text: ENCODE DCC

text: live

text: Generic

text: rabbit monoclonal

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K27) marks repressed chromatin regions

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Cell Signaling

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: malignant pluripotent embryonal carcinoma (Ntera2), The NTERA-2 cl.D1 cell line is a pluripotent human testicular embryonal carcinoma cell line derived by cloning the NTERA-2 cell line. - ATCC. (PMID: 6694356)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

text: tier 1


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: antibody

text: Rabbit monoclonal antibody

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K4) marks promoters in chromatin regions

text: Cell Signaling

text: ATCC

text: cancer

text: inner cell mass

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: ChIP-Seq

text: USC

text: Farnham - University of Southern California

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: rabbit monoclonal

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Cell Signaling

characteristic: antibody vendorname

text: PBMC cells provided by E. Bresnick, UW Madison

characteristic: biomaterial provider

text: PBMC

characteristic: cell

text: Peripheral blood mononuclear cells

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

text: tier 1

text: PBMC


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

characteristic: cell karyotype

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: ChIP-Seq

text: USC

characteristic: lab description

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit monoclonal antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Cell Signaling

characteristic: antibody vendorname

characteristic: biomaterial provider

text: PBMC

characteristic: cell

text: Peripheral blood mononuclear cells

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: PBMC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K36) marks actively transcribed chromatin regions

characteristic: antibody targetdescription

text: Cell Signaling

text: ATCC

text: Osteosarcoma from the tibia of a 15 year old human female, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972. (PMID: 6081590)

text: cancer

characteristic: cell karyotype

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: ChIP-Seq

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: tier 1

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Input

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal, ChIP grade

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

text: cancer

characteristic: cell karyotype

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: ChIP-Seq

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: rabbit polyclonal, ChIP grade

text: Abcam

characteristic: biomaterial provider

text: PBMC

characteristic: cell

text: Peripheral blood mononuclear cells

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

text: tier 1

text: PBMC

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal, ChIP grade

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

text: cancer

characteristic: cell karyotype

text: inner cell mass

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: ChIP-Seq

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: rabbit polyclonal

text: Cell Signaling

text: ATCC

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: cancer

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

text: tier 1

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal

characteristic: antibody antibodydescription

text: Histone H3 (acetyl K9) marks promoters in chromatin regions

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

text: cancer

characteristic: cell karyotype

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: ChIP-Seq

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: rabbit polyclonal

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

characteristic: cell description

text: cancer

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

characteristic: line

text: Homo sapiens

text: tier 1

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: PBMC

characteristic: cell

text: Peripheral blood mononuclear cells

text: mesoderm

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: ChIP-Seq

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description

text: PBMC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: rabbit polyclonal

text: Abcam

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

text: tier 1

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cancer

text: inner cell mass

text: human

text: M

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: ChIP-Seq

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit monoclonal antibody

text: Cell Signaling

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: ChIP-Seq

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

text: tier 1

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit monoclonal

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Cell Signaling

characteristic: antibody vendorname

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: cancer

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: ChIP-Seq

text: USC

characteristic: lab description

characteristic: line

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: tier 1

characteristic: replicate description


characteristic: External Id

text: Chromatin dynamics, Nuclear Dynamics and Genome Plasticity, Institut Curie

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Hela S3 stably expressing H3.3-FLAG-HA

characteristic: cell line specifics

text: anti-FLAG [Sigma, Catalog #: A2220, Lot #: 040M6007]

characteristic: chip antibody

text: Homo sapiens

text: Hela S3 cells

text: H3.3 IP

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Hela S3 stably expressing H3.1-FLAG-HA

text: Homo sapiens

text: Hela S3 cells

text: H3.1 IP


text: live

text: Generic

text: Hela S3 stably expressing H3.3-FLAG-HA

text: Homo sapiens

text: Hela S3 cells

text: input H3.3


text: live

text: Generic

text: Hela S3 stably expressing H3.1-FLAG-HA

text: Homo sapiens

text: Hela S3 cells

text: input H3.1


text: Institute of Pathology, Charité Universitätsmedizin

text: live

text: Generic

text: B-cell

characteristic: cell type

text: MYC antibody (N-262 Santa Cruz, CA, USA)

text: Homo sapiens

text: Raji

text: B-cell lymphoma cell line

characteristic: strain


text: live

text: Generic

text: B-cell

text: Homo sapiens

characteristic: organism

text: B-cell lymphoma cell line


text: live

text: Generic

text: B-cell

text: Homo sapiens

text: Ramos

text: B-cell lymphoma cell line


text: live

text: Generic

text: B-cell

text: No antibody (Input control)

text: Homo sapiens

text: Raji

text: B-cell lymphoma cell line


text: live

text: Generic

text: B-cell

text: No antibody (Input control)

text: Homo sapiens

text: B-cell lymphoma cell line


text: live

text: Generic

text: B-cell

text: No antibody (Input control)

text: Homo sapiens

text: Ramos

text: B-cell lymphoma cell line


Microbialite diversity

text: UNAM

text: live

text: Generic

text: Pyrosequences obtained from distant microbialite communities in Mexico. Total environmental DNA was extracted from microbialite subsamples (n = 6 per location) and pooled into one compound sample per location (n = 10) that was PCR amplified, using universal 16S rRNA gene primers TX9 (5’-GGATTAGAWACCCBGGTAGTC-3’) and 1391R (5’ GACGGGCRGTGWGTRCA-3’). A second round of PCR was performed using fusion primers that incorporated barcodes, and the 454 pyrosequencing adaptor A onto the 5’ end of the TX9 primer, and adaptor B onto the 5’ end of the 1391R primer. Pool has following samples Sample ID Sample Description Barcode SE Sian ka'an Estromatolito CTGCGA SE 1 water column control for SE CAGTACG ST Sian ka'an mat CTATAGCTG ST 2 Water column control for ST ATTGCACG BP Bacalar Piratas ATGCTGTA BP 3 water column control for BP ATTAGC BM Bacalar Medio TGATGC BM 4 water column control for BM CGAGCT BR Bacalar Rapidos ATCGTC BR 5 water column control for BR ACGATACG RM Rio Mezquites ACTGAC RM 6 water column control for RM ATATCGTAC PI Pozas azueles I TGTCACGT PI 7 water column control for PI TCAGGT PII Pozas azueles II TCCTGACG PII 8 water column control for PII CGTCTAGTA AC Alchichica Columnar ACTACTATG AC 9 water column control for AC AGACTATACTA AE Alchichica stromatolite CACTCG AE 10 water column control for AE TACGACGT

characteristic: description

text: Wallal virus

text: Patterns in microbialite genetic composition relate to environmental variables


text: University College Cork

text: live

text: Generic

characteristic: antibody catalog number

characteristic: antibody lot

text: Santa Cruz

characteristic: antibody vendor

characteristic: cell line

text: mammary gland epithelial cells

text: Homo sapiens

characteristic: read length

text: Mammary gland epithelial cells, untreated, SRC1 ChIP

text: vehicle control

characteristic: treatment


characteristic: External Id

text: University College Cork

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Santa Cruz

text: mammary gland epithelial cells

characteristic: chip antibody

text: Homo sapiens

text: Mammary gland epithelial cells, tamoxifen treated, SRC1 ChIP

text: tamoxifen


text: University College Cork

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: mammary gland epithelial cells

text: Homo sapiens

text: Mammary gland epithelial cells, input

characteristic: title

text: vehicle control


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

characteristic: SRA accession

text: Mycobacteroides abscessus subsp. bolletii 2B-0912-S

characteristic: organism

characteristic: strain

text: Mycobacterium massiliense 2B-0912-S


text: live

text: Generic

text: Vibrio cholerae HC-59A1

text: Vibrio cholerae HC-59A1


text: Baylor College of Medicine

text: live

text: Generic

text: Drosophila ficusphila

characteristic: description

text: Drosophila ficusphila

characteristic: stock number

text: Drosophila ficusphila


text: Baylor College of Medicine

text: live

text: Generic

text: Drosophila kikkawai

text: Drosophila kikkawai

text: Drosophila kikkawai


text: Baylor College of Medicine

text: live

text: Generic

text: Drosophila rhopaloa

text: Drosophila rhopaloa

text: Drosophila rhopaloa


text: Baylor College of Medicine

text: live

text: Generic

text: Drosophila takahashii

text: Drosophila takahashii

text: Drosophila takahashii


text: Beijing Genome Institute

text: live

text: Generic

characteristic: age

text: A Metagenome-Wide Association Study of gut microbiota identifies markers associated with Type 2 Diabetes based on next generation sequencing technology

text: female

characteristic: gender

text: China

characteristic: nation

text: human gut metagenome

text: T2D metagenomics


characteristic: External Id

text: Beijing Genome Institute

characteristic: INSDC center name

text: live

text: Generic

text: male

text: China

text: human gut metagenome

text: T2D metagenomics


RNA-seq of WT-2489

text: Heidelberg University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Total RNA was prepared with peqGOLD TriFAST from light grown WT liquid cultures. mRNA was purified and cDNA was prepared using RNA Sample Prep Kit from Illumina. Cluster generation was performed on the Illumina cBot using Single Read Cluster Kit (GD-300-1001). Unpaired sequencing with 72-bp reads was conducted on an Illumina Genome Analyzer IIx.

text: Neurospora crassa OR74A

text: RNA-seq raw reads, Neurospora crassa WT-2489


RNA-seq of csp1 knock-out-1

text: Heidelberg University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Total RNA was prepared with peqGOLD TriFAST from light grown liquid cultures of csp1 ko strain (FGSC#11348) . mRNA was purified and cDNA was prepared using RNA Sample Prep Kit from Illumina. Cluster generation was performed on the Illumina cBot using Single Read Cluster Kit (GD-300-1001). Unpaired sequencing with 72-bp reads was conducted on an Illumina Genome Analyzer IIx.

text: Neurospora crassa OR74A

text: RNA-seq raw reads, Neurospora crassa csp1 knock-out, replicate 1


RNA-seq of csp1 kncok-out-2

text: Heidelberg University

text: live

characteristic: INSDC status

text: Generic

text: Neurospora crassa OR74A

text: RNA-seq raw reads, Neurospora crassa csp1 knock-out, replicate 2


RNA-seq of R1 mutant

text: Heidelberg University

text: live

text: Generic

characteristic: NCBI submission model

text: Total RNA was prepared with peqGOLD TriFAST from light grown R1 liquid cultures. mRNA was purified and cDNA was prepared using RNA Sample Prep Kit from Illumina. Cluster generation was performed on the Illumina cBot using Single Read Cluster Kit (GD-300-1001). Unpaired sequencing with 72-bp reads was conducted on an Illumina Genome Analyzer IIx.

text: Neurospora crassa OR74A

text: RNA-seq raw reads, Neurospora crassa csp1 over-expressing strain,R1


BV-T

text: Zhejiang University

text: live

text: Generic

characteristic: NCBI submission package

text: The human vaginal microbiota from 30 cases of bacterial vaginosis after treated with metronidazole (BV-M, 500mg, 7 days) intravaginally, 25 cases of bacterial vaginosis after treated with probiotic Lactobacillus (BV-L, more than 10E 09 CFU, 10 days) intravaginally, 30 cases of bacterial vaginosis without treatment (BV) and 30 cases of healthy control (CN). For the two actively treatment groups, the vaginal swabs were taken 5 days after the last administration of the medication. Clinical Trial Registration: ChiCTR-TRC-11001484 (www.chictr.org)

text: human metagenome

text: Vaginal swabs


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Adult (mixed gender)

characteristic: life cycle stage information

text: Necator americanus

characteristic: sample id

characteristic: sample name

text: adult

characteristic: stage

text: anhui

text: Necator americanus Anhui

characteristic: title


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: SRA accession

text: Bacillus sp. 1NLA3E

characteristic: description

text: Bacillus sp. 1NLA3E

characteristic: organism

characteristic: strain

text: Generic sample from Bacillus sp. 1NLA3E


O. niloticus adult testis

characteristic: External Id

text: University of Maryland

text: live

text: Generic

text: Oreochromis niloticus

text: O. niloticus adult testis RNA


O. niloticus adult retina

text: University of Maryland

characteristic: INSDC center name

text: live

text: Generic

text: Oreochromis niloticus

text: O. niloticus adult retina RNA


O. niloticus embryonic RNA

text: University of Maryland

characteristic: INSDC first public

text: live

text: Generic

text: Oreochromis niloticus

text: O. niloticus embryonic RNA


text: Université Laval

characteristic: INSDC last update

text: live

text: Generic

text: 20 pooled glass eels from St. Lawrence estuary (RB sample) Each individual identified by a specific barcode. Individual name (Tag): RB_01 (ACGAGTGCGT) RB_02 (ACGCTCGACA) RB_03 (AGACGCACTC) RB_04 (AGCACTGTAG) RB_05 (ATCAGACACG) RB_06 (ATATCGCGAG) RB_07 (CGTGTCTCTA) RB_08 (CTCGCGTGTC) RB_09 (TCTCTATGCG) RB_10 (TGATACGTCT) RB_11 (CATAGTAGTG) RB_12 (CGAGAGATAC) RB_13 (ATACGACGTA) RB_14 (TCACGTACTA) RB_15 (CGTCTAGTAC) RB_16 (TCTACGTAGC) RB_17 (TGTACTACTC) RB_18 (ACGACTACAG) RB_19 (CGTAGACTAG) RB_20 (TACGAGTATG)

text: Anguilla rostrata


text: Université Laval

characteristic: INSDC secondary accession

text: live

text: Generic

text: 20 pooled glass eels from Florida (FL sample) Each individual indetified by a specific barcode. Individual name (Tag): FL_01 (ACGAGTGCGT) FL_02 (ACGCTCGACA) FL_03 (AGACGCACTC) FL_04 (AGCACTGTAG) FL_05 (ATCAGACACG) FL_06 (ATATCGCGAG) FL_07 (CGTGTCTCTA) FL_08 (CTCGCGTGTC) FL_09 (TCTCTATGCG) FL_10 (TGATACGTCT) FL_11 (CATAGTAGTG) FL_12 (CGAGAGATAC) FL_13 (ATACGACGTA) FL_14 (TCACGTACTA) FL_15 (CGTCTAGTAC) FL_16 (TCTACGTAGC) FL_17 (TGTACTACTC) FL_18 (ACGACTACAG) FL_19 (CGTAGACTAG) FL_20 (TACGAGTATG)

text: Anguilla rostrata


text: Friedrich Miescher Institute for Biomedical Research

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody

text: Abcam

characteristic: antibody vendor

text: ES-derived neural progenitor cells

characteristic: cell type

text: Mus musculus

text: Neural progenitor cells

text: Mixed (129-C57Bl/6)


text: Baylor College of Medicine

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Drosophila eugracilis

text: Drosophila eugracilis

characteristic: stock number

text: Drosophila eugracilis


text: Kunming University of Science and Technology

text: live

text: Generic

text: extracted from the roots treated with 0 mM and 100 mM nitrate solution for 0, 2, 4, 8, 24, 48, and 72h, respectively

characteristic: dev-stage

text: E.coli DH5alpha

characteristic: lab-host

text: Apium graveolens

text: root

characteristic: tissue-type

text: Root supression subtractive hybridization cDNA library of celery

characteristic: title

text: pGEM-T Easy Vector

characteristic: vector


characteristic: External Id

text: Western Fisheries Research Center

text: live

text: Generic

text: Pacific herring post infection with VHSV

characteristic: description

text: spleen

characteristic: organ

text: Clupea pallasii

characteristic: organism

text: Subtractive suppression hybridization analysis from naive and infected herring


text: Genoscope - Centre National de Sequencage

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rhopalosiphum maidis

text: whole body

text: Rhopalosiphum maidis whole body parthenogenetic females, adults and larvae of various stages


text: live

characteristic: INSDC status

text: Generic

text: Acyrthosiphon kondoi

text: whole body

text: Acyrthosiphon kondoi whole body parthenogenetic females, adults and larvae of various stages


text: Moredun Research Institute

text: live

text: Generic

text: Psoroptes ovis

text: Psoroptes ovis library (Burgess S)


text: UMR CNRS 7144 Adaptation et Diversite en Milieu Marin

text: live

text: Generic

text: Adult

text: Gill

text: Bathymodiolus azoricus

text: Gill

text: Bathymodiolus cDNA library

text: Plasmid

text: PGEM.


text: Universidade Federal do Rio Grande do Norte

text: live

text: Generic

text: Telson

text: Tityus stigmurus

text: Venom glands

text: Scorpion Tityus stigmurus cDNA library

text: Plasmid


text: Chung-Ang University College of Medicine

text: live

text: Generic

text: Suppression Subtractive Hybridization

text: Lactococcus garvieae

text: Suppression Subtractive Hybridization library of Lactococcus garvieae

text: Plasmid

text: pCR 2.1


Heliconius erato Sd RAD mapping

text: Ecology and Evolutionary Biology Department, University of California, Irvine

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: A single locus dubbed Short band (Sd) controls forewing band shape variation in H. erato and H. himera and was previously assigned to a linkage group {Kapan et al., 2006; Sheppard et al., 1985}. Here we fine-mapped the Sd locus using Restriction-associated Amplified DNA (RAD) mapping {Davey et al., 2011}. In short, this technique generates dense Single Nucleotide Polymorphism (SNP) data on a genome-wide scale using next-generation sequencing, and achieves high coverage using a restriction-based complexity reduction step . In this case, we sequenced two pools of 25 siblings, each corresponding to one of homozygous Sd phenotypes produced in a H. himera x H. erato notabilis F2 brood, and looked for SNPs perfectly associated with each pool.

text: Heliconius erato

text: Heliconius erato Sd RAD mapping, Nco-restricted, two pools of 25 Sd-homozygous F2 individuals


name: Transcriptome database of Paradoxornis webbianus bulomachu

text: National Taiwan Normal University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Sinosuthora webbiana bulomacha

text: bulomacha

characteristic: sub species

text: Characterization of transcriptome from a single individual of an ecologically important avian species, the vinous-throated parrotbill (Paradoxornis webbianus bulomachus) and its implications for adaptation genetics


PRJNA68155.C236-11_Tube 2_A

text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. C236-11

text: C236-11_Tube 2_A

characteristic: sample name

characteristic: strain

text: Escherichia coli O104:H4 str. C236-11


text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 04-8351

text: Generic sample from Escherichia coli O104:H4 str. 04-8351

characteristic: title


text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 09-7901

text: Generic sample from Escherichia coli O104:H4 str. 09-7901


text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 11-3677

text: Escherichia coli O104:H4 str. 11-3677


text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 11-3798

text: Generic sample from Escherichia coli O104:H4 str. 11-3798


text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 11-4404

text: Escherichia coli O104:H4 str. 11-4404


text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 11-4522

text: Escherichia coli O104:H4 str. 11-4522


text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 11-4623

text: Escherichia coli O104:H4 str. 11-4623


PRJNA68275.Ec11-4632 C1_A

text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 11-4632 C1

text: Ec11-4632 C1_A

text: 11-4632 C1


PRJNA68275.Ec11-4632 C2_A

text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 11-4632 C2

text: Ec11-4632 C2_A

text: 11-4632 C2


PRJNA68275.Ec11-4632 C3_A

text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 11-4632 C3

text: Ec11-4632 C3_A

text: 11-4632 C3


PRJNA68275.Ec11-4632 C4_A

text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 11-4632 C4

text: Ec11-4632 C4_A

text: 11-4632 C4


PRJNA68275.Ec11-4632 C5_A

text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. 11-4632 C5

text: Ec11-4632 C5_A

text: 11-4632 C5


text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. Ec11-5536

text: Generic sample from Escherichia coli O104:H4 str. Ec11-5536


text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. Ec11-5537

text: Generic sample from Escherichia coli O104:H4 str. Ec11-5537


text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. Ec11-5538

text: Generic sample from Escherichia coli O104:H4 str. Ec11-5538


PRJNA68153.C227-11_Tube 2_A

text: Broad Institute

text: live

text: Generic

text: Escherichia coli O104:H4 str. C227-11

text: C227-11_Tube 2_A

text: Escherichia coli O104:H4 str. C227-11


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: NU>>

characteristic: culture-collection

text: Candida tenuis ATCC 10573 pooled conditions

text: normalized

characteristic: library description

text: normalized

characteristic: library type

text: Yamadazyma tenuis ATCC 10573

text: ATCC 10573

text: Generic sample from Candida tenuis ATCC 10573


Cl, Sw, WR clonal lines

characteristic: External Id

text: University of California, Davis

text: live

text: Generic

text: Oncorhynchus mykiss

text: Clearwater, Swanson, and Whale Rock rainbow trout clonal lines.


WR x Sw DH001-36

text: University of California, Davis

text: live

text: Generic

text: Doubled haploid progeny that were generated from a Whale Rock x Swanson F1 hybrid through androgenesis.

characteristic: description

text: Oncorhynchus mykiss

characteristic: organism

text: Doubled haploid progeny DH001-36


text: UVA

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus


WR x Sw DH037-65

text: University of California, Davis

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Oncorhynchus mykiss

text: Doubled haploid progeny DH037-65


MEF

text: UVA

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: MEF


WR x Sw DH066-94

text: University of California, Davis

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Oncorhynchus mykiss

text: Doubled haploid progeny DH066-94


WR x Sw DH095-123

text: University of California, Davis

text: live

text: Generic

text: Oncorhynchus mykiss

text: Doubled haploid progeny DH095-123


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

characteristic: host sex

text: No

characteristic: is tumor

text: antecubital fossa

characteristic: isolation source

characteristic: molecular data type

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Human metagenome DNA sample from antecubital fossa of a male participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: HMP

text: male

text: No

text: antecubital fossa

text: human metagenome

characteristic: organism

text: Prospective Longitudinal Cohort

text: Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: male

text: No

text: volar forearm

text: human metagenome

text: Prospective Longitudinal Cohort

text: Human metagenome DNA sample from volar forearm of a male participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


text: dbGaP

text: live

text: Generic

text: DNA

text: HMP

text: male

characteristic: host sex

text: No

characteristic: is tumor

text: popliteal fossa

characteristic: isolation source

characteristic: molecular data type

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

text: Human metagenome DNA sample from popliteal fossa of a male participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: HMP

text: male

text: No

text: nare

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: submitted subject id

characteristic: submitter handle

text: Human metagenome DNA sample from nare of a male participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: HMP

text: female

text: No

text: antecubital fossa

text: human metagenome

characteristic: organism

text: Prospective Longitudinal Cohort

text: Human metagenome DNA sample from antecubital fossa of a female participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMP

text: female

characteristic: host sex

text: No

characteristic: is tumor

text: volar forearm

characteristic: isolation source

characteristic: molecular data type

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: study design

text: Human metagenome DNA sample from volar forearm of a female participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: HMP

text: female

text: No

text: popliteal fossa

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: study name

characteristic: submitted sample id

text: Human metagenome DNA sample from popliteal fossa of a female participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: HMP

text: female

text: No

text: nare

text: human metagenome

text: Prospective Longitudinal Cohort

characteristic: submitted subject id

characteristic: submitter handle

text: Human metagenome DNA sample from nare of a female participant in the dbGaP study Skin Microbiome in Disease States: Atopic Dermatitis and Immunodeficiency


text: Western Fisheries Research Center

text: live

text: Generic

text: Pacific herring post infection with VHSV; 5' and 3' RACE libraries for herring Mx.

characteristic: description

text: spleen

characteristic: organ

text: Clupea pallasii

characteristic: organism

text: MX 5' and 3' RACE from VHSV infected spleens

characteristic: title


characteristic: External Id

text: University of Wisconsin, Madison

characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus castaneus

text: male

characteristic: sex

text: CAST/Ei

characteristic: strain

text: CHORI-26 Mouse CAST/Ei BAC Library


text: University of Arizona

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: SampleName Description BarcodeSequence LinkerPrimerSequence ReversePrimer M09.1 A. mellifera 9-day-old midgut AGCTCATG CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT M09.2 A. mellifera 9-day-old midgut CACTCTACTG CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT M09.3 A. mellifera 9-day-old midgut CTATCGTACG CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT M30.1 A. mellifera 30-day-old midgut TGCGATATCG CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT I09.1 A. mellifera 9-day-old ileum AGCAGTAG CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT I09.2 A. mellifera 9-day-old ileum CTGTCAGA CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT I09.3 A. mellifera 9-day-old ileum CTAGCATGCT CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT I30.1 A. mellifera 30-day-old ileum TGATATCGCG CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT R09.1 A. mellifera 9-day-old rectum CATGTCGA CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT R09.2 A. mellifera 9-day-old rectum CGAGCTAGCT CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT R09.3 A. mellifera 9-day-old rectum CTCGTATACG CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT R30.1 A. mellifera 30-day-old rectum TGCGATCGTA CTAAACTYAAAKGAATTGACGG TACGGYTACCTTGTTACGACTT

text: Apis mellifera

text: Total gDNA from the midgut of a midgut, ileum or rectum from honey bee worker


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: internode

text: Brassica napus var. napobrassica RBT-Internode

text: 3 month old plant

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Brassica napus subsp. rapifera

text: Generic sample from Brassica napus var. napobrassica


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: leaf

text: Brassica napus var. napobrassica RBT-Leaf

text: 3 month old plant

text: standard

text: standard

text: Brassica napus subsp. rapifera


text: live

text: Generic

text: hypocotyl

text: Brassica napus var. napobrassica RBT-Hypocotyl

characteristic: description

text: 3 month old plant

text: standard

text: standard

text: Brassica napus subsp. rapifera


text: live

text: Generic

text: root

text: Brassica napus var. napobrassica RBT-Roots

text: 3 month old plant

text: standard

text: standard

text: Brassica napus subsp. rapifera


text: live

text: Generic

text: seedling

text: Brassica napus var. napobrassica RBT-Seedling

text: 1 week old plant

text: standard

text: standard

text: Brassica napus subsp. rapifera


text: live

text: Generic

text: developing seeds

text: Brassica napus var. napobrassica RBT-D-Seeds

text: standard

text: standard

text: Brassica napus subsp. rapifera


Ethanol tolerant E. coli MG1655

text: Columbia University

text: live

text: Generic

text: Barcoded/multiplexed pool including HGDE3. Three base bar codes come immediately after the adapter. HGDE3 is bar code CCT. The corresponding wild type strain is bar code AAT. Bar codes GGT and CGT were used in the same sample for an unrelated experiment.

text: Escherichia coli str. K-12 substr. MG1655

text: HGDE3 (Laboratory-evolved ethanol tolerant MG1655)


454 reads from InlammoBiota Trial A

text: University of Vienna

text: live

text: Generic

text: Bacteria

text: Pooled 16S rRNA gene sequences


name: Transcrptome analysis of citrus red mite

text: College of Plant Protection southwest university

text: live

text: Generic

text: Panonychus citri

text: citrus red mite (Panonychus citri)


individual 6330

text: McMaster University

text: live

text: Generic

text: Agilent array to enrich for Y.pestis sequences. DNA was extracted from a tooth from individual 6330 from the East Smithfield excavation (a burial pit from mediaeval London).

text: human oral metagenome

text: human oral metagenome


individual 8291

text: McMaster University

text: live

text: Generic

text: Agilent array to enrich for Y.pestis sequences. DNA was extracted from a tooth from individual 8291 from the East Smithfield excavation (a burial pit from mediaeval London).

text: human oral metagenome

text: human oral metagenome


individual 11972

text: McMaster University

text: live

text: Generic

text: Agilent array to enrich for Y.pestis sequences. DNA was extracted from a tooth from individual 11972 from the East Smithfield excavation (a burial pit from mediaeval London).

text: human oral metagenome

text: human oral metagenome


individual 8124

text: McMaster University

text: live

text: Generic

text: Agilent array to enrich for Y.pestis sequences. DNA was extracted from a tooth from individual 8124 from the East Smithfield excavation (a burial pit from mediaeval London).

text: human oral metagenome

text: human oral metagenome


blank

text: McMaster University

text: live

text: Generic

text: blank sample for metagenomic experiment where DNA was extracted from a tooth from four individuals from the East Smithfield excavation (a burial pit from mediaeval London).

text: human oral metagenome

text: blank sample for metagenomic experiment


pooled sample

text: McMaster University

text: live

text: Generic

text: pooled samples of the tooth extracts.

text: human oral metagenome

text: pooled samples of the tooth extracts


text: IDOM, School of Medicine, University of Pennsylvania

text: live

text: Generic

text: TCF7L1 (M-20)

characteristic: antibody

characteristic: cell line

text: Mus musculus

text: 5 though 12

characteristic: passage

text: 3T3-L1 cells

text: 24 hours of adipogenic stimuli

characteristic: treatment


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

text: live

text: Generic

text: marine metagenome

characteristic: organism

text: Generic sample from marine metagenome

characteristic: title


text: Individual

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: source: Mixed stages

text: Bursaphelenchus xylophilus

characteristic: strain

text: Generic sample from Bursaphelenchus xylophilus


text: Individual

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: source: Mixed stages

text: Bursaphelenchus mucronatus

text: Generic sample from Bursaphelenchus mucronatus


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

characteristic: NCBI submission package

text: Mycobacteroides abscessus 3A-0122-R

text: Mycobacterium abscessus 3A-0122-R


text: NHLBI - Lab of Molecular Immunology

text: live

text: Generic

characteristic: SRA accession

text: anti-H3K4me1 (Abcam Ab8895-100)

text: T-helper 2 cells

characteristic: cell type

text: WT

characteristic: genotype/variation

text: Mus musculus

text: T-helper 2 cells

text: Th2-WT-H3K4me1 [Methyl-Seq]


text: NHLBI - Lab of Molecular Immunology

text: live

text: Generic

text: anti-H3K4me3 (Millipore 17-614)

characteristic: antibody

text: T-helper 2 cells

text: WT

text: Mus musculus

text: T-helper 2 cells

text: Th2-WT-H3K4me3 [Methyl-Seq]


text: State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University

text: live

text: Generic

text: Total RNA was isolated from Toxoplasma gondii tachyziotes using Trizol reagent (Invitrogen) following the manusfacturer's protocol. full-length cDNA synthesis were performed using Advantage 2 PCR Kit (Clontech). The cDNA was then directly used for cDNA library construction by using the SMART cDNA Library Construction Kit (Clontech). Screened genes were sequenced using forward specific primer(5'CGGGAAGCGCGCCATTGTGTT3') .

characteristic: description

text: Toxoplasma gondii

text: SfiIA

text: SfiIB

text: Whole body

characteristic: tissue-type

text: cDNA library of tachyziotes of Toxoplasma gondii RH strain

characteristic: vector


characteristic: External Id

text: Gansu Agricultural University

characteristic: INSDC center name

text: live

text: Generic

text: Favorita

characteristic: cultivar

text: Potato tuber dormancy and sprouting revealed by suppression subtractive hybridization library

text: Sprouted microtuber (2 mm to 5 mm long buds)

characteristic: dev-stage

text: Solanum tuberosum

text: Tuber

text: Suppression subtractive hybridization library of potato tuber dormancy and sprouting

text: Plasmid

text: pGEM-T Easy Vector system


text: University of Calgary - Sun Center of Excellence for Visual Genomics

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ESTs derived from stems of Chelidonium majus.

text: Chelidonium majus

characteristic: organism

characteristic: title


HeLa

text: University of Southern California

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: HeLa


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ESTs derived from roots of Chelidonium majus.

text: Chelidonium majus


text: live

text: Generic

text: Eschscholzia californica


text: live

text: Generic

text: Papaver somniferum


S2R+ cell line small RNA

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

text: D. melanogaster S2R+ (less than 200nt)


P.dactylifera fruit transcriptome

text: Joint Center for Genomics Research (JCGR), King Abdulaziz City for Science and Technology (KACST) and Chinese Academy of Sciences (CAS), Riyadh 11442, Kingdom of Saudi Arabia

text: live

text: Generic

text: Phoenix dactylifera

text: Profiling Date Palm (Phoenix dactylifera, L.) Fruiting Genes Based on Next-Generation Sequencing


T7 Rice

text: University of California, Davis - Comai Lab

text: live

text: Generic

text: Oryza sativa

text: Rice TILLING


text: live

text: Generic

text: Glaucium flavum


text: live

text: Generic

text: Papaver bracteatum


text: live

text: Generic

text: Thalictrum flavum


text: live

text: Generic

text: Stylophorum diphyllum


text: live

text: Generic

text: Corydalis cheilanthifolia


text: live

text: Generic

text: Nandina domestica


text: live

text: Generic

text: Sanguinaria canadensis


text: live

text: Generic

text: Hydrastis canadensis


text: live

text: Generic

text: Xanthorhiza simplicissima


text: live

text: Generic

text: Argemone mexicana


text: live

text: Generic

text: Berberis thunbergii


text: live

text: Generic

text: Menispermum canadense


text: live

text: Generic

text: Nigella sativa


text: Research Technology Support Facility at Michigan State University

text: live

text: Generic

text: 6 DPA

text: Plantago ovata

text: Plantago ovata 6 DPA


text: live

text: Generic

text: 10 DPA

text: Plantago ovata

text: Plantago ovata 10 DPA


GSY2694 Xylose Minus Pool

text: Stanford University School of Medicine

text: live

text: Generic

text: 21 segregants of GSY2694 that do not grow in xylose

text: Saccharomyces uvarum

text: Xylose Negative Pool -- GSY2694


text: Ryan Institute

text: live

text: Generic

text: Suppression subtractive hybridization library

text: Adult

text: Sus scrofa

text: Muscle

text: Sus scrofa muscle SSH 1 forward


text: Hebrew University of Jerusalem

text: live

text: Generic

text: library preparation using PCR-Select cDNA Subtraction kit (Clonetech) according to the manufacturer's protocol.

text: Adults

text: Bemisia tabaci

text: B biotype

characteristic: strain

text: Whole body

text: Bemisia tabaci forward SSH library

text: plasmid

text: PTZ57R/T (Fermentas)


text: Hebrew University of Jerusalem

text: live

text: Generic

characteristic: description

text: Adults

text: Bemisia tabaci

text: B biotype

text: Whole body

text: Bemisia tabaci reverse SSH library

text: plasmid

text: PTZ57R/T (Fermentas)


text: Agricultural Biotechnology Research Institute of Iran (ABRII)

text: live

text: Generic

text: Frontana

text: cDNA-AFLP Transcript derived fragments (TDFs) from wheat (Triticum aestivum) cv. Frontana leaves, defense-related genes involving in resistance to Septoria tritici blotch at nine time points from 0 houre to 24 day after inoculation by Mycosphaerella graminicola

text: 2-3 leaves

text: Leaf

characteristic: organ

text: Triticum aestivum

text: Frontana cDNA after inoculation library


text: National Bureau of Fish Genetic Resources

text: live

text: Generic

text: The library was made by suppression subtractive hybridization (SSH) method using PCR-select cDNA subtraction kit (Clontech). Total RNA was obtained from pooled tissue under hypoxia at six different time points. Subtracted cDNA were cloned into pCR 2.1 vector (Invitrogen) and sequenced with the universal M13 forward.

text: Adult

text: E. coli (DH 10B)

characteristic: lab-host

text: Brain

text: Clarias batrachus

text: RsaI

text: RsaI

text: Forward subtracted Clarias batrachus brain cDNA library

text: Plasmid

text: pCR 2.1

characteristic: vector


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Adult

text: E. coli (DH 10B)

text: Brain

text: Clarias batrachus

text: RsaI

text: RsaI

text: Reverse subtracted Clarias batrachus brain cDNA library

text: Plasmid

text: pCR 2.1


text: live

text: Generic

text: Adult

characteristic: dev-stage

text: E. coli (DH 10B)

text: Head Kidney

text: Clarias batrachus

text: RsaI

text: RsaI

text: Forward subtracted Clarias batrachus Head Kidney cDNA library

text: Plasmid

text: pCR 2.1


characteristic: INSDC first public

text: live

text: Generic

text: Adult

text: E. coli (DH 10B)

text: Head Kidney

text: Clarias batrachus

text: RsaI

text: RsaI

text: Reverse subtracted Clarias batrachus Head Kidney cDNA library

text: Plasmid

text: pCR 2.1


characteristic: INSDC last update

text: live

text: Generic

text: The library was made by suppression subtractive hybridization (SSH) method using PCR-select cDNA subtraction kit (Clontech). Total RNA was obtained from pooled tissue under hypoxia at six different time points. Subtracted cDNA were cloned into pCR 2.1 vector (Invitrogen) and sequenced with the universal M13 forward primer.

text: Adult

text: E. coli (DH 10B)

text: Heart

text: Clarias batrachus

text: RsaI

text: RsaI

text: Forward subtracted Clarias batrachus Heart cDNA library

text: Plasmid

text: pCR 2.1


text: live

text: Generic

text: Adult

text: E. coli (DH 10B)

text: Heart

text: Clarias batrachus

characteristic: organism

text: RsaI

text: RsaI

text: Reverse subtracted Clarias batrachus Heart cDNA library

text: Plasmid

text: pCR 2.1


text: live

text: Generic

text: Adult

text: E. coli (DH 10B)

text: Liver

text: Clarias batrachus

text: RsaI

text: RsaI

text: Forward subtracted Clarias batrachus Liver cDNA library

characteristic: title

text: Plasmid

text: pCR 2.1


text: live

text: Generic

text: Adult

text: E. coli (DH 10B)

text: Liver

text: Clarias batrachus

text: RsaI

text: RsaI

text: Reverse subtracted Clarias batrachus Liver cDNA library

text: Plasmid

text: pCR 2.1


text: live

text: Generic

text: Adult

text: E. coli (DH 10B)

text: Muscle

text: Clarias batrachus

text: RsaI

text: RsaI

text: Reverse subtracted Clarias batrachus Muscle cDNA library

text: Plasmid

text: pCR 2.1


text: live

text: Generic

text: Adult

text: E. coli (DH 10B)

text: Muscle

text: Clarias batrachus

text: RsaI

text: RsaI

text: Forward subtracted Clarias batrachus Muscle cDNA library

text: Plasmid

text: pCR 2.1


text: live

text: Generic

text: Adult

text: E. coli (DH 10B)

text: Spleen

text: Clarias batrachus

text: RsaI

text: RsaI

text: Reverse subtracted Clarias batrachus Spleen cDNA library

text: Plasmid

text: pCR 2.1


text: live

text: Generic

text: Adult

text: E. coli (DH 10B)

text: Spleen

text: Clarias batrachus

text: RsaI

text: RsaI

text: Forward subtracted Clarias batrachus Spleen cDNA library

text: Plasmid

text: pCR 2.1


text: University of California, Irvine

text: live

text: Generic

text: Bacterial metagenome from gull

text: Larus argentatus

text: gut metagenome

text: 10-131 bacterial metagenome from gull


text: University of California, Irvine

text: live

text: Generic

text: Bacterial metagenome from gull

text: Larus argentatus

text: gut metagenome

text: 10-122 bacterial metagenome from gull


text: University of California, Irvine

text: live

text: Generic

text: Bacterial metagenome from soil

text: soil metagenome

text: 10-245 bacterial metagenome from soil


text: University of California, Irvine

text: live

text: Generic

text: Bacterial metagenome from gull

text: Larus argentatus

text: gut metagenome

text: 10-145 bacterial metagenome from gull


text: University of California, Irvine

text: live

text: Generic

text: Bacterial metagenome from gull

text: Larus argentatus

text: gut metagenome

text: 10-186 bacterial metagenome from gull


text: University of California, Irvine

text: live

text: Generic

text: Bacterial metagenome from gull

text: Larus argentatus

text: gut metagenome

text: 10-126 bacterial metagenome from gull


text: University of California, Irvine

text: live

text: Generic

text: Bacterial metagenome from gull

text: Larus argentatus

text: gut metagenome

text: 10-240 bacterial metagenome from gull


text: University of California, Irvine

text: live

text: Generic

text: Bacterial metagenome from wastewater

text: wastewater metagenome

text: 10-248 bacterial metagenome from wastewater


text: University of California, Irvine

text: live

text: Generic

text: Bacterial metagenome from gull

text: Larus argentatus

text: gut metagenome

text: 10-241 bacterial metagenome from gull


text: Naval Medical Research Center, Biological Defense Research Directorate

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NMRC sample ID

characteristic: culture-collection

text: Bacillus cereus ATCC 10876

text: ATCC 10876

text: Bacillus cereus strain ATCC 10876 NS2969


text: University of Calgary - Sun Center of Excellence for Visual Genomics

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Amsonia hubrichtii


text: live

text: Generic

characteristic: SRA accession

text: Tabernaemontana elegans


text: live

text: Generic

text: Vinca minor


text: live

text: Generic

text: Catharanthus roseus


text: live

text: Generic

text: Rauvolfia serpentina


text: live

text: Generic

text: Lonicera japonica


text: live

text: Generic

text: Helichrysum petiolare


text: live

text: Generic

text: Toona sinensis


text: live

text: Generic

text: Dianthus superbus


text: live

text: Generic

text: Platanus occidentalis


text: live

text: Generic

text: Silene vulgaris


text: live

text: Generic

text: Centella asiatica


text: live

text: Generic

text: Acacia victoriae


text: live

text: Generic

text: ESTs derived from the root of Prunella vulgaris.

characteristic: description

text: Prunella vulgaris


Blood Un-normalised

text: Uppsala University

text: live

text: Generic

text: This is a pooled un-normalised cDNA sample prepared from RNA extracted from blood of two adult zebra finches from the captive Sheffield University study population.

text: Taeniopygia guttata

text: blood

characteristic: tissue type

text: Zebra Finch Blood Un-normalised


Spleen Normalised

text: Uppsala University

text: live

text: Generic

text: This is a pooled normalised (Trimmer) cDNA sample prepared from RNA extracted from spleen of two adult zebra finches from the captive Sheffield University study population.

text: Taeniopygia guttata

text: spleed

text: Zebra Finch Spleen Normalised


Spleen Un-normalised

text: Uppsala University

text: live

text: Generic

text: This is a pooled un-normalised cDNA sample prepared from RNA extracted from spleen of two adult zebra finches from the captive Sheffield University study population.

text: Taeniopygia guttata

text: spleen

text: Zebra Finch Spleen Un-normalised


name: 454 sequencing of Megalobrama amblycephala

text: Huazhong Agricultural University

text: live

text: Generic

text: Megalobrama amblycephala

text: An EST-based genome scan using 454 sequencing in the blunt snout bream Megalobrama amblycephala and large scale gene-associated marker development for its whole genome association studies


text: Biotech Research and Innovation Centre

text: live

text: Generic

text: E14 ESCs

characteristic: cell type

text: ChIP

characteristic: chip or dip

characteristic: chip/dip antibody

text: Mus musculus

text: embryonic stem cells


characteristic: External Id

text: Biotech Research and Innovation Centre

characteristic: INSDC center name

text: live

text: Generic

text: LKO Scr ESCs

text: ChIP

text: H3K4me3 [Tri-Methyl-Histone H3 (Lys4) (C42D8) Rabbit mAb]

text: Cell Signaling

characteristic: chip/dip antibody vendor

text: Mus musculus

text: embryonic stem cells


text: Biotech Research and Innovation Centre

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: LKO Jarid1b ESCs

text: ChIP

text: Cell Signaling

text: Mus musculus

characteristic: organism

text: embryonic stem cells


text: Shandong University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Three-leaf stage

characteristic: developmental stage

text: wide type DH4866

characteristic: genotype

text: normal condition

characteristic: growth condition

text: Zea mays

text: maize leaf

characteristic: title


text: Shandong University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Three-leaf stage

text: ZmPIS sense transgenic maize DH4866

text: normal condition

text: Zea mays

text: maize leaf


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: wide type DH4866

text: osmotic stress treatment with 18% (w/v) polyethyleneglycol-6000 (PEG-6000) for 24 hours

text: Zea mays

text: maize leaf


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: ZmPIS sense transgenic maize DH4866

text: Zea mays

text: maize leaf


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: ZmPIS antisense transgenic maize DH4866

text: Zea mays

text: maize leaf


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: wide type DH4866

text: osmotic stress treatment with 18% (w/v) polyethyleneglycol-6000 (PEG-6000) for 72 hours

text: Zea mays

text: maize leaf


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: ZmPIS sense transgenic maize DH4866

text: Zea mays

text: maize leaf


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: wide type DH4866

text: normal condition

text: Zea mays

text: maize root


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: ZmPIS sense transgenic maize DH4866

text: normal condition

text: Zea mays

text: maize root


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: wide type DH4866

text: Zea mays

text: maize root


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: ZmPIS sense transgenic maize DH4866

text: Zea mays

text: maize root


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: ZmPIS antisense transgenic maize DH4866

text: Zea mays

text: maize root


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: wide type DH4866

text: Zea mays

text: maize root


text: Shandong University

text: live

text: Generic

text: Three-leaf stage

text: ZmPIS sense transgenic maize DH4866

text: Zea mays

text: maize root


Nicotiana Illumina

text: Queen Mary University of London

text: live

text: Generic

text: genome sample at low coverage

characteristic: description

text: Nicotiana tabacum

text: DNA sample to assess repetitive DNA


text: Gordon, Pathology & Immunology, Washington University

text: live

text: Generic

text: Mus musculus

characteristic: host organism

characteristic: host strain

text: gut metagenome

text: Mouse feces

text: 1 day prior

characteristic: time of gut bacteria

text: Mouse feces 01-01


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 1 day prior

text: Mouse feces 02-01


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 1 day prior

text: Mouse feces 03-01


characteristic: INSDC secondary accession

text: live

text: Generic

text: Mus musculus

text: gut metagenome

characteristic: organism

text: Mouse feces

text: 1 day prior

text: Mouse feces 04-01


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 1 day prior

text: Mouse feces 05-01


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 1 day prior

text: Mouse feces 06-01


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 1 day prior

text: Mouse feces 07-01


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 1 day prior

text: Mouse feces 08-01


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 1 day prior

text: Mouse feces 09-01


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 1 day prior

text: Mouse feces 10-01


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 2 days prior

text: Mouse feces 01-02


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 2 days prior

text: Mouse feces 02-02


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 2 days prior

text: Mouse feces 03-02


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 2 days prior

text: Mouse feces 04-02


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 2 days prior

text: Mouse feces 05-02


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 2 days prior

text: Mouse feces 06-02


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 2 days prior

text: Mouse feces 07-02


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 2 days prior

text: Mouse feces 08-02


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 2 days prior

text: Mouse feces 09-02


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 2 days prior

text: Mouse feces 10-02


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 3 days prior

text: Mouse feces 01-03


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 3 days prior

text: Mouse feces 02-03


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 3 days prior

text: Mouse feces 03-03


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 3 days prior

text: Mouse feces 04-03


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 3 days prior

text: Mouse feces 05-03


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 3 days prior

text: Mouse feces 06-03


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 3 days prior

text: Mouse feces 07-03


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 3 days prior

text: Mouse feces 08-03


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 3 days prior

text: Mouse feces 09-03


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 3 days prior

text: Mouse feces 10-03


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 7 days prior

text: Mouse feces 01-07


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 7 days prior

text: Mouse feces 02-07


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 7 days prior

text: Mouse feces 03-07


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 7 days prior

text: Mouse feces 04-07


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 7 days prior

text: Mouse feces 05-07


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 7 days prior

text: Mouse feces 06-07


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 7 days prior

text: Mouse feces 07-07


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 7 days prior

text: Mouse feces 08-07


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 7 days prior

text: Mouse feces 09-07


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 7 days prior

text: Mouse feces 10-07


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 14 days prior

text: Mouse feces 01-14


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 14 days prior

text: Mouse feces 02-14


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 14 days prior

text: Mouse feces 03-14


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 14 days prior

text: Mouse feces 04-14


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 14 days prior

text: Mouse feces 05-14


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 14 days prior

text: Mouse feces 06-14


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 14 days prior

text: Mouse feces 07-14


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 14 days prior

text: Mouse feces 08-14


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 14 days prior

text: Mouse feces 09-14


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 14 days prior

text: Mouse feces 10-14


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 16 days prior

text: 1 and 2 days prior

characteristic: time when gavaged with fermented milk strains

text: Mouse feces 01-16


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 16 days prior

text: 1 and 2 days prior

text: Mouse feces 02-16


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 16 days prior

text: 1 and 2 days prior

text: Mouse feces 03-16


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 16 days prior

text: 1 and 2 days prior

text: Mouse feces 04-16


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 16 days prior

text: 1 and 2 days prior

text: Mouse feces 05-16


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 16 days prior

text: 1 and 2 days prior

text: Mouse feces 06-16


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 16 days prior

text: 1 and 2 days prior

text: Mouse feces 07-16


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 16 days prior

text: 1 and 2 days prior

text: Mouse feces 08-16


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 16 days prior

text: 1 and 2 days prior

text: Mouse feces 09-16


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 16 days prior

text: 1 and 2 days prior

text: Mouse feces 10-16


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 17 days prior

text: 2 and 3 days prior

text: Mouse feces 01-17


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 17 days prior

text: 2 and 3 days prior

text: Mouse feces 02-17


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 17 days prior

text: 2 and 3 days prior

text: Mouse feces 03-17


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 17 days prior

text: 2 and 3 days prior

text: Mouse feces 04-17


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 17 days prior

text: 2 and 3 days prior

text: Mouse feces 05-17


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 17 days prior

text: 2 and 3 days prior

text: Mouse feces 06-17


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 17 days prior

text: 2 and 3 days prior

text: Mouse feces 07-17


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 17 days prior

text: 2 and 3 days prior

text: Mouse feces 08-17


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 17 days prior

text: 2 and 3 days prior

text: Mouse feces 09-17


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 17 days prior

text: 2 and 3 days prior

text: Mouse feces 10-17


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 21 days prior

text: 6 and 7 days prior

text: Mouse feces 01-21


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 21 days prior

text: 6 and 7 days prior

text: Mouse feces 02-21


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 21 days prior

text: 6 and 7 days prior

text: Mouse feces 03-21


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 21 days prior

text: 6 and 7 days prior

text: Mouse feces 04-21


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 21 days prior

text: 6 and 7 days prior

text: Mouse feces 05-21


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 21 days prior

text: 6 and 7 days prior

text: Mouse feces 06-21


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 21 days prior

text: 6 and 7 days prior

text: Mouse feces 07-21


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 21 days prior

text: 6 and 7 days prior

text: Mouse feces 08-21


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 21 days prior

text: 6 and 7 days prior

text: Mouse feces 09-21


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 21 days prior

text: 6 and 7 days prior

text: Mouse feces 10-21


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 23 days prior

text: 1, 2, 8 and 9 days prior

text: Mouse feces 06-23


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 23 days prior

text: 1, 2, 8 and 9 days prior

text: Mouse feces 07-23


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 23 days prior

text: 1, 2, 8 and 9 days prior

text: Mouse feces 08-23


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 23 days prior

text: 1, 2, 8 and 9 days prior

text: Mouse feces 09-23


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 23 days prior

text: 1, 2, 8 and 9 days prior

text: Mouse feces 10-23


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 24 days prior

text: 2, 3, 9 and 10 days prior

text: Mouse feces 06-24


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 24 days prior

text: 2, 3, 9 and 10 days prior

text: Mouse feces 07-24


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 24 days prior

text: 2, 3, 9 and 10 days prior

text: Mouse feces 08-24


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 24 days prior

text: 2, 3, 9 and 10 days prior

text: Mouse feces 09-24


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 24 days prior

text: 2, 3, 9 and 10 days prior

text: Mouse feces 10-24


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 28 days prior

text: 13 and 14 days prior

text: Mouse feces 01-28


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 28 days prior

text: 13 and 14 days prior

text: Mouse feces 02-28


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 28 days prior

text: 13 and 14 days prior

text: Mouse feces 03-28


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 28 days prior

text: 13 and 14 days prior

text: Mouse feces 04-28


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 28 days prior

text: 13 and 14 days prior

text: Mouse feces 05-28


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 28 days prior

text: 6, 7, 13 and 14 days prior

text: Mouse feces 06-28


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 28 days prior

text: 6, 7, 13 and 14 days prior

text: Mouse feces 07-28


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 28 days prior

text: 6, 7, 13 and 14 days prior

text: Mouse feces 08-28


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 28 days prior

text: 6, 7, 13 and 14 days prior

text: Mouse feces 09-28


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 28 days prior

text: 6, 7, 13 and 14 days prior

text: Mouse feces 10-28


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 35 days prior

text: 20 and 21 days prior

text: Mouse feces 01-35


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 35 days prior

text: 20 and 21 days prior

text: Mouse feces 02-35


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 35 days prior

text: 20 and 21 days prior

text: Mouse feces 03-35


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 35 days prior

text: 20 and 21 days prior

text: Mouse feces 04-35


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 35 days prior

text: 20 and 21 days prior

text: Mouse feces 05-35


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 35 days prior

text: 13, 14, 20 and 21 days prior

text: Mouse feces 06-35


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 35 days prior

text: 13, 14, 20 and 21 days prior

text: Mouse feces 07-35


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 35 days prior

text: 13, 14, 20 and 21 days prior

text: Mouse feces 08-35


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 35 days prior

text: 13, 14, 20 and 21 days prior

text: Mouse feces 09-35


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 35 days prior

text: 13, 14, 20 and 21 days prior

text: Mouse feces 10-35


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 37 days prior

text: 1, 2, 15, 16, 22 and 23 days prior

text: Mouse feces 06-37


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 37 days prior

text: 1, 2, 15, 16, 22 and 23 days prior

text: Mouse feces 07-37


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 37 days prior

text: 1, 2, 15, 16, 22 and 23 days prior

text: Mouse feces 08-37


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 37 days prior

text: 1, 2, 15, 16, 22 and 23 days prior

text: Mouse feces 09-37


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 37 days prior

text: 1, 2, 15, 16, 22 and 23 days prior

text: Mouse feces 10-37


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 38 days prior

text: 2, 3, 16, 17, 23 and 24 days prior

text: Mouse feces 06-38


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 38 days prior

text: 2, 3, 16, 17, 23 and 24 days prior

text: Mouse feces 07-38


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 38 days prior

text: 2, 3, 16, 17, 23 and 24 days prior

text: Mouse feces 08-38


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 38 days prior

text: 2, 3, 16, 17, 23 and 24 days prior

text: Mouse feces 09-38


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 38 days prior

text: 2, 3, 16, 17, 23 and 24 days prior

text: Mouse feces 10-38


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 27 and 28 days prior

text: Mouse feces 01-42


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 27 and 28 days prior

text: Mouse feces 02-42


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 27 and 28 days prior

text: Mouse feces 03-42


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 27 and 28 days prior

text: Mouse feces 04-42


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 27 and 28 days prior

text: Mouse feces 05-42


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 6, 7, 20, 21, 27 and 28 days prior

text: Mouse feces 06-42


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 6, 7, 20, 21, 27 and 28 days prior

text: Mouse feces 07-42


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 6, 7, 20, 21, 27 and 28 days prior

text: Mouse feces 08-42


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 6, 7, 20, 21, 27 and 28 days prior

text: Mouse feces 09-42


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 6, 7, 20, 21, 27 and 28 days prior

text: Mouse feces 10-42


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 27 and 28 days prior

text: Mouse feces 01-C


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 27 and 28 days prior

text: Mouse feces 02-C


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 27 and 28 days prior

text: Mouse feces 03-C


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 27 and 28 days prior

text: Mouse feces 04-C


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 27 and 28 days prior

text: Mouse feces 05-C


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 6, 7, 20, 21, 27 and 28 days prior

text: Mouse feces 06-C


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 6, 7, 20, 21, 27 and 28 days prior

text: Mouse feces 07-C


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 6, 7, 20, 21, 27 and 28 days prior

text: Mouse feces 08-C


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 6, 7, 20, 21, 27 and 28 days prior

text: Mouse feces 09-C


text: live

text: Generic

text: Mus musculus

text: gut metagenome

text: Mouse feces

text: 42 days prior

text: 6, 7, 20, 21, 27 and 28 days prior

text: Mouse feces 10-C


Nicotiana tomentosiformis

text: Queen Mary University of London

text: live

text: Generic

text: genome sample at low coverage

text: Nicotiana tomentosiformis

text: genome sampling to assess repetitive DNA


Nicotiana sylvestris

text: Queen Mary University of London

text: live

text: Generic

text: genome sample at low coverage

text: Nicotiana sylvestris

text: genome sample to assess repetitive DNA: N. sylvestris


Nicotiana tabacum synthetic TR1-A

text: Queen Mary University of London

text: live

text: Generic

text: Nicotiana tabacum

text: genome sample to assess repetitive DNA in synthetic tobacco


ABAZUTEDNA

text: Rockefeller University

text: live

text: Generic

text: To compare the biosynthetic potentials of different soil microbiomes, environmental DNA (eDNA) samples extracted directly from three geographically distinct arid regions of the American Southwest [the Sonoran desert of Arizona (AZ), the Anza-Borrego section of the Sonoran desert of California (AB) and the Great Basin desert of Utah (UT)] were used to construct three independent eDNA libraries Sample collection, DNA isolation and library construction: Topsoil was collected from three arid sites in the Southwestern United States: the Sonoran desert of Arizona (AZ), the Anza-Borrego section of the Sonoran desert of California (AB) and the Great Basin desert of Utah (UT). All samples were collected in the summer months from undistributed environments that were representative of the terrain and vegetation generally seen in these three deserts. Each sample was sifted through fine mesh to break up large dirt particles and remove rocks and large vegetative material. DNA was then extracted directly from the sift soils. DNA extraction and library construction were carried out using published protocols (S1). Briefly: Each dirt sample was incubated at 70 °C in lysis buffer [2% sodium dodecyl sulfate (w/v), 100 mM Tris-HCl, 100 mM ethylenediaminetetraacetic acid (EDTA), 1.5 M NaCl, 1% cetyl trimethyl-ammonium bromide (w/v)] for two hours. Large particulates were then removed by centrifugation (4,000xg, 30 min) and crude eDNA was precipitated from the resulting supernatant with the addition of 0.6 volumes of isopropyl alcohol. Precipitated DNA was collected by centrifugation (4,000 x g 30 min), washed with 70% ethanol and resuspended in a minimum volume of TE (10 mM Tris, 1 mM EDTA, pH 8). The remaining soil material was separated from the DNA by preparative agarose gel electrophoresis (1% agarose, 0.5x Tris/Borate/EDTA, 16 hours, 20 V). High-molecular-weight DNA was electroeluted from the agarose, blunt ended (Epicentre, End-It), ligated into the SmaI site of either pWEB or pWEBTNC, packaged into lambda phage, and transfected into E. coli EC100. Each library was expanded to contain at least 10,000,000 unique eDNA cosmid clones. To facilitate future clone recovery efforts libraries were arrayed as unique 5000-membered sublibraries consisting of matching minipreps and glycerol stock pairs (S2). Cosmid DNA minipreped from the pool of clones contained in each library was used for PCR screening as described below.

text: Bernardetia litoralis

text: Soil Samples


text: J. Craig Venter Institute

text: live

text: Generic

text: marine metagenome

characteristic: sample id

text: marine metagenome


leaf

text: CSIR-National Botanical Research Institute

text: live

text: Generic

text: Azadirachta indica

text: Azadirachta indica leaf

characteristic: title


seed

text: live

characteristic: INSDC status

text: Generic

text: Azadirachta indica

text: Azadirachta indica leaf


text: Genoscope - Centre National de Sequencage

text: live

text: Generic

characteristic: NCBI submission model

characteristic: dev-stage

text: Myzus ascalonicus

text: whole body

characteristic: tissue-type

text: Myzus ascalonicus whole body parthenogenetic females, adults and larvae of various stages


MA line 1

text: The Salk Institute for Biological Studies

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Identification of spontaneously occurring epigenetic variation of DNA methylation and small RNAs in a population of Arabidopsis that has been grown for 30 generations of single-seed descent growth.

characteristic: description

text: Arabidopsis thaliana

text: 30 Generation Epigenome Sequencing


PRJNA173489.S aureus_6

text: Broad Institute

text: live

text: Generic

text: Staphylococcus aureus

text: S aureus_6

characteristic: sample name

text: Generic sample from Staphylococcus aureus


PRJNA173489.S aureus_4

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Staphylococcus aureus

text: S aureus_4


PRJNA173489.S aureus_2

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Staphylococcus aureus

text: S aureus_2


PRJNA173489.S aureus_7

text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Staphylococcus aureus

text: S aureus_7


PRJNA173489.S aureus_5

text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Staphylococcus aureus

text: S aureus_5


PRJNA173489.S aureus_8

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Staphylococcus aureus

text: S aureus_8


PRJNA173489.S aureus_3

text: Broad Institute

text: live

text: Generic

text: Staphylococcus aureus

characteristic: organism

text: S aureus_3


text: Broad Institute

text: live

text: Generic

text: female

characteristic: host sex

text: Generic sample from Clostridiales bacterium ORNL_6EZ5-Gt_5_Pl1-54


PRJNA173489.S aureus_9

text: Broad Institute

text: live

text: Generic

text: Staphylococcus aureus

text: S aureus_9


gut microbiota and chemostat samples

text: Institute of Microbiology, Chinese Academy of Sciences

text: live

text: Generic

text: we compared the bacterial compositions originated from human and chicken gut microbiota.

text: Homo sapiens

text: human and chicken gut microbiota and their cultured microbiota in chemostat systems


text: Max Delbrueck Center for Molecular Medicine

text: live

text: Generic

text: Worm cultures for Dauer larvae were grown in liquid S-medium at 22 *C. Each new culture was seeded with 105 embryos for the Dauer sample per 500 ml medium. We added 200µl Nystatin (50mg/ml stock in DMSO) and 500µl Kanamycin (20mg/ml stock solution) to the culture medium to prevent fungal and bacterial contamination. On day 1, 5 and 8 12.5 ml of OP50 (20% w/v stock in S-medium) were added as food source. Dauer larvae were harvested at day 12.

text: Caenorhabditis elegans

text: Dauer sample from Caenorhabditis elegans


text: University of Rochester

text: live

text: Generic

text: active

characteristic: activity level

text: Mus musculus

text: skeletal muscle

text: gastrocnemius

characteristic: tissue


text: University of Rochester

text: live

characteristic: INSDC status

text: Generic

text: active

text: Mus musculus

text: skeletal muscle

text: quadriceps

characteristic: title


text: University of Rochester

text: live

text: Generic

characteristic: NCBI submission model

text: active

text: Mus musculus

text: skeletal muscle

text: tibialis anterior


text: University of Rochester

text: live

text: Generic

text: active

text: Mus musculus

text: skeletal muscle

text: triceps


text: University of Rochester

text: live

text: Generic

text: sedentary

text: Mus musculus

text: skeletal muscle

text: gastrocnemius


text: University of Rochester

text: live

text: Generic

text: sedentary

text: Mus musculus

text: skeletal muscle

text: quadriceps


text: University of Rochester

text: live

text: Generic

text: sedentary

text: Mus musculus

text: skeletal muscle

text: tibialis anterior


text: University of Rochester

text: live

text: Generic

text: sedentary

text: Mus musculus

text: skeletal muscle

text: triceps


text: Sandmeyer, Biological Chemistry, University of CA, Irvine

text: live

text: Generic

text: MATα ura3-52 trp1-∆63 his3-∆200 ade2-101 lys2o leu2-∆1

characteristic: genotype/variation

text: Saccharomyces cerevisiae

text: Ty3 transposition in wt cells

characteristic: strain


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: MATα ura3-52 trp1-∆63 his3-∆200 ade2-101 lys2o leu2-∆1, rad52∆

text: Saccharomyces cerevisiae

text: Ty3 transposition in rad52 deletion cells


text: Corden Lab, Molecular Bio and Gen, JHU

text: live

text: Generic

text: UV Power-Shot 1100 Lamp

characteristic: crosslinking device

text: Saccharomyces cerevisiae

text: Sen1 HTB with Arc Lamp Crosslinking

text: Sen1 HTB with Arc Lamp Crosslinking


characteristic: External Id

text: Corden Lab, Molecular Bio and Gen, JHU

text: live

text: Generic

text: UV Power-Shot 1100 Lamp

text: Saccharomyces cerevisiae

text: Nrd1 HTB with Arc Lamp Crosslinking

text: Nrd1 HTB with Arc Lamp Crosslinking


text: Corden Lab, Molecular Bio and Gen, JHU

characteristic: INSDC center name

text: live

text: Generic

text: UV Power-Shot 1100 Lamp

text: Saccharomyces cerevisiae

text: Rpb2 HTB with Arc Lamp Crosslinking

text: Rpb2 HTB with Arc Lamp Crosslinking


text: Corden Lab, Molecular Bio and Gen, JHU

characteristic: INSDC first public

text: live

text: Generic

text: Stratalinker

text: Saccharomyces cerevisiae

text: Nrd1 HTB with Stratalinker Crosslinking

text: Nrd1 HTB with Stratalinker Crosslinking