characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: TFIIIC-110

characteristic: antibody antibodydescription

text: TFIIIC-110 is a subunit of the RNA Polymerase III transcription factor TFIIIC. Antiserum 4286 was raised by immunizing rabbits with synthetic peptide RPGFSPTSHRLLPTP (human TFIIIC110 residues 897 to 911) coupled to keyhole limpet hemocyanin.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Dr. Robert J. White, Beatson Institute for Cancer Research, UK

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: remapped from hg18

text: Homo sapiens


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Max

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

characteristic: antibody antibodydescription

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, a synthetic peptide corresponding to residues in C-terminus of human ELK-1 was used as immunogen. The antibody does not cross-react with other ETS family members. Antibody Target: ELK1

text: Elk-1 is a transcription factor that is part of the ets oncogene superfamily. Elk-1 forms a ternary complex with the serum response factors, SRE and SRF, mediating gene activity in response to serum and growth factors. Activation by several mitogen- activated protein kinases (Erk1 and Erk2) mediates the immediate early responses of the c-fos promoter to growth factors and other stimuli.

text: Epitomics

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM12878_ELK1_(1277-1)_IgG-mus

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Lonza

text: HUVEC

characteristic: cell

text: umbilical vein endothelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

text: Homo sapiens

text: HUVEC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: GATA2

characteristic: antibody antibodydescription

text: GATA binding protein 2

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Donated by Dr. E.H. Bresnick, UW Madison

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: HUVEC

text: umbilical vein endothelial cells

text: normal

text: mesoderm

text: human

text: U

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: HUVEC


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Max

text: Santa Cruz Biotech

text: WiCell Research Institute

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

characteristic: replicate

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse polyclonal antibody raised against a partial recombinant ZNF274 (GST-fusion of a.a.420-531 of human ZNF274 protein). Works in IP, WB and ELISA. Antibody Target: ZNF274

characteristic: antibody antibodydescription

text: ZNF274 is a zinc finger protein containing five C2H2-type zinc finger domains, two Kruppel-associated box A (KRABA) domains, and a leucine-rich SCAN domain. The encoded protein has been suggested to be a transcriptional repressor. It localizes predominantly to the nucleolus.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: ABNOVA

characteristic: antibody vendorname

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: ABNOVA

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

characteristic: replicate

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal IgG. Antibody Target: ELK4

characteristic: antibody antibodydescription

text: This gene is a member of the Ets family of transcription factors and of the ternary complex factor (TCF) subfamily. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: SUZ12

text: Suppressor of zeste 12 homolog, Polycomb group (PcG) protein, Component of the PRC2/EED-EZH2 complex

text: Antibody made by Farnham lab

text: WiCell Research Institute

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

characteristic: replicate

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/

characteristic: cell

text: acute promyelocytic leukemia cell line. (PMID: 1995093)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Fos

characteristic: antibody

text: Rabbit polyclonal to amino acids 210-335 mapping at the C-terminus of c-Fos of human origin. Antibody Target: c-Fos

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Mouse monoclonal. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2

characteristic: antibody antibodydescription

text: Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3').

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

characteristic: lab description

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment

text: Interferon gamma treatment - 30 minutes (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal to STAT1 (alpha) p-91 (C-24). Antibody Target: STAT1

characteristic: antibody antibodydescription

text: transcription factor, activated by interferon signalling

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse monoclonal, Immunogen corresponding to amino acids 201-286 of Human NRF1. Antibody Target: NRF1

characteristic: antibody antibodydescription

text: NRF1 is the mammalian homolog to the erect wing (ewg) Drosophila protein that is required for proper development of the central nervous system and indirect flight muscles. In mammals NRF1 functions as a transcription factor that activates the expression of the EIF2S1 (EIF-alpha) gene. This protein links the transcriptional modulation of key metabolic genes to cellular growth and development, and has been implicated in the control of nuclear genes required for respiration, heme biosynthesis and mitochondrialDNA transcription and replication. NRF1 forms a homodimer and binds DNA as a dimer. NRF1 shows a nuclear localization and is expressed widely in embryonic, fetal and adult tissues. Phosphorylation of NRF1 enhances DNA binding.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Rabbit polyclonal, Immunogen: Zinc finger with KRAB and SCAN domain-containing protein 1 recombinant protein epitope signature tag (PrEST). Antibody Target: ZKSCAN1

text: The ZKSCAN1 gene encodes a transcriptional regulator of the KRAB (Kruppel-associated box) subfamily of zinc finger proteins, which contain repeated Cys2-His2 (C2H2) zinc finger domains that are connected by conserved sequences, called H/C links. Transcriptional regulatory proteins containing tandemly repeated zinc finger domains are thought to be involved in both normal and abnormal cellular proliferation and differentiation.

text: Sigma-Aldrich

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_HeLa-S3_ZKSCAN1_(HPA006672)_IgG-rab

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

characteristic: lab description

text: remapped from hg18, V2

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: c-Jun

text: Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: E2F4

text: mapping at the C-terminus of E2F4 of human origin

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

text: Farnham - University of Southern California

characteristic: lab description

text: Fragmented using Bioruptor, precipitated with StaphA

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Mouse Monoclonal antibody HA.11 clone 16B12 was raised against the twelve amino acid peptide CYPYDVPDYASL. This second-generation HA antibody is an excellent substitute for the 12CA5 monoclonal antibody. The HA.11 antibody recognizes the influenza hemagglutinin epitope (YPYDVPDYA) which has been used extensively as a general epitope tag in expression vectors. The extreme specificity of the antibody allows unambiguous identification and quantitative analysis of the tagged protein. The HA.11 antibody recognizes HA epitopes located in the middle of protein sequences as well as at the N- or C-terminus. Antibody Target: HA-E2F1

characteristic: antibody antibodydescription

text: The HA-E2F1 protein is a derivative of E2F1, a member of the E2F family of transcription factors. The E2F family plays a crucial role in the control of cell cycle and action of tumor suppressor proteins and is also a target of the transforming proteins of small DNA tumor viruses. The E2F proteins contain several evolutionary conserved domains found in most members of the family. These domains include a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. This version of E2F1 includes an N terminal HA tag and a modified ER ligand binding domain to allow regulated translocation to the nucleus.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: HeLa cells stably expressed a tagged HA-E2F1 were fragmented using a Bioruptor, precipitated with StaphA and an antibody to the HA tag,

text: Homo sapiens

text: PeakSeq1.0 (fdr 0.001)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal - AP-2alpha (H-79) is a rabbit polyclonal antibody raised against amino acids 130-209 mapping within an internal region of AP-2alpha of human origin. Antibody Target: AP-2alpha

text: Sequence-specific DNA-binding protein that interacts with inducible viral and cellular enhancer elements to regulate transcription of selected genes. AP-2 factors bind to the consensus sequence 5' -GCCNNNGGC-3' and activate genes involved in a large spectrum of important biological functions including proper eye, face, body wall, limb and neural tube development. They also suppress a number of genes including MCAM/MUC18, C/EBP alpha and MYC. AP-2alpha is the only AP-2 protein required for early morphogenesis of the lens vesicle (by similarity).

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: YY1

characteristic: antibody antibodydescription

text: YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Fragmented using Bioruptor, precipitated with protein G magnetic beads,

text: Homo sapiens

text: PeakSeq1.0 (fdr 0.001)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: TR4

text: (Also: NR2C2) Members of the nuclear hormone receptor family, such as NR2C2, act as ligand-activated transcription factors. The proteins have an N-terminal transactivation domain, a central DNA-binding domain with 2 zinc fingers, and a ligand-binding domain at the C terminus.

text: Donated by Dr. J.D.Engel, University of Michigan

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

text: Fragmented using Bioruptor, precipitated with protein A agarose beads,

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Rabbit polyclonal - AP-2Y (H-77) is a rabbit polyclonal antibody raised against amino acids 145-221 mapping with in an internal region of AP-2Y of human origin. Antibody Target: AP-2gamma

characteristic: antibody antibodydescription

text: Sequence-specific DNA-binding protein that interacts with inducible viral and cellular enhancer elements to regulate transcription of selected genes. AP-2 factors bind to the consensus sequence 5'-GCCNNNGGC-3' and activate genes involved in a large spectrum of important biological functions including proper eye, face, body wall, limb and neural tube development. They also suppress a number of genes including MCAM/MUC18, C/EBP alpha and MYC.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

text: PeakSeq1.0 (fdr 0.001)

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: SIRT6

text: A synthetic peptide made to an internal region of the human SIRT6 protein

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal - Antiserum 1900 was raised by immunizing rabbits with synthetic peptide PKRPLTFDTNEFHIPLVT (residues 1374?1391 of the RPC155 subunit of human pol III) coupled to KLH. Antibody Target: RPC155

characteristic: antibody antibodydescription

text: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Donated by Dr. RJ White, The Beatson Institute for Cancer Research

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Illumina 2.0, low confidence sequences excluded, fragmented with both a probe sonicator and a Misonix sonicator, and precipitated with protein A sepharose beads

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: TR4

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

text: Farnham - University of Southern California

characteristic: lab description

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Mouse monoclonal IgG, raised against a.a. 1-300 mapping at the N-terminus of EBF of human origin. Antibody Target: EBF1

characteristic: antibody antibodydescription

text: Early B-cell factor 1. Transcriptional activator which recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3' (By similarity).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

text: Stanford_ChipSeq_GM12878_EBF1_(SC-137065)_std


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal raised against synthetic peptide representing a portion within the last 100 amino acids of the human Structural Maintenance of Chromosomes-3 conjugated to KLH. Antibody Target: SMC3

text: Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication.

text: Abcam

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM12878_SMC3_(ab9263)_IgG-mus

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal recognizing a region between residue 1800 and the C-terminus (residue 1863) of human Breast Cancer Gene 1. Antibody Target: BRCA1

characteristic: antibody antibodydescription

text: Nuclear phosphoprotein that plays a role in maintaining genomic stability, and acts as a tumor suppressor. Associates with RNA polymerase II, and through the C-terminal domain, also interacts with histone deacetylase complexes. Plays a role in transcription, DNA repair of double-stranded breaks, and recombination. Mutations in this gene are responsible for approximately 40% of inherited breast cancers and more than 80% of inherited breast and ovarian cancers.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Bethyl Labratories

characteristic: antibody vendorname

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

text: Stanford_ChipSeq_GM12878_BRCA1_(A300-000A)_IgG-mus

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal to CHD2 Synthetic peptide derived from within residues 1250 - 1350 of Human CHD2. Antibody Target: CHD2

text: CHD family of proteins are characterized by presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template.

text: Abcam

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM12878_CHD2_(AB68301)_IgG-mus

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: RAD21

characteristic: antibody antibodydescription

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: WiCell Research Institute

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse monoclonal. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2

text: Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3').

text: abcam

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: WiCell Research Institute

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal against RFX5 peptide corresponding to a region at amino acids 320 to 494 of the human protein conjugated to Keyhole Limpet Hemocyanin. Antibody Target: RFX5

characteristic: antibody antibodydescription

text: Activates transcription from class II MHC promoters. Recognizes X-boxes. Mediates cooperative binding betweenRFX and NF-Y. RFX binds the X1 box of MHC-II promoters

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Rockland Immunochemicals

characteristic: antibody vendorname

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_H1-hESC_RFX5_(200-401-194)_IgG-rab


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal against peptide conjugated to KLH derived from within residues 1600 - 1700 of S. cerevisiae RNA polymerase II CTD repeat YSPTSPS, phosphorylated at S2. Antibody Target: POL2S2

text: RNA polymerase II, large subunit- specific for phosphorylated C-terminal domain.

text: Abcam

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_HeLa-S3_Pol2(phosphoS2)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal raised against synthetic peptide representing a portion within the last 100 amino acids of the human Structural Maintenance of Chromosomes-3 conjugated to KLH. Antibody Target: SMC3

characteristic: antibody antibodydescription

text: Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HeLa-S3_SMC3_(ab9263)_IgG-rab


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Synthetic peptide conjugated to KLH derived from within residues 400 to the C-terminus of Human CoREST. Note: This antibody has since been discontinued. Full product information is attached as part of validation document. Antibody Target: COREST_(ab24166)

text: Essential component of the BHC complex, a corepressor complex that represses transcription of neuron-specific genes in non-neuronal cells. In the BHC complex, it serves as a molecular beacon for the recruitment of molecular machinery, including MeCP2 and SUV39H1, that imposes silencing across a chromosomal interval. Plays a central role in demethylation of Lys-4 of histone H3 by promoting demethylase activity of KDM1A on core histones and nucleosomal substrates.

text: Abcam

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_K562_COREST_(ab24166)_IgG-rab

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded. Data paired with GM12878_IgG_Control.

characteristic: labversion

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Coriell

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: treatment

text: Interferon gamma treatment - 30 minutes (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: RNA Polymerase II

text: Covance

text: Coriell

characteristic: cell

text: lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: remapped from hg18, Data paired with GM10847_IgG_Control.

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Illumina 2.0, low confidence sequences excluded

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of ATF3 of human origin. Antibody Target: ATF3

characteristic: antibody antibodydescription

text: Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NELFe

characteristic: antibody

text: NELFe (RDBP). Antibody Target: NELFe

characteristic: antibody antibodydescription

text: NELFe (RDBP) is a part of the negative elongation factor complex which binds to RNAPII to suppress elongation.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Lonza

text: HUVEC

characteristic: cell

text: umbilical vein endothelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: HUVEC

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal IgG, 200 ?g/ml. epitope mapping near the C-terminus of TFIIB of human origin. Antibody Target: GTF2B

characteristic: antibody antibodydescription

text: DNA- binding general transcription factor

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Fos

characteristic: antibody

text: Rabbit polyclonal to amino acids 210-335 mapping at the C-terminus of c-Fos of human origin. Antibody Target: c-Fos

characteristic: antibody antibodydescription

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

text: Santa Cruz Biotech

text: Struhl laboratory

characteristic: biomaterial provider

text: mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER)

text: normal

text: ectoderm

text: human

text: F

text: input library was prepared at Harvard.

text: ChipSeq

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Harvard_ChipSeq_MCF10A-Er-Src_4OHTAM_1uM_36hr_c-Fos_Harvard_Control

characteristic: title

characteristic: treatment

text: (To replace TAM_1uM_36hr) 36 h with 1 uM 4-hydroxytamoxifen (Myers)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: c-Fos

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Struhl laboratory

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: input library was prepared at Harvard.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens

characteristic: replicate

text: Harvard_ChipSeq_MCF10A-Er-Src_4OHTAM_1uM_4hr_c-Fos_Harvard_Control

text: 4 hours with 1 uM 4-hydroxytamoxifen dissolved in ethanol (Struhl)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Fos

characteristic: antibody

characteristic: antibody antibodydescription

text: Santa Cruz Biotech

text: Struhl laboratory

characteristic: biomaterial provider

text: normal

text: ectoderm

text: human

text: F

text: input library was prepared at Harvard.

text: ChipSeq

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Harvard_ChipSeq_MCF10A-Er-Src_4OHTAM_1uM_12hr_c-Fos_Harvard_Control

characteristic: title

characteristic: treatment

text: 12 hours with 1 uM 4-hydroxytamoxifen dissolved in ethanol (Struhl)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal; epitope mapping at the C-terminus of Stat3 of mouse origin. Antibody Target: STAT3

text: Member of STAT family. After phosphorylation in response to cytokines and growth factors (including IFNs, EGF, IL5, IL6, HGF, LIF and BMP2), forms homo- or heterodimers that translocate to nucleus and activate transcription. Activates expression of a variety of genes with roles in processes such as cell growth and apoptosis.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Struhl laboratory

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: control

text: input library was prepared at Harvard.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens

characteristic: replicate

text: Harvard_ChipSeq_MCF10A-Er-Src_4OHTAM_1uM_12hr_STAT3_Harvard_Control


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: E2F4

characteristic: antibody antibodydescription

text: mapping at the C-terminus of E2F4 of human origin

text: Santa Cruz Biotech

text: Struhl laboratory

characteristic: biomaterial provider

text: normal

text: ectoderm

text: human

text: F

text: input library was prepared at Harvard.

text: ChipSeq

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Harvard_ChipSeq_MCF10A-Er-Src_4OHTAM_1uM_36hr_E2F4_Harvard_Control

characteristic: title

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit Polyclonal. Antibody Target: P300

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal against peptide conjugated to KLH derived from within residues 1600 - 1700 of S. cerevisiae RNA polymerase II CTD repeat YSPTSPS, phosphorylated at S2. Antibody Target: POL2S2

characteristic: antibody antibodydescription

text: RNA polymerase II, large subunit- specific for phosphorylated C-terminal domain.

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_K562_Pol2(phosphoS2)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal. Raised against synthetic peptide: TTNPKPNKALKVKKEA conjugated to KLH by a C-terminal Cysteine residue linker, corresponding to amino acids 2-17 of Human MAFK. Antibody Target: MafK

text: NFE2 DNA-binding activity consists of a heterodimer containing an 18-kD Maf protein (MafF, MafG, or MafK) and p45. Both subunits are members of the activator protein-1 superfamily of basic leucine zipper (bZIP)proteins. Since they lack a putative transactivation domain, small Mafs behave as transcriptional repressors when they dimerize among themselves. They serve as transcriptional activators by dimerizing with other (usually larger) bZip proteins and recruiting them to specific DNA-binding sites.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_IMR90_MafK_(ab50322)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat polyclonal, epitope mapping near the C-terminus of CTCF of human origin. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: Transcriptional regulator with 11 highly conserved zinc finger domains. Depending on context, can bind a histone acetyltransferase (HAT)-containing complex and function as transcriptional activator or bind a histone deacetylase (HDAC)-containing complex and function as transcriptional repressor. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation. Can dimerize, mediating long-range chromatin looping. When bound to chromatin, provides an anchor point for nucleosomes positioning. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: normal

text: endoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_IMR90_CTCF_(SC-15914)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Max

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Max

characteristic: antibody

characteristic: antibody antibodydescription

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_K562_CTCF_(SC-15914)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NF-YB

characteristic: antibody

text: Affinity purified rabbit polyclonal raised against recombinant full length human NF-YB. Antibody Target: NF-YB

characteristic: antibody antibodydescription

text: NF-YB is the beta subunit of the trimeric NFY transcription factor complex that binds to the ubiquitous CCAAT motif

text: Donated by Dr. R. Mantovani, Universita degli Studi di Milano, Italy

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: c-Fos

text: Rabbit polyclonal to amino acids 210-335 mapping at the C-terminus of c-Fos of human origin. Antibody Target: c-Fos

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

text: Homo sapiens

characteristic: replicate

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

characteristic: antibody antibodydescription

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: c-Jun

text: Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal, epitope mapping at the C-terminus of NF-E2 of mouse origin and recommended for detection of protein of rat, mouse and human origin. Antibody Target: NF-E2

characteristic: antibody antibodydescription

text: Nuclear factor, erythroid-derived 2

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal anti-GCN5 antibody (2676), Immunogen : synthetic peptide coupled to Ovalbumin (sequence-MAEPSQAPTPAPAAQPRPLC). Antibody Target: GCN5

characteristic: antibody antibodydescription

text: KAT2A, or GCN5, is a histone acetyltransferase (HAT) that functions primarily as a transcriptional activator. Acetylation of histones gives a specific tag for epigenetic transcription activation. In case of HIV-1 infection, it is recruited by the viral protein Tat. Regulates Tat's transactivating activity and may help inducing chromatin remodeling of proviral genes. Component of the SAGA and ATAC complexes, complexes with histone acetyltransferase activities on histones H3 and H4

text: Laszlo Tora

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Rabbit Polyclonal anti-human ZZZ3, Immunogen: Synthetic peptide coupled to Ovalbumin (Name PI130, sequence CGNNNGRTTDLKQQSTRESW). Antibody Target: ZZZ3

text: ZZZ3 contains one ZZ-type zinc finger domain. ZZ type finger domains are named because of their ability to bind two zinc ions. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions -they are most likely involved in ligand binding or molecular scaffolding. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Lazlo Tora, Institut de G?n?tique et de Biologie Mol?culaire et Cellulaire

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal anti-SPT20 antibody (3006), Immunogen: C-terminal region of mSPT20 (330-531 aa) is cloned in pET28b and over expressed in E. Coli. Protein was purified on Ni-NTA exchange column. Sequence: mSPT20 (330-531 amino acids). Antibody Target: SPT20

characteristic: antibody antibodydescription

text: Also known as FAM48A or P38IP. It is a component of SAGA complex. Required for MAP kinase p38 (MAPK11, MAPK12, MAPK13 and/or MAPK14) activation during gastrulation. Required for down-regulation of E-cadherin during gastrulation by regulating E-cadherin protein level downstream from NCK-interacting kinase (NIK) and independently of the regulation of transcription by Fgf signaling and Snail.

text: Laszlo Tora

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Harvard

text: Struhl - Harvard University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: Input

characteristic: antibody description

text: Struhl laboratory

characteristic: cell

text: mammary gland, non-tumorigenic epithelial, inducible cell line, derived from the MCF-10A parental cells and contain ER-Src, a derivative of the Src kinase oncoprotein (v-Src) that is fused to the ligand-binding domain of the estrogen receptor (ER)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens

text: Harvard_ChipSeq_MCF10A-Er-Src_EtOH_0.01pct_4hr_Input_std

characteristic: treatment

text: 4 h with 0.01% Ethanol (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Interferon alpha treatment - 6 hours (Snyder)


text: ENCODE DCC

text: live

text: Generic

text: Input

characteristic: antibody description

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: Homo sapiens

characteristic: title

text: Interferon gamma treatment - 30 minutes (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

text: malignant pluripotent embryonal carcinoma (NTera-2), The NTERA-2 cl.D1 cell line is a pluripotent human testicular embryonal carcinoma cell line derived by cloning the NTERA-2 cell line. - ATCC. (PMID: 6694356)

text: cancer

text: inner cell mass

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

text: Homo sapiens

text: No special treatment or protocol applies


text: ENCODE DCC

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: treatment

text: 30 m of Interferon alpha (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: SUZ12

characteristic: antibody antibodydescription

text: Suppressor of zeste 12 homolog, Polycomb group (PcG) protein, Component of the PRC2/EED-EZH2 complex

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Antibody made by Farnham lab

characteristic: antibody vendorname

text: ATCC

text: cancer

text: inner cell mass

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: USC

text: Fragmented using Bioruptor, precipitated with StaphA

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: YY1

text: YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: PeakSeq1.0 (fdr 0.001)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal. Antibody Target: XRCC4

characteristic: antibody antibodydescription

text: Recognizes the XRCC4 protein (X ray cross complementation protein). XRCC4 is a ubiquitous protein reported to have a role in DNA double-stranded break repair and in V(D)J recombination.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: Contains incomplete fastq files

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

text: RNA Polymerase II

text: Covance

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: colorectal carcinoma (PMID: 7214343)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

characteristic: lab description

text: Fragmented using Bioruptor, precipitated with protein A agarose beads, PeakSeq 1.0 (fdr 0.001) Illumina 2.0, low confidence sequences excluded

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody description

text: ATCC

text: cancer

text: mesoderm

text: human

text: F

text: std

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: Homo sapiens

characteristic: title

characteristic: treatment

text: Interferon gamma treatment - 6 hours (Snyder)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: c-Myc

characteristic: antibody

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

characteristic: antibody antibodydescription

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

text: Snyder - Yale University

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: 30 m of Interferon alpha (Snyder)