characteristic: INSDC first public

text: live

text: Generic

text: Vibrio cholerae HC-62B1

text: Vibrio cholerae HC-62B1


status: PUBLIC

characteristic: External Id

text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Vibrio cholerae HC-44C1

characteristic: organism

tag: attribute

characteristic: strain

text: Vibrio cholerae HC-44C1

characteristic: title


text: live

text: Generic

text: Vibrio cholerae HC-17A2

text: Vibrio cholerae HC-17A2


text: live

text: Generic

text: Vibrio cholerae HC-02C1

text: Vibrio cholerae HC-02C1


text: live

text: Generic

text: Vibrio cholerae HC-59B1

text: Vibrio cholerae HC-59B1


text: live

text: Generic

text: Vibrio harveyi

text: unknown HENC-01


text: live

text: Generic

text: Vibrio harveyi

text: unknown HENC-02


text: live

text: Generic

text: Vibrio sp. HENC-03

text: unknown HENC-03


JY whole cell RNA-seq

text: Tulane Cancer Center

text: live

text: Generic

text: JY is a type III latency cell line derived from a human cell line which was made by infection of peripheral blood lymphocytes with the B95-8 strain of EBV

characteristic: description

text: Homo sapiens

text: Identification of new viral genes and transcript isoforms during Epstein-Barr virus reactivation using RNA-seq.


name: Coptotermes formosanus gut protist metatranscriptome Transcriptome or Gene expression

text: Institute of Plant Physiology and Ecology, China

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: China: suburb of Shanghai

characteristic: country

text: This sample is collected from a nest in a suburb of Shanghai, P. R. China, and maintained in the laboratory at 25 * 1*C and 65 * 1% relative humidity on a wood diet.

text: termite gut metagenome

text: To profile the metatranscriptome of the protistan community in Coptotermes formosanus


text: University of Exeter

text: live

text: Generic

text: Bacterial isolate from kiwi fruit Actinidia chinensis cultivar Hongyang in Shaanxi, China, 2010.

text: Pseudomonas syringae pv. actinidiae

text: Psa CH2010-6


P. s. pv. theae NCPPB2598

text: University of Exeter

text: live

text: Generic

text: Bacterial isolate from Thea sinensis, Japan, 1974.

text: Pseudomonas syringae pv. theae

text: P. s. pv. theae NCPPB2598


P. s. pv. actinidiae CFBP7286

text: University of Exeter

text: live

text: Generic

text: Bacterial isolate from kiwi fruit Actinidia chinensis cultivar Hort16A in Lazio, Italy, 2008.

text: Pseudomonas syringae pv. actinidiae

text: P. s. pv. actinidiae CFBP7286


P. s. pv. actinidiae KW41

text: University of Exeter

text: live

text: Generic

text: Bacterial isolate from kiwi fruit Actinidia chinensis cultivar Hayward in Shizuoka, Japan, 1984.

text: Pseudomonas syringae pv. actinidiae

text: P. s. pv. actinidiae KW41


P. s. pv. actinidiae PA459

text: University of Exeter

text: live

text: Generic

text: Bacterial isolate from kiwi fruit Actinidia chinensis, Japan, 1988.

text: Pseudomonas syringae pv. actinidiae

text: P. s. pv. actinidiae PA459


name: P. syringae pv. actinidiae CH2010-5 (PsaV)

text: University of Exeter

text: live

text: Generic

text: Pseudomonas syringae pv. actinidiae


text: University of Exeter

text: live

text: Generic

text: Genome sequencing of bacterial isolate NCPPB1131 from the National Collection of Plant Pathogenic Bacteria (NCPPB).

text: Xanthomonas sp. NCPPB 1131

text: NCPPB 1131

text: Xanthomonas species NCPPB1131


text: University of Exeter

text: live

text: Generic

text: Genome sequencing of bacterial isolate NCPPB1132 from the National Collection of Plant Pathogenic Bacteria (NCPPB).

text: Xanthomonas sp. NCPPB 1132

text: NCPPB 1132

text: Xanthomonas species NCPPB1132


text: University of Exeter

text: live

text: Generic

text: Genome sequencing of bacterial isolate NCPPB4393 from the National Collection of Plant Pathogenic Bacteria (NCPPB).

text: Xanthomonas sacchari NCPPB 4393

text: NCPPB 4393

text: Xanthomonas sacchari NCPPB 4393


text: University of Maryland

text: live

text: Generic

text: Pristina leidyi 454 pyrosequencing reads from plate 1 region 1 (of 2) - from mixed stage regeneration and fission cDNA

text: Pristina leidyi

text: Pristina leidyi 454 reads from plate region 1 of 2


text: live

text: Generic

text: Shigella dysenteriae 225-75

text: Shigella dysenteriae 225-75


text: live

text: Generic

text: Shigella dysenteriae 5514-56

text: Shigella dysenteriae 5514-56


text: live

text: Generic

text: Shigella boydii 4444-74

text: Shigella boydii 4444-74


text: NCI

text: live

text: Generic

text: Homo sapiens

text: Metastatic DNA Sample 1


PT

text: NCI

text: live

text: Generic

text: Homo sapiens

text: Primary Tumor DNA


text: NCI

text: live

text: Generic

text: Homo sapiens

text: Metastatic DNA Sample 2


Liver

text: NCI

text: live

text: Generic

text: Homo sapiens

text: Liver Germline DNA


Skin

text: NCI

text: live

text: Generic

text: Homo sapiens

text: Skin Germline DNA


text: NCI

text: live

text: Generic

text: Homo sapiens

text: Transcriptome NB1001


text: NCI

text: live

text: Generic

text: Homo sapiens

text: Transcriptome NB1003


text: NCI

text: live

text: Generic

text: Homo sapiens

text: Transcriptome NB1005


text: MIT

text: live

text: Generic

characteristic: cell line

text: Mus musculus


text: MIT

text: live

text: Generic

text: primary thymocyte

characteristic: cell type

text: 5-8 weeks

characteristic: mouse age

text: Mus musculus

text: Runx1f/f on C57BL/6 background


characteristic: External Id

text: MIT

characteristic: INSDC first public

text: live

text: Generic

text: primary thymocyte

text: 5-8 weeks

text: Mus musculus

text: Runx1f/f,Vav1-Cre on C57BL/6 background


name: Resequencing of A. thaliana accession Kas-1

text: University of Texas, Austin

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

text: High molecular weight genomic DNA was extracted from a single individual of A. thaliana accession Kas-1DNA was shipped to the Institute for Genome Sciences and Policy at Duke University, where it was used to generate a randomly fragmented genomic library using standard Roche protocols. This library was sequenced using 454 FLX Titanium chemistry at the Duke sequencing facility.

text: Arabidopsis thaliana


WheatTranscriptome

text: University of Adelaide

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: kukri

characteristic: cultivar

text: The RNA was extracted from root and shoot tissue from seedlings ranging from 8-12 days after germination, as well as florets collected at various stages from pre-meiosis to just prior to anthesis. The RNA was normalized using the Kamchatka crab duplex-specific nuclease.

text: Triticum aestivum

text: florets ; pre-meiosis through just prior to anthesis

text: root and shoot; 8-12 day post germination

text: Triticum aestivum cv. Kukri


text: The Institute of Medicinal Plant Development

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Ganoderma lucidum strain CGMCC5.0026

text: Ganoderma lucidum

text: Ganoderma lucidum strain CGMCC5.0026


controll

text: University of Copenhagen

text: live

text: Generic

text: control group consisting of 15 NOD mice receiving water, DNA from feces samples was extracted using QIAamp DNA Stool Mini Kit.

text: Mus musculus domesticus

characteristic: organism

characteristic: title


recovered group

text: University of Copenhagen

text: live

text: Generic

text: Recovered group consisting of 18 NOD mice vancomycin treated(from birth-day28) feces sampled upon euthanization. DNA extracted with QIAamp DNA Stool Mini Kit.

characteristic: description

text: Mus musculus domesticus


text: University of Copenhagen

text: live

text: Generic

text: Vancomycin treated group composed of 13 NOD adult mice. DNA extracted from feces samples using QIAamp DNA Stool Mini Kit.

text: Mus musculus domesticus


text: University of Copenhagen

text: live

text: Generic

text: Vancomycin treated group consisting of 20 NOD neonate mice. DNA extracted from feces samples using QIAamp DNA Stool Mini Kit.

text: Mus musculus domesticus

text: VanNODpup


metalcontam

text: NAAS, RDA, Korea

text: live

text: Generic

text: Sample Barcode Description DD1 TCGTCATAC Normal soil from upland in Bonghwa, Korea DD2 TCAGATGAC Normal soil from upland in Bonghwa, Korea HH2 TCGAGTAGAC Normal soil from upland in Hwacheon, Korea YH1 CGTGTACTGAC Normal soil from upland in Bonghwa, Korea D1 AGAGCTGAC Heavy metal contamination soil from upland in Bonghwa, Korea D3 CGATGAGAC Heavy metal contamination soil from upland in Bonghwa, Korea HWC CTGTCTACGAC Heavy metal contamination soil from upland in Hwacheon, Korea Y ATGCTGAGAC Heavy metal contamination soil from upland in Bonghwa, Korea

text: soil metagenome

text: Soil metagenome


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular Tumor 1, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular Tumor 1, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 2, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 2, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 3, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 3, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 4, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 4, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 5, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 6, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 6, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 7, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 7, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 8, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, nodular

text: Homo sapiens

text: Nodular basal cell carcinoma

text: Nodular tumor 8, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 1, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 1, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 2, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 2, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 3, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 3, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 4, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 4, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 5, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 5, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 6, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 6, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 7, lane 1


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 7, lane 2


text: Yale University

text: live

text: Generic

text: Basal Cell Carcinoma, infiltrative

text: Homo sapiens

text: Infiltrative Basal Cell Carcinoma

text: Infiltrative tumor 8, lane 1


text: Broad Institute

text: live

text: Generic

text: 2-3 months

characteristic: age

characteristic: chip

text: Mus musculus

text: male

characteristic: sex

text: liver

text: CD1 outbred mice

characteristic: strain

text: liver

characteristic: tissue

text: Foxa1 ChIP rep1


characteristic: External Id

text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: 2-3 months

text: Mus musculus

text: male

text: liver

text: CD1 outbred mice

text: liver

text: Foxa1 ChIP rep2


text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

text: 2-3 months

text: Mus musculus

text: male

text: liver

text: CD1 outbred mice

text: liver

text: Foxa1 ChIP rep3


text: Broad Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 2-3 months

text: Mus musculus

text: male

text: liver

text: CD1 outbred mice

text: liver

text: Foxa1 ChIP rep4


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: 2-3 months

text: Mus musculus

text: male

text: liver

text: CD1 outbred mice

text: liver

text: Foxa1 ChIP rep5


text: General and Molecular Botany, Ruhr-University Bochum

text: live

text: Generic

characteristic: NCBI submission package

text: Sordaria macrospora

text: wild type vegetative mycelium

text: wild type

text: total vegetative mycelium


text: live

text: Generic

characteristic: SRA accession

text: Sordaria macrospora

text: wild type sexual mycelium

text: wild type

text: total sexual mycelium


text: live

text: Generic

text: Sordaria macrospora

characteristic: organism

text: wild type protoperithecia

text: wild type

text: protoperithecia


text: live

text: Generic

text: Sordaria macrospora

text: pro1 protoperithecia

text: protoperithecia

characteristic: title


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Ambrosia Beetle Gallery Community

characteristic: description

text: beetle metagenome

text: TCTATacgggcggtgtgtRc

characteristic: primer

text: Bern, Switzerland

characteristic: sample location

text: Generic sample from beetle metagenome


text: live

text: Generic

text: Ambrosia Beetle Larvae Community

text: beetle metagenome

text: TGCTGacgggcggtgtgtRc

text: Bern, Switzerland

text: Generic sample from beetle metagenome


text: live

text: Generic

text: Ambrosia Beetle Adult Community

text: beetle metagenome

text: TGTAGacgggcggtgtgtRc

text: Bern, Switzerland

text: Generic sample from beetle metagenome


B73 endosperm

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize B73 endosperm biological rep 1


Mo17 endosperm

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize Mo17 endosperm biological rep 1


B73 embryo

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize B73 embryo


Mo17 embryo

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize Mo17 embryo


B73 endosperm 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize B73 endosperm 2


B73 endosperm 3

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize B73 endosperm 3


Mo17 endosperm 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize Mo17 endosperm 2


Mo17 endosperm 3

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize Mo17 endosperm 3


B73 embryo 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize B73 embryo 2


B73 embryo 3

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize B73 embryo 3


Mo17 embryo 2

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize Mo17 embryo 2


Mo17 embryo 3

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize Mo17 embryo 3


text: Children's Mercy Hosiptal

text: live

text: Generic

text: Homo sapiens

text: Rheumatoid Arthritis Synovial Fibroblast 1


text: Children's Mercy Hosiptal

text: live

text: Generic

text: Homo sapiens

text: Rheumatoid Arthritis Synovial Fibroblast 2


text: Children's Mercy Hosiptal

text: live

text: Generic

text: Homo sapiens

text: Control Synovial Fibroblast 1


text: Children's Mercy Hosiptal

text: live

text: Generic

text: Homo sapiens

text: Control Synovial Fibroblast 2


Gumbus

text: CIT

text: live

text: Generic

text: Homo sapiens

text: Gumbus


text: CIT

text: live

text: Generic

text: Homo sapiens


Raji

text: CIT

text: live

text: Generic

text: Homo sapiens

text: Raji


Thomas

text: CIT

text: live

text: Generic

text: Homo sapiens

text: Thomas


Ramos

text: CIT

text: live

text: Generic

text: Homo sapiens

text: Ramos


Namalwa

text: CIT

text: live

text: Generic

text: Homo sapiens

text: Namalwa


EW

text: CIT

text: live

text: Generic

text: Homo sapiens

text: EW


Daudi

text: CIT

text: live

text: Generic

text: Homo sapiens

text: Daudi


text: University of Minnesota

text: live

text: Generic

text: Plasmid pGTy1his3AI-SCUF DNA was transformed into strains YPH499, YPH501, BY4741 and rrm3∆::kanMX, hos2∆::kanMX, rtt109∆::kanMX and rad6∆::kanMX derivatives of BY4741.

text: Saccharomyces cerevisiae

text: Yeast Sample


text: Texas A&M University

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: USA: sediment collected from Bakers Hot Springs, Utah

characteristic: country

text: 16S rRNA gene pyro-tags sediment collected from Bakers Hot Springs, Utah

text: hot springs metagenome

text: Comparison of soil inocula to fermentation communities using the carboxylate platform


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: a hot spring located in Big Bend National Park, Texas

text: 16S rRNA gene pyro-tags a hot spring located in Big Bend National Park, Texas

text: hot springs metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: 16S rRNA gene located in Big Bend National Park, Texas

text: hot springs metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: hypersaline sediment collected at Bitter Lake, New Mexico

text: 16S rRNA gene sediment collected at Bitter Lake, New Mexico

text: sediment metagenome


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: 1hr HU arrest after release from 4hr α-factor arrest

characteristic: cell stage

text: Saccharomyces cerevisiae

text: BrdU-IP-seq WT

text: WT

characteristic: strain

text: BrdU-IP-seq WT 1


characteristic: External Id

text: Hannon, Cold Spring Harbor Laboratory

characteristic: INSDC first public

text: live

text: Generic

text: Saccharomyces cerevisiae

text: BrdU-IP-seq WT

text: WT

text: BrdU-IP-seq WT 2


text: Hannon, Cold Spring Harbor Laboratory

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

text: Saccharomyces cerevisiae

text: BrdU-IP-seq fkh1Δ

text: BrdU-IP-seq fkh1Δ 1


text: Hannon, Cold Spring Harbor Laboratory

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Saccharomyces cerevisiae

text: BrdU-IP-seq fkh1Δ

text: BrdU-IP-seq fkh1Δ 2


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Saccharomyces cerevisiae

text: BrdU-IP-seq fkh2Δ

text: BrdU-IP-seq fkh2Δ 1


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

characteristic: SRA accession

text: Saccharomyces cerevisiae

characteristic: organism

text: BrdU-IP-seq fkh2Δ

text: BrdU-IP-seq fkh2Δ 2


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: BrdU-IP-seq fkh1Δfkh1Δ

text: BrdU-IP-seq fkh1Δfkh1Δ 1

characteristic: title


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: BrdU-IP-seq fkh1Δfkh1Δ

text: BrdU-IP-seq fkh1Δfkh1Δ 2


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: BrdU-IP-seq fkh1Δfkh1Δ2C

text: BrdU-IP-seq fkh1Δfkh1Δ2C 1


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: BrdU-IP-seq fkh1Δfkh1Δ2C

text: BrdU-IP-seq fkh1Δfkh1Δ2C 2


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Asynchronous

text: Saccharomyces cerevisiae

text: Rpb3-chIP-seq Asynchronous WT

text: WT

text: Rpb3-chIP-seq Asynchronous WT 1


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Asynchronous

text: Saccharomyces cerevisiae

text: Rpb3-chIP-seq Asynchronous WT

text: WT

text: Rpb3-chIP-seq Asynchronous WT 2


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Asynchronous

text: Saccharomyces cerevisiae

text: Rpb3-chIP-seq Asynchronous fkh1Δfkh1Δ2C

text: Rpb3-chIP-seq Asynchronous fkh1Δfkh1Δ2C 1


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Asynchronous

text: Saccharomyces cerevisiae

text: Rpb3-chIP-seq Asynchronous fkh1Δfkh1Δ2C

text: Rpb3-chIP-seq Asynchronous fkh1Δfkh1Δ2C 2


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Rpb3-chIP-seq G1 Arrested WT

text: WT

text: Rpb3-chIP-seq G1 Arrested WT 1


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Rpb3-chIP-seq G1 Arrested WT

text: WT

text: Rpb3-chIP-seq G1 Arrested WT 2


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Rpb3-chIP-seq G1 Arrested fkh1Δfkh1Δ2C

text: Rpb3-chIP-seq G1 Arrested fkh1Δfkh1Δ2C 1


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Rpb3-chIP-seq G1 Arrested fkh1Δfkh1Δ2C

text: Rpb3-chIP-seq G1 Arrested fkh1Δfkh1Δ2C 2


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Asynchronous

text: Saccharomyces cerevisiae

text: RNA-seq Asynchronous WT

text: WT

text: RNA-seq Asynchronous WT 1


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Asynchronous

text: Saccharomyces cerevisiae

text: RNA-seq Asynchronous WT

text: WT

text: RNA-seq Asynchronous WT 2


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Asynchronous

text: Saccharomyces cerevisiae

text: RNA-seq Asynchronous fkh1Δfkh1Δ2C

text: RNA-seq Asynchronous fkh1Δfkh1Δ2C 1


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Asynchronous

text: Saccharomyces cerevisiae

text: RNA-seq Asynchronous fkh1Δfkh1Δ2C

text: RNA-seq Asynchronous fkh1Δfkh1Δ2C 2


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: RNA-seq G1 Arrested WT

text: WT

text: RNA-seq G1 Arrested WT 1


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: RNA-seq G1 Arrested WT

text: WT

text: RNA-seq G1 Arrested WT 2


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: RNA-seq G1 Arrested fkh1Δfkh1Δ2C

text: RNA-seq G1 Arrested fkh1Δfkh1Δ2C 1


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Saccharomyces cerevisiae

text: RNA-seq G1 Arrested fkh1Δfkh1Δ2C

text: RNA-seq G1 Arrested fkh1Δfkh1Δ2C 2


text: Jonathan S Weissman, CMP, UCSF

text: live

text: Generic

text: MC4100 ∆tig::kan pTig-TEV-Avi

characteristic: genotype/variation

text: mid-log phase

characteristic: growth stage

text: Escherichia coli

text: Harvested by chloramphenicol pre-treatment and centrifugation; DSP treated ex vivo; Affinity purified TF crosslinked RNC footprints


text: Jonathan S Weissman, CMP, UCSF

text: live

text: Generic

text: MC4100 ∆tig::kan pTig-TEV-Avi

text: mid-log phase

text: Escherichia coli

text: Harvested by chloramphenicol pre-treatment and centrifugation; DSP treated ex vivo; Total footprints


text: Jonathan S Weissman, CMP, UCSF

text: live

text: Generic

text: MC4100 ∆tig::kan pTig-TEV-Avi

text: mid-log phase

text: Escherichia coli

text: Harvested by rapid filtration; DSP treated ex vivo; Affinity purified TF crosslinked RNC footprints


text: Jonathan S Weissman, CMP, UCSF

text: live

text: Generic

text: MC4100 ∆tig::kan pTig-TEV-Avi

text: mid-log phase

text: Escherichia coli

text: Harvested by rapid filtration; DSP treated ex vivo; Total footprints


text: Jonathan S Weissman, CMP, UCSF

text: live

text: Generic

text: MC4100 ∆tig::kan pTig-TEV-Avi

text: mid-log phase

text: Escherichia coli

text: Harvested by rapid filtration; EDC treated ex vivo; Affinity purified TF crosslinked RNC footprints


text: Jonathan S Weissman, CMP, UCSF

text: live

text: Generic

text: MC4100 ∆tig::kan pTig-TEV-Avi

text: mid-log phase

text: Escherichia coli

text: Harvested by rapid filtration; EDC treated ex vivo; Total footprints


text: Texas A&M University

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: USA: sediment collected at Brazoria National Wildlife Refuge, Texas

text: 16S rRNA gene sediment collected at Brazoria National Wildlife Refuge, Texas

characteristic: description

text: sediment metagenome

text: Comparison of soil inocula to fermentation communities using the carboxylate platform


text: Jacques Neefjes, Cell Bioloy II, The Netherlands Cancer Institute

text: live

text: Generic

characteristic: cell line

text: Human colon adenocarcinoma

characteristic: cell type

text: Homo sapiens

text: SW620 cells

text: control

characteristic: time point

text: SW620 un-treated FAIRE-seq

text: Un-treated

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Human colon adenocarcinoma

text: Homo sapiens

text: SW620 cells

text: 4 hours post treatment

text: SW620 aclarubicin FAIRE-seq

text: Aclarubicin 20uM


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Human colon adenocarcinoma

text: Homo sapiens

text: SW620 cells

text: 4 hours post treatment

text: SW620 doxorubicin FAIRE-seq

text: Doxorubicin 20uM


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Human colon adenocarcinoma

text: Homo sapiens

text: SW620 cells

text: 4 hours post treatment

text: SW620 etoposide FAIRE-seq

text: Etoposide 60uM


text: live

text: Generic

text: MelJuSo

text: Human skin melanoma cell line

text: Homo sapiens

characteristic: organism

text: MelJuSo cells

text: control

text: MelJuSo un-treated FAIRE-seq

characteristic: title

text: Un-treated


text: live

text: Generic

text: MelJuSo

text: Human skin melanoma cell line

text: Homo sapiens

text: MelJuSo cells

text: 4 hours post treatment

text: MelJuSo aclarubicin FAIRE-seq

text: Aclarubicin 20uM


text: live

text: Generic

text: MelJuSo

text: Human skin melanoma cell line

text: Homo sapiens

text: MelJuSo cells

text: 4 hours post treatment

text: MelJuSo doxorubicin FAIRE-seq

text: Doxorubicin 9uM


text: live

text: Generic

text: MelJuSo

text: Human skin melanoma cell line

text: Homo sapiens

text: MelJuSo cells

text: 4 hours post treatment

text: MelJuSo etoposide FAIRE-seq

text: Etoposide 60uM


text: live

text: Generic

text: MelJuSo

text: Human skin melanoma cell line

characteristic: chip antibody

text: Abcam

characteristic: chip antibody manufacturer

text: Homo sapiens

text: MelJuSo cells

text: control

text: MelJuSo un-treated H3K4me3 ChIP-seq

text: Un-treated


text: live

text: Generic

text: MelJuSo

characteristic: cell line

text: Human skin melanoma cell line

text: Abcam

text: Homo sapiens

text: MelJuSo cells

text: 24 hours post drug removal

text: MelJuSo doxorubicin H3K4me3 ChIP-seq

text: Doxorubicin 9uM 2 hours


text: live

text: Generic

text: MelJuSo

text: Human skin melanoma cell line

characteristic: cell type

text: Abcam

text: Homo sapiens

text: MelJuSo cells

text: 24 hours post drug removal

text: MelJuSo etoposide H3K4me3 ChIP-seq

text: Etoposide 60uM 2 hours


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: Penetrating apressoria

text: Penetrating apressoria

characteristic: stage

text: Penetrating apressoria, biogical replicate 1


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: Penetrating apressoria

text: Penetrating apressoria

text: Penetrating apressoria, biogical replicate 2


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: Penetrating apressoria

text: Penetrating apressoria

text: Penetrating apressoria, biogical replicate 3


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: In vitro apressoria

text: In vitro apressoria

text: In vitro apressoria, biological replicate 1


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: In vitro apressoria

text: In vitro apressoria

text: In vitro apressoria, biological replicate 2


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: In vitro apressoria

text: In vitro apressoria

text: In vitro apressoria, biological replicate 3


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: Biotrophic phase

text: Biotrophic phase

text: Biotrophic hyphea, biological replicate 1


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: Biotrophic phase

text: Biotrophic phase

text: Biotrophic hyphea, biological replicate 2


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: Biotrophic phase

text: Biotrophic phase

text: Biotrophic hyphea, biological replicate 3


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: Switch (necrotrophic phase)

text: Switch (necrotrophic phase)

text: Switch, biological replicate 1


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: Switch (necrotrophic phase)

text: Switch (necrotrophic phase)

text: Switch, biological replicate 2


text: Max Planck Institute

text: live

text: Generic

text: Colletotrichum higginsianum

text: Switch (necrotrophic phase)

text: Switch (necrotrophic phase)

text: Switch, biological replicate 3


text: Texas A&M University

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: USA: Brazoria National Wildlife Refuge, Texas

characteristic: country

text: First set of 16S rRNA gene pyro-tags for the second sample of sediment collected at Brazoria National Wildlife Refuge, Texas in October 2008

characteristic: description

text: sediment metagenome


characteristic: External Id

text: Texas A&M University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: First set of 16S rRNA gene pyro-tags for the fifth sample of sediment collected at Brazoria National Wildlife Refuge, Texas in October 2008

text: sediment metagenome


text: Texas A&M University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: First set of 16S rRNA gene pyro-tags for the sixth sample of sediment collected at Brazoria National Wildlife Refuge, Texas in October 2008

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

text: First set of 16S rRNA gene pyro-tags for the ninth sample of sediment collected at Brazoria National Wildlife Refuge, Texas in October 2008

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: Puerto Rico: Boqueron National Wildlife Refuge

text: 16S rRNA gene pyro-tags for sediment collected at Boqueron National Wildlife Refuge, Puerto Rico

text: sediment metagenome

characteristic: organism

characteristic: title


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: sediment collected at a hot spring located near Firehole Drive in Yellowstone National Park, Wyoming

text: 16S rRNA gene sediment collected at a hot spring located near Firehole Drive in Yellowstone National Park, Wyoming

text: hot springs metagenome

text: Comparison of soil inocula to fermentation communities using the carboxylate platform


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: sediment collected at Great Salt Plains National Wildlife Refuge, Oklahoma

text: 16S rRNA gene sediment collected at Great Salt Plains National Wildlife Refuge, Oklahoma

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: sediment collected at the hypersaline Paul's Lake located inside Muleshoe National Wildlife Refuge, Texas

text: 16S rRNA gene sediment collected at the hypersaline Paul's Lake located inside Muleshoe National Wildlife Refuge, Texas

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: hypersaline sediment collected at Owens Lake, California

text: First set of 16S rRNA gene sediment collected at Owens Lake, California

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with sediment from Pauls Lake 6, Muleshoe National Wildlife Refuge, Texas

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with sediment from Brazoria 1 collected October 2008, Brazoria National Wildlife Refuge, Texas

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: First set of 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with sediment from Brazoria 2 collected October 2008, Brazoria National Wildlife Refuge, Texas

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with sediment from Brazoria 5 collected October 2008, Brazoria National Wildlife Refuge, Texas

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with sediment from Brazoria 6 collected October 2008, Brazoria National Wildlife Refuge, Texas

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: First set of 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with sediment from Brazoria 9 collected October 2008, Brazoria National Wildlife Refuge, Texas

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: First set of 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with r Lake, Mexico

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: First set of 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with San Franciso Bay 1, San Francisco Bay National Wildlife Refuge, California

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with San Franciso Bay 20, San Francisco Bay National Wildlife Refuge, California

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with Big Bend 4, Big Bend National Park, Texas

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with Big Bend 11, Big Bend National Park, Texas

text: sediment metagenome

text: Comparison of soil inocula to fermentation communities using the carboxylate platform


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with Big Bend 18, Big Bend National Park, Texas

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with Big Bend 19, Big Bend National Park, Texas

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: Big Bend 20, Big Bend National Park, Texas

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with Big Bend 20, Big Bend National Park, Texas

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: Bakers Hot Springs, Utah

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with Bakers Hot Springs, Utah

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: Boqueron National Wildlife Refuge, Puerto Rico

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with Boqueron National Wildlife Refuge, Puerto Rico

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: a hot spring near Firehole Drive, Yellowstone National Park, Wyoming

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with a hot spring near Firehole Drive, Yellowstone National Park, Wyoming

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: a hot spring near Sulfatara Trail, Yellowstone National Park, Wyoming

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with a hot spring near Sulfatara Trail, Yellowstone National Park, Wyoming

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: Owens Lake, California

text: 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with Owens Lake, California

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: 16S rRNA gene pyro-tags of the first sediment sample collected at San Francisco Bay National Wildlife Refuge, California

text: marine sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: San Francisco Bay National Wildlife Refuge, California

text: First set of 16S rRNA gene pyro-tags of the twentieth sediment sample collected at San Francisco Bay National Wildlife Refuge, California

text: marine sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: hot spring near Sulfatara Trail, Yellowstone National Park, Wyoming

text: First set of 16S rRNA gene pyro-tags from sediment collected from a hot spring near Sulfatara Trail, Yellowstone National Park, Wyoming

text: hot springs metagenome


text: Texas A&M University

text: live

text: Generic

text: Generic

text: USA: Great Salt Plains National Wildlife Refuge, Oklahoma

text: First set of 16S rRNA gene pyrotags of the carboxylate platform laboratory screen collected at day 30 operated with paper at 55 deg C inoculated with sediment from Great Salt Plains National Wildlife Refuge, Oklahoma

text: sediment metagenome

text: Comparison of soil inocula to fermentation communities using the carboxylate platform


text: University of Copenhagen

text: live

text: Generic

text: Control group consisting of 15 NOD mice receiving water, DNA from feces samples was extracted using QIAamp DNA Stool Mini Kit.

text: Mus musculus domesticus


text: University of Copenhagen

text: live

text: Generic

text: control group consisting of 15 NOD mice receiving water, DNA from feces samples was extracted using QIAamp DNA Stool Mini Kit.

text: Mus musculus domesticus


text: University of Copenhagen

text: live

text: Generic

text: Vancomycin treated group composed of 13 NOD adult mice. DNA extracted from feces samples using QIAamp DNA Stool Mini Kit.

text: Mus musculus domesticus


recovered group02

text: University of Copenhagen

text: live

text: Generic

text: Recovered group consisting of 18 NOD mice vancomycin treated(from birth-day28) feces sampled upon euthanization. DNA extracted with QIAamp DNA Stool Mini Kit.

text: Mus musculus domesticus


recovered group03

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group04

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group05

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group6

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group07

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group08

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group09

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group10

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group11

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group12

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group13

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group14

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group15

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group16

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


recovered group17

text: University of Copenhagen

text: live

text: Generic

text: Recovered group consisting of 18 NOD mice vancomycin treated(from birth-day28) feces sampled upon euthanization. DNA extracted with QIAamp DNA Stool Mini Kit

text: Mus musculus domesticus


recovered group18

text: University of Copenhagen

text: live

text: Generic

text: Mus musculus domesticus


text: University of Copenhagen

text: live

text: Generic

text: Vancomycin treated group consisting of 20 NOD neonate mice. DNA extracted from feces samples using QIAamp DNA Stool Mini Kit.

text: Mus musculus domesticus


text: Leiden University Medical Center

text: live

text: Generic

text: Homo sapiens

text: untreated whole blood

text: whole blood

characteristic: tissue


text: Leiden University Medical Center

text: live

text: Generic

text: Homo sapiens

text: globin reduced blood

text: whole blood


Fagus QB

text: INRA

text: live

text: Generic

text: cDNA were generated using total RNA extracted from quiescent buds. RNA samples were obtained from 3 genotypes.

text: Fagus sylvatica

text: Fagus QB


Fagus SB

text: INRA

text: live

text: Generic

text: cDNA were generated using total RNA extracted from swelling buds. RNA samples were obtained from 3 genotypes.

text: Fagus sylvatica

text: Fagus SB


Fagus YL

text: INRA

text: live

text: Generic

text: cDNA were generated using total RNA extracted from young leaves. RNA samples were obtained from 3 genotypes.

text: Fagus sylvatica

text: Fagus YL


Fagus OL

text: INRA

text: live

text: Generic

text: cDNA were generated using total RNA extracted from old leaves. RNA samples were obtained from 3 genotypes.

text: Fagus sylvatica

text: Fagus OL


Fagus DX

text: INRA

text: live

text: Generic

text: cDNA were generated using total RNA extracted from differentiating xylem. RNA samples were obtained from 3 genotypes.

text: Fagus sylvatica

text: Fagus DX


text: Division of Genetic an Reproductive Toxicology, National Center for Toxicological Research

text: live

text: Generic

text: 6 weeks

characteristic: age

text: male

characteristic: gender

text: Big Blue Transgenic

characteristic: genetics

text: Rattus norvegicus

text: sodium chloride treated

text: Fisher 344

characteristic: strain

text: liver


text: live

text: Generic

text: 6 weeks

text: male

text: Big Blue Transgenic

text: Rattus norvegicus

text: AA treated

text: Fisher 344

text: liver


BM embro Hiseq

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize BxM hybrid embryo


MB embryo hiseq

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize MxB hybrid embryo


BM endosperm hiseq

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize BxM hybrid endosperm


MB endosperm hyseq

text: University of Minnesota

text: live

text: Generic

text: Zea mays

text: maize MxB hybrid endosperm


Carpinus BQ

text: INRA

text: live

text: Generic

text: cDNA were obtained from total RNA extracted from quiescent buds harvested on 3 genotypes.

characteristic: description

text: Carpinus betulus

text: Carpinus BQ


Carpinus SB

characteristic: External Id

text: INRA

text: live

text: Generic

text: cDNA were obtained from total RNA extracted from swelling buds harvested on 3 genotypes.

text: Carpinus betulus

text: Carpinus SB


genamibe

text: Pasteur Institute Paris

characteristic: INSDC center name

text: live

text: Generic

text: Tobamovirus

text: test


text: Texas A&M University

characteristic: INSDC first public

text: live

text: Generic

text: 16S rRNA gene pyro-tags from saline sediment collected from Cabo Rojo National Wildlife Refuge, Puerto Rico

text: sediment metagenome

text: Comparison of saline and hypersaline sediment bacterial communities


text: Texas A&M University

characteristic: INSDC last update

text: live

text: Generic

text: 16S rRNA gene pyro-tags from saline sediment collected from Great Salt Lake, Utah

text: hypersaline lake metagenome


text: Bartel, Whitehead Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: 1-cell/2-cell embryo proper

characteristic: developmental stage

text: Col-0/Cvi-0 hybrids

characteristic: ecotype

text: Arabidopsis thaliana

text: embryos

text: poly(A)+ RNAs from 1-cell/2-cell embryos derived from from Col-0 x Cvi-0 crosses


text: Bartel, Whitehead Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 1-cell/2-cell embryo proper

text: Cvi-0/Col-0 hybrids

text: Arabidopsis thaliana

text: embryos

text: poly(A)+ RNAs from 1-cell/2-cell embryos derived from from Cvi-0 x Col-0 crosses


text: Bartel, Whitehead Institute

text: live

text: Generic

characteristic: SRA accession

text: 8-cell embryo proper

text: Col-0/Cvi-0 hybrids

text: Arabidopsis thaliana

characteristic: organism

text: embryos

text: poly(A)+ RNAs from 8-cell embryos derived from from Col-0 x Cvi-0 crosses

characteristic: title


text: Bartel, Whitehead Institute

text: live

text: Generic

text: 8-cell embryo proper

text: Cvi-0/Col-0 hybrids

text: Arabidopsis thaliana

text: embryos

characteristic: tissue

text: poly(A)+ RNAs from 8-cell embryos derived from from Cvi-0 x Col-0 crosses


text: Bartel, Whitehead Institute

text: live

text: Generic

text: ~32-cell embryo proper

text: Col-0/Cvi-0 hybrids

text: Arabidopsis thaliana

text: embryos

text: poly(A)+ RNAs from ~32-cell embryos derived from from Col-0 x Cvi-0 crosses


text: Bartel, Whitehead Institute

text: live

text: Generic

text: ~32-cell embryo proper

text: Cvi-0/Col-0 hybrids

text: Arabidopsis thaliana

text: embryos

text: poly(A)+ RNAs from ~32-cell embryos derived from from Cvi-0 x Col-0 crosses


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from saline sediment collected from an island in Mono Lake, California

text: hypersaline lake metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from saline sediment collected from Owens Lake, California

text: hypersaline lake metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from saline sediment collected from San Francisco Bay National Wildlife Refuge, California

text: marine sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from saline sediment collected from Stillwater National Wildlife Refuge, Nevada

text: sediment metagenome


text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

text: live

text: Generic

text: Salmonella enterica subsp. enterica serovar Montevideo str. SARB31

text: Montevideo

characteristic: serovar

text: enterica

characteristic: sub species


Lophelia pertusa Genome Sequencing

text: University of Nordland

text: live

text: Generic

text: A live L. pertusa specimen sample (isolate NL-1) was collected at Nord-Leksa, Norway, immediately preserved in liquid nitrogen until DNA extraction. Approximately five coral polyps with corallites were crushed with a mortar and pestle and digested using Tissue Lysis buffer and proteinase K, before standard protocol of the High Pure PCR Template Preparation Kit from Roche were followed. The DNA was extracted by phenol/chloroform and diluted in water.

characteristic: description

text: Desmophyllum pertusum

text: SOLiD Fragment sequencing of Lophelia pertusa genome


characteristic: External Id

text: University of Florida

text: live

text: Generic

text: Nylanderia

text: Application of metagenomics and pyrosequencing to facilitate discovery of potential viral natural enemies of the invasive Caribbean crazy ant, Nylanderia pubens (Forel)


text: Yunnan Agricultural University

characteristic: INSDC center name

text: live

text: Generic

text: mesophyll

characteristic: cell type

text: Plants are grown for a month until there are four to six euphyllas per plant. They are then inoculated with Phytophthora infestans. After 3-4 days, when signs of disease are seen, RNA is obtained from the leaves. Growth conditions: Temperature:day/night23oC/18oC, Relative humidity: day/night 50%/70%, Light application time: 14h/d, 15000Lx

text: leaf

characteristic: organ

text: Solanum lycopersicum

text: hermaphrodite

characteristic: sex

text: leaf

characteristic: tissue-type

text: LL1028 Solanum lycopersicum (Lycopersicon esculentum) leaf inoculated with Phytophthora infestans cDNA library

text: Plasmid

text: pUM-T

characteristic: vector


text: Boys Town National Research Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: 3' RACE product generated by the used of specific primers for exon 48 of the mouse Vlgr1 (Gpr98) gene. RNA was extracted from whole inner ear, DNAse treated and used for rapid amplification of cDNA ends. Three micrograms of total RNA were used for 3' RACE, performed with the SMARTer RACE Amplification kit. Running conditions were set as to obtain products no longer than 5-kb and according to the manufacturer instructions. The 3'RACE specific primer sequence was CAGGAAGCTGTCAAGTACGGCATTTCACC.

text: Post-natal day 3

characteristic: dev-stage

text: Inner ear

text: Mus musculus

characteristic: strain

text: Mouse post-natal day 3 inner ear


text: Marco Blanchette, Stowers Institute for Medical Research

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: catalog

text: anti-RNAPII H-224

characteristic: chip antibody

text: Homo sapiens

characteristic: organism

text: Cell culture

text: PolII Chip-Seq

characteristic: title

text: Santa Cruz Biotechnology

characteristic: vendor


characteristic: External Id

text: Huazhong University of Science and Technology

characteristic: INSDC center name

text: live

text: Generic

text: Ganoderma lucidum

text: XiangNong No.1


Orobanche pancicii

text: Ludwig-Maximilians-Universität München

text: live

text: Generic

text: source: flowers, stems and leaves

characteristic: description

text: Orobanche pancicii

text: Orobanche pancicii Beck


text: Liu, Entomology, Auburn University

characteristic: INSDC first public

text: live

text: Generic

text: fourth instar

characteristic: larval stage

text: Culex quinquefasciatus

text: Low permethrin resistant strain HAmCqG0

text: whole insect

characteristic: tissue

text: HAmCqG0 mRNA


text: Liu, Entomology, Auburn University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: fourth instar

text: Culex quinquefasciatus

text: High permethrin resistant strain HAmCqG8

text: whole insect

text: HAmCqG8 mRNA


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: culture-collection

text: environmental isolate

characteristic: isolate type

text: Salmonella enterica subsp. enterica serovar Montevideo str. ATCC BAA710

characteristic: project name

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

characteristic: serovar

text: ATCC BAA710

characteristic: strain

text: enterica

characteristic: sub species


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental isolate

text: Salmonella enterica subsp. enterica serovar Montevideo str. LQC 10

characteristic: organism

text: PMID: 21345093

text: Montevideo

text: LQC 10

text: enterica

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: environmental isolate

text: Salmonella enterica subsp. enterica serovar Montevideo str. 29N

text: PMID: 21345093

text: Montevideo

text: enterica


text: clinical/research, human

characteristic: IFSAC+ Category

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Homo sapiens

characteristic: host

text: environmental isolate

characteristic: ontological term

text: Salmonella enterica subsp. enterica serovar Montevideo str. 42N

text: PMID: 21345093

text: Montevideo

text: Human

characteristic: source type

text: enterica


characteristic: INSDC secondary accession

text: live

text: Generic

text: environmental isolate

characteristic: isolate type

text: Salmonella enterica subsp. enterica serovar Montevideo str. 4441 H

characteristic: project name

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

characteristic: serovar

text: 4441 H

text: enterica


text: vegetable row crops (leafy)

characteristic: IFSAC Category

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: fda lab id

text: environmental isolate

text: iceberg head of lettuce

characteristic: isolation source

text: butterhead lettuce plant:FOODON_03412084, iceberg:ENVO_01001546

text: Salmonella enterica subsp. enterica serovar Montevideo str. 80959-06

text: PMID: 21345093

text: Montevideo

text: Food

characteristic: strain

text: enterica

characteristic: sub species


characteristic: External Id

text: clinical/research, human

characteristic: IFSAC+ Category

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Homo sapiens

text: environmental isolate

text: Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035278

characteristic: organism

text: PMID: 21345093

text: Montevideo

text: Human

text: enterica

characteristic: title


text: multi-ingredient, other (flavoring or seasoning), pork

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: environmental isolate

characteristic: isolate type

text: pepper salami

text: black or white pepper product:FOODON_00001649, salami:FOODON_03312067

characteristic: ontological term

text: Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035318

characteristic: project name

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

characteristic: serovar

text: Food

characteristic: source type

text: enterica


characteristic: IFSAC Category

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental isolate

text: pepper salami

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035320

text: PMID: 21345093

text: Montevideo

text: Food

characteristic: strain

text: enterica


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: environmental isolate

text: Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035321

text: PMID: 21345093

text: Montevideo

text: enterica

characteristic: sub species


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: environmental isolate

characteristic: isolate type

text: Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035327

characteristic: organism

text: PMID: 21345093

text: Montevideo

text: enterica

characteristic: title


text: live

text: Generic

text: environmental isolate

text: Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008286

characteristic: project name

text: PMID: 21345093

characteristic: reference for biomaterial

text: Montevideo

characteristic: serovar

text: enterica


text: Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: hours at 37 degrees

text: Saccharomyces cerevisiae

characteristic: replicate number

text: trm44 tan1 deletion strain containing tRNASer(CGA) U6:A67 mutant

text: trm44del tan1del tRNASer(CGA) U6:A67 (JMW561) 0 hr Replicate 3


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: Saccharomyces cerevisiae

characteristic: strain

text: trm44del tan1del tRNASer(CGA) U6:A67 (JMW561) 6 hr Replicate 1


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) U6:A67 (JMW561) 6 hr Replicate 2


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) U6:A67 (JMW561) 6 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

characteristic: organism

text: Wild type strain

text: WT(JMW007) 0 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 0 hr Replicate 2

characteristic: title


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 0 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 0 hr Replicate 4


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 0.5 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 0.5 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 0.5 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 0.5 hr Replicate 4


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 1.5 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 1.5 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 1.5 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 3 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 3 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 3 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 3 hr Replicate 4


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 6 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 6 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Wild type strain

text: WT(JMW007) 6 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 0 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 0 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 0 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 0 hr Replicate 4


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 0 hr Replicate 5


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 0 hr Replicate 6


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 0 hr Replicate 7


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 1.5 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 1.5 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 1.5 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 3 hr Replicate 1


text: Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology

text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 3 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 3 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 3 hr Replicate 4


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 3 hr Replicate 5


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 3 hr Replicate 6


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 3 hr Replicate 7


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 6 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 6 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 6 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 6 hr Replicate 4


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 6 hr Replicate 5


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain

text: trm44del tan1del (JMW119) 6 hr Replicate 6


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 0 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 0 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 0 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 0 hr Replicate 4


text: Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology

text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 0 hr Replicate 5


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 0 hr Replicate 6


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 0 hr Replicate 7


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 1.5 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 1.5 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 1.5 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 3 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 3 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 3 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 3 hr Replicate 4


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 3 hr Replicate 5


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 3 hr Replicate 6


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 3 hr Replicate 7


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 6 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 6 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 6 hr Replicate 3


text: Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology

text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 6 hr Replicate 4


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 6 hr Replicate 5


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 met22 deletion strain

text: trm44del tan1del met22del (LY1729) 6 hr Replicate 6


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 xrn1 deletion strain

text: trm44del tan1del xrn1del (ISC850) 0 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 xrn1 deletion strain

text: trm44del tan1del xrn1del (ISC850) 0 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 xrn1 deletion strain

text: trm44del tan1del xrn1del (ISC850) 0 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 xrn1 deletion strain

text: trm44del tan1del xrn1del (ISC850) 3 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 xrn1 deletion strain

text: trm44del tan1del xrn1del (ISC850) 3 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 xrn1 deletion strain

text: trm44del tan1del xrn1del (ISC850) 3 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 xrn1 deletion strain

text: trm44del tan1del xrn1del (ISC850) 6 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 xrn1 deletion strain

text: trm44del tan1del xrn1del (ISC850) 6 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 xrn1 deletion strain

text: trm44del tan1del xrn1del (ISC850) 6 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0 hr Replicate 4


text: Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology

text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0.1 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0.1 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0.1 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0.1 hr Replicate 4


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0.5 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0.5 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0.5 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm8 trm4 deletion strain

text: trm8del trm4del (JMW009) 0.5 hr Replicate 4


text: live

text: Generic

text: Saccharomyces cerevisiae

text: met22 deletion strain

text: met22del (JMW510) 0 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: met22 deletion strain

text: met22del (JMW510) 0 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: met22 deletion strain

text: met22del (JMW510) 0 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: met22 deletion strain

text: met22del (JMW510) 3 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: met22 deletion strain

text: met22del (JMW510) 3 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: met22 deletion strain

text: met22del (JMW510) 3 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: met22 deletion strain

text: met22del (JMW510) 6 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: met22 deletion strain

text: met22del (JMW510) 6 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: met22 deletion strain

text: met22del (JMW510) 6 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: xrn1 deletion strain

text: xrn1del (ISC725) 0 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: xrn1 deletion strain

text: xrn1del (ISC725) 0 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: xrn1 deletion strain

text: xrn1del (ISC725) 0 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: xrn1 deletion strain

text: xrn1del (ISC725) 3 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: xrn1 deletion strain

text: xrn1del (ISC725) 3 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: xrn1 deletion strain

text: xrn1del (ISC725) 3 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: xrn1 deletion strain

text: xrn1del (ISC725) 6 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: xrn1 deletion strain

text: xrn1del (ISC725) 6 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: xrn1 deletion strain

text: xrn1del (ISC725) 6 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain containing tRNASer(CGA) G51:C63 C6:G67 G2:C71 mutant

text: trm44del tan1del tRNASer(CGA) G51:C63 C6:G67 G2:C71 (JMW1251) 0 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) G51:C63 C6:G67 G2:C71 (JMW1251) 0 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) G51:C63 C6:G67 G2:C71 (JMW1251) 0 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) G51:C63 C6:G67 G2:C71 (JMW1251) 6 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) G51:C63 C6:G67 G2:C71 (JMW1251) 6 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) G51:C63 C6:G67 G2:C71 (JMW1251) 6 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain containing tRNASer(CGA) G51:C63 mutant

text: trm44del tan1del tRNASer(CGA) G51:C63 (JMW316) 0 hr Replicate 1


text: Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology

text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) G51:C63 (JMW316) 0 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) G51:C63 (JMW316) 0 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) G51:C63 (JMW316) 6 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) G51:C63 (JMW316) 6 hr Replicate 2


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) G51:C63 (JMW316) 6 hr Replicate 3


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44 tan1 deletion strain containing tRNASer(CGA) U6:A67 mutant

text: trm44del tan1del tRNASer(CGA) U6:A67 (JMW561) 0 hr Replicate 1


text: live

text: Generic

text: Saccharomyces cerevisiae

text: trm44del tan1del tRNASer(CGA) U6:A67 (JMW561) 0 hr Replicate 2


text: clinical/research

characteristic: IFSAC+ Category

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: environmental isolate

characteristic: isolate type

characteristic: ontological term

text: Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729

characteristic: project name

text: PMID: 21345093

text: Pomona

text: ATCC 10729

text: enterica

characteristic: sub species


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Geneva

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Homo sapiens

text: female

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: Geneva

characteristic: submitter handle

text: Sample from a human female participant in the dbGaP study HAPO Maternal Glycemia and Birthweight GEI Study


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Geneva

text: Homo sapiens

characteristic: organism

text: female

text: Prospective Longitudinal Cohort

text: HAPO Maternal Glycemia and Birthweight GEI Study

text: Geneva


text: dbGaP

text: live

text: Generic

text: Geneva

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

text: Geneva

text: Sample from a human male participant in the dbGaP study HAPO Maternal Glycemia and Birthweight GEI Study

characteristic: title


text: Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences

text: live

text: Generic

characteristic: NCBI submission model

text: Suppression subtractive hybridization (SSH) library of the halophyte Karelinia caspica under salt stress

characteristic: description

text: whole plant

characteristic: organ

text: Karelinia caspia

text: SSH library of Karelinia caspica under salt stress (Liu-2011)

text: pGEM T-Easy

characteristic: vector


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission package

text: DNA

characteristic: analyte type

text: eMERGE

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

text: Geisinger eMERGE - MyCode Project

text: No

characteristic: subject is affected

text: eMERGE

text: DNA sample from a human male participant in the dbGaP study Geisinger eMERGE - MyCode Project


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: eMERGE

text: Homo sapiens

text: female

text: Case-Control

characteristic: study design

text: Geisinger eMERGE - MyCode Project

characteristic: study name

text: No

characteristic: submitted sample id

characteristic: submitted subject id

text: eMERGE

characteristic: submitter handle

text: DNA sample from a human female participant in the dbGaP study Geisinger eMERGE - MyCode Project


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: eMERGE

text: Yes

characteristic: is technical control

text: Homo sapiens

characteristic: organism

text: male

text: Case-Control

text: Geisinger eMERGE - MyCode Project

text: No

text: eMERGE

characteristic: title


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

characteristic: analyte type

text: eMERGE

characteristic: biospecimen repository

text: Yes

text: Homo sapiens

text: female

text: Case-Control

text: Geisinger eMERGE - MyCode Project

text: No

text: eMERGE


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: eMERGE

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: Blood

characteristic: histological type

text: Yes

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

text: Geisinger eMERGE - MyCode Project

text: No

characteristic: subject is affected

text: eMERGE

text: DNA sample from Blood of a human female participant in the dbGaP study Geisinger eMERGE - MyCode Project


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: eMERGE

text: Blood

text: Blood

text: Homo sapiens

text: male

text: Case-Control

characteristic: study design

text: Geisinger eMERGE - MyCode Project

characteristic: study name

text: No

characteristic: submitted sample id

characteristic: submitted subject id

text: eMERGE

characteristic: submitter handle

text: DNA sample from Blood of a human male participant in the dbGaP study Geisinger eMERGE - MyCode Project


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: eMERGE

text: Blood

text: Blood

text: Homo sapiens

characteristic: organism

text: female

text: Case-Control

text: Geisinger eMERGE - MyCode Project

text: No

text: eMERGE

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

characteristic: analyte type

text: eMERGE

characteristic: biospecimen repository

text: Blood

text: Blood

text: Yes

characteristic: is technical control

text: Homo sapiens

text: male

text: Case-Control

text: Geisinger eMERGE - MyCode Project

text: No

text: eMERGE


text: Texas A&M University

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 2, Brazoria NWR, Texas, February 2009

characteristic: description

text: sediment metagenome

text: Comparison of Brazoria NWR sediment bacterial communities


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 2, Brazoria NWR, Texas, June 2009

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 2, Brazoria NWR, Texas, October 2009

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 5, Brazoria NWR, Texas, February 2009

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 5, Brazoria NWR, Texas, June 2009

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 5, Brazoria NWR, Texas, October 2009

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 6, Brazoria NWR, Texas, February 2009

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 6, Brazoria NWR, Texas, June 2009

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 6, Brazoria NWR, Texas, October 2009

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 9, Brazoria NWR, Texas, February 2009

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 9, Brazoria NWR, Texas, June 2009

text: sediment metagenome


text: Texas A&M University

text: live

text: Generic

text: 16S rRNA gene pyro-tags from sediment collected from Brazoria 9, Brazoria NWR, Texas, October 2009

text: sediment metagenome


Chimpanzee newborn

text: Partner Institute for Computational Biology

text: live

text: Generic

text: We prepared chimpanzee newborn sample using pooled total RNA from PFC of five individuals (0-45 days old). PFC dissections were made from the frontal part of the superior frontal gyrus. Total RNA was isolated using Trizol® reagent (Invitrogen, Carlsbad, CA). Oligo(dT) selection was performed twice using Oligotex® mRNA Midi Kit (Qiagen). After selection, 100 ng mRNA was first fragmented by addition of 5X fragmentation buffer (200 mM Tris acetate, pH 8.2, 500 mM potassium acetate and 150 mM magnesium acetate) and heating at 94 °C for 2 min 30 s in a thermocycler, then transferred to ice and run over a Sephadex-G50 column (USA Scientific) to remove the fragmentation ions. We used random hexamer primers (Invitrogen, Cat. No. 48190-011) for reverse transcription of fragmented mRNA to double-strand cDNA. Sequencing libraries were prepared according to the paired-end sample preparation protocol (http://www.illumina.com). Sample was sequenced in a separate lane in the Illumina® Genome Analyzer II system, using the 75-bp paired-end sequencing protocol.

text: Pan troglodytes

text: Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques


Chimpanzee young

text: live

text: Generic

text: We prepared chimpanzee young sample using pooled total RNA from PFC of five individuals (6-44 years old). PFC dissections were made from the frontal part of the superior frontal gyrus. Total RNA was isolated using Trizol® reagent (Invitrogen, Carlsbad, CA). Oligo(dT) selection was performed twice using Oligotex® mRNA Midi Kit (Qiagen). After selection, 100 ng mRNA was first fragmented by addition of 5X fragmentation buffer (200 mM Tris acetate, pH 8.2, 500 mM potassium acetate and 150 mM magnesium acetate) and heating at 94 °C for 2 min 30 s in a thermocycler, then transferred to ice and run over a Sephadex-G50 column (USA Scientific) to remove the fragmentation ions. We used random hexamer primers (Invitrogen, Cat. No. 48190-011) for reverse transcription of fragmented mRNA to double-strand cDNA. Sequencing libraries were prepared according to the paired-end sample preparation protocol (http://www.illumina.com). Sample was sequenced in a separate lane in the Illumina® Genome Analyzer II system, using the 75-bp paired-end sequencing protocol.

text: Pan troglodytes


Macaque newborn

text: live

text: Generic

text: We prepared macaque newborn sample using pooled total RNA from PFC of five individuals (0-7 days old). PFC dissections were made from the frontal part of the superior frontal gyrus. Total RNA was isolated using Trizol® reagent (Invitrogen, Carlsbad, CA). Oligo(dT) selection was performed twice using Oligotex® mRNA Midi Kit (Qiagen). After selection, 100 ng mRNA was first fragmented by addition of 5X fragmentation buffer (200 mM Tris acetate, pH 8.2, 500 mM potassium acetate and 150 mM magnesium acetate) and heating at 94 °C for 2 min 30 s in a thermocycler, then transferred to ice and run over a Sephadex-G50 column (USA Scientific) to remove the fragmentation ions. We used random hexamer primers (Invitrogen, Cat. No. 48190-011) for reverse transcription of fragmented mRNA to double-strand cDNA. Sequencing libraries were prepared according to the paired-end sample preparation protocol (http://www.illumina.com). Sample was sequenced in a separate lane in the Illumina® Genome Analyzer II system, using the 75-bp paired-end sequencing protocol.

text: Macaca mulatta


Macaque young

text: live

text: Generic

text: We prepared macaque young sample using pooled total RNA from PFC of five individuals (8-14 years old). PFC dissections were made from the frontal part of the superior frontal gyrus. Total RNA was isolated using Trizol® reagent (Invitrogen, Carlsbad, CA). Oligo(dT) selection was performed twice using Oligotex® mRNA Midi Kit (Qiagen). After selection, 100 ng mRNA was first fragmented by addition of 5X fragmentation buffer (200 mM Tris acetate, pH 8.2, 500 mM potassium acetate and 150 mM magnesium acetate) and heating at 94 °C for 2 min 30 s in a thermocycler, then transferred to ice and run over a Sephadex-G50 column (USA Scientific) to remove the fragmentation ions. We used random hexamer primers (Invitrogen, Cat. No. 48190-011) for reverse transcription of fragmented mRNA to double-strand cDNA. Sequencing libraries were prepared according to the paired-end sample preparation protocol (http://www.illumina.com). Sample was sequenced in a separate lane in the Illumina® Genome Analyzer II system, using the 75-bp paired-end sequencing protocol.

text: Macaca mulatta


D. miranda MSH22 virgin male

text: University of California, Berkeley

text: live

text: Generic

text: Male virgin flies were collected from a D. miranda strain MSH22 which has been inbred for 5 generations.

text: Drosophila miranda

text: D. miranda MSH22 male


BMG-transcriptome

text: Shaanxi Normal University

text: live

text: Generic

text: Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

text: Lotus corniculatus

text: Lotus cornioulatus Transcriptome via Illumina Second Generation Sequen


Chimpanzee newborn CBC

text: live

text: Generic

text: We prepared chimpanzee newborn sample using pooled total RNA from CBC of five individuals (0-45 days old). CBC dissections were made from the cerebellar cortex. Total RNA was isolated using Trizol* reagent (Invitrogen, Carlsbad, CA). Oligo(dT) selection was performed twice using Oligotex* mRNA Midi Kit (Qiagen). After selection, 100 ng mRNA was first fragmented by addition of 5X fragmentation buffer (200 mM Tris acetate, pH 8.2, 500 mM potassium acetate and 150 mM magnesium acetate) and heating at 94 *C for 2 min 30 s in a thermocycler, then transferred to ice and run over a Sephadex-G50 column (USA Scientific) to remove the fragmentation ions. We used random hexamer primers (Invitrogen, Cat. No. 48190-011) for reverse transcription of fragmented mRNA to double-strand cDNA. Sequencing libraries were prepared according to the paired-end sample preparation protocol (http://www.illumina.com). Sample was sequenced in a separate lane in the Illumina* Genome Analyzer II system, using the 75-bp paired-end sequencing protocol.

text: Pan troglodytes


Chimpanzee young CBC

text: live

text: Generic

text: We prepared chimpanzee young sample using pooled total RNA from CBC of five individuals (6-44 years old). CBC dissections were made from the cerebellar cortex. Total RNA was isolated using Trizol* reagent (Invitrogen, Carlsbad, CA). Oligo(dT) selection was performed twice using Oligotex* mRNA Midi Kit (Qiagen). After selection, 100 ng mRNA was first fragmented by addition of 5X fragmentation buffer (200 mM Tris acetate, pH 8.2, 500 mM potassium acetate and 150 mM magnesium acetate) and heating at 94 *C for 2 min 30 s in a thermocycler, then transferred to ice and run over a Sephadex-G50 column (USA Scientific) to remove the fragmentation ions. We used random hexamer primers (Invitrogen, Cat. No. 48190-011) for reverse transcription of fragmented mRNA to double-strand cDNA. Sequencing libraries were prepared according to the paired-end sample preparation protocol (http://www.illumina.com). Sample was sequenced in a separate lane in the Illumina* Genome Analyzer II system, using the 75-bp paired-end sequencing protocol.

text: Pan troglodytes


Macaque newborn CBC

text: live

text: Generic

text: We prepared macaque newborn sample using pooled total RNA from CBC of five individuals (0-7 days old). CBC dissections were made from the cerebellar cortex. Total RNA was isolated using Trizol* reagent (Invitrogen, Carlsbad, CA). Oligo(dT) selection was performed twice using Oligotex* mRNA Midi Kit (Qiagen). After selection, 100 ng mRNA was first fragmented by addition of 5X fragmentation buffer (200 mM Tris acetate, pH 8.2, 500 mM potassium acetate and 150 mM magnesium acetate) and heating at 94 *C for 2 min 30 s in a thermocycler, then transferred to ice and run over a Sephadex-G50 column (USA Scientific) to remove the fragmentation ions. We used random hexamer primers (Invitrogen, Cat. No. 48190-011) for reverse transcription of fragmented mRNA to double-strand cDNA. Sequencing libraries were prepared according to the paired-end sample preparation protocol (http://www.illumina.com). Sample was sequenced in a separate lane in the Illumina* Genome Analyzer II system, using the 75-bp paired-end sequencing protocol.

text: Macaca mulatta


Macaque young CBC

text: live

text: Generic

text: We prepared macaque young sample using pooled total RNA from CBC of five individuals (8-14 years old). CBC dissections were made from the cerebellar cortex. Total RNA was isolated using Trizol* reagent (Invitrogen, Carlsbad, CA). Oligo(dT) selection was performed twice using Oligotex* mRNA Midi Kit (Qiagen). After selection, 100 ng mRNA was first fragmented by addition of 5X fragmentation buffer (200 mM Tris acetate, pH 8.2, 500 mM potassium acetate and 150 mM magnesium acetate) and heating at 94 *C for 2 min 30 s in a thermocycler, then transferred to ice and run over a Sephadex-G50 column (USA Scientific) to remove the fragmentation ions. We used random hexamer primers (Invitrogen, Cat. No. 48190-011) for reverse transcription of fragmented mRNA to double-strand cDNA. Sequencing libraries were prepared according to the paired-end sample preparation protocol (http://www.illumina.com). Sample was sequenced in a separate lane in the Illumina* Genome Analyzer II system, using the 75-bp paired-end sequencing protocol.

text: Macaca mulatta


text: University of Southern California

text: live

text: Generic

text: Homo sapiens

text: C4-2B - Runx2


C4-2B - Input

text: University of Southern California

text: live

text: Generic

text: Homo sapiens

text: C4-2B - Input


text: Institute of Plant and Microbial Biology, Academia Sinica, Taiwan

text: live

text: Generic

text: Arabidopsis thaliana

text: GFP-expressing protoplasts


text: live

text: Generic

text: Arabidopsis thaliana

text: nonGFP sample