text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Rabbit polyclonal, Sin3A (k-20). Antibody Target: SIN3AK20

characteristic: antibody antibodydescription

text: Co-repressor interacting with HDAC1, N-coR, SMRT, and MeCP2

text: Santa Cruz Biotechnology

text: ATCC

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol description

characteristic: replicate

text: MACS

text: HudsonAlpha_ChipSeq_HCT-116_Sin3Ak-20_v042211.1

characteristic: title

characteristic: treatment description


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of CEBPD of human origin. Antibody Target: CEBPD

text: The protein encoded by this intronless gene is a bZIP transcription factor which can bind as a homodimer to certain DNA regulatory regions. It can also form heterodimers with the related protein CEBP-alpha. The encoded protein is important in the regulation of genes involved in immune and inflammatory responses, and may be involved in the regulation of genes associated with activation and/or differentiation of macrophages. The cytogenetic location of this locus has been reported as both 8p11 and 8q11 (provided by RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotechnology

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: F

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_K562_CEBPD_(SC-636)_v042211.1

text: No special treatment or protocol applies


text: clinical/research

characteristic: IFSAC+ Category

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: EHEC

characteristic: Pathotype

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: ontological term

characteristic: serovar

characteristic: strain

text: Pathogen sample for Escherichia coli O103:H11 str. CFSAN001631

characteristic: title

characteristic: toxin


takifugu flavidus

characteristic: External Id

text: Institue of Oceanology,Chinese Academy of Sciences

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Takifugu flavidus

text: Takifugu flavidus, tawny pufferfish


text: IZB, University of Bern

text: live

text: Generic

text: Oxytricha trifallax

characteristic: organism

text: Oxytricha trifallax macronuclear DNA


text: University of Iowa

characteristic: INSDC center name

text: live

text: Generic

text: TFAP2C monoclonal antibody SC-12762X (Santa Cruz Biotechnology, Santa Cruz, CA)

characteristic: antibody

characteristic: cell line

text: pigmented melanoma

characteristic: cell type

text: Homo sapiens

text: TFAP2C ChIP A375


Beagle Reads

text: GlaxoSmithKline

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Canis lupus familiaris

text: Genome sequencing of the minipig and beagle animal models yields novel insights for drug discovery and development


text: UCSD-SCRM

text: live

text: Generic

text: Mammary epithelial cell

text: Homo sapiens

text: 3 to 4

characteristic: passage

text: wtCtrl (control)

text: wtCtrl (control)


text: UCSD-SCRM

text: live

text: Generic

text: Mammary epithelial cell

text: Homo sapiens

text: 3 to 4

text: wtYAP (YAP overexpression)

text: wtYAP (YAP overexpression)


text: UCSD-SCRM

text: live

text: Generic

text: Mammary epithelial cell

text: Homo sapiens

text: 3 to 4

text: shYAP (YAP knockdown)

text: shYAP (YAP knockdown)


text: CNRS - UPMC

text: live

text: Generic

text: G1 cells were isolated from an asynchronous population by centrifugal elutriation (Beckman: JE-5.0 Elutriator Rotor and Avanti J-26 XP centrifuge). Centrifugal elutriation is a technique for the separation of cells by velocity sedimentation (Pretlow et al., 1979). Asynchronous cells from an exponential culture in YPD were separated in different fractions. The fraction containing more than 95% of little G1 cells was centrifuged, washed and resuspend in YPD. Cells were synchronously released into S-phase at 23*C in YPD medium and one sample was taken every 10 minutes during 150 minutes. Genomic DNAs from 6 samples covering S phase (from 80 to 150 minutes) were extracted using the genomic-tip 20/G isolation kit (Qiagen).

characteristic: description

text: Lachancea kluyveri NRRL Y-12651

text: 2nd time of Lachancea kluyveri S-phase time-course experiment


text: ENCODE DCC

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: renal cell adenocarcinmoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: human

characteristic: cell organism

text: M

characteristic: cell sex

characteristic: controlid

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

characteristic: datatype description

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.1

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

text: ectoderm

characteristic: cell lineage

text: human

text: F

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.1

text: Homo sapiens

characteristic: organism

characteristic: treatment

text: 30 min with 10nM 7b-Estradiol (Crawford)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Kathleen Price Bryan Brain

characteristic: biomaterial provider

characteristic: cell

text: Primary ventromedial prefrontal cortex, from KPBBB donor IDs 673 (Rep B1) and 913 (Rep B2)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: controlid

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_female,p-value cutoff: 0.1

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: NICHD ; NICHD ; NICHD ; NCTC ; NICHD

text: Primary frozen kidney tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase), 1863 (Rep B3 FAIRE) and NCTC donor ID 10-0022A (Rep B1 FAIRE)

text: normal

text: human

text: B

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

characteristic: datatype description

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: Malignant Hepatic Rhabdoid tumor line

text: cancer

text: human

text: M

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

text: live

text: Generic

text: NCTC

characteristic: biomaterial provider

characteristic: cell

text: Primary frozen colon tissue from NCTC donor IDs 10-0005A (Rep B1) and 10-0170A (Rep B2), African American and caucasian

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: B

characteristic: cell sex

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

text: Malignant rhabdoid tumor (MRT) line, rhabdomyosarcoma

text: cancer

text: human

text: F

characteristic: controlid

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ATCC

text: Malignant renal rhabdoid tumor line

text: cancer

text: human

text: M

text: FaireSeq

text: FAIRE-seq Open Chromatin

characteristic: datatype description

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cancer

text: ectoderm

characteristic: cell lineage

text: human

text: F

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: Homo sapiens

characteristic: organism

text: vehicle

characteristic: treatment

text: Charcoal stripped hormone-free FBS for 72 hours (Crawford)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: NCTC

text: Primary frozen pancreas tissue from NCTC donor IDs 09-0144A (Rep B1) and 10-0021A (Rep B2)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: M

characteristic: cell sex

characteristic: controlid

text: FaireSeq

text: FAIRE-seq Open Chromatin

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: NCTC

text: Primary frozen small intestine tissue from NCTC donor IDs 10-0063A (Rep B1) and 09-0143A (Rep B2)

text: normal

text: human

text: M

text: FaireSeq

characteristic: datatype

text: FAIRE-seq Open Chromatin

characteristic: datatype description

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: title


characteristic: External Id

text: CNRS - UPMC

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

characteristic: description

text: Lachancea kluyveri NRRL Y-12651

characteristic: organism

text: 3rd time of Lachancea kluyveri S-phase time-course experiment


text: CNRS - UPMC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Lachancea kluyveri NRRL Y-12651

text: 4th time of Lachancea kluyveri S-phase time-course experiment


text: CNRS - UPMC

text: live

text: Generic

text: Lachancea kluyveri NRRL Y-12651

text: 5th time of Lachancea kluyveri S-phase time-course experiment


text: CNRS - UPMC

text: live

text: Generic

text: G1 cells were isolated from an asynchronous population by centrifugal elutriation (Beckman: JE-5.0 Elutriator Rotor and Avanti J-26 XP centrifuge). Centrifugal elutriation is a technique for the separation of cells by velocity sedimentation (Pretlow et al., 1979). Asynchronous cells from an exponential culture in YPD were separated in different fractions. The fraction containing more than 95% of little G1 cells was centrifuged, washed and resuspend in YPD. Cells were synchronously released into S-phase at 23*C in YPD medium and one sample was taken every 10 minutes during 150 minutes. Genomic DNAs from 6 samples covering S phase (from 80 to 150 minutes) were extracted using the genomic-tip 20/G isolation kit (Qiagen).

text: Lachancea kluyveri NRRL Y-12651

text: 6th time of Lachancea kluyveri S-phase time-course experiment


text: Ramaswamy, Center for Cancer Research, Massachusetts General Hospital

text: live

text: Generic

characteristic: blood draw

text: EPCAM CTC chip

characteristic: blood processed by

text: human breast cancer patient 1

characteristic: donor

text: Homo sapiens

text: blood

text: blood

characteristic: tissue

text: blood draw 1 from human breast cancer patient 1 processed by EPCAM CTC chip


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: IgG CTC chip

text: human breast cancer patient 1

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from human breast cancer patient 1 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: human breast cancer patient 1

text: Homo sapiens

text: blood

text: blood

text: blood draw 2 from human breast cancer patient 1 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: human breast cancer patient 1

text: Homo sapiens

text: blood

text: blood

text: blood draw 2 from human breast cancer patient 1 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: human breast cancer patient 1

text: Homo sapiens

text: blood

text: blood

text: blood draw 3 from human breast cancer patient 1 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: human breast cancer patient 1

text: Homo sapiens

text: blood

text: blood

text: blood draw 3 from human breast cancer patient 1 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: human breast cancer patient 1

text: Homo sapiens

text: blood

text: blood

text: blood draw 4 from human breast cancer patient 1 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: human breast cancer patient 1

text: Homo sapiens

text: blood

text: blood

text: blood draw 4 from human breast cancer patient 1 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: human breast cancer patient 1

text: Homo sapiens

text: blood

text: blood

text: blood draw 5 from human breast cancer patient 1 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: human breast cancer patient 1

text: Homo sapiens

text: blood

text: blood

text: blood draw 5 from human breast cancer patient 1 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: healthy human donor 1

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 1 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: healthy human donor 1

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 1 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: healthy human donor 2

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 2 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: healthy human donor 2

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 2 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: healthy human donor 3

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 3 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: healthy human donor 3

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 3 processed by IgG CTC chip


text: Ramaswamy, Center for Cancer Research, Massachusetts General Hospital

text: live

text: Generic

text: EPCAM CTC chip

text: healthy human donor 4

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 4 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: healthy human donor 4

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 4 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: healthy human donor 5

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 5 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: healthy human donor 5

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 5 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: healthy human donor 6

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 6 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: healthy human donor 6

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 6 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: healthy human donor 7

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 7 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: healthy human donor 7

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 7 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: healthy human donor 8

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 8 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: healthy human donor 8

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 8 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: healthy human donor 9

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 9 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: healthy human donor 9

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 9 processed by IgG CTC chip


text: live

text: Generic

text: EPCAM CTC chip

text: healthy human donor 10

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 10 processed by EPCAM CTC chip


text: live

text: Generic

text: IgG CTC chip

text: healthy human donor 10

text: Homo sapiens

text: blood

text: blood

text: blood draw 1 from healthy human donor 10 processed by IgG CTC chip


text: Stanford University

text: live

text: Generic

text: Table 1, Samples in each run. Run , Subject , Visit , Cell type , MID ; SRR747232 , 11 , V3 , PBMC , 33 ; SRR747232 , 25 , V1 , PBMC , 34 ; SRR747232 , 25 , V3 , PBMC , 35 ; SRR747232 , 29 , V1 , PBMC , 36 ; SRR747232 , 29 , V3 , PBMC , 37 ; SRR747232 , 11 , V1 , PBMC , 38 ; SRR747758 , 11 , V3 , PBMC , 33 ; SRR747758 , 25 , V1 , PBMC , 34 ; SRR747758 , 25 , V3 , PBMC , 35 ; SRR747758 , 29 , V1 , PBMC , 36 ; SRR747758 , 29 , V3 , PBMC , 37 ; SRR747758 , 11 , V1 , PBMC , 38 ; SRR747760 , 11 , V3 , PBMC , 33 ; SRR747760 , 25 , V1 , PBMC , 34 ; SRR747760 , 25 , V3 , PBMC , 35 ; SRR747760 , 29 , V1 , PBMC , 36 ; SRR747760 , 29 , V3 , PBMC , 37 ; SRR747760 , 11 , V1 , PBMC , 38 ; SRR747785 , 57 , V2 , NB , 57 ; SRR747785 , 57 , V2 , PB , 58 ; SRR747785 , 6 , V2 , NB , 59 ; SRR747785 , 6 , V2 , PB , 60 ; SRR747785 , 60 , V2 , NB , 2 ; SRR747785 , 60 , V2 , PB , 3 ; SRR747785 , 6 , V1 , PBMC , 4 ; SRR747785 , 6 , V3 , PBMC , 5 ; SRR747785 , 57 , V1 , PBMC , 6 ; SRR747785 , 57 , V3 , PBMC , 7 ; SRR747785 , 60 , V1 , PBMC , 8 ; SRR747785 , 60 , V3 , PBMC , 9 ; SRR747761 , 29 , V2 , NB , 13 ; SRR747761 , 29 , V2 , PB , 14 ; SRR747761 , 25 , V2 , PB , 15 ; SRR747761 , 11 , V2 , NB , 16 ; SRR747761 , 25 , V2 , NB , 17 ; SRR747761 , 11 , V2 , PB , 18 ; SRR747761 , 52 , V2 , NB , 19 ; SRR747761 , 52 , V2 , PB , 20 ; SRR747761 , 51 , V2 , NB , 21 ; SRR747761 , 51 , V2 , PB , 22 ; SRR747761 , 54 , V2 , NB , 23 ; SRR747761 , 54 , V2 , PB , 24 ; SRR747763 , 29 , V2 , NB , 13 ; SRR747763 , 29 , V2 , PB , 14 ; SRR747763 , 25 , V2 , PB , 15 ; SRR747763 , 11 , V2 , NB , 16 ; SRR747763 , 25 , V2 , NB , 17 ; SRR747763 , 11 , V2 , PB , 18 ; SRR747763 , 52 , V2 , NB , 19 ; SRR747763 , 52 , V2 , PB , 20 ; SRR747763 , 51 , V2 , NB , 21 ; SRR747763 , 51 , V2 , PB , 22 ; SRR747763 , 54 , V2 , NB , 23 ; SRR747763 , 54 , V2 , PB , 24 ; SRR747766 , 134 , V2 , NB , 10 ; SRR747766 , 93 , V2 , NB , 13 ; SRR747766 , 124 , V2 , NB , 16 ; SRR747766 , 133 , V2 , NB , 19 ; SRR747766 , 134 , V1 , PBMC , 22 ; SRR747766 , 134 , V3 , PBMC , 23 ; SRR747766 , 93 , V1 , PBMC , 24 ; SRR747766 , 93 , V3 , PBMC , 25 ; SRR747766 , 124 , V1 , PBMC , 26 ; SRR747766 , 124 , V3 , PBMC , 27 ; SRR747766 , 133 , V1 , PBMC , 28 ; SRR747766 , 133 , V3 , PBMC , 29 ; SRR747767 , 134 , V2 , PB , 11 ; SRR747767 , 93 , V2 , PB , 14 ; SRR747767 , 124 , V2 , PB , 17 ; SRR747767 , 133 , V2 , PB , 20 ; SRR747768 , 53 , V2 , PB , 46 ; SRR747768 , 58 , V2 , NB , 42 ; SRR747768 , 58 , V2 , PB , 43 ; SRR747768 , 58 , V1 , PBMC , 44 ; SRR747768 , 58 , V3 , PBMC , 1 ; SRR765688 , 43 , V1 , PBMC , 51 ; SRR765688 , 44 , V1 , PBMC , 53 ; SRR765688 , 43 , V3 , PBMC , 52 ; SRR765688 , 44 , V3 , PBMC , 54 ; SRR747768 , 53 , V2 , NB , 45 ; SRR747768 , 53 , V1 , PBMC , 55 ; SRR747768 , 53 , V3 , PBMC , 56 ; Table 2. Additional reads for IgG and IgM. Run , Subject , Visit , Cell type , MID ; SRR770500 , 53 , V2 , NB , 45 ; SRR770500 , 43 , V2 , NB , 47 ; SRR770500 , 43 , V2 , PB , 48 ; SRR770500 , 44 , V2 , NB , 49 ; SRR770500 , 44 , V2 , PB , 50 ; SRR770500 , 43 , V1 , PBMC , 51 ; SRR770500 , 43 , V3 , PBMC , 52 ; SRR770500 , 44 , V1 , PBMC , 53 ; SRR770500 , 44 , V3 , PBMC , 54 ; SRR770500 , 53 , V1 , PBMC , 55 ; SRR770500 , 53 , V3 , PBMC , 56 ; Table 3, MID sequencs used. MID , Sequence ; 1 , ACGAGTGCGT ; 2 , ACGCTCGACA ; 3 , AGACGCACTC ; 4 , AGCACTGTAG ; 5 , ATCAGACACG ; 6 , ATATCGCGAG ; 7 , CGTGTCTCTA ; 8 , CTCGCGTGTC ; 9 , TAGTATCAGC ; 10 , TCTCTATGCG ; 11 , TGATACGTCT ; 12 , TACTGAGCTA ; 13 , CATAGTAGTG ; 14 , CGAGAGATAC ; 15 , ATACGACGTA ; 16 , TCACGTACTA ; 17 , CGTCTAGTAC ; 18 , TCTACGTAGC ; 19 , TGTACTACTC ; 20 , ACGACTACAG ; 21 , CGTAGACTAG ; 22 , TACGAGTATG ; 23 , TACTCTCGTG ; 24 , TAGAGACGAG ; 25 , TCGTCGCTCG ; 26 , ACATACGCGT ; 27 , ACGCGAGTAT ; 28 , ACTACTATGT ; 29 , ACTGTACAGT ; 30 , AGACTATACT ; 31 , AGCGTCGTCT ; 32 , AGTACGCTAT ; 33 , ATAGAGTACT ; 34 , CACGCTACGT ; 35 , CAGTAGACGT ; 36 , CGACGTGACT ; 37 , TACACACACT ; 38 , TACACGTGAT ; 39 , TACAGATCGT ; 40 , TACGCTGTCT ; 41 , TAGTGTAGAT ; 42 , TCGATCACGT ; 43 , TCGCACTAGT ; 44 , TCTAGCGACT ; 45 , TCTATACTAT ; 46 , TGACGTATGT ; 47 , TGTGAGTAGT ; 48 , ACAGTATATA ; 49 , ACGCGATCGA ; 50 , ACTAGCAGTA ; 51 , AGCTCACGTA ; 52 , AGTATACATA ; 53 , AGTCGAGAGA ; 54 , AGTGCTACGA ; 55 , CGATCGTATA ; 56 , CGCAGTACGA ; 57 , CGCGTATACA ; 58 , CGTACAGTCA ; 59 , CGTACTCAGA ; 60 , CTACGCTCTA ;

text: Homo sapiens

text: Influenza vaccine immune repertoire


text: Stanford University

text: live

text: Generic

text: Human participant in influenza study. Vaccinated with TIV in 2009. Age group:18-30

text: Homo sapiens

text: influenza vaccine immune repertoire


text: Stanford University

text: live

text: Generic

text: Human participant in influenza study. Vaccinated with TIV in 2009. Age group:70-100

text: Homo sapiens

text: influenza vaccine immune repertoire


text: University of Utah

text: live

text: Generic

text: post natal week 10

characteristic: age

text: Mus musculus

text: heart

characteristic: strain

text: heart


characteristic: External Id

text: University of Utah

text: live

text: Generic

text: post natal week 10

text: Mus musculus

text: tibialis anterior muscle

text: tibialis anterior muscle

characteristic: title


text: Stanford University

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Human participant in influenza study. Vaccinated with TIV in 2009. Age group:8-17. This subject is twin with subject 017-052

text: Homo sapiens

text: influenza vaccine immune repertoire


text: Stanford University

text: live

text: Generic

text: Human participant in influenza study. Vaccinated with LAIV in 2009. Age group:8-17. This subject is twin with subject 017-051

characteristic: description

text: Homo sapiens

characteristic: organism

text: influenza vaccine immune repertoire


text: Stanford University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Human participant in influenza study. Vaccinated with LAIV in 2009. Age group:8-17. This subject is twin with subject 017-054

text: Homo sapiens

text: influenza vaccine immune repertoire


text: Stanford University

text: live

text: Generic

text: Human participant in influenza study. Vaccinated with TIV in 2009. Age group:8-17. This subject is twin with subject 017-053

text: Homo sapiens

text: influenza vaccine immune repertoire


text: Stanford University

text: live

text: Generic

text: Human participant in influenza study. Vaccinated with LAIV in 2009. Age group:8-17. This subject is twin with subject 017-058

text: Homo sapiens

text: influenza vaccine immune repertoire


text: Stanford University

text: live

text: Generic

text: Human participant in influenza study. Vaccinated with TIV in 2009. Age group:8-17. This subject is twin with subject 017-057

text: Homo sapiens

text: influenza vaccine immune repertoire


text: Stanford University

text: live

text: Generic

text: Human participant in influenza study. Vaccinated with LAIV in 2009. Age group:18-30

text: Homo sapiens

text: influenza vaccine immune repertoire


text: Bioinformatics, BGI-sz

text: live

text: Generic

text: Lasioglossum albipes

text: pooled RNA samles

text: whole body

text: Halictid


Nemurella pitetii

text: ITZ, Ecology & Evolution

text: live

text: Generic

text: adult

characteristic: dev-stage

text: Nemurella

characteristic: isolate

text: Nemurella pictetii

text: General Sample for Nemurella pictetii


Forficula auricularia

text: ITZ, Ecology & Evolution

text: live

text: Generic

text: adult

text: Forficula

text: Forficula auricularia

text: General Sample for Forficula auricularia


Zoraptera

text: ITZ, Ecology & Evolution

text: live

text: Generic

text: nymphs

text: Zoraptera

text: Zorotypus gurneyi

text: General Sample for Zoraptera


text: Laboratory of Genome and Epigenome Analysis, Center for iPS Cell Research and Application, Kyoto University

text: live

text: Generic

text: ES-derived neural progenitor like cells

characteristic: cell type

text: Monoclonal ANTI-FLAG M2, Clone M2 (SIGMA, F1804)

characteristic: chip antibody

text: Mus musculus

characteristic: passages

text: Neural progenitor like cells


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ES-derived neural progenitor like cells

text: Histone H3 dimethyl Lys4 antibody (ACTIVE MOTIF, 39141)

text: Mus musculus

text: Neural progenitor like cells


Geranium maderense

text: University of Texas at Austin

text: live

text: Generic

characteristic: NCBI submission package

text: This is the whole transcriptome sequencing for Geranium maderense

text: GMR

characteristic: label

text: Geranium maderense

text: General Sample for Geranium maderense


GER

characteristic: External Id

text: UTAustin

text: live

text: Generic

text: This is the Geranium maderense transcriptome data, extracted from whole RNA in the cell

text: Geranium maderense

text: Geranium maderense transcriptome

characteristic: title


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: human gut metagenome

characteristic: sample name

text: Generic sample from human gut metagenome


text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Generic

characteristic: collection date

text: Colon

characteristic: isolation source

text: human gut metagenome

characteristic: organism

text: Human

characteristic: specific host


text: Biomedical Informatics, the Ohio State University

characteristic: INSDC secondary accession

text: live

text: Generic

text: His6-biotin-tagged SUMO-1

characteristic: affinity tag in derived hela cells

text: HeLa Cells

characteristic: cell line

characteristic: growth phase

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-G1 rep1


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-G1 rep2


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-G1 rep3

characteristic: title


text: live

text: Generic

characteristic: SRA accession

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-S0 rep1


characteristic: INSDC first public

text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-S0 rep2


characteristic: INSDC last update

text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-S0 rep3


text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-S3 rep1


text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-S3 rep2


text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-S3 rep3


text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-S6 rep1


text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-S6 rep2


text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-S6 rep3


text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: M

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-M rep1


text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: M

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-M rep2


text: live

text: Generic

text: His6-biotin-tagged SUMO-1

text: HeLa Cells

text: M

text: Homo sapiens

text: HeLa Cells

text: ChAP SUMO1-M rep3


text: live

text: Generic

text: HeLa Cells

text: Homo sapiens

text: HeLa Cells

text: ChAP HeLa Input


text: live

text: Generic

text: HeLa Cells

characteristic: chip antibody

text: Homo sapiens

text: HeLa Cells

text: SUMO1- S0


text: live

text: Generic

text: HeLa Cells

text: IgG

text: Homo sapiens

text: HeLa Cells

text: IgG- S0


text: Cornell University

text: live

text: Generic

text: WT

characteristic: genotype

characteristic: label

text: Listeria monocytogenes 10403S

characteristic: strain


text: Cornell University

text: live

text: Generic

text: DeltasigBCH

text: Listeria monocytogenes C3-128

characteristic: organism


text: Cornell University

text: live

text: Generic

text: DeltasigBCHL

text: Listeria monocytogenes C3-135


text: Cornell University

text: live

text: Generic

text: DeltasigBCL

text: Listeria monocytogenes C3-137


text: Cornell University

text: live

text: Generic

text: DeltasigBHL

text: Listeria monocytogenes C3-138


text: Cornell University

text: live

text: Generic

text: DeltasigCHL

text: Listeria monocytogenes C3-139


Plasmodium inui San Antonio 1

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: collection date

text: China

text: blood

characteristic: isolation-source

text: Plasmodium inui San Antonio 1

text: Macaque

characteristic: specific host

text: San Antonio 1

text: Generic sample from Plasmodium inui San Antonio 1


Plasmodium falciparum UGT5.1

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Uganda: Tororo

text: blood

text: Plasmodium falciparum UGT5.1

text: Homo sapiens

text: Generic sample from Plasmodium falciparum UGT5.1


Plasmodium falciparum NF54

characteristic: External Id

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Netherlands

characteristic: isolate

text: blood

text: Plasmodium falciparum NF54

text: Homo sapiens

text: Generic sample from Plasmodium falciparum NF54


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: human gut metagenome

characteristic: sample name

characteristic: title


text: National Institute of Allergy and Infectious Diseases

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Staphylococcus aureus subsp. aureus USA300_FPR3757

text: Adaptive evolution of Staphylococcus aureus USA300 during colonization in community households


text: university medicine greifswald

text: live

text: Generic

characteristic: label

text: Homo sapiens

characteristic: organism

text: General Sample for Homo sapiens


Santo Domingo

text: Estacion Biologica Donana

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mexico: Santo Domingo Valley, Baja California Sur

characteristic: geo loc name

text: Santo Domingo

text: Phoradendron californicum

text: tissue sample

characteristic: sample-type

text: General Sample for Phoradendron californicum


text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: Generic

characteristic: collection date

text: Colon

characteristic: isolation source

text: human gut metagenome

text: Human

characteristic: specific host


PRJNA82111.Inf MGH103120

characteristic: External Id

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: Colon

text: human gut metagenome

text: Inf MGH103120

text: Human


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: Colon

text: human gut metagenome


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: human gut metagenome

characteristic: sample name

characteristic: title


PRJNA82111.Non MGH103121

text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Colon

text: human gut metagenome

characteristic: organism

text: Non MGH103121

text: Human


text: Australian National University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Hautoria isolated by percoll gradients. RNA-seq Illumina

characteristic: description

text: Puccinia striiformis f. sp. tritici


text: Australian National University

text: live

characteristic: INSDC status

text: Generic

text: Haustoria isolated by Percoll gradients. RNA-seq Illumina

text: Puccinia striiformis f. sp. tritici


text: Australian National University

text: live

text: Generic

text: Germinated spores RNA-seq Illumina

text: Puccinia striiformis f. sp. tritici


text: Australian National University

text: live

text: Generic

text: Germinated spores RNA-seq Illumina.

text: Puccinia striiformis f. sp. tritici


text: Australian National University

text: live

text: Generic

text: Haustoria isolated by ConA column and sequenced with 454

text: Puccinia striiformis f. sp. tritici


text: Australian National University

text: live

text: Generic

text: Germinated spores 15 hours RNA-seq with 454

text: Puccinia striiformis f. sp. tritici


text: School of Biotechnology and Biomolecular Science, University of New South Wales

text: live

text: Generic

text: Lacticaseibacillus rhamnosus LRHMDP2

characteristic: strain

text: Lactobacillus rhamnosus from initial stages of dental pulp infection


text: University Medicine Greifswald

text: live

text: Generic

text: Human fetal lung fibroblast cell line IMR91L (male) obtained from the Coriell Institute for Medical Research.

text: Homo sapiens


characteristic: GEO Accession

text: Gene Expression Omnibus

text: live

text: Generic

text: 1 cell

characteristic: cell count

text: Bone Marrow-derived Dendritic Cell (BMDC)

characteristic: cell type

text: source: BMDC (4h LPS stim)

text: Mus musculus

text: GSM1012777: Single cell S1

text: LPS-stimulation

characteristic: treatment


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 1 cell

text: source: BMDC (4h LPS stim)

text: Mus musculus

text: GSM1012778: Single cell S2

text: LPS-stimulation


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: 1 cell

text: source: BMDC (4h LPS stim)

text: Mus musculus

text: GSM1012779: Single cell S3

text: LPS-stimulation


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: 1 cell

text: source: BMDC (4h LPS stim)

text: Mus musculus

text: GSM1012780: Single cell S4

text: LPS-stimulation


text: Gene Expression Omnibus

text: live

text: Generic

text: 1 cell

text: source: BMDC (4h LPS stim)

text: Mus musculus

text: GSM1012781: Single cell S5

characteristic: title

text: LPS-stimulation


text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: 1 cell

text: source: BMDC (4h LPS stim)

text: Mus musculus

text: GSM1012782: Single cell S6

text: LPS-stimulation


text: Gene Expression Omnibus

text: live

text: Generic

text: 1 cell

text: source: BMDC (4h LPS stim)

text: Mus musculus

characteristic: organism

text: GSM1012783: Single cell S7

text: LPS-stimulation


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

text: 1 cell

text: source: BMDC (4h LPS stim)

text: Mus musculus

text: GSM1012784: Single cell S8

text: LPS-stimulation


text: Gene Expression Omnibus

text: live

text: Generic

text: 1 cell

text: source: BMDC (4h LPS stim)

characteristic: description

text: Mus musculus

text: GSM1012785: Single cell S9

text: LPS-stimulation


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

text: 1 cell

text: source: BMDC (4h LPS stim)

text: Mus musculus

text: GSM1012786: Single cell S10

text: LPS-stimulation


text: Gene Expression Omnibus

text: live

text: Generic

text: 1 cell

text: source: BMDC (4h LPS stim)

text: Mus musculus

characteristic: strain

text: GSM1012787: Single cell S11

text: LPS-stimulation


text: Aviv Regev, The Broad Institute, Broad Institute

text: live

text: Generic

text: 1 cell

text: Mus musculus

text: BMDC (4h LPS stim)

text: Single cell S12

text: LPS-stimulation


text: live

text: Generic

text: 1 cell

text: Mus musculus

text: BMDC (4h LPS stim)

text: Single cell S13

text: LPS-stimulation


text: live

text: Generic

text: 1 cell

text: Mus musculus

text: BMDC (4h LPS stim)

text: Single cell S14

text: LPS-stimulation


text: live

text: Generic

text: 1 cell

text: Mus musculus

text: BMDC (4h LPS stim)

text: Single cell S15

text: LPS-stimulation


text: live

text: Generic

text: 1 cell

text: Mus musculus

text: BMDC (4h LPS stim)

text: Single cell S16

text: LPS-stimulation


text: live

text: Generic

text: 1 cell

text: Mus musculus

text: BMDC (4h LPS stim)

text: Single cell S17

text: LPS-stimulation


text: live

text: Generic

text: 1 cell

text: Mus musculus

text: BMDC (4h LPS stim)

text: Single cell S18

text: LPS-stimulation


characteristic: GEO Accession

text: Gene Expression Omnibus

text: live

text: Generic

text: 10,000 cells

text: source: BMDC (4h LPS stim)

text: Mus musculus

text: GSM1012795: 10,000 cell population P1

text: LPS-stimulation


text: Gene Expression Omnibus

text: live

text: Generic

text: 10,000 cells

characteristic: cell count

text: source: BMDC (4h LPS stim)

text: Mus musculus

text: GSM1012796: 10,000 cell population P2

text: LPS-stimulation


text: Gene Expression Omnibus

text: live

text: Generic

text: 10,000 cells

characteristic: cell type

text: source: BMDC (4h LPS stim)

text: Mus musculus

text: GSM1012797: 10,000 cell population P3

text: LPS-stimulation


Arer - Archaeopsylla erinacei

text: Zoologisches Forschungsmuseum Alexander Koenig (ZFMK))

text: live

text: Generic

text: For RNA isolation, 47 complete specimens (adult) were used which had been sampled from 4 hedgehogs (leg. & det. K. Meusemann, R. Peters, November, 2011, Lohmar, Germany). Specimens were smashed and preserved in RNAlater, and stored at 4*C. RNA was isolated using a Trizol - GTI - LithiumChlorid approach. For the construction of the normalized cDNA library, mRNA was purified from 2-5 *g total RNA by exonuclease digestion followed by LiCl precipitation (mRNA-Only Eucaryotic mRNA Isolation Kit, Epicentre, Madison, WI, USA).

text: Archaeopsylla erinacei

text: Archaeopsylla erinacei


Mica - Micropterix calthella

text: live

text: Generic

text: For RNA isolation, 6 complete specimens (adult) were used (leg. & det. B. Misof, K. Meusemann, May 2011, Tomburg, near Bonn). The specimens were preserved in liquid nitrogen and stored at -80 *C prior to RNA isolation. RNA was isolated using a Trizol - GTI - LithiumChlorid approach. For the construction of the normalized cDNA library, mRNA was purified from 2-5 *g total RNA by exonuclease digestion followed by LiCl precipitation (mRNA-Only Eucaryotic mRNA Isolation Kit, Epicentre, Madison, WI, USA).

text: Micropterix calthella

text: Micropterix calthella


text: University of Colorado

text: live

text: Generic

text: anti-AGO monoclonal antibody 2A8

characteristic: antibody for clip

characteristic: cell line

text: Stromal Cell line

text: Homo sapiens

text: 5 to 8

characteristic: passage number


characteristic: External Id

text: University of Colorado

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: anti-AGO monoclonal antibody 2A8

text: n/a (primary)

text: Primary human umbilical vein endothelium

text: Homo sapiens

text: 1 to 2

text: HUVEC


text: University of Colorado

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: anti-AGO monoclonal antibody 2A8

text: n/a (primary)

text: Primary human marrow stromal cells (MSS)

text: Homo sapiens

text: 2 to 3

text: hMSC


text: University of Colorado

characteristic: INSDC last update

text: live

text: Generic

text: anti-AGO monoclonal antibody 2A8

text: TrHBMEC

text: Bone Marrow Endothelial Cell Line

text: Homo sapiens

characteristic: organism

text: TrHBMEC

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Shin Lin, Stanford University

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Autopsy

characteristic: collection method

text: Gastric tissue

characteristic: description

characteristic: donor age

text: Caucasian and African American

characteristic: donor ethnicity

text: healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)

characteristic: donor health status

characteristic: donor id

text: Male

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Gastric

characteristic: tissue type

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Shin Lin, Stanford University

text: Primary Tissue

text: Autopsy

text: Lung tissue

text: Caucasian and African American

text: Male

text: genomic DNA

text: Homo sapiens

text: Lung

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Shin Lin, Stanford University

characteristic: biomaterial provider

text: Primary Tissue

text: Autopsy

text: Psoas Muscle tissue

text: Caucasian and African American

text: Male

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Psoas Muscle

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

text: Shin Lin, Stanford University

text: Primary Tissue

characteristic: biomaterial type

text: Autopsy

characteristic: collection method

text: Right Ventricle tissue

characteristic: description

characteristic: donor age

text: Caucasian and African American

characteristic: donor ethnicity

characteristic: donor health status

text: Male

text: genomic DNA

text: Homo sapiens

text: Right Ventricle

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: Shin Lin, Stanford University

text: Primary Tissue

text: Autopsy

text: Adrenal Gland tissue

text: iron deficiency, bipolar

characteristic: disease

text: Caucasian

text: iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)

characteristic: donor id

text: Female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Adrenal Gland

characteristic: tissue type

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Shin Lin, Stanford University

text: Primary Tissue

text: Autopsy

text: Aorta tissue

text: iron deficiency, bipolar

text: Caucasian

text: Female

text: genomic DNA

text: Homo sapiens

text: Aorta

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: Shin Lin, Stanford University

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Autopsy

characteristic: collection method

text: Esophagus tissue

characteristic: description

text: iron deficiency, bipolar

characteristic: donor age

text: Caucasian

text: Female

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Esophagus

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: Shin Lin, Stanford University

text: Primary Tissue

text: Autopsy

text: Gastric tissue

text: iron deficiency, bipolar

characteristic: disease

text: Caucasian

characteristic: donor ethnicity

characteristic: donor health status

characteristic: donor id

text: Female

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

text: Gastric

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Shin Lin, Stanford University

text: Primary Tissue

text: Autopsy

text: Pancreas tissue

text: iron deficiency, bipolar

text: Caucasian

text: Female

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Pancreas

characteristic: tissue type

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Shin Lin, Stanford University

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Autopsy

characteristic: collection method

text: Psoas Muscle tissue

characteristic: description

text: iron deficiency, bipolar

characteristic: donor age

text: Caucasian

text: Female

text: genomic DNA

text: Homo sapiens

text: Psoas Muscle

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: Shin Lin, Stanford University

text: Primary Tissue

text: Autopsy

text: Small Intestine tissue

text: iron deficiency, bipolar

characteristic: disease

text: Caucasian

characteristic: donor ethnicity

characteristic: donor health status

text: Female

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Small Intestine

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Shin Lin, Stanford University

text: Primary Tissue

text: Autopsy

text: Spleen tissue

text: iron deficiency, bipolar

text: Caucasian

characteristic: donor id

text: Female

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

text: Spleen

text: Generic sample from Homo sapiens


text: Zhiping Weng, Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Drosophila melanogaster

text: UAP-Venus

characteristic: rip antibody

text: UAP-Venus expressed

characteristic: strain

text: ovary

characteristic: tissue


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Drosophila melanogaster

text: UAP-Venus expressed

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: UAP-Venus

text: sz-Venus expressed

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: sz-Venus expressed

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: UAP-Venus

text: ovary


text: live

text: Generic

text: Drosophila melanogaster

text: ovary


text: wuhan institute of virology

text: live

text: Generic

text: bat kidney cell

characteristic: cell type

text: bat adenovirus

characteristic: infected with

text: Myotis davidii

text: bat kidney cells_BtAdV-0h

characteristic: time point


text: wuhan institute of virology

characteristic: INSDC first public

text: live

text: Generic

text: bat kidney cell

text: bat adenovirus

text: Myotis davidii

characteristic: organism

text: bat kidney cells_BtAdV-6h

characteristic: title


text: wuhan institute of virology

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: bat kidney cell

text: bat adenovirus

text: Myotis davidii

text: bat kidney cells_BtAdV-8h


text: wuhan institute of virology

text: live

text: Generic

characteristic: NCBI submission model

text: bat kidney cell

text: bat adenovirus

text: Myotis davidii

text: bat kidney cells_BtAdV-12h


text: wuhan institute of virology

text: live

text: Generic

characteristic: NCBI submission package

text: bat kidney cell

text: bat adenovirus

text: Myotis davidii

text: bat kidney cells_BtAdV-18h


text: Teagasc

text: live

text: Generic

characteristic: SRA accession

text: Avanticell

characteristic: biomaterial provider

text: Mammary epithelial cell

text: none (uninfected control)

characteristic: challenged with

text: miRNA

characteristic: molecule subtype

text: Bos taurus

text: CB1_1 hr control

text: 1 hour

characteristic: timepoint

text: mammary parenchyma

characteristic: tissue source

text: 1 hour control (replicate 1)


characteristic: External Id

text: Teagasc

characteristic: INSDC center name

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

characteristic: cell type

text: none (uninfected control)

text: miRNA

text: Bos taurus

text: CB2_1 hr control

text: 1 hour

text: mammary parenchyma

text: 1 hour control (replicate 2)


text: Teagasc

characteristic: INSDC first public

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: none (uninfected control)

text: miRNA

text: Bos taurus

text: CB3_1 hr control

text: 1 hour

text: mammary parenchyma

text: 1 hour control (replicate 3)


text: Teagasc

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

characteristic: organism

text: IB1_1 hr infected

text: 1 hour

text: mammary parenchyma

text: 1 hour infected (replicate 1)


text: Teagasc

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

text: IB2_1 hr infected

text: 1 hour

text: mammary parenchyma

text: 1 hour infected (replicate 2)

characteristic: title


text: Teagasc

characteristic: INSDC last update

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

text: IB3_1 hr infected

text: 1 hour

text: mammary parenchyma

text: 1 hour infected (replicate 3)


text: Teagasc

characteristic: INSDC secondary accession

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: none (uninfected control)

text: miRNA

text: Bos taurus

text: CC1_2 hr control

text: 2 hour

text: mammary parenchyma

text: 2 hour control (replicate 1)


text: Teagasc

text: live

characteristic: INSDC status

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: none (uninfected control)

text: miRNA

text: Bos taurus

text: CC2_2 hr control

text: 2 hour

text: mammary parenchyma

text: 2 hour control (replicate 2)


text: Teagasc

text: live

text: Generic

characteristic: NCBI submission model

text: Avanticell

text: Mammary epithelial cell

text: none (uninfected control)

text: miRNA

text: Bos taurus

text: CC3_2 hr control

text: 2 hour

text: mammary parenchyma

text: 2 hour control (replicate 3)


text: Teagasc

text: live

text: Generic

characteristic: NCBI submission package

text: Avanticell

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

text: IC1_2 hr infected

text: 2 hour

text: mammary parenchyma

text: 2 hour infected (replicate 1)


text: Teagasc

text: live

text: Generic

characteristic: SRA accession

text: Avanticell

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

text: IC2_2 hr infected

text: 2 hour

text: mammary parenchyma

text: 2 hour infected (replicate 2)


text: Teagasc

text: live

text: Generic

text: Avanticell

characteristic: biomaterial provider

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

text: IC3_2 hr infected

text: 2 hour

text: mammary parenchyma

text: 2 hour infected (replicate 3)


text: Teagasc

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: none (uninfected control)

characteristic: challenged with

text: miRNA

text: Bos taurus

text: CD1_4 hr control

text: 4 hour

text: mammary parenchyma

text: 4 hour control (replicate 1)


text: Teagasc

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: none (uninfected control)

text: miRNA

characteristic: molecule subtype

text: Bos taurus

text: CD2_4 hr control

text: 4 hour

text: mammary parenchyma

text: 4 hour control (replicate 2)


text: Teagasc

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: none (uninfected control)

text: miRNA

text: Bos taurus

text: CD3_4 hr control

text: 4 hour

characteristic: timepoint

text: mammary parenchyma

text: 4 hour control (replicate 3)


text: Teagasc

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

text: ID1_4 hr infected

text: 4 hour

text: mammary parenchyma

characteristic: tissue source

text: 4 hour infected (replicate 1)


characteristic: External Id

text: Teagasc

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

text: ID2_4 hr infected

text: 4 hour

text: mammary parenchyma

text: 4 hour infected (replicate 2)


text: Teagasc

characteristic: INSDC center name

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

text: ID3_4 hr infected

text: 4 hour

text: mammary parenchyma

text: 4 hour infected (replicate 3)


text: Teagasc

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

characteristic: cell type

text: none (uninfected control)

text: miRNA

text: Bos taurus

text: CE1_6 hr control

text: 6 hour

text: mammary parenchyma

text: 6 hour control (replicate 1)


text: Teagasc

characteristic: INSDC first public

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: none (uninfected control)

text: miRNA

text: Bos taurus

text: CE2_6 hr control

text: 6 hour

text: mammary parenchyma

text: 6 hour control (replicate 2)


text: Teagasc

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: none (uninfected control)

text: miRNA

text: Bos taurus

characteristic: organism

text: CE3_6 hr control

text: 6 hour

text: mammary parenchyma

text: 6 hour control (replicate 3)


text: Teagasc

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

text: IE1_6 hr infected

text: 6 hour

text: mammary parenchyma

text: 6 hour infected (replicate 1)

characteristic: title


text: Teagasc

characteristic: INSDC last update

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

text: IE2_6 hr infected

text: 6 hour

text: mammary parenchyma

text: 6 hour infected (replicate 2)


text: Teagasc

characteristic: INSDC secondary accession

text: live

text: Generic

text: Avanticell

text: Mammary epithelial cell

text: S. uberis 0140J at MOI of 50

text: miRNA

text: Bos taurus

text: IE3_6 hr infected

text: 6 hour

text: mammary parenchyma

text: 6 hour infected (replicate 3)


text: Cancer Science Institute of Singapore, National University of Singapore

text: live

characteristic: INSDC status

text: Generic

characteristic: cell line

text: Homo sapiens

text: Total RNA

characteristic: rna fraction

text: Myeloid Leukemia

text: Total RNA


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

text: Non-polyadenylated RNA

text: Myeloid Leukemia

text: Total RNA polyA(-)


text: Institute for Genome Sciences University of MD School of Medicine

text: live

characteristic: LabPH

text: Generic

text: Generic

characteristic: biosamplemodel

text: yes

characteristic: hiv

text: human metagenome

characteristic: patient

text: no

characteristic: pid

text: African American

characteristic: race

text: human metagenome 215706

characteristic: visit


characteristic: External Id

text: University of Zürich

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: planktonic cells

characteristic: cell type

text: wt

characteristic: genotype/variation

text: complex medium LB

characteristic: medium

text: Burkholderia cenocepacia H111

characteristic: organism

text: Bc H111 planktonic cells

characteristic: strain

text: H111 wt


text: University of Zürich

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: planktonic cells

text: rpfF mutant

text: complex medium LB

text: Burkholderia cenocepacia H111

text: Bc H111 planktonic cells

text: H111 bdsf mutant

characteristic: title


text: University of Zürich

text: live

text: Generic

characteristic: SRA accession

text: planktonic cells

text: rpfF mutant complemented with BDSF

text: complex medium LB

text: Burkholderia cenocepacia H111

text: Bc H111 planktonic cells

text: H111 bdsf complemented mutant


text: Stanford University

text: live

text: Generic

text: breast tumor initiating cells (TICs)

text: Mus musculus

text: breast tumor initiating cells (TICs)

text: FVB

text: TIC RNA-seq


text: Stanford University

text: live

text: Generic

text: non-tumorigenic cells (NTCs)

text: Mus musculus

text: non-tumorigenic cells (NTCs)

text: FVB

text: NTC RNA-seq


text: Stanford University

text: live

text: Generic

text: strand-specific RNA-seq library was generated and sequenced with Illumina Hiseq 2000

characteristic: description

text: Homo sapiens

text: RNAseq of LIM2405 Human Colon Cancer Cell Line


KATOIII

text: Stanford University

text: live

text: Generic

text: Homo sapiens

text: RNAseq of KATO III, human gastric carcinoma cell line


text: Stanford University

text: live

text: Generic

text: Homo sapiens

text: RNAseq of LIM1899, Human colorectal carcinoma cell line


text: Institute for Genomics & Systems Biology, Department of Human Genetics, The University of Chicago

text: live

text: Generic

text: anti-AGO2 (a custom rabbit polyclonal antibody generated with the following peptide: MYS GAG PVL ASP APT TSP IPG YAFKC)

characteristic: antibody

text: CD4+ T cells [activated]

text: miR-155 KO

text: Mus musculus

text: In vitro activated CD4+ T cells from spleen and lymph nodes

text: CD4+ T cells, 155KO, biological rep1


characteristic: External Id

text: live

text: Generic

text: CD4+ T cells [activated]

text: miR-155 KO

text: Mus musculus

text: CD4+ T cells, 155KO, biological rep2


characteristic: INSDC center name

text: live

text: Generic

text: CD4+ T cells [activated]

text: miR-155 KO

text: Mus musculus

text: CD4+ T cells, 155KO, biological rep3


characteristic: INSDC first public

text: live

text: Generic

text: CD4+ T cells [activated]

text: miR-155 KO

text: Mus musculus

text: CD4+ T cells, 155KO, biological rep4


text: live

text: Generic

text: CD4+ T cells [activated]

characteristic: cell type

text: miR-155 KO

text: Mus musculus

text: CD4+ T cells, 155KO, biological rep5


text: live

text: Generic

text: CD4+ T cells [activated]

text: miR-155 KO

characteristic: genotype/variation

text: Mus musculus

text: CD4+ T cells, 155KO, biological rep6


text: live

text: Generic

text: CD4+ T cells [activated]

text: miR-155 KO

text: Mus musculus

text: CD4+ T cells, 155KO, biological rep7


text: live

text: Generic

text: CD4+ T cells [activated]

text: miR-155 KO

text: Mus musculus

text: CD4+ T cells, 155KO, biological rep8


text: live

text: Generic

text: CD4+ T cells [activated]

text: miR-155 KO

text: Mus musculus

text: CD4+ T cells, 155KO, biological rep9


text: live

text: Generic

text: CD4+ T cells [activated]

text: miR-155 KO

text: Mus musculus

text: CD4+ T cells, 155KO, biological rep10


text: live

text: Generic

text: CD4+ T cells [activated]

text: miR-155 KO

text: Mus musculus

text: CD4+ T cells, 155KO, biological rep11


text: live

text: Generic

text: CD4+ T cells [activated]

text: miR-155 KO

text: Mus musculus

text: CD4+ T cells, 155KO, biological rep12


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep1


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep2


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep3


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep4


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep5


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep6


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep7


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep8


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep9


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep10


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep11


text: live

text: Generic

text: CD4+ T cells [activated]

text: WT

text: Mus musculus

text: CD4+ T cells, WT, biological rep12


text: Stanford University

text: live

text: Generic

text: Homo sapiens

text: RNAseq of SNU16, human gastric carcinoma cell line


text: Stanford University

text: live

text: Generic

text: Homo sapiens

text: RNAseq of SUM149, human breast cancer cell line


text: Stanford University

text: live

text: Generic

text: Homo sapiens

text: RNAseq of SUM191, human breast Cancer cell line


text: Kay, Pediatrics, Stanford University

text: live

text: Generic

text: HEK293 cell lines

text: Homo sapiens

characteristic: passages


text: Kay, Pediatrics, Stanford University

text: live

text: Generic

text: MEF cell lines

text: Mus musculus

characteristic: organism


text: Kay, Pediatrics, Stanford University

text: live

text: Generic

text: HEK293 cell lines

text: Anti-FLAG (Sigma #A2220)

characteristic: ip antibody

text: Homo sapiens


text: Kay, Pediatrics, Stanford University

characteristic: INSDC last update

text: live

text: Generic

text: HEK293 cell lines

text: Homo sapiens

text: synthetic sh_miR_30

text: synthetic sh_miR_30


text: Kay, Pediatrics, Stanford University

characteristic: INSDC secondary accession

text: live

text: Generic

text: MEF cell lines

text: Mus musculus

text: synthetic sh_miR_30_repeat

text: synthetic sh_miR_30_repeat


text: Kay, Pediatrics, Stanford University

text: live

characteristic: INSDC status

text: Generic

text: HEK293 cell lines

text: Anti-FLAG (Sigma #A2220)

text: Homo sapiens

text: synthetic sh_miR_30_Ago2_IP

text: synthetic sh_miR_30_Ago2_IP


text: Kay, Pediatrics, Stanford University

text: live

text: Generic

characteristic: NCBI submission model

text: MEF cell lines

text: Anti-FLAG (Sigma #A2220)

text: Mus musculus

text: synthetic sh_miR_30_Ago2_IP_repeat

text: synthetic sh_miR_30_Ago2_IP_repeat


text: Kay, Pediatrics, Stanford University

text: live

text: Generic

characteristic: NCBI submission package

text: HEK293 cell lines

text: Homo sapiens

text: sh_miR_30 variants

text: sh_miR_30 variants


text: Kay, Pediatrics, Stanford University

text: live

text: Generic

text: HEK293 cell lines

text: Homo sapiens

text: sh_HCV variants

text: sh_HCV variants

characteristic: title


text: Kay, Pediatrics, Stanford University

text: live

text: Generic

characteristic: SRA accession

text: MEF cell lines

text: Mus musculus

text: sh_HCV variants_repeat

text: sh_HCV variants_repeat


text: Kay, Pediatrics, Stanford University

text: live

text: Generic

text: HCT cell line

text: Homo sapiens


text: Kay, Pediatrics, Stanford University

text: live

text: Generic

text: HCT Dicer mutant cell line

text: Homo sapiens


text: Bioinformatics Shared Resource, Huntsman Cancer Institute / University of Utah

text: live

text: Generic

text: Mus musculus

text: osteosarcoma

text: osteosarcoma

characteristic: tissue


text: live

text: Generic

text: Mus musculus

text: Clear Cell from Rosa26CreER

text: Clear Cell from Rosa26CreER


text: live

text: Generic

text: Mus musculus

text: synovial sarcoma

text: synovial sarcoma


text: live

text: Generic

text: Mus musculus

text: Clear Cell from TATCre

text: Clear Cell from TATCre


text: live

text: Generic

text: Mus musculus

text: Control

text: Control


text: live

text: Generic

text: Mus musculus

text: Clear Cell from Prx1CreERT2

text: Clear Cell from Prx1CreERT2


text: live

text: Generic

text: Mus musculus

text: Clear Cell from Bmi1IRESCreERT2

text: Clear Cell from Bmi1IRESCreERT2


pooled human epidermis microbial DNA

text: dnavision

text: live

text: Generic

text: skin

characteristic: biome

text: epidermis

characteristic: body site

characteristic: collection date

text: Pooled bacterial 16S DNA isolated from human epidermis

characteristic: description

text: Netherlands

characteristic: geo loc name

text: skin microbiota

characteristic: isolate

text: epidermis

characteristic: isolation-source

text: human skin metagenome

text: Homo sapiens

characteristic: specific host

text: General Sample for pooled bacterial DNA


characteristic: External Id

text: School of Biotechnology and Biomolecular Science, University of New South Wales

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Lacticaseibacillus rhamnosus LRHMDP3

characteristic: organism

characteristic: strain

text: 454 genomic sequencing reads for LRHMDP3


text: Hubrecht Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Adult

characteristic: developmental stage

text: female

characteristic: gender

text: Danio rerio

text: Ovary

text: SJD

text: Ovary

text: SJD P0


text: Hubrecht Institute

text: live

text: Generic

characteristic: SRA accession

text: Adult

text: female

text: Danio rerio

text: Ovary

text: SJD

text: Ovary

characteristic: tissue

text: SJD P0 Individual 1

characteristic: title


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: SJD

text: Ovary

text: SJD P0 Individual 2


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Hybrid SJD and Tu

text: Ovary


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Hybrid SJD and Tu

text: Ovary

text: SJDxTuF1 Individual 1


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Hybrid SJD and Tu

text: Ovary

text: SJDxTuF1 Individual 2


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Hybrid SJD and Tu

text: Ovary

text: SJDxTuF2 Individual 1


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Hybrid SJD and Tu

text: Ovary

text: SJDxTuF2 Individual 2


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Tu

text: Ovary

text: Tu P0


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Tu

text: Ovary

text: Tu P0 Individual 1


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Tu

text: Ovary

text: Tu P0 Individual 2


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Hybrid SJD and Tu

text: Ovary

text: TuxSJDF1 Individual 1


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Hybrid SJD and Tu

text: Ovary

text: TuxSJDF1 Individual 2


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Hybrid SJD and Tu

text: Ovary

text: TuxSJDF2 Individual 1


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: female

text: Danio rerio

text: Ovary

text: Hybrid SJD and Tu

text: Ovary

text: TuxSJDF2 Individual 2


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: male

text: Danio rerio

text: Testes

text: Tu

text: Testes

text: Tu Male


text: Hubrecht Institute

text: live

text: Generic

text: Adult

text: male

text: Danio rerio

text: Testes

text: SJD

text: Testes

text: SJD male


text: Daniel Zilberman, Plant and Microbial Biology, University of California at Berkeley

text: live

text: Generic

text: shoots 2 weeks

characteristic: ecotype

text: methylase

characteristic: function

characteristic: genotype

text: Arabidopsis thaliana

text: AT shoots 2 weeks Columbia-0


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: roots 3 weeks

text: Arabidopsis thaliana

text: AT roots 3 weeks Columbia-0


characteristic: GEO Accession

text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: source: AT shoots 3 weeks Columbia-0

characteristic: description

text: shoots 3 weeks

text: Arabidopsis thaliana

characteristic: organism

text: GSM1014118: ddm1drd1


text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: source: AT shoots 3 weeks Columbia-0

text: shoots 3 weeks

text: Arabidopsis thaliana

text: GSM1014119: ddm1rdr2


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: roots 3 weeks

characteristic: developmental stage

text: methylase/RdDM

text: Arabidopsis thaliana

text: AT roots 3 weeks Columbia-0


text: live

text: Generic

characteristic: SRA accession

text: roots 3 weeks

text: methylase

text: Arabidopsis thaliana

text: AT roots 3 weeks Columbia-0


text: live

text: Generic

text: roots 3 weeks

text: RdDM

text: Arabidopsis thaliana

text: AT roots 3 weeks Columbia-0

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

text: source: AT roots 3 weeks Columbia-0

text: roots 3 weeks

characteristic: ecotype

text: wt

text: Arabidopsis thaliana

text: GSM1014124: wt_roots


text: Gene Expression Omnibus

text: live

text: Generic

text: source: AT shoots 2 weeks Columbia-0

text: shoots 2 weeks

text: wt

text: Arabidopsis thaliana

text: GSM1014125: wt_shoots


text: Gene Expression Omnibus

text: live

text: Generic

text: source: AT roots 3 weeks Columbia-0

text: roots 3 weeks

text: wt

text: Arabidopsis thaliana

text: GSM1014126: MNase


text: Gene Expression Omnibus

text: live

text: Generic

text: source: AT roots 3 weeks Columbia-0

text: roots 3 weeks

text: Arabidopsis thaliana

text: GSM1014127: ddm1_drd1


text: Gene Expression Omnibus

text: live

text: Generic

text: source: AT roots 3 weeks Columbia-0

text: roots 3 weeks

characteristic: function

text: Arabidopsis thaliana

text: GSM1014128: ddm1_exp1


text: Gene Expression Omnibus

text: live

text: Generic

text: source: AT roots 3 weeks Columbia-0

text: roots 3 weeks

characteristic: genotype

text: Arabidopsis thaliana

text: GSM1014129: ddm1_exp2


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: source: AT roots 3 weeks Columbia-0

text: roots 3 weeks

text: methylase/RdDM

text: Arabidopsis thaliana

text: GSM1014130: drd1_exp1


text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: source: AT roots 3 weeks Columbia-0

text: roots 3 weeks

text: methylase/RdDM

text: Arabidopsis thaliana

text: GSM1014131: drd1_exp2


characteristic: GEO Accession

text: Gene Expression Omnibus

text: live

text: Generic

text: source: AT roots 3 weeks Columbia-0

text: roots 3 weeks

text: methylase

text: Arabidopsis thaliana

text: GSM1014132: met1_exp1


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: source: AT roots 3 weeks Columbia-0

text: roots 3 weeks

text: methylase

text: Arabidopsis thaliana

text: GSM1014133: met1_exp2


text: Gene Expression Omnibus

text: live

text: Generic

text: source: AT roots 3 weeks Columbia-0

characteristic: description

text: roots 3 weeks

text: wt

text: Arabidopsis thaliana

text: GSM1014134: wt_exp1


text: Gene Expression Omnibus

text: live

text: Generic

text: source: AT roots 3 weeks Columbia-0

text: roots 3 weeks

text: wt

text: Arabidopsis thaliana

characteristic: organism

text: GSM1014135: wt_exp2


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: Stam lab

characteristic: biomaterial provider

text: TReg

characteristic: cell

text: Regulatory T cells CD4+,CD25+

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW-m

characteristic: lab

text: Stamatoyannopoulous - University of Washington

characteristic: lab description

characteristic: labexpid

text: 1,Hotspot-v5.2,Hotspot-v5.1,lmax-v1.1,WindowDensity-bin20-win+/-75

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: TReg

characteristic: strain

text: C57 black 6, the most common inbred strain of laboratory mouse

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Adult 8 weeks

text: Stam lab

text: THelper-Activated

text: Activated primary CD4 effector cells, isolated ex vivo

text: mouse

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

text: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75

text: Mus musculus

characteristic: organism

text: THelper-Activated

text: UW_DnaseSeq_THelper-Activated_adult-8wks_C57BL/6

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Dr. Levasseur (University of Iowa)

characteristic: biomaterial provider

characteristic: cell

text: Undifferentiated mouse embryonic stem cells

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW-m

characteristic: lab

characteristic: lab description

text: Mus musculus

text: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.

text: UW_DnaseSeq_ZhBTc4_E0_diffProtB_6hr_129/Ola

characteristic: treatment

text: Oct4 repression with Doxycycline in ZhBTc4 ES cell culture harvested at 6 hours. Doxycycline added to a final concentration of 100 ng/ml. (Stam)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Adult 8 weeks

text: 1)Stam lab; 2)CSHL lab

text: WholeBrain

text: Whole Brain

text: mouse

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

text: 1,Hotspot-v5.1,lmax-v1.0,lmax-v1.1,WindowDensity-bin20-win+/-75

characteristic: labversion

text: Mus musculus

characteristic: replicate

text: WholeBrain

characteristic: strain

characteristic: strain description

text: UW_DnaseSeq_WholeBrain_adult-8wks_C57BL/6


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Dr. Levasseur (University of Iowa)

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW-m

characteristic: labexpid

text: Mus musculus

characteristic: organism

text: UW_DnaseSeq_ZhBTc4_E0_diffProtB_24hr_129/Ola

characteristic: title

text: Oct4 repression with Doxycycline in ZhBTc4 ES cell culture harvested at 24 hours. Doxycycline added to a final concentration of 100 ng/ml (Stam)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: immortalized

text: Weissman lab

text: immortalized cell line

characteristic: biomaterial type

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

characteristic: lab

characteristic: lab description

characteristic: labversion

characteristic: line

text: Mus musculus

text: Derived by inbreeding from selected F2 progeny of B10.A X B10.129

text: UW_DnaseSeq_CH12_immortalized_B10.H-2aH-4bp/Wts


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Santos lab

characteristic: biomaterial provider

text: mouse embryonic stem cells

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW-m

text: Mus musculus

characteristic: replicate

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Embryonic day 14.5

text: M. Bender, R. Byron (Fred Hutchinson Cancer Research Center)

characteristic: cell

text: liver fraction CD117+,CD71-,TER119-

characteristic: cell description

text: mouse

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

characteristic: labexpid

text: Mus musculus

characteristic: organism

text: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.

text: UW_DnaseSeq_EPC_(CD117+,CD71-,TER119-)_E14.5_CD-1

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

characteristic: biomaterial provider

text: liver fraction CD117-,CD71+,TER119+

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW-m

characteristic: lab

text: Stamatoyannopoulous - University of Washington

characteristic: lab description

characteristic: labversion

text: Mus musculus

text: UW_DnaseSeq_EPC_(CD117-,CD71+,TER119+)_E14.5_CD-1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Embryonic day 14.5

text: liver fraction CD117+,CD71+,TER119+

text: mouse

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

text: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75

text: Mus musculus

characteristic: replicate

characteristic: strain

characteristic: strain description

text: UW_DnaseSeq_EPC_(CD117+,CD71+,TER119+)_E14.5_CD-1


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

characteristic: biomaterial provider

characteristic: cell

text: liver fraction CD117+,CD71+,TER119-

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

characteristic: labexpid

text: Mus musculus

characteristic: organism

text: UW_DnaseSeq_EPC_(CD117+,CD71+,TER119-)_E14.5_CD-1

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Embryonic day 0 (stem cell)

text: A. Skoultchi Lab

text: ES-cells isolated from mix of ~20% C57/B6J, ~75% 129/Sv and ~5% SJL strains

text: mouse

text: M

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW-m

characteristic: lab

characteristic: lab description

characteristic: labversion

text: Mus musculus

text: Unknown strain origin


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: A. Skoultchi Lab

characteristic: biomaterial provider

characteristic: cell

text: Histone H1c, H1d, H1e triple null mouse embryonic stem cell line derived from ES-WW6 cells.

characteristic: cell description

text: mouse

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

text: Mus musculus

characteristic: replicate

text: Unknown strain origin

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Embryonic day 14.5

text: 1)Stam lab; 2)CSHL lab

text: Liver

text: Liver

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

characteristic: labexpid

text: Mus musculus

characteristic: organism

text: Liver

characteristic: strain

text: 129 strain mouse with homozygous deletion of the beta-globin LCR region, see Bender et. al. (2000). Beta-globin gene switching and DNase I sensitivity of the endogenous beta-globin locus in mice do not require the locus control region.

characteristic: title


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 14.5

characteristic: age description

text: 1)Stam lab; 2)CSHL lab

text: Liver

text: Liver

text: mouse

text: M

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW-m

characteristic: lab

characteristic: lab description

characteristic: labversion

text: Mus musculus

text: Liver

text: Strain 129, has widely available embryonic stem cells


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Stam lab

characteristic: biomaterial provider

characteristic: cell

text: myeloid progenitor cells, CD34+

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

text: 1,Hotspot-v5.1,lmax-v1.0,WindowDensity-bin20-win+/-75

text: Mus musculus

characteristic: replicate

text: Derived from cross between C57BL/6J Female x DBA/2J Male (C57BL/6xDBA/2)F1.

characteristic: strain description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: 1)LICR lab; 2)CSHL lab

text: tissue

characteristic: biomaterial type

text: Cerebellum

text: Cerebellum

text: mouse

text: M

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: donor id

text: UW-m

characteristic: labexpid

text: Hotspot-v5.2,Hotspot-v5.1,1,lmax-v1.1,lmax-v1.0,WindowDensity-bin20-win+/-75

text: Mus musculus

characteristic: organism

text: Cerebellum

characteristic: strain

text: C57 black 6, the most common inbred strain of laboratory mouse

text: cerebellum

characteristic: tissue type

text: UW_DnaseSeq_Cerebellum_adult-8wks_C57BL/6

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Adult 8 weeks

text: Stam lab

characteristic: biomaterial provider

text: FatPad

characteristic: cell

text: Adipose tissue

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW-m

characteristic: lab

characteristic: lab description

text: 1,Hotspot-v5.1,lmax-v1.1,WindowDensity-bin20-win+/-75

characteristic: labversion

text: Mus musculus

text: FatPad


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: 1)LICR lab; 2)CSHL lab

text: Heart

text: Heart

text: mouse

text: M

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

characteristic: labexpid

text: 1,Hotspot-v5.2,Hotspot-v5.1,lmax-v1.1,WindowDensity-bin20-win+/-75

text: Mus musculus

characteristic: organism

characteristic: replicate

text: Heart

characteristic: strain

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized

text: Immortal cells

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: B cell lymphoma line derived from a spontaneous reticulum cell neoplasm

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

text: UW-m

text: Mus musculus

text: BALB/cAnN

text: ccMyeloma high incidence H2d

characteristic: title


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: Stam lab

text: Cerebrum

text: Cerebrum

text: mouse

text: M

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW-m

characteristic: lab

text: Stamatoyannopoulous - University of Washington

characteristic: lab description

characteristic: labversion

text: Mus musculus

text: Cerebrum


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Embryonic day 0 (stem cell)

text: Dr. Levasseur (University of Iowa)

characteristic: biomaterial provider

text: Undifferentiated mouse embryonic stem cells

text: mouse

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

characteristic: labexpid

text: Mus musculus

characteristic: organism

characteristic: replicate

characteristic: strain

text: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.

characteristic: strain description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

text: M. Bender (FHCRC)

characteristic: cell

text: mouse spleen B cells, CD43-,CD11b-

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

text: UW-m

text: Mus musculus

text: UW_DnaseSeq_B-cell_(CD43-)_adult-8wks_C57BL/6

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Dr. Christine Disteche (University of Washington)

characteristic: biomaterial provider

text: Patski

text: Mouse Embryonic Kidney Fibroblast. As described in Lingenfelter et al., 1998 (Nat Genet. 1998 18:212-3) and Yang et al., 2010 (Genome Res. 2010 20:614-22), PATSKI is a female interspecific mouse fibroblast that was derived from the embryonic kidney of an M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X. This is an adherent cell line.

text: mouse

text: M

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW-m

characteristic: lab

characteristic: lab description

characteristic: labversion

text: Mus musculus

text: Patski

text: UW_DnaseSeq_Patski_immortalized_Spretus.BL6-Xist


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 11.5

characteristic: age description

text: Selleri lab, Cornell

text: HeadlessEmbryo

text: Whole embryos with heads removed

text: mouse

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: UW-m

characteristic: labexpid

text: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75

text: Mus musculus

characteristic: organism

characteristic: replicate

text: HeadlessEmbryo

characteristic: strain

text: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Adult 8 weeks

text: 1)Stam lab; 2)CSHL lab

characteristic: biomaterial provider

text: GenitalFatPad

characteristic: cell

text: Genital Adipose tissue

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

text: UW-m

text: Mus musculus

text: GenitalFatPad

text: UW_DnaseSeq_GenitalFatPad_adult-8wks_C57BL/6

characteristic: title


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 11.5

characteristic: age description

text: Selleri lab, Cornell

text: ForelimbBud

text: embryo forelimb buds

text: mouse

text: M

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: datatype description

text: UW-m

characteristic: lab

characteristic: lab description

characteristic: labversion

text: Mus musculus

text: ForelimbBud