

text: type strain of Clostridium thermocellum

characteristic: type material


text: live

text: Generic

characteristic: NCBI submission model

text: Thermus thermophilus JL-18

text: Thermus thermophilus JL-18

text: Generic sample from Thermus thermophilus JL-18


text: live

text: Generic

characteristic: SRA accession

text: Generic sample from Thermoanaerobacterium thermosaccharolyticum M0795


text: live

text: Generic

text: Aquiflexum balticum DSM 16537

text: Aquiflexum balticum DSM 16537

text: DSM 16537

text: Generic sample from Aquiflexum balticum DSM 16537


EVASOL

text: Centre National de la Recherche Scientifique - Information Genomique et Structurale

text: live

text: Generic

text: No industrial activity and no specific geographical location can be disclosed for the four sites studied due to confidentiality reasons. At each site (B, F, G and H), groundwater samples were collected by SITA Remediation Company (Lyon, France) from the monitoring wells drilled in the deep aquifer i.e. between -20 and -30 m depth for the site B, -7 and -12 m for the site F, -7 and -10 m for the site G and -3 and -6 m for the site H. Genomic DNA (gDNA) was extracted from all groundwater samples according to the experimental protocol described by Dugat-Bony et al. (2011).

text: groundwater metagenome

text: 16S rDNA amplicon sequencing


text: Glass Lab, Plant and Microbial Biology, UC Berkeley

text: live

text: Generic

text: Avicel

characteristic: carbon source

text: NCU07705 open reading frame replaced with hygromycin resistance cassette

characteristic: genotype/variation

text: Neurospora crassa OR74A

text: FGSC 11029

text: 1 hour

characteristic: time after media shift


characteristic: External Id

text: live

text: Generic

text: Avicel

text: Neurospora crassa OR74A

text: FGSC 11029

text: 4 hours

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: Sucrose

text: Neurospora crassa OR74A

text: FGSC 11029

text: 1 hour


text: live

text: Generic

text: Sucrose

text: Neurospora crassa OR74A

text: FGSC 11029

text: 4 hours


text: live

text: Generic

text: Avicel

text: NCU08042 open reading frame replaced with hygromycin resistance cassette

text: Neurospora crassa OR74A

text: FGSC 15835

text: 1 hour


text: live

text: Generic

text: Avicel

text: Neurospora crassa OR74A

text: FGSC 15835

text: 4 hours


text: live

text: Generic

text: Sucrose

text: Neurospora crassa OR74A

text: FGSC 15835

text: 1 hour


text: live

text: Generic

text: Sucrose

text: Neurospora crassa OR74A

text: FGSC 15835

text: 4 hours


text: live

text: Generic

text: Avicel

text: Wild Type

text: Neurospora crassa OR74A

text: FGSC 2489

text: 1 hour


text: live

text: Generic

text: Avicel

text: Wild Type

text: Neurospora crassa OR74A

text: FGSC 2489

text: 2 hours


text: live

text: Generic

text: Avicel

text: Wild Type

text: Neurospora crassa OR74A

text: FGSC 2489

text: 30 minutes


text: live

text: Generic

text: Avicel

text: Wild Type

text: Neurospora crassa OR74A

text: FGSC 2489

text: 4 hours


text: live

text: Generic

text: No Carbon

text: Wild Type

text: Neurospora crassa OR74A

text: FGSC 2489

text: 1 hours


text: live

text: Generic

text: No Carbon

text: Wild Type

text: Neurospora crassa OR74A

text: FGSC 2489

text: 4 hours


text: live

text: Generic

text: Sucrose

text: Wild Type

text: Neurospora crassa OR74A

text: FGSC 2489

text: 1 hour


text: live

text: Generic

text: Sucrose

text: Wild Type

text: Neurospora crassa OR74A

text: FGSC 2489

text: 4 hours


Thermobia domestica

text: Zoologisches Forschungsmuseum A. Koenig

text: live

text: Generic

text: Organism=Thermobia domestica; Eukaryota Metazoa Arthropoda Hexapoda Zygentoma Lepismatidae Thermobia

characteristic: description

text: Thermobia domestica

text: Thermobia domestica Expressed Sequence Tag (EST)


text: Geoffrey Pope 309, Biosciences, University of Exeter

text: live

text: Generic

text: Yeast

characteristic: cell type

text: OD (600 nm) = 1

characteristic: growth stage

text: Candida albicans

text: Yeast cells, wild-type

characteristic: strain

text: Total RNA from Candida albicans wild-type strain (SC5314) yeast cells Replicate 1


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Yeast

text: OD (600 nm) = 1

text: Candida albicans

text: Yeast cells, wild-type

text: Total RNA from Candida albicans wild-type strain (SC5314) yeast cells Replicate 2


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: Yeast

text: OD (600 nm) = 1

text: Candida albicans

characteristic: organism

text: Yeast cells, wild-type

text: Total RNA from Candida albicans wild-type strain (SC5314) yeast cells Replicate 3


text: Oak Ridge National Laboratory

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Clostridium thermocellum wild-type strain YS is an anaerobic, thermophilic, cellulolytic bacterium capable of directly converting cellulosic substrates into ethanol. Strain YS and a derived cellulose adherence defective mutant strain AD2 played pivotal roles in describing the original cellulosome concept.

text: Acetivibrio thermocellus YS

text: YS

text: Clostridium thermocellum Wild-Type Strain YS and Derived Cellulose Adherence Defective Mutant Strain AD2


text: Ian D. Hickson lab, Nordea Centre for Healthy Aging, Faculty Of Health Sciences Department of Cellular and Molecular Medicine, University of Copenhagen

text: live

text: Generic

text: Homo sapiens

text: Human Cerebellum total RNA

text: Cerebellum

characteristic: tissue


text: University of Michigan

text: live

text: Generic

text: Microbial Communities in deep-sea hydrothermal vent plumes in the Guaymas Basin.

text: hydrothermal vent metagenome

text: Guaymas Hydrothermal vent Plume microbial community


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Helicobacter pylori CPY1124

text: Helicobacter pylori CPY1124


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: unidentified

text: 454-249 Listeria monocytogenes

characteristic: sample name

text: Generic sample from unidentified


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-240 Listeria monocytogenes

text: Generic sample from unidentified

characteristic: title


PRJNA77009.454-200 454 Development

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: unidentified

text: 454-200 454 Development

text: Generic sample from unidentified


text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-246 Listeria monocytogenes

text: Generic sample from unidentified


text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-242 Listeria monocytogenes

text: Generic sample from unidentified


PRJNA77009.454-201 454 Development

text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-201 454 Development

text: Generic sample from unidentified


text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-243 Listeria monocytogenes

text: Generic sample from unidentified


text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-247 Listeria monocytogenes

text: Generic sample from unidentified


text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-236 Listeria monocytogenes

text: Generic sample from unidentified


text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-235 Listeria monocytogenes

text: Generic sample from unidentified


text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-245 Listeria monocytogenes

text: Generic sample from unidentified


text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-248 Listeria monocytogenes

text: Generic sample from unidentified


text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-239 Listeria monocytogenes

text: Generic sample from unidentified


text: Broad Institute

text: live

text: Generic

text: Generic

text: unidentified

text: 454-241 Listeria monocytogenes

text: Generic sample from unidentified


text: Department of Biochemistry, Boston University School of Medicine

text: live

text: Generic

characteristic: cell type

text: Homo sapiens

text: 293T cells

text: siRNA transfection with 5nM siCTL

characteristic: treatment


text: live

text: Generic

text: Homo sapiens

text: 293T cells

text: siRNA transfection with 5nM siGPS2


eMFC always off anode

text: Harvard University

text: live

text: Generic

text: marine sediment metagenome

text: Always OFF anode


eMFC always on anode

text: Harvard University

text: live

text: Generic

text: marine sediment metagenome

text: Always ON anode


text: Neotoma bryanti

characteristic: Host Species

text: University of Utah

text: live

text: Generic

characteristic: animal number

text: Generic

text: 16S inventories from the foregut of a Bryant's woodrat (Neotoma bryanti) that is evolutionary experienced to the plant defense compounds of creosote bush (Larrea tridentata), feeding on control diet.

characteristic: description

text: Control

characteristic: diet

text: Experienced

characteristic: evolutionary experience

text: gut metagenome

text: Animal 304 Exper Neotoma bryanti fed control diet


text: University of Utah

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: 16S inventories from the foregut of a Bryant's woodrat (Neotoma bryanti) that is evolutionary experienced with the plant defense compounds of creosote bush (Larrea tridentata), feeding on control diet.

text: gut metagenome

text: Animal 307 Exper Neotoma bryanti fed control diet


eMFC short off anode

text: Harvard University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: This anode was duty-cycled with 1.8 seconds ON and 0.6 settings OFF settings.

text: marine sediment metagenome

characteristic: organism

text: Short OFF anode


characteristic: External Id

text: Neotoma bryanti

text: University of Utah

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Control

text: Experienced

text: gut metagenome

text: Animal 308 Exper Neotoma bryanti fed control diet

characteristic: title


eMFC long off anode

text: Harvard University

characteristic: INSDC center name

text: live

text: Generic

text: This anode was duty cycled 1.8s ON 41.4s OFF.

text: marine sediment metagenome

text: Long OFF anode


name: Low-sediment stream (K13) 32d Sample 292

text: Auburn University

text: live

text: Generic

text: freshwater sediment metagenome

text: Bacterial assemblage composition within red maple leaf litter following 32 days instream incubation


eMFC outside sediment

text: Harvard University

text: live

text: Generic

text: marine sediment metagenome

text: Sediment


name: Low-sediment stream (K13) 32d Sample 295

text: Auburn University

text: live

text: Generic

text: freshwater sediment metagenome


eMFC chamber biofilms

text: Harvard University

text: live

text: Generic

text: The biofilm inside the chamber was sampled to compare with the communities on the anodes.

text: marine sediment metagenome

text: Chamber biofilm


name: Low-sediment stream (K11E) 32d Sample 241

text: Auburn University

text: live

text: Generic

text: freshwater sediment metagenome


name: High-sediment stream (D6) 32d Sample 277

text: Auburn University

text: live

text: Generic

text: freshwater sediment metagenome

text: Bacterial assemblage composition within red maple leaf litter following 32 days incubation in a high-sediment disturbance stream


name: High-sediment stream (D6) 32d Sample 276

text: Auburn University

text: live

text: Generic

text: freshwater sediment metagenome


name: Low-sediment stream (K13) 64d Sample 352

text: Auburn University

text: live

text: Generic

text: freshwater sediment metagenome

text: Bacterial assemblage composition within red maple leaf litter following 64 days instream incubation


text: Neotoma bryanti

characteristic: Host Species

text: University of Utah

text: live

text: Generic

text: Generic

text: 16S inventories from the foregut of a Bryant's woodrat (Neotoma bryanti) that is evolutionary experienced to the plant defense compounds of creosote bush (Larrea tridentata), feeding on creosote diet.

text: Creosote

text: Experienced

text: gut metagenome

text: Animal 309 Exper Neotoma bryanti fed creosote diet


name: Low-sediment stream (K13) 64d Sample 354

text: Auburn University

text: live

text: Generic

text: freshwater sediment metagenome


name: High-sediment stream (F1W) 64d Sample 374

text: Auburn University

text: live

text: Generic

text: freshwater sediment metagenome

text: Bacterial assemblage composition within red maple leaf litter following 64 days incubation in a high-sediment disturbance stream


name: High-sediment stream (D6) 64d Sample 389

text: Auburn University

text: live

text: Generic

text: freshwater sediment metagenome


text: Neotoma bryanti

text: University of Utah

text: live

text: Generic

characteristic: animal number

text: Generic

text: Creosote

text: Experienced

text: gut metagenome

text: Animal 310 Exper Neotoma bryanti fed creosote diet


name: High-sediment stream (F1W) 32d Sample 316

text: Auburn University

text: live

text: Generic

text: freshwater sediment metagenome


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Helicobacter pylori CPY1313

characteristic: strain

text: Helicobacter pylori CPY1313


text: Experienced

characteristic: Evolutionary History

text: Neotoma bryanti

text: University of Utah

text: live

text: Generic

text: Generic

characteristic: description

text: Control

characteristic: diet

text: gut metagenome

text: Animal 318 Exper Neotoma bryanti fed control diet


text: Neotoma bryanti

text: University of Utah

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Creosote

text: Experienced

characteristic: evolutionary experience

text: gut metagenome

text: Animal 321 Exper Neotoma bryanti fed creosote diet


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: Helicobacter pylori CPY1962

text: Helicobacter pylori CPY1962


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Generic

text: Listeria monocytogenes FSL F2-515

characteristic: organism

characteristic: sample name

text: FSL F2-515

text: Generic sample from Listeria monocytogenes FSL F2-515


characteristic: External Id

text: Neotoma lepida

text: University of Utah

characteristic: INSDC center name

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: 16S inventories from the foregut of a Desert woodrat (Neotoma lepida) that is evolutionary naive to the plant defense compounds of creosote bush (Larrea tridentata), feeding on creosote diet.

text: Creosote

text: Naive

text: gut metagenome

text: Animal 521 Naive Neotoma lepida fed creosote diet

characteristic: title


text: live

text: Generic

text: Helicobacter pylori CPY3281

characteristic: strain

text: Helicobacter pylori CPY3281


text: Neotoma lepida

characteristic: Host Species

text: University of Utah

text: live

text: Generic

characteristic: animal number

text: Generic

characteristic: description

text: Creosote

text: Naive

text: gut metagenome

text: Animal 523 Naive Neotoma lepida fed creosote diet


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Helicobacter pylori CPY6081

text: Helicobacter pylori CPY6081


text: Neotoma lepida

text: University of Utah

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Creosote

characteristic: diet

text: Naive

characteristic: evolutionary experience

text: gut metagenome

text: Animal 524 Naive Neotoma lepida fed creosote diet


text: Neotoma lepida

text: University of Utah

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: 16S inventories from the foregut of a Desert woodrat (Neotoma lepida) that is evolutionary naive to the plant defense compounds of creosote bush (Larrea tridentata), feeding on control diet.

text: Control

text: Naive

text: gut metagenome

text: Animal 525 Naive Neotoma lepida fed control diet


text: live

text: Generic

characteristic: SRA accession

text: Helicobacter pylori CPY6261

characteristic: organism

text: Helicobacter pylori CPY6261


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: GRU

text: Blood

characteristic: histological type

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

characteristic: study design

text: Hypertension

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from a human female participant in the dbGaP study Drug Resistant Hypertension in African Americans' Exome


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: GRU

text: Blood

text: SNP Genotypes (NGS)

text: Homo sapiens

text: male

text: Case-Control

text: Hypertension

text: Yes

text: DNA sample from a human male participant in the dbGaP study Drug Resistant Hypertension in African Americans' Exome

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: GRU

text: Blood

characteristic: histological type

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: female

text: Case-Control

text: Hypertension

text: Drug Resistant Hypertension in African Americans' Exome

text: Yes


text: dbGaP

text: live

text: Generic

text: DNA

text: GRU

text: Blood

text: SNP Genotypes (NGS)

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

characteristic: study design

text: Hypertension

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


text: Kazusa DNA Research Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: cultivar

text: Arachis hypogaea

text: Arachis hypogaea cultivar YI-0311 library

characteristic: title


characteristic: External Id

text: Kazusa DNA Research Institute

characteristic: INSDC center name

text: live

text: Generic

text: Kintoki

text: Arachis hypogaea

text: Arachis hypogaea cultivar Kintoki library


text: Kazusa DNA Research Institute

text: live

text: Generic

text: Nakateyutaka

text: Arachis hypogaea

characteristic: organism

text: Arachis hypogaea cultivar Nakateyutaka library


text: Neotoma lepida

characteristic: Host Species

text: University of Utah

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: animal number

text: Generic

characteristic: biosamplemodel

characteristic: description

text: Control

characteristic: diet

text: Naive

characteristic: evolutionary experience

text: gut metagenome

text: Animal 526 Naive Neotoma lepida fed control diet


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Helicobacter pylori CPY6271

characteristic: strain

text: Helicobacter pylori CPY6271


text: University of Utah

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: gut metagenome

text: Animal 525 Naive Neotoma lepida fed creosote diet


text: Naive

characteristic: Evolutionary History

characteristic: External Id

text: Neotoma lepida

text: University of Utah

text: live

text: Generic

text: Generic

text: Control

text: gut metagenome

text: Animal 534 Naive Neotoma lepida fed control diet

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: Helicobacter pylori CPY6311

characteristic: organism

text: Helicobacter pylori CPY6311


text: Neotoma lepida

characteristic: Host Species

text: University of Utah

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Control

text: Naive

text: gut metagenome

text: Animal 536 Naive Neotoma lepida fed control diet


text: Neotoma lepida

text: University of Utah

text: live

text: Generic

characteristic: animal number

text: Generic

characteristic: biosamplemodel

text: 16S inventories from the foregut of a Desert woodrat (Neotoma lepida) that is evolutionary experienced with the plant defense compounds of creosote bush (Larrea tridentata), feeding on creosote diet.

characteristic: description

text: Creosote

text: Experienced

text: gut metagenome

text: Animal 539 Exper Neotoma lepida fed creosote diet


text: Neotoma lepida

text: University of Utah

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Creosote

characteristic: diet

text: Experienced

characteristic: evolutionary experience

text: gut metagenome

text: Animal 543 Exper Neotoma lepida fed creosote diet


text: Neotoma lepida

text: University of Utah

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: 16S inventories from the foregut of a Desert woodrat (Neotoma lepida) that is evolutionary experienced with the plant defense compounds of creosote bush (Larrea tridentata), feeding on control diet.

text: Control

text: Experienced

text: gut metagenome

text: Animal 546 Exper Neotoma lepida fed control diet


text: Neotoma lepida

text: University of Utah

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: Control

text: Experienced

text: gut metagenome

text: Animal 548 Exper Neotoma lepida fed control diet


characteristic: External Id

text: Neotoma lepida

text: University of Utah

text: live

text: Generic

text: Generic

text: Creosote

text: Experienced

text: gut metagenome

text: Animal 549 Exper Neotoma lepida fed creosote diet


text: Neotoma lepida

text: University of Utah

text: live

text: Generic

text: Generic

text: Creosote

text: Experienced

text: gut metagenome

text: Animal 563 Exper Neotoma lepida fed creosote diet

characteristic: title


text: Neotoma lepida

text: University of Utah

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Control

text: Experienced

text: gut metagenome

text: Animal 566 Exper Neotoma lepida fed control diet


text: Neotoma lepida

text: University of Utah

text: live

text: Generic

text: Generic

text: Control

text: Experienced

text: gut metagenome

characteristic: organism

text: Animal 568 Exper Neotoma lepida fed control diet


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Populus deltoides

text: Populus deltoides

characteristic: sample number

text: Generic sample from Populus deltoides


characteristic: INSDC secondary accession

text: live

text: Generic

text: Helicobacter pylori NQ4044

characteristic: strain

text: Helicobacter pylori NQ4044


text: live

text: Generic

characteristic: SRA accession

text: Helicobacter pylori NQ4053

text: Helicobacter pylori NQ4053


text: live

text: Generic

text: Helicobacter pylori NQ4076

text: Helicobacter pylori NQ4076


text: live

text: Generic

text: Helicobacter pylori NQ4099

text: Helicobacter pylori NQ4099


text: live

text: Generic

text: Helicobacter pylori NQ4110

text: Helicobacter pylori NQ4110


text: live

text: Generic

text: Helicobacter pylori NQ4161

text: Helicobacter pylori NQ4161


text: live

text: Generic

text: Helicobacter pylori NQ4200

text: Helicobacter pylori NQ4200


text: live

text: Generic

text: Helicobacter pylori NQ4216

text: Helicobacter pylori NQ4216


text: live

text: Generic

text: Helicobacter pylori NQ4228

text: Helicobacter pylori NQ4228


D. albomicans male

text: University of California, Berkeley

text: live

text: Generic

text: An iso-female line was collected and established from Kunming, China in 2007. We collected male and female virgins of this line upon enclosure and then aged them separately for a week until their maturation.

text: Drosophila albomicans

text: D. albomicans male transcriptome


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Homo sapiens

characteristic: sample name

text: Generic sample from Homo sapiens


D. albomicans female

text: University of California, Berkeley

characteristic: INSDC first public

text: live

text: Generic

characteristic: description

text: Drosophila albomicans

text: D. albomicans female transcriptome


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

text: Geneva

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: OH

text: SNP Genotypes (imputed)

characteristic: molecular data type

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: Geneva

characteristic: submitter handle

text: DNA sample from a human female participant in the dbGaP study CCDG: Dental Caries and CL/P in Guatemala


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: Geneva

text: OH

text: SNP Genotypes (imputed)

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: female

text: Case-Control

text: CCDG: Dental Caries and CL/P in Guatemala

text: Geneva

characteristic: title


text: dbGaP

characteristic: INSDC first public

text: live

text: Generic

text: DNA

characteristic: analyte type

text: Geneva

characteristic: biospecimen repository

text: OH

text: SNP Genotypes (imputed)

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Case-Control

text: Geneva

text: DNA sample from a human male participant in the dbGaP study CCDG: Dental Caries and CL/P in Guatemala


text: dbGaP

text: live

text: Generic

text: DNA

text: Geneva

characteristic: biospecimen repository sample id

text: OH

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

text: Geneva


text: dbGaP

text: live

text: Generic

text: DNA

text: Geneva

text: OH

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Case-Control

characteristic: study design

characteristic: study name

characteristic: submitted sample id

text: Geneva


D.nasuta male

characteristic: External Id

text: University of California, Berkeley

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Iso-female line orderred from San Diego Drosophila species stock center, stock number 15112_1781.00, orignally from India.

characteristic: description

text: Drosophila nasuta

text: D. nasuta male virgins


D. nasuta female

text: University of California, Berkeley

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Drosophila nasuta

text: D. nasuta virgin females


RS Project

text: University of California at Davis

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: gut microbiota of aged mice receiving different diets (V1 to V3 regions of the 16SrRNA genes from gDNA extracted from cecum contents)

text: mouse gut metagenome

characteristic: organism

text: RS Project

characteristic: title


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Escherichia phage T7

characteristic: sample name

text: Generic sample from Enterobacteria phage T7


text: CIBIO

text: live

text: Generic

text: Oryctolagus cuniculus algirus

text: 5661 - O. c. algirus


text: CIBIO

text: live

text: Generic

text: Oryctolagus cuniculus algirus

text: 6546- O. c. algirus


text: CIBIO

text: live

text: Generic

text: Oryctolagus cuniculus algirus

text: 6798 - O. c. algirus


text: CIBIO

text: live

text: Generic

text: Oryctolagus cuniculus algirus

text: 7140 - O. c. algirus


text: CIBIO

text: live

text: Generic

text: Oryctolagus cuniculus algirus

text: 7435 - O. c. algirus


text: CIBIO

text: live

text: Generic

text: Oryctolagus cuniculus algirus

text: 7613 - O. c. algirus


text: live

text: Generic

text: Jiangella gansuensis DSM 44835

text: Jiangella gansuensis DSM 44835

text: DSM 44835

characteristic: strain

text: Jiangella gansuensis DSM 44835


text: live

text: Generic

text: Chloroflexus sp. Y-396-1

text: Chloroflexus sp. Y-396-1

text: Generic sample from Chloroflexus sp. Y-396-1


text: live

text: Generic

text: Barnesiella viscericola DSM 18177

text: Barnesiella viscericola DSM 18177

text: DSM 18177

text: Generic sample from Barnesiella viscericola DSM 18177


text: live

text: Generic

text: Belliella baltica DSM 15883

text: Belliella baltica DSM 15883

text: DSM 15883

text: Generic sample from Belliella baltica DSM 15883


text: live

text: Generic

text: Beggiatoa alba B18LD

text: Beggiatoa alba B18LD

text: Generic sample from Beggiatoa alba B18LD


text: Laboratoire de Biométrie et Biologie Évolutive., CNRS

text: live

text: Generic

text: Hepatocytes isolated from adult liver

characteristic: cell type

text: Cross-linked and sonicated chromatin

characteristic: chip

text: Mus musculus

text: Transgenic Hepatocytes

text: D6 after 1x1.5mg IP Tamoxifen

characteristic: tamoxifen protocol

text: Betacat activated sonoseq

text: Apclox/lox;TTR-CreERT

characteristic: transgenic line


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: antibody catalog

characteristic: antibody lot

text: BD Transduction Laboratories

characteristic: antibody manufacturer

text: Hepatocytes isolated from adult liver

text: beta-catenin (mouse monoclonal, clone 14)

characteristic: chip antibody

text: Mus musculus

text: Transgenic Hepatocytes

text: D6 after 1x1.5mg IP Tamoxifen

text: Betacat activated Betacat chipseq

text: Apclox/lox;TTR-CreERT


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Millipore Upstate

text: Hepatocytes isolated from adult liver

text: Tcf4 (mouse monoclonal, clone 6H5-3)

text: Mus musculus

text: Transgenic Hepatocytes

text: D6 after 1x1.5mg IP Tamoxifen

text: Betacat activated Tcf4 chipseq

text: Apclox/lox;TTR-CreERT


text: live

text: Generic

text: Hepatocytes isolated from adult liver

characteristic: cell type

text: Cross-linked and sonicated chromatin

text: Mus musculus

characteristic: organism

text: Transgenic Hepatocytes

characteristic: strain

text: D21 after 3x1.5mg IP Tamoxifen

text: Betacat null sonoseq

characteristic: title

text: Bcatlox/lox;TTR-CreERT


characteristic: External Id

text: live

text: Generic

text: Hepatocytes isolated from adult liver

text: ChIP/ antibody against Tcf4

characteristic: chip

text: Mus musculus

text: Transgenic Hepatocytes

text: D21 after 3x1.5mg IP Tamoxifen

characteristic: tamoxifen protocol

text: Betacat null Tcf4 chipseq

text: Bcatlox/lox;TTR-CreERT

characteristic: transgenic line


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Hepatocytes isolated from adult liver

text: Mus musculus

text: Transgenic Hepatocytes

text: D6 after 1x1.5mg IP Tamoxifen

text: Betacat activated mRNAseq 1

text: Apclox/lox;TTR-CreERT


text: live

text: Generic

text: Hepatocytes isolated from adult liver

text: Mus musculus

text: Transgenic Hepatocytes

text: D6 after 1x1.5mg IP Tamoxifen

text: Betacat activated mRNAseq 2

text: Apclox/lox;TTR-CreERT


text: live

text: Generic

text: Hepatocytes isolated from adult liver

text: Mus musculus

text: Transgenic Hepatocytes

text: D6 after 1x1.5mg IP Tamoxifen

text: Betacat control mRNAseq 1

text: Apclox/lox


text: live

text: Generic

text: Hepatocytes isolated from adult liver

text: Mus musculus

text: Transgenic Hepatocytes

text: D21 after 3x1.5mg IP Tamoxifen

text: Betacat control mRNAseq 2

text: Bcatlox/lox


text: live

text: Generic

text: Hepatocytes isolated from adult liver

text: Mus musculus

text: Transgenic Hepatocytes

text: D21 after 3x1.5mg IP Tamoxifen

text: Betacat null mRNAseq 1

text: Bcatlox/lox;TTR-CreERT


text: live

text: Generic

text: Hepatocytes isolated from adult liver

text: Mus musculus

text: Transgenic Hepatocytes

text: D21 after 3x1.5mg IP Tamoxifen

text: Betacat null mRNAseq 2

text: Bcatlox/lox;TTR-CreERT


text: live

text: Generic

text: Hepatocytes isolated from adult liver

text: Mus musculus

text: Transgenic Hepatocytes

text: no injection

text: WT mRNAseq 1

text: Apclox/lox


text: live

text: Generic

text: Hepatocytes isolated from adult liver

text: Mus musculus

text: Transgenic Hepatocytes

text: no injection

text: WT mRNAseq 2

text: Apclox/lox


text: University of Maryland

text: live

text: Generic

text: Polarella glacialis

text: Raw RNAseq Illumina data


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Helicobacter pylori Hp P-4

text: Hp P-4

text: Helicobacter pylori Hp P-4


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: batch

text: James Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cells received from the James Thomson laboratory. Cells are from the H1 line and are differentiated into mesendoderm by treatment with BMP4.

characteristic: description

text: H1 cells in E8 medium contatin 5ng/mL BMP4 and 25ng/mL Activin A for 2 days

characteristic: differentiation method

text: Embryonic stem cell differentiated into mesendoderm by treatment with BMP4

characteristic: differentiation stage

characteristic: line

text: Embryonic Stem Cell

characteristic: lineage

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: James Thomson Laboratory

text: Cell Line

text: Human embryonic stem cells received from the James Thomson laboratory. Cells are from the H1 line and are differentiated into trophoblast by treatment with BMP4.

text: H1 cells were cultured in mTeSR1 medium without bFGF containing 50ng/mL BMP4 for 5 days

text: Embryonic stem cell differentiated into trophoblast by treatment with BMP4

text: Embryonic Stem Cell

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

text: Generic sample from Homo sapiens

characteristic: title


text: Department of Molecular Biology (274), Radboud University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: antibody FLI1 (Abcam, Ab15289)

characteristic: antibody

text: Homo sapiens

text: no

characteristic: treatment


text: live

text: Generic

text: antibody FLI1 (Abcam, Ab15289)

text: Homo sapiens

text: UAE(leukemic)

text: no


text: live

text: Generic

text: antibody FLI1 (Abcam, Ab15289)

text: Homo sapiens

text: UAE(leukemic)

text: UAE_FLI1(Abcam_ab15289)_5hrs zinc

text: 5 hrs zinc


text: live

text: Generic

text: SKNO-1 cell line

characteristic: cell line

text: Homo sapiens

text: no


text: DOE Joint Genome Institute

text: live

text: Generic

text: Escherichia coli MG1655

characteristic: description

characteristic: sample number

characteristic: strain

text: Generic sample from Escherichia coli str. K-12 substr. MG1655


Lake Lanier 16S RNA T1

characteristic: External Id

text: GATECH

text: live

text: Generic

text: Lake Lanier time-series 16S rRNA amplicon sequencing

text: freshwater metagenome

text: Lake Lanier 16S RNA T1


text: UCR

characteristic: INSDC center name

text: live

text: Generic

characteristic: clone

text: Hevea brasiliensis

text: mature leaves, PB217

text: mature leaves

characteristic: tissue

text: Endogenous small RNAs from Hevea brasiliensis, PB217, mature leaves


text: UCR

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Hevea brasiliensis

text: young leaves, PB217

text: young leaves

text: Endogenous small RNAs from Hevea brasiliensis, PB217, young leaves


text: UCR

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Hevea brasiliensis

characteristic: organism

text: mature leaves, PB260

text: mature leaves

text: Endogenous small RNAs from Hevea brasiliensis, PB260, mature leaves


text: UCR

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Hevea brasiliensis

text: young leaves, PB260

text: young leaves

text: Endogenous small RNAs from Hevea brasiliensis, PB260, young leaves

characteristic: title


text: DOE Joint Genome Institute

text: live

text: Generic

text: Escherichia coli MG1655

text: Escherichia coli str. K-12 substr. MG1655


Lake Lanier 16S RNA T2

text: GATECH

text: live

text: Generic

text: freshwater metagenome

text: Lake Lanier 16S RNA T2


Lake Lanier 16S RNA T3

text: GATECH

text: live

text: Generic

text: freshwater metagenome

text: Lake Lanier 16S RNA T3


Lake Lanier 16S RNA T4

text: GATECH

text: live

text: Generic

text: freshwater metagenome

text: Lake Lanier 16S RNA T4


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Thalassiosira pseudonana TAG accumulation

text: Thalassiosira pseudonana

text: TAG accumulation

text: Generic sample from Thalassiosira pseudonana


text: DOE Joint Genome Institute

text: live

text: Generic

text: Zea mays ssp. mays

text: Zea mays subsp. mays

text: ssp. mays

text: Generic sample from Zea mays subsp. mays


text: DOE Joint Genome Institute

text: live

text: Generic

text: Alkaline Insect Gut Metagenome

text: termite gut metagenome

text: Generic sample from termite gut metagenome


text: live

text: Generic

text: Halanaerobium sp. 'sapolanicus'

text: Halanaerobium hydrogeniformans

text: 'sapolanicus'

text: Generic sample from Halanaerobium hydrogeniformans


text: live

text: Generic

text: Spathaspora passalidarum

text: Spathaspora passalidarum

text: Generic sample from Spathaspora passalidarum


text: live

text: Generic

text: Desulfovibrio sp. U5L

text: Desulfovibrio sp. U5L

text: Generic sample from Desulfovibrio sp. U5L


text: live

text: Generic

text: Cloacibacillus evryensis DSM 19522

text: Cloacibacillus evryensis DSM 19522

text: DSM 19522

text: Generic sample from Cloacibacillus evryensis DSM 19522


text: Plant Biology, Michigan State University

text: live

text: Generic

text: Stage 15 Flowers

characteristic: developmental stage

characteristic: ecotype

text: Wild Type

characteristic: genotype/variation

text: Arabidopsis thaliana

text: Stage 15 flower receptacles Col-0 WT

text: Flower Receptacles, from base of flower to slightly above attachment point of floral organs, including petal, sepal, and stamen tissue in between.

text: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 1


text: live

text: Generic

text: Stage 15 Flowers

text: Wild Type

text: Arabidopsis thaliana

text: Stage 15 flower receptacles Col-0 WT

text: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 2


text: live

text: Generic

text: Stage 15 Flowers

text: Wild Type

text: Arabidopsis thaliana

text: Stage 15 flower receptacles Col-0 WT

text: mRNA from Arabidopsis Col-0 Wild Type stage 15 flower receptacles 3


text: live

text: Generic

text: Stage 15 Flowers

text: hae-3 hsl2-3 mutant

text: Arabidopsis thaliana

text: Stage 15 flower receptacles hae-3 hsl2-3 mutant

text: mRNA from Arabidopsis Col-0 hae-3 hsl2-3 stage 15 flower receptacles 1


text: live

text: Generic

text: Stage 15 Flowers

text: hae-3 hsl2-3 mutant

text: Arabidopsis thaliana

text: mRNA from Arabidopsis Col-0 hae-3 hsl2-3 stage 15 flower receptacles 2


text: live

text: Generic

text: Stage 15 Flowers

text: hae-3 hsl2-3 mutant

text: Arabidopsis thaliana

text: mRNA from Arabidopsis Col-0 hae-3 hsl2-3 stage 15 flower receptacles 3


text: DNA Replication Group, National Cancer Institute

text: live

text: Generic

characteristic: cell cycle stage

text: Human erythromyeloblastoid leukemia cell line K562

characteristic: cell line

text: Cultured cancer cell line

characteristic: cell type

text: none (input control)

characteristic: chip antibody

text: Homo sapiens

text: Chronic myeloid leukaemia


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: S

text: Cultured cancer cell line

text: none (input control)

text: Homo sapiens

text: Chronic myeloid leukaemia


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Cultured cancer cell line

text: H3K79me2 (Abcam, Lot# 939260, cat# ab3594)

text: Homo sapiens

text: Chronic myeloid leukaemia


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: S

text: Cultured cancer cell line

text: Homo sapiens

text: Chronic myeloid leukaemia


text: live

text: Generic

characteristic: NCBI submission package

text: Cultured cancer cell line

text: H3K4me3 (Millipore, Lot# RF0807002, cat# CS20580)

text: Homo sapiens

characteristic: organism

text: Chronic myeloid leukaemia


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: S

text: Cultured cancer cell line

text: Homo sapiens

text: Chronic myeloid leukaemia


text: live

text: Generic

text: All

text: Cultured cancer cell line

text: Homo sapiens

text: Chronic myeloid leukaemia

characteristic: title


text: live

text: Generic

text: All

text: Cultured cancer cell line

text: IgG (Santa Cruz, Lot# C2210, cat# SC-2027)

text: Homo sapiens

text: Chronic myeloid leukaemia


text: Laboratory of Experimental Medecine, Faculty of Medecine, Free University of Brussels

text: live

text: Generic

text: Homo sapiens

text: islet preparation_control condition

text: islets of Langerhans

characteristic: tissue

text: islet preparation 1 under control condition


text: live

text: Generic

text: Homo sapiens

text: islet preparation_cytokine treatment

text: islets of Langerhans

text: islet preparation 1 under cytokine treatment


text: live

text: Generic

text: Homo sapiens

text: islet preparation_control condition

text: islets of Langerhans

text: islet preparation 2 under control condition


text: live

text: Generic

text: Homo sapiens

text: islet preparation_cytokine treatment

text: islets of Langerhans

text: islet preparation 2 under cytokine treatment


text: live

text: Generic

text: Homo sapiens

text: islet preparation_control condition

text: islets of Langerhans

text: islet preparation 3 under control condition


text: live

text: Generic

text: Homo sapiens

text: islet preparation_cytokine treatment

text: islets of Langerhans

text: islet preparation 3 under cytokine treatment


text: live

text: Generic

text: Homo sapiens

text: islet preparation_control condition

text: islets of Langerhans

text: islet preparation 4 under control condition


text: live

text: Generic

text: Homo sapiens

text: islet preparation_cytokine treatment

text: islets of Langerhans

text: islet preparation 4 under cytokine treatment


text: live

text: Generic

text: Homo sapiens

text: islet preparation_control condition

text: islets of Langerhans

text: islet preparation 5 under control condition


text: live

text: Generic

text: Homo sapiens

text: islet preparation_cytokine treatment

text: islets of Langerhans

text: islet preparation 5 under cytokine treatment


text: ARC Centre of Excellence for Coral Reef Studies, James Cook University

text: live

text: Generic

text: primary polyp

characteristic: developmental stage

text: Acropora millepora

text: Primary polyps at 380 ppm

text: whole polyps

text: Control 1

text: 380 ppm (control)

characteristic: treatment


text: live

text: Generic

text: primary polyp

text: Acropora millepora

text: Primary polyps at 380 ppm

text: whole polyps

text: Control 2

text: 380 ppm (control)


text: live

text: Generic

text: primary polyp

text: Acropora millepora

text: Primary polyps at 380 ppm

text: whole polyps

text: Control 3

text: 380 ppm (control)


text: live

text: Generic

text: primary polyp

text: Acropora millepora

text: Primary polyps at 750 ppm

text: whole polyps

text: 750 ppm 1

text: 750 ppm


text: live

text: Generic

text: primary polyp

text: Acropora millepora

text: Primary polyps at 750 ppm

text: whole polyps

text: 750 ppm 2

text: 750 ppm


text: live

text: Generic

text: primary polyp

text: Acropora millepora

text: Primary polyps at 750 ppm

text: whole polyps

text: 750 ppm 3

text: 750 ppm


text: live

text: Generic

text: primary polyp

text: Acropora millepora

text: Primary polyps at 1000 ppm

text: whole polyps

text: 1000 ppm 1

text: 1000 ppm


text: live

text: Generic

text: primary polyp

text: Acropora millepora

text: Primary polyps at 1000 ppm

text: whole polyps

text: 1000 ppm 2

text: 1000 ppm


text: live

text: Generic

text: primary polyp

text: Acropora millepora

text: Primary polyps at 1000 ppm

text: whole polyps

text: 1000 ppm 3

text: 1000 ppm


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Helicobacter pylori Hp A-11

text: Hp A-11

characteristic: strain

text: Helicobacter pylori Hp A-11


text: live

text: Generic

text: Helicobacter pylori Hp H-11

text: Hp H-11

text: Helicobacter pylori Hp H-11


text: live

text: Generic

text: Helicobacter pylori Hp H-16

text: Hp H-16

text: Helicobacter pylori Hp H-16


text: live

text: Generic

text: Helicobacter pylori Hp H-18

text: Hp H-18

text: Helicobacter pylori Hp H-18


text: live

text: Generic

text: Helicobacter pylori Hp H-19

text: Hp H-19

text: Helicobacter pylori Hp H-19


text: live

text: Generic

text: Helicobacter pylori Hp H-21

text: Hp H-21

text: Helicobacter pylori Hp H-21


text: live

text: Generic

text: Helicobacter pylori Hp A-14

text: Hp A-14

text: Helicobacter pylori Hp A-14


text: live

text: Generic

text: Helicobacter pylori Hp A-17

text: Hp A-17

text: Helicobacter pylori Hp A-17


text: live

text: Generic

text: Helicobacter pylori Hp A-8

text: Hp A-8

text: Helicobacter pylori Hp A-8


text: live

text: Generic

text: Helicobacter pylori Hp H-10

text: Hp H-10

text: Helicobacter pylori Hp H-10


text: live

text: Generic

text: Helicobacter pylori Hp H-24b

text: Hp H-24b

text: Helicobacter pylori Hp H-24b


text: live

text: Generic

text: Helicobacter pylori Hp A-16

text: Hp A-16

text: Helicobacter pylori Hp A-16


text: live

text: Generic

text: Helicobacter pylori Hp A-20

text: Hp A-20

text: Helicobacter pylori Hp A-20


text: live

text: Generic

text: Helicobacter pylori Hp A-6

text: Hp A-6

text: Helicobacter pylori Hp A-6


text: live

text: Generic

text: Helicobacter pylori Hp A-9

text: Hp A-9

text: Helicobacter pylori Hp A-9


text: live

text: Generic

text: Helicobacter pylori Hp H-23

text: Hp H-23

text: Helicobacter pylori Hp H-23


text: live

text: Generic

text: Helicobacter pylori Hp A-26

text: Hp A-26

text: Helicobacter pylori Hp A-26


text: live

text: Generic

text: Helicobacter pylori Hp A-27

text: Hp A-27

text: Helicobacter pylori Hp A-27


text: live

text: Generic

text: Helicobacter pylori Hp A-4

text: Hp A-4

text: Helicobacter pylori Hp A-4


text: live

text: Generic

text: Helicobacter pylori Hp A-5

text: Hp A-5

text: Helicobacter pylori Hp A-5


text: live

text: Generic

text: Helicobacter pylori Hp P-2b

text: Hp P-2b

text: Helicobacter pylori Hp P-2b


text: live

text: Generic

text: Helicobacter pylori Hp P-30

text: Hp P-30

text: Helicobacter pylori Hp P-30


text: live

text: Generic

text: Helicobacter pylori Hp H-44

text: Hp H-44

text: Helicobacter pylori Hp H-44


text: live

text: Generic

text: Helicobacter pylori Hp H-5b

text: Hp H-5b

text: Helicobacter pylori Hp H-5b


text: live

text: Generic

text: Helicobacter pylori Hp P-15b

text: Hp P-15b

text: Helicobacter pylori Hp P-15b


text: live

text: Generic

text: Helicobacter pylori Hp P-15

text: Hp P-15

text: Helicobacter pylori Hp P-15


text: live

text: Generic

text: Helicobacter pylori Hp P-16

text: Hp P-16

text: Helicobacter pylori Hp P-16


text: live

text: Generic

text: Helicobacter pylori Hp P-1b

text: Hp P-1b

text: Helicobacter pylori Hp P-1b


text: live

text: Generic

text: Helicobacter pylori Hp H-24c

text: Hp H-24c

text: Helicobacter pylori Hp H-24c


text: live

text: Generic

text: Helicobacter pylori Hp P-25

text: Hp P-25

text: Helicobacter pylori Hp P-25


text: live

text: Generic

text: Helicobacter pylori Hp P-3

text: Hp P-3

text: Helicobacter pylori Hp P-3


text: live

text: Generic

text: Helicobacter pylori Hp H-42

text: Hp H-42

text: Helicobacter pylori Hp H-42


text: live

text: Generic

text: Helicobacter pylori Hp M9

text: Hp M9

text: Helicobacter pylori Hp M9


text: live

text: Generic

text: Helicobacter pylori Hp P-11

text: Hp P-11

text: Helicobacter pylori Hp P-11


text: live

text: Generic

text: Helicobacter pylori Hp P-13

text: Hp P-13

text: Helicobacter pylori Hp P-13


text: live

text: Generic

text: Helicobacter pylori Hp P-1

text: Hp P-1

text: Helicobacter pylori Hp P-1


text: live

text: Generic

text: Helicobacter pylori Hp P-25c

text: Hp P-25c

text: Helicobacter pylori Hp P-25c


text: live

text: Generic

text: Helicobacter pylori Hp H-30

text: Hp H-30

text: Helicobacter pylori Hp H-30


text: live

text: Generic

text: Helicobacter pylori Hp P-74

text: Hp P-74

text: Helicobacter pylori Hp P-74


text: live

text: Generic

text: Helicobacter pylori Hp P-8

text: Hp P-8

text: Helicobacter pylori Hp P-8


text: live

text: Generic

text: Helicobacter pylori Hp P-26

text: Hp P-26

text: Helicobacter pylori Hp P-26


text: live

text: Generic

text: Helicobacter pylori Hp P-41

text: Hp P-41

text: Helicobacter pylori Hp P-41


text: live

text: Generic

text: Helicobacter pylori Hp P-4d

text: Hp P-4d

text: Helicobacter pylori Hp P-4d


text: live

text: Generic

text: Helicobacter pylori Hp H-43

text: Hp H-43

text: Helicobacter pylori Hp H-43


text: live

text: Generic

text: Helicobacter pylori Hp H-6

text: Hp H-6

text: Helicobacter pylori Hp H-6


text: live

text: Generic

text: Helicobacter pylori Hp P-11b

text: Hp P-11b

text: Helicobacter pylori Hp P-11b


text: live

text: Generic

text: Helicobacter pylori Hp P-23

text: Hp P-23

text: Helicobacter pylori Hp P-23


text: live

text: Generic

text: Helicobacter pylori Hp P-25d

text: Hp P-25d

text: Helicobacter pylori Hp P-25d


text: live

text: Generic

text: Helicobacter pylori Hp H-29

text: Hp H-29

text: Helicobacter pylori Hp H-29


text: live

text: Generic

text: Helicobacter pylori Hp P-8b

text: Hp P-8b

text: Helicobacter pylori Hp P-8b


text: live

text: Generic

text: Helicobacter pylori Hp P-13b

text: Hp P-13b

text: Helicobacter pylori Hp P-13b


text: live

text: Generic

text: Helicobacter pylori Hp P-2

text: Hp P-2

text: Helicobacter pylori Hp P-2


text: live

text: Generic

text: Helicobacter pylori Hp H-4

text: Hp H-4

text: Helicobacter pylori Hp H-4


text: live

text: Generic

text: Helicobacter pylori Hp P-3b

text: Hp P-3b

text: Helicobacter pylori Hp P-3b


text: live

text: Generic

text: Helicobacter pylori Hp H-45

text: Hp H-45

text: Helicobacter pylori Hp H-45


text: live

text: Generic

text: Helicobacter pylori Hp H-24

text: Hp H-24

text: Helicobacter pylori Hp H-24


text: live

text: Generic

text: Helicobacter pylori Hp H-34

text: Hp H-34

text: Helicobacter pylori Hp H-34


text: live

text: Generic

text: Helicobacter pylori Hp H-41

text: Hp H-41

text: Helicobacter pylori Hp H-41


text: live

text: Generic

text: Helicobacter pylori Hp M1

text: Hp M1

text: Helicobacter pylori Hp M1


text: live

text: Generic

text: Helicobacter pylori Hp P-28b

text: Hp P-28b

text: Helicobacter pylori Hp P-28b


text: live

text: Generic

text: Helicobacter pylori Hp P-4c

text: Hp P-4c

text: Helicobacter pylori Hp P-4c


text: live

text: Generic

text: Helicobacter pylori Hp H-3

text: Hp H-3

text: Helicobacter pylori Hp H-3


text: live

text: Generic

text: Helicobacter pylori Hp H-9

text: Hp H-9

text: Helicobacter pylori Hp H-9


text: live

text: Generic

text: Helicobacter pylori Hp M2

text: Hp M2

text: Helicobacter pylori Hp M2


text: live

text: Generic

text: Helicobacter pylori Hp H-27

text: Hp H-27

text: Helicobacter pylori Hp H-27


text: live

text: Generic

text: Helicobacter pylori Hp H-28

text: Hp H-28

text: Helicobacter pylori Hp H-28


text: live

text: Generic

text: Helicobacter pylori Hp P-62

text: Hp P-62

text: Helicobacter pylori Hp P-62


text: live

text: Generic

text: Helicobacter pylori Hp H-36

text: Hp H-36

text: Helicobacter pylori Hp H-36


text: live

text: Generic

text: Helicobacter pylori Hp M3

text: Hp M3

text: Helicobacter pylori Hp M3


text: live

text: Generic

text: Helicobacter pylori Hp M4

text: Hp M4

text: Helicobacter pylori Hp M4


text: live

text: Generic

text: Helicobacter pylori Hp M5

text: Hp M5

text: Helicobacter pylori Hp M5


text: live

text: Generic

text: Helicobacter pylori Hp M6

text: Hp M6

text: Helicobacter pylori Hp M6


text: Department of Chemistry and Biochemistry, University of California Los Angeles

text: live

text: Generic

text: TAP

characteristic: medium

text: Chlamydomonas reinhardtii

text: Chlamydomonas reinhardtii 2137 - Fe replete (TAP)


text: live

text: Generic

text: TAP

text: Chlamydomonas reinhardtii

text: Chlamydomonas reinhardtii 2137 - Fe-deficient (TAP)


text: live

text: Generic

text: TAP

text: Chlamydomonas reinhardtii

text: Chlamydomonas reinhardtii 2137 - Fe-limited (TAP)


text: live

text: Generic

text: Minimal media

text: Chlamydomonas reinhardtii

text: Chlamydomonas reinhardtii 2137 - Fe replete (Minimal media)


text: live

text: Generic

text: Minimal media

text: Chlamydomonas reinhardtii

text: Chlamydomonas reinhardtii 2137 - Fe-deficient (Minimal media)


text: live

text: Generic

text: Minimal media

text: Chlamydomonas reinhardtii

text: Chlamydomonas reinhardtii 2137 - Fe-limited (Minimal media)


text: University of California, Berkeley

text: live

text: Generic

text: viral metagenome

text: LT Viral Concentrate sample from 2007, Site A, time point 1


text: University of California, Berkeley

text: live

text: Generic

text: viral metagenome

text: LT Viral Concentrate sample from 2007, Site A, time point 2


text: University of California, Berkeley

text: live

text: Generic

text: viral metagenome

text: LT Viral Concentrate sample from 2009, Site B, DNA pooled from 3 time points on Jan 5th, 2009


text: University of California, Berkeley

text: live

text: Generic

text: viral metagenome

text: LT Viral Concentrate sample from 2010, Site B, time point 1


text: University of California, Berkeley

text: live

text: Generic

text: viral metagenome

text: LT Viral Concentrate sample from 2010, Site B, time point 2


text: University of California, Berkeley

text: live

text: Generic

text: viral metagenome

text: LT Viral Concentrate sample from 2010, Site B, time point 3


text: University of California, Berkeley

text: live

text: Generic

text: viral metagenome

text: LT Viral Concentrate sample from 2010, Site B, time point 4


text: University of California, Berkeley

text: live

text: Generic

text: viral metagenome

text: LT Viral Concentrate sample from 2010, Site A


Bartonella quintana JK39

text: Broad Institute

text: live

text: MIGS.ba

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: terrestial biome

characteristic: environment (biome)

text: host-associated

characteristic: environment (feature)

text: blood

characteristic: environment (material)

text: USA: San Francisco, CA

characteristic: investigation type

text: Bartonella quintana JK 39

text: Comparative analysis

characteristic: project name

text: Homo sapiens

characteristic: specific host

text: JK 39

text: MIGS Cultured Bacterial/Archaeal sample from Bartonella quintana JK 39


Bartonella rochalimae B. roch

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: blood

text: USA: San Francisco, CA

text: Bartonella rochalimae ATCC BAA-1498

characteristic: organism

text: Comparative analysis

text: Homo sapiens

text: BMGH

text: MIGS Cultured Bacterial/Archaeal sample from Bartonella rochalimae ATCC BAA-1498

text: type strain of Bartonella rochalimae

characteristic: type material


Escherichia coli Ec11-4984

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: MIGS.ba

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: Stool

text: France: Bordeaux

text: Escherichia coli O104:H4 str. Ec11-4984

text: Comparative analysis

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Escherichia coli O104:H4 str. Ec11-4984

characteristic: title


Escherichia coli Ec11-5604

text: Broad Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: terrestial biome

characteristic: environment (biome)

text: host-associated

characteristic: environment (feature)

text: Stool

characteristic: environment (material)

text: France: Bordeaux

characteristic: investigation type

text: Escherichia coli O104:H4 str. Ec11-5604

text: Comparative analysis

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Escherichia coli O104:H4 str. Ec11-5604


Escherichia coli Ec11-4986

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: Stool

text: France: Bordeaux

text: Escherichia coli O104:H4 str. Ec11-4986

text: Comparative analysis

characteristic: project name

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Escherichia coli O104:H4 str. Ec11-4986


Escherichia coli Ec11-4987

text: Broad Institute

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: Stool

text: France: Bordeaux

text: Escherichia coli O104:H4 str. Ec11-4987

characteristic: organism

text: Comparative analysis

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Escherichia coli O104:H4 str. Ec11-4987


Escherichia coli Ec11-4988

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: MIGS.ba

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: Stool

text: France: Bordeaux

text: Escherichia coli O104:H4 str. Ec11-4988

text: Comparative analysis

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Escherichia coli O104:H4 str. Ec11-4988


Escherichia coli Ec11-5603

text: Broad Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: terrestial biome

characteristic: environment (biome)

text: host-associated

characteristic: environment (feature)

text: Stool

text: France: Bordeaux

text: Escherichia coli O104:H4 str. Ec11-5603

text: Comparative analysis

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Escherichia coli O104:H4 str. Ec11-5603

characteristic: title


Escherichia coli Ec11-6006

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: Stool

characteristic: environment (material)

text: France: Bordeaux

characteristic: investigation type

text: Escherichia coli O104:H4 str. Ec11-6006

text: Comparative analysis

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Escherichia coli O104:H4 str. Ec11-6006


Bartonella quintana JK 67

text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: blood

text: USA: San Francisco, CA

text: Bartonella quintana JK 67

text: Comparative analysis

characteristic: project name

text: Homo sapiens

characteristic: specific host

text: JK 67

text: MIGS Cultured Bacterial/Archaeal sample from Bartonella quintana JK 67


Bartonella quintana JK 68

text: Broad Institute

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: blood

text: USA: San Francisco, CA

text: Bartonella quintana JK 68

characteristic: organism

text: Comparative analysis

text: Homo sapiens

text: JK 68

text: MIGS Cultured Bacterial/Archaeal sample from Bartonella quintana JK 68


Bartonella quintana JK 56

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: MIGS.ba

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: blood

text: USA: San Francisco, CA

text: Bartonella quintana JK 56

text: Comparative analysis

text: Homo sapiens

text: JK 56

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bartonella quintana JK 56


Bartonella quintana JK 63

text: Broad Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: terrestial biome

characteristic: environment (biome)

text: host-associated

characteristic: environment (feature)

text: blood

text: USA: San Francisco, CA

text: Bartonella quintana JK 63

text: Comparative analysis

text: Homo sapiens

text: JK 63

text: MIGS Cultured Bacterial/Archaeal sample from Bartonella quintana JK 63

characteristic: title


Bartonella quintana JK 31

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: blood

characteristic: environment (material)

text: USA: San Francisco, CA

characteristic: investigation type

text: Bartonella quintana JK 31

text: Comparative analysis

text: Homo sapiens

text: JK 31

text: MIGS Cultured Bacterial/Archaeal sample from Bartonella quintana JK 31


Bartonella quintana JK 19

text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: blood

text: USA: San Francisco, CA

text: Bartonella quintana JK 19

text: Comparative analysis

characteristic: project name

text: Homo sapiens

characteristic: specific host

text: JK 19

text: MIGS Cultured Bacterial/Archaeal sample from Bartonella quintana JK 19


Bartonella henselae JK 53

text: Broad Institute

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: blood

text: USA: San Francisco, CA

text: Bartonella henselae JK 53

characteristic: organism

text: Comparative analysis

text: Homo sapiens

text: JK 53

text: MIGS Cultured Bacterial/Archaeal sample from Bartonella henselae JK 53


Bartonella henselae Zeus

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: MIGS.ba

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

text: terrestial biome

text: host-associated

text: blood

text: USA: San Francisco, CA

text: Bartonella henselae str. Zeus

text: Comparative analysis

text: cat

text: Zeus

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bartonella henselae str. Zeus


Planta Orion 2008

text: Centro Nacional Patagonico

text: live

text: Generic

characteristic: PAHs

characteristic: date

text: Intertidal sediment sample obtained in 2008 from Ushuaia Bay, Argentina. The site is polluted with hydrocarbon compounds (mainly petroleum refined products). The sample was shown to harbor aromatic and aliphatic hydrocarbons.

characteristic: description

characteristic: lat

characteristic: long

text: marine sediment metagenome

characteristic: sample temperature

text: OR08 subantarctic sediment sample

characteristic: title

characteristic: total aliphatic hydrocarbons


slurry control

characteristic: External Id

text: Centro Nacional Patagonico

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: agitation

text: The experiment was performed as a sediment-in-seawater slurry without any other additions. The sediment sample used was OR08. After twenty days, samples were taken for DNA extraction.

text: marine sediment metagenome

characteristic: temperature

characteristic: time

text: experimental system control sample (expOR08-c)

characteristic: volume


slurry oil

text: Centro Nacional Patagonico

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: crude oil

text: Sediment-in-seawater slurry with 0.25% oil addition. The sample used to build the slurry was OR08 sediment sample. After 20 days, samples were obtained for DNA extraction.

text: marine sediment metagenome

characteristic: organism

text: oil exposed experimental system (expOR08-O)


oil plus nutrients slurry

text: Centro Nacional Patagonico

text: live

text: Generic

characteristic: ammonium chloride

text: The experiment (sediment in seawater slurry) was build from OR08 sediment sample. In addition, nutrients (5 mM ammonium chloride and 0.25 mM sodium phosphate) were added. After 20 days samples were obtained for DNA extraction.

characteristic: description

text: marine sediment metagenome

characteristic: sodium phosphate

text: Experimental system with oil and nutrients addition (expOR08-ON)

characteristic: title


Salmonella Heidelberg N19992

characteristic: External Id

text: clinical/research

characteristic: IFSAC+ Category

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: Pathogen

characteristic: keywords

characteristic: ontological term

text: Salmonella enterica subsp. enterica serovar Heidelberg str. N19992

text: Heidelberg

characteristic: serovar

characteristic: strain

text: enterica

characteristic: sub species

text: Salmonella Heidelberg N19992


PF sediment sample

text: Centro Nacional Patagonico

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Fracasso beach is located in the natural protected area of Peninsula Valdes, Patagonia, Argentina. It is a pristine site, and no hydrocarbon pollution was detected in our study. Its sediments are used as feeding ground by migratory birds.

characteristic: lat

characteristic: long

text: marine sediment metagenome

text: Sediments from Fracasso beach, Patagonia, Argentina


Cordova Cove sediment sample 1

text: Centro Nacional Patagonico

text: live

text: Generic

characteristic: SRA accession

text: Cordova Cove is a chronically polluted site in Comodoro Rivadavia, Argentina. It is mostly polluted with crude oil. The sample was obtained in 2008, 100 days after an oil spill which covered the beach along various kilometers.

characteristic: description

text: marine sediment metagenome

characteristic: organism

text: Cordova Cove 2008 sediment sample 1

characteristic: title


CRISPRmultigen

characteristic: External Id

text: University of California, Berkeley

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: metagenome

text: CRISPR diversity and phage mutation study after multiple generations


text: Molecular Biology, MGH

text: live

text: Generic

text: RAG2-/- Abelson-transformed pro-B cells

characteristic: cell type

characteristic: chip antibody

text: Mus musculus

text: Pro-B_H3R2me2s ChIP-seq

text: H3R2me2s ChIP-seq


text: Molecular Biology, MGH

text: live

text: Generic

text: RAG2-/- Abelson-transformed pro-B cells

text: Mus musculus

text: Pro-B_H3R2me2sK4me3 ChIP-seq

characteristic: strain

text: H3R2me2sK4me3 ChIP-seq


text: Molecular Biology, MGH

characteristic: INSDC last update

text: live

text: Generic

text: RAG2-/- Abelson-transformed pro-B cells

text: Abcam

characteristic: chip antibody vendor

text: Mus musculus

text: Pro-B_H3K4me3 ChIP-seq

text: H3K4me3 ChIP-seq


Salmonella Heidelberg 670102-5

text: clinical/research

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

characteristic: ontological term

text: Salmonella enterica subsp. enterica serovar Heidelberg str. 670102-5

text: Heidelberg

characteristic: serovar

text: enterica

characteristic: sub species

text: Salmonella Heidelberg 670102-5


text: Plant Biology, Carnegie Institution

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: anti-myc antibody

characteristic: antibody

characteristic: genotype/variation

text: Arabidopsis thaliana

text: Etiolated seedlings

text: Etiolated seedlings

characteristic: tissue

text: PIF4 ChIP-Seq


characteristic: External Id

text: Plant Biology, Carnegie Institution

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: anti-myc antibody

text: Arabidopsis thaliana

characteristic: organism

text: Etiolated seedlings

text: Etiolated seedlings

text: Col-0 ChIP-Seq

characteristic: title


Mannheimia PHL213 RNA-Seq

text: Mississippi State University

characteristic: INSDC last update

text: live

text: Generic

text: Mannheimia haemolytica PHL213

characteristic: strain

text: A single sample of Mannheimia haemolytica PHL213


text: Mississippi State University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Transcriptome profile of a single sample of a povine isolate cell culture.

characteristic: description

text: Pasteurella multocida subsp. multocida str. 3480

text: Pasteurella multocida str. P-3480


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Female

characteristic: host sex

text: Ceratotherium simum simum

characteristic: sample name

text: simum

text: Generic sample from Ceratotherium simum simum


text: Karlsruhe Institute of Technology

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: AA - European eel _ R - German population M$ - male worm

text: Anguillicola crassus


text: Karlsruhe Institute of Technology

text: live

text: Generic

text: AA - European eel _ R - German population F$ - female worm

text: Anguillicola crassus


text: Karlsruhe Institute of Technology

text: live

text: Generic

text: AA - European eel _ T - Taiwanese population F$ - female worm

text: Anguillicola crassus


text: Karlsruhe Institute of Technology

text: live

text: Generic

text: AA - European eel _ T - Taiwanese population M$ - male worm

text: Anguillicola crassus


Cordova cove 2008 sample 2

text: Centro Nacional Patagonico

text: live

text: Generic

text: Cordova Cove is chronically polluted with hydrocarbon from crude oil extraction and transportation activities. In 2007 an oil spill covered various kilometers of coast. The sample was taken 100 days after the spill.

text: marine sediment metagenome

text: Cordova cove 2008 sample 2


Aplysia californica Genome Sequencing

text: University of Florida - Leonid Moroz

text: live

text: Generic

text: Aplysia californica Genome Sequencing. Illumina technology

text: Aplysia californica

text: Aplysia californica Genome Sequencing


text: Karlsruhe Institute of Technology

text: live

text: Generic

text: AJ - Japanese eel _ R - German population F$ - female worm

text: Anguillicola crassus


text: Karlsruhe Institute of Technology

text: live

text: Generic

text: AJ - Japanese eel _ R - German population M$ - male worm

text: Anguillicola crassus


text: Karlsruhe Institute of Technology

text: live

text: Generic

text: AJ - Japanese eel _ T - Taiwanese population M$ - male worm

text: Anguillicola crassus


L. stagnalis control library

text: INRA

text: live

text: Generic

text: The sample was built from multiple tissue RNA extraction from individuals of three different geographical origins (Rennes F: INRA Renilys culture, Amsterdam NL: VU Amsterdam laboratory culture, S*nderborg DK: Sandjberg, Aarhus Univ.) reared under control conditions.

text: Lymnaea stagnalis

text: L. stagnalis multiple tissue sample from a pool of control individuals


text: Karlsruhe Institute of Technology

text: live

text: Generic

text: AJ - Japanese eel _ T - Taiwanese population F$ - female worm

text: Anguillicola crassus


central sample

text: Centro Nacional Patagonico

text: live

text: Generic

text: this sample is the central sample where pooled information is kept for all samples of the study

text: marine sediment metagenome

text: pooled samples for study SRP010562.2


text: ENCODE DCC

text: live

text: Generic

text: Lonza

characteristic: biomaterial provider

text: bronchial epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: controlid

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

characteristic: datatype description

text: input was generic_male (should have been female),baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_female,p-value cutoff: 0.1

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: NHBE


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Lonza

text: epidermal keratinocytes

text: normal

text: ectoderm

text: human

text: U

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

text: Homo sapiens

characteristic: organism

text: tier 1

text: NHEK

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: F

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_K562,p-value cutoff: 0.1

text: Homo sapiens

text: tier 1

text: NaBut

characteristic: treatment

text: 0.5 mM Sodium Butyrate for 72 hours

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: ATCC

text: cancer

text: mesoderm

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: controlid

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: OHUrea

text: 100 uM Hydroxyurea for 72 hours


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: WiCell Research Institute

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

text: Homo sapiens

characteristic: organism

text: tier 1

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

text: Dr. D Sens at University of N. Dakota

characteristic: biomaterial provider

text: primary ureter cell culture of urothelial cells derived from a 12 year-old girl and immortalized by transfection with a temperature-sensitive SV-40 large T antigen gene

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: F

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_female,p-value cutoff: 0.1

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

text: Urothelia

characteristic: treatment

text: UT189 E.Coli treatment 1 hour, followed by 24 hour incubation

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Charles H. Graham, Department of Anatomy & Cell Biology, Queen's University at Kingston, Kingston, Ontario, Canada

text: trophoblast (HTR-8/SVneo) cell line, a thin layer of ectoderm that forms the wall of many mammalian blastulas and functions in the nutrition and implantation of the embryo

text: normal

text: ectoderm

characteristic: cell lineage

text: human

text: F

characteristic: cell sex

characteristic: controlid

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

characteristic: datatype description

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ATCC

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

text: ectoderm

text: F

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.1

text: Homo sapiens

characteristic: organism

text: tier 1

characteristic: title

text: 24 h with 1% p02 and 10mM Lactate, pH 6.7 (Crawford)