characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: KAP1

text: Abcam

text: ATCC

text: embryonic kidney, cells contain Adenovirus 5 DNA (PMID: 11967234)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

tag: attribute

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Farnham lab

characteristic: biomaterial provider

text: PBDE

characteristic: cell

text: peripheral blood-derived erythroblasts

text: mesoderm

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

text: Farnham - University of Southern California

characteristic: lab description

text: Homo sapiens

text: PBDE

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Rabbit polyclonal - Antiserum 2663 was raised by immunizing rabbits with synthetic peptide CSDRYRIYKAQKLRE (human Bdp1 residues 139?153) coupled to KLH. Antibody Target: BDP1

characteristic: antibody antibodydescription

text: 'B double-prime 1', subunit of RNA polymerase III transcription initiation factor IIIB

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Donated by Dr. RJ White, The Beatson Institute for Cancer Research

characteristic: antibody vendorname

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

text: Struhl - Harvard University

text: fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads

characteristic: labversion

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal - Anti-BRF antibody 128 was raised by immunising rabbits with synthetic peptide KISSKINYSVLRGLS (human BRF residues 533-547) coupled to keyhole limpet haemocyanin. Antibody Target: BRF1

text: 'B-related factor 1', subunit of RNA polymerase III transcription initiation factor IIIB

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

characteristic: lab

text: Struhl - Harvard University

characteristic: lab description

text: Illumina 2.0, low confidence sequences excluded, fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: TR4

characteristic: antibody antibodydescription

text: (Also: NR2C2) Members of the nuclear hormone receptor family, such as NR2C2, act as ligand-activated transcription factors. The proteins have an N-terminal transactivation domain, a central DNA-binding domain with 2 zinc fingers, and a ligand-binding domain at the C terminus.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Donated by Dr. J.D.Engel, University of Michigan

characteristic: antibody vendorname

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

text: Fragmented using Bioruptor, precipitated with protein A agarose beads, PeakSeq 1.0 (fdr 0.001) Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal IgG, epitope corresponding to a.a. 232-281 mapping at the C-terminus of E2F-6 of human origin. Antibody Target: E2F6

text: This gene encodes a member of the E2F transcription factor protein family. E2F family members play a crucial role in control of the cell cycle and of the action of tumor suppressor proteins. They are also a target of the transforming proteins of small DNA tumor viruses. Many E2F proteins contain several evolutionarily conserved domains: a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. The encoded protein of this gene is atypical because it lacks the transactivation and tumor suppressor protein association domains. It contains a modular suppression domain and is an inhibitor of E2F-dependent transcription. The protein is part of a multimeric protein complex that contains a histone methyltransferase and the transcription factors Mga and Max. Multiple transcript variants have been reported for this gene, but it has not been clearly demonstrated that they encode valid isoforms (RefSeq).

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cancer

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

characteristic: lab

characteristic: lab description

text: Fragmented using Bioruptor, precipitated with StaphA PeakSeq 1.0 (fdr 0.001) Lane A is Illumina 2.0, low confidence sequences excluded

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: SETDB1

characteristic: antibody antibodydescription

text: SET domain, bifurcated 1, the SET domain is a highly conserved, approximately 150-amino acid motif implicated in the modulation of chromatin structure

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Proteintech Group

characteristic: antibody vendorname

text: ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

text: Farnham - University of Southern California

text: Fragmented using Bioruptor, precipitated with StaphA

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: remapped from hg18

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment

text: Interferon gamma treatment - 6 hours (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: E2F4

characteristic: antibody antibodydescription

text: mapping at the C-terminus of E2F4 of human origin

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

text: Fragmented using Bioruptor, precipitated with StaphA (replicate 1) or protein A agarose beads (replicate 2), PeakSeq 1.0 (fdr 0.001) Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

text: cancer

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

characteristic: lab

characteristic: lab description

text: Illumina 2.0, low confidence sequences excluded

characteristic: line

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: c-Jun

text: Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun

characteristic: antibody antibodydescription

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

text: Snyder - Yale University

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: treatment

text: Interferon gamma treatment - 30 minutes (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

text: RNA Polymerase II

text: Covance

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody description

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Struhl laboratory

characteristic: biomaterial provider

text: mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER)

text: normal

text: ectoderm

text: human

text: F

text: input library was prepared at Harvard.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens

characteristic: replicate

text: Harvard_ChipSeq_MCF10A-Er-Src_Input_Harvard_Control


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: TBP

text: Mouse monoclonal. Immunogen is synthetic peptide conjugated to KLH derived from within residues 1 - 100 of HumanTATA binding protein TBP. Antibody Target: TBP

characteristic: antibody antibodydescription

text: General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

text: lymphoblastoid cell line, Instability of heterochromatin of chromosomes 1, 9, and 16 with variable combined immunodeficiency; dysmorphic facial features, developmental delay, malabsorption, and recurrent infections; see GM08747 Fibroblast; donor subject is a compound heterozygote: one allele has a G>A transition at nucleotide 1807 (1807G>A) of the DNMT3B gene resulting in an Ala to Thr substitution at codon 603 [Ala603Thr (A603T)], the mutation occurring in a region between motifs I and IV within the catalytic domain of DNMT3B; the second allele has a G>A transition within intron 22 located 11 nucleotides 5-prime of the normal splice acceptor site [IVS22AS,G>A,-11] resulting in the generation of a novel splice acceptor site and a 9-bp insertion in the processed RNA. This results in the insertion of 3 amino acids (serine, threonine, and proline) at codon 744 (744ins3). The insertion was within the conserved region of the catalytic domain, which is likely to be disrupted by the insertion of a proline residue. This mutation was de novo.

text: mesoderm

text: human

text: F

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

text: Homo sapiens

characteristic: replicate

text: USC_ChipSeq_GM08714_Input_UCDavis (superseded by GSE136428)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal against peptide conjugated to KLH derived from within residues 1600 - 1700 of S. cerevisiae RNA polymerase II CTD repeat YSPTSPS, phosphorylated at S2. Antibody Target: POL2S2

characteristic: antibody antibodydescription

text: RNA polymerase II, large subunit- specific for phosphorylated C-terminal domain.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM12878_Pol2(phosphoS2)_IgG-mus

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal recognizing a region between residue 1800 and the C-terminus (residue 1863) of human Breast Cancer Gene 1. Antibody Target: BRCA1

text: Nuclear phosphoprotein that plays a role in maintaining genomic stability, and acts as a tumor suppressor. Associates with RNA polymerase II, and through the C-terminal domain, also interacts with histone deacetylase complexes. Plays a role in transcription, DNA repair of double-stranded breaks, and recombination. Mutations in this gene are responsible for approximately 40% of inherited breast cancers and more than 80% of inherited breast and ovarian cancers.

text: Bethyl Labratories

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_HepG2_BRCA1_(A300-000A)_IgG-rab

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal raised against epitope mapping at the C-terminus of NF-E2 p18 of mouse origin; recommended for detection of NF-E2 p18 (MafK) of mouse, rat and human origin. Antibody Target: MafK

characteristic: antibody antibodydescription

text: NFE2 DNA-binding activity consists of a heterodimer containing an 18-kD Maf protein (MafF, MafG, or MafK) and p45. Both subunits are members of the activator protein-1 superfamily of basic leucine zipper (bZIP)proteins. Since they lack a putative transactivation domain, small Mafs behave as transcriptional repressors when they dimerize among themselves. They serve as transcriptional activators by dimerizing with other (usually larger) bZip proteins and recruiting them to specific DNA-binding sites.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HepG2_MafK_(SC-477)_IgG-rab

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat polyclonal, epitope mapping near the C-terminus of CTCF of human origin. Antibody Target: CTCF

text: Transcriptional regulator with 11 highly conserved zinc finger domains. Depending on context, can bind a histone acetyltransferase (HAT)-containing complex and function as transcriptional activator or bind a histone deacetylase (HDAC)-containing complex and function as transcriptional repressor. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation. Can dimerize, mediating long-range chromatin looping. When bound to chromatin, provides an anchor point for nucleosomes positioning. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites.

text: Santa Cruz Biotech

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_GM12878_CTCF_(SC-15914)_std


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: rabbit polyclonal to STAT1 (alpha) p-91 (C-24). Antibody Target: STAT1

characteristic: antibody antibodydescription

text: transcription factor, activated by interferon signalling

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal against human ZNF143 (amino acids 283-626)-6his fusion protein. Antibody Target: Znf143

text: Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates to efficient U6 RNA polymerase III transcription via its interaction with CHD8

text: Proteintech

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_GM12878_Znf143_(16618-1-AP)_std


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: c-Jun

text: Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun

characteristic: antibody antibodydescription

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: WiCell Research Institute

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal anti-SPT20 antibody (3006), Immunogen: C-terminal region of mSPT20 (330-531 aa) is cloned in pET28b and over expressed in E. Coli. Protein was purified on Ni-NTA exchange column. Sequence: mSPT20 (330-531 amino acids). Antibody Target: SPT20

text: Also known as FAM48A or P38IP. It is a component of SAGA complex. Required for MAP kinase p38 (MAPK11, MAPK12, MAPK13 and/or MAPK14) activation during gastrulation. Required for down-regulation of E-cadherin during gastrulation by regulating E-cadherin protein level downstream from NCK-interacting kinase (NIK) and independently of the regulation of transcription by Fgf signaling and Snail.

text: Laszlo Tora

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal, maps to a region between residues 350 and the C-terminus (residue 412). Antibody Target: BHLHE40

characteristic: antibody antibodydescription

text: This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differentiation.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Novus

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_K562_BHLHE40_(NB100-1800)_IgG-rab

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

text: pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.

text: cancer

text: endoderm

text: human

text: M

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

characteristic: line

text: Homo sapiens

characteristic: replicate

text: USC_ChipSeq_PANC-1_Input_UCDavis (superseded by GSE86663)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat polyclonal IgG. Antibody Target: HNF4A

characteristic: antibody antibodydescription

text: epitope mapping at the C-terminus of Rab 11 of human origin

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Forskolin_Control.

characteristic: labversion

text: Homo sapiens

text: Stanford_ChipSeq_HepG2_forskolin_HNF4A_std

text: forskolin

characteristic: treatment

text: low-glucose DMEM with 0.5% BSA supplemented with 1uM forskolin and 1mM pyruvate for 6h. (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal IgG. Antibody Target: GRp20

text: epitope mapping at the C-terminus of GR alpha of human origin

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_HepG2_forskolin_GRp20_std

characteristic: title

text: forskolin

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ERRA

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Ets-1 of human origin. Antibody Target: ERRA

characteristic: antibody antibodydescription

text: epitope corresponding to amino acids 81-160 mapping near the N-terminus of ERRalpha of human origin

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: labversion

text: Homo sapiens

text: Stanford_ChipSeq_HepG2_forskolin_ERRA_std

text: forskolin

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CEBPB

text: Rabbit polyclonal IgG. Antibody Target: CEBPB

text: epitope mapping at the C-terminus of C/EBP-beta of rat origin

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_HepG2_forskolin_CEBPB_std

characteristic: title

text: forskolin

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal IgG. Antibody Target: PGC1A

characteristic: antibody antibodydescription

text: The protein encoded by this gene is a transcriptional coactivator that regulates the genes involved in energy metabolism. This protein interacts with PPARgamma, which permits the interaction of this protein with multiple transcription factors. This protein can interact with, and regulate the activities of, cAMP response element binding protein (CREB) and nuclear respiratory factors (NRFs).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: labversion

text: Homo sapiens

text: Stanford_ChipSeq_HepG2_forskolin_PGC1A_std

text: forskolin

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal. Antibody Target: RAD21

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

text: Abcam

text: ATCC

characteristic: cell

text: fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit monoclonal antibody is produced by immunizing animals with a synthetic peptide corresponding to residues surrounding Glu81 of human TCF7L2. Antibody Target: TCF7L2

characteristic: antibody antibodydescription

text: TCF7L2 (formerly known as TCF4) is a member of the high mobility group (HMG) DNA binding protein family of transcription factors which consists of the following: Lymphoid enhancer factor 1 (LEF1), T Cell Factor 1 (TCF1), TCF3 and TCF4. Note: there is an official TCF-4 http://www.genecards.org/cgi-bin/carddisp.pl?gene=TCF4&search=TCF4

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Cell Signaling Technology

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

text: Homo sapiens

text: USC_ChipSeq_HeLa-S3_TCF7L2_C9B9_(2565)_UCDavis


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal IgG. Antibody Target: HSF1

text: epitope corresponding to amino acids 219-529 of heat shock transcription factor 1 (HSF1) of human origin

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Forskolin_Control.

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_HepG2_forskolin_HSF1_std

characteristic: title

text: forskolin

characteristic: treatment

text: low-glucose DMEM with 0.5% BSA supplemented with 1uM forskolin and 1mM pyruvate for 6h. (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: SREBP1

characteristic: antibody antibodydescription

text: Sterol regulatory element binding transcription factor 1

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Insulin_Control.

text: Homo sapiens

text: Stanford_ChipSeq_HepG2_insulin_SREBP1_std

text: insulin

text: DMEM with 0.5% BSA supplemented with 100 nM insulin and 10 uM 22-hydroxycholesterol for 6 h. (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

text: RNA Polymerase II

text: Covance

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_HepG2_forskolin_Pol2_std

characteristic: title

text: forskolin

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CEBPB

text: Rabbit polyclonal IgG. Antibody Target: CEBPB

characteristic: antibody antibodydescription

text: epitope mapping at the C-terminus of C/EBP-beta of rat origin

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, Data paired with IgG_Control.

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Brg-1 (G-7) is a mouse monoclonal antibody raised against amino acids 209-296 mapping near the N-terminus of Brg-1 of human origin. Antibody Target: BRG1

text: Brg1 (SMARCA4) is an ATPase subunit of the SWI/SNF chromatin-remodeling complex.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded. Data paired with IgG_Control.

characteristic: labversion

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Ini1 (C-20) is an affinity purified goat polyclonal antibody raised against a peptide mapping near the C-terminus of Ini1 of human origin. Antibody Target: INI1

characteristic: antibody antibodydescription

text: Ini1 (BAF47, SMARCB1) is a ubiquitous 47 kD component of the SWI/SNF chromatin-remodeling complex.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: labversion

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mouse monoclonal, Immunogen corresponding to amino acids 201-286 of Human NRF1. Antibody Target: NRF1

characteristic: antibody antibodydescription

text: NRF1 is the mammalian homolog to the erect wing (ewg) Drosophila protein that is required for proper development of the central nervous system and indirect flight muscles. In mammals NRF1 functions as a transcription factor that activates the expression of the EIF2S1 (EIF-alpha) gene. This protein links the transcriptional modulation of key metabolic genes to cellular growth and development, and has been implicated in the control of nuclear genes required for respiration, heme biosynthesis and mitochondrialDNA transcription and replication. NRF1 forms a homodimer and binds DNA as a dimer. NRF1 shows a nuclear localization and is expressed widely in embryonic, fetal and adult tissues. Phosphorylation of NRF1 enhances DNA binding.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, Data set paired with HeLa-S3_MouseIgG_Control.

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: BAF155 (H-76) is a rabbit polyclonal antibody raised against amino acids 998-1073 of BAF155 of human origin. Antibody Target: BAF155

text: BAF155 (SMARCC1, Brg1-Associated Factor, 155 kD) is a ubiquitous component of the SWI/SNF chromatin-remodeling complex.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: labversion

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: BAF170 (H-116) is a rabbit polyclonal antibody raised against amino acids 1093-1208 of BAF170 of human origin. Antibody Target: BAF170

characteristic: antibody antibodydescription

text: BAF170 (Brg1-Associated Factor, 170 kD) is a ubiquitous component of the SWI/SNF chromatin-remodeling complex.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

text: lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: labversion

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Coriell

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded. Data paired with GM12892_IgG_Control.

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: Struhl laboratory

characteristic: biomaterial provider

text: mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER)

text: normal

text: ectoderm

text: human

text: F

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mouse monoclonal, immunogen:UBTF (NP_055048, 551 a.a. ~ 651 a.a) partial recombinant protein with GST tag. Antibody Target: UBTF

characteristic: antibody antibodydescription

text: Upstream binding factor (UBF) is a transcription factor required for expression of the 18S, 5.8S, and 28S ribosomal RNAs, along with SL1 (a complex of TBP (MIM 600075) and multiple TBP-associated factors or 'TAFs'). Two UBF polypeptides, of 94 and 97 kD, exist in the human (Bell et al., 1988 (PubMed 3413483)). UBF is a nucleolar phosphoprotein with both DNA binding and transactivation domains. Sequence-specific DNA binding to the core and upstream control elements of the human rRNA promoter is mediated through several HMG boxes

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Sigma-Aldrich

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_K562_UBTF_(SAB1404509)_IgG-mus

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

text: Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/

characteristic: biomaterial provider

text: acute promyelocytic leukemia cell line. (PMID: 1995093)

text: cancer

text: mesoderm

text: human

text: U

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Max

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

characteristic: antibody antibodydescription

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal against peptide conjugated to KLH derived from within residues 1600 - 1700 of S. cerevisiae RNA polymerase II CTD repeat YSPTSPS, phosphorylated at S2. Antibody Target: POL2S2

text: RNA polymerase II, large subunit- specific for phosphorylated C-terminal domain.

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

text: Stanford_ChipSeq_K562_Pol2(phosphoS2)_std

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mouse monoclonal. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2

characteristic: antibody antibodydescription

text: Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3').

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: RAD21

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mouse monoclonal, Immunogen corresponding to amino acids 201-286 of Human NRF1. Antibody Target: NRF1

characteristic: antibody antibodydescription

text: NRF1 is the mammalian homolog to the erect wing (ewg) Drosophila protein that is required for proper development of the central nervous system and indirect flight muscles. In mammals NRF1 functions as a transcription factor that activates the expression of the EIF2S1 (EIF-alpha) gene. This protein links the transcriptional modulation of key metabolic genes to cellular growth and development, and has been implicated in the control of nuclear genes required for respiration, heme biosynthesis and mitochondrialDNA transcription and replication. NRF1 forms a homodimer and binds DNA as a dimer. NRF1 shows a nuclear localization and is expressed widely in embryonic, fetal and adult tissues. Phosphorylation of NRF1 enhances DNA binding.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: JunD

characteristic: antibody

text: rabbit polyclonal IgG. Antibody Target: JunD

text: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal; epitope corresponding to amino acids 1-425 of IRF-3 of human origin. Antibody Target: IRF3

characteristic: antibody antibodydescription

text: Mediates interferon-stimulated response element (ISRE) promoter activation. DsRNA leads to IRF3 phosphorylation on the C-terminal serine/threonine cluster. This induces a conformational change, leading to its dimerization, nuclear localization and association with CREB binding protein (CREBBP) to form dsRNA-activated factor 1 (DRAF1), a complex which activates the transcription of genes under the control of ISRE.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Santa Cruz Biotech

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit Polyclonal, epitope: 1-230 mapping at the N-terminus of NF-E2 of human origin. Antibody Target: NF-E2

characteristic: antibody antibodydescription

text: Transcription factor NF-E2 45 kDa subunit is a component of the NF-E2 complex and essential for regulating erythroid and megakaryocytic maturation and differentiation. Binds to the hypersensitive site 2 (HS2) of the beta-globin control region (LCR). This subunit (NFE2)recognizes the TCAT/C sequence of the AP-1-like core palindrome present in a number of erythroid and megakaryocytic gene promoters. Requires MAFK or other small MAF proteins for binding to the NF-E2 motif. May play a role in all aspects of hemoglobin production from globin and heme synthesis to procurement of iron. NFE2 has been shown to interact with CREB binding protein.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM12878_NF-E2_(SC-22827)_std

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, immunogen: Recombinant full length protein (Human). Antibody Target: TBLR1

text: F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation

text: Abcam

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

text: Stanford_ChipSeq_GM12878_TBLR1_(ab24550)_IgG-mus

characteristic: treatment description


text: The Ohio State University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Zea mays subsp. mays

characteristic: organism

text: The maize pericarp transcriptome

characteristic: title


male #1 intestine

characteristic: External Id

text: University of Colorado School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Ascaris suum

text: male #1 intestine


male #1 carcass

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Ascaris suum

text: male #1 carcass


female #1 intestine

text: live

text: Generic

text: Ascaris suum

text: female #1 intestine


female #1 carcass

text: live

text: Generic

text: Ascaris suum

text: female #1 carcass


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: None WCE

characteristic: antibody catalog number

text: REH

characteristic: cell type

text: Homo sapiens

text: REH


text: live

text: Generic

text: Abcam AB3594

text: REH

characteristic: chip antibody

text: Homo sapiens

text: REH

text: MGG2 = (H3K79 REH)_ChipSeq


text: live

text: Generic

text: Abcam AB8580

text: REH

text: Homo sapiens

text: REH

text: MGG7= H3K4REH110907.M1_ChipSeq


text: live

text: Generic

text: None WCE

text: SEM

text: Homo sapiens

text: SEM


text: live

text: Generic

text: Abcam AB3594

text: SEM

text: Homo sapiens

text: SEM

text: MGG4 = H3K79 SEM_ChipSeq


text: live

text: Generic

text: Abcam AB8580

text: SEM

text: Homo sapiens

text: SEM

text: MGG8= H3K4SEM110907.M3_ChipSeq


text: live

text: Generic

text: Abcam AB33382

text: 50 million

characteristic: cell number

text: SEM

characteristic: library prep protocol

text: Homo sapiens

characteristic: replicate

text: SEM

text: HOXA9 ChIP-Seq in SEM Rep 1


text: live

characteristic: INSDC status

text: Generic

text: Abcam AB19867

text: 50 million

text: SEM

text: Homo sapiens

text: SEM

text: MEIS1 ChIP-seq in SEM Rep 2


text: live

text: Generic

characteristic: NCBI submission model

text: Abcam AB33382

text: 50 million

text: SEM

text: Homo sapiens

text: SEM

text: HOXA9 ChIP-Seq in SEM Rep 2


text: live

text: Generic

text: Abcam AB19867

text: 50 million

text: SEM

text: Homo sapiens

characteristic: organism

text: SEM

text: MEIS1 ChIP-seq in SEM Rep 1


text: East building #321, Environmental Science and Ecological Engineering, Korea university

text: live

text: Generic

text: Wild type

characteristic: genotype

text: exponential

characteristic: growth phase

text: Acinetobacter oleivorans

text: stationary cells

characteristic: strain

characteristic: title

text: type strain of Acinetobacter oleivorans

characteristic: type material


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Wild type

text: exponential

text: Acinetobacter oleivorans

text: stationary cells

text: norfloxacin (4μg/ml) over a period of 15 min

characteristic: treatment

text: type strain of Acinetobacter oleivorans


text: Mello, Program in Molecular Medicine, University of Massachusetts Medical School

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: wild type

characteristic: genotype/variation

text: Neurospora crassa

text: wild type

text: wt


text: live

characteristic: INSDC status

text: Generic

text: TSN mutant

text: Neurospora crassa

text: tsn mutant

text: tsn


text: Plant Science, Southern Cross University

text: live

text: Generic

characteristic: NCBI submission model

text: Banks

characteristic: cultivar

text: 6 DPA

characteristic: developmental stage

text: Triticum aestivum

text: Seed

text: Aleurone

characteristic: tissue

text: 6 DPA Al


text: live

text: Generic

text: Banks

text: 6 DPA

text: Triticum aestivum

characteristic: organism

text: Seed

text: Starchy endosperm

text: 6 DPA En


text: live

text: Generic

text: Banks

text: 9 DPA

text: Triticum aestivum

text: Seed

text: Aleurone

text: 9 DPA Al

characteristic: title


text: live

text: Generic

text: Banks

text: 9 DPA

text: Triticum aestivum

text: Seed

text: Starchy endosperm

text: 9 DPA En


text: live

text: Generic

text: Banks

text: 14 DPA

text: Triticum aestivum

text: Seed

text: Aleurone

text: 14 DPA Al


text: live

text: Generic

text: Banks

text: 14 DPA

text: Triticum aestivum

text: Seed

text: Starchy endosperm

text: 14 DPA En


text: Dr. Vivian G. Cheung Lab, Pediatrics&Genetics, HHMI/University of Pennsylvania

text: live

text: Generic

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12750

characteristic: biomaterial provider

characteristic: cell line

text: B-cells

characteristic: cell type

text: Non-directional

characteristic: directional rnaseq

text: cDNAbaseline

characteristic: experiment

text: Homo sapiens

text: cultured B-cells

text: no


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12004

text: B-cells

text: Non-directional

text: cDNAbaseline

text: Homo sapiens

text: cultured B-cells

text: no


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: B-cells

text: Directional

text: cDNAdirectional

text: Homo sapiens

text: cultured B-cells

text: no

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission model

text: B-cells

text: Directional

text: cDNAdirectional

text: Homo sapiens

text: cultured B-cells

text: no


text: live

text: Generic

text: B-cells

text: Directional

text: cDNAdirectional

text: Homo sapiens

characteristic: organism

text: cultured B-cells

text: siRNA knockdown of ADAR1


text: live

text: Generic

text: B-cells

text: Directional

text: cDNAdirectional

text: Homo sapiens

text: cultured B-cells

characteristic: title

text: non-targeting control siRNA


text: live

text: Generic

characteristic: biomaterial provider

text: B-cells

text: Non-directional

text: cDNA-NTC-siRNA

text: Homo sapiens

text: cultured B-cells

text: non-targeting control siRNA


text: live

text: Generic

characteristic: cell line

text: B-cells

text: Non-directional

text: Homo sapiens

text: cultured B-cells

text: siRNA knockdown of ADAR1


text: live

text: Generic

text: B-cells

characteristic: cell type

text: Non-directional

text: cDNA-NTC-siRNA

text: Homo sapiens

text: cultured B-cells

text: non-targeting control siRNA


text: live

text: Generic

text: B-cells

text: Non-directional

characteristic: directional rnaseq

text: Homo sapiens

text: cultured B-cells

text: siRNA knockdown of ADAR1


text: live

text: Generic

text: B-cells

text: Non-directional

characteristic: experiment

text: Homo sapiens

text: cultured B-cells

text: siRNA knockdown of ADAR2


characteristic: External Id

text: live

text: Generic

text: B-cells

text: Non-directional

text: Adar1-KD-A Time24h

text: Homo sapiens

text: cultured B-cells

text: siRNA knockdown of ADAR1, 24 hour time point


characteristic: INSDC center name

text: live

text: Generic

text: B-cells

text: Non-directional

text: Homo sapiens

text: cultured B-cells

text: siRNA knockdown of ADAR1, 48 hour time point


characteristic: INSDC first public

text: live

text: Generic

text: B-cells

text: Non-directional

text: Homo sapiens

text: cultured B-cells

text: siRNA knockdown of ADAR1, 72 hour time point


characteristic: INSDC last update

text: live

text: Generic

text: B-cells

text: Non-directional

text: Homo sapiens

text: cultured B-cells

text: siRNA knockdown of ADAR1, 96 hour time point


characteristic: INSDC secondary accession

text: live

text: Generic

text: B-cells

text: Non-directional

text: NTC- D-Time

text: Homo sapiens

text: cultured B-cells

text: non-targeting control siRNA, 96 hour time point


text: live

characteristic: INSDC status

text: Generic

text: B-cells

text: Non-directional

text: Homo sapiens

text: cultured B-cells

text: RNA-IP using ADAR1 antibody


text: live

text: Generic

characteristic: NCBI submission package

text: B-cells

text: Non-directional

text: RNAIP-IgG

text: Homo sapiens

text: cultured B-cells

text: RNA-IP using control IgG


text: live

text: Generic

characteristic: SRA accession

text: B-cells

text: Non-directional

text: Homo sapiens

text: cultured B-cells

text: RNA-IP using ADAR1 antibody


text: live

text: Generic

text: B-cells

text: Non-directional

text: RNAIP-IgG

text: Homo sapiens

text: cultured B-cells

text: RNA-IP using control IgG

characteristic: treatment


text: Neurodevelopment, Institut de Génomique Fonctionelle de Lyon

text: live

text: Generic

characteristic: NCBI submission model

text: C17.2 neural progenitor cells stably expressing tagged thyroid hormone receptor alpha

text: Protein G

characteristic: chap tag

text: Mus musculus

text: C17.2a neural progenitor cells, TRa ChAP


text: live

text: Generic

text: C17.2 neural progenitor cells stably expressing tagged thyroid hormone receptor beta

text: Protein G

text: Mus musculus

characteristic: organism

text: C17.2b neural progenitor cells, TRb ChAP

characteristic: title


text: live

text: Generic

text: sc-774x lot #F1609

characteristic: antibody catalog number

text: Santa Cruz

characteristic: antibody vendor

characteristic: cell line

text: pan-RXR

characteristic: chip antibody

text: Mus musculus

text: C17.2a neural progenitor cells, RXR ChIP


AsR-CIFA

characteristic: External Id

text: Central Institute of Freshwater Aquaculture

text: live

text: Generic

text: Argulus siamensis

text: Transcriptome profile of Argulus siamensis


text: National Human Genome Research Institute, National Institutes of Health

characteristic: INSDC center name

text: live

text: Generic

text: Common Myeloid Progenitor

characteristic: cell type

text: female

characteristic: gender

characteristic: genetic background

text: Mus musculus

text: Common Myeloid Progenitor

text: Common Myeloid Progenitor MBD2-enriched


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Erythroblast

text: female

text: Mus musculus

text: Erythroblast

text: Erythroblast MBD2-enriched


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Common Myeloid Progenitor

text: female

text: Mus musculus

text: Common Myeloid Progenitor

text: Common Myeloid Progenitor supernatant

text: supernatant

characteristic: treatment


text: live

text: Generic

text: Erythroblast

text: female

text: Mus musculus

characteristic: organism

text: Erythroblast

text: Erythroblast supernatant

characteristic: title

text: supernatant


text: live

text: Generic

text: Hematopoietic Stem Cell

text: female

text: Mus musculus

text: Hematopoietic Stem Cell

text: Hematopoietic Stem Cell MBD2-enriched


text: live

text: Generic

text: Hematopoietic Stem Cell

text: female

text: Mus musculus

text: Hematopoietic Stem Cell

text: Hematopoietic Stem Cell supernatant

text: supernatant


text: Berlin Institute for Medical Systems Biology, Max-Delbrück-Center for Molecular Medicine

text: live

text: Generic

text: Homo sapiens

text: oligo(dT) beads

characteristic: purification

text: HEK293 cell culture

text: profiling library 1

text: 4SU labeling and UV


text: live

text: Generic

text: Homo sapiens

text: oligo(dT) beads

text: HEK293 cell culture

text: profiling library 2

text: 4SU labeling and UV


Enterobacter cloacae GS1

text: Madurai Kamaraj University

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Enterobacter cloacae GS1 is a proficient colonizer of rice roots. It has been shown to improve plant growth by increasing nutrient availability to the plant.

characteristic: description

text: Enterobacter cloacae subsp. cloacae GS1

characteristic: strain

text: cloacae

characteristic: subspecies

text: Enterobacter cloacae subsp. cloacae GS1


characteristic: External Id

text: Institute of Evolutionary Biology and Environmental Studies, University of Zurich

characteristic: INSDC center name

text: live

text: Generic

text: Anti-GFP

characteristic: chip antibody

text: Abcam

characteristic: chip antibody manufacturer

text: 4 days after Dexamethasone treatment (early-intermediate floral stage ~ stage 4-5 flowers)

characteristic: developmental stage

text: Ler

text: PI-GFP AP1-GR ap1 cal

characteristic: genotype

text: Arabidopsis thaliana

text: PI-GFP (AP1-GR ap1 cal) ChIPseq replicate 1

text: flower

characteristic: tissue

text: PI-GFP (AP1-GR ap1 cal) ChIPseq


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Anti-GFP

text: Abcam

text: Ler

characteristic: genetic background

text: AP3-GFP AP1-GR ap1 cal

text: Arabidopsis thaliana

text: AP3-GFP (AP1-GR ap1 cal) ChIPseq

text: flower

text: AP3-GFP (AP1-GR ap1 cal) ChIPseq


text: live

text: Generic

characteristic: SRA accession

text: Anti-GFP

text: Abcam

text: Ler

text: AP1-GR ap1 cal

text: Arabidopsis thaliana

characteristic: organism

text: negative control (AP1-GR ap1 cal)

text: flower

text: negative control (AP1-GR ap1 cal)

characteristic: title


characteristic: External Id

text: Science for Life Laboratories

text: live

text: Generic

text: 0 hour single cells

characteristic: cell type

text: Dictyostelium discoideum

text: single-cells

characteristic: strain

text: d0h_small RNA-seq


text: Science for Life Laboratories

characteristic: INSDC center name

text: live

text: Generic

text: 16 hour developing multicellular cells

text: Dictyostelium discoideum

text: developing multicellular cells

text: d16h_small RNA-seq


text: Science for Life Laboratories

text: live

text: Generic

text: 24 hour developing multicellular cells

text: Dictyostelium discoideum

text: developing multicellular cells

text: d24h_small RNA-seq


text: Roy Parker Lab, Department of Chemistry and Biochemistry, University of Colorado at Boulder

text: live

text: Generic

text: wild type

characteristic: genotype/variation

text: Saccharomyces cerevisiae

text: wild type


text: live

text: Generic

text: dcp2D::HIS3 xrn1D::kanMX

text: Saccharomyces cerevisiae

text: dcp2D::HIS3 xrn1D::kanMX


Benning nanno

text: Michigan State University

text: live

text: Generic

text: Nannochloropsis oceanica

text: Nannochloropsis oceanica


name: 1132976704001 Leptospira interrogans serovar Grippotyphosa str. Andaman LS454009-BP3KB-A1NB-01-600 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Grippotyphosa str. Andaman

characteristic: description

text: Andaman

text: Generic sample from Leptospira interrogans serovar Grippotyphosa str. Andaman


text: Boyce Thompson Institute

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis leaf


Conus geographus sample

text: University of Utah

text: live

text: Generic

text: Used for the study of venom duct transcriptome of Conus geographus

text: Philippines: Cebu province

characteristic: geo loc name

characteristic: label

text: Conus geographus

text: General Sample for Conus geographus (taxid:6491)


text: Boyce Thompson Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: ripening fruits at 42 days post anthesis (DPA)


text: Campus IFOM-IEO, European Institute of Oncology

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Anti-H3K4me1 (Abcam # ab8895)

characteristic: antibody

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: Primary bone marrow-derived macrophages (BMDM)

text: H3K4me1_UT (1)

text: No treatment

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Anti-H3K4me1 (Abcam # ab8895)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: H3K4me1_UT (2)

text: No treatment


characteristic: External Id

text: live

text: Generic

text: Anti-H3K4me1 (Abcam # ab8895)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

characteristic: organism

characteristic: title

text: LPS (10 ng/ml) for 4hrs


characteristic: INSDC center name

text: live

text: Generic

text: Anti-H3K4me1 (Abcam # ab8895)

text: BMDM cells (7th day of differentiation)

characteristic: cell type

text: Mus musculus

characteristic: strain

text: LPS (10 ng/ml) for 24hrs


text: live

text: Generic

text: Anti-H3K4me1 (Abcam # ab8895)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: IFNg (100 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K4me1 (Abcam # ab8895)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: IL4 (10 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K4me1 (Abcam # ab8895)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: TNFa (10 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K4me1 (Abcam # ab8895)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: TGFb1 (1 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K4me1 (Abcam # ab8895)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: IL1b (10 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K4me1 (Abcam # ab8895)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: MALP2 (1 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K4me1 (Abcam # ab8895)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: CpG (100 nM) for 4hrs


text: Imperial College London

text: live

text: Generic

text: Anti-H3K27ac (Abcam # ab4729)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: No treatment


text: live

text: Generic

text: Anti-H3K27ac (Abcam # ab4729)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: H3K27ac_UT (2)

text: No treatment


text: live

text: Generic

text: Anti-H3K27ac (Abcam # ab4729)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: LPS (10 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K27ac (Abcam # ab4729)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: LPS (10 ng/ml) for 24hrs


text: live

text: Generic

text: Anti-H3K27ac (Abcam # ab4729)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: IFNg (100 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K27ac (Abcam # ab4729)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: IL4 (10 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K27ac (Abcam # ab4729)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: TNFa (10 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K27ac (Abcam # ab4729)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: TGFb1 (1 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K27ac (Abcam # ab4729)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: IL1b (10 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K27ac (Abcam # ab4729)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: MALP2 (1 ng/ml) for 4hrs


text: live

text: Generic

text: Anti-H3K27ac (Abcam # ab4729)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: CpG (100 nM) for 4hrs


text: live

text: Generic

text: Anti-H3K4me3 (Active Motif #39159)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: No treatment


text: live

text: Generic

text: Anti-H3K4me3 (Active Motif #39159)

text: BMDM cells (7th day of differentiation)

text: Mus musculus

text: H3K4me3_UT (2)

text: No treatment