characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K27me3

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: This data represents a control being compared to experiments using read length of 32 bp

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myocyte

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_H3K27me3_Control_32bp_EqS_2.0pct_60hr

characteristic: title

characteristic: treatment


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: immortalized

tag: attribute

text: Immortal cells

text: rabbit polyclonal. Antibody Target: H3K4me3

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

text: Millipore

text: Barbara Wold lab

text: Myoblast cell line derived from thigh muscle of C3H mice after crush injury

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: This data represents a control being compared to experiments using read length of 50 bp

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

text: Wold - Califonia Institute of Technology

characteristic: lab description

characteristic: labexpid

text: Myoblast

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_H3K4me3_Control_50bp

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myocyte

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_H3K4me3_Control_50bp_EqS_2.0pct_60hr

characteristic: title

characteristic: treatment

text: 60 h with 2.0% Equine Serum and Insulin (Wold)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: immortalized

text: Immortal cells

text: rabbit polyclonal. Antibody Target: H3K36me3

text: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.

text: Abcam

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myoblast

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_H3K36me3_Control_50bp

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myocyte

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_Input_Control_32bp_EqS_2.0pct_24hr

characteristic: title

characteristic: treatment

text: 24 h with 2.0% Equine Serum and Insulin (Wold)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: immortalized

text: Immortal cells

text: Input

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: This data represents a control being compared to experiments using read length of 32 bp

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myoblast

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_Input_Control_32bp

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myocyte

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_Input_Control_32bp_EqS_2.0pct_60hr

characteristic: title

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: immortalized

text: Immortal cells

text: Input

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Myoblast

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_Input_Control_50bp

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: rabbit polyclonal antibody raised against a KLH-conjugated peptide corresponding to amino acids 1-20 of Tetrahymena histone H3 (ARTKQTAR[K*]STGG[K*]APRKQLC) where K* is acetylated. Antibody Target: H3ac

characteristic: antibody antibodydescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Barbara Wold lab

characteristic: biomaterial provider

characteristic: cell

text: Myoblast cell line derived from thigh muscle of C3H mice after crush injury

characteristic: cell description

text: mouse

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Caltech-m

text: Myoblast

text: Mus musculus

characteristic: organism

characteristic: strain

text: Strain C3H, Very related to C57BL/6

text: Caltech_ChipSeq_C2C12_H3ac_(06-599)_Control_32bp

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: immortalized

text: Immortal cells

text: Millipore

text: Barbara Wold lab

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Caltech-m

characteristic: lab

text: Wold - Califonia Institute of Technology

characteristic: lab description

characteristic: labexpid

text: Myocyte

characteristic: labversion

text: Myocyte

characteristic: labversion description

text: Mus musculus

characteristic: replicate

text: Strain C3H, Very related to C57BL/6

characteristic: strain description

text: Caltech_ChipSeq_C2C12_H3ac_(06-599)_Control_32bp_EqS_2.0pct_24hr

characteristic: treatment

characteristic: treatment description


name: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000209

characteristic: External Id

text: seeds

characteristic: IFSAC Category

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: 650030 1-1

characteristic: fda lab id

text: sesame seed

characteristic: isolation source

text: sesame seed:FOODON_03310306

characteristic: ontological term

characteristic: organism

text: Bareilly

characteristic: serovar

text: Food

characteristic: source type

characteristic: strain

text: enterica

characteristic: sub species

characteristic: title


characteristic: External Id

text: Latif, University of California San Diego

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: atcc number

text: Wild type

characteristic: genotype/variation

text: log phase

characteristic: growth condition

text: maltose minimal media

characteristic: growth medium

text: Thermotoga maritima MSB8

text: T. maritima_WT_log phase

text: logphase_maltose minimal media

text: type strain of Thermotoga maritima

characteristic: type material


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Wild type

text: late exponential

text: maltose minimal media

text: Thermotoga maritima MSB8

text: T. maritima_WT_late exponential phase

text: late exponential (carbon limiting)_maltose minimal media

text: type strain of Thermotoga maritima


text: live

text: Generic

text: Wild type

text: heat shock

text: maltose minimal media

text: Thermotoga maritima MSB8

characteristic: organism

text: T. maritima_WT_heat shock

characteristic: strain

text: heat shock_maltose minimal media

text: type strain of Thermotoga maritima


text: live

text: Generic

text: Wild type

text: hydrogen inhibited

text: maltose minimal media

text: Thermotoga maritima MSB8

text: T. maritima_WT_hydrogen inhibited

text: hydrogen inhibited_maltose minimal media

characteristic: title

text: type strain of Thermotoga maritima


characteristic: External Id

text: live

text: Generic

text: Wild type

text: maltose minimal media

text: log phase

characteristic: growth stage

text: Thermotoga maritima MSB8

text: T. maritima_WT_log phase

text: logphase_maltose minimal media_replicate 1

text: type strain of Thermotoga maritima


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Wild type

text: maltose minimal media

text: log phase

text: Thermotoga maritima MSB8

text: T. maritima_WT_log phase

text: logphase_maltose minimal media_replicate 2

text: type strain of Thermotoga maritima


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

characteristic: sample name

text: aureus

characteristic: sub species

text: Generic sample from Staphylococcus aureus subsp. aureus KPL1845


text: Broad Institute

text: live

text: Generic

text: Generic

text: Propionibacterium sp. KPL1854

text: Generic sample from Propionibacterium sp. KPL1854


text: Broad Institute

text: live

text: Generic

text: Generic

text: human gut metagenome

text: Generic sample from unclassified Bacteria (miscellaneous)


text: Broad Institute

text: live

text: Generic

text: Generic

text: Corynebacterium sp. KPL1856

text: Generic sample from Corynebacterium sp. KPL1856


text: Broad Institute

text: live

text: Generic

text: Generic

text: Propionibacterium sp. KPL1844

text: Generic sample from Propionibacterium sp. KPL1844


text: Broad Institute

text: live

text: Generic

text: Generic

text: Propionibacterium sp. KPL1852

text: Generic sample from Propionibacterium sp. KPL1852


text: Broad Institute

text: live

text: Generic

text: Generic

text: Propionibacterium sp. KPL1838

text: Generic sample from Propionibacterium sp. KPL1838


text: Broad Institute

text: live

text: Generic

text: Generic

text: Female

characteristic: host sex

text: Granulicatella adiacens CC94D

text: Granulicatella adiacens CC94D

text: Generic sample from Granulicatella adiacens CC94D


text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: aureus

text: Generic sample from Staphylococcus aureus subsp. aureus KPL1828


PRJNA28331.Klebsiella pneumoniae 43816

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Klebsiella pneumoniae ATCC 43816

text: Klebsiella pneumoniae 43816

text: Generic sample from Klebsiella pneumoniae ATCC 43816


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Propionibacterium sp. KPL1849

text: Generic sample from Propionibacterium sp. KPL1849


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Propionibacterium sp. KPL1847

text: Generic sample from Propionibacterium sp. KPL1847


name: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000178

text: animal feed

characteristic: IFSAC+ Category

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: Generic

text: poultry meal

characteristic: isolation source

text: poultry by-product meal pbm:foodon_00002741

characteristic: ontological term

text: Bareilly

characteristic: serovar

text: Animal feed

characteristic: source type

text: enterica


characteristic: External Id

text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Plasmodium falciparum

characteristic: organism

text: Generic sample from Plasmodium falciparum

characteristic: title


text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Plasmodium falciparum

characteristic: sample name

characteristic: strain


text: Broad Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Plasmodium falciparum 3D7

text: Generic sample from Plasmodium falciparum 3D7


name: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000179

text: animal feed

characteristic: IFSAC+ category

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

text: USA:MS

characteristic: geo loc name

text: poultry feather meal

characteristic: label

text: feather:uberon_0000022, poultry by-product meal (pbm):foodon_00002741

text: Bareilly

text: enterica

characteristic: sub species


name: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000180

characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: Generic

characteristic: organism

text: Bareilly

characteristic: serovar

text: enterica

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: Testis

characteristic: cell

text: Testis

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

text: Ren - Ludwig Institue for Cancer Research

characteristic: lab description

text: 8/19/09 4

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Bowtie

characteristic: softwareversion

text: Testis

characteristic: strain

text: C57 black 6, the most common inbred strain of laboratory mouse

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: LICR lab

characteristic: biomaterial provider

text: tissue

characteristic: biomaterial type

text: mouse

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: LICR-m

text: 3/14/11 Lane 1

text: Mus musculus

characteristic: organism

text: male

characteristic: sex

text: Bowtie

text: Thymus

text: thymus

characteristic: tissue type

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Embryonic day 14.5

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: 1)Stam lab; 2)CSHL lab

text: WholeBrain

characteristic: cell

text: Whole Brain

characteristic: cell description

text: mouse

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 11/5/10 Lane 2

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Bowtie

characteristic: softwareversion

text: WholeBrain

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 12/8/2011 Lane 1-4 and 2/16/2012 Lane 4-4

text: Mus musculus

characteristic: organism

text: Bowtie

text: MEL

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Embryonic day 14.5

text: RNA Polymerase II

text: Covance

text: 1)LICR lab 2)CSHL lab

text: Limb

characteristic: cell

text: Limb

characteristic: cell description

text: mouse

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 11/30/10 Lane 1

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Bowtie

characteristic: softwareversion

text: Limb

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: CTCF

characteristic: antibody

text: rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: 1)LICR lab; 2)CSHL lab

characteristic: biomaterial provider

text: SmIntestine

text: Small Intestine

text: mouse

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 12/14/10 Lane 6

text: Mus musculus

characteristic: organism

text: Bowtie

text: SmIntestine

text: LICR_ChipSeq_SmIntestine_CTCF_adult-8wks

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Adult 8 weeks

text: RNA Polymerase II

text: Covance

text: 1)LICR lab; 2)CSHL lab

text: SmIntestine

characteristic: cell

text: Small Intestine

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 3/29/11 Lane 6

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Bowtie

characteristic: softwareversion

text: SmIntestine

characteristic: strain

characteristic: strain description

text: LICR_ChipSeq_SmIntestine_Pol2_adult-8wks


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: CTCF

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: Testis

text: Testis

text: mouse

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 8/19/09 Lane 6

text: Mus musculus

characteristic: organism

text: Bowtie

text: Testis

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

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text: Generic

text: immortalized

text: Input

characteristic: antibody description

text: Weissman lab

text: immortalized cell line

characteristic: biomaterial type

text: Leukemia (K562 analog)

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text: mouse

characteristic: cell organism

text: M

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text: std

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text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

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text: LICR-m

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text: 6/8/2011 Lane 5-1

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text: MEL

characteristic: line

text: Mus musculus

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text: Bowtie

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text: MEL

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characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

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characteristic: NCBI submission package

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text: Adult 24 weeks

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text: Input

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text: Jerrold M. Olefsky Lab, UCSD

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text: BAT

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text: Brown adipocytes tissue

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text: M

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text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

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text: Mus musculus

characteristic: organism

text: Bowtie

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characteristic: External Id

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text: Adult 8 weeks

text: Input

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text: OlfactBulb

text: Olfactory Bulb

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text: M

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text: std

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text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

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text: LICR-m

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text: LICR_ChipSeq_OlfactBulb_Input_adult-8wks


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text: Chromatin IP Sequencing

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text: ELAND

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text: SmIntestine

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text: Small Intestine

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text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

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text: Chromatin IP Sequencing

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text: 05/7/09 Lane 4

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text: ELAND

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text: Embryonic day 14.5

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text: Chromatin IP Sequencing

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text: RNA Polymerase II

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text: Covance

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text: Genhong Cheng Lab, UCLA

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text: Bone marrow derived macrophage

text: mouse

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text: std

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text: ChipSeq

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text: Chromatin IP Sequencing

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text: 8/18/2011 Lane 6-11

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text: Mus musculus

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text: Bowtie

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text: BMDM

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text: BoneMarrow

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text: Bone Marrow

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text: std

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text: Chromatin IP Sequencing

text: LICR-m

text: 11/05/09 Lane 3

text: Mus musculus

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text: LICR_ChipSeq_BoneMarrow_Input_adult-8wks

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characteristic: External Id

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text: Millipore

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text: ChipSeq

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text: Chromatin IP Sequencing

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text: 05/07/09 Lane 2

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text: Mus musculus

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text: Lung

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text: Chromatin IP Sequencing

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text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

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text: LICR-m

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text: Mus musculus

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text: Lung

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characteristic: External Id

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text: Cerebellum

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text: Cerebellum

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text: M

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text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 05/26/09 Lane 7

text: Mus musculus

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text: ELAND

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characteristic: External Id

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text: Millipore

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text: Genhong Cheng Lab, UCLA

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text: ChipSeq

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text: Chromatin IP Sequencing

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text: Mus musculus

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text: Bowtie

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text: BMDM

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text: std

text: ChipSeq

text: Chromatin IP Sequencing

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text: Mus musculus

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text: ChipSeq

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text: Chromatin IP Sequencing

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text: LICR-m

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text: 05/26/09 Lane 2

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text: Mus musculus

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text: Heart

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text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 9/8/10 3

text: Mus musculus

characteristic: organism

text: Bowtie

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characteristic: External Id

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text: 1)Stam lab; 2)CSHL lab

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text: Whole Brain

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text: U

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text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

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text: LICR-m

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text: 11/30/10 Lane 6

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text: Mus musculus

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text: Bowtie

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text: WholeBrain

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text: ChipSeq

text: Chromatin IP Sequencing

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text: ChipSeq

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text: Chromatin IP Sequencing

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text: 05/26/09 Lane 5

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text: Mus musculus

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text: Cortex

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text: ChipSeq

text: Chromatin IP Sequencing

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text: ChipSeq

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text: Chromatin IP Sequencing

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text: 3/14/11 Lane 4

characteristic: labversion

text: Mus musculus

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text: RNA Polymerase II

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text: Olfactory Bulb

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text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 3/14/11 Lane 5

text: Mus musculus

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characteristic: External Id

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characteristic: INSDC center name

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text: ChipSeq

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text: Mus musculus

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text: Genhong Cheng Lab, UCLA

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text: Bone marrow derived macrophage

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text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 4/6/2011 Lane 4-4

text: Mus musculus

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text: Bowtie

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characteristic: INSDC center name

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text: RNA Polymerase II

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text: ChipSeq

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text: Chromatin IP Sequencing

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text: LICR-m

characteristic: lab

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text: 04/20/09 Lane 2

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: ELAND

characteristic: softwareversion

text: Liver

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text: Lung

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text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 04/29/09 Lane 7

text: Mus musculus

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text: ELAND

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characteristic: External Id

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text: Mouse Embryonic Fibroblast

text: mouse

characteristic: cell organism

text: M

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text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

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characteristic: lab

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text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

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text: Mus musculus

characteristic: organism

text: Bowtie

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text: LICR lab

text: Thymus

text: Thymus

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 3/14/11 Lane 3

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Bowtie

characteristic: softwareversion

text: Thymus

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: CTCF

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: MEF

characteristic: cell

text: Mouse Embryonic Fibroblast

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 08/17/09 Lane 7

text: Mus musculus

characteristic: organism

text: ELAND

text: MEF

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: immortalized

text: Immortal cells

text: CTCF

text: Millipore

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 10/10/2011 Lane 1-11 and 2/2/2012 Lane 3-11

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Bowtie

characteristic: softwareversion

text: MEL

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: CTCF

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: 1) LICR lab; 2)Stam Lab

characteristic: biomaterial provider

text: Spleen

characteristic: cell

text: Spleen

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 09/19/10 Lane 8B

text: Mus musculus

characteristic: organism

text: Bowtie

text: Spleen

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Adult 8 weeks

text: RNA Polymerase II

text: Covance

text: 1) LICR lab; 2)Stam Lab

text: Spleen

text: Spleen

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 07/22/10 Lane 3

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: ELAND

characteristic: softwareversion

text: Spleen

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: Rabbit Polyclonal. Antibody Target: P300

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: Heart

characteristic: cell

text: Heart

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 01/05/10 Lane 3

text: Mus musculus

characteristic: organism

text: ELAND

text: Heart

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Embryonic day 0 (stem cell)

text: RNA Polymerase II

text: Covance

text: University of California, San Diego Transgenic Core and Embryonic Stem Cell

text: mouse embryonic stem cells

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 12/23/09 SOLEXA1 Lane 1

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Bowtie

characteristic: softwareversion

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

characteristic: biomaterial provider

characteristic: cell

text: mouse embryonic stem cells

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 12/23/09 SOLEXA2 Lane 3

text: Mus musculus

characteristic: organism

text: ELAND

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Adult 8 weeks

text: Input

characteristic: antibody description

text: LICR lab

text: Testis

text: Testis

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 2/9/11 Lane 3

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Bowtie

characteristic: softwareversion

text: Testis

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

text: Input

characteristic: antibody

text: 1)Stam lab; 2)CSHL lab

characteristic: biomaterial provider

text: tissue

characteristic: biomaterial type

text: mouse

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: LICR-m

text: 7/28/10 Lane 4

text: Mus musculus

characteristic: organism

text: not determined

characteristic: sex

text: Bowtie

text: WholeBrain

text: Whole Brain

characteristic: tissue type

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Embryonic day 14.5

text: Input

characteristic: antibody description

text: LICR lab

text: Liver

characteristic: cell

text: Liver

characteristic: cell description

text: mouse

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 6/18/10 Lane 6

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: Bowtie

characteristic: softwareversion

text: Liver

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Input

characteristic: antibody

characteristic: antibody description

characteristic: biomaterial provider

text: mouse embryonic stem cells

characteristic: biomaterial type

text: mouse

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 12/04/09 Lane 1

characteristic: line

text: Mus musculus

characteristic: organism

text: ELAND

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Adult 8 weeks

text: Input

text: LICR lab

text: tissue

text: mouse

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: donor id

text: LICR-m

characteristic: lab

characteristic: lab description

text: 05/07/09 Lane 3

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: male

characteristic: sex

text: ELAND

characteristic: softwareversion

text: Heart

characteristic: strain

characteristic: strain description

text: heart

characteristic: tissue type


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: CTCF

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: Heart

characteristic: cell

text: Heart

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 05/04/09 Lane 7

text: Mus musculus

characteristic: organism

text: ELAND

text: Heart

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Adult 8 weeks

text: CTCF

text: Millipore

text: LICR lab

text: BoneMarrow

text: Bone Marrow

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 11/19/09 Lane 1, 12/14/09 Lane 1

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: ELAND

characteristic: softwareversion

text: BoneMarrow

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Stam lab

characteristic: biomaterial provider

text: Kidney

characteristic: cell

text: Kidney

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 05/27/09 Lane 2

text: Mus musculus

characteristic: organism

text: ELAND

text: Kidney

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Adult 8 weeks

text: CTCF

text: Millipore

text: 1)LICR lab; 2)CSHL lab

text: Cerebellum

text: Cerebellum

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 08/17/09 Lane 6

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: ELAND

characteristic: softwareversion

text: Cerebellum

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: LICR lab

characteristic: biomaterial provider

text: BoneMarrow

characteristic: cell

text: Bone Marrow

characteristic: cell description

text: mouse

text: M

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: Ren - Ludwig Institue for Cancer Research

text: 12/09/09 Lane 3

text: Mus musculus

characteristic: organism

text: ELAND

text: BoneMarrow

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Adult 8 weeks

text: RNA Polymerase II

text: Covance

text: LICR lab

text: MEF

text: Mouse Embryonic Fibroblast

text: mouse

characteristic: cell organism

text: M

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: 05/19/10 Lane 2

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: ELAND

characteristic: softwareversion

text: MEF

characteristic: strain

text: C57 black 6, the most common inbred strain of laboratory mouse

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: LICR lab

characteristic: biomaterial provider

text: Placenta

characteristic: cell

text: Placenta

characteristic: cell description

text: mouse

text: F

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: 1/18/11 Lane 1

text: Mus musculus

characteristic: organism

text: Bowtie

text: Placenta

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Adult 8 weeks

text: Input

text: 1) LICR lab; 2)Stam Lab

text: tissue

characteristic: biomaterial type

text: mouse

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: donor id

text: LICR-m

characteristic: lab

characteristic: lab description

text: 07/28/10 Lane 7

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: male

characteristic: sex

text: ELAND

characteristic: softwareversion

text: Spleen

characteristic: strain

characteristic: strain description

text: Spleen

characteristic: tissue type


Crotalus simus Adult

characteristic: External Id

text: IBV-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Crotalus simus

characteristic: organism

text: Adult 454 Titanium and Ion Torrent reads from Crotalus simus

characteristic: title


Crotalus simus Newborn

text: IBV-CSIC

text: live

text: Generic

text: Crotalus simus

text: Newborn 454 Titanium and Ion Torrent reads from Crotalus simus


TMPRSS2-ERG Breakpoint Resequencing

text: Johns Hopkins University

text: live

text: Generic

text: Fresh frozen blocks from prostate tissues were obtained from 83 men who underwent radical prostatectomy at the Johns Hopkins Hospital for treatment of primary prostate cancer. Tissues were trimmed to yield tissues sections containing &gt;70% tumor nuclei and subjected to DNA isolation. Genomic DNA from the VCaP prostate cancer cell line, known to harbor a TMPRSS2-ERG rearrangement, was included. A total of six reference specimens were also included. Three of these consisted of genomic DNA isolated from 3 prostate cancer cases in which the TMPRSS2-ERG rearrangement breakpoints had been determined previously using Sanger sequencing. An additional 3 reference samples were generated by whole genome amplification of the first three reference samples using the GenomiPhi kit (GE Healthcare Life Sciences) according to the manufacturer’s instructions.Samples were divided evenly into 6 groups, with each group containing 14 genomic DNA samples from the primary prostate cancers or the VCaP cell line and one reference sample. The DNA samples within each group were pooled (600ng/sample). For each pooled sample, libraries for sequencing on the Illumina Genome Analyzer platform were generated. Library fragments were then enriched for TMPRSS2 and ERG sequences using the Agilent SureSelect Custom Target Enrichment System (Agilent, Santa Clara, CA) according to the manufacturer’s protocols. Briefly, a custom oligo capture library containing 9995 RNA baits covering the TMPRSS2 (hg18, chr21:41738351-41841779) and ERG (chr21:38650671-38979461) loci with flanking regions on the sense strand to achieve a 30x/base bait redundancy was designed using the Agilent eArray online tool using the option to exclude known repetitive sequences. Enriched pools were then amplified for 18 cycles using adapter-specific primers. Paired-end sequencing with 50 bp reads was carried out on an Illumina Genome Analyzer (Illumina, San Diego, CA) according to the manufacturer’s protocols.

characteristic: description

text: Homo sapiens

text: Genomic Analysis of TMPRSS2-ERG Breakpionts in Prostate Cancer


text: Baylor College of Medicine

text: live

text: Generic

characteristic: genetic background

text: wild type

characteristic: genotype/variation

text: Saccharomyces cerevisiae

text: Wild-type YMW5 092109

text: Wild-type YMW5 092109


text: Baylor College of Medicine

text: live

text: Generic

text: wild type

text: Saccharomyces cerevisiae

text: Wild-type YMW5 012210 1

text: Wild-type YMW5 012210 1


text: Baylor College of Medicine

text: live

text: Generic

text: wild type

text: Saccharomyces cerevisiae

text: Wild-type YMW5 012210 2

text: Wild-type YMW5 012210 2


text: Baylor College of Medicine

text: live

text: Generic

text: TUP1 knock out

text: Saccharomyces cerevisiae

text: Tup1 YMW97 012210

text: Tup1 YMW97 012210


text: Baylor College of Medicine

text: live

text: Generic

text: TUP1 knock out

text: Saccharomyces cerevisiae

text: Tup1 YMW97 052410

text: Tup1 YMW97 052410


text: Baylor College of Medicine

text: live

text: Generic

text: TUP1 knock out

text: Saccharomyces cerevisiae

text: Tup1 YMW97 092109

text: Tup1 YMW97 092109


text: Baylor College of Medicine

text: live

text: Generic

text: Ssn6 knockout

text: Saccharomyces cerevisiae

text: Ssn6 YMW130 052410

text: Ssn6 YMW130 052410


text: Baylor College of Medicine

text: live

text: Generic

text: Ssn6 knockout

text: Saccharomyces cerevisiae

text: Ssn6 YMW131 122909

text: Ssn6 YMW131 122909


text: Baylor College of Medicine

text: live

text: Generic

text: Ssn6 knockout

text: Saccharomyces cerevisiae

text: Ssn6 YMW147 052410

text: Ssn6 YMW147 052410


text: Lynn Lab, Animal & Bioscience, Teagasc

text: live

text: Generic

text: Continental

characteristic: breed

characteristic: day post weaning

text: calf

characteristic: developmental stage

text: Bos taurus

text: control

characteristic: sample type

text: Leukocytes from calves housed with their dam, day 0 post-weaning

text: leukocytes

characteristic: tissue

text: housed with their dam

characteristic: treatment


characteristic: External Id

text: Lynn Lab, Animal & Bioscience, Teagasc

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Continental

text: calf

text: Bos taurus

text: control

text: Leukocytes from calves housed with their dam, day 1 post-weaning

text: leukocytes

text: housed with their dam


text: Lynn Lab, Animal & Bioscience, Teagasc

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Continental

text: calf

text: Bos taurus

text: control

text: Leukocytes from calves housed with their dam, day 2 post-weaning

text: leukocytes

text: housed with their dam


text: Lynn Lab, Animal & Bioscience, Teagasc

text: live

text: Generic

characteristic: SRA accession

text: Continental

text: calf

text: Bos taurus

characteristic: organism

text: control

text: Leukocytes from calves housed with their dam, day 7 post-weaning

text: leukocytes

characteristic: title

text: housed with their dam


text: Lynn Lab, Animal & Bioscience, Teagasc

text: live

text: Generic

text: Continental

characteristic: breed

text: calf

text: Bos taurus

text: Leukocytes from calves housed and simultaneously weaned, day 0 post-weaning

text: leukocytes

text: housed and simultaneously weaned


text: Lynn Lab, Animal & Bioscience, Teagasc

text: live

text: Generic

text: Continental

characteristic: day post weaning

text: calf

text: Bos taurus

text: Leukocytes from calves housed and simultaneously weaned, day 1 post-weaning

text: leukocytes

text: housed and simultaneously weaned


text: Lynn Lab, Animal & Bioscience, Teagasc

text: live

text: Generic

text: Continental

text: calf

characteristic: developmental stage

text: Bos taurus

text: Leukocytes from calves housed and simultaneously weaned, day 2 post-weaning

text: leukocytes

text: housed and simultaneously weaned


text: Lynn Lab, Animal & Bioscience, Teagasc

text: live

text: Generic

text: Continental

text: calf

text: Bos taurus

text: Leukocytes from calves housed and simultaneously weaned, day 7 post-weaning

text: leukocytes

text: housed and simultaneously weaned


text: ENCODE DCC

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: Nucleosome

characteristic: datatype

text: Nucleosome Position

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Coriell

text: lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: Nucleosome

text: Nucleosome Position

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism


name: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000215

text: crustaceans

characteristic: IFSAC Category

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: Generic

characteristic: biosamplemodel

characteristic: fda lab id

text: shrimp

characteristic: isolation source

characteristic: ontological term

text: Bareilly

characteristic: serovar

text: Food

characteristic: source type

characteristic: strain

text: enterica

characteristic: sub species

characteristic: title


characteristic: External Id

text: University of Michigan

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: hydrothermal vent metagenome

text: Guaymas Basin Hydrothermal Vent Metatranscriptome - 454 GD7


gut metagenome default sample

text: CSISP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: gut metagenome default sample

characteristic: description

text: gut metagenome

text: gut metagenome default sample


text: Beijing Institute of Genomics

text: live

text: Generic

characteristic: SRA accession

text: cultured Chlorella ellipsoidea cells

characteristic: cell type

text: GmDof4 transgenic

characteristic: genotype/variation

text: Pseudochlorella pringsheimii

characteristic: organism

text: GmDof4 transgenic strain Dof4-1

characteristic: strain/background


text: Beijing Institute of Genomics

text: live

text: Generic

text: cultured Chlorella ellipsoidea cells

text: pCK transgenic

text: Pseudochlorella pringsheimii

text: control

characteristic: sample type

text: pCK transgenic line CK-1

text: CK


text: DOE Joint Genome Institute

text: live

text: Generic

text: Soda Solonchak soil 2KS_010_SOIL

text: salt lake metagenome

characteristic: sample number

text: Generic sample from salt lake metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Soda Reactor TP_S13sol

text: salt lake metagenome

characteristic: title


characteristic: External Id

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Escherichia coli K-12 isolate MT203

text: Escherichia coli str. K-12 substr. MG1655

characteristic: strain

text: Escherichia coli K-12 isolate MT203


text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Soda Lake 4KL_010_BRINE

text: salt lake metagenome


text: DOE Joint Genome Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Amazon Pasture72 2010 replicate I A100

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Soda Lake 3KL_010_SED

text: salt lake metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Amazon Pasture72 2010 replicate I A10

characteristic: description

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: SRA accession

text: Soda Reactor TP_S3

text: salt lake metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Soda Solonchak soil 3KL_010_SOIL

text: salt lake metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Soda Lake 9KL_010_SED

text: salt lake metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Soda Lake 8KL_010_SED

text: salt lake metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Soda Lake 7KL_010_BRINE

text: salt lake metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Soda Lake 5KL_010_BRINE

text: salt lake metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Amazon Pasture72 2010 replicate I A1

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Amazon Pasture72 2010 replicate I A01

text: soil metagenome

text: Generic sample from soil metagenome


Barley Flow-Sorted

text: University of California, Riverside

text: live

text: Generic

text: Hordeum vulgare subsp. vulgare

text: Flow-Sorted Chromosome 1H and arms of 2H-7H


text: DOE Joint Genome Institute

text: live

text: Generic

text: Amazon Forest 2010 replicate II A100

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Amazon Forest 2010 replicate II A1

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Soda Lake 6KL_011_BRINE

text: salt lake metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Amazon Forest 2010 replicate II A10

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Amazon Forest 2010 replicate II A01

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Amazon Forest 2010 replicate II A001

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Soda Lake 5KL_010_SED

text: salt lake metagenome


454 ROC Norm

text: University of Puerto Rico

text: live

text: Generic

text: Poly(A) RNA was extracted from 38 uninjured animals.

text: Holothuria glaberrima

text: Non-normalized library, uninjured radial organ complex of Holothuria glaberrima, 454 pyrosequencing


text: DOE Joint Genome Institute

text: live

text: Generic

text: Soda Lake 1KL_011_SED

text: salt lake metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Arabidopsis Col-0 young rhizosphere DNA

text: rhizosphere metagenome

text: Generic sample from rhizosphere metagenome


454 ROC days 2&6

text: University of Puerto Rico

text: live

text: Generic

text: Poly(A) RNA was extracted from 63 animals on day 2 post-injury and 71 animals on day 6 post-injury. Equal quantities of RNA samples from these two samples were mixed together to generate the combined sample.

text: Holothuria glaberrima

text: Non-normalized library, regenerating radial organ complex of Holothuria glaberrima, days 2 and 6 post-injury, 454 pyrosequencing


454 ROC days 12 & 20

text: University of Puerto Rico

text: live

text: Generic

text: Poly(A) RNA was extracted from 62 animals on day 12 post-injury and 66 animals on day 20 post-injury. Equal quantities of RNA samples from these two samples were mixed together to generate the combined sample.

text: Holothuria glaberrima

text: Non-normalized library, regenerating radial organ complex of Holothuria glaberrima, days 12 and 20 post-injury, 454 pyrosequencing


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Plasmodium falciparum

characteristic: sample name

text: Generic sample from Plasmodium falciparum


text: DOE Joint Genome Institute

text: live

text: Generic

text: Arabidopsis Col-0 old rhizosphere DNA

text: rhizosphere metagenome

characteristic: organism


454 ROC pooled

text: University of Puerto Rico

text: live

text: Generic

text: Equal quantities of poly(A) RNA isolated from the intact and regenerating radial organs (days 2 & 6 and days 12 & 20 post-injury) were pooled together and subjected to normalization procedure with a TRIMMER kit (Evrogen)

text: Holothuria glaberrima

text: Pooled normalized library, normal and regenerating radial organ complex of Holothuria glaberrima, 454 pyrosequencing


Illumina ROC Norm #1

text: University of Puerto Rico

text: live

text: Generic

text: Total RNA was extracted from 4 intact animals. RNA Integrity Number (RIN) 7.5

text: Holothuria glaberrima

text: Uninjured radial organ complex of Holothuria glaberrima, Library #1, Illumina sequencing


Illumina ROC Norm #2

text: University of Puerto Rico

text: live

text: Generic

text: Total RNA was extracted from 3 intact animals

text: Holothuria glaberrima

text: Uninjured radial organ complex of Holothuria glaberrima, Library #2, Illumina sequencing


Illumina ROC Day 2 #1

text: University of Puerto Rico

text: live

text: Generic

text: Total RNA was extracted from 20 regenerating animals

text: Holothuria glaberrima

text: Regenerating radial organ complex of Holothuria glaberrima, day 2 post-injury, Library #1, Illumina sequencing


Illumina ROC Day2 #2

text: University of Puerto Rico

text: live

text: Generic

text: Total RNA was extracted from 19 regenerating animals

text: Holothuria glaberrima

text: Regenerating radial organ complex of Holothuria glaberrima, day 2 post-injury, Library #2, Illumina sequencing


Illumina ROC Day 12 #1

text: University of Puerto Rico

text: live

text: Generic

text: Holothuria glaberrima

text: Regenerating radial organ complex of Holothuria glaberrima, day 12 post-injury, Library #1, Illumina sequencing


Illumina ROC Day 12 #2

text: University of Puerto Rico

text: live

text: Generic

text: Holothuria glaberrima

text: Regenerating radial organ complex of Holothuria glaberrima, day 12 post-injury, Library #2, Illumina sequencing


Illumina ROC Day 20 #1

text: University of Puerto Rico

text: live

text: Generic

text: Total RNA was extracted from 15 regenerating animals

text: Holothuria glaberrima

text: Regenerating radial organ complex of Holothuria glaberrima, day 20 post-injury, Library #1, Illumina sequencing


Illumina ROC Day 20 #2

text: University of Puerto Rico

text: live

text: Generic

text: Holothuria glaberrima

text: Regenerating radial organ complex of Holothuria glaberrima, day 20 post-injury, Library #2, Illumina sequencing


text: DOE Joint Genome Institute

text: live

text: Generic

text: Arabidopsis cpr5 old rhizosphere DNA

text: rhizosphere metagenome

text: Generic sample from rhizosphere metagenome


text: Shelley L. Berger, Cell and Developmental Biology, University of Pennsylvania

text: live

text: Generic

text: Major

characteristic: caste

text: Colony C4 from Florida Keys, FL, USA

characteristic: colony

text: Input

characteristic: modification

text: Camponotus floridanus

text: Head and thorax from adult ants

text: Cflo.Major.Input


characteristic: External Id

text: live

text: Generic

text: Minor

text: Colony C4 from Florida Keys, FL, USA

text: Input

text: Camponotus floridanus

text: Head and thorax from adult ants

text: Cflo.Minor.Input

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: Male

text: Colony C4 from Florida Keys, FL, USA

text: Input

text: Camponotus floridanus

text: Head and thorax from adult ants

text: Cflo.Male.Input


characteristic: INSDC first public

text: live

text: Generic

text: Abcam

characteristic: antibody vendor

text: Major

text: Colony C4 from Florida Keys, FL, USA

text: Camponotus floridanus

text: Head and thorax from adult ants


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Abcam

text: Minor

text: Colony C4 from Florida Keys, FL, USA

text: Camponotus floridanus

text: Head and thorax from adult ants


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Abcam

text: Male

text: Colony C4 from Florida Keys, FL, USA

text: Camponotus floridanus

text: Head and thorax from adult ants


text: live

text: Generic

characteristic: NCBI submission package

text: Active Motif

text: Major

text: Colony C4 from Florida Keys, FL, USA

text: Camponotus floridanus

text: Head and thorax from adult ants


text: live

text: Generic

characteristic: SRA accession

text: Active Motif

text: Minor

text: Colony C4 from Florida Keys, FL, USA

text: Camponotus floridanus

text: Head and thorax from adult ants


text: live

text: Generic

text: Active Motif

text: Male

text: Colony C4 from Florida Keys, FL, USA

text: Camponotus floridanus

text: Head and thorax from adult ants


text: live

text: Generic

text: Millipore

text: Major

text: Colony C4 from Florida Keys, FL, USA

text: Camponotus floridanus

text: Head and thorax from adult ants


text: live

text: Generic

text: Millipore

text: Minor

text: Colony C4 from Florida Keys, FL, USA

text: Camponotus floridanus

text: Head and thorax from adult ants


text: live

text: Generic

text: Millipore

text: Male

text: Colony C4 from Florida Keys, FL, USA

text: Camponotus floridanus

text: Head and thorax from adult ants


text: live

text: Generic

text: Custom recombinant

text: Major

text: Colony C4 from Florida Keys, FL, USA

text: RNA Pol II

text: Camponotus floridanus

text: Head and thorax from adult ants

text: Cflo.Major.PolII


text: live

text: Generic

text: Custom recombinant

text: Minor

text: Colony C4 from Florida Keys, FL, USA

text: RNA Pol II

text: Camponotus floridanus

text: Head and thorax from adult ants

text: Cflo.Minor.PolII


text: live

text: Generic

text: Custom recombinant

text: Male

text: Colony C4 from Florida Keys, FL, USA

text: RNA Pol II

text: Camponotus floridanus

text: Head and thorax from adult ants

text: Cflo.Male.PolII


text: live

text: Generic

text: Custom recombinant

text: Major

text: Colony C4 from Florida Keys, FL, USA

text: CREB binding protein

text: Camponotus floridanus

text: Head and thorax from adult ants

text: Cflo.Major.CBP


text: live

text: Generic

text: Custom recombinant

text: Minor

text: Colony C4 from Florida Keys, FL, USA

text: CREB binding protein

text: Camponotus floridanus

text: Head and thorax from adult ants

text: Cflo.Minor.CBP


text: live

text: Generic

text: Major

text: Colonies C4+C31 from Florida Keys, FL, USA

text: Input

text: Camponotus floridanus

text: Whole-brain dissection from adult ants

text: Cflo.Major.Brain.Input


text: live

text: Generic

text: Minor

text: Input

text: Camponotus floridanus

text: Whole-brain dissection from adult ants

text: Cflo.Minor.Brain.Input


text: live

text: Generic

text: Abcam

text: Major

text: Camponotus floridanus

text: Whole-brain dissection from adult ants


text: live

text: Generic

text: Abcam

text: Minor

text: Camponotus floridanus

text: Whole-brain dissection from adult ants


text: live

text: Generic

text: Major

text: Colony from Florida Keys, FL, USA

text: RNA (polyA+)

text: Camponotus floridanus

text: Head and thorax from adult ants

text: Cflo.Major.RNA


text: live

text: Generic

text: Minor

text: Colony from Florida Keys, FL, USA

text: RNA (polyA+)

text: Camponotus floridanus

text: Head and thorax from adult ants

text: Cflo.Minor.RNA


text: live

text: Generic

text: Minor

text: RNA (polyA+)

text: Camponotus floridanus

text: Whole-brain dissection from adult ants


text: live

text: Generic

text: Major

text: Colony from Florida Keys, FL, USA

text: RNA (polyA+)

text: Camponotus floridanus

text: Whole-brain dissection from adult ants


text: live

text: Generic

text: Major

text: RNA (polyA+)

text: Camponotus floridanus

text: Whole-brain dissection from adult ants


text: live

text: Generic

text: Minor

text: Colony from Florida Keys, FL, USA

text: RNA (polyA+)

text: Camponotus floridanus

text: Whole-brain dissection from adult ants


text: INSERM

text: live

text: Generic

text: Raji-cells

characteristic: cell line

text: Burkitt's lymphoma

characteristic: cell type

text: Chromatin IP against Total PolII

characteristic: chip

text: Wild-type

characteristic: genotype/variation

text: Homo sapiens

text: Raji-cells


text: INSERM

text: live

text: Generic

text: Raji-cells

text: Burkitt's lymphoma

text: Chromatin IP against PolII phosphorylated at Serine 5

text: Wild-type

text: Homo sapiens

characteristic: organism

text: Raji-cells