Metagenomic GS391-4F-02-843 Sample

characteristic: Bar Code #

text: S

characteristic: Direction

text: E

characteristic: External Id

characteristic: Fluorescence (ug/l)

text: Southern Ocean

characteristic: General Area

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: Temperature (deg C)

characteristic: date

text: Metagenomic

characteristic: description

text: metagenome

characteristic: organism

characteristic: sample depth (m)

characteristic: station

text: Generic sample from metagenome sequence


Metagenomic GS392-4F-01-772 Sample

status: PUBLIC

tag: attribute

text: S

text: E

text: Southern Ocean

text: J. Craig Venter Institute

text: live

characteristic: INSDC status

characteristic: Latitudinal Degrees

characteristic: Latitudinal Minute

characteristic: Latitudinal second

characteristic: Longitudinal Degrees

characteristic: Longitudinal Minutes

characteristic: Longitudinal Seconds

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: Sample Depth (ft)

characteristic: Water Depth (ft)

text: Metagenomic

text: metagenome

characteristic: salinity (psu)

characteristic: time

text: Generic sample from metagenome sequence

characteristic: title

characteristic: water depth (m)


Metagenomic GS393-4F-01-948 Sample

characteristic: Bar Code #

text: S

characteristic: Direction

text: E

characteristic: External Id

characteristic: Fluorescence (ug/l)

text: Southern Ocean

characteristic: General Area

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: Temperature (deg C)

characteristic: date

text: Metagenomic

characteristic: description

text: metagenome

characteristic: organism

characteristic: sample depth (m)

characteristic: station

text: Generic sample from metagenome sequence


text: school of life sciences

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Oryza sativa

text: rice seedlings

text: indica 93-11

characteristic: strain

text: Control

characteristic: stress

text: Control rice seedlings

characteristic: title


characteristic: External Id

text: school of life sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Oryza sativa

text: rice seedlings

text: indica 93-11

text: H2O2-treated rice seedlings


characteristic: Bar Code #

text: S

characteristic: Direction

text: E

characteristic: Fluorescence (ug/l)

text: Southern Ocean

characteristic: General Area

text: J. Craig Venter Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: Latitudinal Degrees

characteristic: Latitudinal Minute

characteristic: Latitudinal second

characteristic: Longitudinal Degrees

characteristic: Longitudinal Minutes

characteristic: Longitudinal Seconds

text: Generic

characteristic: Sample Depth (ft)

characteristic: Temperature (deg C)

text: Metagenomic

text: metagenome

characteristic: time

text: Generic sample from metagenome sequence


characteristic: External Id

text: MRDNA

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from ileal Crohn’s disease biopsy tissue. Denis O. Krause, Ainsley C. Little, Scot E. Dowd, Charles N. Bernstein Department of Animal Science, Department of Medical Microbiology, Department of Internal Medicine, University of Manitoba, Winnipeg, R3T 2N2, Canada. Research and Testing Laboratory, Lubbock, TX 79407 Adherent invasive Escherichia coli (AIEC) is a new type of E. coli that is highly invasive to enterocytes, can survive in macrophages, does not have the typical toxin genes associated with diarrheagenic strains, and is associated with 25 - 35% of Crohn’s disease (CD) patients. have completed the genome sequence AIEC strain UM146 a highly invasive strain associated with ileal CD.

characteristic: description

text: Escherichia coli UM146

characteristic: organism

characteristic: title


characteristic: Bar Code #

characteristic: Barometric Pressure (mbar)

text: S

characteristic: Direction

text: E

characteristic: Fluorescence (ug/l)

text: Open Ocean Transect

characteristic: General Area

text: clear, windy

characteristic: General Weather

text: J. Craig Venter Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: Latitudinal Degrees

characteristic: Latitudinal Minute

text: Generic

characteristic: Nutrient

characteristic: Total vol. H2O filtered (L)

characteristic: Water Depth (ft)

characteristic: Wave height (m)

characteristic: Wind Speed (kts)

characteristic: date

text: Metagenomic

text: metagenome

characteristic: salinity (psu)

characteristic: sample depth (m)

characteristic: station

text: Generic sample from metagenome sequence

characteristic: water depth (m)


characteristic: External Id

text: Ecole Polytechnique Federale de Lausanne, Switzerland

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NHDP-55 (Mycobacterium leprae strain) (DAF run no 21, on 12/12/2008, 1 lane, 36 cycles)

characteristic: description

text: Mycobacterium leprae

characteristic: organism

characteristic: strain

text: Mycobacterium leprae strain NHDP-55

characteristic: title


ZHJ1 biotype whitefly

text: Zhejiang University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: ZHJ1 biotype whiteflies were maintained on cotton. RNA was extracted using SV total RNA isolation system.

text: Bemisia tabaci

text: ZHJ1 biotype whitefly Illumina sequencing


text: Center for Comparative Microbial Ecology

text: live

text: Generic

text: Rat

text: Spain

characteristic: country

text: Rat Gut microbiome before/after antibiotic treatment

text: Rat

characteristic: host subject id

characteristic: host taxid

text: organismal metagenomes

characteristic: project name

characteristic: sample name

text: rat gut microbiome


characteristic: Bar Code #

characteristic: Barometric Pressure (mbar)

text: E

characteristic: Direction

characteristic: External Id

characteristic: Fluorescence (ug/l)

text: clear and sunny

characteristic: General Weather

text: J. Craig Venter Institute

characteristic: INSDC center name

text: live

text: Generic

text: 2 x 60

characteristic: Nutrient

characteristic: Sample Depth (ft)

characteristic: Temperature (deg C)

characteristic: Total vol. H2O filtered (L)

characteristic: Water Depth (ft)

characteristic: Wave height (m)

characteristic: Wind Speed (kts)

characteristic: date

text: Metagenomic

text: Southern Ocean: CEAMARC-47 2nm from Antarctica and 9.5nm from Mertz Glacier

characteristic: geo loc name

text: 67.052133 S 144.668833 E

characteristic: lat lon

text: metagenome

characteristic: salinity (psu)

characteristic: sample depth (m)

characteristic: station

characteristic: time

text: Generic sample from metagenome sequence

characteristic: water depth (m)


characteristic: External Id

text: Computational and Systems Biology, Genome Institute of Singapore

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: AB; wild type

characteristic: background

text: unfertilized eggs

characteristic: developmental stage

text: Danio rerio

characteristic: organism

text: Unfertilized egg

text: Maternal

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: AB; wild type

text: just fertilized one cell embryos

text: Danio rerio

text: developing embryos

text: 1 cell


text: live

text: Generic

text: AB; wild type

text: mixure of 16/32 cell embryos

text: Danio rerio

text: developing embryos

text: 16/32 cells


text: live

text: Generic

text: AB; wild type

text: mixure of 128/256 cell embryos

text: Danio rerio

text: developing embryos

text: 128/256 cells


text: live

text: Generic

text: AB; wild type

text: MBT stage embryo (3.5hpf)

text: Danio rerio

text: developing embryos


text: live

text: Generic

text: AB; wild type

text: post-MBT stage embryo (5.3hpf)

text: Danio rerio

text: developing embryos


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: mid-vaginal self-collected swabs

characteristic: description

text: human metagenome


text: live

text: Generic

text: Human microbiome, default sample for unclassified reads

text: human metagenome

text: human metagenome


Palomero maize

text: Centro de Investigacion y de Estudios Avanzados del Instituto Politecnico Nacional

text: live

text: Generic

characteristic: age

text: Zea mays landrace Palomero Toluqueno 3 week old plants

text: seedlings

characteristic: dev stage

text: Palomero Toluqueno

characteristic: landrace

text: Zea mays

text: Zea mays landrace Palomero Toluqueno


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: female

characteristic: host sex

text: Metagenome (NGS)

characteristic: molecular data type

text: human metagenome

text: Metagenomics

characteristic: study design

text: Crohn Disease

characteristic: study disease

text: Human Gut Microbiome in Crohn's Disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Human metagenome DNA sample from a female participant in the dbGaP study Human Gut Microbiome in Crohn's Disease


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: male

text: Metagenome (NGS)

text: human metagenome

characteristic: organism

text: Metagenomics

text: Crohn Disease

text: Human Gut Microbiome in Crohn's Disease

text: Yes

text: Human metagenome DNA sample from a male participant in the dbGaP study Human Gut Microbiome in Crohn's Disease

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: female

characteristic: host sex

text: Metagenome (NGS)

characteristic: molecular data type

text: human metagenome

text: Metagenomics

characteristic: study design

text: Human Gut Microbiome in Crohn's Disease

text: No


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: male

text: Metagenome (NGS)

text: human metagenome

text: Metagenomics

text: Human Gut Microbiome in Crohn's Disease

characteristic: study name

text: No

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: HMP

text: female

text: human metagenome

text: Metagenomics

text: Human metagenome DNA sample from a female participant in the dbGaP study The Microbial Ecology of Bacterial Vaginosis


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: HMP

text: female

text: human metagenome

characteristic: organism

text: Metagenomics

text: The Microbial Ecology of Bacterial Vaginosis

characteristic: title


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

text: HMP

text: Vaginal fluid

characteristic: histological type

text: female

characteristic: host sex

text: No

characteristic: is tumor

text: Vagina

characteristic: isolation source

text: human metagenome

text: Metagenomics

characteristic: study design

characteristic: study name

text: Human metagenome DNA sample from Vagina of a female participant in the dbGaP study The Microbial Ecology of Bacterial Vaginosis


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: HMP

text: luminal aspirate

text: male

text: Yes

text: Pouch

text: 16s rRNA (NGS)

characteristic: molecular data type

text: human metagenome

text: Prospective Longitudinal Cohort

text: Pouchitis

characteristic: study disease

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Human metagenome DNA sample from Pouch of a male participant in the dbGaP study The Role of the Gut Microbiota in Ulcerative Colitis


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: Biopsy

text: male

text: Yes

text: Pre-pouch ileum

text: 16s rRNA (NGS)

text: human metagenome

characteristic: organism

text: Prospective Longitudinal Cohort

text: Pouchitis

text: Yes

text: Human metagenome DNA sample from Pre-pouch ileum of a male participant in the dbGaP study The Role of the Gut Microbiota in Ulcerative Colitis

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: HMP

text: Biopsy

characteristic: histological type

text: male

characteristic: host sex

text: Yes

characteristic: is tumor

text: Pre-pouch ileum

characteristic: isolation source

text: 16s rRNA (NGS)

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: study design

text: Pouchitis

text: The Role of the Gut Microbiota in Ulcerative Colitis

characteristic: study name

text: Yes


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: HMP

text: Biopsy

text: male

text: Yes

text: Pouch

text: 16s rRNA (NGS)

characteristic: molecular data type

text: human metagenome

text: Prospective Longitudinal Cohort

text: Pouchitis

characteristic: study disease

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: luminal aspirate

text: male

text: Yes

text: Pouch

text: 16s rRNA (NGS)

text: human metagenome

characteristic: organism

text: Prospective Longitudinal Cohort

text: Pouchitis

text: Yes

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: HMP

text: luminal aspirate

characteristic: histological type

text: male

characteristic: host sex

text: Yes

characteristic: is tumor

text: Ileostomy

characteristic: isolation source

text: 16s rRNA (NGS)

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: study design

text: Pouchitis

characteristic: study name

text: Yes

text: Human metagenome DNA sample from Ileostomy of a male participant in the dbGaP study The Role of the Gut Microbiota in Ulcerative Colitis


text: UC Davis

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Puccinia striiformis f. sp. tritici PST-130

characteristic: race

characteristic: strain

text: Wheat stripe rust (race PST-130)


Solar Saltern Metagenome

text: Universidad Miguel Hernandez - Evolutionary Genomics Group

text: live

text: Generic

characteristic: SRA accession

text: Spain: Alicante; Bras del Port salterns

characteristic: country

text: The sample was collected from Bras del Port salterns in Alicante, Spain . The concentrator pond (SS19) was sampled on July 21, 2008. The salinity was measured using a hand refractometer (salinity 19%). The sample was sequentially filtered through a 5 micron and 0.22 micron-pore size polycarbonate filters using a peristaltic pump. Filters were stored at -80 deg C until DNA extraction. DNA was extracted as described before (Martin-Cuadrado et al, 2007), briefly, filters were thawed on ice and then treated with 1 mg/ml lysozyme and 0.2 mg/ml proteinase K (final concentrations). Nucleic acids were extracted with phenol/chloroform/isoamyl alcohol and chloroform/isoamyl alcohol and DNA integrity was checked by agarose gel electrophoresis. 5 micrograms of DNA sent separately for sequencing (Roche 454 GS-FLX system, Titanium chemistry, by GATC, Konstanz, Germany) (one full plate 454).

characteristic: description

text: saltern metagenome

characteristic: organism

text: Solar Saltern Metagenome Sample SS19

characteristic: title


characteristic: External Id

text: Ecole Polytechnique Federale de Lausanne, Switzerland

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: W-09 (Mycobacterium leprae strain from wild armadillo) (DAF run no 27, on 31/03/2009, 1 lane, 35 cycles)

text: Mycobacterium leprae

text: Mycobacterium leprae strain W-09


cth baseline

text: Virginia Commonwealth University

text: live

text: Generic

text: Clostridium thermocellum grown in batch culture on MJ minimal medium with 5g/l cellobiose as the carbon source. mRNA isolated from three biological replicates sampled during exponential growth was pooled.

text: Acetivibrio thermocellus ATCC 27405

text: ATCC 27405

text: Clostridium thermocellum ATCC 27405

text: type strain of Clostridium thermocellum

characteristic: type material


text: live

text: Generic

text: M. leprae strain NHDP-98 was isolated in Texas (US) from a Mexican born patient. (DAF run no 23, on 12/02/2009, 1 lane, 36 cycles)

text: Mycobacterium leprae

text: Mycobacterium leprae strain NHDP-98


intertidal protistan model community

text: University of Kaiserslautern

text: live

text: Generic

text: intertidal protistan model community

text: activated sludge metagenome

text: intertidal protistan model community


GS FLX Titanium

text: University of Kaiserslautern

text: live

text: Generic

text: activated sludge metagenome

text: Error rate of 454 GS FLX Titanium sequenced V4 and V9 PCR amplicons of various protists


sweet potato cultivar “Guangshu 87”

text: Crops Research Institute of Guangdong Academy of Agricultural Sciences(CRIGAAS), Guangzhou, China

text: live

text: Generic

text: Sweetpotato cultivar Guangshu 87 was grown on the experimental station of the Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China. Samples were collected from fibrous roots, pencil roots and storage roots.

text: Ipomoea batatas

text: sweet potato root


Guangshu 87

text: live

text: Generic

text: Guangshu 87

characteristic: cultivar

text: Ipomoea batatas

text: sweet potato root


text: Host Defense, RIMD, Osaka University

characteristic: INSDC first public

text: live

text: Generic

characteristic: antibody

text: Millipore

characteristic: antibody manufacturer

text: macrophages

characteristic: cell type

text: wild-type

characteristic: genotype/variation

text: Mus musculus

text: mouse macrophages, WT

text: 129 X B6

text: H3K27me3 levels of wild-type M-BMM


text: Host Defense, RIMD, Osaka University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Millipore

text: macrophages

text: Mus musculus

text: mouse macrophages, WT

text: 129 X B6

characteristic: strain

text: H3K27me3 levels of Jmjd3-/- M-BMM


text: Ludwig Institute for Cancer Research

text: live

text: Generic

characteristic: SRA accession

text: cell derived from metastatic melanoma

characteristic: cell line

text: male

characteristic: gender

text: Homo sapiens

characteristic: organism

text: lymph node

characteristic: source tissue

text: Low-passage culture of lymph node metastasis from cutaneous melanoma

text: LAU-Me280.R.LN melanoma cells patient LAU165 (454)


characteristic: External Id

text: Ludwig Institute for Cancer Research

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: cultured melanocyte

text: male

text: Homo sapiens

text: skin

text: Cultures of epidermal melanocytes

text: Normal melanocytes pool of 2 samples (454)

characteristic: title


text: Ludwig Institute for Cancer Research

characteristic: INSDC first public

text: live

text: Generic

text: cell derived from metastatic melanoma

text: female

text: Homo sapiens

text: skin

text: Low-passage culture of cutaneous metastasis from cutaneous melanoma

text: LAU-T618A melanoma cells patient LAU618 (454)


text: Ludwig Institute for Cancer Research

text: live

text: Generic

text: cell derived from metastatic melanoma

text: female

text: Homo sapiens

text: visceral tissue

text: Low-passage culture of visceral metastasis from cutaneous melanoma

text: LAU-T149D melanoma cells patient LAU149D (454)


text: Ludwig Institute for Cancer Research

text: live

text: Generic

text: cell derived from metastatic melanoma

text: male

text: Homo sapiens

text: lymph node

text: LAU-Me235 melanoma cells patient LAU63 (454)


text: Ludwig Institute for Cancer Research

text: live

text: Generic

text: cell derived from metastatic melanoma

text: female

text: Homo sapiens

text: skin

text: LAU-Me246.M1melanoma cells patient LAU108 (454)


text: Ludwig Institute for Cancer Research

text: live

text: Generic

text: cell derived from metastatic melanoma

text: male

text: Homo sapiens

text: lymph node

text: LAU-Me275 melanoma cells patient LAU50 (454)


text: Ludwig Institute for Cancer Research

text: live

text: Generic

text: cell derived from metastatic melanoma

text: male

text: Homo sapiens

text: skin

text: LAU-T50B melanoma cells patient LAU50 (454)


text: Mucosa Expression Screening, IKMB / 1st Dept. of Medicine, University Clinic of Schleswig Holstein

text: live

text: Generic

text: SMART cDNA synthesis and SOLiD V2 fragment library construction

characteristic: extract protocol

text: polyadenylated RNA

characteristic: library selection

text: Mus musculus

text: Small Intestine

characteristic: tissue


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: polyadenylated RNA

text: Mus musculus

text: Colon


text: live

characteristic: INSDC status

text: Generic

text: SOLiD V2 Whole Transcriptome Analysis Kit

text: ribosomal RNA depleted

text: Mus musculus

characteristic: strain

text: Small Intestine

text: small-intestine_ribosomal_RNA_depleted_RNA-Seq


text: live

text: Generic

characteristic: SRA accession

text: ribosomal RNA depleted

text: Mus musculus

text: Colon


text: Stanford University

text: live

text: Generic

text: Saccharomyces cerevisiae

text: RNase V1

characteristic: protocol

text: Yeast polyA RNA, RNase V1-treated

text: Total RNA from yeast, treated with RNase V1, replicate 1


text: Stanford University

text: live

text: Generic

text: Saccharomyces cerevisiae

characteristic: organism

text: RNase V1

text: Yeast polyA RNA, RNase V1-treated

text: Total RNA from yeast, treated with RNase V1, replicate 2


text: Stanford University

text: live

text: Generic

text: Saccharomyces cerevisiae

text: RNase V1

text: Yeast polyA RNA, RNase V1-treated

text: Total RNA from yeast, treated with RNase V1, replicate 3


text: Stanford University

text: live

text: Generic

text: Saccharomyces cerevisiae

text: RNase V1

text: Yeast polyA RNA, RNase V1-treated

text: Total RNA from yeast, treated with RNase V1, replicate 4


text: Stanford University

text: live

text: Generic

text: Saccharomyces cerevisiae

text: RNase S1

text: Yeast polyA RNA, RNase S1-treated

text: Total RNA from yeast, treated with RNase S1, replicate 1


text: Stanford University

text: live

text: Generic

text: Saccharomyces cerevisiae

text: RNase S1

text: Yeast polyA RNA, RNase S1-treated

text: Total RNA from yeast, treated with RNase S1, replicate 2


text: Stanford University

text: live

text: Generic

text: Saccharomyces cerevisiae

text: RNase S1

text: Yeast polyA RNA, RNase S1-treated

text: Total RNA from yeast, treated with RNase S1, replicate 3


characteristic: Bar Code #

characteristic: Barometric Pressure (mbar)

text: S

characteristic: Direction

text: E

characteristic: Fluorescence (ug/l)

text: Antarctica Open water

characteristic: General Area

text: cloudy

characteristic: General Weather

text: J. Craig Venter Institute

text: live

characteristic: Latitudinal Degrees

characteristic: Latitudinal Minute

characteristic: Latitudinal second

characteristic: Longitudinal Degrees

characteristic: Longitudinal Minutes

characteristic: Longitudinal Seconds

text: Generic

characteristic: Sample Depth (ft)

characteristic: Temperature (deg C)

characteristic: Total vol. H2O filtered (L)

characteristic: Water Depth (ft)

characteristic: Wave height (m)

characteristic: Wind Speed (kts)

characteristic: date

text: Metagenomic

characteristic: description

text: 3.0 micrometers

characteristic: filter size

text: metagenome

characteristic: salinity (psu)

characteristic: sample depth (m)

characteristic: station

characteristic: time

text: Generic sample from metagenome sequence

characteristic: water depth (m)


characteristic: Bar Code #

text: S

characteristic: Direction

text: E

characteristic: External Id

text: Organic Lake, Antarctica

characteristic: General Area

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Latitudinal Degrees

characteristic: Latitudinal Minute

characteristic: Latitudinal second

characteristic: Longitudinal Degrees

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Metagenomic

text: metagenome

characteristic: organism

characteristic: oxygen (mg/l)

characteristic: ph

text: Generic sample from metagenome sequence

characteristic: title

characteristic: turbidity (ntu)


characteristic: Bar Code #

text: S

characteristic: Direction

text: E

characteristic: External Id

text: Organic Lake, Antarctica (Re-sample of surface water

characteristic: General Area

text: J. Craig Venter Institute

characteristic: INSDC center name

text: live

characteristic: Longitudinal Minutes

characteristic: Longitudinal Seconds

text: Generic

characteristic: Sample Depth (ft)

characteristic: Temperature (deg C)

characteristic: Total vol. H2O filtered (L)

characteristic: date

text: Metagenomic

characteristic: description

text: metagenome

characteristic: sample depth (m)

characteristic: station

text: Generic sample from metagenome sequence


text: S

text: E

characteristic: Fluorescence (micro g/l)

text: Southern Ocean

text: J. Craig Venter Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Latitudinal Degrees

characteristic: Latitudinal Minute

characteristic: Latitudinal second

characteristic: Longitudinal Degrees

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: Water Depth (ft)

text: Metagenomic

text: metagenome

characteristic: organism

characteristic: salinity (psu)

characteristic: time

text: Generic sample from metagenome sequence

characteristic: water depth (m)


characteristic: External Id

text: Center for Pharmacogenomics, Washington University School of Medicine

characteristic: INSDC center name

text: live

text: Generic

text: unmethylated

characteristic: methylation status

text: Homo sapiens

text: Breast, McrBC library

text: breast

characteristic: tissue

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: methylated

text: Homo sapiens

text: Breast, RE library

text: breast


text: live

text: Generic

characteristic: NCBI submission model

text: unmethylated

text: Homo sapiens

text: Brain, McrBC library

text: brain


text: live

text: Generic

characteristic: NCBI submission package

text: unmethylated

text: Mus musculus

text: Brain, McrBC library

characteristic: strain

text: brain


text: live

text: Generic

characteristic: SRA accession

text: methylated

text: Mus musculus

text: Brain, RE library

text: brain


Sign epistasis

text: Stanford University

text: live

text: Generic

text: Saccharomyces cerevisiae

characteristic: organism

text: Sign epistasis between experimentally evolved adaptive mutations causes a rugged fitness landscape


text: DOE-CSP 2010

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Keywords: GSC:MIGS:2.1

characteristic: description

characteristic: investigation type

text: Mesotoga prima MesG1.Ag.4.2

text: Thermotogales bacterium mesG1 .Ag.4.2

characteristic: project name

text: Generic sample from Mesotoga prima MesG1.Ag.4.2


Ilyanassa embryonic cDNA, normalized

characteristic: External Id

text: U of Rochester

characteristic: INSDC center name

text: live

text: Generic

text: Embryos were collected in the follow stages: early cleavage (1 cell to 24 cells); 28 cells-4d 6 hours; gastrulation (~18h-48 hours); organogenesis (early and late trochophore, 72-96 hours). RNA was extracted with Trizol reagent (Invitrogen, WI, USA), re-extracted with phenol:chloroform and chloroform. RNA was quantified, and equal amounts from each of the four staging intervals were pooled.

text: Tritia

text: Ilyanassa embryonic cDNA, normalized


text: Stanford University

text: live

text: Generic

text: Sample name: D1 Sample date: 04/08/05 Cp interval: Pre-Cp Run D barcode: ACGAGTGCGT nonreplicated

text: human gut metagenome

text: Subject D, Sample 1, Pre-Cp, 08 April 2005

characteristic: title


text: Stanford University

characteristic: INSDC first public

text: live

text: Generic

text: Sample name: D2 Sample date: 05/06/05 Cp interval: Pre-Cp Run D barcode: ACGCTCGACA nonreplicated

text: human gut metagenome

text: Subject D, Sample 2, Pre Cp, 6. May. 2005


text: Stanford University

characteristic: INSDC last update

text: live

text: Generic

text: Sample name: D3 Sample date: 05/13/05 Cp interval: Pre-Cp Run D barcode: AGACGCACTC nonreplicated

text: human gut metagenome

text: Subject D, Sample 3, Pre Cp, 13. May. 2005


text: Stanford University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Sample name: D4 Sample date: 05/20/05 Cp interval: Pre-Cp Run D barcode: AGCACTGTAG nonreplicated

text: human gut metagenome

text: Subject D, Sample 4, Pre Cp, 20. May. 2005


text: Stanford University

text: live

characteristic: INSDC status

text: Generic

text: Sample name: D5 Sample date: 05/27/05 Cp interval: Pre-Cp Run D barcode: ATCAGACACG nonreplicated

text: human gut metagenome

text: Subject D, Sample 5, Pre Cp, 27. May. 2005


text: Stanford University

text: live

text: Generic

characteristic: NCBI submission model

text: Sample name: D6 Sample date: 05/28/05 Cp interval: Pre-Cp Run DE barcode: TAGTGTAGAT nonreplicated

text: human gut metagenome

text: Subject D, Sample 6, Pre Cp, 28. May. 2005


text: Stanford University

text: live

text: Generic

characteristic: NCBI submission package

text: Sample name: D7 Sample date: 05/29/05 Cp interval: Pre-Cp Run DE barcode: TCGATCACGT nonreplicated

text: human gut metagenome

text: Subject D, Sample 7, Pre Cp, 29. May. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D8 Sample date: 05/30/05 Cp interval: Pre-Cp Run D barcode: ATATCGCGAG nonreplicated

text: human gut metagenome

text: Subject D, Sample 8, Pre Cp, 30. May. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D9 Sample date: 05/31/05 Cp interval: Pre-Cp Run DE barcode: TCGCACTAGT D9_a - replicate PCR identical conditions Run DE barcode: CGTGTCTCTA D9_b - replicate PCR identical conditions Run DE barcode: ACACATACGC D9_5n - replicate PCR 5 ng template DNA instead of 50 ng

text: human gut metagenome

text: Subject D, Sample 9, Pre Cp, 31. May. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D10 Sample date: 06/01/05 Cp interval: Pre-Cp Run DE barcode: TCTAGCGACT D10_a - replicate PCR identical conditions Run DE barcode: CTCGCGTGTC D10_b - replicate PCR identical conditions Run DE barcode: ACAGTCGTGC D10_5n - replicate PCR 5 ng template DNA instead of 50 ng

text: human gut metagenome

text: Subject D, Sample 10, Pre Cp, 1. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D11 Sample date: 06/02/05 Cp interval: Pre-Cp Run D barcode: CGTGTCTCTA D11_a - replicate PCR identical conditions Run D barcode: CTCGCGTGTC D11_b - replicate PCR identical conditions

text: human gut metagenome

text: Subject D, Sample 11, Pre Cp, 2. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D12 Sample date: 06/03/05 Cp interval: 1st_Cp Run D barcode: TAGTATCAGC nonreplicated

text: human gut metagenome

text: Subject D, Sample 12, 1st Cp, 3. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D13 Sample date: 06/04/05 Cp interval: 1st_Cp Run DE barcode: TCTATACTAT D13_a - replicate PCR identical conditions Run DE barcode: TAGTATCAGC D13_b - replicate PCR identical conditions Run DE barcode: ACATGACGAC D13_5n - replicate PCR 5 ng template DNA instead of 50 ng

text: human gut metagenome

text: Subject D, Sample 13, 1st Cp, 4. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D14 Sample date: 06/05/05 Cp interval: 1st_Cp Run D barcode: TCTCTATGCG nonreplicated

text: human gut metagenome

text: Subject D, Sample 14, 1st Cp, 5. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D15 Sample date: 06/06/05 Cp interval: 1st_Cp Run DE barcode: TGACGTATGT D15_a - replicate PCR identical conditions Run DE barcode: TCTCTATGCG D15_b - replicate PCR identical conditions Run DE barcode: ACGACAGCTC D15_5n - replicate PCR 5 ng template DNA instead of 50 ng

text: human gut metagenome

text: Subject D, Sample 15, 1st Cp, 6. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D16 Sample date: 06/07/05 Cp interval: 1st_Cp Run D barcode: TGATACGTCT D16_a - replicate PCR identical conditions Run D barcode: TACTGAGCTA D16_b - replicate PCR identical conditions

text: human gut metagenome

text: Subject D, Sample 16, 1st Cp, 7. Jun. 2005


text: Wilhelmina Children's Hospital, University Medical Center Utrecht

text: live

text: Generic

text: no

characteristic: enrichment

text: WILDTYPE for unknown causal mutation

characteristic: genotype

text: Arabidopsis thaliana

text: The 136 mutant has a shorter root meristem and a reduction in root length of about 75% compared to wild type.

characteristic: phenotype

text: seedling

text: seedling

characteristic: tissue


text: live

text: Generic

characteristic: SRA accession

text: no

text: MUTANT for unknown causal mutation

text: Arabidopsis thaliana

characteristic: organism

text: seedling

text: seedling


text: live

text: Generic

text: yes

text: MUTANT for unknown causal mutation

text: Arabidopsis thaliana

text: seedling

text: seedling


text: live

text: Generic

text: no

text: WILDTYPE for unknown causal mutation

text: Arabidopsis thaliana

text: Mutant 193 (qc19-3), displays both a root and shoot meristem phenotype, where stem cell identity is reduced, lost or re-organized

text: seedling

text: seedling


text: live

text: Generic

text: no

text: MUTANT for unknown causal mutation

text: Arabidopsis thaliana

text: seedling

text: seedling


text: live

text: Generic

text: yes

text: MUTANT for unknown causal mutation

text: Arabidopsis thaliana

text: seedling

text: seedling


text: live

text: Generic

text: no

text: WILDTYPE for unknown causal mutation

text: Arabidopsis thaliana

text: supressor of RBR over expression

text: seedling

text: seedling


text: live

text: Generic

text: yes

text: WILDTYPE for unknown causal mutation

text: Arabidopsis thaliana

text: supressor of RBR over expression

text: seedling

text: seedling


text: live

text: Generic

text: no

text: MUTANT for unknown causal mutation

text: Arabidopsis thaliana

text: supressor of RBR over expression

text: seedling

text: seedling


text: live

text: Generic

text: yes

text: MUTANT for unknown causal mutation

text: Arabidopsis thaliana

text: supressor of RBR over expression

text: seedling

text: seedling


text: live

text: Generic

text: yes

text: F1 animals from mutant vs wildtype

text: Rattus norvegicus

text: tail

text: tail


text: live

text: Generic

text: yes

text: F1 animals from mutant vs wildtype

text: Rattus norvegicus

text: tail

text: tail

text: gabr


text: live

text: Generic

text: yes

text: F1 animals from mutant vs wildtype

text: Rattus norvegicus

text: tail

text: tail

text: qsnul


text: live

text: Generic

text: yes

text: F1 animals from mutant vs wildtype

text: Rattus norvegicus

text: tail

text: tail

text: vip


text: live

text: Generic

text: yes

text: F1 animals from mutant vs wildtype

text: Rattus norvegicus

text: tail

text: tail

text: trpm


text: live

text: Generic

text: yes

text: F1 animals from mutant vs wildtype

text: Rattus norvegicus

text: tail

text: tail

text: ppargama


text: live

text: Generic

text: yes

text: F1 animals from mutant vs wildtype

text: Rattus norvegicus

text: tail

text: tail

text: disc


text: Stanford University

text: live

text: Generic

text: Sample name: D17 Sample date: 06/08/05 Cp interval: 1st_WPC Run D barcode: CATAGTAGTG nonreplicated

characteristic: description

text: human gut metagenome

text: Subject D, Sample 17, 1st WPC, 8. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D18 Sample date: 06/09/05 Cp interval: 1st_WPC Run D barcode: CGAGAGATAC nonreplicated Run DE barcode: CGAGAGATAC D18_6m - replicate PCR separated by 6 month interval

text: human gut metagenome

text: Subject D, Sample 18, 1st WPC, 9. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D19 Sample date: 06/10/05 Cp interval: 1st_WPC Run DE barcode: TGTGAGTAGT D19_a - replicate PCR identical conditions Run DE barcode: TGATACGTCT D19_b - replicate PCR identical conditions Run DE barcode: ACGTCTCATC D19_5n - replicate PCR 5 ng template DNA instead of 50 ng

text: human gut metagenome

text: Subject D, Sample 19, 1st WPC, 10. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D20 Sample date: 06/11/05 Cp interval: 1st_WPC Run D barcode: ATACGACGTA nonreplicated

text: human gut metagenome

text: Subject D, Sample 20, 1st WPC, 11. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D21 Sample date: 06/12/05 Cp interval: 1st_WPC Run DE barcode: ACAGTATATA D21_a - replicate PCR identical conditions Run DE barcode: TACTGAGCTA D21_b - replicate PCR identical conditions Run DE barcode: ACTCATCTAC D21_5n - replicate PCR 5 ng template DNA instead of 50 ng

text: human gut metagenome

text: Subject D, Sample 21, 1st WPC, 12. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D22 Sample date: 06/13/05 Cp interval: 1st_WPC Run DE barcode: ACGCGATCGA nonreplicated Run DE barcode: ACTCGCGCAC D22_5n - replicate PCR 5 ng template DNA instead of 50 ng

text: human gut metagenome

text: Subject D, Sample 22, 1st WPC, 13. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D23 Sample date: 06/14/05 Cp interval: 1st_WPC Run D barcode: TCACGTACTA nonreplicated

text: human gut metagenome

text: Subject D, Sample 23, 1st WPC, 14. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D24 Sample date: 06/21/05 Cp interval: Interim Run D barcode: CGTCTAGTAC nonreplicated

text: human gut metagenome

text: Subject D, Sample 24, Interim, 21. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D25 Sample date: 06/28/05 Cp interval: Interim Run D barcode: TCTACGTAGC nonreplicated

text: human gut metagenome

text: Subject D, Sample 25, Interim, 28. Jun. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D26 Sample date: 07/05/05 Cp interval: Interim Run D barcode: TGTACTACTC nonreplicated

text: human gut metagenome

text: Subject D, Sample 26, Interim, 5. Jul. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D27 Sample date: 08/05/05 Cp interval: Interim Run D barcode: ACGACTACAG nonreplicated

text: human gut metagenome

text: Subject D, Sample 27, Interim, 5. Aug. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D28 Sample date: 09/05/05 Cp interval: Interim Run D barcode: CGTAGACTAG nonreplicated

text: human gut metagenome

text: Subject D, Sample 28, Interim, 5. Sep. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D29 Sample date: 10/10/05 Cp interval: Interim Run D barcode: TACGAGTATG nonreplicated

text: human gut metagenome

text: Subject D, Sample 29, Interim, 10. Oct. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D30 Sample date: 11/03/05 Cp interval: Interim Run D barcode: TACTCTCGTG nonreplicated

text: human gut metagenome

text: Subject D, Sample 30, Interim, 3. Nov. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D31 Sample date: 11/10/05 Cp interval: Interim Run D barcode: TAGAGACGAG nonreplicated

text: human gut metagenome

text: Subject D, Sample 31, Interim, 10. Nov. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D32 Sample date: 11/18/05 Cp interval: Interim Run D barcode: TCGTCGCTCG nonreplicated

text: human gut metagenome

text: Subject D, Sample 32, Interim, 18. Nov. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D33 Sample date: 11/25/05 Cp interval: Interim Run DE barcode: ACTAGCAGTA nonreplicated

text: human gut metagenome

text: Subject D, Sample 33, Interim, 25. Nov. 2005


text: Stanford University

text: live

text: Generic

text: Sample name: D34 Sample date: 11/26/05 Cp interval: Interim Run DE barcode: AGCTCACGTA nonreplicated

text: human gut metagenome

text: Subject D, Sample 34, Interim, 26. Nov. 2005


text: BGI

text: live

text: Generic

text: Oryza sativa

text: Oryza sativa


NP

text: BGI

text: live

text: Generic

text: Oryza sativa

text: Oryza sativa


text: Black

characteristic: ColorDescription

text: No

characteristic: CowMilk

text: No

characteristic: Formula

text: Center for Comparative Microbial Ecology

text: live

text: Generic

characteristic: age days

text: y

text: Yes

characteristic: breastmilk

text: USA

characteristic: country

text: Succession of microbial consortia in the developing infant gut microbiome

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: keywords

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: infant time series

characteristic: project name

text: y

characteristic: public

characteristic: sample name

text: male

characteristic: sex

text: PRE

characteristic: solid food


Mother

text: No

characteristic: CowMilk

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: y

text: USA

characteristic: description

text: ENVO:feces

text: ENVO:feces

text: ENVO:feces

text: GSC:MIMARKS

text: human gut metagenome

characteristic: organism

text: infant time series

text: y

text: Mother

text: female

text: PRE

characteristic: title


text: BrightGreen

characteristic: ColorDescription

text: No

text: No

characteristic: Formula

text: live

text: Generic

characteristic: age days

text: y

text: Yes

characteristic: breastmilk

text: USA

characteristic: country

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: keywords

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: infant time series

characteristic: project name

text: y

characteristic: public

text: male

text: PRE


text: YellowSomeSolidFlakes

text: No

characteristic: CowMilk

characteristic: External Id

text: No

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: y

text: Yes

text: USA

characteristic: description

text: ENVO:feces

text: ENVO:feces

text: ENVO:feces

text: GSC:MIMARKS

text: human gut metagenome

characteristic: organism

text: infant time series

text: y

characteristic: sample name

text: male

characteristic: sex

text: PRE

characteristic: solid food


text: BrightYellow

characteristic: ColorDescription

text: No

text: No

characteristic: Formula

text: live

text: Generic

characteristic: age days

text: y

text: Yes

characteristic: breastmilk

text: USA

characteristic: country

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: keywords

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: infant time series

characteristic: project name

text: y

text: male

text: PRE

characteristic: title


text: Yellow

text: No

characteristic: CowMilk

characteristic: External Id

text: No

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: y

text: Yes

text: USA

characteristic: description

text: ENVO:feces

text: ENVO:feces

text: ENVO:feces

text: GSC:MIMARKS

text: human gut metagenome

characteristic: organism

text: infant time series

text: y

characteristic: public

characteristic: sample name

text: male

characteristic: sex

text: PRE


text: Yellow

characteristic: ColorDescription

text: No

text: No

characteristic: Formula

text: live

text: Generic

characteristic: age days

text: Yes

characteristic: breastmilk

text: infant microbiome

text: scraped off diaper

characteristic: host taxon id

text: GSC:MIMARKS

characteristic: keywords

text: human metagenome

text: male

text: PRE

characteristic: solid food

text: infant time series


text: DarkYellow

text: No

characteristic: CowMilk

characteristic: External Id

text: No

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: y

text: Yes

text: USA

characteristic: country

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: infant time series

characteristic: project name

text: y

text: male

text: PRE

characteristic: title


text: Green

characteristic: ColorDescription

text: No

text: No

characteristic: Formula

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age days

text: y

text: Yes

characteristic: breastmilk

text: USA

characteristic: description

text: ENVO:feces

text: ENVO:feces

text: ENVO:feces

text: GSC:MIMARKS

characteristic: keywords

text: human gut metagenome

characteristic: organism

text: infant time series

text: y

characteristic: public

characteristic: sample name

text: male

characteristic: sex

text: PRE

characteristic: solid food


text: Yellow

text: No

characteristic: CowMilk

characteristic: External Id

text: No

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: y

text: Yes

text: USA

characteristic: country

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: infant time series

characteristic: project name

text: y

text: male

text: POST


text: Green

characteristic: ColorDescription

text: No

text: No

characteristic: Formula

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age days

text: y

text: Yes

characteristic: breastmilk

text: USA

characteristic: description

text: ENVO:feces

text: ENVO:feces

text: ENVO:feces

text: GSC:MIMARKS

characteristic: keywords

text: human gut metagenome

characteristic: organism

text: infant time series

text: y

characteristic: public

characteristic: sample name

text: male

characteristic: sex

text: POST

characteristic: title


text: DarkYellow

text: No

characteristic: CowMilk

characteristic: External Id

text: No

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: y

text: Yes

text: USA

characteristic: country

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: infant time series

text: y

text: male

text: POST

characteristic: solid food


text: No

text: Yes

characteristic: Formula

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age days

text: y

text: Yes

characteristic: breastmilk

text: USA

characteristic: description

text: ENVO:feces

text: ENVO:feces

text: ENVO:feces

text: GSC:MIMARKS

characteristic: keywords

text: human gut metagenome

characteristic: organism

text: infant time series

characteristic: project name

text: y

characteristic: public

characteristic: sample name

text: male

characteristic: sex

text: POST


text: Green

characteristic: ColorDescription

text: No

characteristic: CowMilk

characteristic: External Id

text: Yes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: y

text: Yes

text: USA

characteristic: country

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: latitude

text: human gut metagenome

text: infant time series

text: y

text: male

text: POST

characteristic: title


text: Yellow

text: No

text: Yes

characteristic: Formula

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age days

text: y

text: Yes

characteristic: breastmilk

text: USA

characteristic: description

text: ENVO:feces

text: ENVO:feces

text: ENVO:feces

text: GSC:MIMARKS

characteristic: keywords

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: infant time series

characteristic: project name

text: y

characteristic: public

characteristic: sample name

text: male

text: POST

characteristic: solid food


text: Yes

characteristic: CowMilk

characteristic: External Id

text: No

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: y

text: No

text: USA

characteristic: country

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: latitude

text: human gut metagenome

text: infant time series

text: y

text: male

characteristic: sex

text: POST


text: BrownHeterogeneous

characteristic: ColorDescription

text: Yes

text: No

characteristic: Formula

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age days

text: y

text: No

characteristic: breastmilk

text: USA

characteristic: description

text: ENVO:feces

text: ENVO:feces

text: ENVO:feces

text: GSC:MIMARKS

characteristic: keywords

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: infant time series

characteristic: project name

text: y

characteristic: public

text: male

text: POST

characteristic: title


text: Brown

text: Yes

characteristic: CowMilk

characteristic: External Id

text: No

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: y

text: No

text: USA

characteristic: country

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: latitude

text: human gut metagenome

text: infant time series

text: y

characteristic: sample name

text: male

text: POST

characteristic: solid food


text: BrownHeterogeneous

characteristic: ColorDescription

text: Yes

text: No

characteristic: Formula

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age days

text: No

characteristic: breastmilk

text: infant microbiome

characteristic: description

text: bagel, cream cheese, tomato, cheese, apple juice, banana, crackers, milk (soup with beef and vegetables, pizza, tomatoes, banana, vanilla yogurt)

characteristic: host taxon id

text: GSC:MIMARKS

characteristic: keywords

text: human metagenome

characteristic: organism

text: male

characteristic: sex

text: POST

text: infant time series


Day _371

text: No

characteristic: CowMilk

characteristic: External Id

text: No

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: y

text: USA

characteristic: country

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: longitude

text: human gut metagenome

text: infant time series

characteristic: project name

text: y

characteristic: public

text: Day _371

text: male

text: Yes

characteristic: title


text: Black

characteristic: ColorDescription

text: No

text: No

characteristic: Formula

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age days

text: y

text: Yes

characteristic: breastmilk

text: USA

characteristic: description

text: ENVO:feces

text: ENVO:feces

text: ENVO:feces

text: GSC:MIMARKS

characteristic: keywords

characteristic: latitude

text: human gut metagenome

characteristic: organism

text: infant time series

text: y

characteristic: sample name

text: male

characteristic: sex

text: PRE

characteristic: solid food


text: BrightYellow

text: No

characteristic: CowMilk

characteristic: External Id

text: No

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: y

text: Yes

text: USA

characteristic: country

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: longitude

text: human gut metagenome

text: infant time series

characteristic: project name

text: y

characteristic: public

text: male

text: PRE


text: Yellow

characteristic: ColorDescription

text: No

text: No

characteristic: Formula

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age days

text: y

text: Yes

characteristic: breastmilk

text: USA

characteristic: description

text: ENVO:feces

text: ENVO:feces

text: ENVO:feces

text: GSC:MIMARKS

characteristic: keywords

characteristic: latitude

text: human gut metagenome

characteristic: organism

text: infant time series

text: y

characteristic: sample name

text: male

characteristic: sex

text: PRE

characteristic: title


text: YellowSomeSolidFlakes

text: No

characteristic: CowMilk

characteristic: External Id

text: No

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: y

text: Yes

text: USA

characteristic: country

characteristic: elevation

text: ENVO:feces

characteristic: env biome

text: ENVO:feces

characteristic: env feature

text: ENVO:feces

characteristic: env matter

characteristic: host subject id

text: GSC:MIMARKS

characteristic: longitude

text: human gut metagenome

text: infant time series

characteristic: project name

text: y

text: male

text: PRE

characteristic: solid food


text: Moscow State University, Belozersky Research Institute of Physico-Chemical Biology

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Fagopyrum esculentum subsp. ancestrale

characteristic: organism

text: Fagopyrum esculentum subsp. ancestrale floral transcriptome, sample 1


characteristic: External Id

text: CIT

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

characteristic: title


text: TCGTATGCCGTCTTCTGCTTGT

characteristic: 3prime adaptor

text: Baulcombe Group, Plant Sciences, University of Cambridge

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: vegetative cells

text: NO-

characteristic: strain

text: small RNAs from vegetative cells_SL139


text: TCGTATGCCGTCTTCTGCTTGT

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: vegetative cells

text: small RNAs from vegetative cells_SL140


text: TCGTATGCCGTCTTCTGCTTGT

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: starved vegetative cells

text: small RNAs from nitrogen starved vegetative cells_SL141


text: TCGTATGCCGTCTTCTGCTTGT

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: starved vegetative cells

text: small RNAs from nitrogen starved vegetative cells_SL142


text: TCGTATGCCGTCTTCTGCTTGT

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: gametes

text: NO-

text: small RNAs from gametes induced by nitrogen starvation_SL143


text: TCGTATGCCGTCTTCTGCTTGT

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: gametes

text: NO-

text: small RNAs from gametes induced by nitrogen starvation_SL144


text: TCGTATGCCGTCTTCTGCTTGT

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: nuclei from vegetative cells

text: small RNAs from the nuclei of vegetative cells_SL166


text: TCGTATGCCGTCTTCTGCTTGT

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: zygotes 30 min

text: small RNAs from zygotes_SL254


text: TCGTATGCCGTCTTCTGCTTGT

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: zygotes 2h

text: small RNAs from zygotes_SL255


text: TCGTATGCCGTCTTCTGCTTGT

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: zygotes 6h

text: small RNAs from zygotes_SL256


text: TCGTATGCCGTCTTCTGCTTGT

text: live

text: Generic

text: Chlamydomonas reinhardtii

text: vegetative cells

text: small RNAs from vegetative cells_SL305


text: live

text: Generic

text: Chlamydomonas reinhardtii

text: vegetative cells, genomic DNA

text: Genomic DNA_SL54


text: live

text: Generic

text: Methyl-cytosine

characteristic: antibody

text: Chlamydomonas reinhardtii

text: vegetative cells, Methylated-DNA enriched genomic DNA

text: MeOH DNA enriched genomic DNA_SL55


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

text: Autism Sequencing Consortium

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: BLOOD

characteristic: body site

text: GRU

text: BLOOD

characteristic: histological type

text: No

characteristic: is tumor

text: SNP/CNV Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

characteristic: study design

text: Autism Sequencing Consortium (ASC)

characteristic: study name

text: No

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

text: Autism Sequencing Consortium

characteristic: submitter handle

text: Non-tumor DNA sample from BLOOD of a human female participant in the dbGaP study Autism Sequencing Consortium (ASC)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Autism Sequencing Consortium

text: BLOOD

text: GRU

text: BLOOD

text: No

text: SNP/CNV Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: male

text: Case-Control

text: Autism Sequencing Consortium (ASC)

text: No

text: Autism Sequencing Consortium

text: Non-tumor DNA sample from BLOOD of a human male participant in the dbGaP study Autism Sequencing Consortium (ASC)

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

characteristic: host sex

text: human metagenome

text: Metagenomics

characteristic: study design

text: Human metagenome DNA sample from a female participant in the dbGaP study The Microbial Ecology of Bacterial Vaginosis


text: dbGaP

text: live

text: Generic

text: DNA

text: HMP

text: female

text: human metagenome

text: Metagenomics

text: The Microbial Ecology of Bacterial Vaginosis

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


Lake Lanier 454

characteristic: External Id

text: GATECH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: collection date

characteristic: depth

text: Planktonic microbial communities at 5m depth from Lake Lanier, Atlanta, GA, in August 2009, at noon

characteristic: description

text: freshwater metagenome

text: Lake Lanier metagenome


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Autism Sequencing Consortium

text: BLOOD

characteristic: body site

text: DS-ASD

text: BLOOD

characteristic: histological type

text: No

characteristic: is tumor

text: SNP/CNV Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Case-Control

text: Autistic Disorder

characteristic: study disease

text: Autism Sequencing Consortium (ASC)

text: Yes

characteristic: subject is affected

text: Autism Sequencing Consortium

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: analyte type

text: Autism Sequencing Consortium

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: BLOOD

text: DS-ASD

text: BLOOD

text: No

text: SNP/CNV Genotypes (NGS)

text: Homo sapiens

text: male

text: Case-Control

characteristic: study design

text: Autistic Disorder

text: Autism Sequencing Consortium (ASC)

characteristic: study name

text: Yes

characteristic: submitted sample id

characteristic: submitted subject id

text: Autism Sequencing Consortium

characteristic: submitter handle


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: GRU

text: Homo sapiens

characteristic: organism

text: female

text: Cross-Sectional

text: DNA sample from a human female participant in the dbGaP study High-Throughput Retrotransposon Discovery in Humans


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: GRU

text: Homo sapiens

text: female

characteristic: sex

text: Cross-Sectional

text: High-Throughput Retrotransposon Discovery in Humans

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: GRU

text: Homo sapiens

text: male

text: Cross-Sectional

text: DNA sample from a human male participant in the dbGaP study High-Throughput Retrotransposon Discovery in Humans


text: dbGaP

text: live

text: Generic

text: DNA

text: JapnICh

characteristic: biospecimen repository sample id

text: GRU

text: Homo sapiens

text: male

text: Cross-Sectional

characteristic: study design

characteristic: study name

text: JapnICh

characteristic: submitted sample id

text: JapnICh


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: JapnIFa

text: GRU

text: Homo sapiens

text: male

text: Cross-Sectional

text: JapnIFa

text: JapnIFa

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: JapnIMo

text: GRU

text: Homo sapiens

characteristic: organism

text: female

text: Cross-Sectional

text: JapnIMo

text: JapnIMo


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: JapnYCh

text: GRU

text: Homo sapiens

text: male

characteristic: sex

text: Cross-Sectional

text: JapnYCh

text: JapnYCh

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: JapnYFa

text: GRU

text: Homo sapiens

text: male

text: Cross-Sectional

text: JapnYFa

text: JapnYFa


text: dbGaP

text: live

text: Generic

text: DNA

text: JapnYMo

characteristic: biospecimen repository sample id

text: GRU

text: Homo sapiens

text: female

text: Cross-Sectional

characteristic: study design

characteristic: study name

text: JapnYMo

characteristic: submitted sample id

text: JapnYMo


text: Baylor College of Medicine

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Drosophila melanogaster DGRP-38

characteristic: description

text: Drosophila melanogaster

characteristic: strain

text: Drosophila melanogaster SRA sample SRS097454


text: Baylor College of Medicine

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Drosophila melanogaster DGRP-802

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster SRA sample SRS097455


T fusca muC

characteristic: External Id

text: Virginia Commonwealth University

characteristic: INSDC center name

text: live

text: Generic

text: Thermobifida fusca YX

text: YX

text: Laboratory evolution and multi-platform genome re-sequencing of the cellulolytic actinobacterium Thermobifida fusca

characteristic: title


text: Moscow State University, Belozersky Research Institute of Physico-Chemical Biology

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Fagopyrum tataricum

text: Fagopyrum tataricum floral transcriptome, sample 1


Kimchi metagenomics

text: School of Biological Sciences, Chung-Ang University

text: live

text: Generic

text: Thirty 1 kg kimchi bags were stored at the standard fermentation temperature (4*C). Periodically over the 29-day fermentation period, 3 bags were sacrificed and subjected to gauze filtration to remove large particles and the filtrates were pooled. The filtrates were centrifuged (8,000 rpm for 20 min at 4*C) to harvest microorganisms. The pellets were stored at -80*C for extraction of bulk genomic DNA. Total genomic DNA from kimchi was extracted using a FastDNA SPIN Kit (MPbio) and was sequenced using the 454 GS-FLX Titanium system.

text: metagenomes

text: metagenome from sample of fermented food kimchi


T fusca muS 454

text: Virginia Commonwealth University

text: live

text: Generic

text: Thermobifida fusca YX

text: YX


text: The University of Arizona

text: live

text: Generic

text: LSR1 aphids cured of all facultative symbionts

text: Acyrthosiphon pisum

text: LSR1 cure


text: The University of Arizona

text: live

text: Generic

text: LSR1 infected with S. symbiotica

text: Acyrthosiphon pisum

text: LSR1 infected with S. symbiotica


PGP9 genome

text: Personal Genomics Institute

text: live

text: Generic

text: PGP9 human female genome from PGP, Personal Genome Project.

text: Homo sapiens

text: PGP9's blood sample


S. columbaria pool 454

text: Radboud University Nijmegen

text: live

text: Generic

text: RNA was extracted from untreated plant material and plant material subjected to different treatments, from a total of 46 inbred and outbred individuals. Since cold is known to trigger gene expression in plants and to be responsible of many plant processes, inbred and outbred seedlings of S. columbaria were placed for 21 days in a 4*C environment and then germinated at 20*C. Another subset of inbred and outbred seedlings were germinated under a 1ppm ethylene flow (flow rate: 500 ml/min) for 25 days, as also ethylene can influence plant gene expression. Control seedlings were germinated at 20*C. RNA was also extracted from roots, rosette leaves and flowerbuds of inbred and outbred adult plants growing in different soil conditions.

text: Scabiosa columbaria

text: S.columbaria pool of 46 individuals


name: s.columbaria illumina inbred and outbred

text: Radboud University Nijmegen

text: live

text: Generic

text: As a first test for future transcriptional profiling experiments of inbreeding depression, leaf samples from one inbred and one outbred individual of S. columbaria were prepared for Illumina sequencing.

text: Scabiosa columbaria

text: inbred and outbred illumina


Tfu muC illumina

text: Virginia Commonwealth University

text: live

text: Generic

text: Thermobifida fusca YX

text: YX


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Escherichia coli EPECa12

text: Escherichia coli EPECa12


text: dbGaP

text: live

text: Generic

text: primary_o_Saliva (SAL)

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

characteristic: host sex

text: primary_o_Saliva (SAL)

characteristic: isolation source

text: human metagenome

text: Control Set

characteristic: submitted subject id

characteristic: submitter handle

text: Human metagenome sample from primary_o_Saliva (SAL) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary_o_Saliva (SAL)

text: HMP

text: male

text: primary_o_Saliva (SAL)

text: human metagenome

text: Control Set

characteristic: study design

text: HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: study name

characteristic: submitted sample id


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: primary_o_Tongue dorsum (TONG)

text: HMP

text: male

text: primary_o_Tongue dorsum (TONG)

text: human metagenome

characteristic: organism

text: Control Set

text: Human metagenome sample from primary_o_Tongue dorsum (TONG) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: primary_o_Hard palate (HPAL)

characteristic: analyte type

text: HMP

text: male

text: primary_o_Hard palate (HPAL)

text: human metagenome

text: Control Set

text: Human metagenome sample from primary_o_Hard palate (HPAL) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

text: live

text: Generic

text: primary_o_Buccal mucosa (BUCC)

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

characteristic: host sex

text: primary_o_Buccal mucosa (BUCC)

characteristic: isolation source

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from primary_o_Buccal mucosa (BUCC) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: HMP

text: male

text: human metagenome

text: Control Set

characteristic: study design

characteristic: study name

characteristic: submitter handle

text: Human metagenome sample from primary_o_Attached/Keratinized gingiva (GING) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: primary_o_Palatine Tonsils(PTON)

text: HMP

text: male

text: primary_o_Palatine Tonsils(PTON)

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from primary_o_Palatine Tonsils(PTON) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: analyte type

text: HMP

text: male

text: human metagenome

characteristic: organism

text: Control Set

text: Human metagenome sample from primary_o_Throat(THRO) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: primary_o_Supragingival plaque (SUPRA)

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

characteristic: host sex

text: primary_o_Supragingival plaque (SUPRA)

characteristic: isolation source

text: human metagenome

text: Control Set

text: Human metagenome sample from primary_o_Supragingival plaque (SUPRA) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary_o_Subgingival plaque(SUB)

text: HMP

text: male

text: primary_o_Subgingival plaque(SUB)

text: human metagenome

text: Control Set

characteristic: study design

characteristic: study name

characteristic: submitted subject id

text: Human metagenome sample from primary_o_Subgingival plaque(SUB) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: HMP

text: male

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from primary_s_L_Retroauricular crease (RAC_L) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: analyte type

text: HMP

text: male

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from primary_s_R_Retroauricular crease (RAC_R) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: primary_s_L_Antecubital fossa (ACF_L)

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

characteristic: host sex

text: primary_s_L_Antecubital fossa (ACF_L)

characteristic: isolation source

text: human metagenome

characteristic: organism

text: Control Set

text: Human metagenome sample from primary_s_L_Antecubital fossa (ACF_L) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary_s_R_Antecubital fossa (ACF_R)

text: HMP

text: male

text: primary_s_R_Antecubital fossa (ACF_R)

text: human metagenome

text: Control Set

characteristic: study design

characteristic: study name

text: Human metagenome sample from primary_s_R_Antecubital fossa (ACF_R) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: primary_s_Anterior nares (NASAL)

text: HMP

text: male

text: primary_s_Anterior nares (NASAL)

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from primary_s_Anterior nares (NASAL) of a male participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: analyte type

text: HMP

text: female

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from primary_g_Stool of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: primary_o_Saliva (SAL)

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

characteristic: host sex

text: primary_o_Saliva (SAL)

characteristic: isolation source

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from primary_o_Saliva (SAL) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary_o_Tongue dorsum (TONG)

text: HMP

text: female

text: primary_o_Tongue dorsum (TONG)

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: study name

text: Human metagenome sample from primary_o_Tongue dorsum (TONG) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: primary_o_Hard palate (HPAL)

text: HMP

text: female

text: primary_o_Hard palate (HPAL)

text: human metagenome

text: Control Set

text: Human metagenome sample from primary_o_Hard palate (HPAL) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: primary_o_Buccal mucosa (BUCC)

characteristic: analyte type

text: HMP

text: female

text: primary_o_Buccal mucosa (BUCC)

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from primary_o_Buccal mucosa (BUCC) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

characteristic: host sex

characteristic: isolation source

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from primary_o_Attached/Keratinized gingiva (GING) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary_o_Palatine Tonsils(PTON)

text: HMP

text: female

text: primary_o_Palatine Tonsils(PTON)

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted sample id

text: Human metagenome sample from primary_o_Palatine Tonsils(PTON) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: HMP

text: female

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from primary_o_Throat(THRO) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: primary_o_Supragingival plaque (SUPRA)

characteristic: analyte type

text: HMP

text: female

text: primary_o_Supragingival plaque (SUPRA)

text: human metagenome

text: Control Set

text: Human metagenome sample from primary_o_Supragingival plaque (SUPRA) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

text: live

text: Generic

text: primary_o_Subgingival plaque(SUB)

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

characteristic: host sex

text: primary_o_Subgingival plaque(SUB)

characteristic: isolation source

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from primary_o_Subgingival plaque(SUB) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: HMP

text: female

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitter handle

text: Human metagenome sample from primary_s_L_Retroauricular crease (RAC_L) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: HMP

text: female

text: human metagenome

text: Control Set

characteristic: submitted sample id

text: Human metagenome sample from primary_s_R_Retroauricular crease (RAC_R) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: primary_s_L_Antecubital fossa (ACF_L)

characteristic: analyte type

text: HMP

text: female

text: primary_s_L_Antecubital fossa (ACF_L)

text: human metagenome

text: Control Set

characteristic: study name

text: Human metagenome sample from primary_s_L_Antecubital fossa (ACF_L) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: primary_s_R_Antecubital fossa (ACF_R)

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

characteristic: host sex

text: primary_s_R_Antecubital fossa (ACF_R)

characteristic: isolation source

text: human metagenome

text: Control Set

text: Human metagenome sample from primary_s_R_Antecubital fossa (ACF_R) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary_s_Anterior nares (NASAL)

text: HMP

text: female

text: primary_s_Anterior nares (NASAL)

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: submitted subject id

text: Human metagenome sample from primary_s_Anterior nares (NASAL) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: primary_o_Supragingival plaque (SUPRA)

text: HMP

text: female

text: primary_o_Supragingival plaque (SUPRA)

text: human metagenome

text: Control Set

text: HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: submitter handle


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: primary_o_Subgingival plaque(SUB)

characteristic: analyte type

text: HMP

text: female

text: primary_o_Subgingival plaque(SUB)

text: human metagenome

text: Control Set

characteristic: submitted sample id


text: dbGaP

text: live

text: Generic

text: primary_s_L_Retroauricular crease (RAC_L)

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

characteristic: host sex

characteristic: isolation source

text: human metagenome

text: Control Set

characteristic: study name


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary_s_R_Retroauricular crease (RAC_R)

text: HMP

text: female

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: primary_s_L_Antecubital fossa (ACF_L)

text: HMP

text: female

text: primary_s_L_Antecubital fossa (ACF_L)

text: human metagenome

text: Control Set

characteristic: submitted subject id


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: primary_s_R_Antecubital fossa (ACF_R)

characteristic: analyte type

text: HMP

text: female

text: primary_s_R_Antecubital fossa (ACF_R)

text: human metagenome

text: Control Set

characteristic: submitter handle


text: dbGaP

text: live

text: Generic

text: primary_s_Anterior nares (NASAL)

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

characteristic: host sex

text: primary_s_Anterior nares (NASAL)

characteristic: isolation source

text: human metagenome

text: Control Set

characteristic: submitted sample id


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary_v_Vaginal introitus (INTRO)

text: HMP

text: female

text: primary_v_Vaginal introitus (INTRO)

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: study name

text: Human metagenome sample from primary_v_Vaginal introitus (INTRO) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: primary_v_Mid vagina (MIDVAG)

text: HMP

text: female

text: primary_v_Mid vagina (MIDVAG)

text: human metagenome

text: Control Set

text: Human metagenome sample from primary_v_Mid vagina (MIDVAG) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: primary_v_Posterior fornix (PFORN)

characteristic: analyte type

text: HMP

text: female

text: primary_v_Posterior fornix (PFORN)

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from primary_v_Posterior fornix (PFORN) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

text: live

text: Generic

text: Blood whole

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

characteristic: host sex

text: Blood whole

characteristic: isolation source

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from Blood whole of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: HMP

text: female

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: study name

characteristic: submitted sample id

text: Human metagenome sample from primary_g_Stool of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: primary_o_Saliva (SAL)

text: HMP

text: female

text: primary_o_Saliva (SAL)

text: human metagenome

text: Control Set

text: Human metagenome sample from primary_o_Saliva (SAL) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: primary_o_Tongue dorsum (TONG)

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: primary_o_Tongue dorsum (TONG)

text: human metagenome

text: Control Set

characteristic: submitted subject id

text: Human metagenome sample from primary_o_Tongue dorsum (TONG) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: primary_o_Hard palate (HPAL)

text: HMP

text: female

characteristic: host sex

text: primary_o_Hard palate (HPAL)

characteristic: isolation source

text: human metagenome

text: Control Set

characteristic: submitter handle

text: Human metagenome sample from primary_o_Hard palate (HPAL) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: primary_o_Buccal mucosa (BUCC)

text: HMP

text: female

text: primary_o_Buccal mucosa (BUCC)

text: human metagenome

characteristic: organism

text: Control Set

characteristic: study design

characteristic: study name

characteristic: submitted sample id

text: Human metagenome sample from primary_o_Buccal mucosa (BUCC) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: HMP

text: female

text: human metagenome

text: Control Set

text: Human metagenome sample from primary_o_Attached/Keratinized gingiva (GING) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: primary_o_Palatine Tonsils(PTON)

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

text: primary_o_Palatine Tonsils(PTON)

text: human metagenome

text: Control Set

text: Human metagenome sample from primary_o_Palatine Tonsils(PTON) of a female participant in the dbGaP study HMP Core Microbiome Sampling Protocol A (HMP-A)