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text: Gerstein, MB&B, Yale University

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characteristic: samp mat process

text: Niskin Bottle

text: 2 Litres


text: Marine Biological Laboratory

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 2005-10-17 T11:00

text: United Kingdom

characteristic: country

characteristic: description

text: marine metagenome

text: aerobic

text: Aerobic

text: Niskin Bottle

text: 2 Litres

characteristic: silicate

characteristic: temp


text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: ammonium

text: 2005-11-15 T11:00

text: United Kingdom

characteristic: nitrate

text: marine metagenome

characteristic: organism

text: aerobic

text: Aerobic

text: Niskin Bottle

text: 2 Litres


characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC last update

text: live

text: Generic

characteristic: chlorophyll

text: 2005-12-05 T11:00

characteristic: collection date

text: United Kingdom

characteristic: lat_lon (N:W)

text: marine metagenome

text: aerobic

characteristic: phosphate

text: Aerobic

text: Niskin Bottle

text: 2 Litres

characteristic: title


text: Marine Biological Laboratory

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 2006-01-03 T11:00

text: United Kingdom

characteristic: country

characteristic: description

text: marine metagenome

text: aerobic

text: Aerobic

characteristic: salinity

characteristic: samp mat process

text: Niskin Bottle

text: 2 Litres


text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: ammonium

text: 2006-03-06 T11:00

text: United Kingdom

text: marine metagenome

text: aerobic

text: Aerobic

text: Niskin Bottle

text: 2 Litres

characteristic: silicate

characteristic: temp


characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC last update

text: live

text: Generic

characteristic: chlorophyll

text: 2006-03-20 T11:00

characteristic: collection date

text: United Kingdom

characteristic: lat_lon (N:W)

characteristic: nitrate

text: marine metagenome

characteristic: organism

text: aerobic

text: Aerobic

text: Niskin Bottle

text: 2 Litres


text: Marine Biological Laboratory

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 2006-04-11 T11:00

text: United Kingdom

characteristic: country

characteristic: description

text: marine metagenome

text: aerobic

characteristic: phosphate

text: Aerobic

text: Niskin Bottle

text: 2 Litres

characteristic: title


text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: ammonium

text: 2006-05-04 T11:00

text: United Kingdom

text: marine metagenome

text: aerobic

text: Aerobic

characteristic: salinity

characteristic: samp mat process

text: Niskin Bottle

text: 2 Litres


characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC last update

text: live

text: Generic

characteristic: chlorophyll

text: 2006-06-06 T11:00

characteristic: collection date

text: United Kingdom

characteristic: lat_lon (N:W)

text: marine metagenome

text: aerobic

text: Aerobic

text: Niskin Bottle

text: 2 Litres

characteristic: silicate

characteristic: temp


text: Marine Biological Laboratory

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 2006-06-27 T11:00

text: United Kingdom

characteristic: country

characteristic: description

characteristic: nitrate

text: marine metagenome

characteristic: organism

text: aerobic

text: Aerobic

text: Niskin Bottle

text: 2 Litres


text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: ammonium

text: 2006-07-17 T11:00

text: United Kingdom

text: marine metagenome

text: aerobic

characteristic: phosphate

text: Aerobic

text: Niskin Bottle

text: 2 Litres

characteristic: title


characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC last update

text: live

text: Generic

characteristic: chlorophyll

text: 2006-08-22 T11:00

characteristic: collection date

text: United Kingdom

characteristic: lat_lon (N:W)

text: marine metagenome

text: aerobic

text: Aerobic

characteristic: salinity

characteristic: samp mat process

text: Niskin Bottle

text: 2 Litres


text: Marine Biological Laboratory

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 2006-09-12 T11:00

text: United Kingdom

characteristic: country

characteristic: description

text: marine metagenome

text: aerobic

text: Aerobic

text: Niskin Bottle

text: 2 Litres

characteristic: silicate

characteristic: temp


text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: ammonium

text: 2006-10-30 T11:00

text: United Kingdom

characteristic: nitrate

text: marine metagenome

characteristic: organism

text: aerobic

text: Aerobic

text: Niskin Bottle

text: 2 Litres


characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC last update

text: live

text: Generic

characteristic: chlorophyll

text: 2006-12-12 T11:00

characteristic: collection date

text: United Kingdom

characteristic: lat_lon (N:W)

text: marine metagenome

text: aerobic

characteristic: phosphate

text: Aerobic

text: Niskin Bottle

text: 2 Litres

characteristic: title


text: Gerstein, MB&B, Yale University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: biomaterial provider

text: Suspension Morphology

characteristic: growth properties

text: Myc

characteristic: lymphoblast antibody

text: Homo sapiens


text: Gerstein, MB&B, Yale University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Suspension Morphology

text: RNA Pol III

text: Homo sapiens


characteristic: External Id

text: Gerstein, MB&B, Yale University

text: live

text: Generic

text: Coriell: GM12878 http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878

text: Suspension Morphology

text: RNA Pol III

text: IP

characteristic: lymphoblast cellular condition

text: Homo sapiens

characteristic: organism


text: Gerstein, MB&B, Yale University

characteristic: INSDC last update

text: live

text: Generic

text: Suspension Morphology

text: normal

text: Homo sapiens


text: Gerstein, MB&B, Yale University

text: live

text: Generic

text: Suspension Morphology

text: RNA Pol II

text: Homo sapiens


idas

text: University of Wyoming - Buerkle

text: live

text: Generic

text: Plebejus argyrognomon

text: Generic sample from Lycaeides argyrognomon


warner

text: University of Wyoming - Buerkle

text: live

text: Generic

text: Plebejus sp. 'Warner Mts.'

text: Generic sample from Lycaeides sp. 'Warner Mts.'


alpine

text: University of Wyoming - Buerkle

text: live

text: Generic

text: Plebejus sp. alpine

text: Generic sample from Lycaeides sp. alpine


Tumor

text: The Walter and Eliza Hall Institute of Medical Research

text: live

text: Generic

text: Sarcophilus harrisii

text: Generic sample from Sarcophilus harrisii


Testis

text: live

text: Generic

text: Sarcophilus harrisii

text: testis

characteristic: tissue type

text: Tasmanian devil testis


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: cotyledon

text: Tropaeolum majus cotyledon 18 DPA

characteristic: description

text: 18 DPA

text: standard

characteristic: library description

text: Tropaeolum majus

text: Generic sample from Tropaeolum majus


characteristic: INSDC secondary accession

text: live

text: Generic

text: cotyledon

text: Tropaeolum majus cotyledon 25 DPA

text: 25 DPA

text: standard

text: Tropaeolum majus

text: Generic sample from Tropaeolum majus

characteristic: title


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: cotyledon

text: Tropaeolum majus cotyledon 18 DPA normalized

text: 18 DPA

text: normalized

text: Tropaeolum majus

text: Generic sample from Tropaeolum majus


text: live

text: Generic

text: cotyledon

text: Tropaeolum majus cothyledon 21 DPA normalized

text: 21 DPA

text: normalized

text: Tropaeolum majus

text: Generic sample from Tropaeolum majus


text: Research Technology Support Facility at Michigan State University

text: live

text: Generic

text: 454 pyrosequencing transcriptional profile of exponential fruit growth in cucumber 8 days post pollination

text: Cucumis sativus

text: Generic sample from Cucumis sativus


RO 01508

text: Gene Expression Omnibus

text: live

text: Generic

text: FHCRC HEIMFELD

characteristic: biomaterial provider

text: Primary Cell

characteristic: biomaterial type

text: CD34 Primary Cells

characteristic: cell type

text: flow sorted CD34+ cells from cord blood

characteristic: donor age

text: Hispanic

characteristic: donor ethnicity

text: RO 01508

characteristic: donor id

text: male

characteristic: donor sex

characteristic: markers

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


RO 01527

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: FHCRC HEIMFELD

text: Primary Cell

text: CD34 Primary Cells

text: flow sorted CD34+ cells from cord blood

text: RO 01527

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


RO 01535

text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: FHCRC HEIMFELD

text: Primary Cell

text: CD34 Primary Cells

text: flow sorted CD34+ cells from cord blood

characteristic: description

text: RO 01535

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

text: University of Washington, Congenital Defects Lab. Ian Glass

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: fetal

characteristic: collection method

text: Fetal Kidney primary tissue, day 82

text: 82 days

characteristic: donor age

text: Caucasian

characteristic: donor ethnicity

text: female

text: genomic DNA

text: Homo sapiens

text: UW

characteristic: tissue depot

text: fetal kidney

characteristic: tissue type

text: Generic sample from Homo sapiens


D.mel. mixed embryo

characteristic: External Id

text: Berkeley Drosophila Genome Project

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


Maxxa

text: Brigham Young University

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: PI 540885 in the GRIN Plant database. Genomic resources have been developed for this accession, including BAC libraries, microarrays, ESTs, etc.

text: Gossypium hirsutum

text: Generic sample from Gossypium hirsutum


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Thea Tlsty

text: Primary Tissue

text: Breast, Luminal Epithelial Cells, Individual 1

text: female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: organism

text: Luminal epithelial cell

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

text: Thea Tlsty Lab UCSF

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Breast, Luminal Epithelial Cells, Individual 2

characteristic: description

text: female

text: genomic DNA

text: Homo sapiens

text: Luminal epithelial cell

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

text: Thea Tlsty Lab UCSF

text: Primary Tissue

text: Breast, Myoepithelial Cells, Individual 2

text: genomic DNA

text: Homo sapiens

text: myo epithelial cell

characteristic: tissue type

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Thea Tlsty Lab UCSF

text: Primary Tissue

text: Breast, Stem Cells, Individual 2

text: female

text: genomic DNA

text: Homo sapiens

text: stem cell

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: Thea Hlsty Lab UCSF

text: Primary Tissue

text: female

text: genomic DNA

text: Homo sapiens

text: Luminal epithelial cell

text: Generic sample from Homo sapiens


text: Brigham Young University

characteristic: INSDC first public

text: live

text: Generic

text: An accession of wild cotton collected from the Yucatan peninsula. This accession was found to be very distinct from any other of sample accessions in recent studies of nucleotide diversity.

text: Gossypium hirsutum

text: Generic sample from Gossypium hirsutum


text: Brigham Young University

characteristic: INSDC last update

text: live

text: Generic

text: A domesticated cultivar of Gossypium barbadense. G. barbadense is also known as Egyptian cotton, Sea Island cotton, or Pima cotton.

text: Gossypium barbadense

text: Generic sample from Gossypium barbadense


text: Brigham Young University

text: live

text: Generic

characteristic: NCBI submission package

text: An accession of 'wild' G. barbadense cotton. This accession was thought to be distinct from domesticated accessions of G. barbadense, but it may not be a true wild-type.

text: Gossypium barbadense


text: Brigham Young University

text: live

text: Generic

characteristic: SRA accession

text: D5 designation assigned to Gossypium raimondii. It is one of ~40 species of D-genome Gossypium species found in Central America. D5 - or Gossypium raimondii - is the D-diploid species that is most closely related to the D-genome in allotetraploid cotton (AD). GN33 is a plant that has grown many years in the Pohl Conservatory on top of Bessey Hall at Iowa State University in the care of Dr. Jonathan Wendel.

text: Gossypium raimondii

text: Generic sample from Gossypium raimondii


text: Brigham Young University

characteristic: INSDC secondary accession

text: live

text: Generic

text: A2 designation assigned to Gossypium arboreum. It is one of 2 species of 2-genome Gossypium species found in East Africa and Central Asia. The DNA sequence of the A2 coding regions are closely related to the A-genome in allotetraploid cotton (AD). A2 is a plant that was grown in the Pohl Conservatory on top of Bessey Hall at Iowa State University in the care of Dr. Jonathan Wendel.

text: Gossypium arboreum

text: Generic sample from Gossypium arboreum


text: Duke University

text: live

characteristic: INSDC status

text: Generic

text: total genomic DNA from adult females from Mount St. Helena 1993 strain of D. persimilis

text: Drosophila persimilis

text: Generic sample from Drosophila persimilis


Sordaria macrospora mycelium

text: Ruhr-University Bochum

text: live

text: Generic

text: vegetative mycelium of the filamentous ascomycete Sordaria macrospora

text: Sordaria macrospora

text: Generic sample from Sordaria macrospora


Pcnormalized

text: IGB Berlin

text: live

text: Generic

text: Paulinella

text: Generic sample from Paulinella


stress citro

text: MR DNA

text: live

text: Generic

text: The gastrointestinal tract is colonized by an enormous array of microbes that are known to have many beneficial effects on the host. Previous studies have indicated that stressor exposure can disrupt the stability of the intestinal microbiota, but the extent of these changes, as well as the affects on enteric infection, have not been well characterized. In order to examine the ability of stressors to induce changes in the gut microbiota, we exposed mice to a prolonged restraint stressor and then characterized microbial populations in the intestines using both traditional culture techniques and bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). Exposure to the stressor led to an overgrowth of facultatively anaerobic microbiota, while at the same time significantly reducing microbial richness and diversity in the cecums of stressed mice. Some of these effects could be explained by a stressor-induced reduction in the relative abundance of bacteria in the family Porphyromonadaceae. To determine whether these alterations would lead to increased pathogen colonization, stressed mice, as well as non-stressed controls, were challenged per orally with the enteric murine pathogen, Citrobacter rodentium. Exposure to the restraint stressor led to a significant increase in C. rodentium colonization compared to non-stressed control mice. The increased colonization was associated with increased TNF-α gene expression in colonic tissue. Together, these data demonstrate that a prolonged stressor can significantly change the composition of the intestinal microbiota, and suggests that this disruption of the microbiota increases susceptibility to an enteric pathogen.

text: gut metagenome

text: Generic sample from Bacteria


Onchocerca flexuosa 2007

text: Washington University School of Medicine

text: live

text: Generic

text: Adult O. flexuosa worms were collected from red deer (Cervus elaphus) in northern Germany (Schleswig-Holstein) during community hunts in late fall. Freshly shot deer were screened for subcutaneous O. flexuosa nodules. O. flexuosa and O. jakutensis (a Wolbachia positive species) nodules were differentiated by morphology [12]. Most deer were not infected with O. jakutensis. Mixed species nodules were not observed.

text: Onchocerca flexuosa

text: Generic sample from Onchocerca flexuosa


text: Cancer Biology, City of Hope

text: live

text: Generic

characteristic: antibody

text: wildtype

characteristic: genotype/variation

text: Mus musculus

text: murine CD4+ T

text: pre IL21

characteristic: stimulation

text: IRF4 bound pre IL21, seq 1


text: Cancer Biology, City of Hope

text: live

text: Generic

characteristic: NCBI submission model

text: wildtype

text: Mus musculus

characteristic: organism

text: murine CD4+ T

text: pre IL21

text: IRF4 bound pre IL21, seq 2


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: pre IL21

text: IRF4 bound pre IL21 dup, seq 1


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: pre IL21

text: IRF4 bound pre IL21 dup, seq 2


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: IRF4 bound post IL21, seq 1


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: IRF4 bound post IL21, seq 2


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: IRF4 bound post IL21 dup, seq 1


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: IRF4 bound post IL21 dup, seq 2


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: pre IL21

text: STAT3 bound pre IL21, seq 1


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: pre IL21

text: STAT3 bound pre IL21, seq 2


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: pre IL21

text: STAT3 bound pre IL21 dup, seq 1


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: pre IL21

text: STAT3 bound pre IL21 dup, seq 2


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: pre IL21

text: STAT3 bound pre IL21 in WT, ter


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: pre IL21

text: STAT3 bound pre IL21 in WT, 4th experiment


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: STAT3 bound post IL21, seq 1


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: STAT3 bound post IL21, seq 2


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: STAT3 bound post IL21 dup, seq 1


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: STAT3 bound post IL21 dup, seq 2


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: STAT3 bound post IL21 in WT, ter


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: STAT3 bound post IL21 in WT, quar


text: Cancer Biology, City of Hope

text: live

text: Generic

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: STAT3 bound post IL21 in WT, cinq


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IgG

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL6

text: IgG bound post IL6


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IgG

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL2

text: IgG bound post IL2 dup


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IgG

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: IgG bound post IL21 dup


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IgG

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: IgG bound post IL21, ter


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IgG

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL21

text: IgG bound post IL21 in WT, quar


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IgG

text: wildtype

text: Mus musculus

text: B cells

text: post IL21

text: IgG bound post IL21 in B cells


text: Cancer Biology, City of Hope

text: live

text: Generic

text: GIgG

text: wildtype

text: Mus musculus

text: murine CD4+ T

text: post IL6

text: GIgG bound post IL6


text: Cancer Biology, City of Hope

text: live

text: Generic

text: GIgG

text: wildtype

text: Mus musculus

text: B cells

text: post IL21

text: GIgG bound post IL21 in B cells


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IRF4 KO

text: Mus musculus

text: murine Irf4 deficient CD4+ T

text: pre IL21

text: IRF4 bound pre IL21 in IRF4 KO mice


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IRF4 KO

text: Mus musculus

text: murine Irf4 deficient CD4+ T

text: post IL21

text: IRF4 bound post IL21 in IRF4 KO mice


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IRF4 KO

text: Mus musculus

text: murine Irf4 deficient CD4+ T

text: pre IL21

text: STAT3 bound pre IL21 in IRF4 KO mice, first exp


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IRF4 KO

text: Mus musculus

text: murine Irf4 deficient CD4+ T

text: pre IL21

text: STAT3 bound pre IL21 in IRF4 KO mice, second exp


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IRF4 KO

text: Mus musculus

text: murine Irf4 deficient CD4+ T

text: post IL21

text: STAT3 bound post IL21 in IRF4 KO mice


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IRF4 KO

text: Mus musculus

text: murine Irf4 deficient CD4+ T

text: post IL21

text: STAT3 bound post IL21 in IRF4 KO mice, second exp


text: Cancer Biology, City of Hope

text: live

text: Generic

text: IRF4 KO

text: Mus musculus

text: murine Irf4 deficient CD4+ T

text: post IL21

text: STAT3 bound post IL21 in IRF4 KO mice, third exp


lsy-12 ot17

text: Columbia University

text: live

text: Generic

text: C Elegans mutant strain with two ASER chemosensory neurons lsy-12 (ot177). Caenorhabditis elegans mutant allele identification by whole-genome sequencing. Identification of the molecular lesion in Caenorhabditis elegans mutants isolated through forward genetic screens usually involves time-consuming genetic mapping. We used Illumina deep sequencing technology to sequence a complete, mutant C. elegans genome and thus pinpointed a single-nucleotide mutation in the genome that affects a neuronal cell fate decision. This constitutes a proof-of-principle for using whole-genome sequencing to analyze C. elegans mutants.

text: Caenorhabditis elegans

text: Caenorhabditis elegans mutant strain with two ASER chemosensory neurons


Naive B Cell (Naive39)

text: Gene Expression Omnibus

text: live

text: Generic

text: Naive B Cell

characteristic: b cell type

text: source: Lymphoid organ; description: miRNA profiling

text: Homo sapiens

text: training

characteristic: set

text: Generic sample from Homo sapiens


Germinal Center B cell (GC136)

text: Gene Expression Omnibus

text: live

text: Generic

text: Germinal Center B cell

characteristic: description

text: Homo sapiens

text: training

text: Generic sample from Homo sapiens

characteristic: title


Plasma B cells (PC137)

characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: Plasma B cell

text: Homo sapiens

text: training

text: Generic sample from Homo sapiens


Memory B cells (MM55)

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: Memory B cell

text: Homo sapiens

text: training

text: Generic sample from Homo sapiens


Naive B Cell (Naive138)

text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: Naive B Cell

text: Homo sapiens

text: validation

text: Generic sample from Homo sapiens


Germinal Center B cell (GC40)

text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: Germinal Center B cell

text: Homo sapiens

text: validation

text: Generic sample from Homo sapiens


Plasma B cells (PC44)

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

text: Plasma B cell

text: Homo sapiens

text: validation

text: Generic sample from Homo sapiens


Memory B cells (MM139)

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: SRA accession

text: Memory B cell

text: Homo sapiens

text: validation

text: Generic sample from Homo sapiens


Biogas

text: Bielefeld University

characteristic: INSDC secondary accession

text: live

text: Generic

text: A fermentation sample from a production-scale biogas plant fed with maize silage, green rye and liquid manure.

text: metagenomes

text: Generic sample from metagenomes


text: Max-Planck-Institut for molecular Genetics

text: live

characteristic: INSDC status

text: Generic

text: Micrococcal nuclease (MNase) is frequently used to determine nucleosome positions both in vitro and in vivo. This is achieved by digesting chromatin by MNase and selecting nucleosomal sized DNA fragments (~150 base pairs). To check to what extend the resulting data is biased by the use MNase and the size selection, a control experiment was performed, where naked yeast DNA was digested with MNase and fragments of 150 base pairs were selected. The MNase data shows a good correspondence to the data obtained by digesting chromatin assembled in vitro as well as chromatin isolated in vivo.

text: Saccharomyces cerevisiae

text: The effect of MNase on nucleosome positioning data


name: Rithun's env-antisense associated HIV-1 sequences

text: University Of Pennsylvania

text: live

text: Generic

text: HIV sequences were obtained from mouse plasma by 454/Roche pyrosequencing. These were processed through multiple steps as discussed in the paper [Mukherjee, Plesa, et al. (2010) Molecular Therapy]. Computational analyses revealed that HIV sequence variation is modified in the presence of env antisense.

text: Human immunodeficiency virus 1

text: Generic sample from Human immunodeficiency virus 1


text: Illumina Cambridge Ltd.

text: live

text: Generic

text: PG0000001 is the human genomic DNA derived from peripheral blood lymphocytes of Jay Flatley.

text: Homo sapiens

characteristic: sample id

text: male

characteristic: sex

text: Jay Flatley

characteristic: subject id

text: Illumina Personal Genome PG0000001


text: DOE-CSP 2008

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Prodigal

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

characteristic: Greengenes ID

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: isolated by C B van Niel -- H C Douglas in 1949

characteristic: Isolation Comments

text: Generic

characteristic: NCBI submission model

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Keywords: GSC:MIGS:2.1

characteristic: investigation type

text: Rhodomicrobium vannielii ATCC 17100

text: Rhodomicrobium vannielii ATCC 17100

characteristic: project name

text: ATCC 17100, NCIMB 10020

text: ATCC 17100

characteristic: strain

text: Mesophile

characteristic: temperature range

text: Rhodomicrobium vannielii ATCC 17100, complete genome.

text: photoheterotroph

text: type strain of Rhodomicrobium vannielii

characteristic: type material


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Aciduliprofundum boonei T469

characteristic: description

text: Aciduliprofundum boonei T469

characteristic: organism

text: Generic sample from Aciduliprofundum boonei T469

characteristic: title


text: DOE-GLBRC 2008

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Prodigal

characteristic: Gene Calling Method

text: Gram+

characteristic: Gram Staining

text: live

text: Generic

characteristic: NCBI submission model

text: Sporulating

characteristic: Sporulation

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Keywords: GSC:MIGS:2.1

text: Soil

characteristic: environment

text: Soil

characteristic: isolation site

text: soil

characteristic: isolation-source

text: Motile

characteristic: motility

text: Evansella cellulosilytica DSM 2522

text: Alkaliphile

characteristic: phenotypes

text: Bacillus cellulosilyticus N-4, DSM 2522

text: DSM 2522, ATCC 21833, FERM P-1141, JCM 9156

text: facultative

text: DSM 2522

characteristic: temperature optimum

text: Mesophile

text: Bacillus cellulosilyticus DSM 2522, complete genome.

text: type strain of Bacillus cellulosilyticus


characteristic: External Id

text: Max Delbrueck Center for Molecular Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Pristionchus pacificus

characteristic: organism

text: Generic sample from Pristionchus pacificus


text: CNRS

text: live

text: Generic

characteristic: NCBI submission model

text: cDNAs were synthesized using a Clontech SMART protocol optimized for 454 GS FLX sequencing from the polyadenylated RNA fraction of Acanthamoeba castellanii cells at T = 0, 3h, 6h and 9h following their infection by Mimivirus.

characteristic: description

text: Acanthamoeba polyphaga mimivirus

text: Generic sample from Acanthamoeba polyphaga mimivirus

characteristic: title


text: CNRS

text: live

text: Generic

text: cDNAs were synthesized using a Clontech SMART protocol optimized for 454 GS FLX sequencing from the polyadenylated RNA fraction of Acanthamoeba castellanii cells at T = -15mn, 1h30, 6h and 9h following their infection by Mimivirus.

text: Acanthamoeba polyphaga mimivirus


text: Eric Lai, Developmental Biology, Memorial Sloan Kettering Cancer Center

text: live

text: Generic

text: anti-Miwi

characteristic: antibody

text: Mus musculus

text: ~18-30 nt

characteristic: size selection

text: Miwi immuprecipitate

text: adult

characteristic: stage

text: Miwi-IP


text: live

text: Generic

text: anti-Mili

text: Mus musculus

text: ~18-30 nt

text: Mili immuprecipitate

text: adult

text: Mili-IP


text: live

text: Generic

text: Mus musculus

text: ~18-30 nt

text: total RNA

text: adult

text: total RNA


text: live

text: Generic

text: Xenopus tropicalis

text: Y12-associated small RNA

text: egg

characteristic: tissue

text: Xenopus-egg_Y12-associated small RNAs


text: DOE-CSP 2008

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Gram-

characteristic: Gram Staining

characteristic: Greengenes ID

text: live

text: Generic

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Keywords: GSC:MIGS:2.1

text: Fresh water

characteristic: environment

characteristic: investigation type

text: fresh water

characteristic: isolation-source

text: Brevundimonas subvibrioides ATCC 15264

text: Brevundimonas subvibrioides ATCC 15264

characteristic: project name

text: ATCC 15264, DSM 4735, LMG 14903

text: aerobe

text: ATCC 15264

characteristic: strain

text: Mesophile

characteristic: temperature range

text: Brevundimonas subvibrioides ATCC 15264, complete genome.

text: type strain of Brevundimonas subvibrioides

characteristic: type material


characteristic: External Id

text: Washington University Center for Genome Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Fecal microbiome of monozygotic twin (co-twin of TS29)

characteristic: description

text: feces; sample TS28

text: Homo sapiens

characteristic: nat-host

text: human gut metagenome

characteristic: organism

text: Generic sample from uncultured bacterium

characteristic: title


text: live

text: Generic

text: Fecal microbiome of monozygotic twin (co-twin of TS28)

text: feces; sample TS29

characteristic: isolation-source

text: Homo sapiens

text: human gut metagenome


name: Pleurobrachia bachei 5KB paired end library

text: University of Florida - Leonid Moroz

text: live

text: Generic

text: Sequencing of the Pleurobrachia bachei genome using 454 Titanium fragment and paired end libraries coverage at 20X the genome size. 20 pool animals was use to make the 5kb library.

text: Pleurobrachia bachei

text: Generic sample from Pleurobrachia bachei


Bacteroides Genomes #1b Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler v. 1.1.03.24-64-7

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Partial genome sequencing of Australian HMP10 using 454 technology

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft17x;236

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Bacteroides xylanisolvens SD CC 1b

text: Bacteroides xylanisolvens SD CC 1b

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: not determined

text: Homo sapiens

characteristic: specific host

text: SD CC 1b

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bacteroides xylanisolvens SD CC 1b


Bacteroides vulgatus Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 1.1.03.24-64-7

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Partial genome sequencing of Australian HMP07 using 454 technology

characteristic: description

text: Level 2: High-Quality Draft61x;117

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Intestinal tract

text: not determined

text: not determined

text: Phocaeicola vulgatus PC510

characteristic: organism

text: Bacteroides vulgatus PC510

text: Reference Genome

text: not determined

text: not determined

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Bacteroides vulgatus PC510

characteristic: title


Turicibacter Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler Assembler v. 2.3

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Partial genome sequencing of Australian HMP08 using 454 technology

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft70.6x;125

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Turicibacter sanguinis PC909

text: Turicibacter sanguinis PC909

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: not determined

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Turicibacter sanguinis PC909


Bacteroides Genomes #2a Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 1.1.03.24-64-7

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Partial genome sequencing of Australian HMP11 using 454 technology

characteristic: description

text: Level 2: High-Quality Draft14.1x;305

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Bacteroides xylanisolvens SD CC 2a

text: Bacteroides ovatus SD CC 2a

text: Reference Genome

text: not determined

text: not determined

text: Homo sapiens

characteristic: specific host

text: SD CC 2a

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bacteroides ovatus SD CC 2a


Mock community

text: live

text: Generic

text: Barcoded sequences from a pool of cultured isolates: Even1 (TAGTTGCGAGTC), Even2 (TCACGATTAGCG), Even3 (TCATCGCGATAT), Uneven1 (TCGAGCGAATCT), Uneven2 (TCGTTCACATGA), and Uneven3 (TCTGCTAGATGT).

text: Bacteria

characteristic: organism

text: Generic sample from Bacteria

characteristic: title


Pseudosciaena crocea

text: Beijing Institute of Genomics Chinese Acad of Sci - Key Lab

text: live

text: Generic

text: Larimichthys crocea

text: Generic sample from Larimichthys crocea


text: Genome Technology & Biology, Genome Institute of Singapore

text: live

text: Generic

text: Embryonic stem cells

characteristic: cell type

text: Homo sapiens

text: Embryonic stem cells

text: Embryonic stem cells: Bisulfite sequencing


characteristic: External Id

text: live

text: Generic

text: Homo sapiens

text: Fibroblast

text: Fibroblasts derived from human embryonic stem cells: Bisulfite sequencing


characteristic: INSDC center name

text: live

text: Generic

text: Newborn Human Foreskin Fibroblasts

text: Homo sapiens

text: Primary fibroblast

text: Newborn Human Foreskin Fibroblasts: Bisulfite sequencing


name: Bacteriophage DNA-derived barcodes Replicate 1

text: University of Washington Genome Sciences - Shendure Lab

characteristic: INSDC first public

text: live

text: Generic

text: A complex library of SP6, T7 and T3 promoter variants, each with a unique downstream barcode was synthesized in parallel using an Agilent programmable microarray platform. The library was subjected to in vitro transcription (IVT). The DNA templates from the IVT reaction were PCR-amplified using hybrid solexa primers flanking the barcodes, resulting in a sequencing-ready library.

text: synthetic construct

text: Generic sample from synthetic construct


name: Bacteriophage DNA-derived barcodes Replicate 2

characteristic: INSDC last update

text: live

text: Generic

text: synthetic construct

text: Generic sample from synthetic construct


name: Bacteriophage RNA-derived barcodes Replicate 1

characteristic: INSDC secondary accession

text: live

text: Generic

text: A complex library of synthetic promoter variants, each with a unique downstream barcode was subjected to in vitro transcription. The transcripts were reverse-transcribed and PCR-amplified using hybrid solexa primers resulting in a sequencing-ready library.

text: synthetic construct

text: Generic sample from synthetic construct


name: Bacteriophage RNA-derived barcodes Replicate 2

text: live

characteristic: INSDC status

text: Generic

text: synthetic construct

text: Generic sample from synthetic construct


name: Mammalian DNA-derived barcodes Replicate 1

text: live

text: Generic

characteristic: NCBI submission model

text: A complex library of CMV, HBB and S100A4 promoter variants, each with a unique downstream barcode was synthesized in parallel using an Agilent programmable microarray platform. The library was subjected to in vitro transcription (IVT). The DNA templates from the IVT reaction were PCR-amplified using hybrid solexa primers flanking the barcodes, resulting in a sequencing-ready library.

text: synthetic construct

text: Generic sample from synthetic construct


name: Mammalian DNA-derived barcodes Replicate 2

text: live

text: Generic

characteristic: NCBI submission package

text: synthetic construct

text: Generic sample from synthetic construct


name: Mammalian RNA-derived barcodes Replicate 1

text: live

text: Generic

characteristic: SRA accession

text: synthetic construct

text: Generic sample from synthetic construct


name: Mammalian RNA-derived barcodes Replicate 2

text: live

text: Generic

text: synthetic construct

text: Generic sample from synthetic construct


text: University of Illinois

text: live

text: Generic

text: Genomic survey reads from Miscanthus x giganteus

text: Miscanthus x giganteus

text: Generic sample from Miscanthus x giganteus


text: E. De Paoli, Agricultural, Food, Environmental and Animal Sciences, University of Udine

text: live

text: Generic

text: 6-weeks-old seedlings

characteristic: age at harvest

text: Lyudmila Sidorenko and Vicki Chandler (University of Arizona)

characteristic: biomaterial provider

text: B73 (wild type)

characteristic: cultivar

text: Zea mays

text: Leaves

text: Small RNAs from maize leaves


text: live

text: Generic

text: 10- and 11-week old plants

text: B73 (wild type)

text: post-meiotic stage

characteristic: developmental stage

text: 3-5 cm long with silks about 1-4 cm long

characteristic: length

text: Zea mays

text: Female inflorescence (ears)

text: Small RNAs from maize ears


text: live

text: Generic

text: 8-week old plants

text: B73 (wild type)

text: pre-meiotic stage

text: ranged in length between 2-4 cm long

text: Zea mays

characteristic: organism

text: Male inflorescence (tassels)

text: Small RNAs from maize tassels


text: MGH

text: live

text: Generic

text: embryonic stem cells

characteristic: chip antibody

text: Mus musculus

characteristic: passages

text: Embryonic Stem cells

text: 129SvJae x C57BL/6

characteristic: strain

characteristic: title


characteristic: External Id

text: State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Wild-type

characteristic: genotype

text: Oryza sativa Indica Group

text: young inflorescences (4~6cm)

text: young inflorescences (4~6cm)

characteristic: tissue

text: Oryza sativa L. ssp. indica Degradome


text: Massachusetts Institute of Technology

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: animal

text: Sarcophilus harrisii

text: Facial tumor

text: Facial tumor


text: Massachusetts Institute of Technology

text: live

text: Generic

characteristic: SRA accession

text: Sarcophilus harrisii

text: Kidney

text: Kidney

text: Kidney


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Sarcophilus harrisii

characteristic: organism

text: Brain

text: Brain

text: Brain


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Sarcophilus harrisii

text: Heart

text: Heart

text: Heart


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Sarcophilus harrisii

text: Liver

text: Liver

text: Liver


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Sarcophilus harrisii

text: Bone marrow

text: Bone marrow

text: Bone marrow


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Sarcophilus harrisii

text: Pancreas

text: Pancreas

text: Pancreas


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Sarcophilus harrisii

text: Skin

text: Skin

text: Skin


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Sarcophilus harrisii

text: Spleen

text: Spleen

text: Spleen


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Sarcophilus harrisii

text: Facial tumor (mammary metastasis)

text: Facial tumor (mammary metastasis)


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Sarcophilus harrisii

text: Testis

text: Testis

text: Testis


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Sarcophilus harrisii

text: Lymph node

text: Lymph node

text: Lymph node


text: EMBL Grenoble Outstation

text: live

text: Generic

text: 14 dpp

characteristic: dev stage

text: Mus musculus

text: Mili IP_Tdrd9+/-

text: testes

text: Mili IP_Tdrd9+/- replicate1


text: EMBL Grenoble Outstation

text: live

text: Generic

text: 14 dpp

text: Mus musculus

text: Mili IP_Tdrd9+/-

text: testes

text: Mili IP_Tdrd9+/- replicate2


text: EMBL Grenoble Outstation

text: live

text: Generic

text: 14 dpp

text: Mus musculus

text: Mili IP_Tdrd9-/-

text: testes

text: Mili IP_Tdrd9-/- replicate1


text: EMBL Grenoble Outstation

text: live

text: Generic

text: 14 dpp

text: Mus musculus

text: Mili IP_Tdrd9-/-

text: testes

text: Mili IP_Tdrd9-/- replicate2


Hela

text: CNRS

text: live

text: Generic

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Acidaminococcus fermentans DSM 20731

characteristic: description

text: Acidaminococcus fermentans DSM 20731

text: DSM 20731

text: Generic sample from Acidaminococcus fermentans DSM 20731


Neurospora crassa OR74A

text: Oregon State University

text: live

text: Generic

text: Neurospora crassa OR74A

text: Generic sample from Neurospora crassa OR74A


Mastodon

text: Harvard Medical School

text: live

text: Generic

text: tooth root of a mastodon molar from Ikpikpuk River, Alaska, USA; United States Bureau of Land Management-Alaska collection IK-99-237; very same extract as in Rohland et al. 2007

text: Mammut americanum

text: Generic sample from Mammut americanum


text: Indiana University

text: live

text: Generic

text: ETS1 sc355 from Santa Cruz Biotechnology

characteristic: antibody

text: Jurkat, clone E6-1 T lymphocyte

characteristic: cell type

text: Homo sapiens

text: ETS1 ChIP


characteristic: External Id

text: Indiana University

text: live

text: Generic

text: RUNX monoclonal from Nancy Speck

text: Jurkat, clone E6-1 T lymphocyte

text: Homo sapiens

text: RUNX ChIP

characteristic: title


text: Indiana University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: CBP A-22 from Santa Cruz Biotechnology

text: Jurkat, clone E6-1 T lymphocyte

text: Homo sapiens

text: CBP ChIP


text: Indiana University

text: live

text: Generic

text: Jurkat, clone E6-1 T lymphocyte

text: Homo sapiens

text: Input DNA


text: Sidow Lab, Pathology, Stanford University

text: live

text: Generic

characteristic: cell line

characteristic: chip antibody

text: Mus musculus

text: Embryonic stem cells (chromatin IP fraction)


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mus musculus

text: Embryonic stem cells (total chromatin)


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: late embryonic stage

characteristic: developmental stage

text: Drosophila melanogaster

text: male

characteristic: sex

text: cnv_S2-DRSC_1 extraction1_seq1 channel_1

text: embryo-derived cell-line

characteristic: tissue

text: cnv_S2-DRSC_1 extraction1_seq1


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: late embryonic stage

text: Drosophila melanogaster

characteristic: organism

text: male

text: cnv_S2-DRSC_2 extraction2_seq1 channel_1

text: embryo-derived cell-line

text: cnv_S2-DRSC_2 extraction2_seq1


text: live

text: Generic

text: late embryonic stage

text: se/e

characteristic: genotype

text: Drosophila melanogaster

text: female

text: cnv_Kc167_1 extraction1_seq1 channel_1

text: embryo-derived cell-line

text: cnv_Kc167_1 extraction1_seq1


characteristic: External Id

text: live

text: Generic

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: cnv_Kc167_2 extraction2_seq1 channel_1

text: embryo-derived cell-line

text: cnv_Kc167_2 extraction2_seq1


text: live

text: Generic

text: third instar larval stage

text: y v f mal

text: Drosophila melanogaster

text: cnv_ML-DmBG3_1 extraction1_seq1 channel_1

text: CNS-derived cell-line

text: cnv_ML-DmBG3_1 extraction1_seq1

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: third instar larval stage

text: y v f mal

text: Drosophila melanogaster

text: cnv_ML-DmBG3_2 extraction2_seq1 channel_1

text: CNS-derived cell-line

text: cnv_ML-DmBG3_2 extraction2_seq1


text: Shou-Wei Ding, UC Riverside

characteristic: INSDC first public

text: live

text: Generic

characteristic: cmv genotype/variation

text: FNY

characteristic: cmv strain

text: 14 days after inoculation

characteristic: collected time

text: Arabidopsis thaliana

text: leaves of wt Arabidopsis thaliana infected with CMVf-Δ2b

text: CMV delta2b in Arabidopsis thaliana (col)


text: Shou-Wei Ding, UC Riverside

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: FNY

text: 14 days after inoculation

text: Arabidopsis thaliana

text: CMV delta2b in Arabidopsis thaliana (col), replicate


text: Shou-Wei Ding, UC Riverside

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: FNY

text: 14 days after inoculation

text: Arabidopsis thaliana

text: leaves of mutant Arabidopsis thaliana infected with CMVf-Δ2b

text: CMV delta2b in rdr1 mutant of Arabidopsis thaliana


text: Shou-Wei Ding, UC Riverside

text: live

text: Generic

text: FNY

text: 14 days after inoculation

text: Arabidopsis thaliana

text: CMV delta2b in rdr1 mutant of Arabidopsis thaliana, replicate


text: Shou-Wei Ding, UC Riverside

text: live

text: Generic

text: FNY

text: 14 days after inoculation

text: Arabidopsis thaliana

text: CMV delta2b in rdr1/2/6 mutant of Arabidopsis thaliana


text: Shou-Wei Ding, UC Riverside

text: live

text: Generic

text: FNY

text: 14 days after inoculation

text: Arabidopsis thaliana

text: CMV delta2b in rdr1/2/6 mutant of Arabidopsis thaliana, replicate


text: North Carolina State University

text: live

text: Generic

text: Synganglia from female American dog ticks, Dermacentor variabilis, were dissected from unfed, partially-fed virgin, partially-fed virgins forcibly detached and incubated for 4 d, partially-fed mated, replete and ovipositing ticks. Pooled mRNA was reverse transcribed with a modified oligo-dT (see Beldade et al. 2006) and in the presence of SMART IV oligo. cDNA was PCR amplified and used for GS FLX library preparation.

characteristic: description

text: Dermacentor variabilis

text: Generic sample from Dermacentor variabilis


characteristic: Coriell cell culture ID

characteristic: Coriell plate

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA06995

characteristic: family id

text: Homo sapiens

text: CEU

characteristic: population

text: father

characteristic: relationship

text: male

characteristic: sex

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

characteristic: NCBI submission package

characteristic: SRA accession

text: Human HapMap individual NA06997

text: Homo sapiens

characteristic: organism

text: CEU

text: mother

text: female

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA07014

text: Homo sapiens

text: CEU

text: mother

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

characteristic: INSDC status

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA07029

characteristic: description

text: Homo sapiens

text: CEU

text: father

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

characteristic: Coriell plate

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA07031

text: Homo sapiens

text: CEU

text: mat grandmother

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA07045

characteristic: family id

text: Homo sapiens

text: CEU

characteristic: population

text: mat grandmother

characteristic: relationship

text: female

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA07435

text: Homo sapiens

text: CEU

text: pat grandfather

text: male

characteristic: sex

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

characteristic: SRA accession

text: Human HapMap individual NA10839

text: Homo sapiens

characteristic: organism

text: CEU

text: mother

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: HapMap

text: Human HapMap individual NA10846

text: Homo sapiens

text: CEU

text: father

text: male

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA10854

text: Homo sapiens

text: CEU

text: mother

text: female

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA10859

characteristic: description

text: Homo sapiens

text: CEU

text: mother

text: female

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA10863

characteristic: family id

text: Homo sapiens

text: CEU

characteristic: population

text: mother

text: female

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA12335

text: Homo sapiens

text: CEU

text: father

characteristic: relationship

text: male

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

characteristic: SRA accession

text: Human HapMap individual NA12336

text: Homo sapiens

text: CEU

text: mother

text: female

characteristic: sex

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: HapMap

text: Human HapMap individual NA12485

text: Homo sapiens

characteristic: organism

text: CEU

text: father

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA12707

text: Homo sapiens

text: CEU

text: father

text: male

text: HapMap sample from Homo sapiens

characteristic: title


characteristic: Coriell cell culture ID

characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA12708

text: Homo sapiens

text: CEU

text: mother

text: female

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA12767

characteristic: description

characteristic: family id

text: Homo sapiens

text: CEU

text: mother

text: female

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA12802

text: Homo sapiens

text: CEU

characteristic: population

text: mother

text: female

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

characteristic: SRA accession

text: Human HapMap individual NA12817

text: Homo sapiens

text: CEU

text: father

characteristic: relationship

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: HapMap

text: Human HapMap individual NA12818

text: Homo sapiens

text: CEU

text: mother

text: female

characteristic: sex

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA18484

text: Homo sapiens

characteristic: organism

text: YRI

text: child

text: female

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18485

text: Homo sapiens

text: YRI

text: child

text: male

text: HapMap sample from Homo sapiens

characteristic: title


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA18497

characteristic: description

text: Homo sapiens

text: YRI

text: child

text: male

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA18500

characteristic: family id

text: Homo sapiens

text: YRI

text: child

text: male

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

characteristic: SRA accession

text: Human HapMap individual NA18503

text: Homo sapiens

text: YRI

characteristic: population

text: child

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: HapMap

text: Human HapMap individual NA18506

text: Homo sapiens

text: YRI

text: child

characteristic: relationship

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA18509

text: Homo sapiens

text: YRI

text: child

text: male

characteristic: sex

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

characteristic: Coriell plate

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18515

text: Homo sapiens

characteristic: organism

text: YRI

text: child

text: male

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA18518

text: Homo sapiens

text: YRI

text: child

text: female

text: HapMap sample from Homo sapiens

characteristic: title


characteristic: External Id

text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

text: Human HapMap individual NA18521

characteristic: description

text: Homo sapiens

text: YRI

text: child

text: male

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

characteristic: SRA accession

text: Human HapMap individual NA18594

text: Homo sapiens

text: CHB

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

text: Human HapMap individual NA18852

characteristic: family id

text: Homo sapiens

text: YRI

characteristic: population

text: mother

text: female

text: HapMap sample from Homo sapiens


text: NCBI

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characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA18854

text: Homo sapiens

text: YRI

text: child

characteristic: relationship

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA18855

text: Homo sapiens

text: YRI

text: mother

text: female

characteristic: sex

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18857

text: Homo sapiens

characteristic: organism

text: YRI

text: child

text: male

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA18859

text: Homo sapiens

text: YRI

text: father

text: male

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

characteristic: NCBI submission package

text: Human HapMap individual NA18860

characteristic: description

text: Homo sapiens

text: YRI

text: child

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA18862

characteristic: family id

text: Homo sapiens

text: YRI

text: father

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA18863

text: Homo sapiens

text: YRI

characteristic: population

text: child

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA18869

text: Homo sapiens

text: YRI

text: child

characteristic: relationship

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18872

text: Homo sapiens

text: YRI

text: child

text: male

characteristic: sex

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA18875

text: Homo sapiens

characteristic: organism

text: YRI

text: child

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

characteristic: NCBI submission package

text: Human HapMap individual NA18911

text: Homo sapiens

text: YRI

text: child

text: male

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA18913

characteristic: description

text: Homo sapiens

text: YRI

text: father

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA18914

characteristic: family id

text: Homo sapiens

text: YRI

text: child

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA18925

text: Homo sapiens

text: YRI

characteristic: population

text: child

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA18930

text: Homo sapiens

text: YRI

text: child

characteristic: relationship

text: female

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

text: live

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA18935

text: Homo sapiens

text: YRI

text: child

text: male

characteristic: sex

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

characteristic: NCBI submission package

text: Human HapMap individual NA19094

text: Homo sapiens

characteristic: organism

text: YRI

text: child

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA19097

text: Homo sapiens

text: YRI

text: child

text: female

text: HapMap sample from Homo sapiens

characteristic: title


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA19100

characteristic: description

text: Homo sapiens

text: YRI

text: child

text: female

text: HapMap sample from Homo sapiens


characteristic: Coriell cell culture ID

text: NCBI

text: live

characteristic: INSDC status

text: HapMap

text: Human HapMap individual NA19101

characteristic: family id

text: Homo sapiens

text: YRI

text: father

text: male

text: HapMap sample from Homo sapiens


characteristic: Coriell plate

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA19103

text: Homo sapiens

text: YRI

characteristic: population

text: child

text: male

text: HapMap sample from Homo sapiens


characteristic: External Id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

text: Human HapMap individual NA19109

text: Homo sapiens

text: YRI

text: child

characteristic: relationship

text: female

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC center name

text: live

text: HapMap

characteristic: NCBI submission package

text: Human HapMap individual NA19115

text: Homo sapiens

text: YRI

text: child

text: female

characteristic: sex

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC first public

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA19120

text: Homo sapiens

characteristic: organism

text: YRI

text: child

text: male

text: HapMap sample from Homo sapiens


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: HapMap

text: Human HapMap individual NA19123

text: Homo sapiens

text: YRI

text: child

text: male

text: HapMap sample from Homo sapiens

characteristic: title