text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: Coriell

characteristic: biomaterial provider

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_GM12891_PAX5-C20_v041610.1

characteristic: title


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Six5 (K-20) Goat polyclonal IgG, 200?g/ml. Epitope mapping near the C-terminus of Six5 of human origin. Recommended for detection of Six5 of human origin by WB, IF and ELISA. Antibody Target: SIX5

tag: attribute

text: The protein encoded by this gene is a homeodomain-containing transcription factor that appears to function in the regulation of organogenesis. This gene is located downstream of the dystrophia myotonica-protein kinase gene. Mutations in this geneare a cause of branchiootorenal syndrome type 2.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

characteristic: antibody

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_H1-hESC_RevXlinkChromatin_PCR1x

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Rabbit Polyclonal. Antibody Target: GR

characteristic: antibody antibodydescription

text: Glucocorticoid Receptor

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes

text: endoderm

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: protocol

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_ECC-1_GR_DEX_100nM_v041610.2

characteristic: treatment

text: 1 h with 100 nM Dexamethasone (Myers)

text: 1 h with 100 nM DEX (Myers)


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RXRa(D-20) is an affinity purified rabbit polyclonal antibody raised against a peptide mapping at the N-terminus of RXRalpha of human origin. Recommended for detection of RXRalpha of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: RXRA

text: Retinoid X receptors (RXRs) and retinoic acid receptors (RARs), are nuclear receptors that mediate the biological effects of retinoids by their involvement in retinoic acid-mediated gene activation. These receptors exert their action by binding, as homodimers or heterodimers, to specific sequences in the promoters of target genes and regulating their transcription. The protein encoded by this gene is a member of the steroid and thyroid hormone receptor superfamily of transcriptional regulators.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

characteristic: biomaterial provider

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Bcl-3(C-14) is an affinity purified rabbit polyclonal antibody raised against a peptide mapping at the C-terminus of Bcl-3 of human origin. Recommended for detection of Bcl-3 of m, r and h origin by WB, IP, IF and ELISA.

characteristic: antibody antibodydescription

text: Rabbit polyclonal. Bcl-3(C-14) is an affinity purified antibody raised against a peptide mapping at the C-terminus of Bcl-3 of human origin. Recommended for detection of Bcl-3 of mouse, rat and human origin by WB, IP, IF and ELISA. Antibody Target: BCL3

text: This gene is a proto-oncogene candidate. It is identified by its translocation into the immunoglobulin alpha-locus in some cases of B-cell leukemia. The protein encoded by this gene contains seven ankyrin repeats, which are most closely related to those found in I kappa B proteins. This protein functions as a transcriptional co-activator that activates through its association with NF-kappa B homodimers. The expression of this gene can be induced by NF-kappa B, which forms a part of the autoregulatory loop that controls the nuclear residence of p50 NF-kappa B. (Provided by RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_GM12878_BCL3_v041610.1


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP

text: The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

characteristic: protocol description

text: 2-cycles of PCR (Myers)

text: tier 1

text: MACS


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Mouse monoclonal. Antibody Target: NRSF

characteristic: antibody antibodydescription

text: Neuron-restrictive silencer transcription factor

characteristic: antibody targetdescription

text: (Made by Protein Expression Center: pec@caltech.edu)

characteristic: antibody vendorid

text: Dr. David Anderson at Caltech

text: David Anderson, Caltech

text: ATCC

text: hepatocellular carcinoma

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2-cycles of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat polyclonal IgG, epitope mapping at the C-terminus of HDAC2 of human origin. Antibody Target: HDAC2

text: This gene product belongs to the histone deacetylase family. Histone deacetylases act via the formation of large multiprotein complexes, and are responsible for the deacetylation of lysine residues at the N-terminal regions of core histones (H2A, H2B, H3 and H4). This protein forms transcriptional repressor complexes by associating with many different proteins, including YY1, a mammalian zinc-finger transcription factor. (provided by RefSeq)

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_H1-hESC_HDAC2_(SC-6296)_v041610.2

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: RevXlinkChromatin

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: F

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: protocol description

text: 2-cycles of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_GM12878_RevXlinkChromatin_PCR2x


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal, USF-1 (C-20). Antibody Target: USF1

characteristic: antibody antibodydescription

text: The ubiquitously expressed cellular upstream stimulatory factor (USF) consists of USF-1 and USF-2 polypeptides which independently exhibit site-specific DNA binding and are members of the c-Myc-related family of regulatory factors containing helix-loop-helix domains. USF also contains a leucine repeat that is required for efficient DNA binding. USF was originally identified as an up- stream stimulatory factor that binds the core sequence CACGTG in the adeno- virus late promoter. These findings, together with the demonstration of coop- erative interaction between USF and the initiator-binding protein, TFII-I, raises the possibility of a more general involvement of USF in transcriptional regula- tion. While expression of both USF-1 and USF-2 species is ubiquitous, different ratios of USF homo- and heterodimers are found in different cell types.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

characteristic: labversion description

text: Homo sapiens

text: 2-cycles of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Goat polyclonal IgG, epitope mapping at the N-terminus of CTCF of human origin. Antibody Target: CTCF

text: This gene is a member of the BORIS + CTCF gene family and encodes a transcriptional regulator protein with 11 highly conserved zinc finger (ZF) domains. This nuclear protein is able to use different combinations of the ZF domains to bind different DNA target sequences and proteins. (provided by RefSeq)

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: epithelial cell line derived from a mammary ductal carcinoma.

characteristic: cell description

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_T-47D_CTCF_(SC-5916)_DMSO_0.02pct_v041610.2

characteristic: treatment

text: 1 h with 0.02% DMSO (Myers)

text: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal. Antibody Target: NRSF

characteristic: antibody antibodydescription

text: Neuron-restrictive silencer transcription factor

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Dr. David Anderson at Caltech

characteristic: antibody vendorname

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

characteristic: labversion description

text: Homo sapiens

text: 2-cycles of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Rabbit polyclonal. Antibody Target: SRF

text: Serum response transcription factor

text: Santa Cruz Biotechnology

characteristic: cell description

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: protocol description

text: 2-cycles of PCR (Myers)

text: tier 1

text: MACS

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

characteristic: antibody

text: Coriell

characteristic: biomaterial provider

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: F

characteristic: cell sex

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_GM12878_RevXlinkChromatin_PCR1x


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: RevXlinkChromatin

text: ATCC

text: cancer

text: mesoderm

text: F

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labversion

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_K562_RevXlinkChromatin_PCR1x


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal

characteristic: antibody antibodydescription

text: Rabbit polyclonal, raised against C-terminal 127 amino acids of FOXP2 of human origin. Antibody Target: FOXP2

text: transcriptional repressor, involved in development of speech

characteristic: antibody targetdescription

text: This gene encodes a member of the forkhead/winged-helix (FOX) family of transcription factors. Transcriptional repressor, involved in the development of speech

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: ATCC

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: protocol description

text: 2-cycles of PCR (Myers)

text: tier 1

text: SK-N-MC

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1

text: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_HCT-116_YY1_(SC-281)_v041610.1

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

characteristic: labversion

characteristic: labversion description

text: Homo sapiens

text: 2-cycles of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP

text: The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.

text: Santa Cruz Biotechnology

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: protocol description

text: 2-cycles of PCR (Myers)

text: tier 1

text: MACS

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit Polyclonal. Antibody Target: GR

characteristic: antibody antibodydescription

text: Glucocorticoid Receptor

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: ATCC

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_A549_GR_DEX_500pM_PCR1x

characteristic: treatment

text: 1 h with 500 pM DEX (Myers)

text: 1 h with 500 pM Dexamethasone (Myers)


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Rabbit Polyclonal. Antibody Target: GR

text: Glucocorticoid Receptor

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_A549_GR_DEX_50nM_PCR1x

text: 1 h with 50 nM DEX (Myers)

text: 1 h with 50 nM Dexamethasone (Myers)


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit Polyclonal. Antibody Target: GR

characteristic: antibody antibodydescription

text: Glucocorticoid Receptor

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: ATCC

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_A549_GR_DEX_5nM_PCR1x

characteristic: title

text: 1 h with 5 nM DEX (Myers)

characteristic: treatment description

text: 1 h with 5 nM Dexamethasone (Myers)


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: RNA Polymerase II

text: Covance

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

text: 2-cycles of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_A549_Pol2_EtOH_0.02pct_PCR2x

characteristic: treatment

text: 1 h with 0.02% EtOH (Myers)

text: 1 h with 0.02% Ethanol (Myers)


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol description

text: 2-cycles of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_A549_Pol2_DEX_100nM_PCR2x

text: 1 h with 100 nM Dexamethasone (Myers)

text: 1 h with 100 nM DEX (Myers)


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Goat polyclonal IgG, 200 micrograms /ml. Epitope mapping at the N-terminus of Pax-5 of human origin. Recommended for detection of Pax-5 of human origin by WB, IP, IF and ELISA. Antibody Target: PAX5

text: This gene encodes a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA-binding motif, known as the paired box. PAX proteins are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_PAX5-N19_PCR1x

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Sp1(E-3) is a mouse monoclonal antibody raised against amino acids 121-345 mapping near the N-terminus of Sp1 ofhuman origin. Recommended for detection of Sp1 of m, r and h origin by WB, IP, IF and ELISA. Antibody Target: SP1

characteristic: antibody antibodydescription

text: SP1 is a transcription factor that binds to GC box promoters elements and selectively activates mRNA synthesis from genes that contain functional recognition sites. It can interact with G/C-rich motifs from the serotonin receptor promoter.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: RevXlinkChromatin

characteristic: antibody

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: cell

text: embryonic stem cells

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_H1-hESC_RevXlinkChromatin_v041610.2

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NRSF

text: Mouse monoclonal. Antibody Target: NRSF

characteristic: antibody antibodydescription

text: Mouse monoclonal

text: Neuron-restrictive silencer transcription factor

characteristic: antibody targetdescription

text: (Made by Protein Expression Center: pec@caltech.edu)

characteristic: antibody vendorid

text: Dr. David Anderson at Caltech

characteristic: antibody vendorname

text: David Anderson, Caltech

text: WiCell Research Institute

text: M

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: tier 1

text: HudsonAlpha_ChipSeq_H1-hESC_NRSF_v041610.2

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

text: mouse monoclonal, clone 8WG16

text: RNA Polymerase II

text: Covance

text: WiCell Research Institute

characteristic: biomaterial provider

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: (Pol2 8WG16)

characteristic: labversion

text: Homo sapiens

characteristic: protocol description

characteristic: replicate

text: tier 1

text: HudsonAlpha_ChipSeq_H1-hESC_Pol2_v041610.2


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal (p250). Antibody Target: TAF1

characteristic: antibody antibodydescription

text: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

text: 2-cycles of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: RNA Polymerase II

text: Covance

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

text: 2-cycles of PCR (Myers)

text: tier 1

text: MACS

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal. Antibody Target: NRSF

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Dr. David Anderson at Caltech

text: David Anderson, Caltech

text: ATCC

text: neuroectodermal cell line derived from a cerebral brain tumor, (PMID: 1316433)

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol description

text: 2-cycles of PCR (Myers)

characteristic: replicate

text: tier 1

text: MACS


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Mouse monoclonal. Antibody Target: NRSF

text: Dr. David Anderson at Caltech

characteristic: antibody vendorname

text: David Anderson, Caltech

text: ATCC

characteristic: biomaterial provider

text: pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

text: 2-cycles of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit Polyclonal. Antibody Target: GR

characteristic: antibody antibodydescription

text: Glucocorticoid Receptor

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: 2-cycles of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_A549_GR_DEX_100nM_PCR2x

characteristic: title

characteristic: treatment

text: 1 h with 100 nM Dexamethasone (Myers)

characteristic: treatment description

text: 1 h with 100 nM DEX (Myers)


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: NRSF

characteristic: antibody

text: Mouse monoclonal. Antibody Target: NRSF

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Dr. David Anderson at Caltech

characteristic: antibody vendorname

text: David Anderson, Caltech

text: ATCC

characteristic: biomaterial provider

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: protocol description

characteristic: replicate

text: MACS


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit Polyclonal. Antibody Target: GR

characteristic: antibody antibodydescription

text: Glucocorticoid Receptor

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: 2-cycles of PCR (Myers)

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_A549_GR_EtOH_0.02pct_PCR2x

characteristic: title

text: 1 h with 0.02% EtOH (Myers)

text: 1 h with 0.02% Ethanol (Myers)


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Rabbit affinity purified polyclonal antibody. Epitope is the C-terminus of human estrogen receptor alpha (ESR1). Recommended for detection of estrogen receptor of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: ESR1

text: This gene encodes an estrogen receptor, a ligand-activated transcription factor composed of several domains important for hormone binding, DNA binding, and activation of transcription. The protein localizes to the nucleus where it may form a homodimer or a heterodimer with estrogen receptor 2. Estrogen and its receptors are essential for sexual development and reproductive function, but also play a role in other tissues such as bone. Estrogen receptors are also involved in pathological processes including breast cancer, endometrial cancer, and osteoporosis. Alternative splicing results in several transcript variants, which differ in their 5-prime UTRs and use different promoters. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from a mammary ductal carcinoma.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Genestein 100nM treatment

characteristic: labversion

text: Homo sapiens

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_T-47D_ERalpha_a_Genistein_100nM_v041610.2

characteristic: treatment

text: 1 h with 100 nM Genistein (Myers)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

characteristic: cell

text: glioblastoma, astrocytoma, (PMID: 4332744)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol description

characteristic: replicate

text: HudsonAlpha_ChipSeq_U87_RevXlinkChromatin_PCR2x

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: RevXlinkChromatin

text: ATCC

characteristic: biomaterial provider

text: cancer

text: ectoderm

text: M

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: 2-cycles of PCR (Myers)

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_PFSK-1_RevXlinkChromatin_PCR2x

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Sp1(E-3) is a mouse monoclonal antibody raised against amino acids 121-345 mapping near the N-terminus of Sp1 ofhuman origin. Recommended for detection of Sp1 of m, r and h origin by WB, IP, IF and ELISA. Antibody Target: SP1

characteristic: antibody antibodydescription

text: SP1 is a transcription factor that binds to GC box promoters elements and selectively activates mRNA synthesis from genes that contain functional recognition sites. It can interact with G/C-rich motifs from the serotonin receptor promoter.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: WiCell Research Institute

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody

text: Six5 (K-20) Goat polyclonal IgG, 200?g/ml. Epitope mapping near the C-terminus of Six5 of human origin. Recommended for detection of Six5 of human origin by WB, IF and ELISA. Antibody Target: SIX5

text: The protein encoded by this gene is a homeodomain-containing transcription factor that appears to function in the regulation of organogenesis. This gene is located downstream of the dystrophia myotonica-protein kinase gene. Mutations in this geneare a cause of branchiootorenal syndrome type 2.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: tier 1

text: MACS


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of MEF-2 of human origin. Antibody Target: MEF2A

text: The protein encoded by this gene is a DNA-binding transcription factor that activates many muscme-specific, growth factor-induced, and stress-induced genes.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_K562_MEF2A_v041610.1

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of ATF3 of human origin. Antibody Target: ATF3

text: Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

text: tier 1

text: MACS

characteristic: softwareversion


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1

text: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: cell description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol description

characteristic: replicate

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_HepG2_YY1_(SC-281)_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the N-terminus of FOSL1 of human origin. Antibody Target: FOSL1

text: The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq)

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: WiCell Research Institute

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_H1-hESC_FOSL1_(SC-183)_v041610.2

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labversion

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Rabbit Polyclonal IgG. Antibody Target: PU1

text: PU.1 (H-135)

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

text: MACS


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: HRT1 (C-20) Goat polyclonal IgG, 200 ?g/ml. Epitope mapping near the C-terminus of HRT1 of human origin

characteristic: antibody antibodydescription

text: This gene encodes a nuclear protein belonging to the hairy and enhancer of split-related (HESR) family of basic helix-loop-helix (bHLH)-type transcriptional repressors. Expression of this gene is induced by the Notch and c-Jun signal transduction pathways. Two similar and redundant genes in mouse are required for embryonic cardiovascular development, and are also implicated in neurogenesis and somitogenesis. Alternative splicing results in multiple transcript variants.

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: ChipSeq

text: ChIP-Seq

text: HudsonAlpha

characteristic: lab

text: Myers - Hudson Alpha Institute for Biotechnology

characteristic: lab description

text: Homo sapiens

characteristic: protocol

text: 1-cycle of PCR (Myers)

text: tier 1

characteristic: replicate description

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal IgG, raised against a.a. 1-300 mapping at the N-terminus of EBF of human origin. Antibody Target: EBF1

text: Early B-cell factor 1. Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3' (By similarity).

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_GM12878_EBF1_(SC-137065)_PCR1x


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rabbit Polyclonal. Antibody Target: P300

characteristic: antibody antibodydescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal [18B12DE6] to Ctip1. Raised against a cocktail of BCL11A fusion proteins. Reacts with human and mouse. Tested for ICC/IF, IHC-P, IP, WB. Antibody Target: BCL11A

text: This gene encodes a C2H2 type zinc-finger protein by its similarity to the mouse Bcl11a/Evi9 protein. Functions as a myeloid and B-cell proto-oncogene. May play important roles in leukemogenesis and hematopoiesis. An essential factor in lymphopoiesis,is required for B-cell formation in fetal liver. May function as a modulator of the transcriptional repression activity of ARP1 (By similarity)

characteristic: antibody targetdescription

text: abcam

text: Abcam

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_BCL11A_PCR1x


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: HEB (A-20) Rabbit polyclonal IgG, 200 ?g/ml. Epitope mapping within the C-terminus of HEB of human origin. Antibody Target: TCF12

characteristic: antibody antibodydescription

text: The protein encoded by this gene is a member of the basic helix-loop-helix (bHLH) E-protein family that recognizes the consensus binding site (E-box) CANNTG. This encoded protein is expressed in many tissues, among them skeletal muscle, thymus, B- and T-cells, and may participate in regulating lineage-specific gene expression through the formation of heterodimers with other bHLH E-proteins. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined.

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

text: MACS

characteristic: softwareversion


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Goat polyclonal IgG, epitope mapping at the C-terminus of IRF-4 of mouse origin. Antibody Target: IRF4

text: The protein encoded by this gene belongs to the IRF (interferon regulatory factor) family. It functions as a lymphocyte specific transcription factor and negatively regulates TLR signaling by selectively competing with IRF5. A chromosomal translocation involving this gene and the IgH locus, t(6;14)(p25;q32), may be a cause of multiple myeloma (RefSeq).

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_IRF4_(SC-6059)_PCR1x

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Goat polyclonal IgG, 200 micrograms/ml. Epitope mapping at the C-terminus of Pax-5 of human origin. Recommended for detection of Pax-5 of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: PAX5

characteristic: antibody antibodydescription

text: This gene encodes a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA-binding motif, known as the paired box. PAX proteins are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation.

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

characteristic: cell description

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_PAX5-C20_PCR1x


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Kaiso (6F8) Mouse monoclonal IgG1. Raised against amino acids 1-504 representing full length Kaiso of human origin. Recommended for detection of Kaiso of m, r, h, canine and chicken origin by WB, IP, IF and ELISA. Antibody Target: ZBTB33

text: KAISO is a transcriptional regulator that binds, via its zinc fingers, to DNA sequences containing methylated CGCG or to the consensus KAISO-binding site (KBS) TCCTGCNA

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_GM12878_ZBTB33_PCR1x


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Mouse monoclonal (p250). Antibody Target: TAF1

characteristic: antibody antibodydescription

text: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

text: pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.

text: endoderm

characteristic: cell lineage

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

text: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

text: 2-cycles of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_PANC-1_RevXlinkChromatin_PCR2x


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rabbit Polyclonal. Antibody Target: GR

characteristic: antibody antibodydescription

text: Glucocorticoid Receptor

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: ATCC

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_A549_GR_EtOH_0.02pct_PCR1x

characteristic: treatment

text: 1 h with 0.02% EtOH (Myers)

text: 1 h with 0.02% Ethanol (Myers)


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse monoclonal [18B12DE6] to Ctip1. Raised against a cocktail of BCL11A fusion proteins. Reacts with human and mouse. Tested for ICC/IF, IHC-P, IP, WB. Antibody Target: BCL11A

text: This gene encodes a C2H2 type zinc-finger protein by its similarity to the mouse Bcl11a/Evi9 protein. Functions as a myeloid and B-cell proto-oncogene. May play important roles in leukemogenesis and hematopoiesis. An essential factor in lymphopoiesis,is required for B-cell formation in fetal liver. May function as a modulator of the transcriptional repression activity of ARP1 (By similarity)

text: abcam

text: Abcam

text: WiCell Research Institute

characteristic: biomaterial provider

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_H1-hESC_BCL11A_PCR1x

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Oct-2(C-20) is an affinity purified rabbit polyclonal antibody raised against a peptide mapping at the C-terminus of Oct-2 of human origin. Recommended for detection of Oct-2 of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: POU2F2

characteristic: antibody antibodydescription

text: Transcription factor that specifically binds to the octamer motif (5'-ATTTGCAT-3'). Regulates transcription in a number of tissues in addition to activating immunoglobulin gene expression. Modulates transcription transactivation by NR3C1, AR and PGR. Isoform 5 activates the U2 small nuclear RNA (snRNA) promoter.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: Coriell

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_GM12891_POU2F2_PCR1x

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit Polyclonal IgG. Antibody Target: PU1

text: PU.1 (H-135)

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: Coriell

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Coriell

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL2

text: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes

text: abcam

text: Abcam

text: Coriell

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_GM12891_Pol2-4H8_PCR1x


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

text: Rabbit polyclonal IgG, epitope corresponding to amino acids 91-210 mapping within an internal region of BORIS(CTCFL) of human origin. Antibody Target: CTCFL

characteristic: antibody antibodydescription

text: CCCTC-binding factor (CTCF), an 11-zinc-finger factor involved in gene regulation, utilizes different zinc fingers to bind varying DNA target sites. CTCF forms methylation-sensitive insulators that regulate X-chromosome inactivation. This gene is a paralog of CTCF and appears to be expressed primarily in the cytoplasm of spermatocytes, unlike CTCF which is expressed primarily in the nucleus of somatic cells. CTCF and the protein encoded by this gene are normally expressed in a mutually exclusive pattern that correlates with resetting of methylation marks during male germ cell differentiation. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_K562_CTCFL_(SC-98982)_v041610.1

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal IgG, epitope mapping near the N-terminus of SP2 of human origin. Antibody Target: SP2

text: This gene encodes a member of the Sp subfamily of Sp/XKLF transcription factors. Sp family proteins are sequence-specific DNA-binding proteins characterized by an amino-terminal trans-activation domain and three carboxy-terminal zinc finger motifs. This protein contains the least conserved DNA-binding domain within the Sp subfamily of proteins, and its DNA sequence specificity differs from the other Sp proteins. It localizes primarily within subnuclear foci associated with the nuclear matrix, and can activate or in some cases repress expression from different promoters. (provided by RefSeq)

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_K562_SP2_(SC-643)_v041610.2

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Goat polyclonal IgG, epitope mapping at the N-terminus of FOXA2 of human origin. Antibody Target: FOXA2

characteristic: antibody antibodydescription

text: The intronless gene for this transcription coactivator is located between the protocadherin beta and gamma gene clusters on chromosome 5. The protein encoded by this gene is a component of the TFIID protein complex, a complex which binds to the TATA box in class II promoters and recruits RNA polymerase II and other factors. This particular subunit interacts with the largest TFIID subunit, as well as multiple transcription activators. The protein is required for transcription by promoters targeted by RNA polymerase II. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_HepG2_FOXA2_(SC-6554)_v041610.1


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Goat polyclonal IgG, epitope mapping at the C-terminus of HNF4G of human origin. Antibody Target: HNF4G

text: Hepatocyte nuclear factor 4 gamma (HNF4G) also known as NR2A2 (nuclear receptor subfamily 2, group A, member 2) is a nuclear receptor that in humans is encoded by the HNF4G gene

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_HepG2_HNF4G_(SC-6558)_v041610.1

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody antibodydescription

text: Six5 (K-20) Goat polyclonal IgG, 200?g/ml. Epitope mapping near the C-terminus of Six5 of human origin. Recommended for detection of Six5 of human origin by WB, IF and ELISA. Antibody Target: SIX5

text: The protein encoded by this gene is a homeodomain-containing transcription factor that appears to function in the regulation of organogenesis. This gene is located downstream of the dystrophia myotonica-protein kinase gene. Mutations in this geneare a cause of branchiootorenal syndrome type 2.

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: WiCell Research Institute

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1

text: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_YY1_(SC-281)_PCR1x


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

text: Mouse monoclonal IgG, raised against recombinant TAF II p55 (TAF7) of human origin. Antibody Target: TAF7

characteristic: antibody antibodydescription

text: The intronless gene for this transcription coactivator is located between the protocadherin beta and gamma gene clusters on chromosome 5. The protein encoded by this gene is a component of the TFIID protein complex, a complex which binds to the TATA box in class II promoters and recruits RNA polymerase II and other factors. This particular subunit interacts with the largest TFIID subunit, as well as multiple transcription activators. The protein is required for transcription by promoters targeted by RNA polymerase II (RefSeq).

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_K562_TAF7_(SC-101167)_v041610.1

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Goat polyclonal IgG, epitope mapping near the C-terminus of THAP1 of human origin. Antibody Target: THAP1

text: The protein encoded by this gene contains a THAP domain, a conserved DNA-binding domain. This protein colocalizes with the apoptosis response protein PAWR/PAR-4 in promyelocytic leukemia (PML) nuclear bodies, and functions as a proapoptotic factor that links PAWR to PML nuclear bodies. Alternatively spliced transcript variants encoding distinct isoforms have been observed. (provided by RefSeq)

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_K562_THAP1_(SC-98174)_v041610.1

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Goat polyclonal IgG, epitope mapping at the C-terminus of FOXA1 of human origin. Antibody Target: FOXA1

characteristic: antibody antibodydescription

text: This gene encodes a member of the forehead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver (RefSeq).

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from a mammary ductal carcinoma.

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_T-47D_FOXA1_(SC-6553)_DMSO_0.02pct_v041610.2

characteristic: treatment

text: 1 h with 0.02% DMSO (Myers)

text: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

text: mouse monoclonal, clone 8WG16

text: RNA Polymerase II

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: tier 1

text: MACS

characteristic: softwareversion

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody antibodydescription

text: Rabbit polyclonal IgG, epitope corresponding to amino acids 39-140 mapping near the N-terminus of ZEB1 of human origin. Antibody Target: ZEB1

text: This gene encodes a zinc finger transcription factor. The encoded protein likely plays a role in transcriptional repression of interleukin 2. Mutations in this gene have ben associated with posterior polymorphous corneal dystrophy-3 and late-onset Fuchs endothelial corneal dystrophy. Alternatively spliced transcript variants encoding different isoforms have been described. (provided by RefSeq).

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: protocol description

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_ZEB1_(SC-25388)_v041610.2

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_A549_RevXlinkChromatin_EtOH_0.02pct_PCR1x

characteristic: treatment

text: 1 h with 0.02% EtOH (Myers)

text: 1 h with 0.02% Ethanol (Myers)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: RevXlinkChromatin

text: Coriell

characteristic: biomaterial provider

text: lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

text: mesoderm

text: human

characteristic: cell organism

text: F

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: tier 1

text: HudsonAlpha_ChipSeq_GM12878_RevXlinkChromatin_v041610.2

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, EGR-1 (588).

characteristic: antibody antibodydescription

text: Rabbit polyclonal, EGR-1 (588). Antibody Target: EGR1

text: Egr-1, Egr-2, Egr-3 and Egr-4 are nuclear transcription factors belonging to the Egr C2H2-type zinc-finger protein family and containing three C2H2-type zinc fingers. As immediate early proteins, Egr transcription factors are rapidly induced by diverse extracellular stimuli. Egr proteins are subject to tight differential control through diverse mechanisms at several levels of regulation including transcriptional, translational and post-translational (including glyco- sylation, phosphorylation and redox) mechanisms and protein-protein inter- action. Egr-1 binds to the DNA sequence 5'-CGCCCCCGC-3' (EGR-site), there- by activating transcription of target genes whose products are required for mitogenisis and differentiation. Egr-2 binds specific DNA sites located in the promoter region of HoxA4. Egr-2 defects cause congenital hypomyelination neuropathy (also designated Charcot-Marie-tooth disease) and Dejerine- Sottas neuropathology (also designated hereditary motor and sensory neuro- pathy III. Egr-3 is involved in muscle spindle development and is expressed in T cells 20 minutes following activation. EGR-4 binds to the EGR consensus motif GCGTGGGCG, functions as a transcriptional repressor, and displays autoregulatory activities, downregulating its on gene promoter in a dose dependent manner.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_K562_Egr-1_v041610.1

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Elf-1 of human origin. Antibody Target: ELF1

text: This gene encodes an E26 transformation-specific related transcription factor. The encoded protein is primarily expressed in lymphoid cells and acts as both an enhancer and a repressor to regulate transcription of various genes. Alternative splicing results in multiple transcript variants. (provided by RefSeq)

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: cell description

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_HepG2_ELF1_(SC-631)_v041610.1


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal. Antibody Target: RAD21

characteristic: antibody antibodydescription

text: Rabbit polyclonal

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_Rad21_v041610.1

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_A549_RevXlinkChromatin_DEX_100nM_PCR1x

characteristic: treatment

text: 1 h with 100 nM Dexamethasone (Myers)

characteristic: treatment description

text: 1 h with 100 nM DEX (Myers)


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

text: Kaiso (6F8) Mouse monoclonal IgG1. Raised against amino acids 1-504 representing full length Kaiso of human origin. Recommended for detection of Kaiso of m, r, h, canine and chicken origin by WB, IP, IF and ELISA. Antibody Target: ZBTB33

text: KAISO is a transcriptional regulator that binds, via its zinc fingers, to DNA sequences containing methylated CGCG or to the consensus KAISO-binding site (KBS) TCCTGCNA

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_HepG2_ZBTB33_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

text: Goat polyclonal IgG, epitope mapping at the N-terminus of CTCF of human origin. Antibody Target: CTCF

text: This gene is a member of the BORIS + CTCF gene family and encodes a transcriptional regulator protein with 11 highly conserved zinc finger (ZF) domains. This nuclear protein is able to use different combinations of the ZF domains to bind different DNA target sequences and proteins. (provided by RefSeq)

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_H1-hESC_CTCF_(SC-5916)_v041610.2

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

text: Goat polyclonal IgG, epitope mapping near the C-terminus of MEF2C of human origin. Antibody Target: MEF2C

text: This locus encodes a member of the MADS box transcription enhancer factor 2 (MEF2) family of proteins, which play a role in myogenesis. The encoded protein, MEF2 polypeptide C, has both trans-activating and DNA binding activities. This protein may play a role in maintaining the differentiated state of muscle cells. Mutations and deletions at this locus have been associated with severe mental retardation, stereotypic movements, epilepsy, and cerebral malformation. Alternatively spliced transcript variants have been described. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_MEF2C_(SC-13268)_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rabbit affinity purified polyclonal antibody. Epitope is the C-terminus of human estrogen receptor alpha (ESR1). Recommended for detection of estrogen receptor of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: ESR1

text: This gene encodes an estrogen receptor, a ligand-activated transcription factor composed of several domains important for hormone binding, DNA binding, and activation of transcription. The protein localizes to the nucleus where it may form a homodimer or a heterodimer with estrogen receptor 2. Estrogen and its receptors are essential for sexual development and reproductive function, but also play a role in other tissues such as bone. Estrogen receptors are also involved in pathological processes including breast cancer, endometrial cancer, and osteoporosis. Alternative splicing results in several transcript variants, which differ in their 5-prime UTRs and use different promoters. (provided by RefSeq)

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes

text: endoderm

characteristic: cell lineage

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: replicate

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_ECC-1_ERalpha_a_DMSO_0.02pct_v041610.2

characteristic: treatment

text: 1 h with 0.02% DMSO (Myers)

text: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: endoderm

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_ECC-1_ERalpha_a_Estradiol_10nM_v041610.2

characteristic: title

text: 1 h with 10 nM Estradiol (Myers)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

text: SK-N-MC

characteristic: cell

text: neuroepithelioma cell line derived from a metastatic supra-orbital human brain tumor, SK-N-MC was isolated in September of l971 and was found to have moderate dopamine - beta - hydroxylase activity as well as formaldehyde induced fluorescence indicative of intracellular catecholamines. - ATCC. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: tier 1

text: SK-N-MC

text: HudsonAlpha_ChipSeq_SK-N-MC_RevXlinkChromatin_v041610.1

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal, GABPa(G-1), IgG1

characteristic: antibody antibodydescription

text: Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP

text: The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: WiCell Research Institute

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rabbit polyclonal

text: Rabbit polyclonal. Antibody Target: SRF

text: Serum response transcription factor

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS