text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K27ac

characteristic: antibody antibodydescription

text: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: treatment description


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: antibody

text: Polyclonal antibody raised in rabbit against histone H3 containing the monomethylated lysine 4 (H3K4me1), using a KLH-conjugated synthetic peptide. Antibody Target: H3K4me1

characteristic: antibody antibodydescription

text: Histones are the main constituents of the protein part of chromosomes of eukaryotic cells. They are rich in the amino acids arginine and lysine and have been greatly conserved during evolution.Histone tails undergo numerous posttranslational modifications. This antibodies recognizes histone H3 monomethylated on lysine 4.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Diagenode

characteristic: antibody vendorname

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: cancer

text: endoderm

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

text: Farnham - University of Southern California

characteristic: line

text: Homo sapiens

characteristic: organism

text: USC_ChipSeq_PANC-1_H3K4me1_(pAb-037-050)_UCDavis

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: treatment description


Rpar All fragments

characteristic: External Id

text: American Museum of Natural History

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: All 454 fragments generated for Reichenowia parasitica.

characteristic: description

text: Reichenowia parasiticae

characteristic: organism

text: 454 pyrosequencing data for Reichenowia parasitica (1,053,345 fragments)

characteristic: title


text: Genome Technology & Biology, Genome Institute of Singapore

text: live

text: Generic

characteristic: cell line

text: colon

characteristic: cell type

text: Homo sapiens

text: Cell line was established from the primary colon carcinoma of an adult man

text: Genomic DNA of the cell line HCT116_IHH021

text: primary carcinoma

characteristic: tumor type


text: live

text: Generic

text: myeloid blast cells

text: Homo sapiens

text: Pleural effusion of a 53-year-old woman with chronic myeloid leukemia (CML) in blast crisis

text: Genomic DNA of the cell line K562_IHK002004_GAII

text: chronic myeloid leukemia


text: live

text: Generic

text: myeloid blast cells

text: Homo sapiens

text: Genomic DNA of the cell line K562_IHK002004_SOLiDv2

text: chronic myeloid leukemia


text: live

text: Generic

text: myeloid blast cells

text: Homo sapiens

text: Genomic DNA of the cell line K562_IHK016017_SOLiDv2

text: chronic myeloid leukemia


text: live

text: Generic

text: mammary gland; breast

text: Homo sapiens

text: Cell line was established from a 69-year-old Caucasian woman (after radio- and hormone therapy)

text: Genomic DNA of the cell line MCF-7_IHM072

text: metastatic mammary carcinoma, pleural effusion


text: La Jolla Institute for Allergy and Immunology

text: live

text: Generic

text: First

characteristic: biological replicate

text: Helicos HeliScope

characteristic: instrument model

text: Mus musculus

text: hmC-pulldown by GLIB method

characteristic: sample prep

text: V6.5 ES cells

text: GLIB_5hmC+BGT biol rep1


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Second

text: Helicos HeliScope

text: Mus musculus

text: hmC-pulldown by GLIB method

text: V6.5 ES cells

text: GLIB_5hmC+BGT biol rep2


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: First

text: Helicos HeliScope

text: Mus musculus

text: neg control for GLIB method

text: V6.5 ES cells

text: GLIB_5hmC-BGT biol rep 1


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Second

text: Helicos HeliScope

text: Mus musculus

text: neg control for GLIB method

text: V6.5 ES cells

text: GLIB_5hmC-BGT biol rep 2


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Second

text: Illumina HiSeq, Illumina Genome Analyzer II

text: Mus musculus

text: hmC mapping by anti-CMS antisera

text: V6.5 ES cells

text: CMS_IP biol rep 2


text: live

text: Generic

characteristic: SRA accession

text: First

text: Mus musculus

text: hmC mapping by anti-CMS antisera

text: V6.5 ES cells

text: CMS_IP biol rep 1


text: live

text: Generic

text: Second

text: Mus musculus

characteristic: organism

text: neg control forhmC mapping by anti-CMS antisera

text: V6.5 ES cells

text: CMS_Input biol rep 2


text: live

text: Generic

text: First

text: Mus musculus

text: V6.5 ES cells

text: CMS_Input biol rep 1

characteristic: title


text: live

text: Generic

text: Only

text: Helicos HeliScope

text: Mus musculus

text: MeDIP

text: V6.5 ES cells

text: MeDIP


text: University of California - Davis, Drosophila Population Genomics Project

text: live

text: Generic

text: Sub-Saharan African population - Zambia (Siavonga). Haploid embryo.

characteristic: description

text: Drosophila melanogaster


text: live

text: Generic

text: Sub-Saharan African population - Zambia (Siavonga). 5 generations of sib-sib inbreeding; haploid embryo.

text: Drosophila melanogaster


text: Kunming University of Science and Technology

text: live

text: Generic

characteristic: cultivar

text: Flue-cured tobacco

text: Grown for 2, 4, 8, 15 and 30 days, under low-potassium (50uM K+) condition

characteristic: dev-stage

characteristic: lab-host

text: root

characteristic: organ

text: Nicotiana tabacum

characteristic: strain

text: root

characteristic: tissue-type

text: Root suppression subtractive hybridization cDNA library of Nicotiana tabacum

text: pGEM-T Easy Vector

characteristic: vector


name: 1131394744531 E. coli O11 strain Bi632-42 STECO63-PE-ILI1-1 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Escherichia coli O11:K10:H10 strain Bi623-42 is used as the reference for O11 serotyping in the E. coli Reference Center at PSU.

text: Escherichia coli O11 str. Bi632-42

text: Generic sample from Escherichia coli O11 str. Bi632-42


text: J. Craig Venter Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Escherichia coli O18ab;K-:H14 strain F10018-41 is used as the reference for O18 serotyping in the E. coli Reference Center at PSU.

text: Escherichia coli O18 str. F10018-41

text: Generic sample from Escherichia coli O18 str. F10018-41


text: J. Craig Venter Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Escherichia coli O19ab:K-:H7 strain F8188-41 is used as the reference for O19 serotyping in the E. coli Reference Center at PSU.

text: Escherichia coli O19 str. F8188-41

text: Generic sample from Escherichia coli O19 str. F8188-41


name: 1131386628226 E. coli O23 strain P7a STECO66-PE-ILI4-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Escherichia coli O23:K18ab:H15 strain E39a is used as the reference for O23 serotyping in the E. coli Reference Center at PSU.

characteristic: description

text: Escherichia coli O23 str. P7a

characteristic: organism

text: Generic sample from Escherichia coli O23 str. P7a

characteristic: title


name: 1131386628228 E. coli O25 strain E39a STECO67-PE-ILI48-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Escherichia coli O25:K19:H12 strain E47a is used as the reference for O25 serotyping in the E. coli Reference Center at PSU.

text: Escherichia coli O25 str. E39a

text: Generic sample from Escherichia coli O25 str. E39a


name: 1131386628230 E. coli O27 strain E47a STECO68-PE-ILI14-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Escherichia coli O27:K-:H- strain F9884-41 is used as the reference for O27 serotyping in the E. coli Reference Center at PSU.

text: Escherichia coli O27 str. E47a

text: Generic sample from Escherichia coli O27 str. E47a


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: GBS cellulolytic enrichment 77S - water

text: hot springs metagenome

characteristic: sample number

text: Generic sample from hot springs metagenome


text: HSRC

text: live

text: Generic

text: Sesame growth and development analysis with seedlings,flowers and seeds transcriptome

text: Sesamum indicum

text: Sesame growth and development trancriptome


text: HSRC

text: live

text: Generic

text: Sesame hybrid F1 of Sesamum radiatum *Sesamum indicum L growth and development analysis with seedling transcriptome

text: Sesamum radiatum

text: sesame hybrid F1 of Sesamum radiatum *Sesamum indicum L seedling growth and development transcriptome


text: Department of Horticulture and Landscape Architecture, Purdue University

text: live

text: Generic

characteristic: ecotype

text: WT

characteristic: genotype/variation

text: Arabidopsis thaliana

text: seedling


text: live

text: Generic

text: ros1-4 mutant

text: Arabidopsis thaliana

text: seedling


text: live

text: Generic

text: idm1-1 mutant

text: Arabidopsis thaliana

text: seedling


text: live

text: Generic

text: rdd triple mutant

text: Arabidopsis thaliana

text: seedling


text: Equipe SP@RTE, UMR CNRS 6290, Université de Rennes 1

text: live

text: Generic

characteristic: antibody lot

text: Abcam

characteristic: antibody vendor

characteristic: background strain

characteristic: cell line

text: embryonal carcinoma cells

characteristic: cell type

characteristic: ip antibody

text: Mus musculus

text: RA-treated P19.6 cells, MEIS1 ChIP

text: MEIS1 ChIP-seq in RA-treated P19.6 cells

text: all-trans retinoic acid (RA)

characteristic: treatment

characteristic: treatment dosage

text: 48 hours

characteristic: treatment duration


characteristic: External Id

text: Functional Genomics Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: C. reinhardtii cells of cw15 mt- were grown in TAP in the dark. Total RNA was prepared from two biological replicates of each genotype using the Tri-Reagent™ SIGMA according to the manufacturer’s manual.

text: Chlamydomonas reinhardtii

text: Cell wall 15 dark wt


text: Functional Genomics Centre

text: live

text: Generic

characteristic: SRA accession

text: C. reinhardtii cells gun4, from insertion mutagenesis of cw15, were grown in TAP in the dark. Total RNA was prepared from two biological replicates of each genotype using the Tri-Reagent™ SIGMA according to the manufacturer’s manual.

characteristic: description

text: Chlamydomonas reinhardtii

characteristic: organism

text: GUN4 dark mutant

characteristic: title


text: Functional Genomics Centre

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: Cell wall 15 dark wt b


text: Functional Genomics Centre

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: GUN4 dark Mutant b


name: 1131399704001 Acinetobacter baumannii OIFC137 ACIN01-PE-ILI1-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii OIFC137

text: Acinetobacter baumannii OIFC137

characteristic: strain

text: Generic sample from Acinetobacter baumannii OIFC137


name: 1131399704003 Acinetobacter baumannii OIFC109 ACIN04-PE-ILI4-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii OIFC109

text: Acinetobacter baumannii OIFC109

text: Generic sample from Acinetobacter baumannii OIFC109


name: 1131399704005 Acinetobacter baumannii OIFC143 ACIN05-PE-ILI5-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii OIFC143

text: Acinetobacter baumannii OIFC143

text: Generic sample from Acinetobacter baumannii OIFC143


name: 1131399704007 Acinetobacter baumannii OIFC189 ACIN06-PE-ILI6-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii OIFC189

text: Acinetobacter baumannii OIFC189

text: Generic sample from Acinetobacter baumannii OIFC189


name: 1131399704009 Acinetobacter baumannii Canada BC-5 ACIN07-PE-ILI7-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii Canada BC-5

text: Acinetobacter baumannii Canada BC-5

text: Canada BC-5

text: Generic sample from Acinetobacter baumannii Canada BC-5


name: 1131399704011 Acinetobacter baumannii Naval-17 ACIN08-PE-ILI8-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii Naval-17

text: Acinetobacter baumannii Naval-17

text: Generic sample from Acinetobacter baumannii Naval-17


name: 1131399704015 Acinetobacter radioresistens WC-A-157 ACIN12-PE-ILI12-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter radioresistens WC-A-157

text: Acinetobacter radioresistens WC-A-157

text: Generic sample from Acinetobacter radioresistens WC-A-157


name: 1131399704013 Acinetobacter baumannii IS-123 ACIN11-PE-ILI11-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii IS-123

text: Acinetobacter baumannii IS-123

text: Generic sample from Acinetobacter baumannii IS-123


S. pneumoniae R6M2-PG

text: McGill University and Genome Quebec Innovation Center

text: live

text: Generic

text: Streptococcus pneumoniae R6M2-PG

text: Streptococcus pneumoniae R6M2-PG


text: Central Institute of Freshwater Aquaculture

text: live

text: Generic

text: 1st strand cDNA was synthesized from total RNA of Rohu ovary by mint technique of Evrogen. The cDNA was amplified by advantage-2 polymerase mix of Clonetech. The resulting ds-cDNA was normalized according to Trimmer-Direct cDNA normalization procedure of Evrogen. The cDNA were cloned in TOPO TA cloning vector of Invitrogen and sequenced in ABI-3130xl Genetic Analyzer.

text: E.coli

characteristic: lab-host

text: Labeo rohita

text: Ovary

characteristic: tissue-type

text: Rohu ovary library

text: plasmid

text: TOPO TA (Invitrogen)

characteristic: vector


text: Malaysian Palm Oil Board

text: live

text: Generic

text: Total RNA was isolated from oil palm non-embryogenic callus using the aqueous phenol extraction method. After total RNA extraction, poly (A)+ RNA was isolated using oligo-dT cellulose chromatography technique. Directional cDNA library were constructed using the ZAP-cDNA Synthesis Kit and the ZAP-cDNA Gigapack III Gold Cloning Kit (Stratagene). Oil palm non-embryogenic callus cDNAs were cloned and amplified once to produce a library with a titre of 1.38 X 10^9 pfu/ml.

text: Non-embryogenic callus

characteristic: dev-stage

text: XL1-Blue MRF'

text: Elaeis guineensis

text: EcoRI

text: XhoI

text: Callus

text: CA (Oil Palm Non Embryogenic Callus)


characteristic: External Id

text: Malaysian Palm Oil Board

text: live

text: Generic

text: Non-embryogenic callus

text: XL1-Blue MRF'

text: Elaeis guineensis

text: EcoRI

text: XhoI

text: Callus

text: CB (Oil Palm Non Embryogenic Callus)


text: Malaysian Palm Oil Board

characteristic: INSDC center name

text: live

text: Generic

text: Inflorescence F12

text: Elaeis guineensis

text: EcoRI

text: NotI

text: Inflorescence

text: FDB (Oil Palm Flower)


text: Malaysian Palm Oil Board

characteristic: INSDC first public

text: live

text: Generic

text: Kernel

text: Elaeis guineensis

text: EcoRI

text: Kernel

text: K (Oil Palm Kernel)


text: Malaysian Palm Oil Board

characteristic: INSDC last update

text: live

text: Generic

text: Mesocarp

text: Elaeis guineensis

text: EcoRI

text: Mesocarp

text: M (Oil Palm Mesocarp)


text: National Institute of Allergy and Infectious Diseases

text: live

text: Generic

text: unidirectional library was constructed using long distance PCR (Smart cDNA kit) and Lambda TriplEx2 vector

text: adults and nymphs

text: salivary glands

characteristic: organ

text: Triatoma rubida

text: both

characteristic: sex

text: Triatoma rubida salivary gland library TrubSG1

text: Phage

text: Lambda TriplEx2


text: Malaysian Palm Oil Board

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mesocarp

text: Elaeis guineensis

text: EcoRI

text: Mesocarp

text: ME (Oil Palm Mesocarp)


text: Malaysian Palm Oil Board

text: live

text: Generic

characteristic: NCBI submission package

text: Inflorescence F19

text: Elaeis guineensis

text: EcoRI

text: Inflorescence

text: SFB (Oil Palm Inflorescence)

text: pT7T3 18U


name: Tragopogon dubius (SFF - S29R.GBASCJU06.sff )

text: University of Florida

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: 454 Titanium Run Name: S29R.GBASCJU06.sff (1/8th plate); Tissue Type: Leaf ; Normalized Library: No;

characteristic: description

text: Tragopogon dubius

text: Tragopogon dubius Titanium (Soltis and Soltis Collection # 2665-2)


name: Tragopogon dubius (SFF S17B.GCGW95B04.sff)

text: University of Florida

text: live

text: Generic

text: 454 Titanium Run Name: S17B.GCGW95B04.sff (1/8th plate); Tissue Type: Leaf ; Normalized Library: No;

text: Tragopogon dubius

characteristic: organism

text: Tragopogon dubius Titanium (Soltis and Soltis Collection # 2666-16)

characteristic: title


name: Tragopogon dubius (SFF - S30B.GD6RYLD01.sff )

text: University of Florida

text: live

text: Generic

text: 454 Titanium Run Name: S30B.GD6RYLD01.sff (1/8th plate); Tissue Type: Leaf ; Normalized Library: No;

text: Tragopogon dubius

text: Tragopogon dubius Titanium (Soltis and Soltis Collection # 2669-5)


name: Tragopogon dubius (SFF - S21A.F7U8JSA05.sff )

text: University of Florida

text: live

text: Generic

text: 454 Titanium Run Name: S21A.F7U8JSA05.sff (1/8th plate); Tissue Type: Leaf ; Normalized Library: No;

text: Tragopogon dubius

text: Tragopogon dubius Titanium (Soltis and Soltis Collection # 2669-7)


name: Tragopogon pratensis (SFF - S34B.GD6RYLD02.sff)

text: University of Florida

text: live

text: Generic

text: 454 Titanium Run Name: S34B.GD6RYLD02.sff (1/8th plate); Tissue Type: Leaf ; Normalized Library: No;

text: Tragopogon pratensis

text: Tragopogon pratensis Titanium (Soltis and Soltis Collection # 2608-37)


name: Tragopogon pratensis (SFF - S6B2.GDU8OPN08.sff)

text: University of Florida

text: live

text: Generic

text: 454 Titanium Run Name: S6B2.GDU8OPN08.sff (1/8th plate); Tissue Type: Leaf ; Normalized Library: No;

text: Tragopogon pratensis

text: Tragopogon pratensis Titanium (Soltis and Soltis Collection # 2609-24)


text: University of Florida

text: live

text: Generic

text: 454 Titanium Run Name: S26C.GBASCJU05.sff (1/8th plate); Tissue Type: Leaf ; Normalized Library: No;

text: Tragopogon pratensis

text: Tragopogon pratensis Titanium (Soltis and Soltis Collection # 2692-16)


name: Tragopogon miscellus (FASTQ 4006_T_miscellus_DNase_1.fastq)

text: University of Florida

text: live

text: Generic

text: Illumina Run Name: 4006_T_miscellus_DNase_1.fastq; Tissue Type: Leaf ; Normalized Library: No;

text: Tragopogon miscellus

text: Tragopogon miscellus Illumina (Soltis and Soltis Collection # 2605-9-15)


name: Tragopogon miscellus (FASTQ 4007_T_miscellus_DNase.fastq)

text: University of Florida

text: live

text: Generic

text: Illumina Run Name: 4007_T_miscellus_DNase.fastq; Tissue Type: Leaf ; Normalized Library: No;

text: Tragopogon miscellus

text: Tragopogon miscellus Illumina (Soltis and Soltis Collection # 2604-34-6)


text: Broad Institute

text: live

text: Generic

text: Female

characteristic: host sex

text: Pelomonas sp. ORNL_6EZ5-Gt_7_Pl1-64

characteristic: sample name

characteristic: strain

text: Generic sample from Pelomonas sp. ORNL_6EZ5-Gt_7_Pl1-64


Ir 20-8

characteristic: External Id

text: Center for Comparative Genomics and Bioinformatics

text: live

text: Generic

text: Ixodes ricinus whole genome sequencing project

text: Ixodes ricinus

text: single unfed adult female I. ricinus


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC center name

text: live

text: Generic

text: Yersinia pestis PY-01

text: Yersinia pestis PY-01


text: CSF

characteristic: INSDC first public

text: live

text: Generic

text: kidney mus musculus 200-500bp black6 genomic DNA

text: Mus musculus


text: DKFZ Heidelberg

characteristic: INSDC last update

text: live

text: Generic

text: NTera2 D1 cell line

characteristic: cell line

text: pluripotent

characteristic: developmental stage

text: Homo sapiens

text: NTera2 D1 cell line

text: MeDIP-Seq-uninduced


text: DKFZ Heidelberg

text: live

characteristic: INSDC status

text: Generic

text: NTera2 D1 cell line

text: differentiated

text: Homo sapiens

text: NTera2 D1 cell line

text: MeDIP-Seq-induced


text: DKFZ Heidelberg

text: live

text: Generic

characteristic: NCBI submission model

text: NTera2 D1 cell line

text: pluripotent

text: Homo sapiens

text: NTera2 D1 cell line

text: hMeDIP-Seq-uninduced


text: DKFZ Heidelberg

text: live

text: Generic

characteristic: NCBI submission package

text: NTera2 D1 cell line

text: differentiated

text: Homo sapiens

text: NTera2 D1 cell line

text: hMeDIP-Seq-induced


text: University of Nebraska - Non Human Primate Genomics Center

characteristic: INSDC secondary accession

text: live

text: Generic

text: RNA was extracted from a Chinese origin rhesus macaque in the laboratory of Dr. Howard Fox. Sequencing was performed at the University of Nebraska Medical Center.

characteristic: individual id

text: Macaca mulatta

text: caudate

characteristic: tissue type

text: Rhesus macaque Animal Number (001T-NHP), Caudate


text: University of Southern California

text: live

text: Generic

characteristic: SRA accession

text: From Winters population

characteristic: description

text: Drosophila melanogaster

characteristic: organism


name: microorganisms of high-temperature petroleum reservoir

text: Shanghai Jiao Tong University

text: live

text: Generic

text: oil production facility metagenome

text: microbial community analysis in petroleum reservoir

characteristic: title


mpsy

text: Beijing institute of genomics

text: live

text: Generic

text: Methanolobus psychrophilus R15

text: cold adaption of a psychrophilic methanogenic archaeon


text: CSF

text: live

text: Generic

text: kidney mus musculus 200-500bp 129sv genomic DNA

text: Mus musculus


text: CSF

text: live

text: Generic

text: ES cells mus musculus 200-500bp HMSc1 genomic DNA

text: Mus musculus


text: CSF

text: live

text: Generic

text: ES cells mus musculus 200-500bp HMSc2 genomic DNA

text: Mus musculus


text: Laboratory of Muscle Stem Cells and Gene Regulation, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health

text: live

text: Generic

text: control

characteristic: agent

text: C2C12 myoblasts

text: PolII 8WG16

characteristic: chip antibody

text: Covance

characteristic: chip antibody vendor

text: Mus musculus

text: C2C12 myoblasts

characteristic: strain


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: flavopiridol

text: C2C12 myoblasts

text: PolII 8WG16

text: Covance

text: Mus musculus

text: C2C12 myoblasts


text: Department of Cell and Molecular Biology, Karolinska Institutet

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ES-derived neural progenitor cells

characteristic: cell type

text: Sox3 (T. Edlund)

text: 4 days in differentiation conditions with retinoic acid

characteristic: differentiation specificity

text: Mus musculus

text: Neural progenitor cells

text: Sox3 ChIP-Seq in neural progenitor cells, biol repl 1


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: ES-derived neural progenitor cells

text: Sox3 (T. Edlund)

text: Mus musculus

text: Neural progenitor cells

text: Sox3 ChIP-Seq in neural progenitor cells, biol repl 2


text: live

text: Generic

characteristic: SRA accession

text: ES-derived neural progenitor cells

text: Sox3 (T. Edlund)

text: Mus musculus

text: Neural progenitor cells

text: Sox3 ChIP-Seq in neural progenitor cells, biol repl 3


text: live

text: Generic

text: ES-derived neural progenitor cells

text: Sox2 (Millipore)

text: Mus musculus

characteristic: organism

text: Neural progenitor cells

text: Sox2 ChIP-Seq in neural progenitor cells, biol repl 1


text: live

text: Generic

text: ES-derived neural progenitor cells

text: Sox2 (Millipore)

text: Mus musculus

text: Neural progenitor cells

text: Sox2 ChIP-Seq in neural progenitor cells, biol repl 2

characteristic: title


text: live

text: Generic

text: ES-derived neural progenitor cells

text: Sox2 (Millipore)

text: Mus musculus

text: Neural progenitor cells

text: Sox2 ChIP-Seq in neural progenitor cells, biol repl 3


text: live

text: Generic

text: ES-derived neurons

text: Sox11 (M. Wegner)

text: 11 days in differentiation conditions with retinoic acid

text: Mus musculus

text: Neurons

text: Sox11 ChIP-Seq in early formed neurons, biol repl 1


text: live

text: Generic

text: ES-derived neurons

text: Sox11 (M. Wegner)

text: Mus musculus

text: Neurons

text: Sox11 ChIP-Seq in early formed neurons, biol repl 2


text: live

text: Generic

text: ES-derived neurons

text: Sox11 (M. Wegner)

text: Mus musculus

text: Neurons

text: Sox11 ChIP-Seq in early formed neurons, biol repl 3


text: live

text: Generic

text: ES-derived neurons

text: IgG (Millipore)

text: Mus musculus

text: Neurons

text: Control IgG ChIP-Seq in early formed neurons


text: live

text: Generic

text: Sox3-transfected C2C12 cells

text: H3K4me3 (Abcam)

text: Mus musculus

text: C2C12 muscle progenitor cells

text: H3K4me3 ChIP-Seq in Sox3-transfected C2C12 cells


text: live

text: Generic

text: GFP-transfected C2C12 cells

text: H3K4me3 (Abcam)

text: Mus musculus

text: C2C12 muscle progenitor cells

text: H3K4me3 ChIP-Seq in GFP-transfected C2C12 cells


text: live

text: Generic

text: Sox3-transfected C2C12 cells

text: H3K27me3 (Millipore)

text: Mus musculus

text: C2C12 muscle progenitor cells

text: H3K27me3 ChIP-Seq in Sox3-transfected C2C12 cells


text: live

text: Generic

text: GFP-transfected C2C12 cells

text: H3K27me3 (Millipore)

text: Mus musculus

text: C2C12 muscle progenitor cells

text: H3K27me3 ChIP-Seq in GFP-transfected C2C12 cells


text: Department of Cell and Molecular Biology, Karolinska Institutet

text: live

text: Generic

text: Sox3-transfected C2C12 cells

text: Sox3 (T. Edlund)

text: Mus musculus

text: C2C12 muscle progenitor cells

text: Sox3 ChIP-Seq in Sox3-transfected C2C12 cells


text: live

text: Generic

text: ES-cell derived neurons

text: 10 days of differentiation

characteristic: differentiation

text: PSA NCAM sorted (Chemicon antibody)

characteristic: modification

text: Mus musculus

text: PSA NCAM sorted neurons

text: RNA-Seq PSA NCAM+ neurons, biol repl 1


text: live

text: Generic

text: ES-cell derived neurons

text: 10 days of differentiation

text: PSA NCAM sorted (Chemicon antibody)

text: Mus musculus

text: PSA NCAM sorted neurons

text: RNA-Seq PSA NCAM+ neurons, biol repl 2


text: live

text: Generic

text: ES-cell derived neural progenitor cells

text: 4 days of differentiation

text: Sox2 and Sox3 siRNA (Invitrogen) transfected, 24h

text: Mus musculus

text: Neural progenitor cells

text: RNA-Seq Sox2/Sox3 siRNA in neural progenitor cells, after 24h


text: live

text: Generic

text: ES-cell derived neural progenitor cells

text: 4 days of differentiation

text: Sox2 and Sox3 siRNA (Invitrogen) transfected, 48h

text: Mus musculus

text: Neural progenitor cells

text: RNA-Seq Sox2/Sox3 siRNA in neural progenitor cells, after 48h


text: live

text: Generic

text: ES-cell derived neural progenitor cells

text: 4 days of differentiation

text: Universal siRNA (Invitrogen) transfected, 48h

text: Mus musculus

text: Neural progenitor cells

text: RNA-Seq Universal siRNA control in neural progenitor cells, after 48h


text: live

text: Generic

text: ES-cell derived neural progenitor cells

text: 4 days of differentiation

text: Untransfected, 24h

text: Mus musculus

text: Neural progenitor cells

text: RNA-Seq Neural progenitor cells, after 24h


text: Ludwig Institute for Cancer Research

text: live

text: Generic

characteristic: antibody

characteristic: cell line

text: fetal lung fibroblast

text: Homo sapiens

text: human IMR90 fibroblasts


characteristic: External Id

text: Ludwig Institute for Cancer Research

text: live

text: Generic

text: PolII

text: fetal lung fibroblast

text: Homo sapiens

text: human IMR90 fibroblasts


text: Ludwig Institute for Cancer Research

characteristic: INSDC center name

text: live

text: Generic

text: IgG

text: fetal lung fibroblast

text: Homo sapiens

text: human IMR90 fibroblasts


text: Ludwig Institute for Cancer Research

characteristic: INSDC first public

text: live

text: Generic

text: fetal lung fibroblast

text: Homo sapiens

text: human IMR90 fibroblasts


text: Stanley Fields, Genome Sciences, University of Washington

characteristic: INSDC last update

text: live

text: Generic

text: Biotin-16-UTP selection with Dynabeads MyOne Streptavidin C1

characteristic: affinity selection

text: Saccharomyces cerevisiae

text: AATGATACGGCGACCACCGAGATCTACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

characteristic: pe pcr primer f

text: CAAGCAGAAGACGGCATACGAGATCGGTCTCTTTCCCTACACGACGCTCTTCCGATCT

characteristic: pe pcr primer r

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

characteristic: sequencing primer

text: Log-phase growth cells

characteristic: strain

text: Nuclear run-on RNA library 1


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Saccharomyces cerevisiae

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: Log-phase growth cells

text: Nuclear run-on RNA library 2


text: live

text: Generic

characteristic: SRA accession

text: Saccharomyces cerevisiae

characteristic: organism

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: Log-phase growth cells

text: Nuclear run-on RNA library 3

characteristic: title


text: live

text: Generic

text: Saccharomyces cerevisiae

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: Log-phase growth cells

text: Total RNA library 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: Log-phase growth cells

text: Total RNA library 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: Log-phase growth cells

text: Total RNA library 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: Heat shock-treated cells

text: Heatshock nuclear run-on RNA library 1

text: 39°C for 20 min

characteristic: treatment


characteristic: External Id

text: live

text: Generic

text: Saccharomyces cerevisiae

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: Heat shock-treated cells

text: Heatshock nuclear run-on RNA library 2

text: 39°C for 20 min


characteristic: INSDC center name

text: live

text: Generic

text: Saccharomyces cerevisiae

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: Heat shock-treated cells

text: Heatshock nuclear run-on RNA library 3

text: 39°C for 20 min


characteristic: INSDC first public

text: live

text: Generic

text: Saccharomyces cerevisiae

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: Heat shock-treated cells

text: Heatshock total RNA library 1

text: 39°C for 20 min


characteristic: INSDC last update

text: live

text: Generic

text: Saccharomyces cerevisiae

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: Heat shock-treated cells

text: Heatshock total RNA library 2

text: 39°C for 20 min


text: live

text: Generic

text: Saccharomyces cerevisiae

text: TACACTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: Heat shock-treated cells

text: Heatshock total RNA library 3

text: 39°C for 20 min


text: live

text: Generic

characteristic: affinity selection

text: Saccharomyces cerevisiae

text: AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT

text: CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT

text: ACACTCTTTCCCTACACGACGCTCTTCCGATCT

text: Log-phase growth cells

text: 3' Nuclear run-on RNA library


text: Institut Pasteur

text: live

text: Generic

text: Aedes albopictus

text: U4.4 - SINV-GFP


name: 1131403485013 Acinetobacter baumannii OIFC109 ACIN04-PE-ILI4-01-FR Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii OIFC109

characteristic: description

text: Acinetobacter baumannii OIFC109

text: Generic sample from Acinetobacter baumannii OIFC109


name: 1131403485017 Acinetobacter baumannii OIFC189 ACIN06-PE-ILI6-01-FR Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii OIFC189

text: Acinetobacter baumannii OIFC189

text: Generic sample from Acinetobacter baumannii OIFC189


name: 1131403485015 Acinetobacter baumannii OIFC143 ACIN05-PE-ILI5-01-FR Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii OIFC143

text: Acinetobacter baumannii OIFC143

text: Generic sample from Acinetobacter baumannii OIFC143


name: 1131403485019 Acinetobacter baumannii Canada BC-5 ACIN07-PE-ILI7-01-FR Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii Canada BC-5

text: Acinetobacter baumannii Canada BC-5

text: Canada BC-5

text: Generic sample from Acinetobacter baumannii Canada BC-5


name: 1131396491518 Acinetobacter baumannii Naval-17 ACIN08-PE-ILI8-01-FR Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii Naval-17

text: Acinetobacter baumannii Naval-17

text: Generic sample from Acinetobacter baumannii Naval-17


name: 1131396491514 Acinetobacter baumannii IS-123 ACIN11-PE-ILI11-01-FR Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii IS-123

text: Acinetobacter baumannii IS-123

text: Generic sample from Acinetobacter baumannii IS-123


name: 1131396491516 Acinetobacter radioresistens WC-A-157 ACIN12-PE-ILI12-01-FR Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter radioresistens WC-A-157

text: Acinetobacter radioresistens WC-A-157

text: Generic sample from Acinetobacter radioresistens WC-A-157


name: 1131403485011 Acinetobacter baumannii OIFC137 ACIN01-PE-ILI1-01-FR Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Reference genome of Acinetobacter baumannii OIFC137

text: Acinetobacter baumannii OIFC137

text: Generic sample from Acinetobacter baumannii OIFC137


text: Scienze Biomolecolari e Biotecnologie, Università di Milano

text: live

text: Generic

text: GFP:Living Colors_ full-length A.v. polyclonal antibody Clontech

characteristic: chip antibody

text: inflorescence meristem and flower from stages 1 to 11

characteristic: developmental stage

text: pSVP::SVP-GFP svp-41

characteristic: genotype/variation

text: Arabidopsis thaliana

text: Inflorescence


characteristic: INSDC secondary accession

text: live

text: Generic

text: seedlings 2 weeks old

text: pSVP::SVP-GFP svp-41

text: Arabidopsis thaliana

text: seedling


text: live

characteristic: INSDC status

text: Generic

text: wild type Col

text: Arabidopsis thaliana

text: Inflorescence

text: Inflorescence_wt col_rep1


text: live

text: Generic

characteristic: NCBI submission model

text: wild type Col

text: Arabidopsis thaliana

text: Inflorescence

text: Inflorescence_wt col_rep2


A. stenosperma

text: Embrapa Genetic Resources and Biotechnology

text: live

text: Generic

characteristic: NCBI submission package

text: Arachis stenosperma

text: A. stenosperma and Cercosporidium personatum


text: CBRG

text: live

text: Generic

characteristic: SRA accession

text: embryonic stem cells

characteristic: cell type

text: Abcam

characteristic: chip antibody vendor

text: wild type

text: Mus musculus

text: Embryonic stem cells WT

characteristic: strain


characteristic: External Id

text: CBRG

text: live

text: Generic

text: embryonic stem cells

text: Abcam

text: Eed -/-

text: Mus musculus

characteristic: organism

text: Embryonic stem cells WT

characteristic: title


A. duranensis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Arachis duranensis

text: Arachis duranensis


text: Howard Chang, Dermatology, Stanford University

text: live

text: Generic

characteristic: cell line

text: modENCODE isolate of Schneider's line 2

characteristic: lincrna probes

text: Drosophila melanogaster


text: live

text: Generic

text: HeLa

text: HeLa S3 cells overexpressing human telomerase and TERC

text: TERC

text: Homo sapiens


text: live

text: Generic

text: MDA-231 cell line overexpressing human HOTAIR

text: HOTAIR

text: Homo sapiens


text: live

text: Generic

text: MDA-231 cell line overexpressing human HOTAIR with EZH2 knocked down

text: HOTAIR

text: Homo sapiens


text: live

text: Generic

text: HeLa

text: HeLa S3 cells

text: TERC

text: Homo sapiens

text: HeLa


text: live

text: Generic

text: MDA-231 cell line overexpressing human HOTAIR using LacZ probe

text: LacZ

text: Homo sapiens


characteristic: DSSC #

text: UC Berkeley

text: live

text: Generic

text: Each sample contains the paired-end sequencing files of RNA isolated from adult D. pseudoobscura flies.

characteristic: description

text: Dpse\wild-type

characteristic: genotype

characteristic: inbred line

text: Drosophila pseudoobscura

text: female

characteristic: sex

text: gonadectomized carcass

characteristic: tissue

text: Drosophila pseudoobscura MV25 female gonadectomized carcass


text: Instituto Oswaldo Cruz

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: reproductive organs

characteristic: organ

text: Lutzomyia longipalpis

text: male

text: Lapinha

text: BAR

text: pDNR LIB

characteristic: vector


characteristic: External Id

text: Instituto Superior de Agronomia

text: live

text: Generic

text: Quercus rotundifolia

characteristic: organism

text: Leaf

characteristic: tissue-type

text: Quercus rotundifolia Genomic DNA

characteristic: title

text: Plasmid


text: UC Berkeley

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Each sample contains the paired-end sequencing files of RNA isolated from adult D. pseudoobscura flies, line MV25.

text: Dpse\wild-type

text: Drosophila pseudoobscura

text: female

text: ovary

text: Drosophila pseudoobscura ovary


text: UC Berkeley

text: live

text: Generic

characteristic: description

text: Dpse\wild-type

characteristic: genotype

characteristic: inbred line

text: Drosophila pseudoobscura

text: female

text: whole carcass

text: Drosophila pseudoobscura female whole body


text: UC Berkeley

text: live

characteristic: INSDC status

text: Generic

text: Dpse\wild-type

text: Drosophila pseudoobscura

text: male

characteristic: sex

text: accessory gland

characteristic: tissue

text: Drosophila pseudoobscura accessory gland


text: UC Berkeley

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Dpse\wild-type

text: Drosophila pseudoobscura

text: male

text: gonadectomized carcass

text: Drosophila pseudoobscura male gonadectomized carcass


characteristic: External Id

text: UC Berkeley

text: live

text: Generic

text: Dpse\wild-type

text: Drosophila pseudoobscura

text: male

text: testis

text: Drosophila pseudoobscura testis


text: UC Berkeley

text: live

text: Generic

text: Dpse\wild-type

text: Drosophila pseudoobscura

characteristic: organism

text: male

text: whole body

text: Drosophila pseudoobscura male whole body


Transcriptome of seed sample

text: Jilin Agriculture University

text: live

text: Generic

text: Carthamus tinctorius

text: Transcriptome of seed sample


Transcriptome of leaf sample

text: Jilin Agriculture University

text: live

text: Generic

text: Carthamus tinctorius

text: Transcriptome of leaf sample


Transcriptome of petal sample

text: Jilin Agriculture University

text: live

text: Generic

text: Carthamus tinctorius

text: Transcriptome of petal sample


Italia

text: Bilkent University

text: live

text: Generic

text: Vitis vinifera

text: Italia


text: Bilkent University

text: live

text: Generic

text: Vitis vinifera


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Sinorhizobium meliloti BO21CC

text: Sinorhizobium meliloti BO21CC

characteristic: sample number

characteristic: strain

text: Generic sample from Sinorhizobium meliloti BO21CC


name: Heat stress individual 1 of Freshwater mussel, Villosa lienosa RNA-Seq Project

text: Auburn University

characteristic: INSDC center name

text: live

text: Generic

text: Leaunio lienosus

text: Villosa lienosa, heat stress individual 1

characteristic: title


name: Heat stress individual 2 of Freshwater mussel, Villosa lienosa RNA-Seq Project

text: Auburn University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Leaunio lienosus


name: Control individual 1 of Freshwater mussel, Villosa lienosa RNA-Seq Project

text: Auburn University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Leaunio lienosus

text: Villosa lienosa, control individual 1


name: Control individual 2 of Freshwater mussel, Villosa lienosa RNA-Seq Project

text: Auburn University

text: live

text: Generic

characteristic: description

text: Leaunio lienosus

text: Villosa lienosa, control individual 2


text: Beijing Genome Institute

text: live

text: Generic

text: 903 cases resequencing project

text: China

characteristic: nation

text: Homo sapiens

text: Noninvasive fetal trisomy detection


Maize mature leaf

text: Academia Sinica

text: live

characteristic: INSDC status

text: Generic

text: Zea mays

text: Maize mature leaf - mesophyll cell


Maize mature leaf - bundle sheath cell

text: Academia Sinica

text: live

text: Generic

text: Zea mays

text: Maize mature leaf - bundle sheath cell


Glarea lozoyensis - de novo sequencing

text: Institute of Pharmaceutical Sciences

text: live

text: Generic

characteristic: collection date

text: DNA extraction was done acording standard protocols for Aspergillus nidulans [1]. Starting material for sequencing 20 micrograms clean DNA. [1] T. Y.-K. Chow et al. A rapid method for isolation of total nucleic acids from Aspergillus nidulans.

text: Spain

characteristic: geo loc name

text: mutant derived from ATCC 20957

characteristic: isolation source

text: Glarea lozoyensis

text: ATCC 74030

text: Glarea lozoyensis - Pneumocandin B0 (CANCIDASTM) Overproducer


text: Plant and Environmental Protection Sciences, University of Hawaii at Manoa

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Alternaria brassicicola

characteristic: fungal pathogen

text: 7 weeks old Brassica oleracea

characteristic: infected host plants

text: 4 days post inoculation

characteristic: infection stage

text: Brassica oleracea

text: wildtype

characteristic: pathogen genotype/variation

text: mixture of pathogen and host

text: mixed tissues of plant leaves and fungal mycelia

characteristic: tissue

text: wild type #1


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Alternaria brassicicola

text: 7 weeks old Brassica oleracea

text: 4 days post inoculation

text: Brassica oleracea

characteristic: organism

text: wildtype

text: mixture of pathogen and host

text: wild type #2

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Alternaria brassicicola

text: 7 weeks old Brassica oleracea

text: 4 days post inoculation

text: Brassica oleracea

text: wildtype

text: mixture of pathogen and host

text: wild type #3


text: live

characteristic: INSDC status

text: Generic

text: Alternaria brassicicola

text: 7 weeks old Brassica oleracea

text: 4 days post inoculation

text: Brassica oleracea

text: mixture of pathogen and host

text: Δabvf19-8 #1


text: live

text: Generic

text: Alternaria brassicicola

text: 7 weeks old Brassica oleracea

text: 4 days post inoculation

text: Brassica oleracea

text: mixture of pathogen and host

text: Δabvf19-8 #2


text: live

text: Generic

text: Alternaria brassicicola

text: 7 weeks old Brassica oleracea

text: 4 days post inoculation

text: Brassica oleracea

text: mixture of pathogen and host

text: Δabvf19-8 #3


text: Campus IFOM-IEO, European Institute of Oncology

text: live

text: Generic

text: Anti-acetyl-Histone H4

characteristic: antibody

text: # 06-866

characteristic: antibody catalog number

text: Upstate/Millipore

characteristic: antibody vendor

text: Primary bone marrow-derived macrophages (BMDM) cells (7th day of differentiation)

characteristic: cell type

text: wild type (HDAC3 +/-)

characteristic: genotype/variation

text: Mus musculus

characteristic: strain

text: No treatment

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Anti-acetyl-Histone H4

text: # 06-866

text: Upstate/Millipore

text: wild type (HDAC3 +/-)

text: Mus musculus

text: LPS (100 ng/ml) for 4hrs


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Anti-acetyl-Histone H4

text: # 06-866

text: Upstate/Millipore

text: knockout (HDAC3 -/-)

text: Mus musculus

text: No treatment


characteristic: INSDC first public

text: live

text: Generic

text: Anti-acetyl-Histone H4

text: # 06-866

text: Upstate/Millipore

text: knockout (HDAC3 -/-)

text: Mus musculus

characteristic: organism

text: LPS (100 ng/ml) for 4hrs


text: MPIMG

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: resequencing for identifying disease causal mutations

characteristic: title


text: Brem, Molecular & Cell Biology, UC Berkeley

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: 200 bp

characteristic: average insert size

text: Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10860

characteristic: biomaterial provider

characteristic: cell line

text: B-lymphocyte cell line

text: Homo sapiens

text: Coriell Institute


text: live

characteristic: INSDC status

text: Generic

text: 200 bp

text: Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA17106

text: B-lymphocyte cell line

characteristic: cell type

text: Homo sapiens

text: Coriell Institute


text: live

text: Generic

text: 200 bp

text: Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA17189

text: B-lymphocyte cell line

text: Homo sapiens

text: Coriell Institute


text: live

text: Generic

text: 200 bp

text: Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA17207

text: B-lymphocyte cell line

text: Homo sapiens

text: Coriell Institute


text: live

text: Generic

text: 200 bp

text: Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA17220

text: B-lymphocyte cell line

text: Homo sapiens

text: Coriell Institute


text: live

text: Generic

text: 200 bp

text: Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA17253

text: B-lymphocyte cell line

text: Homo sapiens

text: Coriell Institute


text: live

text: Generic

text: B-lymphocyte cell line

text: Homo sapiens

text: Coriell Institute


text: Lila Vodkin, Crop Sciences, University of Illinois

text: live

text: Generic

text: Clark standard

characteristic: cultivar

text: wild type

characteristic: genotype

text: Glycine max

text: shoot tip

text: shoot tip

characteristic: tissue

text: Clark standard


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Clark glabrous

text: hairless mutant

text: Glycine max

text: shoot tip

text: shoot tip

text: Clark glabrous


name: Caenorhabditis remanei SB146 larval L4 RNA library L4-2

characteristic: External Id

text: University of Washington Genome Sciences

characteristic: INSDC center name

text: live

text: Generic

text: C.remanei strain SB146 L4 animal; Synchronized L1s grew at 20 degree for about 42 hrs on enriched OP50 plates. This is a biological replicate for SB146_L4-1. This sample is available through the modENCODE DCC (www.modencode.org) as: SB146_L4-2 Local library name: SB146_L4-2 Quality values are ASCII encoded Phred + 33.

characteristic: description

text: Caenorhabditis remanei


name: Caenorhabditis remanei SB146 early embryo RNA library EE-2

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Illumina sequences of C. remanei SB146 early embryo library EE-2 polyA+ RNAseq random fragment library. C. remanei strain SB146 early embryos. Bleached from synchronized adult stage animals grown at 20 degrees on enriched OP50 plates. This sample is available through the modENCODE DCC (www.modencode.org) as: SB146_EE-2 Local library name: SB146_EE-2 Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

text: Caenorhabditis remanei

characteristic: organism


name: Caenorhabditis remanei SB146 larval L2 RNA library L2-5

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: C. remanei strain SB146 L2 animal; Synchronized L1s grew at 20 degree for about 18 hrs on enriched OP50 plates. Illumina sequencing of C. remanei SB146 larval L2 library L2-5 polyA+ RNAseq random fragment library. This sample is available through the modENCODE DCC (www.modencode.org) as: SB146_L2-5 This sample is a biological replicate for DCC project: SB146_L2-3 Local library name: SB146_L2-5 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis remanei

characteristic: title


name: C.remanei strain SB146 Young adult female_

text: live

text: Generic

text: C. remanei strain SB146 Young adult female; Synchronized L1s grew at 20 degrees for about 54 hrs on enriched OP50 plates; then the females were picked from these worms. This sample is available through the modENCODE DCC (www.modencode.org) as: SB146_YAF-1 Local library name: SB146_YAF-1 Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

text: Caenorhabditis remanei

text: C.remanei strain SB146 Young adult female; Synchronized L1s grew at 20 degree for about 54 hrs on enriched OP50 plates; then the females were picked from these worms.


name: C.remanei strain SB146 Young adult male_

text: live

text: Generic

text: C. remanei strain SB146 Young adult male; Synchronized L1s grew at 20 degrees for about 54 hrs on enriched OP50 plates; then the males were picked from these worms. This sample is available through the modENCODE DCC (www.modencode.org) as: SB146_YAM-1 Local library name: SB146_YAM-1 Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

text: Caenorhabditis remanei

text: C.remanei strain SB146 Young adult male; Synchronized L1s grew at 20 degree for about 54 hrs on enriched OP50 plates; then the males were picked from these worms.


control group

text: AUBURN UNIVERSITY

text: live

text: Generic

text: Ictalurus punctatus

text: total RNA from control group


3h group

text: AUBURN UNIVERSITY

text: live

text: Generic

text: Ictalurus punctatus

text: Total RNA from 3h


24h group

text: AUBURN UNIVERSITY

text: live

text: Generic

text: Ictalurus punctatus

text: Total RNA from 24h group


48h group

text: AUBURN UNIVERSITY

text: live

text: Generic

text: Ictalurus punctatus

text: Total RNA from 48h group


text: Bioinformatics, Biosciences, Università di Milano

text: live

text: Generic

text: RNA-Seq

characteristic: library strategy

text: Drosophila melanogaster

text: whole body RNA

text: male whole body


text: live

characteristic: INSDC status

text: Generic

text: RNA-Seq

text: Drosophila melanogaster

text: whole body RNA

text: female whole body


Pinus Chloroplast Genomes HybSeq

text: Oregon St Univ - Center for Genome Research & Biocomputing

text: live

text: Generic

text: Pinus

text: Pinus Plastome Phylogenomics, HybSeq/Illumina sequencing


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Oidiodendron maius Zn

text: Oidiodendron maius Zn

text: Zn

characteristic: strain

text: Generic sample from Oidiodendron maius Zn


text: Beijing Genome Institute

text: live

text: Generic

text: 903 cases resequencing project

text: China

characteristic: nation

text: Homo sapiens

text: Noninvasive fetal trisomy detection


text: Beijing Genome Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: 903 cases resequencing project

text: China

text: Homo sapiens

text: Noninvasive fetal trisomy detection


soil amoA and nxrB amplicon sequencing

text: Dept. of Microbial Ecology, University of Vienna

text: live

text: Generic

text: Individual genes were amplified by standard PCR from the respective samples. Thereafter, barcodes were ligated to both ends of the amplicons. All barcoded amplicons were pooled in equimolar ratio and subjected to 454 pyrosequencing on the Titanium platform. archaeal amoA primers: CamoA-19f ATG GTC TGG YTW AGA CG; CamoA-616r GCC ATC CAB CKR TAN GTC CA bacterial amoA primers: amoA-1F* GGG GHT TYT ACT GGT GGT; amoA-2R CCC CTC KGS AAA GCC TTC TTC Nitrospira nxrB primers: nxrBF169 TAC ATG TGG TGG AAC A; nxrBR638 CGG TTC TGG TCR ATC A Nitrobacter nxrB primers: nxrBF706 AAG ACC TAY TTC AAC TGG TC; nxrBR1431 CGC TCC ATC GGY GGA ACM AC Used nucleotide barcodes: GGGCTGACGTG Namibian fallow soil #01; GGGCACAGCTG Namibian arable soil #04; GGGCAGCACTG Namibian dry woodland #06; GGGCTACTATG Namibian arable soil #08; GGGCTCTGATG Namibian fallow soil #10; GGGCATGCATG Namibian dry woodland #11; GGGCACTGTCG Namibian arable soil #14; GGGCTACGTCG Namibian dry woodland #16; GGGCTGTCTCG Namibian fallow soil #17; GGGCAGCTGCG Namibian fallow soil #23; GGGCTCATGCG Costa Rica rain forest soil; GGGCTATAGCG Costa Rica arable soil; GGGCACGAGCG Austrian arable soil; GGGCATCGACG Austrian riparian forest soil; GGGCTGAGACG Greenland tundra soil; GGGCAGAGTAG Austrian spruce forest soil; GGGCTCACTAG Activated sludge from the Ingolstadt wastewater treatment plant

text: environmental samples

text: amplicon sequencing of archaeal amoA, bacterial amoA, Nitrospira nxrB, Nitrobacter nxrB from 16 soils and 1 wastewater treatment plant


Cae 06815

text: University of Chicago

text: live

text: Generic

text: Chlorocebus aethiops

text: Cae 06815


Pvc 597m

text: University of Chicago

text: live

text: Generic

text: Propithecus coquereli

text: Pvc 597m


Dm 6514m

text: University of Chicago

text: live

text: Generic

text: Daubentonia madagascariensis

text: Dm 6514m


Cja 18906

text: University of Chicago

text: live

text: Generic

text: Callithrix jacchus

text: Cja 18906


Vvv 6513m

text: University of Chicago

text: live

text: Generic

text: Varecia variegata variegata

text: Vvv 6513m


Pvc 6399m

text: University of Chicago

text: live

text: Generic

text: Propithecus coquereli

text: Pvc 6399m


Dm 6262f

text: University of Chicago

text: live

text: Generic

text: Daubentonia madagascariensis

text: Dm 6262f


Ec 4525f

text: University of Chicago

text: live

text: Generic

text: Eulemur coronatus

text: Ec 4525f


Ptr YN07-147

text: University of Chicago

text: live

text: Generic

text: Pan troglodytes

text: Ptr YN07-147


Cae 06789

text: University of Chicago

text: live

text: Generic

text: Chlorocebus aethiops

text: Cae 06789


Vvv 586m

text: University of Chicago

text: live

text: Generic

text: Varecia variegata variegata

text: Vvv 586m


Dm 6725m

text: University of Chicago

text: live

text: Generic

text: Daubentonia madagascariensis

text: Dm 6725m


Cja 17060

text: University of Chicago

text: live

text: Generic

text: Callithrix jacchus

text: Cja 17060


Hsa 56655

text: University of Chicago

text: live

text: Generic

text: Homo sapiens

text: Hsa 56655


Mmu 17550

text: University of Chicago

text: live

text: Generic

text: Macaca mulatta

text: Mmu 17550


Mmu YN06-52

text: University of Chicago

text: live

text: Generic

text: Macaca mulatta

text: Mmu YN06-52


Ptr YN06-147

text: University of Chicago

text: live

text: Generic

text: Pan troglodytes

text: Ptr YN06-147


Em 5716m

text: University of Chicago

text: live

text: Generic

text: Eulemur mongoz

text: Em 5716m


Cja 270/17090

text: University of Chicago

text: live

text: Generic

text: Callithrix jacchus

text: Cja 270/17090


Ec 4524f

text: University of Chicago

text: live

text: Generic

text: Eulemur coronatus

text: Ec 4524f


Vvv 4598m

text: University of Chicago

text: live

text: Generic

text: Varecia variegata variegata

text: Vvv 4598m


Em 5717f

text: University of Chicago

text: live

text: Generic

text: Eulemur mongoz

text: Em 5717f


Cja 27565

text: University of Chicago

text: live

text: Generic

text: Callithrix jacchus

text: Cja 27565


Hsa 56720

text: University of Chicago

text: live

text: Generic

text: Homo sapiens

text: Hsa 56720


Dm 6261f

text: University of Chicago

text: live

text: Generic

text: Daubentonia madagascariensis

text: Dm 6261f


Pvc 6723f

text: University of Chicago

text: live

text: Generic

text: Propithecus coquereli

text: Pvc 6723f


Em 4504m

text: University of Chicago

text: live

text: Generic

text: Eulemur mongoz

text: Em 4504m


Ec 6035m

text: University of Chicago

text: live

text: Generic

text: Eulemur coronatus

text: Ec 6035m


Vvv 1501m

text: University of Chicago

text: live

text: Generic

text: Varecia variegata variegata

text: Vvv 1501m


Em 5719f

text: University of Chicago

text: live

text: Generic

text: Eulemur mongoz

text: Em 5719f


Cae 06471

text: University of Chicago

text: live

text: Generic

text: Chlorocebus aethiops

text: Cae 06471


Gsm 2001f

text: University of Chicago

text: live

text: Generic

text: Galago senegalensis

text: Gsm 2001f


Nc 1960m

text: University of Chicago

text: live

text: Generic

text: Nycticebus coucang

text: Nc 1960m


Pvc 6108f

text: University of Chicago

text: live

text: Generic

text: Propithecus coquereli

text: Pvc 6108f


Mouse 276016

text: University of Chicago

text: live

text: Generic

text: Mus musculus

text: Mouse 276016


Ec 6034m

text: University of Chicago

text: live

text: Generic

text: Eulemur coronatus

text: Ec 6034m


Gsm 3133f

text: University of Chicago

text: live

text: Generic

text: Galago senegalensis

text: Gsm 3133f


Nc 1949m

text: University of Chicago

text: live

text: Generic

text: Nycticebus coucang

text: Nc 1949m


Mouse 276023

text: University of Chicago

text: live

text: Generic

text: Mus musculus

text: Mouse 276023


Mdo L8148

text: University of Chicago

text: live

text: Generic

text: Monodelphis domestica

text: Mdo L8148


Mouse 277160

text: University of Chicago

text: live

text: Generic

text: Mus musculus

text: Mouse 277160


Gsm 3135m

text: University of Chicago

text: live

text: Generic

text: Galago senegalensis

text: Gsm 3135m


Mdo L7013

text: University of Chicago

text: live

text: Generic

text: Monodelphis domestica

text: Mdo L7013


Nc 1972f

text: University of Chicago

text: live

text: Generic

text: Nycticebus coucang

text: Nc 1972f


Gsm 2000m

text: University of Chicago

text: live

text: Generic

text: Galago senegalensis

text: Gsm 2000m


Mdo L4394

text: University of Chicago

text: live

text: Generic

text: Monodelphis domestica

text: Mdo L4394


Tbe M8182

text: University of Chicago

text: live

text: Generic

text: Tupaia belangeri

text: Tbe M8182


Mouse 276025

text: University of Chicago

text: live

text: Generic

text: Mus musculus

text: Mouse 276025


Nc 961m

text: University of Chicago

text: live

text: Generic

text: Nycticebus coucang

text: Nc 961m


Mdo L9211

text: University of Chicago

text: live

text: Generic

text: Monodelphis domestica

text: Mdo L9211


Dno 9-29

text: University of Chicago

text: live

text: Generic

text: Dasypus novemcinctus

text: Dno 9-29


Dno 9-35

text: University of Chicago

text: live

text: Generic

text: Dasypus novemcinctus

text: Dno 9-35


Tbe F7498

text: University of Chicago

text: live

text: Generic

text: Tupaia belangeri

text: Tbe F7498


Tbe M8174

text: University of Chicago

text: live

text: Generic

text: Tupaia belangeri

text: Tbe M8174


Tbe M8002

text: University of Chicago

text: live

text: Generic

text: Tupaia belangeri

text: Tbe M8002


Switchgrass cv Summer Crown Tissue

text: USDA-ARS

text: live

text: Generic

text: Panicum virgatum

text: Switchgrass cv Summer Crown Tissue


text: College of Agriculture & Biotechnology, Zhejiang University

text: live

text: Generic

text: two true-leaf stage

characteristic: development stage

text: self-grafted

characteristic: growth condition

text: Citrullus lanatus

text: watermelon

text: L. cv. IVSM9

text: the part above cotyledons

characteristic: tissue

text: microRNA form self-grafted watermelon


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: two true-leaf stage

text: grafted onto bottle gourd

text: Citrullus lanatus

text: watermelon

text: L. cv. IVSM9

text: the part above cotyledons

text: microRNA form watermelon grafted onto bottle gourd


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: two true-leaf stage

text: grafted onto squash

text: Citrullus lanatus

text: watermelon

text: L. cv. IVSM9

text: the part above cotyledons

text: microRNA form watermelon grafted onto squash


text: Equipe SP@RTE, UMR CNRS 6290, Université de Rennes 1

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody lot

text: Abcam

characteristic: antibody vendor

characteristic: background strain

characteristic: cell line

text: embryonal carcinoma cells

characteristic: cell type

characteristic: ip antibody

text: Mus musculus

characteristic: organism

text: Untreated P19.6 cells, H3K27ac ChIP

text: H3K27ac ChIP-seq in P19.6 cells


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Abcam

text: embryonal carcinoma cells

text: Mus musculus

text: RA-treated P19.6 cells, H3K27ac ChIP

text: H3K27ac ChIP-seq in RA-treated P19.6 cells

characteristic: title

text: all-trans retinoic acid (RA)

characteristic: treatment

characteristic: treatment dosage

text: 48 hours

characteristic: treatment duration


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: embryonal carcinoma cells

text: Mus musculus

text: Untreated P19.6 cells, input

text: Input-seq in P19.6 cells


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: embryonal carcinoma cells

text: Mus musculus

text: RA-treated P19.6 cells, input

text: Input-seq in RA-treated P19.6 cells

text: all-trans retinoic acid (RA)

text: 48 hours


text: ENCODE DCC

text: live

text: Generic

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Dr. Darrell Bigner at Duke University Medical Center

characteristic: biomaterial provider

text: glioblastoma, these cells (aka H54 and D54) come from a surgical resection from a patient with glioblastoma multiforme (WHO Grade IV). D54 is a commonly studied glioblastoma cell line (Bao et al., 2006) that has been thoroughly described by S Bigner (1981). (PMID: 7252524)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: U

characteristic: cell sex

text: Gliobla/Input

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: fseq v 1.84

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: Gliobla

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: ChipSeq

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_GM12878,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: rabbit polyclonal

text: Rabbit polyclonal. Antibody Target: CTCF

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

text: Millipore

text: Lonza

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

text: Homo sapiens

text: tier 1

text: NHEK


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: RNA Polymerase II

text: Covance

text: ATCC

text: ectoderm

characteristic: cell lineage

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_HelaS3,p-value cutoff: 0.05,1% ENCODE array platform validation tests

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin

characteristic: antibody antibodydescription

text: Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: WiCell Research Institute

text: ChipSeq

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.01,fseq v 1.84, iff_generic_male

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: mouse monoclonal, clone 8WG16

text: RNA Polymerase II

text: Covance

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_K562

text: Homo sapiens

text: tier 1

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Millipore

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: Homo sapiens

text: tier 1

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Coriell

text: ChipSeq

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: rabbit polyclonal

text: Millipore

text: Lonza

characteristic: biomaterial provider

text: HUVEC/Input

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_HUVEC

text: Homo sapiens

text: tier 1

text: HUVEC

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Lonza

text: umbilical vein endothelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: U

characteristic: cell sex

text: HUVEC/Input

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: fseq v 1.84

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: HUVEC

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Input

text: ATCC

characteristic: biomaterial provider

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

text: ectoderm

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: fseq v 1.84

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

text: hepatocellular carcinoma

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_HepG2,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal. Antibody Target: CTCF

text: Millipore

text: ATCC

text: ectoderm

characteristic: cell lineage

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: ectoderm

text: ChipSeq

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.01,fseq v 1.84, iff_HelaS3,1% ENCODE array platform validation tests

text: Homo sapiens

characteristic: organism

text: tier 1


text: ENCODE DCC

text: live

text: Generic

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: RNA Polymerase II

text: Covance

text: ATCC

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: fseq v 1.84, iff_A549,baseAlignCounts.pl v 1,p-value cutoff: 0.05

text: Homo sapiens

text: tier 1

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: Millipore

text: ATCC

characteristic: biomaterial provider

text: ChipSeq

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,fseq v 1.84, iff_GM12878,p-value cutoff: 0.001

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,p-value cutoff: 0.01,fseq v 1.84, iff_HepG2,1% ENCODE array platform validation tests

text: Homo sapiens

text: tier 1

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: F

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: fseq v 1.84

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Input

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

text: mesoderm

text: F

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: fseq v 1.84,Illumina

text: Homo sapiens

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA Polymerase II

text: Covance

text: ATCC

characteristic: biomaterial provider

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: S. Heimfeld Laboratory, FHCRC

characteristic: cell

text: Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis

text: mesoderm

characteristic: cell lineage

text: F

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: fseq v 1.84

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: CTCF

text: rabbit polyclonal

characteristic: antibody antibodydescription

text: Rabbit polyclonal. Antibody Target: CTCF

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: WiCell Research Institute

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: Lonza

characteristic: biomaterial provider

text: HUVEC/Input

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1,p-value cutoff: 0.01,fseq v 1.84, iff_HUVEC

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1

text: HUVEC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: antibody antibodydescription

text: Millipore

text: Coriell

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

text: Homo sapiens

text: tier 1

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

text: mouse monoclonal, clone 8WG16

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: WiCell Research Institute

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: c-Myc

characteristic: antibody

text: Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: ChipSeq

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1

text: vehicle

characteristic: treatment

text: Charcoal stripped hormone-free FBS for 72 hours (Crawford)


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: antibody antibodydescription

text: mouse monoclonal, clone 8WG16

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

text: Dr. Darrell Bigner at Duke University Medical Center

text: Gliobla/Input

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_H54,p-value cutoff: 0.05

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

text: Gliobla

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: rabbit polyclonal

text: Millipore

characteristic: antibody vendorname

text: Gliobla/Input

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: Gliobla

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: c-Myc

characteristic: antibody

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1

text: estrogen

characteristic: treatment

text: 45 min with 100 nM Estradiol (Crawford)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

text: ATCC

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: mouse monoclonal, clone 8WG16

text: RNA Polymerase II

text: Covance

characteristic: antibody vendorname

text: Lonza

text: HUVEC/Input

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_HUVEC

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: HUVEC

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: fseq v 1.84

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

text: rabbit polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

characteristic: title

text: vehicle

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal

text: Millipore

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: estrogen

text: 45 min with 100 nM Estradiol (Crawford)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.01,1% ENCODE array platform validation tests,fseq v 1.84, iff_K562

text: Homo sapiens

characteristic: organism

text: tier 1

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal

text: Rabbit polyclonal. Antibody Target: CTCF

text: Millipore

text: ATCC

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_K562

text: Homo sapiens

text: tier 1

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

text: Millipore

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_GM12878,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: F

characteristic: cell sex

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Illumina, pooled,fseq v 1.84

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

text: ATCC

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: M

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Illumina, pooled,fseq v 1.84

characteristic: labversion

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: title