H3K36me3 and H3K79me3 nucleosome

text: Pennsylvania State University

text: live

text: Generic

text: Saccharomyces cerevisiae


H3 nucleosome

status: PUBLIC

characteristic: External Id

text: Pennsylvania State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Saccharomyces cerevisiae

characteristic: organism

text: Nucleosome and histone modification during yeast meiosis

characteristic: title


text: DOE-GEBA 2007

tag: attribute

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Prodigal 1.4, GenePRIMP

characteristic: Gene Calling Method

text: Gram+

characteristic: Gram Staining

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: isolated by M. Friedrich and B. Schink

characteristic: Isolation Comments

text: Generic

text: Sporulating

characteristic: Sporulation

text: Yes

characteristic: Type Strain

text: symbiont

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

characteristic: collection date

text: Germany

characteristic: country

text: Keywords: GSC:MIGS:2.1

characteristic: description

text: Fresh water, Sludge, Marine

characteristic: environment

characteristic: investigation type

text: isolated from syntrophic coculture FlGlyM (DSM 6945), which was isolated from anoxic sewage sludge

characteristic: isolation site

text: syntrophic coculture FlGlyM (DSM 6945) isolated from anoxic sewage sludge

characteristic: isolation-source

text: Nonmotile

characteristic: motility

text: Syntrophobotulus glycolicus DSM 8271

text: Syntrophobotulus glycolicus FlGlyR, DSM 8271

characteristic: project name

text: DSM 8271

text: anaerobe

text: DSM 8271

characteristic: strain

text: Syntrophic

characteristic: symbiotic relationship

characteristic: temperature optimum

text: Mesophile

characteristic: temperature range

text: Syntrophobotulus glycolicus DSM 8271, complete genome.

text: type strain of Syntrophobotulus glycolicus

characteristic: type material


name: H3 and H3K4me3 nucleosome tech replicates

characteristic: External Id

text: Pennsylvania State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Saccharomyces cerevisiae

characteristic: organism

characteristic: title


name: H3K9ac and H3K4me3 nuclesome tech replicates

text: Pennsylvania State University

text: live

text: Generic

text: Saccharomyces cerevisiae


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.3-042010

characteristic: assembly

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Streptococcus infantis strain ATCC 700779

characteristic: description

text: terrestrial biome [ENVO:00000446]

characteristic: environment (biome)

text: human-associated habitat [ENVO:00009003]

characteristic: environment (feature)

text: biological product [ENVO:02000043]

characteristic: environment (material)

characteristic: estimated size

text: Level 2: High-Quality Draft47.9x;31

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

characteristic: investigation type

text: not determined

text: airways

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: not determined

characteristic: misc_param: HMP body site

text: airways

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Streptococcus infantis ATCC 700779

text: Streptococcus infantis ATCC 700779

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: ATCC 700779, JCM 10157

text: Homo sapiens

characteristic: specific host

text: ATCC 700779

text: MIGS Cultured Bacterial/Archaeal sample from Streptococcus infantis ATCC 700779


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.3-04192010

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Campylobacter upsaliensis strain JV21

characteristic: description

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft46.6x;49

text: not determined

text: not determined

text: gastrointestinal tract

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: not determined

text: not determined

text: Campylobacter upsaliensis JV21

characteristic: organism

text: Campylobacter upsaliensis JV21

text: Reference Genome

text: not determined

text: BEI HM-297

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Campylobacter upsaliensis JV21

characteristic: title


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v. 2.3-042010

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: culture-collection

text: Streptococcus cristatus strain ATCC 51100

characteristic: estimated size

text: Level 2: High-Quality Draft42.6x;31

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: oral cavity

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Streptococcus cristatus ATCC 51100

text: Streptococcus cristatus ATCC 51100

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: ATCC 51100

text: Homo sapiens

characteristic: specific host

text: ATCC 51100

text: MIGS Cultured Bacterial/Archaeal sample from Streptococcus cristatus ATCC 51100


name: H3K36me3 and H3K79me3 nucleosome tech replicates

text: Pennsylvania State University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Saccharomyces cerevisiae

characteristic: organism

characteristic: title


H3 nucleosome replicates

characteristic: External Id

text: Pennsylvania State University

characteristic: INSDC center name

text: live

text: Generic

text: Eucommia ulmoides


text: Baylor College of Medicine

text: live

text: Generic

text: Mayetiola destructor Syrian strain

characteristic: description

text: Mayetiola destructor

text: Syrian

characteristic: strain

text: Mayetiola destructor Syrian strain


H3,H3K4me3,H3K79me3,H3K36me3 samples

text: Pennsylvania State University

text: live

text: Generic

text: Saccharomyces cerevisiae


text: Baylor College of Medicine

text: live

text: Generic

text: Mayetiola hordei Barley strain

text: Mayetiola hordei

text: Barley

text: Generic sample from Mayetiola hordei


Lygus salivary gland

text: USDA-ARS

text: live

text: Generic

text: Salivary glands dissected from male and female Lygus lineolaris

text: Lygus lineolaris

text: Sialotranscriptome of lygus


sng

text: Harvard University

text: live

text: Generic

text: marine metagenome

text: electrogenic biofilm metagenome


Lygus lineolaris_control

text: USDA-ARS

text: live

text: Generic

text: Control samples of Lygus lineolaris for the time course experiment on immune response.

text: Lygus lineolaris

text: Control sample for Lygus lineolaris immune response


Lygus lineolaris 12 hour PI

text: USDA-ARS

text: live

text: Generic

text: 12 hour post-infection samples of Lygus lineolaris for the time course experiment on immune response.

text: Lygus lineolaris

text: Lygus lineolaris 12 hour post-infection


Lygus lineolaris 24 Hour PI

text: USDA-ARS

text: live

text: Generic

text: 24 hour post-infection samples of Lygus lineolaris for the time course experiment on immune response.

text: Lygus lineolaris

text: Lygus lineolaris 24 hour post-infection


Lygus lineolaris 36 Hour PI

text: USDA-ARS

text: live

text: Generic

text: 36 hour post-infection samples of Lygus lineolaris for the time course experiment on immune response.

text: Lygus lineolaris

text: Lygus lineolaris 36 Hour post-infection samples


Lygus lineolaris 48 Hour PI

text: USDA-ARS

text: live

text: Generic

text: 48 hour post-infection samples of Lygus lineolaris for the time course experiment on immune response.

text: Lygus lineolaris

text: Lygus lineolaris 48 hour post-infection samples


Lygus lineolaris 60 Hour PI

text: USDA-ARS

text: live

text: Generic

text: 60 hour post-infection samples of Lygus lineolaris for the time course experiment on immune response.

text: Lygus lineolaris

text: Lygus lineolaris 60 hour post-infection samples


Lygus lineolaris 72 Hour PI

text: USDA-ARS

text: live

text: Generic

text: 72 hour post-infection samples of Lygus lineolaris for the time course experiment on immune response.

text: Lygus lineolaris

text: Lygus lineolaris 72 hour post-infection samples


name: 1129012709001 Toxoplasma gondii FOU strain TOXOFOU-P3KB-01-610 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Toxoplasma gondii FOU strain

text: Toxoplasma gondii FOU

text: Generic sample from Toxoplasma gondii FOU


name: 1128997704011 Toxoplasma gondii FOU strain TOXOPLASMAFOU-P8KB-01-618 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Toxoplasma gondii FOU


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Normalized Mixed Tissue


text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Callus


text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Secondary Root


text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Stem


text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Ripe Fruit


text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Green Fruit


text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Leaf


text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Flower Buds


text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Flower


text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Mature Seed


text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Primary Tap Root


text: live

text: Generic

text: Atropa belladonna

text: Atropa belladonna Sterile Seedling


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.3-04192010

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Mobiluncus curtisii str. ATCC 51333

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft48.7x;16

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: urogenital tract, vaginal

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Mobiluncus curtisii ATCC 51333

text: Mobiluncus curtisii ATCC 51333

characteristic: project name

text: Reference Genome

text: not determined

text: ATCC 51333

text: Homo sapiens

text: ATCC 51333

text: MIGS Cultured Bacterial/Archaeal sample from Mobiluncus curtisii ATCC 51333


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.3-042010

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Streptococcus equinus ATCC 9812

characteristic: description

text: Level 1: Standard Draft59.68x;57

text: not determined

text: not determined

text: gastrointestinal tract, gut

text: not determined

text: biological product [ENVO:02000043]

text: Gut

text: not determined

text: not determined

text: Streptococcus equinus ATCC 9812

characteristic: organism

text: Streptococcus equinus ATCC 9812

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: ATCC 9812, DSM 20558

text: Homo sapiens

characteristic: specific host

text: ATCC 9812

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Streptococcus equinus ATCC 9812

characteristic: title


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.3-042010

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Streptococcus agalactiae strain ATCC 13813

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft52.97x;134

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: oral cavity

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Streptococcus agalactiae ATCC 13813

text: Streptococcus agalactiae ATCC 13813

characteristic: project name

text: Reference Genome

text: not determined

text: ATCC 13813, DSM 2134

text: Homo sapiens

text: ATCC 13813

text: MIGS Cultured Bacterial/Archaeal sample from Streptococcus agalactiae ATCC 13813


GPOIa

characteristic: External Id

text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Jepson Prairie enrichment #9 High biomass

characteristic: description

text: compost metagenome

characteristic: organism

text: CTCTGacgggcggtgtgtRc

characteristic: primer

text: Sample from compost metagenome

characteristic: title


GPOIb

text: live

text: Generic

text: Jepson Prairie enrichment #9 low biomas

text: compost metagenome

text: ACTCTacgggcggtgtgtRc

text: Sample from compost metagenome


GPOIc

text: live

text: Generic

text: Jepson Prairie enrichment #9 low biomas/CMC

text: compost metagenome

text: ACTACacgggcggtgtgtRc

text: Sample from compost metagenome


GPOId

text: live

text: Generic

text: Zamora enrichment #9 High biomas

text: compost metagenome

text: ACGTCacgggcggtgtgtRc

text: Sample from compost metagenome


GPOIe

text: live

text: Generic

text: Zamora enrichment #9 low biomass

text: compost metagenome

text: ACGATacgggcggtgtgtRc

text: Sample from compost metagenome


GPOIf

text: live

text: Generic

text: Zamora enrichment #9 low biomass/CMC/

text: compost metagenome

text: ACATGacgggcggtgtgtRc

text: Sample from compost metagenome


text: live

text: Generic

text: Catharanthus roseus

text: Catharanthus roseus Normalized Mixed Tissue


text: live

text: Generic

text: Catharanthus roseus

text: Catharanthus roseus Flowers


text: live

text: Generic

text: YE 0.3 mg/mL for 12h

text: Catharanthus roseus

text: Catharanthus roseus Suspension Culture


text: live

text: Generic

text: YE 0.3 mg/mL for 24h

text: Catharanthus roseus

text: Catharanthus roseus Suspension Culture


text: live

text: Generic

text: YE 0.0 mg/mL for 24h

text: Catharanthus roseus

text: Catharanthus roseus Suspension Culture


text: live

text: Generic

text: Catharanthus roseus

text: Catharanthus roseus Sterile Seedlings


text: live

text: Generic

text: MJ 6uM 12d

text: Catharanthus roseus

text: Catharanthus roseus Sterile Seedlings


text: live

text: Generic

text: YE 0.3 mg/mL for 6h

text: Catharanthus roseus

text: Catharanthus roseus Suspension Culture


text: live

text: Generic

text: MJ 100uM 6h

text: Catharanthus roseus

text: Catharanthus roseus Suspension Culture


text: live

text: Generic

text: MJ 100uM 12h

text: Catharanthus roseus

text: Catharanthus roseus Suspension Culture


text: live

text: Generic

text: MJ 100uM 24h

text: Catharanthus roseus

text: Catharanthus roseus Suspension Culture


text: live

text: Generic

text: MJ 100uM 0h

text: Catharanthus roseus

text: Catharanthus roseus Suspension Culture


text: live

text: Generic

text: Catharanthus roseus

text: Catharanthus roseus Mature Leaf


text: live

text: Generic

text: Catharanthus roseus

text: Catharanthus roseus Immature Leaf


text: live

text: Generic

text: Catharanthus roseus

text: Catharanthus roseus Stem


text: live

text: Generic

text: Catharanthus roseus

text: Catharanthus roseus Root


text: live

text: Generic

text: Catharanthus roseus

text: Catharanthus roseus Hairy Root (TDCi)


text: live

text: Generic

text: Catharanthus roseus

text: Catharanthus roseus Hairy Root (RebH_F)


sample 1 - VAo5

text: Imperial College

text: live

text: Generic

text: An isolate collected from A. obstetricans in Spain, Valencia (2008) by Dr Matthew Fisher

text: Batrachochytrium

text: BdGPL - VAo5


text: live

text: Generic

text: Catharanthus roseus

text: Catharanthus roseus Wild Type Hairy Root


text: live

text: Generic

text: MJ 250uM for 0h

text: Catharanthus roseus

text: Catharanthus roseus Wild Type Hairy Roots


text: live

text: Generic

text: MJ 250uM for 24h

text: Catharanthus roseus


sample 2 - JEL270

text: Imperial College

text: live

text: Generic

text: An isolate collected from R. catesbeiana in America, PtReyes (1999) by Dr Joyce Longcore

text: Batrachochytrium

text: BdGPL - JEL270


text: live

text: Generic

text: MJ 250uM for 0h

text: Catharanthus roseus

text: Catharanthus roseus Hairy Roots (TDCi)


sample 3 - Lcaerulae98

text: Imperial College

text: live

text: Generic

text: An isolate collected from L. caerulea in Australia, Rockhampton (1999) by Dr Lee Berger

text: Batrachochytrium

text: BdGPL - Lcaerulae98


sample 4 - C2A

text: Imperial College

text: live

text: Generic

text: An isolate collected from A. obstetricans in Spain, Penalara (2002) by Dr Matthew Fisher

text: Batrachochytrium

text: BdGPL - C2A


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: MJ 250uM for 24h

text: Catharanthus roseus

text: Catharanthus roseus Hairy Roots (TDCi)


sample 5 - VRp1

text: Imperial College

text: live

text: Generic

text: An isolate collected from R. perezi in Spain, Valencia (2008) by Dr Matthew Fisher

text: Batrachochytrium

text: BdGPL - VRp1


sample 6 - CCB1

text: Imperial College

text: live

text: Generic

text: An isolate collected from A. muletensis in Mallorca, Coc* de sa Bova (2007) by Dr Matthew Fisher

text: Batrachochytrium

text: BdCAPE - CCB1


sample 7 - L2203

text: Imperial College

text: live

text: Generic

text: An isolate collected from L. fallax in Montserrat (2009) by Dr Trenton Garner

text: Batrachochytrium

text: BdGPL - L2203


sample 8 - TF5a1

text: Imperial College

text: live

text: Generic

text: An isolate collected from A. muletensis in Mallorca, Torrent des Ferrerets (2007) by Dr Matthew Fisher

text: Batrachochytrium

text: BdCAPE - TF5a1


sample 9 - JEL274

text: Imperial College

text: live

text: Generic

text: An isolate collected from B. boreas in America, Colorado (1999) by Dr Joyce Longcore

text: Batrachochytrium

text: BdGPL - JEL274


sample 10 - 0739

text: Imperial College

text: live

text: Generic

text: An isolate collected from A. obstetricans in Switzerland (2007) by Dr Trenton Garner

text: Batrachochytrium

text: BdCH - 0739


sample 11 - IA042

text: Imperial College

text: live

text: Generic

text: An isolate collected from A. obstetricans in Spain, Ibon Acherito (2004) by Dr Trenton Garner

text: Batrachochytrium

text: BdGPL - IA042


sample 12 - JEL423

text: Imperial College

text: live

text: Generic

text: An isolate collected from P. lemur in Panama, Guabal (2004) by Dr Joyce Longcore

text: Batrachochytrium

text: BdGPL - JEL423


sample 14 - MCT8

text: Imperial College

text: live

text: Generic

text: An isolate collected from A. fuscigula in South Africa (2009) by Dr Che Weldon

text: Batrachochytrium

text: BdGPL - MCT8


sample 16 - UKTvB

text: Imperial College

text: live

text: Generic

text: An isolate collected from L. vulgaris in England, Kent (2007) by Dr Matthew Fisher

text: Batrachochytrium

text: BdGPL - UKTvB


sample 17 - MC55

text: Imperial College

text: live

text: Generic

text: An isolate collected from H. natalensis in South Africa (2009) by Dr Che Weldon

text: Batrachochytrium

text: BdCAPE - MC55


sample 18 - 0711

text: Imperial College

text: live

text: Generic

text: An isolate collected from A. obstetricans in France, Ansabere (2007) by Dr Matthew Fisher

text: Batrachochytrium

text: BdGPL - 0711


RNAseq

text: Centre National de la Recherche Scientifique - Information Genomique et Structurale

text: live

text: Generic

text: Total RNA was extracted using the hot phenol extraction procedure. PolyA RNAs were purified on oligodT Dynabeads (Invitrogen) and ribosomal RNA were depleted using the RiboMinus kit (Invitrogen). RNA quality was checked on agarose gel and with the Bioanalyzer (Agilent) ensuring the quantification of RNA peaks recommended by the manufacturer.

text: Saccharomyces cerevisiae

text: RNA-seq library


ChiqSeq

text: live

text: Generic

text: Saccharomyces cerevisiae

text: ChIP-seq Library


text: University of Florida

text: live

text: Generic

text: A genomic DNA sample from a previously unsequenced isogenized scarlet ebony strain (derived from the Drosophila Species Stock Center stock #14021-0251.044) was collected from adult females. This line has been maintained, following greater than 20 generations of inbreeding, for many years in the lab of Sergey V. Nuzhdin and has been used as the genetic background line in a series of X and third chromosome substitution lines. Genomic DNA was extracted from 20 adult D. simulans st e iso females using the DNeasy Blood &amp; Tissue kit (Qiagen). Illumina sequencing libraries were prepared following standard protocols from 1-3 ug of genomic DNA sheared by sonication (Duty Cycle 80%, Output 2, sets of 20 pulses for 5 rounds).

text: Drosophila simulans

text: D. simulans st e iso DNA I


text: University of Florida

text: live

text: Generic

text: A genomic DNA sample from a previously unsequenced isogenized scarlet ebony strain (derived from the Drosophila Species Stock Center stock #14021-0251.044) was collected from adult females. This line has been maintained, following greater than 20 generations of inbreeding, for many years in the lab of Sergey V. Nuzhdin and has been used as the genetic background line in a series of X and third chromosome substitution lines. Genomic DNA was extracted from a second, independent, sample of 20 adult D. simulans st e iso females using the DNeasy Blood &amp; Tissue kit (Qiagen). Illumina sequencing libraries were prepared following standard protocols from 1-3 ug of genomic DNA sheared by sonication (Duty Cycle 80%, Output 2, sets of 20 pulses for 5 rounds).

text: Drosophila simulans

text: D. simulans st e iso DNA II


text: Xiaole Shirley Liu, Biostatistics and Computational Biology, Dana Farber Cancer Institute and Harvard School of Public Health

text: live

text: Generic

characteristic: cell line

text: Drosophila melanogaster

text: S2 cell line


text: live

text: Generic

characteristic: antibody name

text: Abcam

characteristic: manufacturer

text: Drosophila melanogaster

text: S2 cell line


text: live

text: Generic

text: anti-SuHw

text: Pamela K. Geyer's lab

text: Drosophila melanogaster

text: S2 cell line


samle 19 - VAo2

text: Imperial College

text: live

text: Generic

text: An isolate collected from A. obstetricans in Spain, Valencia (2008) by Dr Matthew Fisher

text: Batrachochytrium

text: BdGPL - VAo2


sample 20 - PNP08489

text: Imperial College

text: live

text: Generic

text: An isolate collected from A. obstetricans in France, Lac Arlet (2008) by Dr Matthew Fisher

text: Batrachochytrium

text: BdGPL - PNP08489


sample 21 - JEL261

text: Imperial College

text: live

text: Generic

text: An isolate collected from R. catesbeiana in Canada, Quebec (1999) by Dr Joyce Longcore

text: Batrachochytrium

text: BdGPL - JEL261


sample 22 - VAo4

text: Imperial College

text: live

text: Generic

text: Batrachochytrium

text: BdGPL - VAo4


text: Sidow Lab, Pathology, Stanford University

text: live

text: Generic

text: CD4+ T-cells

characteristic: cell type

text: Homo sapiens

text: primary CD4+ T-cells

text: CD4+ T-cell nucleosome cores_1


characteristic: External Id

text: live

text: Generic

text: CD4+ T-cells

text: Homo sapiens

text: primary CD4+ T-cells

text: CD4+ T-cell nucleosome cores_2


characteristic: INSDC center name

text: live

text: Generic

text: CD4+ T-cells

text: Homo sapiens

text: primary CD4+ T-cells

text: CD4+ T-cell nucleosome cores_3


characteristic: INSDC first public

text: live

text: Generic

text: CD4+ T-cells

text: Homo sapiens

text: primary CD4+ T-cells

text: CD4+ T-cell nucleosome cores_4


characteristic: INSDC last update

text: live

text: Generic

text: CD8+ T-cells

text: Homo sapiens

text: primary CD8+ T-cells

text: CD8+ T-cell nucleosome cores_1


characteristic: INSDC secondary accession

text: live

text: Generic

text: CD8+ T-cells

text: Homo sapiens

text: primary CD8+ T-cells

text: CD8+ T-cell nucleosome cores_2


text: live

characteristic: INSDC status

text: Generic

text: CD8+ T-cells

text: Homo sapiens

text: primary CD8+ T-cells

text: CD8+ T-cell nucleosome cores_3


text: live

text: Generic

characteristic: NCBI submission model

text: CD8+ T-cells

text: Homo sapiens

text: primary CD8+ T-cells

text: CD8+ T-cell nucleosome cores_4


text: live

text: Generic

characteristic: NCBI submission package

text: Granulocytes

text: Homo sapiens

text: primary granulocytes (mostly neutrophils)

text: Granulocyte nucleosome cores_1


text: live

text: Generic

characteristic: SRA accession

text: Granulocytes

text: Homo sapiens

text: Granulocyte nucleosome cores_2


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: Granulocyte nucleosome cores_3


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: Granulocyte nucleosome cores_4


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: Granulocyte nucleosome cores_5


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: Granulocyte nucleosome cores_6


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: Granulocyte nucleosome cores_7


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: Granulocyte nucleosome cores_8


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: Granulocyte nucleosome cores_9


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: Granulocyte nucleosome cores_10


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: granulocytes

text: In vitro reconstituted nucleosome cores_1


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: granulocytes

text: In vitro reconstituted nucleosome cores_2


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: granulocytes

text: In vitro reconstituted nucleosome cores_4


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: granulocytes

text: In vitro reconstituted nucleosome cores_5


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: granulocytes

text: In vitro reconstituted nucleosome cores_6


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: granulocytes

text: Micrococcal nuclease treated control genomic DNA_1


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: granulocytes

text: Micrococcal nuclease treated control genomic DNA_2


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: granulocytes

text: Micrococcal nuclease treated control genomic DNA_3


text: live

text: Generic

text: CD4+ T-cells

text: Homo sapiens

text: primary CD4+ T-cells

text: RNAseq from primary human CD4+ T-cells


text: live

text: Generic

text: CD8+ T-cells

text: Homo sapiens

text: primary CD8+ T-cells

text: RNAseq from primary human CD8+ T-cells_1-3


text: live

text: Generic

text: Granulocytes

text: Homo sapiens

text: primary granulocytes

text: RNAseq from primary human Granulocytes_1-3


text: Andong National University

text: live

text: Generic

text: Plutella xylostella

text: A viral histone H4, CpBVH4 supresses the host gene expression


text: National Lab of Protein Engineering & Plant Genetic Engineering, College of life sciences, Peking University

text: live

text: Generic

text: 10 days post anthesis

characteristic: developmental stage

text: Gossypium hirsutum

text: fiber, February

text: fiber

characteristic: tissue

text: eycl


text: live

text: Generic

text: 10 days post anthesis

text: Gossypium hirsutum

characteristic: organism

text: fiber, August

text: fiber

text: bycl


text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis 10403-9

characteristic: strain

characteristic: title


text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis 11105-1


text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis 11208-E5


text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis 11208-E7


text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis 11208-J3


text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis 11208-J6


text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis 11208-J7


text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis 11209-E4


text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis 7904-5


str. Erdman-JF

text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis str. Erdman-JF

text: Erdman-JF

text: str. Erdman-JF


GZUCa

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Compost inoculum from Jepson Prairie

characteristic: description

text: compost metagenome

text: TCGTGacgggcggtgtgtRc

characteristic: primer

text: Sample from compost metagenome


GZUCb

text: live

text: Generic

text: Jepson Prairie enrichment #5

text: compost metagenome

text: CGTACacgggcggtgtgtRc

text: Sample from compost metagenome


GZUCc

text: live

text: Generic

text: Zamora enrichment #5

text: compost metagenome

text: TACGTacgggcggtgtgtRc

text: Sample from compost metagenome


GZUCd

text: live

text: Generic

text: Jepson Prairie enrichment #6

text: compost metagenome

text: TCATCacgggcggtgtgtRc

text: Sample from compost metagenome


GZUCe

text: live

text: Generic

text: Zamora enrichment #6

text: compost metagenome

text: TCTATacgggcggtgtgtRc

text: Sample from compost metagenome


GZUCf

text: live

text: Generic

text: Jepson Prairie enrichment #7

text: compost metagenome

text: TGTAGacgggcggtgtgtRc

text: Sample from compost metagenome


GZUCg

text: live

text: Generic

text: Zamora enrichment #7

text: compost metagenome

text: ACGTCacgggcggtgtgtRc

text: Sample from compost metagenome


GZUCh

text: live

text: Generic

text: Jepson Prairie enrichment #8

text: compost metagenome

text: AGTGTacgggcggtgtgtRc

text: Sample from compost metagenome


GZUCi

text: live

text: Generic

text: Zamora enrichment #8

text: compost metagenome

text: AGCACacgggcggtgtgtRc

text: Sample from compost metagenome


GZUBa

text: live

text: Generic

text: Jepson Prairie enrichment #1

text: compost metagenome

text: ACGTCacgggcggtgtgtRc

text: Sample from compost metagenome


GZUBb

text: live

text: Generic

text: Zamora enrichment #1

text: compost metagenome

text: ACACGacgggcggtgtgtRc

text: Sample from compost metagenome


GZUBc

text: live

text: Generic

text: Jepson Prairie enrichment #2

text: compost metagenome

text: CATGCacgggcggtgtgtRc

text: Sample from compost metagenome


GZUBd

text: live

text: Generic

text: Zamora enrichment #2

text: compost metagenome

text: CACAGacgggcggtgtgtRc

text: Sample from compost metagenome


GZUBe

text: live

text: Generic

text: Jepson Prairie enrichment #3

text: compost metagenome

text: TCGTGacgggcggtgtgtRc

text: Sample from compost metagenome


GZUBf

text: live

text: Generic

text: Zamora enrichment #3

text: compost metagenome

text: TCGACacgggcggtgtgtRc

text: Sample from compost metagenome


GZUBg

text: live

text: Generic

text: Jepson Prairie enrichment #4

text: compost metagenome

text: TGACTacgggcggtgtgtRc

text: Sample from compost metagenome


GZUBh

text: live

text: Generic

text: Zamora enrichment #4

text: compost metagenome

text: TACTCacgggcggtgtgtRc

text: Sample from compost metagenome


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Whole plants, control for salt and mannitol treatment

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Detached leaves, control for biotic stress pooled at 24hr, 48hr, 72hr

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Detached leaves, pathogen challenge pooled at 24hr, 48hr, 72hr

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Detached leaves, elicitor (BABA) pooled at 24hr, 48hr, 72hr

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Detached leaves, elicitor (BTH) pooled at 24hr, 48hr, 72hr

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Whole plants

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Whole plants, control for IAA, GA3, BAP, and ABA treatment

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Sepals

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Whole plants, control for 35C treatment

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Leaves

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Non-wounded leaflets, 24hr post wounding

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Roots

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Shoots

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Callus (10 and 11 week old) generated from leaves and stems

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Stolons, some were found above ground and green

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Whole tubers harvested 5-5-09

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Whole tubers harvested 6-1-09

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Whole mature flowers

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Petioles

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Petals

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Stamens

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Carpels

text: Solanum phureja


text: live

text: Generic

text: Wounded bottom two leaflets, 24hr post wounding

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Mature whole fruit

text: Solanum phureja


text: live

text: Generic

text: Immature whole fruit

text: Solanum phureja

text: Sample from Solanum phureja


text: live

text: Generic

text: Inside of fruit

text: Solanum phureja


text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis 7904-3


text: Harvard School of Public Health

text: live

text: Generic

text: Mycobacterium tuberculosis 15304-4B


text: Program in Gene Function and Expression, Umass Medial School

text: live

text: Generic

characteristic: antibody

text: 24 hours post fertilization

text: wild type

characteristic: genotype

text: Danio rerio

text: whole embryo at 24 hours post fertilization, H3K4me1 ChIP

text: whole embryo

text: H3K4me1_ChIPSeq rep2


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: 24 hours post fertilization

text: wild type

text: Danio rerio

text: whole embryo at 24 hours post fertilization, H3K4me3 ChIP

text: whole embryo

text: H3K4me3_ChIPSeq rep2


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: 24 hours post fertilization

text: wild type

text: Danio rerio

text: whole embryo at 24 hours post fertilization, input

text: whole embryo

text: Input rep2


text: Harvard School of Public Health

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Mycobacterium tuberculosis 15304-2A


text: Harvard School of Public Health

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mycobacterium tuberculosis 8104-3B


BGI-NMRgDNA

text: Beijing Genome Institute

text: live

text: Generic

characteristic: SRA accession

text: Heterocephalus glaber

text: male

characteristic: sex

text: Heterocephalus glaber


text: Broad Institute

text: live

text: Ecl

characteristic: Isolate, name or label

text: Generic

characteristic: collection date

text: ATCC

characteristic: isolation source

text: Encephalitozoon cuniculi

characteristic: organism

characteristic: sample name

text: grown in RK13 cells

characteristic: specific host

text: genotype 2

text: Generic sample from Encephalitozoon cuniculi


text: Broad Institute

text: live

text: Generic

text: Encephalitozoon cuniculi

text: genotype 3

characteristic: strain

characteristic: title


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Ec 2

text: Generic

text: ATCC

text: Encephalitozoon cuniculi

text: grown in RK13 cells

text: genotype 1


text: Integrative Genomics and Bioinformatics Core, Salk Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: vehicle

characteristic: agent

text: LNCaP

characteristic: cell line

characteristic: chip antibody

text: Upstate

characteristic: chip antibody vendor

text: yes

characteristic: mnase digestion

text: Homo sapiens

text: siCTRL (1027280)

characteristic: sirna transfection

text: Prostate cancer cell line (LNCaP)

text: LNCaP-H3K4me2-vehicle-siCTRL-Mnase-ChIP-Seq


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DHT

text: LNCaP

text: Upstate

text: yes

text: Homo sapiens

text: siCTRL (1027280)

text: Prostate cancer cell line (LNCaP)


text: live

text: Generic

text: vehicle

text: LNCaP

text: Upstate

text: yes

text: Homo sapiens

characteristic: organism

text: siFoxA1 (M-010319)

text: Prostate cancer cell line (LNCaP)

text: LNCaP-H3K4me2-vehicle-siFoxA1-Mnase-ChIP-Seq


text: live

text: Generic

text: DHT

text: LNCaP

text: Upstate

text: yes

text: Homo sapiens

text: siFoxA1 (M-010319)

text: Prostate cancer cell line (LNCaP)

text: LNCaP-H3K4me2-dht-siFoxA1-Mnase-ChIP-Seq

characteristic: title


characteristic: External Id

text: live

text: Generic

text: DHT

text: LNCaP

text: Upstate

text: Homo sapiens

text: siCTRL (1027280)

text: Prostate cancer cell line (LNCaP)


characteristic: INSDC center name

text: live

text: Generic

text: DHT

text: LNCaP

text: Abcam

text: Homo sapiens

text: siCTRL (1027280)

text: Prostate cancer cell line (LNCaP)


characteristic: INSDC first public

text: live

text: Generic

text: DHT

text: LNCaP

text: Abcam

text: Homo sapiens

text: siFoxA1 (M-010319)

text: Prostate cancer cell line (LNCaP)


characteristic: INSDC last update

text: live

text: Generic

text: DHT

text: LNCaP

text: Upstate

text: Homo sapiens

text: siFoxA1 (M-010319)

text: Prostate cancer cell line (LNCaP)


text: live

text: Generic

text: DHT

characteristic: agent

text: LNCaP

text: Santa Cruz

text: Homo sapiens

text: siCTRL (1027280)

text: Prostate cancer cell line (LNCaP)


text: live

text: Generic

text: DHT

text: LNCaP

characteristic: cell line

text: Santa Cruz

text: Homo sapiens

text: siFoxA1 (M-010319)

text: Prostate cancer cell line (LNCaP)


text: live

text: Generic

text: DHT

text: LNCaP

characteristic: chip antibody

text: Bethyl

text: Homo sapiens

text: siCTRL (1027280)

text: Prostate cancer cell line (LNCaP)


text: live

text: Generic

text: DHT

text: LNCaP

text: Bethyl

characteristic: chip antibody vendor

text: Homo sapiens

text: siFoxA1 (M-010319)

text: Prostate cancer cell line (LNCaP)


text: live

text: Generic

text: DHT

text: LNCaP

text: Homo sapiens

text: Prostate cancer cell line (LNCaP)

text: LNCaP-input-dht-ChIP-Seq


text: live

text: Generic

text: vehicle

text: LNCaP

text: Homo sapiens

text: siCTRL (1027280)

text: Prostate cancer cell line (LNCaP)

text: LNCAP-GroSeq-vehicle-siCTRL


text: live

text: Generic

text: DHT

text: LNCaP

text: Homo sapiens

text: siCTRL (1027280)

text: Prostate cancer cell line (LNCaP)

text: LNCAP-GroSeq-dht-siCTRL


text: live

text: Generic

text: DHT

text: LNCaP

text: Homo sapiens

text: siFoxA1 (M-010319)

text: Prostate cancer cell line (LNCaP)


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: Abcam AB7028

characteristic: antibody catalog number

characteristic: antibody lot number

text: V6.5 embryonic stem cells

characteristic: cell type

text: Mus musculus

text: Embyonic stem cells

text: HDAC1 mES_ChipSeq


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Abcam AB7028

text: V6.5 embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: HDAC1 mES biological replicate


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Abcam AB7029

text: V6.5 embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: HDAC2 mES_ChipSeq


text: live

text: Generic

characteristic: SRA accession

text: Abcam AB7029

text: V6.5 embryonic stem cells

text: Mus musculus

characteristic: organism

text: Embyonic stem cells

text: HDAC2 mES biological replicate


characteristic: External Id

text: live

text: Generic

text: Abcam AB17721

text: V6.5 embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: ChIP-Seq for Lsd1 in mES cells

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Abcam AB17721

text: V6.5 embryonic stem cells

text: Mus musculus

text: Embyonic stem cells


characteristic: INSDC last update

text: live

text: Generic

text: Abcam AB72418

text: V6.5 embryonic stem cells

text: Mus musculus

text: Embyonic stem cells

text: Mi-2 v6.5_ChipSeq


text: live

text: Generic

text: Abcam AB72418

text: V6.5 embryonic stem cells

text: Mus musculus

text: Embyonic stem cells


text: live

text: Generic

text: Upstate 07-574

text: V6.5 embryonic stem cells

text: REST

text: Mus musculus

text: Embyonic stem cells


text: live

text: Generic

text: Abcam AB8895

text: Embryonic stem cells

text: Mus musculus

text: ZHBTc4 ES cells


text: live

text: Generic

text: Abcam AB8895

text: Embryonic stem cells

text: dox

characteristic: drug

text: 48 hr

characteristic: duration of treatment

text: Mus musculus

text: ZHBTc4 ES cells


text: live

text: Generic

text: Abcam AB8895

text: Embryonic stem cells

characteristic: chip antibody

text: TCP

text: 48 hr

text: Mus musculus

text: ZHBTc4 ES cells


text: live

text: Generic

text: Embryonic stem cells

text: Mus musculus

text: ZHBTc4 ES cells


text: live

text: Generic

text: Embryonic stem cells

text: dox

text: 48 hr

text: Mus musculus

text: ZHBTc4 ES cells


text: live

text: Generic

text: Embryonic stem cells

text: TCP

text: 48 hr

text: Mus musculus

text: ZHBTc4 ES cells


text: WTCCB, The University of Edinburgh

text: live

text: Generic

text: Dendritic cells

text: anti-H3K27me3 (07-499; Millipore)

characteristic: mbd affinity column/chip antibody

text: Mus musculus

text: Male+female

characteristic: sex

text: Dendritic cells H3K27me3 ChIP-seq

characteristic: strain


text: WTCCB, The University of Edinburgh

characteristic: INSDC secondary accession

text: live

text: Generic

text: Th1 cells

characteristic: cell type

text: anti-H3K27me3 (07-499; Millipore)

text: Mus musculus

text: Male+female

text: Th1 cells H3K27me3 ChIP-seq


text: National Center for Genome Resources

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: description

text: Cajanus cajan

text: Sample from Cajanus cajan


text: University of Tokyo

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: University of Tokyo

characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: H3K4me3_ChIP-seq_siControl_without_TGF-beta

characteristic: title


text: University of Tokyo

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: H3K4me3_ChIP-seq_siControl_with_TGF-beta


text: University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: H3K4me3_ChIP-seq_siKDM5B_without_TGF-beta


text: BGI

text: live

text: Generic

text: Triticum urartu

text: Generic sample from Triticum urartu


text: Beijing Genome Institute

text: live

text: Generic

text: Aegilops tauschii

text: Generic sample from Aegilops tauschii


N'Diop Stool

text: URMITE CNRS UMR 6236

text: live

text: Generic

text: Stool sample was collected from a young male living in the N'Diop village of the Senegal

text: human gut metagenome

text: Stool sample from a young male living in the N'Diop rural village of Senegal


text: University of Georgia

text: live

text: Generic

text: Pennisetum squamulatum (Ps26; PI 319196, 2n=56)was used for ovule collection. Young florets were dissected from small inflorescence sections whose anthers were at stages between premeiosis and prophase, as determined by acetocarmine staining of anther squashes. One group of florets was stored in RNALater* solution (Ambion, Austin, TX, USA) at 4*C while the other group was processed for ovary clearing by methyl salicylate to screen for the ovary developmental stage. Ovules from thirty cleared florets were examined for each group. If the cleared sample showed aposporous initials in less than 30% of the ovaries and the remaining ovaries were at an earlier developmental stage, then florets stored in RNALater* solution from the same section of inflorescence were used for ovule dissection. About 40 ovules per sample were collected and total RNA was extracted from the ovules with RNAqueous*-Micro Micro Scale RNA Isolation Kit (Ambion).

text: Cenchrus squamulatus

text: Ps26 ovule transcriptome


text: University of Georgia

text: live

text: Generic

text: An apomictic backcross 8 line derived from Pennisetum glaucum(recurrent parent)crossed with Pennisetum squamulatum((Ps26; PI 319196, 2n=56)apomictic parent)). BC8_Line58 contains only one alien chromosome from PS26, the aposporous specific genomic region(ASGR)-carrier chromosome. Young florets were dissected from small inflorescence sections whose anthers were at stages between premeiosis and prophase, as determined by acetocarmine staining of anther squashes. One group of florets was stored in RNALater* solution (Ambion, Austin, TX, USA) at 4*C while the other group was processed for ovary clearing by methyl salicylate to screen for the ovary developmental stage. Ovules from thirty cleared florets were examined for each group. If the cleared sample showed aposporous initials in less than 30% of the ovaries and the remaining ovaries were at an earlier developmental stage, then florets stored in RNALater* solution from the same section of inflorescence were used for ovule dissection.

text: Cenchrus americanus x Cenchrus squamulatus

text: BC8 ovule transcriptome


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Escherichia coli DEC9E

text: Escherichia coli DEC9E


text: live

text: Generic

text: Escherichia coli DEC12B

text: Escherichia coli DEC12B


text: live

text: Generic

text: Escherichia coli DEC7C

text: Escherichia coli DEC7C


text: live

text: Generic

text: Escherichia coli DEC7D

text: Escherichia coli DEC7D


text: live

text: Generic

text: Escherichia coli DEC8B

text: Escherichia coli DEC8B


text: live

text: Generic

text: Escherichia coli DEC8C

text: Escherichia coli DEC8C


text: live

text: Generic

text: Escherichia coli DEC15E

text: Escherichia coli DEC15E


text: PGFE, UMass Medical School

text: live

text: Generic

text: agarose gel

characteristic: media

text: synthetic construct

text: B1H selection


text: PGFE, UMass Medical School

text: live

text: Generic

text: synthetic construct

text: B1H randomized library


Next-generation sequencing data

text: Pennsylvania State University

text: live

text: Generic

text: Saccharomyces cerevisiae

text: sequencing data for genome-wide reconstitution study


GHPSaa

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Compost inoculum for Zamora

text: compost metagenome

text: CTCTGacgggcggtgtgtRc

characteristic: primer

text: Sample from compost metagenome


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: GRU-IRB

text: Blood

characteristic: histological type

text: No

characteristic: is tumor

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Family/Twin/Trios

characteristic: study design

text: Aortic Diseases

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study NHLBI GO-ESP: Family Studies (Aortic Disease)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Blood

text: GRU-IRB

text: Blood

text: No

text: SNP Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: male

text: Family/Twin/Trios

text: Aortic Diseases

text: Yes

text: Non-tumor DNA sample from Blood of a human male participant in the dbGaP study NHLBI GO-ESP: Family Studies (Aortic Disease)

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: GRU-IRB

text: Blood

characteristic: histological type

text: No

characteristic: is tumor

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Family/Twin/Trios

characteristic: study design

text: Aortic Diseases

characteristic: study disease

text: NHLBI GO-ESP: Family Studies (Aortic Disease)

text: Yes


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: DNA

text: Blood

text: GRU-IRB

text: Blood

text: No

text: SNP Genotypes (NGS)

text: Homo sapiens

text: female

text: Family/Twin/Trios

text: Aortic Diseases

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


Dunaliella tertiolecta

text: Yale University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dunaliella tertiolecta UTEX 'LB 999'

characteristic: organism

text: Dunaliella tertiolecta UTEX LB 999

characteristic: title


name: Caenorhabditis elegans N2 late embryo RNA biological replicate LE-1

text: University of Washington Genome Sciences

text: live

text: Generic

text: C. elegans N2 late embryos total RNA; culture early embryos in supplemented S-basal media at 20 degree for 5-6 hrs. This sample is available through the modENCODE DCC (www.modencode.org) as: late_embryo_LE-1 This sample is a biological replicate for DCC project: late_embryo_20dC_4.5_hrs_post-early_embryo Local library name: N2_LE-1 Quality values are ASCII encoded Phred + 33. Flowcell 61AAMAAXX was processed with GAPipeline 1.5. Flowcells 61BDLAAXX and 61BDPAAXX were processed with GAPipeline 1.8.

characteristic: description

text: Caenorhabditis elegans


characteristic: External Id

text: live

text: Generic

text: Fungus Garden material from leaf-cutter ant nests

text: ant fungus garden metagenome

text: Gamboa, Panama

characteristic: sample location

text: Sample from ant fungus garden metagenome


name: Caenorhabditis elegans N2 mid-L4 male RNA sample 5

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: C. elegans N2 L4 male. Embryos are placed in S-basal buffer and incubated at 25 deg overnight to hatch the L1s. We then put the hatched L1s on a seeded NGM plate at 25 deg for 30 hours. At 30 hours, the resulting worms are in the L4 stage, and all are males because the hermpahrodites die due to a failure to initiate dosage compensation, as confirmed by examination under the dissecting microscope. This sample is available through the modENCODE DCC (www.modencode.org) as: Male_larva_mid-L4_L4MALE5 This sample is a biological replicate for DCC project: Male_larva_mid-L4_25dC_30_hrs_post-L1 Local library name: L4MALE5 Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

text: Caenorhabditis elegans


name: Caenorhabditis elegans dauer entry daf-2(el370) RNA sample 2

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: C. elegans N2 synchronized L1 worms cultured at 25°C for 48 hrs when there are about 50% worms are resistant to 1% SDS treatment (Dauer assay). This sample is available through the modENCODE DCC (www.modencode.org) as: dauer_entry_daf-2_DauerEntryDAF2-2 This sample is a biological replicate for DCC project: dauer_entry_daf-2(e1370)_25dC_48_hrs_post-L1 Local library name: DauerEntryDAF2-2 Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

text: Caenorhabditis elegans


text: University of Alaska Fairbanks

text: live

text: Generic

text: Bacteria

text: Stale isotope probing targeting methane-utilizing bacteria in arctic lake sediment


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN434

characteristic: sample name

characteristic: strain

text: Generic sample from Mycobacterium tuberculosis HN434


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN1135

text: Generic sample from Mycobacterium tuberculosis HN1135


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN1680

text: Generic sample from Mycobacterium tuberculosis HN1680


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN2863

text: Generic sample from Mycobacterium tuberculosis HN2863


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN2953

text: Generic sample from Mycobacterium tuberculosis HN2953


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN1150

text: Generic sample from Mycobacterium tuberculosis HN1150


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN2206

text: Generic sample from Mycobacterium tuberculosis HN2206


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN198

text: Generic sample from Mycobacterium tuberculosis HN198


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN3171

text: Generic sample from Mycobacterium tuberculosis HN3171


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN4143

text: Generic sample from Mycobacterium tuberculosis HN4143


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN733

text: Generic sample from Mycobacterium tuberculosis HN733


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN4112

text: Generic sample from Mycobacterium tuberculosis HN4112


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN139

text: Generic sample from Mycobacterium tuberculosis HN139


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN133

text: Generic sample from Mycobacterium tuberculosis HN133


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN268

text: Generic sample from Mycobacterium tuberculosis HN268


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN499

text: Generic sample from Mycobacterium tuberculosis HN499


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN1744

text: Generic sample from Mycobacterium tuberculosis HN1744


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN1523

text: Generic sample from Mycobacterium tuberculosis HN1523


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN2136

text: Generic sample from Mycobacterium tuberculosis HN2136


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN1380

text: Generic sample from Mycobacterium tuberculosis HN1380


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN2738

text: Generic sample from Mycobacterium tuberculosis HN2738


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN1151

text: Generic sample from Mycobacterium tuberculosis HN1151


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN1500

text: Generic sample from Mycobacterium tuberculosis HN1500


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN2492

text: Generic sample from Mycobacterium tuberculosis HN2492


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN2925

text: Generic sample from Mycobacterium tuberculosis HN2925


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN2163

text: Generic sample from Mycobacterium tuberculosis HN2163


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN1587

text: Generic sample from Mycobacterium tuberculosis HN1587


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN770

text: Generic sample from Mycobacterium tuberculosis HN770


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN1175

text: Generic sample from Mycobacterium tuberculosis HN1175


text: Broad Institute

text: live

text: Generic

text: Mycobacterium tuberculosis HN1210

text: Generic sample from Mycobacterium tuberculosis HN1210


text: University of Alaska Fairbanks

text: live

text: Generic

text: Bacteria

text: stable isotope probing methane-utilizing bacteria in arctic lake sediment


text: University of Alaska Fairbanks

text: live

text: Generic

text: Bacteria

text: Stable isotope probing targeting methane-utilizing bacteria in arctic lake sediment


LK-NW-W

text: University of Alaska Fairbanks

text: live

text: Generic

text: Bacteria

text: Methanotrophs in arctic lake water


LQ-BGC-W

text: University of Alaska Fairbanks

text: live

text: Generic

text: Bacteria

text: methanotrophs in arctic lake water


LQ-WEST-W

text: University of Alaska Fairbanks

text: live

text: Generic

text: Bacteria

text: Methanotrophs in arctic lake water


cDNA from P. yessoensis

text: Ocean University of China

text: live

text: Generic

text: Embryo and larva sample were collected at different stages, including the blastula, gastrula, trochophore and D-shaped larva stages. All samples were collected in liquid nitrogen and stored at -80*C until analysis. Four tissues, including the adductor muscle, digestive gland, male and female gonad, were dissected from the adult scallop. Total RNAs were extracted from these materials using the method described by Hu et al. (2006). cDNA samples were prepared following the protocol provided by Meyer et al. (2009). The larval library was normalized using the Trimmer Direct kit (Evrogen, Moscow, Russia) to prevent over-representation of the most common transcripts. In contrast, tissue libraries were non-normalized to facilitate the comparison of transcript expression profiles. A barcode system was used to discriminate samples from different libraries. Finally, samples from each library were combined into a single pool and mixed well. Approximately 5 μg of the mixed cDNA pool was used for a single run on the 454 GS FLX sequencer (Roche, Basel, Switzerland).

text: Mizuhopecten yessoensis

text: cDNA from embryos, larvae and adult tissues of P. yessoensis


endosperm BM

text: CAU

text: live

text: Generic

text: Maize endosperm from F1 of B73 X Mo17, 10 DAP.

text: Zea mays

text: maize endosperm B73 X Mo17, 10 DAP


endosperm MB

text: CAU

text: live

text: Generic

text: Maize endosperm form F1 of Mo17 X B73, 10 DAP.

text: Zea mays

text: maize endosperm Mo17 X B73, 10 DAP


kernel10 MB

text: CAU

text: live

text: Generic

text: maize kernel from F1 of Mo17 X B73, 10 DAP.

text: Zea mays

text: maize kernel Mo17 X B73, 10 DAP


kernel10 BM

text: CAU

text: live

text: Generic

text: Maize kernel from F1 of B73 X Mo17, 10 DAP.

text: Zea mays

text: maize kernel B73 X Mo17, 10 DAP


kernel468 BM

text: CAU

text: live

text: Generic

text: Maize kernel from F1 of B73 X Mo17 4,6,8 DAP were mixed.

text: Zea mays

text: maize kernel B73 X Mo17, 468 DAP


kernel468 MB

text: CAU

text: live

text: Generic

text: Maize kernel from F1 of Mo17 X B73 4,6,8 DAP were mixed.

text: Zea mays

text: Maize kernel from F1 of Mo17 X B73, 468 DAP


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: forest soil, Hainich, Germany, spruce age class forest,

text: Aspergillus lanosus

text: forrest soil, A horizon


Pe-leaf-ck

text: Beijing Forestry University

text: live

text: Generic

text: Populus euphratica

text: well-watered plant cDNA library


Pe-leaf-drought

text: Beijing Forestry University

text: live

text: Generic

text: Populus euphratica

text: drought-reponsive plant cDNA library


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis leaf


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis stem


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis root


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis mature leaf (population 1 2)


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis stem (population 1 2)


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis root (population 1 2)


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis callus


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis young leaf (population 3)


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis mature leaf (population 1)


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis mature leaf (population 2)


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis lateral roots (population 1)


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis lateral roots (population 2)


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis stem - petioles (population 1)


text: live

text: Generic

text: Valeriana officinalis

text: Valeriana officinalis stem - petioles (population 2)


text: Sidow Lab, Pathology, Stanford University

text: live

text: Generic

text: Granulocytes

characteristic: cell type

text: Homo sapiens

text: granulocytes

text: In vitro reconstituted nucleosome cores_3


text: Biochemistry and Molecular Biology, University of Southern Denmark

text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

characteristic: cell line

text: Preadipocyte

characteristic: differentiation stage

text: DNase I treated

characteristic: dnase treatment

text: Mus musculus

text: Preadipocyte cell line

text: day 0

characteristic: time

text: DHS-seq day 0


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 3T3-L1 preadipocyte cell line

text: Early stage

text: DNase I treated

text: Mus musculus

text: Preadipocyte cell line

text: 2 hours

text: DHS-seq 2 hours


characteristic: External Id

text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: Early stage

text: DNase I treated

text: Mus musculus

characteristic: organism

text: Preadipocyte cell line

text: 4 hours

text: DHS-seq 4 hours

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: Intermediate stage

text: DNase I treated

text: Mus musculus

text: Preadipocyte cell line

text: day 2

text: DHS-seq day 2


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: C/EBPbeta

characteristic: chip antibody

text: Preadipocyte

text: Mus musculus

text: Preadipocyte cell line

text: day 0

text: C/EBPbeta ChIP-seq day 0


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: C/EBPbeta

text: Early stage

text: Mus musculus

text: Preadipocyte cell line

text: 2 hours

text: C/EBPbeta ChIP-seq 2 hours


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: C/EBPbeta

text: Early stage

text: Mus musculus

text: Preadipocyte cell line

text: 4 hours

text: C/EBPbeta ChIP-seq 4 hours


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: C/EBPbeta

text: Intermediate stage

text: Mus musculus

text: Preadipocyte cell line

text: day 2

text: C/EBPbeta ChIP-seq day 2


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: C/EBPdelta

text: Preadipocyte

text: Mus musculus

text: Preadipocyte cell line

text: day 0

text: C/EBPdelta ChIP-seq day 0


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: C/EBPdelta

text: Early stage

text: Mus musculus

text: Preadipocyte cell line

text: 4 hours

text: C/EBPdelta ChIP-seq 4 hours


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: GR

text: Early stage

text: Mus musculus

text: Preadipocyte cell line

text: 4 hours

text: GR ChIP-seq 4 hours


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: Early stage

text: Mus musculus

text: Preadipocyte cell line

text: 4 hours

text: Stat5a ChIP-seq 4 hours


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: RXR

text: Early stage

text: Mus musculus

text: Preadipocyte cell line

text: 4 hours

text: RXR CHIP-seq 4 hours


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: PPARgamma

text: Intermediate stage

text: Mus musculus

text: Preadipocyte cell line

text: day 2

text: PPARgamma ChIP-seq day 2


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: RNA Pol II

text: Preadipocyte

text: Mus musculus

text: Preadipocyte cell line

text: day 0

text: RNA Pol II ChIP-seq day 0


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: RNA Pol II

text: Early stage

text: Mus musculus

text: Preadipocyte cell line

text: 4 hours

text: RNA Pol II ChIP-seq 4 hours


text: live

text: Generic

text: 3T3-L1 preadipocyte cell line

text: Mus musculus

text: Preadipocyte cell line

text: Input


name: Caenorhabditis elegans N2 larval L2 RNA biological replicate L2-4

text: University of Washington Genome Sciences

text: live

text: Generic

text: Exact times for growth after plating of starved L1s (all at 25 degrees C) were as follows: L2 worms were grown for 17.75 hours (Pn.p cells visible but not divided, gonad just starting to proliferate). This sample is available through the modENCODE DCC (www.modencode.org) as: larva_L2-4 This sample is a biological replicate for DCC project: mid-L2 Local library name: N2_L2-4 Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

characteristic: description

text: Caenorhabditis elegans


Apple snail adult transcriptome

text: Department of biology Hong Kong Baptist University

text: live

text: Generic

text: Adults apple snails were collected from Hong Kong wetland park. Total RNA from various body parts (head-foot, albumen gland, visceral mass and mantle) of three females and three males was extracted separately by using the TRIzol reagent (Invitrogen, Carsbad, CA, USA) following the manufacturer’s protocol. RNA integrity was checked by using argarose gel electrophoresis and 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA). Equal amounts of RNA fromdifferent tissues were pooled. cDNA library was constructed following a standard protocol that included the following steps: mRNA selection, fragmentation, double-stranded cDNA synthesis, cDNA fragment end repair, adaptor ligation, purification, and PCR enrichment.

text: Pomacea canaliculata

text: Generation and characterization of the transcriptome and proteome data of an invasive non-model gastropod


Pseudopolydora vexillosa

text: The Hong Kong University of Science and Tehcnology

text: live

text: Generic

text: Pseudopolydora vexillosa

text: Pseudopolydora vexillosa transcriptome submission


mRNA

text: Max Delbrueck Center for Molecular Medicine

text: live

text: Generic

text: Total RNA from asexual planaria was isolated using the standard Trizol protocol (Invitrogen) with an additional 70% ethanol precipitation step in the end. Poly A RNA was then purified by two rounds of selection using Dynabeads mRNA Purification Kit (Invitrogen) according to the manufacturer’s instructions and quantified by Nanodrop 7500 spectrophotometer. Sample quality was assessed by Bioanalyzer (Agilent Technologies).

text: Schmidtea mediterranea

text: mRNA preparation from total RNA of asexual planaria


text: Beijing Genome Institute

text: live

text: Generic

text: Nannochloropsis oceanica

text: Sample from Nannochloropsis oceanica


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: forest soil, Hainich, Germany, spruce age class forest

text: Aspergillus lanosus

text: forest soil, A horizon


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: forest soil, Hainich, Germany, beech age class forest

text: Aspergillus lanosus

text: forest soil, A horizon


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: forest soil, Hainich, Germany, unmanaged beech forest

text: Aspergillus lanosus

text: forest soil, A horizon


text: Biological Institute, University of Copenhagen

text: live

text: Generic

text: Lekberg et al. 454 Glomeromycota data from Plantago roots from disturbance (D) treatment

text: Glomeromycotina


text: live

text: Generic

text: Lekberg et al. 454 Glomeromycota data from Plantago roots from disturbance bucket (DB) treatment

text: Glomeromycotina


text: live

text: Generic

text: Lekberg et al. 454 Glomeromycota data from Plantago roots from control (C) treatment

text: Glomeromycotina


text: live

text: Generic

text: Lekberg et al. 454 Glomeromycota data from Plantago roots from natural occuring plants (N)

text: Glomeromycotina


text: live

text: Generic

text: Lekberg et al. 454 Glomeromycota data from Plantago roots from surrounding plants (S)

text: Glomeromycotina


text: Friedrich Miescher Institute for Biomedical Research

text: live

text: Generic

characteristic: antibody

characteristic: no

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

characteristic: strain

text: Embryonic Stem Cells (ESCs)

characteristic: tissue

text: Upstate

characteristic: vendor


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

text: Embryonic Stem Cells (ESCs)

text: Input


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: Terminally differentiated Neurons (TN)

text: Upstate


characteristic: External Id

text: live

text: Generic

text: Mus musculus

characteristic: organism

text: Embryonic Stem Cells (ESCs)

text: Embryonic Stem Cells (ESCs)


characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: Terminally differentiated Neurons (TN)

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Mus musculus

text: Embryonic Fibroblasts

text: Embryonic Fibroblasts


name: Caenorhabditis elegans N2 young adult YA RNA biological replicate Yad-1

text: University of Washington Genome Sciences

characteristic: INSDC secondary accession

text: live

text: Generic

text: Exact times for growth after plating of starved L1s (all at 25 degrees C) were as follows: Young Adult (pre-gravid) for 46 hours (vulvae fully formed and oocytes present in gonad, but no embryos). This sample is available through the modENCODE DCC (www.modencode.org) as: N2_Yad-1 This sample is a biological replicate for DCC project: Young Adult Local library name: N2_Yad-1 Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

text: Caenorhabditis elegans


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Streptococcus pneumoniae GA11663

text: Streptococcus pneumoniae GA11663


text: live

text: Generic

text: Streptococcus pneumoniae GA13494

text: Streptococcus pneumoniae GA13494


text: live

text: Generic

text: Streptococcus pneumoniae GA19077

text: Streptococcus pneumoniae GA19077


text: live

text: Generic

text: Streptococcus pneumoniae GA13455

text: Streptococcus pneumoniae GA13455


Apple snail

text: Department of biology Hong Kong Baptist University

text: live

text: Generic

text: Adults apple snails were collected from Hong Kong wetland park. Total RNA from various body parts (head-foot, albumen gland, visceral mass and mantle) of three females and three males was extracted separately by using the TRIzol reagent (Invitrogen, Carsbad, CA, USA) following the manufacturer's protocol. RNA integrity was checked by using argarose gel electrophoresis and 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA). Equal amounts of RNA fromdifferent tissues were pooled. cDNA library was constructed following a standard protocol that included the following steps: mRNA selection, fragmentation, double-stranded cDNA synthesis, cDNA fragment end repair, adaptor ligation, purification, and PCR enrichment.

characteristic: description

text: Pomacea canaliculata

text: Generation and characterization of the transcriptome and proteome data of an invasive non-model gastropod


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Hoodia gordonii

text: Hoodia gordonii Stem (Spines)


text: live

text: Generic

text: Hoodia gordonii

text: Hoodia gordonii Stem (Pith)


text: live

text: Generic

text: Hoodia gordonii

text: Hoodia gordonii Spines


text: live

text: Generic

text: Hoodia gordonii

text: Hoodia gordonii Pith


text: live

text: Generic

text: Streptococcus pneumoniae Netherlands15B-37

text: Streptococcus pneumoniae Netherlands 15B-37


text: live

text: Generic

text: Streptococcus pneumoniae GA14798

text: Streptococcus pneumoniae GA14798


text: live

text: Generic

text: Streptococcus pneumoniae GA52306

text: Streptococcus pneumoniae GA52306


text: live

text: Generic

text: Streptococcus pneumoniae GA16242

text: Streptococcus pneumoniae GA16242


text: live

text: Generic

text: Streptococcus pneumoniae GA11184

text: Streptococcus pneumoniae GA11184


text: live

text: Generic

text: Streptococcus pneumoniae GA13856

text: Streptococcus pneumoniae GA13856


text: live

text: Generic

text: Streptococcus pneumoniae GA17227

text: Streptococcus pneumoniae GA17227


text: live

text: Generic

text: Streptococcus pneumoniae GA17328

text: Streptococcus pneumoniae GA17328


text: live

text: Generic

text: Streptococcus pneumoniae GA41277

text: Streptococcus pneumoniae GA41277


text: live

text: Generic

text: Streptococcus pneumoniae GA47283

text: Streptococcus pneumoniae GA47283


text: live

text: Generic

text: Streptococcus pneumoniae GA17371

text: Streptococcus pneumoniae GA17371


text: live

text: Generic

text: Streptococcus pneumoniae GA41437

text: Streptococcus pneumoniae GA41437


text: live

text: Generic

text: Streptococcus pneumoniae GA16833

text: Streptococcus pneumoniae GA16833


text: live

text: Generic

text: Streptococcus pneumoniae GA17971

text: Streptococcus pneumoniae GA17971


text: live

text: Generic

text: Streptococcus pneumoniae GA47688

text: Streptococcus pneumoniae GA47688


text: Monash University

text: live

text: Generic

text: Pt139: type II MAP, isolated from human from a gut biopsy, patient lived in Australia and was diagnosed with early onset Crohn's disease

text: Mycobacterium avium subsp. paratuberculosis Pt139

text: Mycobacterium avium subsp. paratuberculosis isolate Pt139


text: Monash University

text: live

text: Generic

text: Pt144: type II MAP, isolated from human from a gut biopsy, patient lived in Australia and was diagnosed with early onset Crohn's disease

text: Mycobacterium avium subsp. paratuberculosis Pt144

text: Mycobacterium avium subsp. paratuberculosis isolate Pt144


text: Monash University

text: live

text: Generic

text: Pt145: type II MAP, isolated from human from a gut biopsy, patient lived in Australia and was diagnosed with early onset Crohn's disease

text: Mycobacterium avium subsp. paratuberculosis Pt145

text: Mycobacterium avium subsp. paratuberculosis isolate Pt145


text: Monash University

text: live

text: Generic

text: Pt146: type II MAP, isolated from human from a gut biopsy, patient lived in Australia and was diagnosed with early onset Crohn's disease

text: Mycobacterium avium subsp. paratuberculosis Pt146

text: Mycobacterium avium subsp. paratuberculosis isolate Pt146


text: Monash University

text: live

text: Generic

text: Pt154: type II MAP, isolated from human from a gut biopsy, patient lived in Australia and was diagnosed with gastritis

text: Mycobacterium avium subsp. paratuberculosis Pt154

text: Mycobacterium avium subsp. paratuberculosis isolate Pt154


text: Monash University

text: live

text: Generic

text: Pt155: type II MAP, isolated from human from a gut biopsy, patient lived in Australia and was diagnosed with spirochaetosis

text: Mycobacterium avium subsp. paratuberculosis Pt155

text: Mycobacterium avium subsp. paratuberculosis isolate Pt155


text: Monash University

text: live

text: Generic

text: Pt164: type II MAP, isolated from human from a gut biopsy, patient lived in Australia and was diagnosed with ulcerative colitis

text: Mycobacterium avium subsp. paratuberculosis Pt164

text: Mycobacterium avium subsp. paratuberculosis isolate Pt164


text: Monash University

text: live

text: Generic

text: CLIJ623: type II MAP, bovine isolate from gut at necropsy, isolate from Australia and the animal had clinical signs of Johne's disease

text: Mycobacterium avium subsp. paratuberculosis CLIJ623

text: Mycobacterium avium subsp. paratuberculosis strain CLIJ623


text: Monash University

text: live

text: Generic

text: CLIJ644: type II MAP, bovine isolate from gut at necropsy, isolate from Australia and the animal had clinical signs of Johne's disease

text: Mycobacterium avium subsp. paratuberculosis CLIJ644

text: Mycobacterium avium subsp. paratuberculosis strain CLIJ644


text: Monash University

text: live

text: Generic

text: CLIJ361: type I MAP, ovine isolate from gut at necropsy, isolate from Australia and the animal had clinical signs of Johne's disease

text: Mycobacterium avium subsp. paratuberculosis CLIJ361

text: Mycobacterium avium subsp. paratuberculosis strain CLIJ361


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Rauvolfia serpentina

text: Rauvolfia serpentina Normalized Mixed Tissue


text: live

text: Generic

text: Rauvolfia serpentina

text: Rauvolfia serpentina mature leaf (fully expanded)


text: live

text: Generic

text: Rauvolfia serpentina

text: Rauvolfia serpentina young leaves


text: live

text: Generic

text: Rauvolfia serpentina

text: Rauvolfia serpentina upper stem


text: live

text: Generic

text: Rauvolfia serpentina

text: Rauvolfia serpentina woody stem


text: live

text: Generic

text: Rauvolfia serpentina

text: Rauvolfia serpentina young roots


text: live

text: Generic

text: Rauvolfia serpentina

text: Rauvolfia serpentina mature roots


text: live

text: Generic

text: Rauvolfia serpentina

text: Rauvolfia serpentina red stem


text: live

text: Generic

text: Rauvolfia serpentina

text: Rauvolfia serpentina flower


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea Normalized Mixed Tissue


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea Normalized Mixed Tissue (cut with RE)


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea mature flower


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea sepals mature flower


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea immature flower


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea sepals immature flower


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea immature leaf


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea intermediate leaf petiole


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea young leaf


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea young leaf petiole


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea mature leaves


text: live

text: Generic

text: Digitalis purpurea

text: Digitalis purpurea mature leaf petiole


name: Chlamydia trachomatis D/UW-3 (CTD clone #1) and CTDtrpB- (DV7F10)

text: NIAID

text: live

text: Generic

text: Genome sequence analysis of Chlamydia trachomatis D/UW-3 clone #1 and the EMS mutant strain DV7F10

text: Chlamydia trachomatis D/UW-3/CX

text: Generation of targeted Chlamydia trachomatis null mutants


text: Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, CAS

text: live

text: Generic

text: newly formed fruiting bodies

characteristic: developmental stage

text: 14 days

characteristic: growth duration

text: silkmoth pupae

characteristic: growth medium

text: Cordyceps militaris

text: Newly formed fruiting-bodies

text: Cm 01

text: FB1 RNA_seq


text: live

text: Generic

text: middle-term fruiting bodies

text: 29 days

text: silkmoth pupae

text: Cordyceps militaris

text: Middle-term fruiting-bodies

text: Cm 01

characteristic: strain

text: FB2 RNA_seq


text: live

text: Generic

text: mature fruiting bodies

text: 59 days

text: silkmoth pupae

text: Cordyceps militaris

text: Mature fruiting-bodies

text: Cm 01

text: FB3 RNA_seq


text: live

text: Generic

text: mycelia

text: 3 days

text: liquid broth

text: Cordyceps militaris

text: Fungal mycelia grown in SDB culture

text: Cm 01

text: SDB RNA_seq


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Escherichia coli DEC12D

text: Escherichia coli DEC12D


ACP-Gut

text: University of Arizona

text: live

text: Generic

text: Diaphorina citri

text: Asian citrus psyllid uninfected gut


ACP-AdtLib

text: University of Arizona

text: live

text: Generic

text: Diaphorina citri

text: Asian citrus psyllid, adult whole-body liberibacter-infected


paired-end 1 of 1

text: Stowers Institute for Medical Research

text: live

text: Generic

text: The 454 reads are in two sets: paired-end and shotgun. There is one SFF for the paired-end reads and two SFF files for shotgun reads.

text: Schizosaccharomyces cryophilus OY26

text: Paired-end sequence reads (1/1)


Shotgun 1 of 2

text: Stowers Institute for Medical Research

text: live

text: Generic

text: Schizosaccharomyces cryophilus OY26

text: Shotgun sequence reads (1/2)


Shotgun 2 of 2

text: Stowers Institute for Medical Research

text: live

text: Generic

text: Schizosaccharomyces cryophilus OY26

text: Shotgun sequence reads (2/2)


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Phlebia brevispora HHB-7030 SS6

text: Phlebia brevispora HHB-7030 SS6

text: HHB-7030 SS6

text: Generic sample from Phlebia brevispora HHB-7030 SS6


name: 1129157413360 Ichthyophthirius multifiliis G5 strain Ich-PE-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Whole genome shotgun sequencing of Ichthyophthirius multifiliis

text: Ichthyophthirius multifiliis strain G5

text: Generic sample from Ichthyophthirius multifiliis strain G5


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: Biopsy

characteristic: histological type

text: male

characteristic: host sex

text: Yes

characteristic: is tumor

text: Pouch

characteristic: isolation source

text: 16s rRNA (NGS)

characteristic: molecular data type

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: study design

text: Pouchitis

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Human metagenome DNA sample from Pouch of a male participant in the dbGaP study The Role of the Gut Microbiota in Ulcerative Colitis


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: HMP

text: Biopsy

text: male

text: Yes

text: Pouch

text: 16s rRNA (NGS)

text: human metagenome

characteristic: organism

text: Prospective Longitudinal Cohort

text: Pouchitis

text: The Role of the Gut Microbiota in Ulcerative Colitis

text: Yes

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: luminal aspirate

characteristic: histological type

text: male

characteristic: host sex

text: Yes

characteristic: is tumor

text: Pouch

characteristic: isolation source

text: 16s rRNA (NGS)

characteristic: molecular data type

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: study design

text: Pouchitis

characteristic: study disease

text: Yes


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: DNA

text: HMP

text: luminal aspirate

text: male

text: Yes

text: Pouch

text: 16s rRNA (NGS)

text: Metagenome (NGS)

text: human metagenome

text: Prospective Longitudinal Cohort

text: Pouchitis

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


CM1145 Lane 5

text: Harvard University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Methylorubrum extorquens AM1

characteristic: organism

characteristic: strain

text: CM1145 Lane 5

characteristic: title


Chickpea

characteristic: External Id

text: National Institute of Plant Genome Research (NIPGR)

text: live

text: Generic

text: Shoot sample of chickpea was used for transcriptome sequencing on Roche 454 platform

characteristic: description

text: Cicer arietinum

text: Shoots

characteristic: tissue

text: Chickpea transcriptome pyrosequencing - shoots


text: Helicos BioSciences Corporation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Un-fragmented Total RNA fraction isolated from human K562 RNA purchased from Ambion and converted into cDNA using Random primers and processed using Helicos RNAseq protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

characteristic: INSDC secondary accession

text: live

text: Generic

text: Un-fragmented RiboMinus RNA fraction isolated from human Liver RNA purchased from Clontech and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 2 , scientist 1

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented polyA RNA fraction isolated from human Brain RNA purchased from Clontech using magnetic bead-based purification kit and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 2

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented polyA RNA fraction isolated from human Liver RNA purchased from Clontech using oligo-dT cellulose, two rounds and converted into cDNA using Random primers and processed using Helicos RNAseq protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented polyA RNA fraction isolated from human Brain RNA purchased from Clontech using magnetic bead-based purification kit and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 1

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented Total RNA fraction isolated from human Liver RNA purchased from Clontech and converted into cDNA using oligo-dT primers and processed using Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented polyA RNA fraction isolated from human Liver RNA purchased from Clontech using magnetic bead-based purification kit and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 1 , scientist 1

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented Total RNA fraction isolated from human Brain RNA purchased from Clontech and converted into cDNA using Random primers and processed using Helicos RNAseq protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented RiboMinus RNA fraction isolated from human Brain RNA purchased from Clontech and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 2

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented RiboMinus RNA fraction isolated from human Liver RNA purchased from Clontech and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 1 , scientist 2

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented Total RNA fraction isolated from human Liver RNA purchased from Clontech and converted into cDNA using Random primers and processed using Helicos RNAseq protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Fragmented polyA RNA fraction isolated from human Liver RNA purchased from Clontech and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 1 , scientist 2

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented polyA RNA fraction isolated from human Liver RNA purchased from Clontech using magnetic bead-based purification kit and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 3 , scientist 2

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Fragmented polyA RNA fraction isolated from human Liver RNA purchased from Clontech and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 3 , scientist 2

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented RiboMinus RNA fraction isolated from human K562 RNA purchased from Ambion and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 2

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented polyA RNA fraction isolated from human Liver RNA purchased from Clontech using oligo-dT cellulose, one round and converted into cDNA using Random primers and processed using Helicos RNAseq protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented RiboMinus RNA fraction isolated from human Brain RNA purchased from Clontech and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 1

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: Un-fragmented RiboMinus RNA fraction isolated from human Liver RNA purchased from Clontech and converted into cDNA using Random primers and processed using Helicos RNAseq protocol, technical replica 2 , scientist 2

text: Homo sapiens

text: Sample from Homo sapiens