text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal, USF-1 (C-20). Antibody Target: USF1

characteristic: antibody antibodydescription

text: Rabbit polyclonal, USF-1 (C-20).

text: The ubiquitously expressed cellular upstream stimulatory factor (USF) consists of USF-1 and USF-2 polypeptides which independently exhibit site-specific DNA binding and are members of the c-Myc-related family of regulatory factors containing helix-loop-helix domains. USF also contains a leucine repeat that is required for efficient DNA binding. USF was originally identified as an up- stream stimulatory factor that binds the core sequence CACGTG in the adeno- virus late promoter. These findings, together with the demonstration of coop- erative interaction between USF and the initiator-binding protein, TFII-I, raises the possibility of a more general involvement of USF in transcriptional regula- tion. While expression of both USF-1 and USF-2 species is ubiquitous, different ratios of USF homo- and heterodimers are found in different cell types.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: WiCell Research Institute

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

tag: attribute

text: HEB (A-20) Rabbit polyclonal IgG, 200 ?g/ml. Epitope mapping within the C-terminus of HEB of human origin. Antibody Target: TCF12

text: The protein encoded by this gene is a member of the basic helix-loop-helix (bHLH) E-protein family that recognizes the consensus binding site (E-box) CANNTG. This encoded protein is expressed in many tissues, among them skeletal muscle, thymus, B- and T-cells, and may participate in regulating lineage-specific gene expression through the formation of heterodimers with other bHLH E-proteins. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal, Sin3A (k-20). Antibody Target: SIN3AK20

characteristic: antibody antibodydescription

text: Rabbit polyclonal, Sin3A (k-20).

text: Co-repressor interacting with HDAC1, N-coR, SMRT, and MeCP2

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: WiCell Research Institute

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_H1-hESC_Sin3Ak-20_PCR1x


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_A549_USF-1_EtOH_0.02pct_PCR1x

characteristic: treatment

text: 1 h with 0.02% EtOH (Myers)

text: 1 h with 0.02% Ethanol (Myers)


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, EGR-1 (588).

characteristic: antibody antibodydescription

text: Rabbit polyclonal, EGR-1 (588). Antibody Target: EGR1

text: Egr-1, Egr-2, Egr-3 and Egr-4 are nuclear transcription factors belonging to the Egr C2H2-type zinc-finger protein family and containing three C2H2-type zinc fingers. As immediate early proteins, Egr transcription factors are rapidly induced by diverse extracellular stimuli. Egr proteins are subject to tight differential control through diverse mechanisms at several levels of regulation including transcriptional, translational and post-translational (including glyco- sylation, phosphorylation and redox) mechanisms and protein-protein inter- action. Egr-1 binds to the DNA sequence 5'-CGCCCCCGC-3' (EGR-site), there- by activating transcription of target genes whose products are required for mitogenisis and differentiation. Egr-2 binds specific DNA sites located in the promoter region of HoxA4. Egr-2 defects cause congenital hypomyelination neuropathy (also designated Charcot-Marie-tooth disease) and Dejerine- Sottas neuropathology (also designated hereditary motor and sensory neuro- pathy III. Egr-3 is involved in muscle spindle development and is expressed in T cells 20 minutes following activation. EGR-4 binds to the EGR consensus motif GCGTGGGCG, functions as a transcriptional repressor, and displays autoregulatory activities, downregulating its on gene promoter in a dose dependent manner.

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: WiCell Research Institute

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_H1-hESC_Egr-1_v041610.2

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Mouse monoclonal (p250). Antibody Target: TAF1

text: Mouse monoclonal (p250)

text: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

text: tier 1

text: MACS


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

text: Mouse monoclonal IgG, raised against recombinant HNF-3a of human origin. Antibody Target: FOXA1

text: This gene encodes a member of the forkhead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver. (provided by RefSeq)

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

characteristic: protocol description

characteristic: replicate

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_HepG2_FOXA1_(SC-101058)_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

text: T-47D is a human epithelial cell line derived from an mammary ductal carcinoma.

text: epithelial cell line derived from a mammary ductal carcinoma.

text: cancer

characteristic: cell karyotype

text: F

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_T-47D_RevXlinkChromatin_DMSO_0.02pct_v041610.2

characteristic: title

characteristic: treatment

text: 1 h with 0.02% DMSO (Myers)

characteristic: treatment description

text: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal, EGR-1 (588).

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_GM12878_Egr-1_v041610.1

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

characteristic: protocol description

text: 2-cycles of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_A549_RevXlinkChromatin_EtOH_0.02pct_PCR2x

characteristic: title

characteristic: treatment

text: 1 h with 0.02% EtOH (Myers)

text: 1 h with 0.02% Ethanol (Myers)


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

text: Coriell

text: lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

characteristic: cell organism

text: F

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: tier 1

text: HudsonAlpha_ChipSeq_GM12878_RevXlinkChromatin_v041610.1

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

characteristic: antibody antibodydescription

text: Rabbit polyclonal IgG, epitope corresponding to amino acids 151-305 mapping at the C-terminus of Nanog of human origin. Antibody Target: NANOG

text: Transcription regulator involved in inner cell mass and embryonic stem (ES) cells proliferation and self-renewal. Imposes pluripotency on ES cells and prevents their differentiation towards extraembryonic endoderm and trophectoderm lineages. Blocks bone morphogenetic protein-induced mesoderm differentiation of ES cells by physically interacting with SMAD1 and interfering with the recruitment of coactivators to the active SMAD transcriptional complexes (By similarity). Acts as a transcriptional activator or repressor (By similarity). Binds optimally to the DNA consensus sequence 5'-TAAT[GT][GT]-3' or 5'-[CG][GA][CG]C[GC]ATTAN[GC]-3' (By similarity). When overexpressed, promotes cells to enter into S phase and proliferation (By similarity) (provided by RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: WiCell Research Institute

characteristic: biomaterial provider

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_H1-hESC_NANOG_(SC-33759)_v041610.2


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal IgG, epitope corresponding to amino acids 1-134 of Oct3/4 of human origin. Antibody Target: POU5F1

text: This gene encodes a transcription factor containing a POU homeodomain. This transcription factor plays a role in embryonic development, especially during early embryogenesis, and it is necessary for embryonic stem cell pluripotency. A translocation of this gene with the Ewing's sarcoma gene, t(6;22)(p21;q12), has been linked to tumor formation. Alternative splicing, as well as usage of alternative translation initiation codons, results in multiple isoforms, one of which initiates at a non-AUG (CUG) start codon. Related pseudogenes have been identified on chromosomes 1, 3, 8, 10, and 12 (provided by RefSeq).

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: WiCell Research Institute

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_H1-hESC_POU5F1_(SC-9081)_v041610.2

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the N-terminus of FOSL1 of human origin. Antibody Target: FOSL1

characteristic: antibody antibodydescription

text: The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_K562_FOSL1_(SC-183)_v041610.1

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NRSF

text: Mouse monoclonal. Antibody Target: NRSF

text: Mouse monoclonal

text: Neuron-restrictive silencer transcription factor

text: (Made by Protein Expression Center: pec@caltech.edu)

text: Dr. David Anderson at Caltech

characteristic: antibody vendorname

text: David Anderson, Caltech

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

text: Rabbit polyclonal, USF-1 (C-20). Antibody Target: USF1

characteristic: antibody antibodydescription

text: Rabbit polyclonal, USF-1 (C-20).

text: The ubiquitously expressed cellular upstream stimulatory factor (USF) consists of USF-1 and USF-2 polypeptides which independently exhibit site-specific DNA binding and are members of the c-Myc-related family of regulatory factors containing helix-loop-helix domains. USF also contains a leucine repeat that is required for efficient DNA binding. USF was originally identified as an up- stream stimulatory factor that binds the core sequence CACGTG in the adeno- virus late promoter. These findings, together with the demonstration of coop- erative interaction between USF and the initiator-binding protein, TFII-I, raises the possibility of a more general involvement of USF in transcriptional regula- tion. While expression of both USF-1 and USF-2 species is ubiquitous, different ratios of USF homo- and heterodimers are found in different cell types.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_K562_USF-1_v041610.1

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal IgG. Antibody Target: ETS1

text: Rabbit polyclonal IgG

text: ETS transcriptions factors, such as ETS1, regulate numerous genes and are involved in stem cell development, cell senescence and death, and tumorigenesis

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: tier 1

text: MACS

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

characteristic: antibody antibodydescription

text: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL2

text: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes

text: abcam

text: Abcam

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_K562_Pol2-4H8_v041610.1


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Goat polyclonal IgG, epitope mapping at the C-terminus of FOXA1 of human origin. Antibody Target: FOXA1

text: This gene encodes a member of the forehead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver (RefSeq).

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes

characteristic: cell description

text: endoderm

characteristic: cell lineage

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_ECC-1_FOXA1_(SC-6553)_DMSO_0.02pct_v041610.2

characteristic: title

characteristic: treatment

text: 1 h with 0.02% DMSO (Myers)

text: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

text: cancer

characteristic: cell karyotype

text: endoderm

text: epithelia

text: F

characteristic: cell sex

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: tier 1

text: HudsonAlpha_ChipSeq_ECC-1_RevXlinkChromatin_DMSO_0.02pct_v041610.2

text: 1 h with 0.02% DMSO (Myers)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1

characteristic: antibody antibodydescription

text: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: ATCC

text: F

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_K562_YY1_(SC-281)_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: RAD21

text: Rabbit polyclonal

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

text: abcam

text: Abcam

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_K562_Rad21_v041610.2

characteristic: title

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: HRT1 (C-20) Goat polyclonal IgG, 200 ?g/ml. Epitope mapping near the C-terminus of HRT1 of human origin

characteristic: antibody antibodydescription

text: This gene encodes a nuclear protein belonging to the hairy and enhancer of split-related (HESR) family of basic helix-loop-helix (bHLH)-type transcriptional repressors. Expression of this gene is induced by the Notch and c-Jun signal transduction pathways. Two similar and redundant genes in mouse are required for embryonic cardiovascular development, and are also implicated in neurogenesis and somitogenesis. Alternative splicing results in multiple transcript variants.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: liver carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: ChipSeq

text: ChIP-Seq

text: HudsonAlpha

characteristic: lab

text: Myers - Hudson Alpha Institute for Biotechnology

characteristic: lab description

text: Homo sapiens

characteristic: protocol

text: tier 1

text: HudsonAlpha_ChipSeq_HepG2_HEY1_v041610.1

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Kaiso (6F8) Mouse monoclonal IgG1. Raised against amino acids 1-504 representing full length Kaiso of human origin. Recommended for detection of Kaiso of m, r, h, canine and chicken origin by WB, IP, IF and ELISA. Antibody Target: ZBTB33

text: KAISO is a transcriptional regulator that binds, via its zinc fingers, to DNA sequences containing methylated CGCG or to the consensus KAISO-binding site (KBS) TCCTGCNA

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse monoclonal (p250). Antibody Target: TAF1

characteristic: antibody antibodydescription

text: Mouse monoclonal (p250)

text: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: WiCell Research Institute

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_H1-hESC_TAF1_v041610.2

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal. Fra-2(Q-20) is an affinity purified raised against the N-terminus of Fra-2 of human origin. Recommended for detection of Fra-2 of m, r, h and chicken origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: FOSL2

text: The Fos gene family consists of 4 members: FOS, FOSB, FOSL1, and FOSL2. These genes encode leucine zipper proteins that can dimerize with proteins of the JUN family, thereby forming the transcription factor complex AP-1. As such, the FOS proteins have been implicated as regulators of cell proliferation, differentiation, and transformation.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: protocol description

characteristic: replicate

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_HepG2_FOSL2_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RXRa(D-20) is an affinity purified rabbit polyclonal antibody raised against a peptide mapping at the N-terminus of RXRalpha of human origin. Recommended for detection of RXRalpha of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: RXRA

characteristic: antibody antibodydescription

text: Retinoid X receptors (RXRs) and retinoic acid receptors (RARs), are nuclear receptors that mediate the biological effects of retinoids by their involvement in retinoic acid-mediated gene activation. These receptors exert their action by binding, as homodimers or heterodimers, to specific sequences in the promoters of target genes and regulating their transcription. The protein encoded by this gene is a member of the steroid and thyroid hormone receptor superfamily of transcriptional regulators.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Goat polyclonal IgG, epitope mapping at the N-terminus of CTCF of human origin. Antibody Target: CTCF

text: This gene is a member of the BORIS + CTCF gene family and encodes a transcriptional regulator protein with 11 highly conserved zinc finger (ZF) domains. This nuclear protein is able to use different combinations of the ZF domains to bind different DNA target sequences and proteins. (provided by RefSeq)

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_A549_CTCF_(SC-5916)_DEX_100nM_PCR1x

characteristic: treatment

text: 1 h with 100 nM Dexamethasone (Myers)

characteristic: treatment description

text: 1 h with 100 nM DEX (Myers)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP

characteristic: antibody antibodydescription

text: The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: ATCC

text: ectoderm

characteristic: cell lineage

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

text: MACS

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: ectoderm

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_A549_CTCF_(SC-5916)_EtOH_0.02pct_PCR1x

characteristic: treatment

text: 1 h with 0.02% EtOH (Myers)

characteristic: treatment description

text: 1 h with 0.02% Ethanol (Myers)


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal, USF-1 (C-20). Antibody Target: USF1

text: The ubiquitously expressed cellular upstream stimulatory factor (USF) consists of USF-1 and USF-2 polypeptides which independently exhibit site-specific DNA binding and are members of the c-Myc-related family of regulatory factors containing helix-loop-helix domains. USF also contains a leucine repeat that is required for efficient DNA binding. USF was originally identified as an up- stream stimulatory factor that binds the core sequence CACGTG in the adeno- virus late promoter. These findings, together with the demonstration of coop- erative interaction between USF and the initiator-binding protein, TFII-I, raises the possibility of a more general involvement of USF in transcriptional regula- tion. While expression of both USF-1 and USF-2 species is ubiquitous, different ratios of USF homo- and heterodimers are found in different cell types.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

text: HudsonAlpha_ChipSeq_A549_USF-1_DEX_100nM_PCR1x

text: 1 h with 100 nM Dexamethasone (Myers)

text: 1 h with 100 nM DEX (Myers)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

text: Kaiso (6F8) Mouse monoclonal IgG1. Raised against amino acids 1-504 representing full length Kaiso of human origin. Recommended for detection of Kaiso of m, r, h, canine and chicken origin by WB, IP, IF and ELISA. Antibody Target: ZBTB33

text: KAISO is a transcriptional regulator that binds, via its zinc fingers, to DNA sequences containing methylated CGCG or to the consensus KAISO-binding site (KBS) TCCTGCNA

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_HCT-116_ZBTB33_v041610.1

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL2

text: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes

text: abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: MACS

text: HudsonAlpha_ChipSeq_U87_Pol2-4H8_v041610.1

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

text: Rabbit polyclonal IgG, epitope corresponding to a.a. 295-465 mapping at the C-terminus of HNF4A of human origin. Antibody Target: HNF4A

text: The protein encoded by this gene is a nuclear transcription factor which binds DNA as a homodimer. The encoded protein controls the expression of several genes, including hepatocyte nuclear factor 1 alpha, a transcription factor which regulates the expression of several hepatic genes (RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol description

characteristic: replicate

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_HepG2_HNF4A_(SC-8987)_v041610.1


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Goat polyclonal IgG, epitope mapping at the C-terminus of FOXA1 of human origin. Antibody Target: FOXA1

text: This gene encodes a member of the forehead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver (RefSeq).

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_HepG2_FOXA1_(SC-6553)_v041610.1

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

text: hepatocellular carcinoma

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: M

characteristic: cell sex

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

text: 2-cycles of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_HepG2_RevXlinkChromatin_PCR2x

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RevXlinkChromatin

text: ATCC

characteristic: biomaterial provider

text: liver carcinoma

characteristic: cell description

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: M

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: protocol description

characteristic: replicate

text: tier 1

text: HudsonAlpha_ChipSeq_HepG2_RevXlinkChromatin_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit Polyclonal. Antibody Target: GR

characteristic: antibody antibodydescription

text: Glucocorticoid Receptor

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes

text: endoderm

characteristic: cell lineage

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_ECC-1_GR_EtOH_0.02pct_v041610.2

characteristic: title

characteristic: treatment

text: 1 h with 0.02% EtOH (Myers)

text: 1 h with 0.02% Ethanol (Myers)


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: 2-cycles of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_A549_RevXlinkChromatin_DEX_100nM_PCR2x

text: 1 h with 100 nM Dexamethasone (Myers)

characteristic: treatment description

text: 1 h with 100 nM DEX (Myers)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal. Antibody Target: RAD21

characteristic: antibody antibodydescription

text: Rabbit polyclonal

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: WiCell Research Institute

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_H1-hESC_Rad21_v041610.2

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RevXlinkChromatin

characteristic: antibody

text: Coriell

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, Treatment: Epstein-Barr Virus transformed

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_GM12891_RevXlinkChromatin_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

characteristic: cell karyotype

text: mesoderm

text: human

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_K562_RevXlinkChromatin_v041610.1

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody

text: Rabbit polyclonal IgG, epitope corresponding to a.a. 232-281 mapping at the C-terminus of E2F-6 of human origin. Antibody Target: E2F6

characteristic: antibody antibodydescription

text: This gene encodes a member of the E2F transcription factor protein family. E2F family members play a crucial role in control of the cell cycle and of the action of tumor suppressor proteins. They are also a target of the transforming proteins of small DNA tumor viruses. Many E2F proteins contain several evolutionarily conserved domains: a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. The encoded protein of this gene is atypical because it lacks the transactivation and tumor suppressor protein association domains. It contains a modular suppression domain and is an inhibitor of E2F-dependent transcription. The protein is part of a multimeric protein complex that contains a histone methyltransferase and the transcription factors Mga and Max. Multiple transcript variants have been reported for this gene, but it has not been clearly demonstrated that they encode valid isoforms (RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: tier 1

text: MACS

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal. Antibody Target: YY1

text: Rabbit polyclonal

text: YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: tier 1

text: MACS

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody

text: Goat polyclonal IgG, epitope mapping at the C-terminus of HDAC2 of human origin. Antibody Target: HDAC2

characteristic: antibody antibodydescription

text: This gene product belongs to the histone deacetylase family. Histone deacetylases act via the formation of large multiprotein complexes, and are responsible for the deacetylation of lysine residues at the N-terminal regions of core histones (H2A, H2B, H3 and H4). This protein forms transcriptional repressor complexes by associating with many different proteins, including YY1, a mammalian zinc-finger transcription factor. (provided by RefSeq)

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_K562_HDAC2_(SC-6296)_v041610.2

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal IgG, epitope corresponding to a.a. 75-160 mapping within internal region of USF1 of human origin. Antibody Target: USF1

text: This gene encodes a member of the basic helix-loop-helix leucine zipper family, and can function as a cellular transcription factor. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs. This gene has been linked to familial combined hyperlipidemia (FCHL). Two transcript variants encoding distinct isoforms have been identified for this gene. (provided by RefSeq).

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

characteristic: cell description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_SK-N-SH_RA_USF1_(SC-8983)_v041610.2

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody

characteristic: antibody antibodydescription

text: Goat polyclonal IgG, epitope mapping at the C-terminus of LRF of human origin. Antibody Target: ZBTB7A

text: Plays a key role in the instruction of early lymphoid progenitors to develop into B lineage by repressing T-cell instructive Notch signals (By similarity).

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_K562_ZBTB7A_(SC-34508)_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL2

text: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_HCT-116_Pol2-4H8_v041610.1

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

characteristic: cell

text: colorectal carcinoma (PMID: 7214343)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: tier 1

text: HudsonAlpha_ChipSeq_HCT-116_RevXlinkChromatin_v041610.1

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

text: Mouse monoclonal [18B12DE6] to Ctip1. Raised against a cocktail of BCL11A fusion proteins. Reacts with human and mouse. Tested for ICC/IF, IHC-P, IP, WB. Antibody Target: BCL11A

text: This gene encodes a C2H2 type zinc-finger protein by its similarity to the mouse Bcl11a/Evi9 protein. Functions as a myeloid and B-cell proto-oncogene. May play important roles in leukemogenesis and hematopoiesis. An essential factor in lymphopoiesis,is required for B-cell formation in fetal liver. May function as a modulator of the transcriptional repression activity of ARP1 (By similarity)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: WiCell Research Institute

characteristic: biomaterial provider

text: inner cell mass

text: M

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: protocol description

characteristic: replicate

text: tier 2

text: HudsonAlpha_ChipSeq_H1-hESC_BCL11A_v041610.2

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal

text: Rabbit polyclonal. Antibody Target: SRF

text: Serum response transcription factor

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_GM12878_SRF_v041610.1

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal. Antibody Target: NRSF

characteristic: antibody antibodydescription

text: Neuron-restrictive silencer transcription factor

characteristic: antibody targetdescription

text: (Made by Protein Expression Center: pec@caltech.edu)

characteristic: antibody vendorid

text: Dr. David Anderson at Caltech

characteristic: antibody vendorname

text: David Anderson, Caltech

text: ATCC

characteristic: biomaterial provider

text: ectoderm

characteristic: cell lineage

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

text: F

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

text: HudsonAlpha_ChipSeq_HeLa-S3_RevXlinkChromatin_PCR1x


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal

characteristic: antibody antibodydescription

text: Rabbit polyclonal, raised against C-terminal 127 amino acids of FOXP2 of human origin. Antibody Target: FOXP2

text: transcriptional repressor, involved in development of speech

characteristic: antibody targetdescription

text: This gene encodes a member of the forkhead/winged-helix (FOX) family of transcription factors. Transcriptional repressor, involved in the development of speech

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: neuroectodermal cell line derived from a cerebral brain tumor, (PMID: 1316433)

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

text: 2-cycles of PCR (Myers)

text: tier 1

characteristic: replicate description

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RevXlinkChromatin

characteristic: antibody

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_GM12891_RevXlinkChromatin_PCR1x


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

text: Coriell

characteristic: biomaterial provider

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, Treatment: Epstein-Barr Virus transformed

text: mesoderm

text: human

characteristic: cell organism

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_GM12892_RevXlinkChromatin_v041610.1


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mouse monoclonal. Dec-1(S-8) is an IgG2b antibody raised against recombinant DEC1 of human origin. Recommended for detection of DEC1 of mouse and human origin by WB, IP and ELISA. Antibody Target: BHLHE40

characteristic: antibody antibodydescription

text: Dec-1(S-8) is a mouse monoclonal IgG2b antibody raised against recombinant DEC1 of human origin. Recommended for detection of DEC1 of m and h origin by WB, IP and ELISA.

text: This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differe

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_HepG2_BHLHE40_v041610.1

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL2

text: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes

text: abcam

text: Abcam

text: WiCell Research Institute

characteristic: biomaterial provider

text: M

characteristic: cell sex

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_H1-hESC_Pol2-4H8_v041610.2


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labversion

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_Pol2-4H8_PCR1x


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat polyclonal IgG, epitope mapping at the N-terminus of CTCF of human origin. Antibody Target: CTCF

text: This gene is a member of the BORIS + CTCF gene family and encodes a transcriptional regulator protein with 11 highly conserved zinc finger (ZF) domains. This nuclear protein is able to use different combinations of the ZF domains to bind different DNA target sequences and proteins. (provided by RefSeq)

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: tier 1

text: HudsonAlpha_ChipSeq_HepG2_CTCF_(SC-5916)_v041610.1

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: mouse monoclonal, clone 8WG16

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

characteristic: cell description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: tier 1

text: HudsonAlpha_ChipSeq_GM12892_Pol2_v041610.2


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

characteristic: antibody

text: Coriell

characteristic: biomaterial provider

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, Treatment: Epstein-Barr Virus transformed

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_GM12892_RevXlinkChromatin_v041610.2


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mouse monoclonal (p250). Antibody Target: TAF1

characteristic: antibody antibodydescription

text: Mouse monoclonal (p250)

text: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: Coriell

characteristic: cell description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: tier 1

text: HudsonAlpha_ChipSeq_GM12892_TAF1_v041610.2

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL2

text: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes

text: abcam

text: Abcam

text: Coriell

characteristic: biomaterial provider

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: protocol description

text: tier 1

text: HudsonAlpha_ChipSeq_GM12892_Pol2-4H8_v041610.2

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RevXlinkChromatin

text: ATCC

characteristic: cell

text: glioblastoma, astrocytoma, (PMID: 4332744)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

characteristic: replicate

text: HudsonAlpha_ChipSeq_U87_RevXlinkChromatin_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

text: neuroepithelioma cell line derived from a metastatic supra-orbital human brain tumor, SK-N-MC was isolated in September of l971 and was found to have moderate dopamine - beta - hydroxylase activity as well as formaldehyde induced fluorescence indicative of intracellular catecholamines. - ATCC. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

text: cancer

text: ectoderm

text: human

text: F

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

text: 2-cycles of PCR (Myers)

text: tier 1

characteristic: replicate description

text: SK-N-MC

text: HudsonAlpha_ChipSeq_SK-N-MC_RevXlinkChromatin_PCR2x

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Goat polyclonal IgG, epitope mapping at the C-terminus of HDAC2 of human origin. Antibody Target: HDAC2

characteristic: antibody antibodydescription

text: This gene product belongs to the histone deacetylase family. Histone deacetylases act via the formation of large multiprotein complexes, and are responsible for the deacetylation of lysine residues at the N-terminal regions of core histones (H2A, H2B, H3 and H4). This protein forms transcriptional repressor complexes by associating with many different proteins, including YY1, a mammalian zinc-finger transcription factor. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: cell description

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_HepG2_HDAC2_(SC-6296)_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Elf-1 of human origin. Antibody Target: ELF1

text: This gene encodes an E26 transformation-specific related transcription factor. The encoded protein is primarily expressed in lymphoid cells and acts as both an enhancer and a repressor to regulate transcription of various genes. Alternative splicing results in multiple transcript variants. (provided by RefSeq)

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_K562_ELF1_(SC-631)_v041610.2

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit Polyclonal

characteristic: antibody antibodydescription

text: Rabbit Polyclonal. Antibody Target: P300

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

characteristic: cell description

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_SK-N-SH_RA_p300_v041610.2

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Elf-1 of human origin.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_GM12878_ELF1_(SC-631)_v041610.1

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal. Antibody Target: RAD21

characteristic: antibody antibodydescription

text: Rabbit polyclonal

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

text: Abcam

text: ATCC

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_SK-N-SH_RA_Rad21_v041610.2

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1

text: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_SK-N-SH_RA_YY1_(SC-281)_v041610.2

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit Polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_HepG2_p300_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal IgG. Antibody Target: JunD

text: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody

text: Mouse monoclonal IgG, raised against recombinant TAF II p55 (TAF7) of human origin. Antibody Target: TAF7

characteristic: antibody antibodydescription

text: The intronless gene for this transcription coactivator is located between the protocadherin beta and gamma gene clusters on chromosome 5. The protein encoded by this gene is a component of the TFIID protein complex, a complex which binds to the TATA box in class II promoters and recruits RNA polymerase II and other factors. This particular subunit interacts with the largest TFIID subunit, as well as multiple transcription activators. The protein is required for transcription by promoters targeted by RNA polymerase II (RefSeq).

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_H1-hESC_TAF7_(SC-101167)_v041610.2

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal

text: Rabbit polyclonal. Antibody Target: SRF

text: Serum response transcription factor

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of ATF3 of human origin. Antibody Target: ATF3

characteristic: antibody antibodydescription

text: Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_HepG2_ATF3_v041610.1

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Kaiso (6F8) Mouse monoclonal IgG1. Raised against amino acids 1-504 representing full length Kaiso of human origin. Recommended for detection of Kaiso of m, r, h, canine and chicken origin by WB, IP, IF and ELISA. Antibody Target: ZBTB33

text: KAISO is a transcriptional regulator that binds, via its zinc fingers, to DNA sequences containing methylated CGCG or to the consensus KAISO-binding site (KBS) TCCTGCNA

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Sp1(E-3) is a mouse monoclonal antibody raised against amino acids 121-345 mapping near the N-terminus of Sp1 ofhuman origin. Recommended for detection of Sp1 of m, r and h origin by WB, IP, IF and ELISA. Antibody Target: SP1

characteristic: antibody antibodydescription

text: SP1 is a transcription factor that binds to GC box promoters elements and selectively activates mRNA synthesis from genes that contain functional recognition sites. It can interact with G/C-rich motifs from the serotonin receptor promoter.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RXRA

characteristic: antibody

text: RXRa(D-20) is an affinity purified rabbit polyclonal antibody raised against a peptide mapping at the N-terminus of RXRalpha of human origin. Recommended for detection of RXRalpha of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: RXRA

text: Retinoid X receptors (RXRs) and retinoic acid receptors (RARs), are nuclear receptors that mediate the biological effects of retinoids by their involvement in retinoic acid-mediated gene activation. These receptors exert their action by binding, as homodimers or heterodimers, to specific sequences in the promoters of target genes and regulating their transcription. The protein encoded by this gene is a member of the steroid and thyroid hormone receptor superfamily of transcriptional regulators.

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: WiCell Research Institute

characteristic: biomaterial provider

text: M

characteristic: cell sex

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_H1-hESC_RXRA_v041610.2

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody antibodydescription

text: Sp1(E-3) is a mouse monoclonal antibody raised against amino acids 121-345 mapping near the N-terminus of Sp1 ofhuman origin. Recommended for detection of Sp1 of m, r and h origin by WB, IP, IF and ELISA.

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mouse monoclonal IgG, raised against a synthetic peptide corresponding to a.a. 900-909 of BCLAF1 of human origin. Antibody Target: BCLAF1

characteristic: antibody antibodydescription

text: This gene encodes a transcriptional repressor that interacts with several members of the BCL2 family of proteins. Overexpression of this protein induces apoptosis, which can be suppressed by co-expression of BCL2 proteins (RefSeq).

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_BCLAF1_(SC-101388)_v041610.1

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal IgG. Antibody Target: ETS1

text: Rabbit polyclonal IgG

text: ETS transcriptions factors, such as ETS1, regulate numerous genes and are involved in stem cell development, cell senescence and death, and tumorigenesis

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of MEF-2 of human origin. Antibody Target: MEF2A

characteristic: antibody antibodydescription

text: The protein encoded by this gene is a DNA-binding transcription factor that activates many muscme-specific, growth factor-induced, and stress-induced genes.

characteristic: antibody vendorid

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

characteristic: softwareversion


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of ATF3 of human origin. Antibody Target: ATF3

text: Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.

characteristic: antibody targetdescription

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: WiCell Research Institute

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_H1-hESC_ATF3_v041610.2

characteristic: title

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody antibodydescription

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1

text: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1

characteristic: antibody vendorid

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: WiCell Research Institute

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_H1-hESC_YY1_(SC-281)_v041610.2

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal IgG raised against human recombinant GATA-3. Antibody Target: GATA3

text: This gene encodes a protein which belongs to the GATA family of transcription factors. The protein contains two GATA-type zinc fingers and is a n important regulator of T-cell development and plays an important role in endothelial cell biology. Defects in this gene are the cause of hypoparathyroidism with sensorineural deafness and renal dysplasia (provided by RefSeq).

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from a mammary ductal carcinoma.

characteristic: cell description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_T-47D_GATA3_(SC-268)_DMSO_0.02pct_v041610.2

characteristic: treatment

text: 1 h with 0.02% DMSO (Myers)

text: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)