characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: IgG-mus

text: MEL/None/Input/IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

text: MEL

text: Unknown strain origin

characteristic: strain description

characteristic: title

characteristic: treatment description


status: PUBLIC

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized

tag: attribute

text: Immortal cells

text: Input

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: MEL/None/Input/IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: MEL

text: Unknown strain origin

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

characteristic: antibody antibodydescription

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

characteristic: strain

text: Derived by inbreeding from selected F2 progeny of B10.A X B10.129

characteristic: strain description

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Anti-GATA-1 rabbit polyclonal antibody was generated by using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1

text: GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells.

text: Donated by Dr. E.H. Bresnick, UW Madison

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rat

characteristic: control

text: Input signal from Normal Rat IgG ChIP-seq

characteristic: control description

text: MEL/None/Input/IgG-rat

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: MEL

text: Unknown strain origin


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Max

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

characteristic: antibody antibodydescription

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

characteristic: strain

characteristic: strain description

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Goat polyclonal, epitope mapping near the C-terminus of CTCF of human origin. Antibody Target: CTCF

text: Transcriptional regulator with 11 highly conserved zinc finger domains. Depending on context, can bind a histone acetyltransferase (HAT)-containing complex and function as transcriptional activator or bind a histone deacetylase (HDAC)-containing complex and function as transcriptional repressor. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation. Can dimerize, mediating long-range chromatin looping. When bound to chromatin, provides an anchor point for nucleosomes positioning. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites.

text: Santa Cruz Biotech

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: Stanford_ChipSeq_CH12_CTCF_(SC-15914)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: Mouse monoclonal. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2

characteristic: antibody antibodydescription

text: Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3').

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

characteristic: strain

characteristic: strain description

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal. Antibody Target: RAD21

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

text: Abcam

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: rabbit polyclonal. Antibody Target: E2F4

characteristic: antibody antibodydescription

text: mapping at the C-terminus of E2F4 of human origin

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

characteristic: strain

characteristic: strain description

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized

text: Immortal cells

text: TBP

text: Mouse monoclonal. Immunogen is synthetic peptide conjugated to KLH derived from within residues 1 - 100 of HumanTATA binding protein TBP. Antibody Target: TBP

text: General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription.

text: abcam

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

text: MEL/None/Input/IgG-mus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: MEL

text: Unknown strain origin


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: IgG-rab

text: MEL/None/Input/IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

text: MEL

text: Unknown strain origin

characteristic: strain description

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized

text: Immortal cells

text: JunD

text: rabbit polyclonal IgG. Antibody Target: JunD

text: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

text: Santa Cruz Biotech

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: MEL/None/Input/IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: replicate

text: MEL

text: Unknown strain origin


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: std

text: Standard input signal for most experiments.

text: MEL/None/Input/std

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

text: MEL

text: Unknown strain origin

characteristic: strain description

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Input

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

text: Mus musculus

characteristic: strain

text: Derived by inbreeding from selected F2 progeny of B10.A X B10.129

text: Stanford_ChipSeq_CH12_Input_IgG-rab (superseded by GSE136427)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: organism

characteristic: replicate

characteristic: strain description

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Max

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

characteristic: antibody antibodydescription

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: MEL/None/Input/IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

text: Mus musculus

text: MEL

text: Unknown strain origin

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the N-terminus of p300 of human origin. Antibody Target: P300

text: Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein

text: Santa Cruz Biotech

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: organism

characteristic: replicate

characteristic: strain

characteristic: strain description

text: Stanford_ChipSeq_CH12_p300_(SC-584)_IgG-rab

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit Polyclonal. Antibody Target: P300

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: MEL/None/Input/IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

text: Mus musculus

text: MEL

text: Unknown strain origin

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: Rabbit polyclonal, maps to a region between residues 350 and the C-terminus (residue 412). Antibody Target: BHLHE40

text: This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differentiation.

text: Novus

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: organism

characteristic: replicate

characteristic: strain

characteristic: strain description

text: Stanford_ChipSeq_CH12_BHLHE40_(NB100-1800)_IgG-rab

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal raised against synthetic peptide representing a portion within the last 100 amino acids of the human Structural Maintenance of Chromosomes-3 conjugated to KLH. Antibody Target: SMC3

characteristic: antibody antibodydescription

text: Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: MEL/None/Input/IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

text: Mus musculus

text: MEL

text: Unknown strain origin

text: Stanford_ChipSeq_MEL_SMC3_(ab9263)_IgG-rab

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: NELFe

characteristic: antibody

text: NELFe (RDBP). Antibody Target: NELFe

text: NELFe (RDBP) is a part of the negative elongation factor complex which binds to RNAPII to suppress elongation.

text: Santa Cruz Biotech

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: organism

characteristic: replicate

characteristic: strain

characteristic: strain description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1

characteristic: antibody antibodydescription

text: Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: R&D Systems

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

text: Mus musculus

text: Derived by inbreeding from selected F2 progeny of B10.A X B10.129

text: Stanford_ChipSeq_CH12_Mxi1_(AF4185)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: Rabbit polyclonal to CHD2 Synthetic peptide derived from within residues 1250 - 1350 of Human CHD2. Antibody Target: CHD2

text: CHD family of proteins are characterized by presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template.

text: Abcam

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: organism

characteristic: replicate

characteristic: strain

characteristic: strain description

text: Stanford_ChipSeq_CH12_CHD2_(AB68301)_IgG-rab

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal against peptide conjugated to KLH derived from within residues 1600 - 1700 of S. cerevisiae RNA polymerase II CTD repeat YSPTSPS, phosphorylated at S2. Antibody Target: POL2S2

characteristic: antibody antibodydescription

text: RNA polymerase II, large subunit- specific for phosphorylated C-terminal domain.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: MEL/None/Input/IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

text: Mus musculus

text: MEL

text: Unknown strain origin

text: Stanford_ChipSeq_MEL_Pol2(phosphoS2)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: R&D Systems

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: MEL/None/Input/IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: organism

characteristic: replicate

text: MEL

text: Unknown strain origin

characteristic: strain description

text: Stanford_ChipSeq_MEL_Mxi1_(AF4185)_IgG-rab

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: immortalized

text: Immortal cells

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: MEL/None/Input/IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

text: Mus musculus

text: MEL

text: Unknown strain origin

text: Stanford_ChipSeq_MEL_CHD2_(AB68301)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: Rabbit polyclonal raised against synthetic peptide representing a portion within the last 100 amino acids of the human Structural Maintenance of Chromosomes-3 conjugated to KLH. Antibody Target: SMC3

text: Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication.

text: Abcam

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: organism

characteristic: replicate

characteristic: strain

characteristic: strain description

text: Stanford_ChipSeq_CH12_SMC3_(ab9263)_IgG-rab

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

text: Mus musculus

text: Stanford_ChipSeq_CH12_Pol2(phosphoS2)_IgG-rab

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: NELFe

characteristic: antibody

text: NELFe (RDBP). Antibody Target: NELFe

text: NELFe (RDBP) is a part of the negative elongation factor complex which binds to RNAPII to suppress elongation.

text: Santa Cruz Biotech

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: IgG-rab

text: MEL/None/Input/IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: organism

characteristic: replicate

text: MEL

text: Unknown strain origin

characteristic: strain description

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal. Antibody Target: RAD21

characteristic: antibody antibodydescription

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: MEL/None/Input/IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

text: Mus musculus

text: MEL

text: Unknown strain origin

text: Stanford_ChipSeq_MEL_Rad21_DMSO_2.0pct_IgG-rab

characteristic: treatment

text: 5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

characteristic: antibody antibodydescription

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: IgG-rab

text: MEL/None/Input/IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: organism

characteristic: replicate

text: MEL

text: Unknown strain origin

characteristic: strain description

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: MEL/None/Input/IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

text: Mus musculus

text: MEL

text: Unknown strain origin

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: IgG-Yale

text: Input signal from Mouse IgG ChIP-seq prepared at Yale

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale-m

text: Weissman - Yale University

characteristic: lab description

text: Mus musculus

characteristic: organism

text: MEL

text: Unknown strain origin

characteristic: strain description

text: Yale_ChipSeq_MEL_Input_DMSO_2.0pct_IgG-Yale

characteristic: title

characteristic: treatment


characteristic: External Id

text: Neurogenetics, Nagoya University Graduate School of Medicine

characteristic: INSDC center name

text: live

text: Generic

text: ant-FUS mouse monoclonal

text: Santa Cruz

characteristic: antibody manufacturer

text: wild type

characteristic: genotype

text: Mus musculus

text: cerebrum

characteristic: strain

text: cerebrum

characteristic: tissue

text: FUS-CLIP cerebrum


text: DBI, Plant and Soil Sciences, University of Delaware

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Kinmaze

characteristic: cultivar

text: waf1-1 mutant

characteristic: genotype/variation

text: Oryza sativa Japonica Group

text: leaf, waf1-1 mutant

text: leaf

text: Rice waf1-1 mutant


text: live

text: Generic

characteristic: SRA accession

text: Kinmaze

text: wild type

text: Oryza sativa Japonica Group

characteristic: organism

text: leaf, WT

text: leaf

text: Control for waf1-1 mutant


text: live

text: Generic

text: Kinmaze

text: waf1-2 mutant

text: Oryza sativa Japonica Group

text: leaf, waf1-2 mutant

text: leaf

text: Rice waf1-2 mutant

characteristic: title


characteristic: External Id

text: live

text: Generic

text: Kinmaze

text: wild type

text: Oryza sativa Japonica Group

text: leaf, WT

text: leaf

text: Control for waf1-2 mutant


characteristic: INSDC center name

text: live

text: Generic

text: Dongjin

text: oshen1-3 mutant

text: Oryza sativa

text: leaf, oshen1-3 mutant

text: leaf

text: Rice oshen1-3 mutant


text: live

text: Generic

text: Dongjin

text: wild type

text: Oryza sativa

text: leaf, WT

text: leaf

text: WT control for oshen1-3 mutant


text: live

text: Generic

text: Dongjin

text: Oryza sativa

text: leaf

text: leaf

text: Segregating heterozygotes control for oshen1-3 mutant


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: 50.000 N 145.000 W

text: Generic

text: Microbial community structure in the oxygen minimum zone of the Northeast subarctic Pacific Ocean

characteristic: description

characteristic: id

text: marine metagenome

text: ACACGACGGGCGGTGTGTRC

characteristic: primer

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: ACGTCACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: AGTGTACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: CACAGACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: CGTACACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: CTACTACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: TACGTACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: TAGAGACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: TCATCACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: TCTATACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: TGCTGACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: TGTAGACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: Generic

characteristic: genotype

text: mostly K55

characteristic: inbred line

characteristic: modifiers

text: Zea mays

text: Pl'/Pl'

characteristic: pl alleles

text: developing cobs (4 cm in length), rmr2-1 (mutant)

text: developing cobs

characteristic: tissue

text: rmr2-1 (mutant)

text: rmr2-1/rmr2-1 (mutant)

characteristic: variation


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: mostly K55

text: Zea mays

text: Pl'/Pl'

text: developing cobs (4 cm in length), Rmr2/rmr2-1 (non-mutant)

text: developing cobs

text: Rmr2/rmr2-1 (non-mutant)

text: Rmr2/rmr2-1 (non-mutant)


characteristic: External Id

text: The Institute of Physical and Chemical Research (RIKEN)

text: live

text: Generic

text: sub-species: carnica

text: 2 days old

characteristic: dev-stage

text: Apis mellifera carnica

characteristic: organism

text: whole body

characteristic: tissue-type

text: Apis mellifera carnica whole body 2 days old

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: sub-species: carnica

characteristic: description

text: 3 days old

text: Apis mellifera carnica

text: whole body

text: Apis mellifera carnica whole body 3 days old


text: live

text: Generic

text: sub-species: carnica

text: 5 days old

text: Apis mellifera carnica

text: whole body

text: Apis mellifera carnica whole body 5 days old


text: live

text: Generic

text: sub-species: carnica

text: 2 days old and 3 days old

text: Apis mellifera carnica

text: whole body

text: Apis mellifera carnica whole body 2 days old and 3 days old


text: National Institute of Fruit Tree Science

text: live

text: Generic

text: green leaf

text: Pyrus pyrifolia

text: leaf

text: Japanese pear 'Housui' cDNA library green leaf


text: live

text: Generic

text: overmature

text: Pyrus pyrifolia

text: fruit

text: Japanese pear 'Housui' cDNA library overmature fruit


text: live

text: Generic

text: immature

text: Pyrus pyrifolia

text: green leaf

text: Japanese pear 'Housui' cDNA library immature green leaf


text: The Salk Institute for Biological Studies

text: live

text: Generic

text: T-DNA insertions are identified by TDNA-Seq, a method for next-generation sequencing in which pools of T-DNA lines can be sequenced in parallel and then de-convoluted based on their pooling pattern to assign T-DNA insertions back to their originating seed line. To set up the pools, a large numbers of individual TDNA insertion seed lines (10,000) are given a unique four digit number (0000-9999). Based on this identifier a line is placed into one of ten pools (1-10) in each of four superpool sets (plate, row, column and number). All 40 pools (4 superpools x 10 pools) are separately sequenced using a method to enrich for T-DNA/genomic junctions. A T-DNA identified in all four superpools is the unique identifier of the seed line which contained that insert.

text: Arabidopsis thaliana

text: Columbia 0

characteristic: strain

text: Arabidopsis thaliana TDNA insertion lines - TDNA_seq


text: DBI, Plant and Soil Sciences, University of Delaware

text: live

text: Generic

characteristic: SRA accession

characteristic: ecotype/background

text: wild type

characteristic: genotype/variation

text: Arabidopsis thaliana

text: WT (eco Columbia) flowers

text: flowers


characteristic: INSDC first public

text: live

text: Generic

text: ago4-4 mutant

text: Arabidopsis thaliana

text: ago4-4 flowers

text: flowers

characteristic: tissue


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: drm2-2 mutant

text: Arabidopsis thaliana

text: drm2-2 flowers

text: flowers


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: nrpe1-11 mutant

text: Arabidopsis thaliana

text: nrpe1-11 flowers

text: flowers


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission package

text: idn2-1 mutant

text: Arabidopsis thaliana

text: idn2-1 flowers

text: flowers


text: live

text: Generic

text: idnl1-1 idnl2-1 mutant

text: Arabidopsis thaliana

characteristic: organism

text: idnl1-1 idnl2-1 double mutant flowers

text: flowers


text: live

text: Generic

text: idn2-1 idnl1-1 idnl2-1 mutant

text: Arabidopsis thaliana

text: idn2 idnl1-1 idnl2-1 triple mutant flowers

text: flowers


Crab

text: Chinese National Human Genome Center at Shanghai

text: live

text: Generic

text: Portunus trituberculatus

text: Denovo sequencing and analysis of the Portunus trituberculatus hepatopancreas and transcriptome using a 454 sequencing platform to discover putative genes involved in ovary development


text: University of Bergen/Dept. of Biology

text: live

text: Generic

text: Gravity-core in the CNO3 pockmark at the Nyegga cold seeps

text: sediment metagenome

text: A fine-scale view into microbial community structures affiliated with high versus low methane flux in Nyegga sediments


AgaSubgDNA

text: INRA

text: live

text: Generic

text: Agaricus subrufescens

text: Agaricus subrufescens genomic DNA


mouse neural progenitors

text: Adam Mickiewicz University in Poznan

text: live

text: Generic

text: The sample contain the small RNAs isolated from mouse neural progenitor cells

text: Mus musculus

text: Non-coding RNAs in neural embryonic stem cell differentiation - neural progenitor cells


neural cells

text: Adam Mickiewicz University in Poznan

text: live

text: Generic

text: The sample contain the small RNAs isolated from mouse differentiated neural cells

text: Mus musculus

text: Non-coding RNAs in neural embryonic stem cell differentiation - differentiated neural cells


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: Control

characteristic: agent

text: Homo sapiens

characteristic: patient

text: Parathyroid adenoma

characteristic: time

text: Parathyroid tumor

text: Control 24h - Adenoma 1


text: Science for Life Laboratory Stockholm

characteristic: INSDC center name

text: live

text: Generic

text: Control

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: Control 48h - Adenoma 1

characteristic: title


text: Science for Life Laboratory Stockholm

text: live

text: Generic

characteristic: SRA accession

text: DPN

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: DPN 24h - Adenoma 1


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: DPN

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: DPN 48h - Adenoma 1


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: OHT

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: OHT 24h - Adenoma 1


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: OHT

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: OHT 48h - Adenoma 1


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: Control

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: Control 24h - Adenoma 2


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: Control

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: Control 48h - Adenoma 2


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: DPN

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: DPN 24h - Adenoma 2


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: DPN

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: DPN 48h - Adenoma 2


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: OHT

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: OHT 24h - Adenoma 2


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: OHT

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: OHT 48h - Adenoma 2


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: Control

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: Control 24h - Adenoma 3


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: Control

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: Control 48h - Adenoma 3


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: DPN

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: DPN 24h - Adenoma 3


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: DPN

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: DPN 48h - Adenoma 3


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: OHT

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: OHT 24h - Adenoma 3


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: OHT

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: OHT 48h - Adenoma 3


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: Control

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: Control 48h - Adenoma 4


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: DPN

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: DPN 24h - Adenoma 4


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: DPN

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: DPN 48h - Adenoma 4


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: OHT

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: OHT 24h - Adenoma 4


text: Science for Life Laboratory Stockholm

text: live

text: Generic

text: OHT

text: Homo sapiens

text: Parathyroid adenoma

text: Parathyroid tumor

text: OHT 48h - Adenoma 4


text: John N. Anderson, Biological Sciences, Purdue University

text: live

text: Generic

text: RP11-89D11, RP11-440N18, RP11-980A6

characteristic: bac clone source

text: Unmethylated

characteristic: methylation status

text: Homo sapiens

text: Human Unmethylated Nucleosome

text: Human Unmethylated Nucleosome Sample R1


characteristic: INSDC first public

text: live

text: Generic

text: RP11-89D11, RP11-440N18, RP11-980A6

text: Unmethylated

text: Homo sapiens

text: Human Unmethylated Nucleosome

text: Human Unmethylated Nucleosome Sample R2


text: live

text: Generic

text: RP11-89D11, RP11-440N18, RP11-980A6

text: Unmethylated

text: Homo sapiens

text: Human Unmethylated Nucleosome

text: Human Unmethylated Nucleosome Sample R3


text: live

text: Generic

text: RP11-89D11, RP11-440N18, RP11-980A6

text: Methylated

text: Homo sapiens

text: Human Methylated Nucleosome

text: Human Methylated Nucleosome Sample R1


text: live

text: Generic

text: RP11-89D11, RP11-440N18, RP11-980A6

text: Methylated

text: Homo sapiens

text: Human Methylated Nucleosome

text: Human Methylated Nucleosome Sample R2


text: live

text: Generic

text: RP11-89D11, RP11-440N18, RP11-980A6

text: Unmethylated

text: Homo sapiens

text: Human Unmethylated MNase Control

text: Human Unmethylated MNase Control Sample


text: live

text: Generic

text: RP11-89D11, RP11-440N18, RP11-980A6

text: Unmethylated

text: Homo sapiens

text: Human Unmethylated Sonicated Control

text: Human Unmethylated Sonicated Control Sample


text: live

text: Generic

text: RP23-51O13, RP23-302D24, RP23-67F18

text: Unmethylated

text: Mus musculus

text: Mouse Unmethylated Nucleosome

text: Mouse Unmethylated Nucleosome Sample R1


text: live

text: Generic

text: RP23-51O13, RP23-302D24, RP23-67F18

text: Unmethylated

text: Mus musculus

text: Mouse Unmethylated Nucleosome

text: Mouse Unmethylated Nucleosome Sample R2


text: live

text: Generic

text: RP23-51O13, RP23-302D24, RP23-67F18

text: Methylated

text: Mus musculus

text: Mouse Methylated Nucleosome

text: Mouse Methylated Nucleosome Sample R1


text: live

text: Generic

text: RP23-51O13, RP23-302D24, RP23-67F18

text: Methylated

text: Mus musculus

text: Mouse Methylated Nucleosome

text: Mouse Methylated Nucleosome Sample R2


text: live

text: Generic

text: RP23-51O13, RP23-302D24, RP23-67F18

text: Unmethylated

text: Mus musculus

text: Mouse Unmethylated MNase Control

text: Mouse Unmethylated MNase Control Sample


text: live

text: Generic

text: RP23-51O13, RP23-302D24, RP23-67F18

text: Methylated

text: Mus musculus

text: Mouse Methylated MNase Control

text: Mouse Methylated MNase Control Sample


text: live

text: Generic

text: RP23-51O13, RP23-302D24, RP23-67F18

text: Unmethylated

text: Mus musculus

text: Mouse Unmethylated Sonicated Control

text: Mouse Unmethylated Sonicated Control Sample


text: INTEGRATIVE IMMUNOBIOLOGY UNIT, LABORATORY OF IMMUNOLOGY, NIAID

text: live

text: Generic

text: primary CD4+ T cells

characteristic: cell type

characteristic: genotype/variation

text: Mus musculus

text: in vitro polarized CD4+ Th17 cells

characteristic: strain

text: miR-155+/+ Th17


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary CD4+ T cells

text: Mus musculus

text: in vitro polarized CD4+ Th17 cells

text: miR-155-/- Th17


characteristic: External Id

text: LMI, NHLBI, NIH

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Clontech, 632460

characteristic: antibody

text: Quiescent B cells

text: Mus musculus

text: Quiescent B cells, lipopolysaccharide (LPS) treatment for 4hrs

text: spleen

characteristic: tissue


text: LMI, NHLBI, NIH

characteristic: INSDC center name

text: live

text: Generic

text: Santa Cruz SC-2025

text: Quiescent B cells

text: Mus musculus

characteristic: organism

text: spleen


text: LMI, NHLBI, NIH

text: live

text: Generic

characteristic: SRA accession

text: Clontech, 632460

text: Resting T cells

text: Mus musculus

text: Resting T cells, conconavalin A (conA) activation for 4hrs

text: spleen

characteristic: title


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Santa Cruz SC-2025

text: Resting T cells

text: Mus musculus

text: spleen


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Clontech, 632460

text: Resting T cells

text: Mus musculus

text: Resting T cells, conconavalin A (conA) activation for 14hrs

text: spleen


text: LMI, NHLBI, NIH

text: live

text: Generic

text: Santa Cruz SC-2025

text: Resting T cells

text: Mus musculus

text: spleen


text: Medical Faculty Carl Gustav Carus, Institute of Immunology

text: live

text: Generic

text: 22 weeks

characteristic: age

text: SAMHD1 KO

text: Mus musculus

text: male

characteristic: sex

text: mouse peritoneal macrophages

text: ko macrophages #1


characteristic: INSDC first public

text: live

text: Generic

text: 25 weeks

text: WT

text: Mus musculus

text: male

text: mouse peritoneal macrophages

text: wt macrophages #1


text: live

text: Generic

text: 15 weeks

text: SAMHD1 KO

characteristic: genotype/variation

text: Mus musculus

text: male

text: mouse peritoneal macrophages

text: ko macrophages #2


text: live

text: Generic

text: 21 weeks

text: WT

text: Mus musculus

text: male

text: mouse peritoneal macrophages

characteristic: strain

text: wt macrophages #2


characteristic: INSDC last update

text: live

text: Generic

text: 13 weeks

text: SAMHD1 KO

text: Mus musculus

text: male

text: mouse peritoneal macrophages

text: ko macrophages #3


characteristic: INSDC secondary accession

text: live

text: Generic

text: 10 weeks

text: WT

text: Mus musculus

text: male and female

text: mouse peritoneal macrophages

text: wt macrophages #3


text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: Generic

text: Dictyochloropsis reticulata

characteristic: description

text: Symbiochloris reticulata

characteristic: sample number

text: Generic sample from Dictyochloropsis reticulata


characteristic: External Id

text: Rosbash, Biology, Brandeis University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 3-4 days

text: Drosophila melanogaster

text: head gDNA

text: yellow white (yw)

text: head


text: Rosbash, Biology, Brandeis University

characteristic: INSDC center name

text: live

text: Generic

text: 3-4 days

text: Drosophila melanogaster

text: head, ZT2, nascent RNA

text: yellow white (yw)

characteristic: time point

text: head

characteristic: tissue


text: Rosbash, Biology, Brandeis University

text: live

text: Generic

characteristic: SRA accession

text: 3-4 days

text: Drosophila melanogaster

characteristic: organism

text: head, ZT6, nascent RNA

text: yellow white (yw)

text: head

characteristic: title


text: Rosbash, Biology, Brandeis University

characteristic: INSDC first public

text: live

text: Generic

text: 3-4 days

characteristic: age

text: Drosophila melanogaster

text: head, ZT10, nascent RNA

text: yellow white (yw)

text: head


text: Rosbash, Biology, Brandeis University

text: live

text: Generic

text: 3-4 days

text: Drosophila melanogaster

text: head, ZT14, nascent RNA

text: yellow white (yw)

characteristic: strain

text: head


text: Rosbash, Biology, Brandeis University

characteristic: INSDC last update

text: live

text: Generic

text: 3-4 days

text: Drosophila melanogaster

text: head, ZT18, nascent RNA

text: yellow white (yw)

text: head


text: Rosbash, Biology, Brandeis University

characteristic: INSDC secondary accession

text: live

text: Generic

text: 3-4 days

text: Drosophila melanogaster

text: head, ZT22, nascent RNA

text: yellow white (yw)

text: head


text: Rosbash, Biology, Brandeis University

text: live

characteristic: INSDC status

text: Generic

text: 3-4 days

text: male

characteristic: gender

text: Drosophila melanogaster

text: head, yw, nascent RNA

text: yellow white (yw)

text: head


text: Rosbash, Biology, Brandeis University

text: live

text: Generic

text: 3-4 days

text: male

text: Drosophila melanogaster

text: head, FM7a, nascent RNA

text: head


text: Rosbash, Biology, Brandeis University

text: live

text: Generic

text: 3-4 days

text: male

text: Drosophila melanogaster

text: head, ADAR0, nascent RNA

text: head


text: DOE Joint Genome Institute

text: live

text: Generic

text: Pelagophyceae sp. CCMP2097

characteristic: description

text: Pelagophyceae sp. CCMP2097

characteristic: sample number

text: Generic sample from Pelagophyceae sp. CCMP2097


characteristic: External Id

text: University of Padova

text: live

text: Generic

characteristic: NCBI submission model

text: PI 426314

characteristic: cultivar

text: 12 days-old plants

characteristic: dev-stage

text: Brassica juncea

text: root

characteristic: tissue-type

text: Brassica juncea roots exposed to Cr for 24 h Library


text: NRC on Plant Biotechnology

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: Kharchia Local

text: PCR-Select cDNA Subtraction Method (Clontech laboratories, Inc., Palo Alto, CA, USA)

text: seedling stage

text: E.coli DH5 alpha

characteristic: lab-host

text: Triticum aestivum

text: EcoRI

text: EcoRI

text: leaf

text: Triticum aestivum cv. Kharchia Local salt stress inducible suppression subtractive hybridization (SSH) library

text: Plasmid

text: pGEM-T vector (Promega)

characteristic: vector


text: Washington and Lee University

characteristic: INSDC first public

text: live

text: Generic

text: adult females

text: Latrodectus geometricus

characteristic: organism

text: female

characteristic: sex

text: San Diego, CA

text: silk glands

text: Latrodectus geometricus silk gland cDNA library

characteristic: title

text: plasmid


text: dbGaP

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: DS-BMF

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: male

text: Mendelian

characteristic: study design

text: Anemia, Dyserythropoietic, Congenital

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from a human male participant in the dbGaP study Biology and Molecular Analysis of Human Hematopoiesis Genetics


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: DS-BMF

text: SNP Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Mendelian

text: Anemia, Dyserythropoietic, Congenital

text: Biology and Molecular Analysis of Human Hematopoiesis Genetics

text: Yes


text: dbGaP

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: DS-BMF

text: SNP Genotypes (NGS)

text: Homo sapiens

text: female

text: Mendelian

text: Anemia, Dyserythropoietic, Congenital

text: Yes

text: DNA sample from a human female participant in the dbGaP study Biology and Molecular Analysis of Human Hematopoiesis Genetics

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

text: DS-BMF

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: female

text: Mendelian

characteristic: study design

text: Anemia, Dyserythropoietic, Congenital

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

text: BS


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: DS-BMF

text: SNP Genotypes (NGS)

text: Homo sapiens

text: male

text: Mendelian

text: Anemia, Dyserythropoietic, Congenital

text: Yes

text: DMcD-LCL

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: GRU

text: SNP Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Mendelian

text: Hypogonadism

text: Yes

text: DNA sample from a human male participant in the dbGaP study The Molecular Basis of Inherited Reproductive Disorders


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: FRD

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: female

text: Mendelian

characteristic: study design

text: Hypophosphatemia, Familial

characteristic: study disease

characteristic: study name

text: Yes

text: DNA sample from a human female participant in the dbGaP study Genetic Defects in Familial Renal Disorders

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: FRD

text: SNP Genotypes (NGS)

text: Homo sapiens

text: female

text: Mendelian

text: Hypophosphatemia, Familial

text: Genetic Defects in Familial Renal Disorders

text: Yes

characteristic: subject is affected

characteristic: submitted sample id


text: dbGaP

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: FRD

text: SNP Genotypes (NGS)

text: Homo sapiens

text: male

text: Mendelian

text: Hypophosphatemia, Familial

text: Yes

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from a human male participant in the dbGaP study Genetic Defects in Familial Renal Disorders


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: FRD

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Mendelian

characteristic: study design

text: Hypophosphatemia, Familial

characteristic: study disease

text: Yes

text: AP


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: FRD

text: SNP Genotypes (NGS)

text: Homo sapiens

text: male

text: Mendelian

text: Hypophosphatemia, Familial

characteristic: study name

text: Yes

text: Aki

characteristic: title


text: dbGaP

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: FRD

text: SNP Genotypes (NGS)

text: Homo sapiens

text: female

text: Mendelian

text: Hypophosphatemia, Familial

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

text: Wo


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: FRD

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Mendelian

text: Hypophosphatemia, Familial

text: Yes

text: Wuerzburg

characteristic: submitted subject id

characteristic: submitter handle


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: Bone marrow

characteristic: body site

text: GRU

text: Bone marrow

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study design

text: Precursor Cell Lymphoblastic Leukemia-Lymphoma

characteristic: study disease

text: The Genetic Basis of Hypodiploid ALL

text: Yes

text: Non-tumor DNA sample from Bone marrow of a human male participant in the dbGaP study The Genetic Basis of Hypodiploid ALL


text: dbGaP

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: Bone marrow

text: GRU

text: Bone marrow

text: No

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

text: The Genetic Basis of Hypodiploid ALL

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

text: Non-tumor DNA sample from Bone marrow of a human female participant in the dbGaP study The Genetic Basis of Hypodiploid ALL

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: RNA

characteristic: biospecimen repository sample id

text: Cell line

text: GRU

text: Acute lymphoblastic leukemia

text: Yes

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Tumor vs. Matched-Normal

text: The Genetic Basis of Hypodiploid ALL

text: Yes

characteristic: submitted subject id

characteristic: submitter handle

text: Precursor Cell Lymphoblastic Leukemia-Lymphoma tumor RNA sample from Cell line of a human female participant in the dbGaP study The Genetic Basis of Hypodiploid ALL


text: DOE Joint Genome Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: Tulasnella calospora AL13/4D

characteristic: description

text: Tulasnella calospora MUT 4182

characteristic: sample number

characteristic: strain

text: Generic sample from Tulasnella calospora MUT 4182


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: SRA accession

text: Amanita crenulata MM 9.01.06

text: Amanita crenulata MM 9.01.06

text: MM 9.01.06

text: Generic sample from Amanita crenulata MM 9.01.06

characteristic: title


characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Generic

text: Panicum hallii filipes FIL2 X Panicum hallii hallii HAL2 F2s

text: Panicum capillare

text: Generic sample from Panicum capillare


text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: Sorghum bicolor PI 505722

text: Sorghum bicolor

text: PI 505722

text: Generic sample from Sorghum bicolor


Tuatara transcriptome

text: Victoria University of Wellington

text: live

text: Generic

text: Pooled mRNA from head, trunk and tail of an early-stage embryo

text: Sphenodon punctatus

characteristic: organism

text: De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus)


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Panicum hallii var. filipes x Panicum hallii var. hallii


text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum bicolor PI 508366

text: Sorghum bicolor

text: PI 508366

text: Generic sample from Sorghum bicolor


text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum bicolor Top76-6

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


text: DOE Joint Genome Institute

text: live

text: Generic

text: Chyrsophyceae sp. CCMP2298

text: Ochromonadaceae sp. CCMP2298

text: Generic sample from Ochromonadaceae sp. CCMP2298


Ammopiptanthus mongolicus root

text: Minzu University of China

text: live

text: Generic

text: A pool RNA sample containing equal amount RNA from 72h PEG-6000 treated and untreated Ammopiptanthus mongolicus root samples

text: Ammopiptanthus mongolicus

text: transcriptome analysis of Ammopiptanthus mongolicus root under drought stress


text: Beijing Institute of Genomics, Chinese Academy of Sciences

text: live

text: Generic

text: anti-5-hydroxymethylytosine #39769, Active Motif

characteristic: chip antibody

text: Oryza sativa

characteristic: passages

text: Panicle

text: panicle

characteristic: tissue type

text: 93-11 5hmC


characteristic: INSDC last update

text: live

text: Generic

text: Oryza sativa

text: Panicle

text: panicle

text: LYP9 5hmC


characteristic: INSDC secondary accession

text: live

text: Generic

text: Oryza sativa

text: Panicle

text: panicle

text: PA64s 5hmC


House sparrow sample 1

text: Uppsala University

text: live

characteristic: INSDC status

text: Generic

text: Adult male

text: Passer domesticus

text: House sparrow sample 1


House sparrow sample 2

text: Uppsala University

text: live

text: Generic

characteristic: NCBI submission package

text: one nestling (ca 9 days old)

text: Passer domesticus

text: House sparrow sample 2


text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Spartina petinata RR-2-47-4

characteristic: description

text: Sporobolus michauxianus

text: Generic sample from Spartina pectinata


Pool A

text: University of Liverpool

text: live

text: Generic

text: Pool of 4 Syncerus caffer DNA samples from Hluhluwe iMfolozi Park, in the KwaZulu Natal province of South Africa

text: Syncerus caffer caffer

text: Pool of 4 Syncerus caffer DNA samples


Pool B

text: University of Liverpool

text: live

text: Generic

text: Pool of 5 Syncerus caffer DNA samples from Hluhluwe iMfolozi Park, in the KwaZulu Natal province of South Africa

text: Syncerus caffer caffer

text: Pool of 5 Syncerus caffer DNA samples


text: ZF-screens B.V.

text: live

text: Generic

text: Pubertal autumn-spawning seawater-raised female rainbow trout (Oncorhynchus mykiss) were rested (n=10) or swum (n=10) for 1176 km at 0.75 body-lengths/second under reproductive conditions for 40 days. RNA was isolated from red and white muscle individually and from each pool of 10 samples a Illumina RNA-seq library was made and sequenced

text: Oncorhynchus mykiss

text: rainbow trout red muscle from swimmers


text: ZF-screens B.V.

text: live

text: Generic

text: Oncorhynchus mykiss

text: rainbow trout red muscle from resters


text: ZF-screens B.V.

text: live

text: Generic

text: Oncorhynchus mykiss

text: rainbow trout white muscle from swimmers


text: ZF-screens B.V.

text: live

text: Generic

text: Oncorhynchus mykiss

text: rainbow trout white muscle from resters


text: Sharp, Biology, MIT

text: live

text: Generic

text: 1-7d adult

characteristic: developmental stage

characteristic: genotype/variation

text: Drosophila melanogaster

text: Zeus testis knockdown

text: Oregon R

characteristic: strain

text: dissected testis

characteristic: tissue

text: Zeus knockdown testis expression profiling 1


characteristic: External Id

text: Sharp, Biology, MIT

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: 1-7d adult

text: Drosophila melanogaster

text: Zeus testis knockdown

text: Oregon R

text: dissected testis

text: Zeus knockdown testis expression profiling 2

characteristic: title


text: Sharp, Biology, MIT

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: 1-7d adult

text: Drosophila melanogaster

characteristic: organism

text: Caf40 testis knockdown

text: Oregon R

text: dissected testis

text: Caf40 knockdown testis expression profiling 1


text: Sharp, Biology, MIT

characteristic: INSDC last update

text: live

text: Generic

text: 1-7d adult

text: Drosophila melanogaster

text: Caf40 testis knockdown

text: Oregon R

text: dissected testis

text: Caf40 knockdown testis expression profiling 2


text: Sharp, Biology, MIT

characteristic: INSDC secondary accession

text: live

text: Generic

text: 1-7d adult

text: wildtype

text: Drosophila melanogaster

text: Dmel wildtype

text: Oregon R

text: dissected testis

text: Dmel wildtype testis expression profiling 1


text: Sharp, Biology, MIT

text: live

characteristic: INSDC status

text: Generic

text: 1-7d adult

text: wildtype

text: Drosophila melanogaster

text: Dmel wildtype

text: Oregon R

text: dissected testis

text: Dmel wildtype testis expression profiling 2


text: Sharp, Biology, MIT

text: live

text: Generic

characteristic: NCBI submission package

text: 1-7d adult

text: wildtype

text: Drosophila simulans

text: Dsim wildtype

text: dissected testis

text: Dsim wildtype testis expression profiling


text: Sharp, Biology, MIT

text: live

text: Generic

text: 1-7d adult

text: wildtype

text: Drosophila yakuba

text: Dyak wildtype

text: dissected testis

text: Dyak wildtype testis expression profiling


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Escherichia coli P0305260.1

text: Escherichia coli P0305260.1


text: Cardiovascular Genomics, Genetics, Texas Biomedical Research Institute

text: live

text: Generic

text: Papio hamadryas

text: liver

text: HighLDL_HCHF_1x 3817


text: live

text: Generic

text: Papio hamadryas

text: liver

text: HighLDL_HCHF_1x 4154


text: live

text: Generic

text: Papio hamadryas

text: liver


text: live

text: Generic

text: Papio hamadryas

text: liver

text: HighDL_Chow_1x 3817


text: live

text: Generic

text: Papio hamadryas

text: liver

text: HighDL_Chow_1x 4154


text: J. Craig Venter Institute

text: live

text: Generic

text: RNA-Seq of Phaeodactylum tricornutum CCMP632: B12 limited

text: Phaeodactylum tricornutum CCAP 1055/1

text: Generic sample from Phaeodactylum tricornutum CCAP 1055/1


text: DOE Joint Genome Institute

text: live

text: Generic

text: Saccharum spontaneum SES234B

text: Saccharum spontaneum

characteristic: sample number

text: Generic sample from Saccharum spontaneum


name: 1132627032534 Phatr 1a - B12 Fe colimited solid138000341 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: RNA-Seq of Phaeodactylum tricornutum CCMP632: B12 Fe colimited

characteristic: description

text: Phaeodactylum tricornutum CCAP 1055/1


name: 1132627032536 Phatr 1b - B12 Fe colimited solid138000341 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Phaeodactylum tricornutum CCAP 1055/1


name: 1132627032542 Phatr 3a - Fe limited solid138000341 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: RNA-Seq of Phaeodactylum tricornutum CCMP632: Fe limited

text: Phaeodactylum tricornutum CCAP 1055/1


name: 1132627032544 Phatr 3b - Fe limited solid138000341 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Phaeodactylum tricornutum CCAP 1055/1


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

characteristic: cell line

characteristic: chip antibody

text: Mus musculus

text: E14 mouse embryonic stem cells

text: ChIPseq mES NcoA3


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: IgG

text: Mus musculus

text: E14 mouse embryonic stem cells

text: ChIPseq mES Input


text: DOE Joint Genome Institute

text: live

text: Generic

text: Miscanthus floridulus US56-0022-03

text: Miscanthus floridulus

characteristic: strain

text: Generic sample from Miscanthus floridulus


text: University of Maryland

text: live

text: Generic

text: Nitella mirabilis

text: Charophycean Transcriptomeics to be used for Algal Phylogenetics


text: Lifetechnologies

text: live

text: Generic

text: Salmonella enterica subsp. enterica serovar Montevideo str. R8_4673

text: Salmonella Montevideo R8-4673


text: Lifetechnologies

text: live

text: Generic

text: Salmonella enterica subsp. enterica serovar Montevideo str. R8_4919

text: Salmonella Montevideo R8_4919


name: 1132627032546 Phatr 4a - replete solid138000341 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: RNA-Seq of Phaeodactylum tricornutum CCMP632: replete

text: Phaeodactylum tricornutum CCAP 1055/1


name: 1132627032548 Phatr 4b - replete solid138000341 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Phaeodactylum tricornutum CCAP 1055/1


text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum halepense Gypsum9

text: Sorghum halepense

text: Generic sample from Sorghum halepense


text: Rosbash, Biology, Brandeis University

text: live

text: Generic

text: 3-4 days

characteristic: age

text: Drosophila melanogaster

text: head, ZT2, mRNA

text: yellow white (yw)

characteristic: time point

text: head

characteristic: tissue


characteristic: External Id

text: Rosbash, Biology, Brandeis University

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: 3-4 days

text: Drosophila melanogaster

text: head, ZT14, mRNA

text: yellow white (yw)

text: head


text: Rosbash, Biology, Brandeis University

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: 3-4 days

text: Drosophila melanogaster

text: head, ZT0, mRNA

text: Canton s (Cs)

text: head

characteristic: title


text: Rosbash, Biology, Brandeis University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: 3-4 days

text: Drosophila melanogaster

characteristic: organism

text: head, ZT4, mRNA

text: Canton s (Cs)

text: head


text: Rosbash, Biology, Brandeis University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: 3-4 days

text: Drosophila melanogaster

text: head, ZT8, mRNA

text: Canton s (Cs)

text: head


text: Rosbash, Biology, Brandeis University

text: live

text: Generic

text: 3-4 days

text: Drosophila melanogaster

text: head, ZT12, mRNA

text: Canton s (Cs)

text: head


text: Rosbash, Biology, Brandeis University

text: live

text: Generic

text: 3-4 days

text: Drosophila melanogaster

text: head, ZT16, mRNA

text: Canton s (Cs)

text: head


text: Rosbash, Biology, Brandeis University

text: live

text: Generic

text: 3-4 days

text: Drosophila melanogaster

text: head, ZT20, mRNA

text: Canton s (Cs)

text: head


text: DOE Joint Genome Institute

text: live

text: Generic

text: Zea mays

characteristic: description

text: Zea mays

characteristic: sample number

text: Generic sample from Zea mays


text: Gene Expression Omnibus

text: live

text: Generic

text: Shin Lin, Stanford University

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Autopsy

characteristic: collection method

text: Sigmoid Colon tissue

characteristic: donor age

text: Caucasian and African American

characteristic: donor ethnicity

text: healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)

characteristic: donor health status

characteristic: donor id

text: male

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Sigmoid Colon

characteristic: tissue type

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Replicate 1

characteristic: batch

text: Thomson Laboratory

text: Cell Line

text: H1 BMP4 Derived Trophoblast Cultured Cell Line, biological replicate 1 (r1)

text: H1 cells were cultured on plates coated with fibronectin and human collagen

characteristic: differentiation method

text: embryonic stem cell differentiated by treatment with fibronectin and human collagen

characteristic: differentiation stage

characteristic: line

text: 50% StemLine II serum-free HSC expansion medium (HSFEM; Sigma), 50% ESFM, GlutaMAX (1/100 dilution), Ex-Cyte supplement (1/2000 dilution), 100 mM MTG, and 10 ng/ml FGF2.

characteristic: medium

text: genomic DNA

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: Replicate 2

text: Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: H1 BMP4 Derived Trophoblast Cultured Cell Line, biological replicate 2 (r2)

characteristic: description

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: Replicate 1

text: Thomson Laboratory

text: Cell Line

text: H1-Mesenchymal Stem Cell Line, biological replicate 1 (r1)

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: Replicate 2

characteristic: batch

text: Thomson Laboratory

text: Cell Line

text: H1-Mesenchymal Stem Cell Line, biological replicate 2 (r2)

characteristic: differentiation method

characteristic: differentiation stage

characteristic: line

characteristic: medium

text: genomic DNA

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: Replicate 1

text: Thomson Laboratory

text: Cell Line

text: H1 BMP4 Derived Mesendoderm Cultured Cell Line, biological replicate 1 (r1)

text: genomic DNA

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: Replicate 2

text: Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: H1 BMP4 Derived Mesendoderm Cultured Cell Line, biological replicate 2 (r2)

characteristic: description

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Replicate 1

characteristic: batch

text: Thomson Laboratory

text: Cell Line

text: H1 Derived Neuronal Progenitor Cultured Cell Line, biological replicate 1 (r1)

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Replicate 2

text: Thomson Laboratory

text: Cell Line

text: H1 Derived Neuronal Progenitor Cultured Cell Line, biological replicate 2 (r2)

characteristic: differentiation method

characteristic: differentiation stage

characteristic: line

characteristic: medium

text: genomic DNA

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: Replicate 1

text: Thomson Laboratory

text: Cell Line

text: H1 Cell Line, biological replicate 1 (r1)

text: genomic DNA

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Replicate 2

text: Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: H1 Cell Line, biological replicate 2 (r2)

characteristic: description

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

text: Generic sample from Homo sapiens


text: Dou, Department of Pathology, Department of Biological Chemistry, University of Michigan

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Mof

characteristic: antibody

text: Santa Cruz

characteristic: antibody vendor

text: wild type ES cells

characteristic: cell type

text: Mus musculus

text: Embryonic stem cells

characteristic: strain

text: Mof_ChIPSeq 1


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: Mof

text: Santa Cruz

text: wild type ES cells

text: Mus musculus

characteristic: passage

text: Embryonic stem cells

text: Mof_ChIPSeq 2


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: wild type ES cells

text: Mus musculus

text: Embryonic stem cells

text: input DNA

characteristic: title


text: NIH Intramural Sequencing Center

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Acinetobacter baumannii ABNIH1 genomic sample

characteristic: description

text: Acinetobacter baumannii ABNIH1

text: Generic sample from Acinetobacter baumannii ABNIH1


text: Hubrecht Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: bait

text: AC E14

text: Mus musculus

characteristic: organism

text: astrocytes E14, AB_parts


text: Hubrecht Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, AB_parts


text: Hubrecht Institute

text: live

text: Generic

text: ESC E14

characteristic: cell type

text: Mus musculus

text: ESC E14, AB_parts


text: Hubrecht Institute

text: live

text: Generic

text: iPSC

text: Mus musculus

text: iPSC, AB_parts


text: Hubrecht Institute

text: live

text: Generic

text: NPC 129/Cast

text: Mus musculus

text: NPC 129/Cast, AB_parts


text: Hubrecht Institute

text: live

text: Generic

text: Beta-globin

text: ESC 129/Ola

text: Mus musculus

text: ESC 129/Ola, Beta-globin


text: Hubrecht Institute

text: live

text: Generic

text: AC E14

text: Mus musculus

text: astrocytes E14, GeneDesert 44.5Mb


text: Hubrecht Institute

text: live

text: Generic

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, GeneDesert 44.5Mb


text: Hubrecht Institute

text: live

text: Generic

text: ESC E14

text: Mus musculus

text: ESC E14, GeneDesert 44.5Mb


text: Hubrecht Institute

text: live

text: Generic

text: iPSC

text: Mus musculus

text: iPSC, GeneDesert 44.5Mb


text: Hubrecht Institute

text: live

text: Generic

text: NPC 129/Cast

text: Mus musculus

text: NPC 129/Cast, GeneDesert 44.5Mb


text: Hubrecht Institute

text: live

text: Generic

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, MeCP2


text: Hubrecht Institute

text: live

text: Generic

text: Nanog

text: AC E14

text: Mus musculus

text: astrocytes E14, Nanog


text: Hubrecht Institute

text: live

text: Generic

text: Nanog

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, Nanog


text: Hubrecht Institute

text: live

text: Generic

text: Nanog

text: ESC E14

text: Mus musculus

text: ESC E14, Nanog


text: Hubrecht Institute

text: live

text: Generic

text: Nanog

text: Mus musculus

text: Fetal brain, Nanog

text: fetal brain

characteristic: tissue


characteristic: External Id

text: Hubrecht Institute

text: live

text: Generic

text: Nanog

text: iPSC

text: Mus musculus

text: iPSC, Nanog


text: Hubrecht Institute

characteristic: INSDC center name

text: live

text: Generic

text: Nanog

text: NPC 129/Cast

text: Mus musculus

text: NPC 129/Cast, Nanog


text: Hubrecht Institute

text: live

text: Generic

characteristic: NCBI submission package

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, Pcdh11x


text: Hubrecht Institute

text: live

text: Generic

text: Pctk

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, Pctk


text: Hubrecht Institute

text: live

text: Generic

text: AC E14

text: Mus musculus

text: astrocytes E14, Ptprz1


text: Hubrecht Institute

text: live

text: Generic

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, Ptprz1


text: Hubrecht Institute

text: live

text: Generic

text: ESC E14

text: Mus musculus

text: ESC E14, Ptprz1


text: Hubrecht Institute

text: live

text: Generic

text: iPSC

text: Mus musculus

text: iPSC, Ptprz1


text: Hubrecht Institute

text: live

text: Generic

text: NPC 129/Cast

text: Mus musculus

text: NPC 129/Cast, Ptprz1


text: Hubrecht Institute

text: live

text: Generic

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, Rad23a


text: Hubrecht Institute

text: live

text: Generic

text: Retsat

text: AC E14

text: Mus musculus

text: astrocytes E14, Retsat


text: Hubrecht Institute

text: live

text: Generic

text: Retsat

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, Retsat


text: Hubrecht Institute

text: live

text: Generic

text: Retsat

text: ESC E14

text: Mus musculus

text: ESC E14, Retsat


text: Hubrecht Institute

text: live

text: Generic

text: Retsat

text: iPSC

text: Mus musculus

text: iPSC, Retsat


text: Hubrecht Institute

text: live

text: Generic

text: Retsat

text: NPC 129/Cast

text: Mus musculus

text: NPC 129/Cast, Retsat


text: Hubrecht Institute

text: live

text: Generic

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, Slitrk4


text: Hubrecht Institute

text: live

text: Generic

text: AC E14

text: Mus musculus

text: astrocytes E14, Tas2R110


text: Hubrecht Institute

text: live

text: Generic

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, Tas2R110


text: Hubrecht Institute

text: live

text: Generic

text: ESC E14

text: Mus musculus

text: ESC E14, Tas2R110


text: Hubrecht Institute

text: live

text: Generic

text: Mus musculus

text: Fetal brain, Tas2R110

text: fetal brain


text: Hubrecht Institute

text: live

text: Generic

text: iPSC

text: Mus musculus

text: iPSC, Tas2R110


text: Hubrecht Institute

text: live

text: Generic

text: NPC 129/Cast

text: Mus musculus

text: NPC 129/Cast, Tas2R110


text: Hubrecht Institute

text: live

text: Generic

text: Xist

text: ESC 129/Cast

text: Mus musculus

text: ESC 129/Cast, Xist