characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Lonza

text: HRE

text: renal epithelial cells

characteristic: cell description

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Bowtie 0.12.5

text: Homo sapiens

text: HRE


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K36me3

text: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.

text: Abcam

text: Lonza

characteristic: biomaterial provider

text: HUVEC

characteristic: cell

text: umbilical vein endothelial cells

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

text: U

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

text: Stamatoyannopoulous - University of Washington

text: Bowtie 0.12.5

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HUVEC

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12865

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

characteristic: labexpid

text: Bowtie 0.12.5

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

text: BJ

characteristic: cell

text: skin fibroblast, The line was established from skin taken from normal foreskin. - ATCC. (PMID: 9916803)

text: normal

characteristic: cell karyotype

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

text: Bowtie 0.12.5

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: BJ

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody description

text: ATCC

text: colorectal adenocarcinoma. (PMID: 1939345)

characteristic: cell description

text: cancer

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM06990

characteristic: biomaterial provider

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.5

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody description

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12864

characteristic: cell description

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Dr. Torok-Storb, FHCRC

characteristic: biomaterial provider

text: HFF-Myc

characteristic: cell

text: foreskin fibroblast cells expressing canine cMyc

text: normal

characteristic: cell karyotype

text: fibroblast

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HFF-Myc

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Millipore

text: ATCC

text: LNCaP

text: prostate adenocarcinoma, LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma. - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.)

characteristic: cell description

text: cancer

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: LNCaP

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: neuroblastoma, BE-C is a clone of the SK-N-BE neuroblastoma cell line (see ATCC CRL-2271) that was established in November of 1972 from a bone marrow biopsy taken from a 2-year-old individual with disseminated neuroblastoma after repeated courses of chemotherapy and radiotherapy.

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Millipore

text: ScienCell

text: HAc

text: astrocytes-cerebellar

characteristic: cell description

text: normal

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: HAc

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

text: cancer

characteristic: cell karyotype

text: endoderm

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

characteristic: cell description

text: cancer

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

characteristic: line

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: Dr. Carl Mann, SBIGeM

characteristic: biomaterial provider

characteristic: cell

text: embryonic lung fibroblast cells, hTERT immortalized, includes Raf1 construct

text: normal

characteristic: cell karyotype

text: endoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

text: Stamatoyannopoulous - University of Washington

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

text: ATCC

text: pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.

characteristic: cell description

text: cancer

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: SK-N-MC

characteristic: cell

text: neuroepithelioma cell line derived from a metastatic supra-orbital human brain tumor, SK-N-MC was isolated in September of l971 and was found to have moderate dopamine - beta - hydroxylase activity as well as formaldehyde induced fluorescence indicative of intracellular catecholamines. - ATCC. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: SK-N-MC

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Input

text: ScienCell

text: HA-sp

text: astrocytes spinal cord

characteristic: cell description

text: normal

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: HA-sp

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ScienCell

characteristic: biomaterial provider

text: HA-sp

characteristic: cell

text: astrocytes spinal cord

text: normal

characteristic: cell karyotype

text: ectoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HA-sp


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

characteristic: antibody description

text: Lonza

text: NHDF-neo

text: neonatal dermal fibroblasts

characteristic: cell description

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: NHDF-neo

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: NHDF-neo

characteristic: cell

text: neonatal dermal fibroblasts

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: NHDF-neo


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

characteristic: antibody description

text: Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/

text: acute promyelocytic leukemia cell line. (PMID: 1995093)

characteristic: cell description

text: cancer

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cervical carcinoma

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.5

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

characteristic: antibody description

text: Lonza

text: HUVEC

text: umbilical vein endothelial cells

characteristic: cell description

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

text: HUVEC

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: promyelocytic leukemia cells, (PMID: 276884)

text: cancer

characteristic: cell karyotype

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.5

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

characteristic: antibody description

text: ATCC

text: embryonic kidney, cells contain Adenovirus 5 DNA (PMID: 11967234)

characteristic: cell description

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Lonza

characteristic: biomaterial provider

text: HRE

characteristic: cell

text: renal epithelial cells

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.5

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HRE

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

characteristic: antibody description

text: Lonza

text: HMEC

text: mammary epithelial cells

characteristic: cell description

text: normal

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

text: HMEC

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.5

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

characteristic: antibody description

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12875

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cancer

characteristic: cell karyotype

text: endoderm

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Millipore

text: Lonza

text: NHLF

text: lung fibroblasts

characteristic: cell description

text: normal

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: NHLF

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: retinoblastoma (PMID: 844036)

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Millipore

text: ATCC

text: SK-N-MC

characteristic: cell description

text: cancer

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: SK-N-MC

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Dr. Carl Mann, SBIGeM

characteristic: biomaterial provider

characteristic: cell

text: embryonic lung fibroblast cells, hTERT immortalized, includes Raf1 construct

text: normal

characteristic: cell karyotype

text: endoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

characteristic: antibody description

text: ScienCell

text: HVMF

text: villous mesenchymal fibroblast cells

characteristic: cell description

text: normal

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Stamatoyannopoulous - University of Washington

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: HVMF

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: Jurkat

characteristic: cell

text: T lymphoblastoid derived from an acute T cell leukemia, The Jurkat cell line was established from the peripheral blood of a 14 year old boy by Schneider et al., and was originally designated JM. - ATCC. (PMID: 68013)

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: Jurkat

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

text: Jurkat

characteristic: cell description

text: cancer

text: mesoderm

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: Jurkat

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

characteristic: antibody description

text: ScienCell

text: HPF

text: pulmonary fibroblasts isolated from lung tissue

characteristic: cell description

text: normal

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: HPF

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ScienCell

characteristic: biomaterial provider

text: HRPEpiC

characteristic: cell

text: retinal pigment epithelial cells

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HRPEpiC

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

characteristic: antibody description

text: ScienCell

text: HRPEpiC

text: retinal pigment epithelial cells

characteristic: cell description

text: normal

text: ectoderm

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: HRPEpiC

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ScienCell

characteristic: biomaterial provider

text: HVMF

characteristic: cell

text: villous mesenchymal fibroblast cells

text: normal

characteristic: cell karyotype

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HVMF

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

characteristic: antibody description

text: ATCC

characteristic: cell description

text: cancer

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/

characteristic: biomaterial provider

characteristic: cell

text: acute promyelocytic leukemia cell line. (PMID: 1995093)

text: cancer

characteristic: cell karyotype

text: mesoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Millipore

text: Lonza

text: HRE

text: renal epithelial cells

characteristic: cell description

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

characteristic: replicate

text: HRE

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K27me3

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: HMEC

characteristic: cell

text: mammary epithelial cells

text: normal

characteristic: cell karyotype

text: ectoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.5

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HMEC

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Millipore

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: UW_ChipSeq_K562_H3K4me3_ZNF_knockout_F4.1-B2

characteristic: title

characteristic: treatment

text: beta-globin LCR deletion (18Kb), heterozygous (Stam)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me3

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cancer

characteristic: cell karyotype

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: Parental K562 (Stam)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

characteristic: antibody description

text: Lonza

text: NHLF

text: lung fibroblasts

characteristic: cell description

text: normal

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: NHLF

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Dr. Torok-Storb, FHCRC

characteristic: biomaterial provider

text: HFF-Myc

characteristic: cell

text: foreskin fibroblast cells expressing canine cMyc

text: normal

characteristic: cell karyotype

text: fibroblast

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HFF-Myc

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

characteristic: antibody description

text: ATCC

text: LNCaP

text: prostate adenocarcinoma, LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma. - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.)

characteristic: cell description

text: cancer

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: LNCaP


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: neuroblastoma, BE-C is a clone of the SK-N-BE neuroblastoma cell line (see ATCC CRL-2271) that was established in November of 1972 from a bone marrow biopsy taken from a 2-year-old individual with disseminated neuroblastoma after repeated courses of chemotherapy and radiotherapy.

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

text: Stamatoyannopoulous - University of Washington

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ScienCell

text: HPF

characteristic: cell description

text: normal

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: HPF

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ScienCell

characteristic: biomaterial provider

text: HPAF

characteristic: cell

text: pulmonary artery fibroblasts

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HPAF

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ScienCell

text: HEEpiC

text: esophageal epithelial cells

characteristic: cell description

text: normal

text: endoderm

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: HEEpiC

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: colorectal carcinoma (PMID: 7214343)

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

text: embryonic kidney, cells contain Adenovirus 5 DNA (PMID: 11967234)

characteristic: cell description

text: normal

text: mesoderm

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ScienCell

characteristic: biomaterial provider

text: HEEpiC

characteristic: cell

text: esophageal epithelial cells

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HEEpiC

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ScienCell

text: HMF

text: mammary fibroblasts

characteristic: cell description

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: HMF

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: hepatocellular carcinoma

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.5

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ScienCell

text: HPAF

text: pulmonary artery fibroblasts

characteristic: cell description

text: normal

text: mesoderm

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: HPAF

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ScienCell

characteristic: biomaterial provider

text: HMF

characteristic: cell

text: mammary fibroblasts

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HMF

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

text: Input

text: ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12865

characteristic: biomaterial provider

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: Millipore

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12864

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cancer

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: UW_ChipSeq_K562_H3K4me3_ZNF_knockout_2C10_C5

characteristic: treatment

text: beta-globin LCR deletion (18Kb), homozygous (Stam)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Millipore

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: UW_ChipSeq_K562_H3K4me3_ZNF_knockout_A4.1-C6

characteristic: title

text: off-target control (Stam)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me3

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cancer

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: UW_ChipSeq_K562_H3K4me3_ZNF_knockout_4C50_C4

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: rabbit polyclonal. Antibody Target: H3K27me3

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

text: Millipore

text: Lonza

text: NHEK

text: epidermal keratinocytes

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

text: NHEK

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: S. Heimfeld Laboratory, FHCRC

characteristic: biomaterial provider

characteristic: cell

text: Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis

text: normal

text: mesoderm

text: human

text: F

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: UW_ChipSeq_Monocytes-CD14+_RO01746_H3K27me3


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: rabbit polyclonal. Antibody Target: H3K36me3

text: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.

text: Abcam

text: ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Stamatoyannopoulous - University of Washington

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ScienCell

characteristic: biomaterial provider

text: HCPEpiC

characteristic: cell

text: choroid plexus epithelial cells

text: normal

text: ectoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HCPEpiC

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

text: colorectal carcinoma (PMID: 7214343)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ScienCell

characteristic: biomaterial provider

text: HCM

characteristic: cell

text: cardiac myocytes

text: normal

text: mesoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HCM

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ScienCell

text: HCPEpiC

text: choroid plexus epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: HCPEpiC

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ScienCell

characteristic: biomaterial provider

text: HCFaa

characteristic: cell

text: cardiac fibroblasts- adult atrial

text: normal

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HCFaa

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ScienCell

text: HCM

text: cardiac myocytes

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: HCM

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ScienCell

characteristic: biomaterial provider

text: HCF

characteristic: cell

text: cardiac fibroblasts

text: normal

text: mesoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HCF

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ScienCell

text: HCFaa

text: cardiac fibroblasts- adult atrial

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: HCFaa

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ScienCell

characteristic: biomaterial provider

text: HBMEC

characteristic: cell

text: brain microvascular endothelial cells

text: normal

text: mesoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HBMEC

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ScienCell

text: HCF

text: cardiac fibroblasts

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: HCF

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: Lonza

characteristic: biomaterial provider

text: NHEK

characteristic: cell

text: epidermal keratinocytes

text: normal

text: ectoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.5

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: NHEK

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: Lonza

text: SAEC

text: small airway epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

text: SAEC

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: WiCell

characteristic: biomaterial provider

text: in vitro differentiated cells

characteristic: biomaterial type

characteristic: cell

text: undifferentiated embryonic stem cells

text: inner cell mass

text: human

text: U

text: cardiac mesoderm

characteristic: cell type

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: UW_ChipSeq_H7-hESC_H3K36me3_diffProtA_2d

characteristic: treatment

text: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 2 days, lineage: mesoderm


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Abcam

text: WiCell

text: undifferentiated embryonic stem cells

characteristic: cell description

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

text: UW_ChipSeq_H7-hESC_H3K36me3_diffProtA_5d

characteristic: title

text: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 5 days, lineage: mesoderm

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.5

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Input

text: ATCC

text: retinoblastoma (PMID: 844036)

characteristic: cell description

text: cancer

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.5

text: Homo sapiens

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: WiCell

characteristic: biomaterial provider

characteristic: cell

text: undifferentiated embryonic stem cells

text: inner cell mass

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: treatment

text: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 14 days, cell sorting and specific growth factors were used, lineage: mesoderm

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: rabbit polyclonal. Antibody Target: H3K27me3

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: WiCell

text: undifferentiated embryonic stem cells

characteristic: cell description

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: UW_ChipSeq_H7-hESC_H3K27me3_diffProtA_14d


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me3

text: Millipore

text: WiCell

characteristic: biomaterial provider

text: in vitro differentiated cells

characteristic: biomaterial type

characteristic: cell

text: undifferentiated embryonic stem cells

text: inner cell mass

text: human

text: U

text: cardiac mesoderm

characteristic: cell type

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: UW_ChipSeq_H7-hESC_H3K4me3_diffProtA_14d

characteristic: title

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: WiCell

text: in vitro differentiated cells

text: undifferentiated embryonic stem cells

characteristic: cell description

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: cardiac mesoderm

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

text: Millipore

text: WiCell

characteristic: biomaterial provider

characteristic: cell

text: undifferentiated embryonic stem cells

text: inner cell mass

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: UW_ChipSeq_H7-hESC_H3K27me3_diffProtA_9d

characteristic: title

characteristic: treatment

text: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 9 days, lineage: mesoderm

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K36me3

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: WiCell

text: undifferentiated embryonic stem cells

characteristic: cell description

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Stamatoyannopoulous - University of Washington

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: UW_ChipSeq_H7-hESC_H3K36me3_diffProtA_14d


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Millipore

text: WiCell

characteristic: biomaterial provider

characteristic: cell

text: undifferentiated embryonic stem cells

text: inner cell mass

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labexpid

text: Bowtie 0.12.7

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: UW_ChipSeq_H7-hESC_H3K27me3_diffProtA_2d

characteristic: title

characteristic: treatment

text: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 2 days, lineage: mesoderm

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: WiCell

text: undifferentiated embryonic stem cells

characteristic: cell description

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

characteristic: lab description

text: Bowtie 0.12.7

text: Homo sapiens

characteristic: replicate

text: UW_ChipSeq_H7-hESC_H3K27me3_diffProtA_5d

text: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 5 days, lineage: mesoderm


characteristic: External Id

text: Biomedical systems Analysis section, MRC IGMM, University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: developmental stage

text: Mus musculus

characteristic: organism

text: embryonic forelimb

characteristic: strain

text: forelimb

characteristic: tissue

characteristic: title


text: live

text: Generic

text: Mus musculus

text: embryonic hindlimb

text: hindlimb


text: Rubin / Pennacchio, Genomics Division, Lawrence Berkeley National Laboratory

text: live

text: Generic

text: SMARCA4/FLAG knock-in

characteristic: genotype/variation

text: Mus musculus

text: pooled male and female

characteristic: sex

text: Mouse embryonic stem cells


text: live

text: Generic

text: SMARCA4/FLAG knock-in

text: Mus musculus

text: pooled male and female

text: Mouse embryonic day 11.5 (e11.5) forebrain


text: live

text: Generic

text: SMARCA4/FLAG knock-in

text: Mus musculus

text: pooled male and female

text: Mouse embryonic day 11.5 (e11.5) heart


Minipig Reads

text: GlaxoSmithKline

text: live

text: Generic

text: Ellegaard Gottingen minipig

characteristic: breed

characteristic: collection date

text: United Kingdom

characteristic: country

text: The Gottingen Minipig was bred at the University of Goettingen, Germany, and is the result of crossbreeding the Minnesota minipig, the Vietnamese potbelly pig and the German Landrace pig. It is a suitable non-rodent model for non-clinical safety testing.

characteristic: description

text: peripheral venous blood of 1 year old animal

characteristic: isolation source

text: Sus scrofa

text: female

characteristic: tax id

text: Genome sequencing of the minipig and beagle animal models yields novel insights for drug discovery and development


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: JunD

characteristic: antibody

text: rabbit polyclonal IgG. Antibody Target: JunD

characteristic: antibody antibodydescription

text: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: protocol

text: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)

characteristic: protocol description

characteristic: replicate

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_T-47D_JunD_v042211.1

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal IgG1; raised against amino acids 254-327 mapping within the DNA binding and dimerization domain of human CREB-1. Antibody Target: CREB1

text: This gene encodes a transcription factor that is a member of the leucine zipper family of DNA binding proteins. This protein binds as a homodimer to the cAMP-responsive element, an octameric palindrome. The protein is phosphorylated by several protein kinases, and induces transcription of genes in response to hormonal stimulation of the cAMP pathway. Alternate splicing of this gene results in two transcript variants encoding different isoforms. (provided by RefSeq)

text: Santa Cruz Biotechnology

text: ATCC

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

text: MACS

text: HudsonAlpha_ChipSeq_A549_CREB1_(SC-240)_DEX_100nM_v041610.2

characteristic: title

characteristic: treatment

text: 1 h with 100 nM Dexamethasone (Myers)


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: endoderm

characteristic: cell lineage

text: M

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: HudsonAlpha_ChipSeq_A549_CREB1_(SC-240)_EtOH_0.02pct_PCR1x

text: 1 h with 0.02% Ethanol (Myers)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: JunD

text: Santa Cruz Biotechnology

text: ATCC

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol description

characteristic: replicate

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_A549_JunD_EtOH_0.02pct_v041610.2

text: 1 h with 0.02% Ethanol (Myers)

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody

text: Mouse monoclonal IgG, recommended for the detection of Stat5a and Stat5b of human origin by WB, IP, IF and ELISA. Antibody Target: STAT5A

characteristic: antibody antibodydescription

text: The protein encoded by this gene is a member of the STAT family of transcription factors. In response to cytokines and growth factors, STAT family members are phosphorylated by the receptor associated kinases, and then form homo- or heterodimers that translocate to the cell nucleus where they act as transcription activators. This protein is activated by, and mediates the responses of many cell ligands, such as IL2, IL3, IL7 GM-CSF, erythropoietin, thrombopoietin, and different growth hormones. Activation of this protein in myeloma and lymphoma associated with a TEL/JAK2 gene fusion is independent of cell stimulus and has been shown to be essential for the tumorigenesis. The mouse counterpart of this gene is found to induce the expression of BCL2L1/BCL-X(L), which suggests the antiapoptotic function of this gene in cells. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: F

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_STAT5A_(SC-74442)_v042211.1

characteristic: title