characteristic: External Id

text: Complete Genomics Inc.

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: GM12886 male unaffected Ceph/utah pedigree 1463 sample, son

characteristic: description

text: Homo sapiens


status: PUBLIC

text: New Mexico State University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: juvenile

tag: attribute

characteristic: dev-stage

text: Xenopus tropicalis

characteristic: organism

text: inner ear

characteristic: tissue-type

text: Xenopus tropicalis juvenile ear cDNA library

characteristic: title

text: phage

characteristic: vector


text: New Mexico State University

text: live

text: Generic

text: juvenile

text: Xenopus laevis

text: inner ear

text: Xenopus laevis juvenile ear cDNA library

text: phage


text: CSIRO Ecosystem Sciences

text: live

text: Generic

text: Collected near Canberra, Australia. Entire primary collaterial glands from a single gravid female. The cDNA library was constructed from mRNA according to the method described in Walker et al. (2012) PLoS ONE 7(2): e30408

text: adult female gravid

text: primary collaterial gland

characteristic: organ

text: Tenodera australasiae

text: female

characteristic: sex

text: Tenodera australasiae primary collaterial gland library


text: CSIRO Ecosystem Sciences

text: live

text: Generic

text: adult female gravid

text: primary collaterial gland

text: Archimantis monstrosa

text: female

text: Archimantis monstrosa primary collaterial gland library


text: Chinese National Human Genome Center at Shanghai

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Hepatitis B virus

text: P47 non-tumorous liver tissue


Pelargonium x hortorum

characteristic: External Id

text: UTAustin

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Ringo White

characteristic: cultivar

text: Leaf and inflorescence samples were collected and frozen liquid nitrogen from live plants of Pelargonium x hortorum cv. Ringo White grown in the University of Texas (UT) greenhouse. Leaves were of two developmental stages, newly emerged and fully expanded. Entire inflorescences were harvested prior to anthesis. Root samples of P. x hortorum were harvested from specimens aseptically grown in agar media

text: Pelargonium x hortorum

text: Pelargonium x hortorum cv. Ringo White


text: CONICET - Universidad Nacional de Rosario

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Dixiland

text: fruit

text: Prunus persica

text: mesocarp

text: Peach fruit after harvest Lib


text: Fisheries College, Ocean University of China

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Application of suppression subtractive hybridization to construct a subtractive cDNA library from hepatopancreas of clam Venerupis philippinarum exposed to Endosulfan.

characteristic: description

text: two years old

text: Ruditapes philippinarum

text: male and female

text: hepatopancreas

text: Subtractive cDNA library from Venerupis philippinarum exposed to Endosulfan

text: Plasmid

text: PMD 18-T


text: College of Agriculture, South China Agricultural University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Glycine soja

text: miRNA

characteristic: sample type

text: roots of wild soybean

characteristic: strain

text: roots

characteristic: tissue

text: Al-free

characteristic: treatment


text: live

text: Generic

text: Glycine soja

characteristic: organism

text: miRNA

text: roots of wild soybean

text: roots

characteristic: title

text: Al-treated


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Glycine soja

text: targets

text: roots of wild soybean

text: roots

text: Al-free


characteristic: External Id

text: live

text: Generic

text: Glycine soja

text: targets

text: roots of wild soybean

text: roots

text: Al-treated


Spleen

text: University of Bergen

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Gadus morhua 'NEAC'

text: spleen

text: Gadus morhua spleen tissue transcriptome


Gonad

text: University of Bergen

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Gadus morhua 'NEAC'

text: gonad

text: Gadus morhua gonad tissue transcriptome


Hindgut

text: University of Bergen

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Gadus morhua 'NEAC'

text: hindgut

text: Gadus morhua hindgut tissue transcriptome


Liver

text: University of Bergen

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Gadus morhua 'NEAC'

text: liver

text: Gadus morhua liver tissue transcriptome


Headkidney and heart

text: University of Bergen

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: Gadus morhua 'NEAC'

text: headkidney

text: heart

text: Gadus morhua headkidney and heart tissue transcriptome


Brain

text: University of Bergen

text: live

text: Generic

text: Generic

text: Gadus morhua 'NEAC'

text: brain

text: Gadus morhua brain tissue transcriptome


Virus

text: University of Bergen

text: live

text: Generic

text: Gadus morhua

text: Gadus morhua virus infected egg transcriptome


Egg

text: University of Bergen

text: live

text: Generic

text: Gadus morhua

text: Gadus morhua egg transcriptome


NEAC

text: University of Bergen

text: live

text: Generic

text: Generic

text: Gadus morhua 'NEAC'

text: NEAC

text: Gadus morhua 'NEAC'


text: Wysocka lab, Chemical and Systems Biology, Stanford University

text: live

text: Generic

text: Neural crest cells (NCC)

characteristic: cell type

text: Anti-Histone H3 (acetyl K27) antibody

characteristic: chip antibody

characteristic: chip antibody vendor

text: Gallus gallus

text: stage 11-14 chicken embryos

characteristic: tissue source


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Neural crest cells (NCC)

text: Gallus gallus

text: stage 11-14 chicken embryos


text: live

text: Generic

text: Neural crest cells (NCC)

text: Anti-Histone H3 (acetyl K27) antibody

text: Gallus gallus

text: stage 20 chicken embryos


text: live

text: Generic

text: Neural crest cells (NCC)

text: Gallus gallus

text: stage 20 chicken embryos


text: University of Birmingham - Centre for Systems Biology

text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT0081


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT0113


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT0237


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT0802M


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT0954Q


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT1058S


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT1060N


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT2029


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT2073


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT2074


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT2105


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT2300


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT2371


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT3022


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT3050


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT3055


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT3060


text: live

text: Generic

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae SOT3074


reproductive tissues

text: UNIVERSITY OF SANTIAGO DE COMPOSTELA

text: live

text: Generic

text: A total of 30 turbot samples were collected from a turbot fish farm (Cluster of Aquaculture of Galicia) from a mixture of heterogeneous genetic families. In order to obtain the widest possible range of expressed transcript sub-sets, tissues were dissected in fish at different stages of gonad development. The number and biometry for each animal group were the following: undifferentiated animals (N=5, 90 days post hatch (dph), 5.9 * 0.6 cm, 2.9 * 0.9 g), differentiating animals (N=4, 150 dph , 9.8 * 1.3 cm, 21.8 * 9.5 g), male juveniles (N=4, 400 dph , 9.8 * 1.3 cm, 21.8 * 9.5 g), female juveniles (N=5, 450 dph , 23.4 * 3.6 cm, 264.1 * 93.4 g), male broodstocks (N=3, 900 dph , 45 * 3.6 cm, 2059 * 591 g) and female broodstocks (N=3, 900 dph , 47.7 *6.4 cm, 2835 * 1300 g). Brains and hypophysis from broodstock animals were also dissected and rapidly flash frozen in liquid nitrogen. Gonadal samples were completely isolated in juvenile fish, but differentiating fish gonads contained a bit of contamination by epithelium. The dissection of the gonads in undifferentiating animals contained other body structures

characteristic: description

text: Scophthalmus maximus

text: Reproductive tissue


text: live

text: Generic

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae SOT3088


text: University of Connectiuct

text: live

text: Generic

text: Aeromonas veronii

text: In vivo, crop microbiome

characteristic: protocol

text: Leech crop intraluminal fluid

characteristic: title


text: University of Connectiuct

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Aeromonas veronii

text: In vitro

text: midlog phase cells grown in LB medium


characteristic: External Id

text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

characteristic: extraction method

text: WT

characteristic: genotype

text: Mus musculus

text: ALP

text: Bone Marrow

characteristic: tissue

text: RNA-seq ALP [8485]


text: Instutute of Molecular Pathology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: ALP

text: Bone Marrow

text: RNA-seq ALP [8558]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: BLP

text: Bone Marrow

text: RNA-seq BLP [8486]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: BLP

text: Bone Marrow

text: RNA-seq BLP [8559]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: RNA-seq pro-B [8817]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: RNA-seq pro-B [8818]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: RNA-seq pro-B [8819]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: RNA-seq mature B [8276], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: RNA-seq mature B [8276], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: RNA-seq mature B [8159], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: RNA-seq mature B [8159], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: RNA-seq pro-B [8275], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: RNA-seq pro-B [8275], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: RNA-seq pro-B [8275], 3


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: RNA-seq pro-B [8275], 4


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: WT = Pax5(fl/fl)

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: RNA-seq pro-B [8403]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: WT = Pax5(fl/fl)

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: RNA-seq pro-B [8404]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Pax5(delta/delta) = Vav-Cre Pax5(fl/fl)

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: RNA-seq Pax5-deleted pro-B [8402]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Pax5(delta/delta) = Vav-Cre Pax5(fl/fl)

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: RNA-seq Pax5-deleted pro-B [8405]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Pax5(delta/delta) = Cd23-Cre Pax5(fl/fl)

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: RNA-seq Pax5-deleted mature B [8743]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Pax5(delta/-) = Cd23-Cre Pax5(fl/-)

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: RNA-seq Pax5-deleted mature B [8742],1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Pax5(delta/-) = Cd23-Cre Pax5(fl/-)

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: RNA-seq Pax5-deleted mature B [8742],2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Dynabeads M-280 Streptavidin (Invitrogen)

characteristic: antibody

text: 4-5 day culture

text: Pax5(Bio/Bio) Rag2(-/-)

text: Mus musculus

text: Pro-B

characteristic: strain

text: Bone Marrow

text: Pax5 Bio-ChIP-seq pro-B [8093], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 4-5 day culture

text: Pax5(Bio/Bio) Rag2(-/-)

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: Pax5 Bio-ChIP-seq pro-B [8093], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Pax5(Bio/Bio) Rag2(-/-)

text: Mus musculus

characteristic: organism

text: Pro-B

text: Bone Marrow

text: Pax5 Bio-ChIP-seq pro-B [8093], 3


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Pax5(Bio/Bio) Rag2(-/-)

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: Pax5 Bio-ChIP-seq pro-B [8417]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Mus musculus

text: Mature B

text: mix C57BL/6 and 129

text: Lymph Nodes

text: Pax5 Bio-ChIP-seq mature B [8097], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Mus musculus

text: Mature B

text: mix C57BL/6 and 129

text: Lymph Nodes

text: Pax5 Bio-ChIP-seq mature B [8097], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Mus musculus

text: Mature B

text: mix C57BL/6 and 129

text: Lymph Nodes

text: Pax5 Bio-ChIP-seq mature B [8097], 3


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Mus musculus

text: Mature B

text: mix C57BL/6 and 129

text: Lymph Nodes

text: Pax5 Bio-ChIP-seq mature B [8097], 4


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Mus musculus

text: Mature B

text: mix C57BL/6 and 129

text: Lymph Nodes

text: Pax5 Bio-ChIP-seq mature B [8097], 5


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Mus musculus

text: Mature B

text: mix C57BL/6 and 129

text: Lymph Nodes

text: Pax5 Bio-ChIP-seq mature B [8090], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Mus musculus

text: Mature B

text: mix C57BL/6 and 129

text: Lymph Nodes

text: Pax5 Bio-ChIP-seq mature B [8090], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: Control Bio-ChIP-seq mature B input [8095], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: Control Bio-ChIP-seq mature B input [8095], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K4me1 (Abcam ab8895)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K4me1 ChIP-seq pro-B [8666]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K4me2 Ab (Upstate 07-030, Lot# DAM1474881)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K4me2 ChIP-seq pro-B [8114], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K4me2 ChIP-seq pro-B [8114], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K4me2 ChIP-seq pro-B [8109], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K4me2 ChIP-seq pro-B [8109], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K4me3 Ab (Abcam ab8580-100)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K4me3 ChIP-seq pro-B [8115], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K4me3 Ab (Abcam ab8580-100)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K4me3 ChIP-seq pro-B [8115], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K4me3 Ab (Abcam ab8580-100)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K4me3 ChIP-seq pro-B [8110], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K4me3 Ab (Abcam ab8580-100)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K4me3 ChIP-seq pro-B [8110], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K9ac Ab (Upstate 07-352, LOT# DAM1394804)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K9ac ChIP-seq pro-B [8113], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K9ac ChIP-seq pro-B [8113], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K9ac ChIP-seq pro-B [8108], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K9ac ChIP-seq pro-B [8108], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K27me3 Ab (gift from T.Jenuwein)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K27me3 ChIP-seq pro-B [8111], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K27me3 Ab (gift from T.Jenuwein)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K27me3 ChIP-seq pro-B [8111], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K27me3 Ab (gift from T.Jenuwein)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K27me3 ChIP-seq pro-B [8111], 3


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K27me3 Ab (gift from T.Jenuwein)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K27me3 ChIP-seq pro-B [8116], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K27me3 Ab (gift from T.Jenuwein)

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: H3K27me3 ChIP-seq pro-B [8116], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K4me2 ChIP-seq mature B [8069], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K4me2 ChIP-seq mature B [8069], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K4me3 Ab (Abcam ab8580-100)

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K4me3 ChIP-seq mature B [8088], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K4me3 Ab (Abcam ab8580-100)

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K4me3 ChIP-seq mature B [8088], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K4me3 Ab (Abcam ab8580-100)

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K4me3 ChIP-seq mature B [8088], 3


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K4me3 Ab (Abcam ab8580-100)

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K4me3 ChIP-seq mature B [8070], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K4me3 Ab (Abcam ab8580-100)

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K4me3 ChIP-seq mature B [8070], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K9ac ChIP-seq mature B [8059], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K9ac ChIP-seq mature B [8059], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K9ac ChIP-seq mature B [8059], 3


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K9ac ChIP-seq mature B [8059], 4


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K9ac ChIP-seq mature B [8086]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K27me3 Ab (gift from T.Jenuwein)

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K27me3 ChIP-seq mature B [8080], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: H3K27me3 Ab (gift from T.Jenuwein)

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: H3K27me3 ChIP-seq mature B [8080], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: CAGE-seq pro-B [8300]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: WT

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: CAGE-seq mature B [8300]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: DHS-seq pro-B [8439], 1


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: DHS-seq pro-B [8439], 2


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 4-5 day culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: DHS-seq pro-B [8335]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 3-4 week culture

text: Pax5(-/-) Rag2(-/-)

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: DHS-seq Pax5-deleted pro-B [8953]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: 3-4 week culture

text: Mus musculus

text: Pro-B

text: Bone Marrow

text: DHS-seq Pax5-deleted pro-B [8438]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Tcrb E-beta(-/-)

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: DHS-seq mature B [8440]


text: Instutute of Molecular Pathology

text: live

text: Generic

text: Ex vivo

text: Tcrb E-beta(-/-)

text: Mus musculus

text: Mature B

text: Lymph Nodes

text: DHS-seq mature B [8630]


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1131_sR2052_2009


text: live

text: Generic

text: Rhinovirus B

text: Rhinovirus p1116_sR949_2009


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1194_sR844_2008


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1148_sR1494_2009


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1174_sR1231_2009


text: live

text: Generic

text: Rhinovirus B

text: Rhinovirus p1078_sR410_2007


text: live

text: Generic

text: Rhinovirus B

text: Rhinovirus p1044_sR122_2007


text: live

text: Generic

text: Rhinovirus B

text: Rhinovirus p1032_sR3159_2008


text: Wang Lab, Biochemistry and Molecular Genetics, University of Alabama at Birmingham

text: live

text: Generic

characteristic: cell line

text: colorectal carcinoma

characteristic: cell type

text: anti-uH2B (Millipore Cat# 05-1312)

characteristic: chip antibody

text: Homo sapiens

text: uH2B ChIP-Seq Control

text: uH2B ChIP-Seq Control


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: colorectal carcinoma

text: anti-uH2B (Millipore Cat# 05-1312)

text: Homo sapiens

text: uH2b ChIP-Seq USP49 knockdown

text: uH2b ChIP-Seq USP49 knockdown

characteristic: title


characteristic: External Id

text: live

text: Generic

text: colorectal carcinoma

text: anti-H2B (Abcam Cat# ab1790)

text: Homo sapiens

text: H2B ChIP-Seq Control

text: H2B ChIP-Seq Control


text: live

text: Generic

text: colorectal carcinoma

text: anti-H2B (Abcam Cat# ab1790)

text: Homo sapiens

text: H2B ChIP-Seq USP49 knockdown

text: H2B ChIP-Seq USP49 knockdown


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: nos-GAL4 driven UAS-dsRNA knockdown of white ovaries

characteristic: genotype/variaion

text: Drosophila melanogaster

text: Drosophila melanogaster ovary

text: ovaries

characteristic: tissue

text: nos-w


text: Hannon, Cold Spring Harbor Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: nos-GAL4 driven UAS-dsRNA knockdown of shu ovaries

text: Drosophila melanogaster

text: Drosophila melanogaster ovary

text: ovaries

text: nos-shu


text: Hannon, Cold Spring Harbor Laboratory

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: nos-GAL4 driven UAS-dsRNA knockdown of piwi ovaries

text: Drosophila melanogaster

text: Drosophila melanogaster ovary

text: ovaries

text: nos-piwi


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: tj-GAL4 driven UAS-dsRNA knockdown of white ovaries

text: Drosophila melanogaster

text: Drosophila melanogaster ovary

text: ovaries

text: tj-w


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: tj-GAL4 driven UAS-dsRNA knockdown of shu ovaries

text: Drosophila melanogaster

text: Drosophila melanogaster ovary

text: ovaries

text: tj-shu


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: tj-GAL4 driven UAS-dsRNA knockdown of piwi ovaries

text: Drosophila melanogaster

text: Drosophila melanogaster ovary

text: ovaries

text: tj-piwi


text: Hannon, Cold Spring Harbor Laboratory

text: live

text: Generic

text: Ovarian Somatic Sheet cells (OSS)

text: Drosophila melanogaster

text: Ovarian Somatic Sheet (OSS) cells

text: GFP dsRNA

characteristic: transfector


text: UPenn

text: live

text: Generic

characteristic: NCBI submission model

text: Whole genome sequencing of GM12004 to 60X coverage.

characteristic: description

text: Homo sapiens


text: UPenn

text: live

text: Generic

characteristic: NCBI submission package

text: Whole genome sequencing of GM12750 to 30X coverage.

text: Homo sapiens

characteristic: organism


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1194_sR843_2008


text: live

text: Generic

text: Rhinovirus C

text: Rhinovirus p1154_sR1124_2009


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1192_sR2968_2009


text: Ronald Evans, Gene Expression Lab, Salk Institute

text: live

text: Generic

characteristic: cell line

text: human hepatic stellate cells

characteristic: cell type

text: VDR

text: Santa Cruz

characteristic: chip antibody manufacturer

text: Homo sapiens

text: human LX2 cells

text: VDR-ChIP


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: human hepatic stellate cells

text: Homo sapiens

text: human LX2 cells

text: input


characteristic: External Id

text: live

text: Generic

text: human hepatic stellate cells

text: VDR

characteristic: chip antibody

text: Santa Cruz

text: Homo sapiens

text: human LX2 cells

text: VDR-ChIP + calcipotriol

characteristic: title

text: 100nM calcipotriol

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: human hepatic stellate cells

text: Abcam

text: Homo sapiens

text: human LX2 cells

text: SMAD3-ChIP + calcipotriol + TGFb

text: 100nM calcipotriol + 1ng/ml TGFb


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: human hepatic stellate cells

text: Abcam

text: Homo sapiens

text: human LX2 cells

text: SMAD3-ChIP + TGFb

text: 1ng/ml TGFb


text: live

text: Generic

characteristic: NCBI submission model

text: human hepatic stellate cells

text: VDR

text: Santa Cruz

text: Homo sapiens

text: human LX2 cells

text: VDR-ChIP + calcipotriol +TGFb

text: 100nM calcipotriol + 1ng/ml TGFb


text: live

text: Generic

text: human hepatic stellate cells

text: VDR

text: Santa Cruz

text: Homo sapiens

text: human LX2 cells

text: VDR-ChIP + TGFb

text: 1ng/ml TGFb


text: live

text: Generic

text: human hepatic stellate cells

text: Abcam

text: Homo sapiens

text: human LX2 cells

text: H3-ChIP + calcipotriol +TGFb

text: 100nM calcipotriol + 1ng/ml TGFb


text: live

text: Generic

text: human hepatic stellate cells

text: Abcam

text: Homo sapiens

text: human LX2 cells

text: H3-ChIP + calcipotriol

text: 100nM calcipotriol


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: GRU

text: No

characteristic: is tumor

text: CNV Genotypes

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Case Set

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from a human male participant in the dbGaP study International Standards for Cytogenomic Arrays


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission package

text: DNA

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

characteristic: organism

text: male

text: Case Set

text: International Standards for Cytogenomic Arrays

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

text: female

text: Case Set

text: Non-tumor DNA sample from a human female participant in the dbGaP study International Standards for Cytogenomic Arrays


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: GRU

text: No

text: CNV Genotypes

text: Homo sapiens

text: Case Set

text: Non-tumor DNA sample from a human participant in the dbGaP study International Standards for Cytogenomic Arrays


text: Nanjing Agricultural University

text: live

text: Generic

text: Early red Doyenne du Comice

characteristic: cultivar

text: cDNA-AFLP method

characteristic: description

text: Pyrus communis

text: fruit peel

characteristic: tissue-type

text: Pyrus communis cv. Early red Doyenne du Comice fruit peel cDNA library


text: Nanjing Agricultural University

text: live

text: Generic

text: Green Doyenne du Comice

text: cDNA-AFLP method

text: Pyrus communis

text: fruit peel

text: Pyrus communis cv. Green Doyenne du Comice fruit peel cDNA library


text: University of Hawaii at Manoa

text: live

text: Generic

text: Virus-like particles were concentrated from approximately 1.8 cubic meters of seawater from 3 m depth in Kaneohe Bay, Hawaii (Lat 21.43291 N, Lon 157.78625 W) on October 16, 2006 by filtration (0.2 Âµm) and tangential flow ultrafiltration (100 kDa) of the filtrate. Concentrated viruses were purified and fractionated by banding in a CsCl equilibrium buoyant density gradient. Viruses in one fraction from the gradient (1.444 g per ml) were further fractionated by ion-exchange chromatography. A single fraction from the ion-exchange column having only three detectable genome sizes was selected for sequencing. Viral DNA in the fraction was extracted, split into replicates, and DNA in each was amplified by multiple strand displacement amplification. DNA was physically sheared, size-selected and shotgun cloned into the Lucigen pSMART vector. Clones were sequenced with the SL1 (forward) and/or SR2 (reverse) priming sites on the plasmid by dye-terminator Sanger sequencing.

text: uncultured marine virus

text: Kaneohe Bay 3 m viral subfraction metagenome


FHV

text: TSRI

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Authentic virions and VLPs were purified using a series of sucrose gradients as is well established30 in 50 mM Hepes pH 7.0. Clarified cell lysates were spun at 40,000 RPM for 2.5 hours onto a 30 % sucrose cushion. The pellet was resuspended and then applied to a 10-40 % sucrose gradient and spun at 40,000 RPM for 1.5 hours. Fractions from the sucrose gradient were removed and analyzed by SDS-PAGE. Fractions containing only viral capsid proteins were pooled. This sample was then supplemented with 10 X DNase I reaction buffer (NEB) and 20 Units of DNase I (NEB) and 0.5 µg of RNase A (Roche) and incubated at room temperature for 2 hours to remove any non-encapsidated co-purified DNA or RNA. The samples were then extensively washed with 50 mM Hepes pH 7.0 on a 100 kDa MWCO centrifugal concentrator. This sample was then applied to the top of a second 10-40 % sucrose gradient and spun at 40,000 RPM for 1.5 hours. Again, fractions from the sucrose gradient were removed and analyzed by SDS-PAGE. Fractions containing only viral capsid proteins were pooled and extensively washed on a 100 kDa MWCO centrifugal concentrator. After this extensive purification, no cellular proteins could be detected by coomassie stain on an SDS-PAGE gel and no RNA or DNA could be detected on a native agarose gel when loading 3 µg of virus.

text: Flock House virus

text: Nucleotide-Resolution Profiling of RNA Recombination in the Encapsidated Genome of a Eukaryotic RNA Virus by Next-Generation Sequencing


VLP-RNAseq

characteristic: External Id

text: TSRI

text: live

text: Generic

text: Next-Generation Sequencing has been used in numerous investigations to characterize and quantify the genetic diversity of a virus sample through the mapping of polymorphisms and measurement of mutation frequencies. Next-Generation Sequencing has also been employed to identify recombination events occurring within the genomes of higher organisms, for example, detecting alternative RNA splicing events and oncogenic chromosomal rearrangements. Here, we combine these two approaches to profile RNA recombination within the encapsidated genome of a eukaryotic RNA virus, Flock House Virus. We detect hundreds of thousands of recombination events, with single-nucleotide resolution, which result in diversity in the encapsidated genome rivaling that due to mismatch mutation. We detect previously identified Defective-RNAs as well as many other abundant and novel Defective-RNAs. Our approach is exceptionally sensitive, unbiased, and requires no prior knowledge beyond the virus genome sequence. RNA recombination is a powerful driving force behind the evolution and adaptation of RNA viruses. The strategy implemented here is widely applicable and provides a highly detailed description of the complex mutational landscape of the transmissible viral genome.

text: Flock House virus


Nannochloropsis sp. C95

text: Nannochloropsis sp. C95

tag: Namespace:Qingdao University of Science an

text: Qingdao University of Science and Technology

text: live

text: Generic

characteristic: NCBI submission package

text: Nannochloropsis sp.

text: De novo sequencing transcriptome of Nannochloropsis sp. following N-starvation


text: Chinese National Human Genome Center at Shanghai

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: The adjacent non-tumorous tissue of HCC paitent P47


text: live

text: Generic

text: Homo sapiens

text: The primary tumor tissue of HCC patient P47

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: The adjacent non-tumorous tissue of HCC patient P48


characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: The primary tumor tissue of HCC patient P48


characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: The PVTT tissue of HCC patient P48


text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: The adjacent non-tumorous tissue of HCC patient P50


text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: The primary tumor of HCC patient P50


text: live

text: Generic

text: Homo sapiens

text: The PVTT tissue of HCC patient P50


text: Beijing Genome Institute

text: live

text: Generic

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Insect Sciences, Zhejiang University

text: live

text: Generic

text: Mediterranean (MED, commonly known as Q biotype)

characteristic: group

text: maintained on cotton plants

characteristic: growth protocol

text: no infection

characteristic: infection

text: Bemisia tabaci

text: Adults

text: control

characteristic: time

text: un-induced whiteflies


text: Insect Sciences, Zhejiang University

text: live

text: Generic

text: maintained on cotton plants

text: Beauveria bassiana

text: Bemisia tabaci

text: Adults

text: 48 hours

text: 48h fungal-induced whiteflies


text: Insect Sciences, Zhejiang University

text: live

text: Generic

text: maintained on cotton plants

text: Beauveria bassiana

text: Bemisia tabaci

text: Adults

text: 72 hours

text: 72h fungal-induced whiteflies


text: Zeitlinger Lab, Stowers Institute for Medical Research

text: live

text: Generic

text: w*

characteristic: genetic background

text: P{w+mW.hs=GawB}elavC155,P{w+mC=UAS-CD8::GFP.L}LL4, P{ry+t7.2=hsFLP}1, w*

characteristic: genotype

text: Drosophila melanogaster

text: 14h to17h AEL

characteristic: time point

text: muscle

characteristic: tissue

text: muscle FAC sorted from dissociated embryos MNase-seq


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: The adjacent non-tumorous tissue of HCC patient P51


text: van Aerle Lab, Biosciences, College of Life and Environmental Sciences, University of Exeter

text: live

text: Generic

characteristic: NCBI submission package

text: GCAT

characteristic: barcode

text: 24 hpf

characteristic: developmental stage

text: Danio rerio

characteristic: organism

text: wild-type WIK strain

characteristic: strain

text: whole embryos

characteristic: title

text: control

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: GCAG

text: 24 hpf

text: Danio rerio

text: wild-type WIK strain

text: whole embryos

text: silver nanoparticles (10nm; 5µg/L)


text: live

text: Generic

text: GCTC

text: 24 hpf

text: Danio rerio

text: wild-type WIK strain

text: whole embryos

text: silver bulk (0.6-1.6µm; 5 µg/L)


text: live

text: Generic

text: GCTA

text: 24 hpf

text: Danio rerio

text: wild-type WIK strain

text: whole embryos

text: silver ions (0.25 µg/L of silver nitrate)


text: live

text: Generic

text: GCTT

text: 48 hpf

text: Danio rerio

text: wild-type WIK strain

text: whole embryos

text: control


text: live

text: Generic

text: GCTG

text: 48 hpf

text: Danio rerio

text: wild-type WIK strain

text: whole embryos

text: silver nanoparticles (10nm; 5µg/L)


text: live

text: Generic

text: GCGC

text: 48 hpf

text: Danio rerio

text: wild-type WIK strain

text: whole embryos

text: silver bulk (0.6-1.6µm; 5 µg/L)


text: live

text: Generic

text: GCGA

text: 48 hpf

text: Danio rerio

text: wild-type WIK strain

text: whole embryos


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

characteristic: cell type

characteristic: chip antibody

text: Homo sapiens

text: B-cell lymphoma

text: 0 hr

characteristic: time


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

text: B-cell lymphoma

text: 1 hr


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

text: B-cell lymphoma

text: 24 hr


text: WT/CRUK Gurdon Institute, University of Cambridge

text: live

text: Generic

text: Homo sapiens

characteristic: sample id

text: dried blood spot

characteristic: sample type

text: genomic DNA from sample F1 dried blood spot (Bisulfite-Seq)


text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: dried blood spot

text: genomic DNA from sample F2 dried blood spot (Bisulfite-Seq)


text: live

text: Generic

text: Homo sapiens

text: M

text: dried blood spot

text: M

text: genomic DNA from sample M dried blood spot (Bisulfite-Seq)

characteristic: title


text: live

text: Generic

text: Homo sapiens

text: whole blood

characteristic: tissue

text: genomic DNA from sample F1 follow-up (Bisulfite-Seq)


characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: whole blood

text: genomic DNA from sample F2 follow-up (Bisulfite-Seq)


characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: M

text: M

text: whole blood

text: genomic DNA from sample M follow-up (Bisulfite-Seq)


name: 1132880543014 Sally gDNA, muscle Salmon_BFK_PE Sample

text: J. Craig Venter Institute

characteristic: INSDC last update

text: live

text: Generic

text: Sally muscle

characteristic: description

text: Salmo salar

text: Generic sample from Salmo salar


name: 1132880543012 Sally gDNA, muscle Salmon_BFK_PE Sample

text: J. Craig Venter Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Sally muscle

text: Salmo salar

text: Generic sample from Salmo salar


name: 1132886827015 Sally gDNA, muscle Salmon_BFK_PE Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Generic sample from Salmo salar


name: 1132880543034 Sally gDNA, muscle Salmon_BFK_PE Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Generic sample from Salmo salar


name: 1132880543036 Sally gDNA, muscle Salmon_BFK_PE Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Generic sample from Salmo salar


name: 1132877619070 Sally gDNA, muscle Salmon_BFK_PE Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Generic sample from Salmo salar


name: 1132876627053 Sally gDNA, muscle Salmon_BFK_PE Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Generic sample from Salmo salar


Sclerotinia homoeocarpa

text: University of Massachusetts

text: live

text: Generic

text: Paired end Illumina sequence reads. Total reads = 24,910,849.

text: Clarireedia homoeocarpa

text: Sclerotinia homoeocarpa isolate LT10 untreated


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Helicobacter pylori R018c

characteristic: strain

text: Helicobacter pylori R018c


text: live

text: Generic

text: Helicobacter pylori R030b

text: Helicobacter pylori R030b


text: live

text: Generic

text: Helicobacter pylori R036d

text: Helicobacter pylori R036d


text: live

text: Generic

text: Helicobacter pylori R037c

text: Helicobacter pylori R037c


text: live

text: Generic

text: Helicobacter pylori R038b

text: Helicobacter pylori R038b


text: live

text: Generic

text: Helicobacter pylori R046Wa

text: Helicobacter pylori R046Wa


text: live

text: Generic

text: Helicobacter pylori R055a

text: Helicobacter pylori R055a


text: live

text: Generic

text: Helicobacter pylori R056a

text: Helicobacter pylori R056a


text: live

text: Generic

text: Helicobacter pylori R32b

text: Helicobacter pylori R32b


text: Whitehead Institute

text: live

text: Generic

text: 12 weeks

characteristic: age

text: wild type

characteristic: genotype

text: Mus musculus

text: liver

text: WT


characteristic: External Id

text: Whitehead Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: 12 weeks

text: Adipoq-/-

text: Mus musculus

text: liver


text: Dept of Biology, HHMI/Brandeis University

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Adult (3-6months)

text: anti-CLK (Novus Biological; #NB100-126; lot B1)

characteristic: antibody

text: Mus musculus

text: Liver

characteristic: time

text: Liver


text: live

text: Generic

text: Adult (3-6months)

text: anti-BMAL1 (Abcam; #ab3350-200; lot 805009)

text: Mus musculus

characteristic: organism

text: Liver

text: Liver

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: Adult (3-6months)

text: none (input)

text: Mus musculus

text: Liver

text: Liver

characteristic: tissue


text: Shilatifard, Stowers Institute for Medical Research

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: mES

characteristic: cell type

text: A fragment of human ELL3 (aa 1-248) was expressed as His-tag fusion protein in pET-16b, purified on NTA-agarose according to Qiagen’s protocol and sent to Pocono Rabbit Farm and Labs for immunization into rabbits.

characteristic: chip antibody

text: Mus musculus

text: murine embryonic stem cells

text: C57BL/6 (female) x 129/S (male)

text: ChIP-seq of Ell3 in mES


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: mES

text: Mus musculus

text: murine embryonic stem cells

text: C57BL/6 (female) x 129/S (male)

characteristic: strain

text: ChIP-seq of WCE in mES


characteristic: External Id

text: live

text: Generic

text: mES

text: PolII

text: Santa Cruz

characteristic: chip antibody manufacturer

text: Mus musculus

text: murine embryonic stem cells

text: C57BL/6 (female) x 129/S (male)

text: ChIP-seq of Pol2 in mES after non-targeting shRNA

text: non-targeting shRNA

characteristic: treatment


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: mES

text: Mus musculus

text: murine embryonic stem cells

text: C57BL/6 (female) x 129/S (male)

text: ChIP-seq of WCE in mES after non-targeting shRNA

text: non-targeting shRNA


text: live

text: Generic

text: mES

text: PolII

text: Santa Cruz

text: Mus musculus

characteristic: organism

text: murine embryonic stem cells

text: C57BL/6 (female) x 129/S (male)

text: ChIP-seq of Pol2 in mES after Ell3 shRNA

text: Ell3 shRNA


text: live

text: Generic

text: mES

text: Mus musculus

text: murine embryonic stem cells

text: C57BL/6 (female) x 129/S (male)

text: ChIP-seq of WCE in mES after Ell3 shRNA

characteristic: title

text: Ell3 shRNA


characteristic: INSDC center name

text: live

text: Generic

text: mES

text: Mus musculus

text: murine embryonic stem cells

text: C57BL/6 (female) x 129/S (male)

text: RNA-seq of mES total RNA after non-targeting shRNA replicate 1

text: non-targeting shRNA


text: live

text: Generic

text: mES

text: Mus musculus

text: murine embryonic stem cells

text: C57BL/6 (female) x 129/S (male)

text: RNA-seq of mES total RNA after non-targeting shRNA replicate 2

text: non-targeting shRNA


text: live

text: Generic

text: mES

text: Mus musculus

text: murine embryonic stem cells

text: C57BL/6 (female) x 129/S (male)

text: RNA-seq of mES total RNA after Ell3 shRNA replicate 1

text: Ell3 shRNA


text: live

text: Generic

text: mES

text: Mus musculus

text: murine embryonic stem cells

text: C57BL/6 (female) x 129/S (male)

text: RNA-seq of mES total RNA after Ell3 shRNA replicate 2

text: Ell3 shRNA


text: live

text: Generic

text: murine EB at day 5

text: Mus musculus

text: murine embryoid bodies day 5

text: C57BL/6 (female) x 129/S (male)

text: RNA-seq of embryoid bodies at day 5 total RNA after non-targeting shRNA replicate 1

text: non-targeting shRNA


text: live

text: Generic

text: murine EB at day 5

text: Mus musculus

text: murine embryoid bodies day 5

text: C57BL/6 (female) x 129/S (male)

text: RNA-seq of embryoid bodies at day 5 total RNA after non-targeting shRNA replicate 2

text: non-targeting shRNA


text: Laboratory for Immunogenomics, RCAI, RIKEN

text: live

text: Generic

text: embryonic day 12.5

characteristic: age

characteristic: antibody

text: wild type

characteristic: genotype

text: Mus musculus

text: embryonic fibroblasts

text: Upstate/Millipore

characteristic: vendor


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: embryonic day 12.5

text: Phc2 L307R/L307R

text: Mus musculus

text: embryonic fibroblasts

text: Upstate/Millipore


text: The Salk Institute - Ecker Laboratory

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Arabidopsis thaliana


characteristic: External Id

text: National Institute of Allergy and Infectious Diseases

text: live

text: Generic

text: unidirectional library was constructed using long distance PCR (Smart cDNA kit) and Lambda TriplEx2 vector

characteristic: description

text: adult

characteristic: dev-stage

text: salivary glands

characteristic: organ

text: Nyssomyia intermedia

text: female

characteristic: sex

text: Lutzomyia intermedia adult female salivary gland library Lulointsg-1

text: phage

text: Lambda TriplEx2

characteristic: vector


Henichrhynchus siamensis gDNA project

text: Queensland Univeristy of Technology

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Henicorhynchus siamensis

characteristic: organism

text: Analysis of Expressed Sequence Tags and Microsatellite Development for a Siamese Mud Carp Henicorhynchus siamensis using 454 Pyrosequencing


Henicorhynchus lobatus gDNA project

text: Queensland Univeristy of Technology

characteristic: INSDC center name

text: live

text: Generic

text: Henicorhynchus lobatus

text: Analysis of Expressed Sequence Tags and Microsatellite Development for a Mud Carp Henicorhynchus lobatus using 454 Pyrosequencing

characteristic: title


text: Chinese National Human Genome Center at Shanghai

text: live

text: Generic

text: Homo sapiens

text: The primary tumor of HCC patient P51


text: live

text: Generic

text: Homo sapiens

text: The PVTT tissue of HCC patient P51


text: live

text: Generic

text: Homo sapiens

text: The adjacent non-tumorous tissue of HCC patient P53


text: live

text: Generic

text: Homo sapiens

text: The adjacent non-tumorous tissue of HCC patient P52


text: live

text: Generic

text: Homo sapiens

text: The primary tumor of HCC patient P52


text: live

text: Generic

text: Homo sapiens

text: The PVTT tissue of HCC patient P52


text: live

text: Generic

text: Homo sapiens

text: The primary tumor of HCC patinet P53


text: live

text: Generic

text: Homo sapiens

text: The PVTT tissue of HCC patient P53


text: live

text: Generic

text: Homo sapiens

text: The adjacent non-tumorous tissue of HCC patient P54


text: live

text: Generic

text: Homo sapiens

text: The primary tumor of HCC patient P54


text: live

text: Generic

text: Homo sapiens

text: The PVTT tissue of HCC patient P54


text: live

text: Generic

text: Homo sapiens

text: The adjacent non-tumorous tissue of HCC patient P55


text: live

text: Generic

text: Homo sapiens

text: The primary tumor of HCC patient P55


text: live

text: Generic

text: Homo sapiens

text: The PVTT tissue of HCC patient P55


text: live

text: Generic

text: Homo sapiens

text: The adjacent non-tumorous tissue of HCC patient P56


text: live

text: Generic

text: Homo sapiens

text: The primary tumor of HCC patient P56


text: live

text: Generic

text: Homo sapiens

text: The PVTT tissue of HCC patient P56


text: live

text: Generic

text: Homo sapiens

text: The adjacent non-tumorous tissue of HCC patient P929


text: live

text: Generic

text: Homo sapiens

text: The primary tumor of HCC patient P929


text: live

text: Generic

text: Homo sapiens

text: The PVTT tissue of HCC patient P929


N

text: CSIC

text: live

text: Generic

text: Polyaromatic hydrocarbon (PAH)-contaminated soil (N)

text: metagenomes

text: Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation


Nbs

text: CSIC

text: live

text: Generic

text: Polyaromatic hydrocarbon (PAH)-contaminated soil with bio-stimulation with calcium ammonia nitrate, NH4NO3 and KH2PO4 and the commercial surfactant Iveysol

text: metagenomes

text: polyaromatic hydrocarbon (PAH)-contaminated soil with (Nbs) or without (N) bio-stimulation with calcium ammonia nitrate, NH4NO3 and KH2PO4 and the commercial surfactant Iveysol


text: CSIC

text: live

text: Generic

text: Naphthalene enrichment from a polyaromatic hydrocarbon (PAH)-contaminated soil

text: metagenomes


text: CSIC

text: live

text: Generic

text: Naphthalene enrichment from a polyaromatic hydrocarbon (PAH)-contaminated soil with bio-stimulation with calcium ammonia nitrate, NH4NO3 and KH2PO4 and the commercial surfactant Iveysol*

text: metagenomes


text: Turnbaugh, Center for Systems Biology, Harvard University

text: live

text: Generic

characteristic: collection day

text: Individual A

characteristic: healthy adult

text: 4 hours

characteristic: incubation time

text: human gut metagenome

text: Fecal microbial community

text: digoxin

characteristic: treatment protocol of gut microbiome


characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: digitoxin


characteristic: External Id

text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: EtOH


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: gDNA


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: nizatidine


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: phenacetin


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: sulfasalazine


text: live

text: Generic

text: Individual A

text: human gut metagenome

text: Fecal microbial community

text: untreated (no incubation)


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: tetramisole


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: ampicillin


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: chloramphenicol


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: ciprofloxacin


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: doxycycline


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: erythromycin


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: kanamycin


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: norfloxacin


text: live

text: Generic

text: Individual A

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: tetracyclin


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: digoxin


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: digitoxin


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: EtOH


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: gDNA


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: nizatidine


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: phenacetin


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: sulfasalazine


text: live

text: Generic

text: Individual B

text: human gut metagenome

text: Fecal microbial community

text: untreated (no incubation)


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: tetramisole


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: ampicillin


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: chloramphenicol


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: ciprofloxacin


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: doxycycline


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: erythromycin


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: kanamycin


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: norfloxacin


text: live

text: Generic

text: Individual B

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: tetracyclin


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: digoxin


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: digitoxin


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: EtOH


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: gDNA


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: nizatidine


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: phenacetin


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: sulfasalazine


text: live

text: Generic

text: Individual C

text: human gut metagenome

text: Fecal microbial community

text: untreated (no incubation)


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: tetramisole


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: ampicillin


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: chloramphenicol


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: ciprofloxacin


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: doxycycline


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: erythromycin


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: kanamycin


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: norfloxacin


text: live

text: Generic

text: Individual C

text: 4 hours

text: human gut metagenome

text: Fecal microbial community

text: tetracyclin


text: Berlin Institute for Medical Systems Biology, Max-Delbrück-Center for Molecular Medicine

text: live

text: Generic

text: Homo sapiens

text: oligo(dT)

characteristic: purification

text: HEK293 cell culture

text: no treatment (mRNA)

characteristic: treatment


characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

text: oligo(dT)

text: HEK293 cell culture

text: 4SU+6SG labeling and no UV


text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: oligo(dT)

text: HEK293 cell culture

text: 4SU+6SG labeling and biotin-purified


text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: oligo(dT)

text: HEK293 cell culture

text: 4SU+6SG labeling and UV


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: none, input-DNA

characteristic: chip

text: Mus musculus

characteristic: organism

text: FACS-purified Pou5f1-GFP-positive germ cells

text: (CBA/CaJ X C57BL/6J)F16+ X Hsd:ICR(CD-1)

characteristic: strain

text: Embryonic day 13.5 male-gonad

characteristic: tissue

text: Replicate-1-e13.5PGC-input, 1


text: CMB-6, Genome Institute of Singapore

characteristic: INSDC center name

text: live

text: Generic

text: H3K4me3 (04-745, Millipore)

text: Mus musculus

text: Embryonic day 13.5 male-gonad

characteristic: title


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: none, input-DNA

text: Mus musculus

text: Embryonic day 13.5 male-gonad

text: Replicate-1-e13.5PGC-input, 2


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: H3K27me3 (07-449, Millipore)

text: Mus musculus

text: Embryonic day 13.5 male-gonad


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: H3K27ac (ab4729, Abcam)

text: Mus musculus

text: Embryonic day 13.5 male-gonad


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: H2BK20ac (ab52988, Abcam)

text: Mus musculus

text: Embryonic day 13.5 male-gonad


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: none, input-DNA

text: Mus musculus

text: Embryonic day 13.5 male-gonad

text: Replicate-2-e13.5PGC-input, 3


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: none, input-DNA

text: Mus musculus

text: Embryonic day 13.5 male-gonad


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: none, input-DNA

text: Mus musculus

text: Embryonic day 11.5 gonad

text: e11.5PGC-control, 1


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: H3K4me3 (04-745, Millipore)

text: Mus musculus

text: Embryonic day 11.5 gonad


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: none, input-DNA

text: Mus musculus

text: Embryonic day 11.5 gonad

text: e11.5PGC-control, 2


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: H3K27me3 (07-449, Millipore)

text: Mus musculus

text: Embryonic day 11.5 gonad


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: H3K27ac (ab4729, Abcam)

text: Mus musculus

text: Embryonic day 11.5 gonad


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: none, input-DNA

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: H3K4me3 (04-745, Millipore)

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell


text: CMB-6, Genome Institute of Singapore

text: live

text: Generic

text: none, input-DNA

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell

text: ES-nonWGA-input


text: Harvard University

text: live

text: Generic

text: mitotic

characteristic: cell cycle profile

characteristic: cell line

text: PSC custom made rabbit polyclonal antibody that was affinity purified (described in Francis et al., 2009. PMID: 19303136)

characteristic: chip antibody

characteristic: facs sorting antibody

text: Drosophila melanogaster

text: S2 cell line

text: PSC_mitotic_S2_ChIPSeq replicate 1


text: Harvard University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: mitotic

text: Drosophila melanogaster

text: S2 cell line

text: PSC_mitotic_S2_ChIPSeq replicate 2


characteristic: External Id

text: Harvard University

characteristic: INSDC secondary accession

text: live

text: Generic

text: asynchronous

text: Drosophila melanogaster

text: S2 cell line

text: PSC_control_S2_ChIPSeq replicate 1


text: Harvard University

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: asynchronous

text: Drosophila melanogaster

text: S2 cell line

text: PSC_control_S2_ChIPSeq replicate 2


text: Harvard University

text: live

text: Generic

text: mitotic

text: Drosophila melanogaster

characteristic: organism

text: S2 cell line

text: input_mitotic_S2 ChIPSeq replicate 1


text: Harvard University

text: live

text: Generic

text: mitotic

text: Drosophila melanogaster

text: S2 cell line

text: input_mitotic_S2 ChIPSeq replicate 2


text: Harvard University

text: live

text: Generic

text: asynchronous

text: Drosophila melanogaster

text: S2 cell line

text: input_control_S2 ChIPSeq replicate 1


text: Harvard University

text: live

text: Generic

text: asynchronous

text: Drosophila melanogaster

text: S2 cell line

text: input_control_S2 ChIPSeq replicate 2


text: Harvard University

text: live

text: Generic

text: mitotic

text: S2 experssing biotin-PH

text: none (streptavidin-coated beads used to pulldown biotinlyated PH)

text: Drosophila melanogaster

text: S2 cell line


text: Harvard University

text: live

text: Generic

text: asynchronous

text: S2 experssing biotin-PH

text: Drosophila melanogaster

text: S2 cell line


text: Harvard University

text: live

text: Generic

text: mitotic

text: S2 experssing biotin-PH

text: Drosophila melanogaster

text: S2 cell line


text: Harvard University

text: live

text: Generic

text: asynchronous

text: S2 experssing biotin-PH

text: Drosophila melanogaster

text: S2 cell line


text: Epigenetics section, MRC Clinical Sciences Centre

text: live

text: Generic

text: pre-B cell line B3

text: Brown et al. 1997

characteristic: cell line reference

text: Rabbit anti-C-terminal Ikaros

text: Mus musculus

text: ChIP-Seq data from Wildtype B3 Cells using Rabbit anti-C-terminal Ikaros antibody

text: endogenous Ikaros, rep1


text: live

text: Generic

text: pre-B cell line B3

text: Brown et al. 1997

text: Rabbit anti-C-terminal Ikaros

text: Mus musculus

text: endogenous Ikaros, rep2


text: live

text: Generic

text: pre-B cell line B3

text: Brown et al. 1997

text: Anti-haemagglutinin (HA) (Covance).

text: Mus musculus

text: ChIP-Seq data from HA-Ikaros transduced B3 cells using Anti-haemagglutinin (HA)

text: epitope-tagged HA-Ikaros, rep1


text: live

text: Generic

text: pre-B cell line B3

text: Brown et al. 1997

text: Anti-haemagglutinin (HA) (Covance).

text: Mus musculus

text: epitope-tagged HA-Ikaros, rep2


text: live

text: Generic

text: pre-B cell line B3

text: Brown et al. 1997

text: Mus musculus

text: Input data from Wildtype B3 Cells

text: input DNA, rep1


text: live

text: Generic

text: pre-B cell line B3

text: Brown et al. 1997

text: Mus musculus

text: Input data from Wildtype B3 Cells

text: input DNA, rep2


text: live

text: Generic

text: pre-B cell line B3

text: Brown et al. 1997

text: Mus musculus

text: Input data from HA-Ikaros transduced B3 cells

text: input DNA, rep3


text: University of Florida

text: live

text: Generic

text: Strains and growth condition X. citri subsp. citri, hrpX mutant strain is described in our previous study (Guo et al. 2011). Mutant strain was grown in nutrient broth (NB), on nutrient agar (NA), or in NYG medium (Daniels et al. 1984) at 28°C. Antibiotics were used at the following concentrations: rifamycin (Rif), 50 µg/ml and kanamycin (Kn), 50 µg/ml. RNA extraction Total RNA was extracted in triplicates from mutant strain, following the procedure described in our previous study (Guo et al. 2011). This sample (hrpx-1) is the first biological replicate. Briefly, well isolated clones from NA plates were grown in NB medium at 28ºC until mid-exponential phase. Cultures were harvested by centrifugation, and were inoculated into XVM2 medium after washing the pellet once with this medium. Cultures were harvested, when the optical density at 600 nm reached the value of 0.4 and mixed immediately with RNAprotect bacterial reagent from Qiagen (Qiagen, Valencia, CA, and U.S.A.). Total RNA was extracted from each replicate separately using RiboPure bacteria kit (Ambion, Austin, TX, USA), according to manufacturer's instructions(Guo et al. 2011). Genomic DNA contamination from extracted RNA samples was removed using TURBO DNA-free kit (Ambion) (Guo et al. 2011). Amount and the quality of the RNA samples was initially determined using NanoDrop™ 1000 spectrophotometer (NanoDrop Technologies, Inc., Wilmington, DE). Samples with absorbency at 260/280 and 260/230 nm ratios of greater than 2 were subjected to further processing (Guo et al. 2011). mRNA enrichment and sequencing Total RNA samples were enriched for mRNA by depleting rRNA using MICROBExpress kit from Ambion following the manufacturer’s instructions. mRNA enriched samples were checked for integrity using Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA) (Guo et al. 2011). RNA samples that passed the quality control were subjected to sequencing using the Illumina Genome Analyzer IIx (GAIIx) system, carried out at the Center for Genome Analysis at Yale University, following the standard protocol offered by Illumina. Real-time analysis and base calling were performed using the CASAVA v1.6 pipeline. The following raw sequence data is submitted at NCBI Sequence Read Archive with an accession number SRA052842 at the NCBI.

characteristic: description

text: Xanthomonas citri pv. citri

characteristic: strain

text: Xanthomonas citri subsp. citri Xac306 hrpX mutant 1


text: Sharrocks Lab, Faculty of Life Sciences, The University of Manchester

characteristic: INSDC center name

text: live

text: Generic

text: Osteosarcoma

characteristic: cell type

text: FOXM1 (C-20)

text: Santa Cruz

characteristic: chip antibody vendor

text: Homo sapiens

characteristic: passage

characteristic: title


characteristic: INSDC first public

text: live

text: Generic

characteristic: cell line

text: Osteosarcoma

text: Homo sapiens


text: University of Florida

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Strains and growth condition: X. citri subsp. citri, hrpX mutant strain is described in our previous study (Guo et al. 2011). Mutant strain was grown in nutrient broth (NB), on nutrient agar (NA), or in NYG medium (Daniels et al. 1984) at 28°C. Antibiotics were used at the following concentrations: rifamycin (Rif), 50 µg/ml and kanamycin (Kn), 50 µg/ml. RNA extraction: Total RNA was extracted in triplicates from mutant strain, following the procedure described in our previous study (Guo et al. 2011). This sample (mutant-2) is the second mutant biological replicate. Briefly, well isolated clones from NA plates were grown in NB medium at 28ºC until mid-exponential phase. Cultures were harvested by centrifugation, and were inoculated into XVM2 medium after washing the pellet once with this medium. Cultures were harvested, when the optical density at 600 nm reached the value of 0.4 and mixed immediately with RNAprotect bacterial reagent from Qiagen (Qiagen, Valencia, CA, and U.S.A.). Total RNA was extracted from each replicate separately using RiboPure bacteria kit (Ambion, Austin, TX, USA), according to manufacturer's instructions(Guo et al. 2011). Genomic DNA contamination from extracted RNA samples was removed using TURBO DNA-free kit (Ambion) (Guo et al. 2011). Amount and the quality of the RNA samples was initially determined using NanoDrop™ 1000 spectrophotometer (NanoDrop Technologies, Inc., Wilmington, DE). Samples with absorbency at 260/280 and 260/230 nm ratios of greater than 2 were subjected to further processing (Guo et al. 2011). mRNA enrichment and sequencing Total RNA samples were enriched for mRNA by depleting rRNA using MICROBExpress kit from Ambion following the manufacturer’s instructions. mRNA enriched samples were checked for integrity using Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA) (Guo et al. 2011). RNA samples that passed the quality control were subjected to sequencing using the Illumina Genome Analyzer IIx (GAIIx) system, carried out at the Center for Genome Analysis at Yale University, following the standard protocol offered by Illumina. Real-time analysis and base calling were performed using the CASAVA v1.6 pipeline. The following raw sequence data is submitted at NCBI Sequence Read Archive with an accession number SRA052842 at the NCBI.

text: Xanthomonas citri pv. citri

text: Xanthomonas citri subsp. citri Xac306 hrpX_mutant_2


characteristic: External Id

text: University of Florida

text: live

text: Generic

characteristic: NCBI submission model

text: Strains and growth condition: X. citri subsp. citri, hrpX mutant strain is described in our previous study (Guo et al. 2011). Mutant strain was grown in nutrient broth (NB), on nutrient agar (NA), or in NYG medium (Daniels et al. 1984) at 28°C. Antibiotics were used at the following concentrations: rifamycin (Rif), 50 µg/ml and kanamycin (Kn), 50 µg/ml. RNA extraction: Total RNA was extracted in triplicates from mutant strain, following the procedure described in our previous study (Guo et al. 2011). This sample (mutant-3) is the third mutant biological replicate. Briefly, well isolated clones from NA plates were grown in NB medium at 28ºC until mid-exponential phase. Cultures were harvested by centrifugation, and were inoculated into XVM2 medium after washing the pellet once with this medium. Cultures were harvested, when the optical density at 600 nm reached the value of 0.4 and mixed immediately with RNAprotect bacterial reagent from Qiagen (Qiagen, Valencia, CA, and U.S.A.). Total RNA was extracted from each replicate separately using RiboPure bacteria kit (Ambion, Austin, TX, USA), according to manufacturer's instructions(Guo et al. 2011). Genomic DNA contamination from extracted RNA samples was removed using TURBO DNA-free kit (Ambion) (Guo et al. 2011). Amount and the quality of the RNA samples was initially determined using NanoDrop™ 1000 spectrophotometer (NanoDrop Technologies, Inc., Wilmington, DE). Samples with absorbency at 260/280 and 260/230 nm ratios of greater than 2 were subjected to further processing (Guo et al. 2011). mRNA enrichment and sequencing Total RNA samples were enriched for mRNA by depleting rRNA using MICROBExpress kit from Ambion following the manufacturer’s instructions. mRNA enriched samples were checked for integrity using Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA) (Guo et al. 2011). RNA samples that passed the quality control were subjected to sequencing using the Illumina Genome Analyzer IIx (GAIIx) system, carried out at the Center for Genome Analysis at Yale University, following the standard protocol offered by Illumina. Real-time analysis and base calling were performed using the CASAVA v1.6 pipeline. The following raw sequence data is submitted at NCBI Sequence Read Archive with an accession number SRA052842 at the NCBI.

text: Xanthomonas citri pv. citri


text: University of Florida

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: Strains and growth condition X. citri subsp. citri, hrpX wild type strain is described in our previous study (Guo et al. 2011). Wild type strain was grown in nutrient broth (NB), on nutrient agar (NA), or in NYG medium (Daniels et al. 1984) at 28°C. Antibiotics were used at the following concentrations: rifamycin (Rif), 50 µg/ml and kanamycin (Kn), 50 µg/ml. RNA extraction Total RNA was extracted in triplicates from wild type strain, following the procedure described in our previous study (Guo et al. 2011). This sample (wild type-1) is the first wild type biological replicate. Briefly, well isolated clones from NA plates were grown in NB medium at 28ºC until mid-exponential phase. Cultures were harvested by centrifugation, and were inoculated into XVM2 medium after washing the pellet once with this medium. Cultures were harvested, when the optical density at 600 nm reached the value of 0.4 and mixed immediately with RNAprotect bacterial reagent from Qiagen (Qiagen, Valencia, CA, and U.S.A.). Total RNA was extracted from each replicate separately using RiboPure bacteria kit (Ambion, Austin, TX, USA), according to manufacturer's instructions(Guo et al. 2011). Genomic DNA contamination from extracted RNA samples was removed using TURBO DNA-free kit (Ambion) (Guo et al. 2011). Amount and the quality of the RNA samples was initially determined using NanoDrop™ 1000 spectrophotometer (NanoDrop Technologies, Inc., Wilmington, DE). Samples with absorbency at 260/280 and 260/230 nm ratios of greater than 2 were subjected to further processing (Guo et al. 2011). mRNA enrichment and sequencing Total RNA samples were enriched for mRNA by depleting rRNA using MICROBExpress kit from Ambion following the manufacturer’s instructions. mRNA enriched samples were checked for integrity using Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA) (Guo et al. 2011). RNA samples that passed the quality control were subjected to sequencing using the Illumina Genome Analyzer IIx (GAIIx) system, carried out at the Center for Genome Analysis at Yale University, following the standard protocol offered by Illumina. Real-time analysis and base calling were performed using the CASAVA v1.6 pipeline. The following raw sequence data is submitted at NCBI Sequence Read Archive with an accession number SRA052842 at the NCBI.

text: Xanthomonas citri pv. citri

text: Xanthomonas citri subsp. citri Xac306 WT_1


text: University of Florida

text: live

text: Generic

characteristic: SRA accession

text: Strains and growth condition: X. citri subsp. citri, hrpX wild type strain is described in our previous study (Guo et al. 2011). Wild type strain was grown in nutrient broth (NB), on nutrient agar (NA), or in NYG medium (Daniels et al. 1984) at 28°C. Antibiotics were used at the following concentrations: rifamycin (Rif), 50 µg/ml and kanamycin (Kn), 50 µg/ml. RNA extraction: Total RNA was extracted in triplicates from wild type strain, following the procedure described in our previous study (Guo et al. 2011). This sample (wild type-2) is the second wild type biological replicate. Briefly, well isolated clones from NA plates were grown in NB medium at 28ºC until mid-exponential phase. Cultures were harvested by centrifugation, and were inoculated into XVM2 medium after washing the pellet once with this medium. Cultures were harvested, when the optical density at 600 nm reached the value of 0.4 and mixed immediately with RNAprotect bacterial reagent from Qiagen (Qiagen, Valencia, CA, and U.S.A.). Total RNA was extracted from each replicate separately using RiboPure bacteria kit (Ambion, Austin, TX, USA), according to manufacturer's instructions(Guo et al. 2011). Genomic DNA contamination from extracted RNA samples was removed using TURBO DNA-free kit (Ambion) (Guo et al. 2011). Amount and the quality of the RNA samples was initially determined using NanoDrop™ 1000 spectrophotometer (NanoDrop Technologies, Inc., Wilmington, DE). Samples with absorbency at 260/280 and 260/230 nm ratios of greater than 2 were subjected to further processing (Guo et al. 2011). mRNA enrichment and sequencing Total RNA samples were enriched for mRNA by depleting rRNA using MICROBExpress kit from Ambion following the manufacturer’s instructions. mRNA enriched samples were checked for integrity using Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA) (Guo et al. 2011). RNA samples that passed the quality control were subjected to sequencing using the Illumina Genome Analyzer IIx (GAIIx) system, carried out at the Center for Genome Analysis at Yale University, following the standard protocol offered by Illumina. Real-time analysis and base calling were performed using the CASAVA v1.6 pipeline. The following raw sequence data is submitted at NCBI Sequence Read Archive with an accession number SRA052842 at the NCBI.

text: Xanthomonas citri pv. citri

characteristic: organism


thelygenic adults

text: Texas A&M University

text: live

text: Generic

text: Chrysomya rufifacies

text: thelygenic adults


text: University of Florida

text: live

text: Generic

text: Strains and growth condition: X. citri subsp. citri, hrpX wild type strain is described in our previous study (Guo et al. 2011). Wild type strain was grown in nutrient broth (NB), on nutrient agar (NA), or in NYG medium (Daniels et al. 1984) at 28°C. Antibiotics were used at the following concentrations: rifamycin (Rif), 50 µg/ml and kanamycin (Kn), 50 µg/ml. RNA extraction: Total RNA was extracted in triplicates from wild type strain, following the procedure described in our previous study (Guo et al. 2011). This sample (wild type-2) is the third wild type biological replicate. Briefly, well isolated clones from NA plates were grown in NB medium at 28ºC until mid-exponential phase. Cultures were harvested by centrifugation, and were inoculated into XVM2 medium after washing the pellet once with this medium. Cultures were harvested, when the optical density at 600 nm reached the value of 0.4 and mixed immediately with RNAprotect bacterial reagent from Qiagen (Qiagen, Valencia, CA, and U.S.A.). Total RNA was extracted from each replicate separately using RiboPure bacteria kit (Ambion, Austin, TX, USA), according to manufacturer's instructions(Guo et al. 2011). Genomic DNA contamination from extracted RNA samples was removed using TURBO DNA-free kit (Ambion) (Guo et al. 2011). Amount and the quality of the RNA samples was initially determined using NanoDrop™ 1000 spectrophotometer (NanoDrop Technologies, Inc., Wilmington, DE). Samples with absorbency at 260/280 and 260/230 nm ratios of greater than 2 were subjected to further processing (Guo et al. 2011). mRNA enrichment and sequencing: Total RNA samples were enriched for mRNA by depleting rRNA using MICROBExpress kit from Ambion following the manufacturer’s instructions. mRNA enriched samples were checked for integrity using Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA) (Guo et al. 2011). RNA samples that passed the quality control were subjected to sequencing using the Illumina Genome Analyzer IIx (GAIIx) system, carried out at the Center for Genome Analysis at Yale University, following the standard protocol offered by Illumina. Real-time analysis and base calling were performed using the CASAVA v1.6 pipeline. The following raw sequence data is submitted at NCBI Sequence Read Archive with an accession number SRA052842 at the NCBI.

characteristic: description

text: Xanthomonas citri pv. citri

text: Xanthomonas citri subsp. citri Xac306 WT_3


dogTemporalmicrobiota

text: Medical Biofilm Research Institute

text: live

text: Generic

text: Temporal variations of the intestinal microbiota have been investigated in humans, but limited information is available for other animal species. The study aim was to evaluate the abundance and short-term temporal variability of fecal microbiota in dogs. Two fecal samples were collected (15 days apart) from six healthy dogs. The microbiota was evaluated using fluorescent in situ hybridization (FISH) and 454-pyrosequencing targeting the 16S rRNA and its gene. Pyrosequencing revealed 15 families comprising &gt;80% of all microbiota, with intra-individual coefficients of variation (%CV) ranging from 2 to 141% (median: 55%). In contrast, the inter-individual %CV ranged from 62% (Ruminococcaceae) to 230% (Lactobacillaceae) (median: 145%). Relative proportions of Faecalibacterium and Subdoligranulum were low (two dogs harbored 4-7% of Subdoligranulum, the remaining dogs had &lt;1% of sequences of either genus). Conversely, FISH revealed that Faecalibacterium comprised a median of 5% of total counts (range: 0-8%, probe Fprau645). A novel FISH probe (Faecali 698) was tested that, compared to Fprau645, can detect in silico a similar percentage of Faecalibacterium but higher proportions of Subdoligranulum. This probe revealed a high percentage of Faecalibacterium-Subdoligranulum (median: 16% of DAPI counts). The results should be considered when evaluating changes on the canine intestinal microbiota.

text: Bacteria

text: Abundance and short-term temporal variability of fecal microbiota in healthy dogs


Mixed regeneration mRNA

text: British Antarctic Survey

text: live

text: Generic

text: Ophionotus victoriae

text: mRNA from mixed regeneration arms of Ophionotus victoriae


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: 50.000 N 145.000 W

text: Generic

text: Microbial community structure in the oxygen minimum zone of the Northeast subarctic Pacific Ocean

characteristic: id

text: marine metagenome

text: ACACGacgggcggtgtgtRc

characteristic: primer

text: Generic sample from marine metagenome


characteristic: INSDC center name

text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: ACACGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.283 N 134.667 W

text: Generic

text: marine metagenome

text: ACACGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: ACGTCacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: ACGTCacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.283 N 134.667 W

text: Generic

text: marine metagenome

text: ACGTCacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: AGCACacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: AGCACacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.567 N 138.667 W

text: Generic

text: marine metagenome

text: AGCACacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: AGTGTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: AGTGTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: AGTGTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.283 N 134.667 W

text: Generic

text: marine metagenome

text: AGTGTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.567 N 138.667 W

text: Generic

text: marine metagenome

text: ATATGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: ATATGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: ATATGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.283 N 134.667 W

text: Generic

text: marine metagenome

text: ATATGACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 49.567 N 138.667 W

text: Generic

text: marine metagenome

text: ATGCTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: ATGCTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.283 N 134.667 W

text: Generic

text: marine metagenome

text: ATGCTACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: CACAGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: CACAGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.567 N 138.667 W

text: Generic

text: marine metagenome

text: CACAGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: CACAGACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: CAGCTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: CAGTGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: CATATacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: CATGCacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.567 N 138.667 W

text: Generic

text: marine metagenome

text: CATGCacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: CATGCacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.283 N 134.667 W

text: Generic

text: marine metagenome

text: CATGCACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: CGATGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: CGATGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.567 N 138.667 W

text: Generic

text: marine metagenome

text: CGATGACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.817 N 128.667 W

text: Generic

text: marine metagenome

text: CGCGTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.817 N 128.667 W

text: Generic

text: marine metagenome

text: CGCTCacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.567 N 138.667 W

text: Generic

text: marine metagenome

text: CGCTCacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: CGTACacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: CTACTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: CTCATacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: CTCATacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: CTCGCacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: CTCGCACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: CTCTGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: CTGCGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: CTGCGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: CTGTCacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: TACGTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: TACGTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: TACTCACGGGCGGTGTGTRC

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: TACTCacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: TAGAGacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: TATACacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: TATCTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.97 N 130.667 W

text: Generic

text: marine metagenome

text: TATCTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: TATCTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 50.000 N 145.000 W

text: Generic

text: marine metagenome

text: TCAGTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 49.567 N 138.667 W

text: Generic

text: marine metagenome

text: TCAGTacgggcggtgtgtRc

text: Generic sample from marine metagenome


text: live

text: 48.65 N 126.667 W

text: Generic

text: marine metagenome

text: TCAGTACGGGCGGTGTGTRC

text: Generic sample from marine metagenome