characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Brg-1 (G-7) is a mouse monoclonal antibody raised against amino acids 209-296 mapping near the N-terminus of Brg-1 of human origin. Antibody Target: BRG1

characteristic: antibody antibodydescription

text: Brg1 (SMARCA4) is an ATPase subunit of the SWI/SNF chromatin-remodeling complex.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-mus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded

text: Homo sapiens

characteristic: replicate


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

tag: attribute

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: cell

text: fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: normal

text: endoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Rabbit polyclonal against human ZNF143 (amino acids 283-626)-6his fusion protein. Antibody Target: Znf143

text: Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates to efficient U6 RNA polymerase III transcription via its interaction with CHD8

text: Proteintech

text: WiCell Research Institute

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_H1-hESC_Znf143_(16618-1-AP)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-goat

text: Input signal from Normal Goat IgG ChIP-seq.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: c-Myc

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

characteristic: antibody antibodydescription

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal recognizing a region between residue 1800 and the C-terminus (residue 1863) of human Breast Cancer Gene 1. Antibody Target: BRCA1

text: Nuclear phosphoprotein that plays a role in maintaining genomic stability, and acts as a tumor suppressor. Associates with RNA polymerase II, and through the C-terminal domain, also interacts with histone deacetylase complexes. Plays a role in transcription, DNA repair of double-stranded breaks, and recombination. Mutations in this gene are responsible for approximately 40% of inherited breast cancers and more than 80% of inherited breast and ovarian cancers.

text: Bethyl Labratories

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_H1-hESC_BRCA1_(A300-000A)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Max

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

characteristic: antibody antibodydescription

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: This replaces a previous dataset for the cell line/antibody which was under sequenced due to technical limits at the time.

characteristic: labversion

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CEBPB

characteristic: antibody

text: Rabbit polyclonal IgG. Antibody Target: CEBPB

text: epitope mapping at the C-terminus of C/EBP-beta of rat origin

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis

text: normal

text: endoderm

text: human

text: F

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal. Raised against synthetic peptide corresponding to amino acids 147-163 of human MAFF. The immunizing peptide does not cross-react with other members of the family. Antibody Target: MafF

characteristic: antibody antibodydescription

text: The protein encoded by this gene is a (bZIP) transcription factor that lacks a transactivation domain. It is known to bind the US-2 DNA element in the promoter of the oxytocin receptor (OTR) gene and most likely heterodimerizes with other leucine zipper-containing proteins to enhance expression of the OTR gene during term pregnancy. Can also form homodimers, and since it lacks a transactivation domain, the homodimer may act as a repressor of transcription. May also be involved in the cellular stress response.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Sigma-Aldrich

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: Stanford_ChipSeq_K562_MafF_(M8194)_IgG-rab


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Jun

characteristic: antibody

text: Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: std

text: Standard input signal for most experiments.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment

text: 30 m of Interferon alpha (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Coriell

characteristic: cell

text: lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded. Data paired with GM18505_IgG_Control.

characteristic: labversion

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Illumina 2.0, low confidence sequences excluded

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Coriell

characteristic: cell

text: lymphoblastoid, International HapMap Project, Han Chinese in Beijing, China, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded. Data paired with GM12878_IgG_Control.

characteristic: labversion

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: NFKB

text: Rabbit polyclonal. Antibody Target: NFKB

characteristic: antibody antibodydescription

text: Epitope mapping at the C-terminus of NF-kappa-B p65 of human origin, recommended for detection of NFkB p65 of m, r and h origin by WB, IP, IF and ELISA

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, Data paired with GM12891_IgG_Control.

characteristic: labversion

text: Homo sapiens

text: Stanford_ChipSeq_GM12891_TNFa_NFKB_IgG-rab

text: TNFa

characteristic: treatment

text: human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NFKB

characteristic: antibody

characteristic: antibody antibodydescription

text: Santa Cruz Biotech

text: Coriell

characteristic: biomaterial provider

text: lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded. Data paired with GM10847_IgG_Control

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM10847_TNFa_NFKB_IgG-rab

characteristic: title

text: TNFa

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody description

text: Coriell

characteristic: cell

text: lymphoblastoid, International HapMap Project, Japanese in Tokyo, Japan, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

characteristic: labversion

text: Homo sapiens

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NFKB

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell

characteristic: biomaterial provider

text: lymphoblastoid NIGMS Human Genetic Cell Repository, DNA Polymorphism Discovery Resource Collection, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: U

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded. Data paired with GM15510_IgG_Control.

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM15510_TNFa_NFKB_IgG-rab

characteristic: title

text: TNFa

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

text: RNA Polymerase II

text: Covance

text: Coriell

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded.

characteristic: labversion

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NFKB

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: NFKB

characteristic: antibody antibodydescription

text: Epitope mapping at the C-terminus of NF-kappa-B p65 of human origin, recommended for detection of NFkB p65 of m, r and h origin by WB, IP, IF and ELISA

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded. Data paired with GM18951_IgG_Control.

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM18951_TNFa_NFKB_IgG-rab

characteristic: title

text: TNFa

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mouse polyclonal. Antibody Target: ZNF263

text: ZNF263 (NP_005732, 201 a.a. ~ 299 a.a) partial recombinant protein with GST tag.

text: Novus Biologicals

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

characteristic: lab description

text: Fragmented using Bioruptor, precipitated with StaphA

characteristic: labversion

text: Homo sapiens

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: embryonic kidney, cells contain Adenovirus 5 DNA (PMID: 11967234)

text: normal

text: mesoderm

text: human

text: U

text: std

text: Standard input signal for most experiments.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-mus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: Control signal from sonication into large fragments of DNA (350-800 bp).

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: remapped from hg18

text: Homo sapiens

characteristic: replicate

text: Yale_ChipSeq_HeLa-S3_Input_Large_Fragment


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: MNase

text: Input signal from MNase digested DNA.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: Control signal from Naked DNA.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

text: remapped from hg18

text: Homo sapiens

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Max

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

characteristic: antibody antibodydescription

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

characteristic: lab description

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Anti-GATA-1 rabbit polyclonal antibody was generated by using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1

text: GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells.

text: Donated by Dr. E.H. Bresnick, UW Madison

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Fragmented using Bioruptor, precipitated with protein A agarose beads,

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: JunD

characteristic: antibody

text: rabbit polyclonal IgG. Antibody Target: JunD

characteristic: antibody antibodydescription

text: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

characteristic: lab description

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal raised against synthetic peptide representing a portion within the last 100 amino acids of the human Structural Maintenance of Chromosomes-3 conjugated to KLH. Antibody Target: SMC3

text: Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication.

text: Abcam

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HepG2_SMC3_(ab9263)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal against peptide conjugated to KLH derived from within residues 1600 - 1700 of S. cerevisiae RNA polymerase II CTD repeat YSPTSPS, phosphorylated at S2. Antibody Target: POL2S2

characteristic: antibody antibodydescription

text: RNA polymerase II, large subunit- specific for phosphorylated C-terminal domain.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_HepG2_Pol2(phosphoS2)_IgG-rab

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal. Raised against an amino acids 60 to 99 of human HMGN3. Vendor recommeds its use for detection of HMGN3 in human samples using immunohistochemistry. Antibody Target: HMGN3

text: HMGN3 is a high-mobility group protein. These proteins are small, 8 to 11 kDa, ubiquitous proteins believed to play a role in chromatin structure. HMGNs bind to nucleosomes between the histone core and DNA and reduce chromatin compaction. As a result HMGNs, HMGN3 included, are believed to increase access to DNA for DNA replication, repair and transcription. HMGN3 has specifically been implicated in the action of Thyroid horomone receptors.

text: Novus Biologicals

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the N-terminus of p300 of human origin. Antibody Target: P300

characteristic: antibody antibodydescription

text: Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_HepG2_p300_(SC-584)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: IRF-1 (C-20) is an affinity purified rabbit polyclonal antibody raised against a peptide mapping at the C-terminus of IRF-1 of human origin. Antibody Target: IRF1

text: Interferon regulatory factor 1 is a member of the interferon regulatory transcription factor (IRF) family. IRF1 serves as an activator of interferons alpha and beta transcription and also functions as a transcription activator of genes induced by interferons alpha, beta, and gamma. IRF1 has been shown to play roles in regulating apoptosis and tumor suppression.

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment

text: 30 m of Interferon alpha (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goal polyclonal. Raised against an internal region of human CycT2a/b. Recommeded for detection of CycT2a/b of rat, mouse or human origin. Vendor recommeds it use for the folloiwng applications: WB, IF and ELISA. Antibody Target: CCNT2

characteristic: antibody antibodydescription

text: CycT2 is one of three cyclins that can form a heterodimer with cyclin-dependent kinase 9 (CDK9). The heterodimer is known as positive elongation factor b (P-TEFb) and is responsible for the phosphophorylation of Ser2 of the heptad repeat in the C-terminal domain of RNA polymerase II as well as the negative elongation factors DSIF (hSpt4/hSpt5) and NELF. Phosphorylation of RNA polymerase II and the negative elongation factors by P-TEFb promotes elongation. CycT2 contains a leucine rich domain capable of binding to the C-terminal domain of RNA polymerase II.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: c-Myc

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment

text: Interferon gamma treatment - 30 minutes (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Interferon gamma treatment - 6 hours (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Struhl laboratory

characteristic: cell

text: mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens

characteristic: organism

text: Harvard_ChipSeq_MCF10A-Er-Src_EtOH_0.01pct_12hr_Input_std

characteristic: title

characteristic: treatment

text: 12 h with 0.01% Ethanol (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal; epitope mapping at the C-terminus of Stat3 of mouse origin. Antibody Target: STAT3

characteristic: antibody antibodydescription

text: Member of STAT family. After phosphorylation in response to cytokines and growth factors (including IFNs, EGF, IL5, IL6, HGF, LIF and BMP2), forms homo- or heterodimers that translocate to nucleus and activate transcription. Activates expression of a variety of genes with roles in processes such as cell growth and apoptosis.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Struhl laboratory

characteristic: biomaterial provider

text: normal

text: ectoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Harvard_ChipSeq_MCF10A-Er-Src_EtOH_0.01pct_12hr_STAT3_std

text: 12 h with 0.01% Ethanol (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal recognizing a region between residue 1800 and the C-terminus (residue 1863) of human Breast Cancer Gene 1. Antibody Target: BRCA1

text: Nuclear phosphoprotein that plays a role in maintaining genomic stability, and acts as a tumor suppressor. Associates with RNA polymerase II, and through the C-terminal domain, also interacts with histone deacetylase complexes. Plays a role in transcription, DNA repair of double-stranded breaks, and recombination. Mutations in this gene are responsible for approximately 40% of inherited breast cancers and more than 80% of inherited breast and ovarian cancers.

text: Bethyl Labratories

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HeLa-S3_BRCA1_(A300-000A)_IgG-rab

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CEBPB

characteristic: antibody

text: Rabbit polyclonal IgG. Antibody Target: CEBPB

characteristic: antibody antibodydescription

text: epitope mapping at the C-terminus of C/EBP-beta of rat origin

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal to TFIIF - Recombinant full length protein - RAP 74 subunit of TF11F. Antibody Target: GTF2F1

text: RNA polymerase II transcription factor TFIIF is a heterodimer with 2 subunits: one, referred to as RAP74. TFIIF appears to assist TFIIB in recruiting RNA polymerase II into a preinitiation complex. It also affects RNA transcription by suppressing transient pausing of the polymerase at locations on the DNA template.

text: Abcam

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HeLa-S3_GTF2F1_(AB28179)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit Monoclonal antibody against a synthetic peptide corresponding to residues surrounding Val90 of human PRDI-BF1. Antibody Target: PRDM1

characteristic: antibody antibodydescription

text: Transcriptional repressor that binds specifically to the PRDI element in the promoter of the beta-interferon gene. Drives the maturation of B-lymphocytes into Ig secreting cells.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Cell Signaling Technology

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_HeLa-S3_PRDM1_(9115)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal against RFX5 peptide corresponding to a region at amino acids 320 to 494 of the human protein conjugated to Keyhole Limpet Hemocyanin. Antibody Target: RFX5

text: Activates transcription from class II MHC promoters. Recognizes X-boxes. Mediates cooperative binding betweenRFX and NF-Y. RFX binds the X1 box of MHC-II promoters

text: Rockland Immunochemicals

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM12878_RFX5_(200-401-194)_IgG-mus

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal; epitope mapping at the C-terminus of Stat3 of mouse origin. Antibody Target: STAT3

characteristic: antibody antibodydescription

text: Member of STAT family. After phosphorylation in response to cytokines and growth factors (including IFNs, EGF, IL5, IL6, HGF, LIF and BMP2), forms homo- or heterodimers that translocate to nucleus and activate transcription. Activates expression of a variety of genes with roles in processes such as cell growth and apoptosis.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Mouse monoclonal. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2

text: Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3').

text: abcam

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the N-terminus of p300 of human origin. Antibody Target: P300

characteristic: antibody antibodydescription

text: Encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. Functions as histone acetyltransferase and regulates transcription via chromatin remodeling. Acetylates all four core histones in nucleosomes. Mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_GM12878_p300_(SC-584)_IgG-mus


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rockland Immunochemicals

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HeLa-S3_RFX5_(200-401-194)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-mus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Santa Cruz Biotech

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM12878_p300_(SC-584)_std

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: A rabbit polyclonal antibody raised against a recombinant ZNF217 protein corresponding to the 1562-2207 nucleotides from a human ZNF217 cDNA. Antibody Target: ZNF217

characteristic: antibody antibodydescription

text: ZNF217 is an important oncogene based on the high frequency of amplification and overexpression in many cancer types, but its molecular mode of gene regulation is poorly understood. ZNF217 has been purified in complexes that contain repressor proteins such as CtBP2, suggesting that it acts as a transcriptional repressor. ZNF217 contains seven C2H2 zinc finger domains and has been shown to bind to gene promoters

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: From the lab of Dr. Paul Yaswen

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

text: ectoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

text: Farnham - University of Southern California

characteristic: lab description

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Coriell

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM12878_TNFa_Input_IgG-rab

characteristic: title

text: TNFa

characteristic: treatment

text: human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal against RFX5 peptide corresponding to a region at amino acids 320 to 494 of the human protein conjugated to Keyhole Limpet Hemocyanin. Antibody Target: RFX5

characteristic: antibody antibodydescription

text: Activates transcription from class II MHC promoters. Recognizes X-boxes. Mediates cooperative binding betweenRFX and NF-Y. RFX binds the X1 box of MHC-II promoters

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Rockland Immunochemicals

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_K562_RFX5_(200-401-194)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal, maps to a region between residues 350 and the C-terminus (residue 412). Antibody Target: BHLHE40

text: This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differentiation.

text: Novus

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HepG2_BHLHE40_(NB100-1800)_IgG-rab

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse monoclonal IgG raised against human recombinant GATA-3 (amino acids 1-264). Antibody Target: GATA3

characteristic: antibody antibodydescription

text: This gene encodes a protein which belongs to the GATA family of transcription factors. The protein contains two GATA-type zinc fingers and is a n important regulator of T-cell development and plays an important role in endothelial cell biology. Defects in this gene are the cause of hypoparathyroidism with sensorineural deafness and renal dysplasia (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: neuroblastoma clonal subline of the neuroepithelioma cell line SK-N-SH from the 1970 bone marrow biopsy of a 4-year-old girl with metastatic neuroblastoma, trisomy of 1q

text: cancer

text: ectoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: USC_ChipSeq_SH-SY5Y_GATA3_(SC-269)_UCDavis


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal against human ZNF143 (amino acids 283-626)-6his fusion protein. Antibody Target: Znf143

text: Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates to efficient U6 RNA polymerase III transcription via its interaction with CHD8

text: Proteintech

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_K562_Znf143_(16618-1-AP)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: JunD

characteristic: antibody

text: rabbit polyclonal IgG. Antibody Target: JunD

characteristic: antibody antibodydescription

text: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal; epitope corresponding to amino acids 1-425 of IRF-3 of human origin. Antibody Target: IRF3

text: Mediates interferon-stimulated response element (ISRE) promoter activation. DsRNA leads to IRF3 phosphorylation on the C-terminal serine/threonine cluster. This induces a conformational change, leading to its dimerization, nuclear localization and association with CREB binding protein (CREBBP) to form dsRNA-activated factor 1 (DRAF1), a complex which activates the transcription of genes under the control of ISRE.

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: RAD21

characteristic: antibody antibodydescription

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Max

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

text: Santa Cruz Biotech

text: Lonza

text: HUVEC

characteristic: cell

text: umbilical vein endothelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HUVEC

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: SETDB1

characteristic: antibody antibodydescription

text: SET domain, bifurcated 1, the SET domain is a highly conserved, approximately 150-amino acid motif implicated in the modulation of chromatin structure

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Proteintech Group

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

text: Farnham - University of Southern California

characteristic: lab description

text: remapped from hg18, Fragmented using MNase and used proteinA agarose beads for ChIPs, PeakSeq 1.0 (fdr 0.001)

text: Homo sapiens

characteristic: replicate

text: MNaseD

characteristic: treatment

text: Fragmented using micrococcal nuclease digestion


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rabbit polyclonal, immunogen: A synthetic peptide that maps to a region between residues 100 and 150 of human TBL1-related Protein 1 using the numbering given in SwissProt entry Q9BZK7.

text: F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation

text: Novus Biologicals

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_K562_TBLR1_(NB600-270)_IgG-rab

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, immunogen: Recombinant full length protein (Human). Antibody Target: TBLR1

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_K562_TBLR1_(ab24550)_IgG-rab


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: BACH1 (C-20) is an affinity purified goat polyclonal antibody raised against a peptide mapping near the C-terminus of BACH1 of human origin. Antibody Target: Bach1

text: This gene encodes a transcription factor that belongs to the cap'n'collar type of basic region leucine zipper factor family (CNC-bZip). The encoded protein contains broad complex, tramtrack, bric-a-brac/poxvirus and zinc finger (BTB/POZ) domains, which is atypical of CNC-bZip family members. These BTB/POZ domains facilitate protein-protein interactions and formation of homo- and/or hetero-oligomers. When this encoded protein forms a heterodimer with MafK, it functions as a repressor of Maf recognition element (MARE) and transcription is repressed. Multiple alternatively spliced transcript variants have been identified for this gene. (provided by RefSeq)

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_K562_Bach1_(sc-14700)_IgG-rab

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse polyclonal. Antibody Target: ZNF263

characteristic: antibody antibodydescription

text: ZNF263 (NP_005732, 201 a.a. ~ 299 a.a) partial recombinant protein with GST tag.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Novus Biologicals

characteristic: antibody vendorname

text: Invitrogen

characteristic: biomaterial provider

text: embryonic kidney cells transformed with Adenovirus 5 DNA stably expressing tetracycline repressor, HEK293 (ATCC number CRL-1573) is the parental cell line, hypotriploid, XXX

text: cancer

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rabbit polyclonal, epitope corresponding to amino acids 246-310 mapping within an internal region of CoREST of human origin recommended for detection of CoREST of mouse, rat and human origin. Antibody Target: COREST (sc30189)

text: Essential component of the BHC complex, a corepressor complex that represses transcription of neuron-specific genes in non-neuronal cells. In the BHC complex, it serves as a molecular beacon for the recruitment of molecular machinery, including MeCP2 and SUV39H1, that imposes silencing across a chromosomal interval. Plays a central role in demethylation of Lys-4 of histone H3 by promoting demethylase activity of KDM1A on core histones and nucleosomal substrates.

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HeLa-S3_COREST_(sc-30189)_IgG-rab

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_HepG2_COREST_(sc-30189)_IgG-rab


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Santa Cruz Biotech

text: WiCell Research Institute

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_H1-hESC_Bach1_(sc-14700)_IgG-rab

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal to TFIIF - Recombinant full length protein - RAP 74 subunit of TF11F. Antibody Target: GTF2F1

characteristic: antibody antibodydescription

text: RNA polymerase II transcription factor TFIIF is a heterodimer with 2 subunits: one, referred to as RAP74. TFIIF appears to assist TFIIB in recruiting RNA polymerase II into a preinitiation complex. It also affects RNA transcription by suppressing transient pausing of the polymerase at locations on the DNA template.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: IgG-rab

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_H1-hESC_GTF2F1_(AB28179)_IgG-rab


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rabbit polyclonal - Anti-BRF antibody 128 was raised by immunising rabbits with synthetic peptide KISSKINYSVLRGLS (human BRF residues 533-547) coupled to keyhole limpet haemocyanin. Antibody Target: BRF1

text: 'B-related factor 1', subunit of RNA polymerase III transcription initiation factor IIIB

text: Donated by Dr. RJ White, The Beatson Institute for Cancer Research

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens

characteristic: organism

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_GM12878_COREST_(sc-30189)_IgG-mus


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Mouse polyclonal antibody raised against a partial recombinant ZNF274 (GST-fusion of a.a.420-531 of human ZNF274 protein). Works in IP, WB and ELISA. Antibody Target: ZNF274

text: ZNF274 is a zinc finger protein containing five C2H2-type zinc finger domains, two Kruppel-associated box A (KRABA) domains, and a leucine-rich SCAN domain. The encoded protein has been suggested to be a transcriptional repressor. It localizes predominantly to the nucleolus.

text: ABNOVA

text: ATCC

characteristic: cell

text: malignant pluripotent embryonal carcinoma (NTera-2), The NTERA-2 cl.D1 cell line is a pluripotent human testicular embryonal carcinoma cell line derived by cloning the NTERA-2 cell line. - ATCC. (PMID: 6694356)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Fos

characteristic: antibody

text: Rabbit polyclonal to amino acids 210-335 mapping at the C-terminus of c-Fos of human origin. Antibody Target: c-Fos

characteristic: antibody antibodydescription

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: HUVEC

text: umbilical vein endothelial cells

text: normal

text: mesoderm

text: human

text: U

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: HUVEC


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: embryonic kidney, cells contain Adenovirus 5 DNA (PMID: 11967234)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

characteristic: line

text: Homo sapiens

characteristic: organism

text: USC_ChipSeq_HEK293_Input_UCDavis (superseded by GSE136429)

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: KAP1

characteristic: antibody antibodydescription

text: KRAB Associated Protein 1, helps regulate transcriptional repression

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: osteosarcoma from the tibia of a 15 year old, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972, (PMID: 6081590)

text: cancer

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

text: RNA Polymerase II

text: Covance

text: Struhl laboratory

text: mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens

characteristic: organism

text: Harvard_ChipSeq_MCF10A-Er-Src_EtOH_0.01pct_Pol2_std

characteristic: title

characteristic: treatment

text: 36 h with 0.01% Ethanol (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: GATA2

characteristic: antibody antibodydescription

text: GATA binding protein 2

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Donated by Dr. E.H. Bresnick, UW Madison

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: neuroblastoma clonal subline of the neuroepithelioma cell line SK-N-SH from the 1970 bone marrow biopsy of a 4-year-old girl with metastatic neuroblastoma, trisomy of 1q

text: cancer

text: ectoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rabbit polyclonal IgG. Antibody Target: ELK4

text: This gene is a member of the Ets family of transcription factors and of the ternary complex factor (TCF) subfamily. (provided by RefSeq)

text: Santa Cruz Biotech

text: ATCC

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal; epitope mapping at the C-terminus of Stat3 of mouse origin. Antibody Target: STAT3

characteristic: antibody antibodydescription

text: Member of STAT family. After phosphorylation in response to cytokines and growth factors (including IFNs, EGF, IL5, IL6, HGF, LIF and BMP2), forms homo- or heterodimers that translocate to nucleus and activate transcription. Activates expression of a variety of genes with roles in processes such as cell growth and apoptosis.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Struhl laboratory

characteristic: biomaterial provider

characteristic: cell

text: normal

text: ectoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Harvard_ChipSeq_MCF10A-Er-Src_EtOH_0.01pct_STAT3_std

characteristic: treatment

text: 36 h with 0.01% Ethanol (Snyder)