text: live

text: Generic

text: Forty five day-old female C57BL/6 mice were obtained from Charles River Laboratories (Raleigh, NC) and acclimated for 2 weeks. Mice (n = 5/group) received 50 ppm arsenic in the form of arsenate in their drinking water for up to 12 weeks. At the end of the study, mice were killed by exsanguination under CO2 anesthesia. The lung tissue was harvested immediately, placed in RNAlater™ (Ambion, Austin, TX), and stored at −70 °C. A portion of frozen lung tissue was removed from each sample and used to isolate genomic DNA. Tissue from each treatment group was suspended in 1.2 ml cell lysis buffer (10 mM NaCl, 10 mM TrisCl pH 7.8, 2 mM EDTA) on ice and homogenized for 2 min (sterile 3 mm steel ball, Mixer Mill 301, Retsch, Newtown, PA). After addition of 125 μl 10% SDS solution and 23 μl Proteinase K (20 mg/ml) (Invitrogen, Carlsbad, CA) the homogenate was incubated at 55 °C for 3 h which was followed by the addition of 13 μl DNAse-free RNAse A (2 mg/ml) (Sigma-Aldrich, St. Louis, MO) and an incubation for 30 min at 37 °C. Protein precipitation was carried out by mixing 1340 μl tissue lysate 1:1 with Phenol:Chloroform:Isoamylalcohol (Invitrogen, Carlsbad, CA) in Phase Lock Gel Heavy Tubes (5Prime, Gaithersburg, MD) followed by 15 min centrifugation at 3200xg. 1:1 Chloroform extraction of the aqueous phase at 3200xg was followed by the addition of 1/40 volume 3 M sodium acetate solution and 2 volumes ethanol. Genomic DNA was precipitated at 16000xg and washed with 70% ethanol before resuspension of the air dried pellet in 10 mM Tris 1mM EDTA pH 7.5. Following resuspension, equal amounts of genomic DNA from the five arsenate-treated animals were pooled together and equal amounts of genomic DNA from the five control animals were pooled together. Five μg of pooled genomic DNA was digested with 400 U MspI (New England Biolabs, Ipswich, MA) in 100 μl at 37 °C for 18 - 24 hrs followed by QIAQuick purification (Qiagen, Valencia, CA). The end of digested DNA was filled in and an adenine was added to the 3’ end of the DNA fragments according to the Illumina standard end repair and add_A protocol (Illumina, San Diego, CA). Pre-annealed forked Illumina adaptors containing 5’-methyl-cytosine instead of cytosine was ligated to both ends of DNA fragments using standard Illumina adaptor ligation protocol (Illumina). Ligated fragments were then separated by 2% agarose gel (Sigma-Aldrich). Two size ranges, 150-175 bp and 175-225 bp (includes adaptor length), were selected and cut from the gel. DNA from gel slices were purified using Qiagen Gel extraction kit (Qiagen). The purified DNA was treated with EpiTect Bisulfite kit (Qiagen) with modification. The bisulfite conversion time was extended to approximately 14 hrs by adding 3 cycles of denaturation at 95 °C for 5 min followed by incubation at 60 °C for 180 min. The bisulfite-converted DNA was purified using the EpiTect Bisulfite kit and protocol for DNA isolated from formaldehyde-fixed, paraffin-embedded tissue samples with modification. The desulfonation buffer was added to the spin column and incubated for 20 min instead of 15 min at room temperature. The bisulfite-treated DNA was purified a second time with MinElute PCR purification kit (Qiagen) and eluted with 15 μl EB buffer. The bisulfite-treated DNA fragments were amplified using polymerase chain reaction (PCR) and the following reaction: 15 μl of eluted DNA, 5 pmol of Illumina PE PCR primers 1.0 and 2.0, 62.5 nM of each dNTP, and 2.5 U of Pfu Turbo Cx hotstart DNA polymerase (Stratagene Products, Agilent, La Jolla, CA) in a total 50 μl volume. The amplification conditions were as follows: 5 min at 95 °C, 30 sec at 98 °C then 6X (10 sec at 98 °C, 30 sec at 65 °C, 30 sec at 72 °C) followed by 5 min at 72 °C. The PCR reaction was purified by MinElute PCR purification Kit (Qiagen) and final reduced representation bisulfite library was eluted in 15 μl EB. The concentration of final library was measured using the Agilent 2100 Bioanalyzer (Palo Alto, CA). The library was sequenced on Illumina GA sequencing instrument according to standard Illumina cluster generation and sequencing protocols.

text: Mus musculus

text: Mice exposed for 12 weeks to 50ppm arsenate


status: PUBLIC

characteristic: External Id

text: Axtell, Biology, Pennsylvania State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 330201030313112312 (for all 4 srf files)

tag: attribute

characteristic: barcode

text: Ppdcl4 knockout mutant

characteristic: genotype

text: Physcomitrium patens

characteristic: organism

text: protonemata

text: protonemata

characteristic: tissue

text: Protonemata dcl4

characteristic: title


text: live

text: Generic

text: 330201030313112312 (for single srf file)

text: wild-type

text: Physcomitrium patens

text: protonemata

text: protonemata

text: Protonemata WT


Human Subject 1

text: BC Cancer Agency Michael Smith Genome Sciences Centre

text: live

text: Generic

text: US National Disease Research Interchange

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Macrodissection

characteristic: collection method

text: Human Subject 1

characteristic: description

text: Renal Cell Carcinoma

characteristic: disease

characteristic: donor age

text: Caucasian

characteristic: donor ethnicity

text: Disease

characteristic: donor health status

text: NDRI #59026

characteristic: donor id

text: male

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Brain - Frontal Cortex Gray Matter

characteristic: tissue type

text: Generic sample from Homo sapiens


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: embryonic stem cells

characteristic: cell type

text: Mus musculus

text: Embyonic stem cells

characteristic: strain


text: Broad Institute

text: live

text: Generic

text: fibroblasts

text: Mus musculus

characteristic: organism

text: Mouse Lung Fibroblasts

text: lung

characteristic: tissue

characteristic: title


text: Broad Institute

text: live

text: Generic

text: neuronal precursor cells

text: Mus musculus

text: Neural progenitor cells


text: Sam Gu, Molecular Biology and Biochemistry, Rutgers University

text: live

text: Generic

text: normal

characteristic: diagnosis

text: Homo sapiens

text: normal cervix

text: normal cervix


text: live

text: Generic

text: squamous cell carcinoma

text: Homo sapiens

text: cervical cancer

text: tumor


text: live

text: Generic

text: adenosquamous cell carcinoma

text: Homo sapiens

text: cervical cancer

text: tumor


text: live

text: Generic

text: adenocarcinoma

text: Homo sapiens

text: cervical cancer

text: tumor


text: Signaling and Functional Genomics, German Cancer Research Center (DKFZ)

text: live

text: Generic

characteristic: cell line

text: Drosophila melanogaster

text: D.Mel-2 cell line


text: Max Planck Institute for Developmental Biology

text: live

text: Generic

text: influorescence

text: AP2 custom antibody raised against the C-terminus of AP2 amino acids 289-432 (right after the second AP2 DNA binding domain until the stop codon) produced in the lab of Prof. Xuemei Chen, UC Riverside.

characteristic: chip antibody

characteristic: ecotype

text: Arabidopsis thaliana

text: influorescence


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: influorescence

text: Arabidopsis thaliana

text: influorescence

text: Col-0 SALK_071140


Salivary microbiome

text: Geneva University Hospitals

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: oral metagenome

text: Study of inter- and intra-individual variations in the salivary microbiota


Sample 1

text: University of Edinburgh

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Drosophila melanogaster


text: Jiming Jiang, UW-Madison

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: antibody

text: Oryza sativa


text: BME, Boston University

text: live

text: Generic

characteristic: SRA accession

characteristic: age

text: neurons from prefrontal cortex

characteristic: cell type

text: Homo sapiens

text: NeuN+

characteristic: population

text: prefrontal cortex

text: 0.5 yr old H3K4me3_NeuN+_rep1 #1


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

characteristic: organism

text: NeuN+

text: prefrontal cortex

text: 0.58 yr old H3K4me3_NeuN+_rep1 #2

characteristic: title


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

characteristic: chip antibody

text: Homo sapiens

text: NeuN+

text: prefrontal cortex

text: 0.75 yr old H3K4me3_NeuN+_rep1 #3


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

text: NeuN+

text: prefrontal cortex

text: 1.3 yr old H3K4me3_NeuN+_rep1 #4


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

text: NeuN+

text: prefrontal cortex

text: 2.8 yr old H3K4me3_NeuN+_rep1 #5


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

text: NeuN+

text: prefrontal cortex

text: 4.71 yr old H3K4me3_NeuN+_rep1 #6


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

text: NeuN+

text: prefrontal cortex

text: 8.78 yr old H3K4me3_NeuN+_rep1 #7


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

text: NeuN+

text: prefrontal cortex

text: 13.99 yr old H3K4me3_NeuN+_rep1 #8


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

text: NeuN+

text: prefrontal cortex

text: 68 yr old H3K4me3_NeuN+_rep1 #9


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

text: NeuN+

text: prefrontal cortex

text: 69 yr old H3K4me3_NeuN+_rep1 #10


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

text: NeuN+

text: prefrontal cortex

text: 69 yr old H3K4me3_NeuN+_rep1 #11.1


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

text: NeuN+

text: prefrontal cortex

text: 69 yr old H3K4me3_NeuN+_rep2 #11.2


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

text: NeuN-

text: prefrontal cortex

text: 4.71 yr old H3K4me3_NeuN-_rep1 #6n


text: BME, Boston University

text: live

text: Generic

text: neurons from prefrontal cortex

text: Homo sapiens

text: NeuN-

text: prefrontal cortex

text: 69 yr old H3K4me3_NeuN-_rep1 #11n


text: Neurology, Mount Sinai School of Medicine

text: live

text: Generic

text: 129SV embryonic stem cells

text: Mus musculus

characteristic: passages

text: Embyonic stem cells


characteristic: External Id

text: live

text: Generic

text: 129SV embryonic stem cells

text: IgG

text: Mus musculus

text: Embyonic stem cells


characteristic: INSDC center name

text: live

text: Generic

text: 129SV embryonic stem cells

text: Mus musculus

text: Embyonic stem cells


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: 3T3-L1 pre-adipocytes and adipocytes

text: Mus musculus

text: 3T3-L1, Whole Cell Extract (input control)


text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: 3T3-L1 pre-adipocytes

text: Abcam, Cat# ab8580, Lot# 376637

characteristic: chip epitope

text: Mus musculus


text: Broad Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 3T3-L1 pre-adipocytes

text: Abcam, Cat# ab7766, Lot# 56293

text: Mus musculus


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 3T3-L1 pre-adipocytes

text: Abcam, Cat# ab8895, Lot# 268176

text: Mus musculus


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: 3T3-L1 pre-adipocytes

text: Abcam, Cat# ab4729, Lot# 31456

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 pre-adipocytes

text: Upstate, Cat# 07-449, Lot# DAM1387952

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 pre-adipocytes

text: Abcam, Cat# ab9050, Lot# 136353

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 pre-adipocytes

text: Upstate, Cat# 07-729, Lot# 1350637

text: CTCF

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 adipocytes

text: Abcam, Cat# ab8580, Lot# 376637

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 adipocytes

text: Abcam, Cat# ab7766, Lot# 56293

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 adipocytes

text: Abcam, Cat# ab8895, Lot# 268176

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 adipocytes

text: Abcam, Cat# ab4729, Lot# 31456

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 adipocytes

text: Upstate, Cat# 07-449, Lot# DAM1387952

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 adipocytes

text: Abcam, Cat# ab9050, Lot# 136353

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 adipocytes

text: Upstate, Cat# 07-729, Lot# 1350637

text: CTCF

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 adipocytes

text: SCBT, Cat# SC-7196X, Lot# A0380

text: PPARG (H-100)

text: Mus musculus


text: Broad Institute

text: live

text: Generic

text: 3T3-L1 adipocytes

text: Call Signaling Technologies, Cat# 2443, Lot# 5/29/2007

text: PPARG (81B1)

text: Mus musculus


text: National Institute on Aging

text: live

text: Generic

text: Homo sapiens

text: SmlRNA Lung1


text: National Institute on Aging

text: live

text: Generic

text: Homo sapiens


Human Subject 2

text: live

text: Generic

text: Québec Suicide Brain Bank

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Human Subject 2

characteristic: description

characteristic: donor age

text: Human Subject 2

characteristic: donor id

text: male

characteristic: donor sex

text: Homo sapiens

text: Brain - Frontal cortex

characteristic: tissue type

text: Generic sample from Homo sapiens


characteristic: External Id

text: Karolinska Institute

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: SOLiD RNA-seq A431

characteristic: title


text: Karolinska Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: SOLiD RNA-seq U251


text: Karolinska Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: SOLiD RNA-seq U2-OS


text: Washington University, Genome Sequencing Center

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Sample Type : pooled dna

text: Felis catus

text: Generic sample from Felis catus


text: live

text: Generic

characteristic: SRA accession

text: Felis catus

text: female

characteristic: sex

text: Felis catus


text: Bioinformatics, BGI-sz

text: live

text: Generic

text: human peripheral blood mononuclear cells

characteristic: cell type

text: Homo sapiens

text: PBMC


text: Broad Institute

text: live

text: Generic

text: Adipose stromal cell (ASC) pre-adipocytes and adipocytes

text: Homo sapiens

text: hASC, Whole Cell Extract (input control)


text: Broad Institute

text: live

text: Generic

text: Adipose stromal cell (ASC) pre-adipocyte

text: Abcam, Cat# ab8050, Lot# 331024

characteristic: chip antibody

characteristic: chip epitope

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Abcam, Cat# ab7766, Lot# 56293

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Abcam, Cat# ab8895, Lot# 383111

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Abcam, Cat# ab4729, Lot# 31456

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Upstate, Cat# 07-449, Lot# DAM1387952

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Abcam, Cat# ab9050, Lot# 136353

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Upstate, Cat# 07-729, Lot# 1350637

text: CTCF

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Adipose stromal cell (ASC) adipocyte

text: Upstate, Cat# 07-729, Lot# 1350637

text: CTCF

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Adipose stromal cell (ASC) adipocyte

text: Abcam, Cat# ab8050, Lot# 331024

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Adipose stromal cell (ASC) adipocyte

text: Abcam, Cat# ab7766, Lot# 56293

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Adipose stromal cell (ASC) adipocyte

text: Abcam, Cat# ab8895, Lot# 383111

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Adipose stromal cell (ASC) adipocyte

text: Abcam, Cat# ab4729, Lot# 31456

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Adipose stromal cell (ASC) adipocyte

text: Upstate, Cat# 07-449, Lot# DAM1387952

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Adipose stromal cell (ASC) adipocyte

text: Abcam, Cat# ab9050, Lot# 136353

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Adipose stromal cell (ASC) adipocyte

text: SCBT, Cat# SC-7196X, Lot# A0380

text: PPARG (H-100)

text: Homo sapiens

text: hASC, ChIP


text: Broad Institute

text: live

text: Generic

text: Adipose stromal cell (ASC) adipocyte

text: Cell Signaling Technologies, Cat# 2443, Lot# 5/29/2007

text: PPARG (81B1)

text: Homo sapiens

text: hASC, ChIP


Hydra vulgaris AEP

text: University of Kiel

text: live

text: Generic

text: Hydra vulgaris

text: Hydra vulgaris AEP (strain AEP)


text: live

text: Generic

text: Sample Type : pooled dna

characteristic: description

text: Felis catus

text: Generic sample from Felis catus


text: Axtell, Biology, Pennsylvania State University

text: live

text: Generic

text: Flowering tissues

characteristic: organ

text: Arabidopsis lyrata

text: flowering tissues

text: smallRNA_Flowers 1


characteristic: External Id

text: live

text: Generic

text: Flowering tissues

text: Arabidopsis lyrata

text: flowering tissues

text: smallRNA_Flowers 2


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: organism

characteristic: strain

text: Generic sample from Dehalogenimonas lykanthroporepellens BL-DC-9


text: National Institute on Aging

characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: Normal Heart

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Parageobacillus thermoglucosidasius C56-YS93

text: Generic sample from Geobacillus thermoglucosidasius C56-YS93


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Haloterrigena turkmenica DSM 5511

text: Haloterrigena turkmenica DSM 5511

text: DSM 5511

text: Generic sample from Haloterrigena turkmenica DSM 5511


phyllosphere fresh spinach microbiome

text: Virginia tech

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Spinach grown under conventional agricultural practices was utilized. Nucleic acids were isolated from fresh spinach leaves within two hours after harvesting.

text: metagenome

text: pyrosequencing of 16S rRNA gene amplicons of phylloepiphytic bacteria of fresh spinach


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

characteristic: SRA accession

text: Escherichia coli 1827-70

text: E. coli 1827-70


text: Stanford University

text: live

text: Generic

text: Saccharomyces cerevisiae CAT-1

text: Diploid genome sequence of the industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1


name: phyllosphere of packaged spinach (day1/4C)

text: Virginia tech

text: live

text: Generic

text: Fresh spinach was harvested and packaged to mimic minimally processing. Spinach was held at 4C for 1 day. Nucleic acids from spinach phyllosphere were isolated and the V4 hypervariable region of the 16S rRNA gene was amplified using RDP primers and analyzed using RDP pyrosequencing pipeline.

text: metagenome

text: pyrosequencing of 16S rRNA gene amplicons of phylloepiphytic bacteria of packaged spinach (day1/4C)


name: phyllosphere of packaged spinach (day15/4C)

text: Virginia tech

text: live

text: Generic

text: Fresh spinach was harvested and packaged to mimic minimally processing. Spinach was held at 4C for 15 days. Nucleic acids from spinach phyllosphere were isolated and the V4 hypervariable region of the 16S rRNA gene was amplified using RDP primers and analyzed using RDP pyrosequencing pipeline.

text: metagenome

text: pyrosequencing of 16S rRNA gene amplicons of phylloepiphytic bacteria of packaged spinach (day15/4C)


name: phyllosphere of packaged spinach (day15/10C)

text: Virginia tech

text: live

text: Generic

text: Fresh spinach was harvested and packaged to mimic minimally processing. Spinach was held at 10C for 15 days to mimic temperature abuse, which can occur during retail conditions. Nucleic acids from spinach phyllosphere were isolated and the V4 hypervariable region of the 16S rRNA gene was amplified using RDP primers and analyzed using RDP pyrosequencing pipeline.

text: metagenome

text: pyrosequencing of 16S rRNA gene amplicons of phylloepiphytic bacteria of packaged spinach (day15/10C)


text: live

text: Generic

text: Escherichia coli OK1180

text: E. coli 1180


text: live

text: Generic

text: Escherichia coli OK1357

text: E. coli OK1357


text: live

text: Generic

text: Escherichia coli 3431

text: E. coli 3431


text: live

text: Generic

text: Escherichia coli EPECa14

text: E. coli EPECa14


text: live

text: Generic

text: Escherichia coli LT-68

text: E. coli LT-68


text: live

text: Generic

text: Escherichia coli E128010

text: E. coli E128010


text: live

text: Generic

text: Escherichia coli 2362-75

text: E. coli 2362-75


text: live

text: Generic

text: Escherichia coli RN587/1

text: E. coli RN587/1


Hydra oligactis

text: University of Kiel

text: live

text: Generic

text: Hydra oligactis

text: Hydra oligactis (strain Z*rich)


Hydra viridissima

text: University of Kiel

text: live

text: Generic

text: Hydra viridissima

text: Hydra viridissima (strain APO-A99)


Aurelia aurita (strain Kiel)

text: University of Kiel

text: live

text: Generic

text: Aurelia aurita

text: Aurelia aurita (strain Kiel)


Aurelia aurita (strain Roscoff)

text: University of Kiel

text: live

text: Generic

text: Aurelia aurita

text: Aurelia aurita (strain Roscoff)


text: Molecular Biology, Radboud University

text: live

text: Generic

text: SL33 against TBP

characteristic: antibody

characteristic: development stage

text: Xenopus tropicalis

text: whole embryo


text: Lawrence Berkeley National Lab

text: live

text: Generic

text: Mus musculus

text: cells

characteristic: sample type

text: Cells isolated from the spleen of leukemic blasts-injected mice, input

text: spleen

characteristic: tissue


text: Lawrence Berkeley National Lab

text: live

text: Generic

text: Active Motif

characteristic: antibody vendor

text: Mus musculus

text: cells

text: Cells isolated from the spleen of leukemic blasts-injected mice, H3K4me3 ChIP

text: spleen


characteristic: External Id

text: Lawrence Berkeley National Lab

text: live

text: Generic

text: Mus musculus

text: tissue

text: Spleen FFPE sections of leukemic blasts-injected mice, input

text: spleen


text: Lawrence Berkeley National Lab

text: live

text: Generic

text: Active Motif

text: Mus musculus

characteristic: organism

text: tissue

text: Spleen FFPE sections of leukemic blasts-injected mice, H3K4me3 ChIP

text: spleen


text: Bird Lab, WTCCB, The University of Edinburgh

text: live

text: Generic

text: pooled: 24,26 and 61

characteristic: age

text: CXXC Affinity Purifcation (CAP)-seq (recombinant mouse CXXC domain)

characteristic: chip antibody/mbd affinity column

text: Homo sapiens

text: Sperm

text: Sperm


characteristic: INSDC center name

text: live

text: Generic

text: pooled: 24,26 and 61

text: Homo sapiens

text: Blood

text: Blood

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: pooled: 41,50 and 54

text: Homo sapiens

text: Cerebellum

text: Cerebellum


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 30 weeks

text: Mus musculus

text: Sperm

characteristic: strain

text: Sperm


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 30 weeks

text: Mus musculus

text: Blood

text: Blood


text: live

text: Generic

text: 30 weeks

text: Mus musculus

text: Cerebellum

text: Cerebellum


text: live

text: Generic

text: pooled: 24,26 and 61

text: MBD Affinity Purifcation (MAP)-seq (recombinant human MBD domain)

text: Homo sapiens

text: Sperm

text: Sperm


text: live

text: Generic

text: pooled: 24,26 and 61

text: Homo sapiens

text: Blood

text: Blood


text: live

text: Generic

text: pooled: age: unknown

text: Homo sapiens

text: Blood

text: Blood


text: live

text: Generic

text: pooled: 41,50 and 54

text: Homo sapiens

text: Cerebellum

text: Cerebellum


text: live

text: Generic

text: pooled: 44,49 and 51

text: Homo sapiens

text: Cerebellum

text: Cerebellum


text: live

text: Generic

text: 30 weeks

text: Mus musculus

text: Sperm

text: Sperm


text: live

text: Generic

text: 30 weeks

text: Mus musculus

text: Blood

text: Blood


text: live

text: Generic

text: 15 weeks

text: Mus musculus

text: Blood

text: Blood


text: live

text: Generic

text: 15 weeks

text: Mus musculus

text: Cerebellum

text: Cerebellum


text: live

text: Generic

text: Homo sapiens

text: Colon Mucosa

text: Colon Mucosa


text: live

text: Generic

text: Homo sapiens

text: Colorectal Tumour

text: Colorectal Tumour


text: live

text: Generic

text: Shef 4 cells

characteristic: cell line

text: ES cells

characteristic: cell type

text: anti-H3K4me3 (ab8580; Abcam)

text: Homo sapiens

text: ES cells


text: live

text: Generic

text: Shef 4 cells

text: ES cells

text: anti-RNA Polymerase II (ab817; Abcam)

text: Homo sapiens

text: ES cells


text: live

text: Generic

text: E14 TG2a

text: ES cells

text: anti-H3K4me3 (ab8580; Abcam)

text: Mus musculus

text: ES cells


text: live

text: Generic

text: E14 TG2a

text: ES cells

text: anti-RNA Polymerase II (ab817; Abcam)

text: Mus musculus

text: ES cells


text: Cold spring harbor laboratory

text: live

text: Generic

characteristic: developmental stage

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: fetal liver

text: liver

characteristic: tissue

text: E18.5 wild type LIVER small RNA


characteristic: External Id

text: Cold spring harbor laboratory

text: live

text: Generic

text: Mus musculus

characteristic: organism

text: fetal liver

text: liver

text: E18.5 Ago2 catalytically inactive LIVER small RNA


text: Life Technologies

characteristic: INSDC center name

text: live

text: Generic

text: white

text: MTLa/MTLa

characteristic: isolate

text: Candida albicans

text: poly(A) RNA selection

characteristic: rna preparation

text: Candida albicans white cells


text: Life Technologies

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: opaque

text: MTLa/MTLa

text: Candida albicans

text: poly(A) RNA selection

text: Candida albicans opaque cells

characteristic: title


text: National Institute on Aging

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens


text: National Institute on Aging

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Homo sapiens

text: Orbital Gyrus1


text: National Institute on Aging

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: Orbital Gyrus2


text: Baylor College of Medicine

text: live

text: Generic

text: CS flies were reared at room temperature (23-24C) for collection. Approximately 30 third-instar wandering larva were picked. Whole body samples were homogenized in 1ml of Trizol (Invitrogen, Carlsbad, California, USA) per 50-100 mg of tissue using a glass-Teflon homogenizer. RNA was purified according to the suggested manufacturer's protocol (Invitrogen). RNA was sequenced on the Illumina GA II instrument for 75bp paired-end reads.

characteristic: description

text: Drosophila melanogaster

text: Third instar wandering larva RNA-Seq


Larva

text: Baylor College of Medicine

text: live

text: Generic

text: CS flies were reared at room temperature (23-24C) for collection. Separate collections of larva at 48, 72, and 96 hours were made. Whole body samples were homogenized in 1ml of Trizol (Invitrogen, Carlsbad, California, USA) per 50-100 mg of tissue using a glass-Teflon homogenizer. RNA was purified according to the suggested manufacturer's protocol (Invitrogen). RNA was mixed in equimolar amounts and sequenced on the Illumina GA II instrument for 75bp paired-end reads.

text: Drosophila melanogaster

text: Larva mixed age 48, 72, 96 hours RNA-Seq


text: Baylor College of Medicine

text: live

text: Generic

text: CS flies were reared at room temperature (23-24C) for collection. Third-instar wandering larva were picked into a separate vial. Approximately 30 pupa were collected at 72 hours. Whole body samples were homogenized in 1ml of Trizol (Invitrogen, Carlsbad, California, USA) per 50-100 mg of tissue using a glass-Teflon homogenizer. RNA was purified according to the suggested manufacturer's protocol (Invitrogen). RNA was sequenced on the Illumina GA II instrument for 75bp paired-end reads.

text: Drosophila melanogaster

text: Three day old Pupa RNA-Seq


Pupa

text: Baylor College of Medicine

text: live

text: Generic

text: CS flies were reared at room temperature (23-24C) for collection. Third-instar wandering larva were picked into a separate vial. Separate collections of pupa were made at 1, 2, 3, and 5 days old. Whole body samples were homogenized in 1ml of Trizol (Invitrogen, Carlsbad, California, USA) per 50-100 mg of tissue using a glass-Teflon homogenizer. RNA was purified according to the suggested manufacturer's protocol (Invitrogen). RNA was mixed in equimolar amounts and sequenced on the Illumina GA II instrument for 75bp paired-end reads.

text: Drosophila melanogaster

text: Pupa mixed age 1, 2, 3, 4, 5 day RNA-Seq


text: Baylor College of Medicine

text: live

text: Generic

text: CS flies were reared at room temperature (23-24C) for collection. Young males were collected into a seperate vial and aged 48 hours, approximately 30 were then collected. Whole body samples were homogenized in 1ml of Trizol (Invitrogen, Carlsbad, California, USA) per 50-100 mg of tissue using a glass-Teflon homogenizer. RNA was purified according to the suggested manufacturer's protocol (Invitrogen). RNA was sequenced on the Illumina GA II instrument for 75bp paired-end reads.

text: Drosophila melanogaster

text: Male adults three days old RNA-Seq


text: Baylor College of Medicine

text: live

text: Generic

text: CS flies were reared at room temperature (23-24C) for collection. Virgins were collected into a seperate vial and aged 48 hours, approximately 30 were then collected. Whole body samples were homogenized in 1ml of Trizol (Invitrogen, Carlsbad, California, USA) per 50-100 mg of tissue using a glass-Teflon homogenizer. RNA was purified according to the suggested manufacturer's protocol (Invitrogen). RNA was sequenced on the Illumina GA II instrument for 75bp paired-end reads.

text: Drosophila melanogaster

text: Female adults three days old RNA-Seq


text: Baylor College of Medicine

text: live

text: Generic

text: CS flies were reared at room temperature (23-24C) for collection. Virgins and young males were collected into a seperate vials and aged 48 hours, separate collections were then made. Whole body samples were homogenized in 1ml of Trizol (Invitrogen, Carlsbad, California, USA) per 50-100 mg of tissue using a glass-Teflon homogenizer. RNA was purified according to the suggested manufacturer's protocol (Invitrogen). RNA was mixed in equimolar amounts and sequenced on the Illumina GA II instrument for 75bp paired-end reads.

text: Drosophila melanogaster

text: Adults 17 days old RNA-Seq


AS

text: Yonsei

text: live

text: Generic

text: The aquarance and increase of antimicrobial resistome among microorganisms present in environmental water bodies in South Korea signals the emergence of devastation to environmental system. The treated water released into the water bodies from the waste water treatment plant (WWTP) which are situated on the banks acts as a source for the evolution of antibiotic resistance microorganism. DNA were extracted from these 3 samples (Activated Sludge, Influent, effluent) collected from the WWTP in Seoul using culture independent method and culture dependent method supplemented with antibiotic (Ampicillin, Kanamycin, Tetracycline) concentration in LB broth.

text: wastewater metagenome

text: Titanium - Pyrosequencing detection of Multiple Antibiotic Resistance bacteria from a Municipal Wastewater Treatment Plant in Seoul.


text: University of Texas at Austin

text: live

text: Generic

text: High molecular weight genomic DNA was extracted from a single individual of Panicum halli var filipes, designated FIL2. This extraction was accomplished using the Qiagen DNeasy Plant Mini kit, with leaf tissue initially ground in a liquid nitrogen cooled mortar and pestle and all other steps according to the manufacturers instructions. This individual has been propagated vegetatively to produce large numbers of replicate clones. DNA was shipped to the Institute for Genome Sciences and Policy at Duke University, where it was used to generate a randomly fragmented genomic library using standard Roche protocols. This library has been sequenced using 454 FLX Titanium chemistry at the Duke sequencing facility.

text: Panicum hallii

text: Genomic DNA extracted from Panicum hallii var. filipes


text: University of Texas at Austin

text: live

text: Generic

text: High molecular weight genomic DNA was extracted from a single individual of Panicum halli var hallii, designated HAL2. This extraction was accomplished using the Qiagen DNeasy Plant Mini kit, with leaf tissue initially ground in a liquid nitrogen cooled mortar and pestle and all other steps according to the manufacturers instructions. This individual has been propagated vegetatively to produce large numbers of replicate clones. DNA was delivered to the Genome Sequencing adn Analysis Facility at the University of Texas at Austin, where it was used to generate a randomly fragmented genomic library using standard Roche protocols. This library has been sequenced using 454 FLX Titanium chemistry at the UT sequencing facility.

text: Panicum hallii

text: Genomic DNA extracted from Panicum hallii var. hallii


text: University of Texas at Austin

text: live

text: Generic

text: High molecular weight genomic DNA was extracted from a single individual of Panicum halli var hallii, designated HAL2. This extraction was accomplished using the protocol described at the following link: http://my.jgi.doe.gov/general/protocols/DNA_Isolation_of_Nuclear_DNA_of_Arabidopsis_lyrata.pdf. Leaf tissue initially ground in a liquid nitrogen cooled mortar and pestle, and all other steps were conducted as described in that protocol. This individual has been propagated vegetatively to produce large numbers of replicate clones. DNA was delivered to the Genome Sequencing adn Analysis Facility at the University of Texas at Austin, where it was used to generate a randomly fragmented genomic library using standard Roche protocols. This library has been sequenced using 454 FLX Titanium chemistry at the UT sequencing facility.

text: Panicum hallii


Rye chromosome 1RS DNA

text: Austrian Institute of Technology

text: live

text: Generic

text: Sorted 1RS chromosomes of wheat-rye ditelosomic addition line, derived from rye (Secale cereale L.) cv. ‘Imperial’ in the background of wheat (Triticum aestivum L.) cv. ‘Chinese Spring’ (Driscoll CJ, Sears ER. 1971. Individual addition of the chromosomes of 'Imperial' rye to wheat. Agron Abstr p6).

text: Secale cereale

text: Rye chromosome 1RS


text: University of Birmingham - Centre for Systems Biology

text: live

text: Generic

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa Midlands 1


text: University of North Carolina at Charlotte

text: live

text: Generic

text: Subject 28; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 28; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 28; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 28; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 28; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 29; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 29; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 29; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 29; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 29; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 30; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 30; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 30; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 30; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 30; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 31; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: University of North Carolina at Charlotte

text: live

text: Generic

text: Subject 31; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 31; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 31; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 31; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 32; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 32; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 32; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 32; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 32; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 32; Second choline repletion sample, ~Day 67

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 33; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 33; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 33; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 33; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 33; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 34; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: University of North Carolina at Charlotte

text: live

text: Generic

text: Subject 34; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 34; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 34; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 34; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 34; Second choline repletion sample, ~Day 67

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 36; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 36; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 36; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 36; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 36; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 37; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 37; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 37; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 37; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 37; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 37; Second choline repletion sample, ~Day 67

text: human gut metagenome

text: human gut metagenome


text: University of North Carolina at Charlotte

text: live

text: Generic

text: Subject 38; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 38; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 38; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 38; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 38; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 39; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 39; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 39; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 39; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 39; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 39; Second choline repletion sample, ~Day 67

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 41; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 41; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 41; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 41; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 41; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: University of North Carolina at Charlotte

text: live

text: Generic

text: Subject 42; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 42; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 42; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 42; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 42; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 3; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 3; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 3; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 3; End of choline depletion sample, ~Day 42

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 3; Choline repletion sample, ~Day 52

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 4; First baseline sample, Day 0

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 4; Second baseline sample, Day 10

text: human gut metagenome

text: human gut metagenome


text: live

text: Generic

text: Subject 4; First choline depletion sample, ~Day 21

text: human gut metagenome

text: human gut metagenome


default sample

text: live

text: Generic

text: default human gut metagenome

text: human gut metagenome

text: human gut metagenome


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: batch

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: WA7 stem cells

text: undifferentiated

characteristic: differentiation stage

characteristic: line

text: embrionic stem cell

characteristic: lineage

text: KSR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: female

characteristic: sex

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Harvard University

text: Cell Line

text: I3(eye three) stem cells

text: undifferentiated

text: embrionic stem cell

text: KSR

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: female

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Harvard University

text: Cell Line

text: I3(eye three) stem cells

characteristic: description

text: undifferentiated

text: embrionic stem cell

text: KSR

text: genomic DNA

text: Homo sapiens

text: female

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: batch

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: I3(eye three) stem cells

text: undifferentiated

characteristic: differentiation stage

text: hES I3 TESR

characteristic: line

text: embrionic stem cell

characteristic: lineage

text: TESR

text: genomic DNA

text: Homo sapiens

text: female

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: Harvard University

text: Cell Line

text: I3(eye three) stem cells

text: undifferentiated

text: hES I3 TESR

text: embrionic stem cell

text: TESR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: female

characteristic: sex

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: short term

text: FHCRC

text: Primary Cell

text: CD34 Cultured Cells

characteristic: cell type

text: flow sorted CD34+ cells from cord blood expanded in short term culture

text: cultured CD34_2/20/09

characteristic: donor id

characteristic: markers

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: batch

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: induced pluripotent stem cells 18c

text: IPS cell line 18c

characteristic: description

text: undifferentiated

characteristic: differentiation stage

characteristic: line

text: induced pluripotent cells

text: KSR

text: genomic DNA

text: Homo sapiens

text: female

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: not passaged

text: Islet Cell Resource Center

text: Primary Cell

text: Pancreatic Islets

text: pancreatic islets from a normal donor

text: pancreatic islets normal_3/27/09

text: male

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: not passaged

text: FHCRC

text: Primary Cell

text: CD19 Primary Cells

characteristic: cell type

text: flow sorted CD19+ cells from cord blood

characteristic: donor id

characteristic: markers

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: not passaged

characteristic: SRA accession

text: FHCRC

characteristic: biomaterial provider

text: Primary Cell

text: Mobilized CD34 Primary Cells

text: CD34 cells mobilized into peripheral blood

text: Mobilized CD34_5/28/09

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Shigella flexneri 2a str. 2457T

characteristic: strain

text: Shigella flexneri SF-2457T


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Shigella dysenteriae 1617

text: Shigella dysenteriae 1617


characteristic: INSDC last update

text: live

text: Generic

text: Shigella sonnei 53G

text: Shigella sonnei 53G


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: batch

text: Harvard University

text: Cell Line

characteristic: biomaterial type

text: IPS cell line 15b

characteristic: description

text: undifferentiated

characteristic: differentiation stage

characteristic: line

text: induced pluripotent cells

characteristic: lineage

text: KSR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: female

characteristic: sex

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

text: induced pluripotent stem cells 20b

characteristic: cell type

text: IPS cell line 20b

text: undifferentiated

text: induced pluripotent cells

text: KSR

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: not passaged

text: FHCRC

text: Primary Cell

characteristic: biomaterial type

text: CD34 Primary Cells

text: flow sorted CD34+ cells from cord blood

characteristic: donor id

characteristic: markers

text: genomic DNA

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: batch

text: Harvard University

text: Cell Line

text: IPS cell line 18c

characteristic: description

text: undifferentiated

characteristic: differentiation stage

characteristic: line

text: induced pluripotent cells

characteristic: lineage

text: KSR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: female

characteristic: sex

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: not passaged

characteristic: SRA accession

text: FHCRC

characteristic: biomaterial provider

text: Primary Cell

text: CD19 Primary Cells

characteristic: cell type

text: flow sorted CD19+ cells from cord blood

text: female

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: batch

text: Harvard University

text: Cell Line

characteristic: biomaterial type

text: IPS cell line 18b

characteristic: description

text: undifferentiated

characteristic: differentiation stage

text: induced pluripotent cells

text: KSR

text: genomic DNA

text: Homo sapiens

text: female

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

text: not passaged

text: Islet Cell Resource Center

text: Primary Cell

text: Pancreatic Islets

text: pancreatic islets from a normal donor

text: pancreatic islets normal_0/0/00

characteristic: donor id

text: male

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Harvard University

text: Cell Line

text: IPS cell line 11a

text: undifferentiated

characteristic: line

text: induced pluripotent cells

characteristic: lineage

text: KSR

characteristic: medium

text: genomic DNA

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: MGH Pathology

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: surgery

characteristic: collection method

text: normal adult liver

text: female

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: liver

characteristic: tissue depot

text: liver

characteristic: tissue type

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FHCRC

text: Primary Cell

text: CD15 Primary Cells

characteristic: cell type

text: flow sorted CD15+ cells from cord blood

characteristic: description

characteristic: donor id

text: male

characteristic: markers

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: MGH Pathology

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: surgery

text: normal adult liver

text: male

text: genomic DNA

text: Homo sapiens

text: liver

text: liver

text: Generic sample from Homo sapiens


characteristic: External Id

text: Integrative Genomics and Bioinformatics Core, Salk Institute

text: live

text: Generic

text: macrophage

text: H3K4me1 (Vendor: Abcam, cat# ab8895, lot# 721955)

characteristic: chip antibody

text: H3K4me1 (ab8895)

text: Mus musculus

characteristic: organism

text: thioglycollate-elicited peritoneal macrophages

characteristic: strain


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: resting splenic B cells

text: H3K4me1 (ab8895)

text: Mus musculus

text: resting splenic B cells


text: live

text: Generic

text: PU.1-/- myloid cell

characteristic: cell type

text: H3K4me1 (ab8895)

characteristic: genotype/variation

text: Mus musculus

text: PU.1-/- myloid cell


text: live

text: Generic

text: PUER cells

text: H3K4me1 (ab8895)

text: Mus musculus

text: PUER cells

characteristic: title

characteristic: transgenes


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: PUER cells

text: H3K4me1 (ab8895)

text: Mus musculus

text: PUER cells

text: Tamoxifen, 1h

characteristic: treatment


characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: PUER cells

text: H3K4me1 (ab8895)

text: Mus musculus

text: PUER cells

text: Tamoxifen, 24h


characteristic: External Id

text: live

text: Generic

text: RAW264.7 Macrophage cell line

text: Biotin-tagged LXRb bound to NanoLink Streptavidin Magnetic Microspheres (Vendor: SoluLink, cat# M1002-010, lot# LM041609)

text: Biotin-tagged LXRb/Streptavidin

text: wild-type

text: Mus musculus

text: BirA/BLRP-LXRb RAW264.7 cells

text: BLRP-LXRb-GW-ChIP-Seq

text: LXRb-BLRP, BirA

text: GW3965, 1h


text: live

text: Generic

text: RAW264.7 Macrophage cell line

text: Streptavidin

characteristic: chip antibody

text: Streptavidin (NanoLink Streptavidin Magnetic Microspheres (Vendor: SoluLink, cat# M1002-010, lot# LM041609))

text: wild-type

text: Mus musculus

text: BirA RAW264.7 cells

text: BirA-input-GW-ChIP-Seq

text: BirA

text: GW3965, 1h


text: live

text: Generic

text: macrophage

text: PU.1 (sc-352)

text: PU.1 (Vendor: Santa Cruz, cat# sc-352, lot# F1808)

text: wild-type

text: Mus musculus

characteristic: organism

text: bone marrow-derived macrophages


text: live

text: Generic

text: macrophage

text: PU.1 (sc-352)

text: LXRa/b-/-

text: Mus musculus

text: bone marrow-derived macrophages

characteristic: strain


characteristic: INSDC secondary accession

text: live

text: Generic

text: macrophage

text: H3K4me1 (ab8895)

text: wild-type

text: Mus musculus

text: bone marrow-derived macrophages


text: live

characteristic: INSDC status

text: Generic

text: macrophage

text: H3K4me1 (ab8895)

text: LXRa/b-/-

text: Mus musculus

text: bone marrow-derived macrophages


text: Medicine, University of California, San Diego (UCSD)

text: live

text: Generic

characteristic: NCBI submission model

text: PUER cells

text: Mus musculus

text: PUER cells


text: live

text: Generic

characteristic: NCBI submission package

text: PUER cells

text: Mus musculus

text: PUER cells

text: Tamoxifen, 1h


text: Human Genetics, NCMLS

text: live

text: Generic

text: H129 against p63

characteristic: antibody

text: primary cells

characteristic: cell line

text: keratinocytes

characteristic: cell type

text: Homo sapiens

text: primary keratinocyte

text: epidermis

characteristic: tissue


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

characteristic: batch

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: I3(eye three) stem cells

characteristic: description

text: undifferentiated

characteristic: differentiation stage

text: hES I3 TESR

characteristic: line

text: embrionic stem cell

characteristic: lineage

text: TESR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: female

characteristic: sex

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Harvard University

text: Cell Line

text: WA7 stem cells

text: undifferentiated

text: embrionic stem cell

text: KSR

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: female

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

characteristic: batch

text: Harvard University

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: I3(eye three) stem cells

characteristic: description

text: undifferentiated

characteristic: differentiation stage

text: embrionic stem cell

text: KSR

text: genomic DNA

text: Homo sapiens

text: female

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: Cellular Dynamics

text: Cell Line

text: H1 stem cells from Cellular Dynamics

characteristic: line

text: undifferentiated

characteristic: lineage

text: TESR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


characteristic: External Id

text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: CA

text: Streptococcus pyogenes MGAS10829

characteristic: sample name

characteristic: strain

text: Generic sample from Streptococcus pyogenes MGAS10829

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: FHCRC

characteristic: biomaterial provider

text: Primary Cell

characteristic: biomaterial type

text: CD34 Primary Cells

characteristic: cell type

text: flow sorted CD34 cells from cord blood

characteristic: donor id

characteristic: markers

text: genomic DNA

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: FHCRC

text: Primary Cell

text: CD34 Primary Cells

text: flow sorted CD34 cells from cord blood

characteristic: description

text: genomic DNA

characteristic: molecule

text: Homo sapiens


VirRnaMgCoxMbII

text: San Diego State University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: environmental samples

text: RNA viral metagenome from Coxsackie virus infected mouse brain tissue II


VirRnaMgCoxMbI

text: San Diego State University

characteristic: INSDC center name

text: live

text: Generic

text: environmental samples

text: RNA Viral Metagenome from Coxsackie virus infected mouse brain tissue I

characteristic: title


VirRnaMgMosqCeI

text: San Diego State University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental samples

text: Viral RNA Metagenome from San Diego Culex erythrothorax Mosquitoes


name: Tidal flat populations from dechlorinating enrichments

text: Yonsei University

text: live

text: Generic

characteristic: SRA accession

text: A multipronged approach comprising microcosm studies, Titanium pyrosequencing, 16S rRNA gene clone libraries, and dechlorinator-targeted quantitative real-time PCR (qPCR) characterized reductive dechlorinating activities and populations in tidal flat sediments collected from South Korea’s central west coast near Kangwha. In microcosms established with surface sediments, PCE dechlorination to TCE began within 10 days and 100% of the initial amount of PCE was converted to TCE after 37 days. cis-1,2-dichloroethene (cis-DCE) was observed as dechlorination end product in microcosms containing sediments collected from deeper zones (i.e., 35-40 cm below ground surface). Pyrosequencing of bacterial 16S rRNA genes and 16S rRNA gene-targeted qPCR results revealed Desulfuromonas michiganensis-like populations predominanted in both TCE and cis-DCE producing microcosms. Other abundant groups included Desulfuromonas thiophila and Pelobacter acidigallici-like populations in the surface sediment microcosms, and Desulfovibrio dechloracetivorans and Fusibacter paucivorans-like populations in the deeper sediment microcosms. Dehalococcoides spp. populations were undetected in these sediments before and after incubation with PCE.

text: marine metagenome

text: Increased populations during PCE to TCE or cis-DCE dechlorination


Baltic

text: Lunds University

text: live

text: Generic

text: Baltic seawater with salinity 7 PSU was tranplanted to a salinity of 28 PSU which is the salinity of the connected water mass of Skagerrak. Two sequence libraries were prepared. BAL contains the original inoculum, BAL-T contains the transplant.

text: marine metagenome

text: Salinity transplant experiment on Baltic Sea water and its effects on the bacterial community. High throughput sequencing of the 16S rRNA genes from the libraries BAL and BAL-T.


text: Baylor College of Medicine

text: live

text: Generic

text: CS flies were reared at room temperature (23-24C) for collection. Whole body samples were homogenized in 1ml of Trizol (Invitrogen, Carlsbad, California, USA) per 50-100 mg of tissue using a glass-Teflon homogenizer. RNA was purified according to the suggested manufacturer’s protocol (Invitrogen). Eggs were laid on grape juice plates for 14 hours and then removed and aged for 2 more hours.

text: Drosophila melanogaster

text: Embryo 2-16 hours RNA-Seq 100bp


text: Baylor College of Medicine

text: live

text: Generic

text: CS flies were reared at room temperature (23-24C) for collection. Approximately 30 third-instar wandering larva were picked. Whole body samples were homogenized in 1ml of Trizol (Invitrogen, Carlsbad, California, USA) per 50-100 mg of tissue using a glass-Teflon homogenizer. RNA was purified according to the suggested manufacturer's protocol (Invitrogen). RNA was sequenced on the Illumina GA II instrument for 75bp paired-end reads.

text: Drosophila melanogaster

text: Third instar wandering larva RNA-Seq 100bp


text: Human Microbiome Project Data Access Coordinating Committee

text: live

text: Generic

text: Anonymized stool sample used for benchmarking

text: human metagenome


HMPEvenMC

text: live

text: Generic

text: HMP Even Mock Community sample

text: mixed DNA library

text: synthetic construct


Di-G

text: The Salk Institute for Biological Studies

text: live

text: Generic

text: 44bp single-end reads from the SOLiD platform

text: Arabidopsis thaliana

text: Di-G


ASLB

text: Yonsei

text: live

text: Generic

text: The aquarance and increase of antimicrobial resistome among microorganisms present in environmental water bodies in South Korea signals the emergence of devastation to environmental system. The treated water released into the water bodies from the waste water treatment plant (WWTP) which are situated on the banks acts as a source for the evolution of antibiotic resistance microorganism. DNA were extracted from these 3 samples (Activated Sludge, Influent, effluent) collected from the WWTP in Seoul using culture independent method and culture dependent method supplemented with antibiotic (Ampicillin, Kanamycin, Tetracycline) concentration in LB broth.

text: wastewater metagenome

text: Titanium - Pyrosequencing detection of Multiple Antibiotic Resistance bacteria from a Municipal Wastewater Treatment Plant in Seoul.


ASATK

text: Yonsei

text: live

text: Generic

text: wastewater metagenome


name: Bank vole transcriptome unselected controls

text: Jagiellonian University

text: live

text: Generic

text: 454 reads from a normalized cDNA library prepared from hearts of multiple bank voles from four control (unselected) lines

text: Myodes glareolus

text: Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate: unselected controls


text: NCBI

text: live

text: Generic

text: universal water blank sample for protected datasets

text: unidentified

text: universal water blank sample


text: NCBI

text: live

text: Generic

text: universal buffer blank sample for protected datasets

text: unidentified

text: universal buffer blank sample


text: NCBI

text: live

text: Generic

text: universal buffer blank sample

text: unidentified

text: universal buffer blank sample


text: NCBI

text: live

text: Generic

text: universal water blank sample

text: unidentified

text: universal water blank sample


text: live

text: Generic

text: Arabidopsis thaliana


text: Henikoff, Basic Sciences, Fred Hutchinson Cancer Research Center

text: live

text: Generic

characteristic: cell line

text: Drosophila melanogaster

text: 80mM NaCl soluble pull-down DNA


text: live

text: Generic

text: Drosophila melanogaster

text: single H2Av pull-down DNA


text: live

text: Generic

text: Drosophila melanogaster

text: Heterotypic H2Av (H2A/H2Av) pull-down DNA


text: live

text: Generic

text: Drosophila melanogaster

text: Heterotypic H2Av input


text: live

text: Generic

text: Drosophila melanogaster

text: Homotypic H2Av input


text: live

text: Generic

text: Drosophila melanogaster

text: Homotypic H2Av (H2Av/H2Av) pull-down DNA


text: live

text: Generic

text: Et-0 Arabidopsis thaliana genome sequence

text: Arabidopsis thaliana


text: OSU

text: live

text: Generic

text: mammosphere-derived epithelial cells (MDECs)

characteristic: cell type

text: RNA Polymerase II (Santa Cruz, sc-899X, 10 ng per IP)

characteristic: chip antibody

text: Homo sapiens

text: reduction mammoplasty patient #67

characteristic: patient

characteristic: protocol

text: mammosphere-derived epithelial cells from #67 patient

text: MDEC_E2-preexposed_rep1 [ChIP-seq]


characteristic: External Id

text: OSU

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: reduction mammoplasty patient #67

text: DMSO-preexposed

text: MDEC_DMSO-preexposed_rep1 [ChIP-seq]


text: OSU

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: reduction mammoplasty patient #68

text: DMSO-preexposed

text: mammosphere-derived epithelial cells from #68 patient

text: MDEC_DMSO-preexposed_rep2 [ChIP-seq]


text: OSU

text: live

text: Generic

text: Homo sapiens

text: reduction mammoplasty patient #68

text: MDEC_E2-preexposed_rep2 [ChIP-seq]


text: OSU

text: live

text: Generic

text: MCF-7 breast cancer cell line

text: Homo sapiens

text: DMSO stimulation

text: ATCC MCF-7 cells

text: MCF-7_DMSO_4 hr [ChIP-seq]


text: OSU

text: live

text: Generic

text: MCF-7 breast cancer cell line

text: Homo sapiens

text: E2 stimulation

text: ATCC MCF-7 cells

text: MCF-7_E2_4 hr [ChIP-seq]


text: Center for Human and Clinical Genetics, Leiden University Medical Center

text: live

text: Generic

text: Mouse C2C12 myoblasts

text: Mus musculus

text: SAGE

text: Mouse C2C12 myoblasts

text: T0 (days)

characteristic: time


characteristic: INSDC last update

text: live

text: Generic

text: Mouse C2C12 myoblasts

text: Mus musculus

text: SAGE

text: Mouse C2C12 myoblasts

text: T9 (days)


characteristic: INSDC secondary accession

text: live

text: Generic

text: Mouse C2C12 myoblasts

text: Mus musculus

text: CAGE

text: Mouse C2C12 myoblasts

text: T0 (days)


text: live

characteristic: INSDC status

text: Generic

text: Mouse C2C12 myoblasts

text: Mus musculus

text: CAGE

text: Mouse C2C12 myoblasts

text: T9 (days)


DE A2 MeDIP

text: Max-Planck-Institute for Molecular Genetics

characteristic: INSDC center name

text: live

text: Generic

text: MeDIP treated definitive endoderm A2

characteristic: description

text: Homo sapiens

text: Definitive endoderm, MeDIP A2


DE A3 MeDIP

text: live

text: Generic

characteristic: NCBI submission model

text: MeDIP treated definitive endoderm A3

text: Homo sapiens

text: Definitive endoderm, MeDIP A3

characteristic: title


DE A4 MeDIP

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: MeDIP treated definitive endoderm A4

text: Homo sapiens

text: Definitive endoderm, MeDIP A4


DE A3 Input

text: live

text: Generic

text: Input treated definitive endoderm A3

text: Homo sapiens

text: Definitive endoderm, Input A3


text: Obstetrics and Gynecology, Wayne State University

text: live

text: Generic

text: Homo sapiens

text: spermatozoa

text: Spermatozoa

characteristic: tissue


text: NCBI

text: live

text: Generic

text: Positive control for quality assurance. A description of the positive control in use will be provided by the sequencing run center

text: unidentified

text: universal positive control


text: Institute for Cell and Molecular Biology, University of Texas at Austin

text: live

text: Generic

characteristic: antibody

characteristic: antibody catalog number

text: Santa Cruz Biotech

characteristic: antibody manufacturer

text: Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM06990

characteristic: biomaterial provider

characteristic: cell line

text: Epstein-Barr Virus transformed lymphoblastoid

characteristic: cell type

text: Homo sapiens

text: Peripheral vein


characteristic: External Id

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: Peripheral vein


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Positive control for quality assurance of protected datasets. A description of the positive control in use will be provided by the sequencing run center

text: unidentified

text: universal positive control


text: Washington University Center for Genome Sciences

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: human gut metagenome

text: Generic sample from human gut metagenome


Bat

text: Stanford University

text: live

text: Generic

characteristic: NCBI submission package

text: viral metagenome

text: Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses

characteristic: title


NMVA

text: University of Georgia

text: live

text: Generic

characteristic: SRA accession

text: Arachis hypogaea

text: NMVA

characteristic: strain

text: Seqencing of Arachis hypogaea, cv NMVA


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Rationally-engineered strain for the production of L-tyrosine genotype: E. coli K12 delta(pheA) delta(tyrR) lacZ::PLtetO-1-tyrAfbraroGfbr tyrR::PLtetO-1-tyrAfbraroGfbr

characteristic: description

text: Escherichia coli

text: parental strain P2


text: University of Georgia

text: live

text: Generic

text: Arachis hypogaea

text: Arachis hypogaea NC12c


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Transcriptional engineering mutant capable of L-tyrosine overproduction (isolated from an rpoD library) genotype: E. coli K12 delta(pheA) delta(tyrR) lacZ::PLtetO-1-tyrAfbraroGfbr tyrR::PLtetO-1-tyrAfbraroGfbr pHACM-rpoD3

text: Escherichia coli

text: strain rpoD3


text: University of Georgia

text: live

text: Generic

text: Arachis duranensis

text: Dur2 (Grif 15036)

text: Arachis duranesis, DUR2 (Grif 15036)


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Transcriptional engineering mutant capable of L-tyrosine overproduction (isolated from an rpoA library) genotype: E. coli K12 delta(pheA) delta(tyrR) lacZ::PLtetO-1-tyrAfbraroGfbr tyrR::PLtetO-1-tyrAfbraroGfbr pHACM-rpoA14

text: Escherichia coli

text: strain rpoA14


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Transcriptional engineering mutant capable of L-tyrosine overproduction (isolated from an rpoA library) genotype: E. coli K12 delta(pheA) delta(tyrR) lacZ::PLtetO-1-tyrAfbraroGfbr tyrR::PLtetO-1-tyrAfbraroGfbr pHACM-rpoA27

text: Escherichia coli

text: strain rpoA27


text: University of Georgia

text: live

text: Generic

text: Arachis duranensis

text: dur25 (PI 475887)

text: Arachis durenensis DUR25 (PI 475887)


Tifrunner

text: University of Georgia

text: live

text: Generic

text: Arachis hypogaea

text: Tifrunner

text: Arachis hypogaea cv Tifrunner


INN

text: Yonsei

text: live

text: Generic

text: The aquarance and increase of antimicrobial resistome among microorganisms present in environmental water bodies in South Korea signals the emergence of devastation to environmental system. The treated water released into the water bodies from the waste water treatment plant (WWTP) which are situated on the banks acts as a source for the evolution of antibiotic resistance microorganism. DNA were extracted from these 3 samples (Activated Sludge, Influent, effluent) collected from the WWTP in Seoul using culture independent method and culture dependent method supplemented with antibiotic (Ampicillin, Kanamycin, Tetracycline) concentration in LB broth

text: wastewater metagenome

text: Titanium - Pyrosequencing detection of Multiple Antibiotic Resistance bacteria from a Municipal Wastewater Treatment Plant in Seoul.


INNLB

text: Yonsei

text: live

text: Generic

text: The aquarance and increase of antimicrobial resistome among microorganisms present in environmental water bodies in South Korea signals the emergence of devastation to environmental system. The treated water released into the water bodies from the waste water treatment plant (WWTP) which are situated on the banks acts as a source for the evolution of antibiotic resistance microorganism. DNA were extracted from these 3 samples (Activated Sludge, Influent, effluent) collected from the WWTP in Seoul using culture independent method and culture dependent method supplemented with antibiotic (Ampicillin, Kanamycin, Tetracycline) concentration in LB broth.

text: wastewater metagenome

text: Titanium - Pyrosequencing detection of Multiple Antibiotic Resistance bacteria from a Municipal Wastewater Treatment Plant in Seoul


INNATK

text: Yonsei

text: live

text: Generic

text: wastewater metagenome


EFF

text: Yonsei

text: live

text: Generic

text: wastewater metagenome


EFFLB

text: Yonsei

text: live

text: Generic

text: wastewater metagenome


EFFATK

text: Yonsei

text: live

text: Generic

text: wastewater metagenome


Dsim sterile line

text: Beijing Institute of Genomics Chinese Acad of Sci - Key Lab

text: live

text: Generic

text: Drosophila simulans

text: Transcriptome of Drosophia simulans testis age 3-4day


Rmi 454 Cot DNA

text: Centre for Comparative Genomics

text: live

text: Generic

text: Approximately 2 g larvae from the f8 generation of the Deutch strain were used by Amplicon Express Inc. (Pullman, WA) to isolate genomic DNA

text: Rhipicephalus microplus

text: Rhipicephalus microplus Deutch strain


Bank vole transcriptome selection lines

text: Jagiellonian University

text: live

text: Generic

text: Myodes glareolus

text: Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate: unselected controls


Dsim fertile line

text: live

text: Generic

text: Drosophila simulans

text: Transcriptome of Dsim fertile line testis


hESCs C1 MeDIP

text: Max-Planck-Institute for Molecular Genetics

text: live

text: Generic

text: MeDIP treated hESCs C1

text: Homo sapiens

text: hESCs, MeDIP C1


hESCs C2 MeDIP

text: live

text: Generic

text: MeDIP treated hESCs C2

text: Homo sapiens

text: hESCs, MeDIP C2


hESCs C3 MeDIP

text: live

text: Generic

text: MeDIP treated hESCs C3

text: Homo sapiens

text: hESCs, MeDIP C3


hESCs C3 Input

text: live

text: Generic

text: Input treated hESCs C3

text: Homo sapiens

text: hESCs, Input C3


text: Giraldez Lab, Genetics, Yale University

text: live

text: Generic

text: 48h post-fertilization embryo

characteristic: developmental stage

text: MZdicer hu715/hu715

characteristic: genotype

text: Danio rerio

text: 48hpf embryo, Mzdicer mutant

text: mixed AB, TU, TL,TLF background

text: MZdicer mutant1 hu715


text: Giraldez Lab, Genetics, Yale University

text: live

text: Generic

text: 48h post-fertilization embryo

text: wild type

text: Danio rerio

text: 48hpf embryo, WT

text: mixed AB, TU, TL,TLF background


text: Giraldez Lab, Genetics, Yale University

text: live

text: Generic

text: 48h post-fertilization embryo

text: MZdicer hu896/hu896

text: Danio rerio

text: 48hpf embryo, Mzdicer mutant

text: mixed AB, TU, TL,TLF background

text: MZdicer mutant2 hu896


text: Giraldez Lab, Genetics, Yale University

text: live

text: Generic

text: 48h post-fertilization embryo

text: MZago2 Δ90/Δ90

text: Danio rerio

text: 48hpf embryo, MZago2 mutant

text: mixed AB, TU, TL,TLF background

text: MZago2 mutant YΔ90


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

characteristic: gender

text: fluorescence activated cell sorting

characteristic: isolation

text: Mus musculus

text: bone marrow

characteristic: source

text: Mouse Pro B cells, Bone Marrow, FACS

text: mouse pro B cells [09-002]


characteristic: External Id

text: Casellas lab, NIAMS, NIH

characteristic: INSDC first public

text: live

text: Generic

text: male

text: fluorescence activated cell sorting

text: Mus musculus

text: bone marrow

text: Mouse Pre B cells, Bone Marrow, FACS

text: mouse pre B cells [09-002]


text: Casellas lab, NIAMS, NIH

characteristic: INSDC last update

text: live

text: Generic

text: male

text: fluorescence activated cell sorting

text: Mus musculus

characteristic: organism

text: spleen

text: Mouse Immature B cells, Spleen, FACS

text: mouse immature B cells [09-002]


text: Casellas lab, NIAMS, NIH

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: male

text: fluorescence activated cell sorting

text: Mus musculus

text: spleen

text: Mouse Mature Resting B cells, Spleen, FACS

text: mouse mature B cells (spleen) replicate 1 [09-002]


text: Casellas lab, NIAMS, NIH

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: male

text: fluorescence activated cell sorting

text: Mus musculus

text: spleen

text: Mouse Mature resting B cells, Spleen, FACS

text: mouse mature B cells (spleen) replicate 2 [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

characteristic: NCBI submission package

text: male

text: CD43 negative magnetic beads selection

text: Mus musculus

text: spleen

text: Mouse Mature B cells, Spleen, in vitro LPS/IL-4 activated

text: mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]

characteristic: title


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

characteristic: SRA accession

text: male

text: CD43 negative magnetic beads selection

text: Mus musculus

text: spleen

characteristic: strain

text: mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: CD43 negative magnetic beads selection

text: Mus musculus

text: spleen

text: mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: CD43 negative magnetic beads selection

text: Mus musculus

text: spleen

text: Mouse Mature B cells, Spleen, in vitro LPS/anti-IgD-Dextran activated

text: mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: fluorescence activated cell sorting

text: Mus musculus

text: peritoneal lavage

text: Mouse B1 B cells, Peritoneal Lavage, FACS

text: mouse B1 B cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: fluorescence activated cell sorting

text: Mus musculus

text: spleen

text: Mouse Marginal Zone B cells, Spleen, FACS

text: mouse marginal zone B cells (spleen) [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: fluorescence activated cell sorting

text: Mus musculus

text: lymph nodes

text: Mouse Germinal Center B cells, Lymph Nodes, FACS

text: mouse germinal center B cells (lymph node) [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: fluorescence activated cell sorting

text: Mus musculus

text: lymph nodes

text: Mouse Plasma Cells, Lymph Nodes, FACS

text: IL-6 transgenic

text: mouse plasma cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: bone marrow

text: Mouse Hematopoietic Progenitor cells, Bone Marrow, in vitro expanded

text: mouse hematopoetic progenitor cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: bone marrow

text: Mouse Mast cells, Bone Marrow, in vitro differentiated

text: mouse mast cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: bone marrow

text: Mouse Basophils, Bone Marrow, in vitro differentiated

text: mouse basophil cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: peritoneal lavage

text: Mouse Neutrophils, Peritoneal Lavage

text: mouse neutrophil cells replicate 1 [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: peritoneal lavage

text: Mouse Neutrophils, Peritoneal Lavage

text: mouse neutrophil cells replicate 2 [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: bone marrow

text: Mouse Macrophage-derived Dendritic Cells, Bone Marrow, in vitro differentiated

text: mouse dendritic cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: bone marrow

text: Mouse Macrophages, Bone Marrow, in vitro culture

text: mouse macrophages [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: spleen

text: Mouse NK cells, Spleen, in vitro culture

text: RAG-/-

text: mouse natural killer cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: thymus

text: Mouse CD4 and CD8 positive T cells, Thymus, FACS

text: mouse CD4+CD8+ T cells (thymus) [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: spleen

text: Mouse Naive CD4 positive T cells, Spleen, FACS

text: mouse CD4+ T cells (spleen) [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: spleen

text: Mouse CD8 positive T cells, Spleen, FACS

text: mouse CD8+ T cells (spleen) [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: spleen

text: Mouse T cells, Spleen, in vitro Concanavalin A activated

text: mouse T cells activated in vitro with Concanavalin A [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: lymph nodes/spleen

text: Mouse Naive CD4 positive T cells, in vitro Th1 polarized

text: mouse Th1 cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: lymph nodes/spleen

text: Mouse Naive CD4 positive T cells, in vitro Th2 polarized

text: mouse Th2 cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: lymph nodes/spleen

text: Mouse Naive CD4 positive T cells, in vitro Th17 polarized

text: mouse Th17 cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: fluorescence activated cell sorting

text: Mus musculus

text: spleen

text: Mouse Follicular B Helper T cells, Spleen, FACS

text: mouse TFHS cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: lymph nodes/spleen

text: Mouse Naive CD4 positive T cells, in vitro iTreg polarized

text: mouse iTreg cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: fluorescence activated cell sorting

text: Mus musculus

text: lymph nodes/spleen

text: Mouse Natural Regulatory T cells, Lymph Nodes / Spleen, FACS

text: mouse nTreg cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: Laboratory of Richard A. Young, Withead Institute for Biomedical Research, Cambridge, MA, USA

characteristic: biomaterial provider

text: Mus musculus

text: Mouse Embryonic Stem Cells, cultured

text: mouse embryonic stem cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

characteristic: developmental stage

text: Mus musculus

text: Mouse Embryonic Fibroblasts, cultured

text: mouse embryonic fibroblast cells [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

characteristic: gender

text: Mus musculus

text: Mouse Heart

text: heart

characteristic: tissue

text: mouse heart tissue [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: Mouse Brain

text: brain

text: mouse brain tissue [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: Mouse Lung

text: lung

text: mouse lung tissue [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: Mouse Liver

text: liver

text: mouse liver tissue [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: Mouse Kidney

text: kidney

text: mouse kidney tissue [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: Mouse Pancreas

text: pancreas

text: mouse pancreatic tissue [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: Mouse Skin

text: skin

text: mouse skin tissue [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: Mouse Skeletal Muscle

text: skeletal muscle

text: mouse muscle tissue [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: Mouse Salivary Glands

text: salivary glands

text: mouse salivary gland tissue [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: Mouse Testes

text: testes

text: mouse testicular tissue [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: female

text: Mus musculus

text: Mouse Ovaries

text: ovaries

text: mouse ovaries [09-002]


text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: spleen

characteristic: source

text: Mouse Mature B cells, Spleen, in vitro LPS/IL-4 activated

text: BclXL transgenic BalbC

text: mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]


characteristic: External Id

text: Casellas lab, NIAMS, NIH

text: live

text: Generic

text: male

text: Mus musculus

text: lymph nodes

text: Mouse Germinal Center B cells, Lympn Nodes, FACS

text: BclXL transgenic BalbC

text: mouse BclXL germinal center B cells [BalbC] [09-002]


SolexaLV

text: Iowa State University

characteristic: INSDC first public

text: live

text: Generic

text: Penaeus vannamei

text: Reduced representation library sequencing for Pacific white shrimp


P.ultimum DAOM BR144 Sample

text: J. Craig Venter Institute

characteristic: INSDC last update

text: live

text: Generic

text: Genome sequencing of Pythium ultimum DAOM BR144 using a hybrid Sanger and pyrosequencing strategy

characteristic: description

text: Globisporangium ultimum DAOM BR144

text: Generic sample from Pythium ultimum DAOM BR144


text: NCBI

characteristic: INSDC secondary accession

text: live

text: Generic

text: human metagenome

characteristic: organism

text: HMP Crohn's disease microbiome sample A_1001_05_PG1_trial from subject 1001 (sex unknown)


text: NCBI

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: human metagenome

text: HMP Crohn's disease microbiome sample A_1003_04_PG1_trial from subject 1003 (sex unknown)


text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: human metagenome

text: HMP vaginal microbiome sample EX166083VC16 from subject EP166083


text: NCBI

text: live

text: Generic

characteristic: SRA accession

text: human metagenome

text: HMP vaginal microbiome sample EX166083VC06 from subject EP166083

characteristic: title


text: NCBI

text: live

text: Generic

text: human metagenome

text: HMP vaginal microbiome sample EX166083VC26 from subject EP166083


text: NCBI

text: live

text: Generic

text: human metagenome

text: HMP vaginal microbiome sample EX166083VC19 from subject EP166083


text: NCBI

text: live

text: Generic

text: human metagenome

text: HMP vaginal microbiome sample EX132191VC03 from subject EP132191


text: NCBI

text: live

text: Generic

text: human metagenome

text: HMP vaginal microbiome sample EX336960VC24 from subject EP336960