characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

text: cancer

characteristic: cell karyotype

text: endoderm

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate


status: PUBLIC

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: CTCF

tag: attribute

text: Rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Lonza

text: NHDF-neo

text: neonatal dermal fibroblasts

characteristic: cell description

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: UW

characteristic: lab

text: Stamatoyannopoulous - University of Washington

characteristic: lab description

characteristic: labexpid

text: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

text: Homo sapiens

text: NHDF-neo

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: Millipore

text: ScienCell

characteristic: biomaterial provider

text: HCM

characteristic: cell

text: cardiac myocytes

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: UW

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HCM


characteristic: External Id

characteristic: GEO Accession

text: Gene Expression Omnibus

characteristic: INSDC center name

text: live

text: Generic

text: source: hyphal and blastospore cell mixture

characteristic: description

text: blastospores and hyphae

characteristic: morphology

text: Candida albicans

characteristic: strain

text: GSM1023541: C. albicans mix

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: blastospores and hyphae

text: Candida dubliniensis

text: GSM1023542: C. dubliniensis mix

text: type material of Candida dubliniensis

characteristic: type material


text: Gene Expression Omnibus

text: live

text: Generic

text: source: hyphal cells

text: hyphae

text: Candida albicans

characteristic: organism

text: GSM1023543: C. albicans_YPS-1


text: Gene Expression Omnibus

text: live

text: Generic

text: source: hyphal cells

text: hyphae

text: Candida albicans

text: GSM1023544: C. albicans_YPS-2


text: Gene Expression Omnibus

text: live

text: Generic

text: source: blastospore cells

text: blastospores

text: Candida dubliniensis

text: GSM1023545: C. dubliniensis_YPS-1

text: type material of Candida dubliniensis


text: Gene Expression Omnibus

text: live

text: Generic

text: source: blastospore cells

text: blastospores

text: Candida dubliniensis

text: GSM1023546: C. dubliniensis_YPS-2

text: type material of Candida dubliniensis


text: Gene Expression Omnibus

text: live

text: Generic

text: source: hyphal cells

text: hyphae

text: Candida dubliniensis

text: GSM1023547: C. dubliniensis_WS-1

text: type material of Candida dubliniensis


text: Gene Expression Omnibus

text: live

text: Generic

text: source: hyphal cells

text: hyphae

text: Candida dubliniensis

text: GSM1023548: C. dubliniensis_WS-2

text: type material of Candida dubliniensis


text: Slotkin Laboratory, Molecular Genetics, The Ohio State University

text: live

text: Generic

characteristic: background strain

text: 18 hour light, 23C

characteristic: growth conditions

text: Arabidopsis thaliana

text: Inflorescence tissue

text: unopened flower buds

characteristic: tissue

text: wt Col total small RNA


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: 18 hour light, 23C

text: Arabidopsis thaliana

text: Inflorescence tissue

text: unopened flower buds

text: ddm1-2 F6 generation mutant total small RNA


text: live

text: Generic

text: 18 hour light, 23C

text: Arabidopsis thaliana

text: Inflorescence tissue

text: unopened flower buds

text: ddm1/rdr6 double mutant total small RNA


text: live

text: Generic

text: 18 hour light, 23C

text: Arabidopsis thaliana

text: Inflorescence tissue

text: unopened flower buds

text: rdr6-15 mutant total small RNA


text: TSRI

text: live

text: Generic

text: 4- to 8-wk-old

characteristic: age

text: Anti-CTCF Antibody

characteristic: chip antibody

text: Millipore

characteristic: chip antibody vendor

text: Rag -/-

characteristic: genotype/variation

text: Mus musculus

text: Rag1 -/- CD4-CD8- (DN) thymocytes

text: CD4-CD8- (DN) thymocytes

text: CTCF_DN ChIP_seq


text: TSRI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: 4- to 8-wk-old

text: Rag -/-

text: Mus musculus

text: Rag1 -/- CD4-CD8- (DN) thymocytes

characteristic: strain

text: CD4-CD8- (DN) thymocytes

text: DN input control

characteristic: title


text: Rockefeller University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: non-lesional

characteristic: group

text: Homo sapiens

text: Patient 1

characteristic: patient

text: skin


text: Rockefeller University

text: live

text: Generic

characteristic: SRA accession

text: non-lesional

text: Homo sapiens

characteristic: organism

text: Patient 2

text: skin

characteristic: tissue


characteristic: External Id

text: Rockefeller University

characteristic: INSDC center name

text: live

text: Generic

text: non-lesional

text: Homo sapiens

text: Patient 3

text: skin


text: Rockefeller University

text: live

text: Generic

text: lesional

text: Homo sapiens

text: Patient 1

text: skin


text: Rockefeller University

text: live

text: Generic

text: lesional

text: Homo sapiens

text: Patient 2

text: skin


text: Rockefeller University

text: live

text: Generic

text: lesional

text: Homo sapiens

text: Patient 3

text: skin


text: TSRI

text: live

text: Generic

text: 5- to 8-wk-old

characteristic: age

text: Anti-CTCF Antibody

characteristic: chip antibody

text: Millipore

characteristic: chip antibody vendor

text: Rag1 -/-

text: Mus musculus

text: Rag1 -/- pro-B cells

text: pro-B cells


text: TSRI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: 5- to 8-wk-old

text: Rag1 -/-

characteristic: genotype/variation

text: Mus musculus

text: Rag1 -/- pro-B cells

text: pro-B cells

text: pro-B input control


text: TSRI

characteristic: INSDC secondary accession

text: live

text: Generic

text: 4- to 8-wk-old

text: Anti-CTCF Antibody

text: Millipore

text: Rag1 -/- with TCRbeta transgene

text: Mus musculus

text: Rag1 -/- with TCRb transgene, thymocytes

characteristic: strain

text: CD4+CD8+ (DP) thymocytes

text: CTCF_DP ChIP_seq

characteristic: title


text: TSRI

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 4- to 8-wk-old

text: Rag1 -/- with TCRbeta transgene

text: Mus musculus

text: CD4+CD8+ (DP) thymocytes

text: DP input control


text: Molecular, Cell and Developmental Biology, University of California, Los Angeles

text: live

text: Generic

characteristic: SRA accession

text: Williams 82

characteristic: cultivar

text: mid-maturation

characteristic: developmental stage

text: Glycine max

text: Soybean mid-maturation-stage embryonic axis part

text: embryonic axis

text: Mid-maturation-stage embryonic axis


Kf SL cDNA

characteristic: External Id

text: University of British Columbia

text: live

text: Generic

text: Kryptoperidinium foliaceum CCMP 1326 is a dinoflagellate with a diatom endosymbiont. The splice leader cDNA is originated from the dinoflagellate host since the diatom endosymbiont lacks the splice leader on its mRNAs.

characteristic: description

text: Kryptoperidinium foliaceum

characteristic: organism

text: Kryptoperidinium foliaceum SL cDNA


text: Job Dekker Lab, Program in Gene Function and Expression, University of Massachusetts Medical School

characteristic: INSDC center name

text: live

text: Generic

characteristic: cell line

text: fibroblasts

characteristic: cell type

text: normal

characteristic: disease status

text: male

characteristic: gender

text: Homo sapiens

characteristic: passage

text: normal forearm skin biopsy, Hi-C

text: forearm skin biopsy

characteristic: tissue

text: Hi-C Normal Father Fibroblasts p18


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: fibroblasts

text: normal

text: female

text: Homo sapiens

text: normal skin biopsy, Hi-C

text: skin biopsy

text: Hi-C Normal Age-Control Fibroblasts p20

characteristic: title


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: fibroblasts

text: Hutchinson-Gilford progeria syndrome

text: male

text: Homo sapiens

text: patient forearm skin biopsy, Hi-C

text: forearm skin biopsy

text: Hi-C Progeria (HGPS) Fibroblasts p17


characteristic: External Id

text: live

text: Generic

text: fibroblasts

text: Hutchinson-Gilford progeria syndrome

text: male

text: Homo sapiens

text: patient forearm skin biopsy, Hi-C

text: forearm skin biopsy

text: Hi-C Progeria (HGPS) Fibroblasts p19


text: live

text: Generic

characteristic: antibody catalog number

text: Abcam

characteristic: antibody vendor

text: fibroblasts

text: mouse anti-H3K27me3

characteristic: chip antibody

text: normal

text: male

text: Homo sapiens

characteristic: organism

text: normal forearm skin biopsy, H3K27me3 ChIP

text: forearm skin biopsy

text: H3K27me3 ChIP, Father, p14


characteristic: INSDC center name

text: live

text: Generic

characteristic: cell line

text: fibroblasts

characteristic: cell type

text: normal

characteristic: disease status

text: male

text: Homo sapiens

text: normal forearm skin biopsy, input

text: forearm skin biopsy

text: H3K27me3 ChIP, Father, p14, INPUT


characteristic: INSDC first public

text: live

text: Generic

text: Abcam

text: fibroblasts

text: mouse anti-H3K27me3

text: normal

text: male

characteristic: gender

text: Homo sapiens

characteristic: passage

text: forearm skin biopsy

characteristic: tissue

text: H3K27me3 ChIP, Father, p19


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: fibroblasts

text: normal

text: male

text: Homo sapiens

text: normal forearm skin biopsy, input

text: forearm skin biopsy

text: H3K27me3 ChIP, Father, p19, INPUT

characteristic: title


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Abcam

text: fibroblasts

text: mouse anti-H3K27me3

text: normal

text: female

text: Homo sapiens

text: normal skin biopsy, H3K27me3 ChIP

text: skin biopsy

text: H3K27me3 ChIP, Age Control, p17


text: live

text: Generic

text: fibroblasts

text: normal

text: female

text: Homo sapiens

characteristic: organism

text: normal skin biopsy, input

text: skin biopsy

text: H3K27me3 ChIP, Age Control, p17, INPUT


characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody catalog number

text: Abcam

characteristic: antibody vendor

text: fibroblasts

text: mouse anti-H3K27me3

characteristic: chip antibody

text: Hutchinson-Gilford progeria syndrome

text: male

text: Homo sapiens

text: patient forearm skin biopsy, H3K27me3 ChIP

text: forearm skin biopsy

text: H3K27me3 ChIP, HGPS, p14


characteristic: INSDC first public

text: live

text: Generic

characteristic: cell line

text: fibroblasts

characteristic: cell type

text: Hutchinson-Gilford progeria syndrome

characteristic: disease status

text: male

text: Homo sapiens

text: patient forearm skin biopsy, input

text: forearm skin biopsy

text: H3K27me3 ChIP, HGPS, p14, INPUT


characteristic: INSDC last update

text: live

text: Generic

text: Abcam

text: fibroblasts

text: mouse anti-H3K27me3

text: Hutchinson-Gilford progeria syndrome

text: male

characteristic: gender

text: Homo sapiens

characteristic: passage

text: forearm skin biopsy

characteristic: tissue

text: H3K27me3 ChIP, HGPS, p17


characteristic: External Id

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: fibroblasts

text: Hutchinson-Gilford progeria syndrome

text: male

text: Homo sapiens

text: patient forearm skin biopsy, input

text: forearm skin biopsy

text: H3K27me3 ChIP, HGPS, p17, INPUT

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Millipore

text: fibroblasts

text: mouse anti-lamin A/C

text: normal

text: male

text: Homo sapiens

characteristic: organism

text: normal forearm skin biopsy, lamin ChIP

text: forearm skin biopsy

text: LaminA ChIP, Father, p16, rep1


characteristic: INSDC center name

text: live

text: Generic

text: fibroblasts

text: normal

text: male

text: Homo sapiens

text: normal forearm skin biopsy, input

text: forearm skin biopsy

text: LaminA ChIP, Father, p16, INPUT, rep1


characteristic: INSDC first public

text: live

text: Generic

characteristic: antibody catalog number

text: Santa Cruz

characteristic: antibody vendor

text: fibroblasts

text: goat anti-lamin A/C N18

characteristic: chip antibody

text: normal

text: male

text: Homo sapiens

text: normal forearm skin biopsy, lamin ChIP

text: forearm skin biopsy

text: LaminA ChIP, Father, p16, rep2


characteristic: INSDC last update

text: live

text: Generic

characteristic: cell line

text: fibroblasts

characteristic: cell type

text: normal

characteristic: disease status

text: male

text: Homo sapiens

text: normal forearm skin biopsy, input

text: forearm skin biopsy

text: LaminA ChIP, Father, p16, INPUT, rep2


characteristic: External Id

text: live

text: Generic

text: Millipore

text: fibroblasts

text: mouse anti-lamin A/C

text: Hutchinson-Gilford progeria syndrome

text: male

characteristic: gender

text: Homo sapiens

characteristic: passage

text: patient forearm skin biopsy, lamin ChIP

text: forearm skin biopsy

characteristic: tissue

text: LaminA ChIP, HGPS, p16, rep1


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: fibroblasts

text: Hutchinson-Gilford progeria syndrome

text: male

text: Homo sapiens

text: patient forearm skin biopsy, input

text: forearm skin biopsy

text: LaminA ChIP, HGPS, p16, INPUT, rep1

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Santa Cruz

text: fibroblasts

text: goat anti-lamin A/C N18

text: Hutchinson-Gilford progeria syndrome

text: male

text: Homo sapiens

characteristic: organism

text: patient forearm skin biopsy, lamin ChIP

text: forearm skin biopsy

text: LaminA ChIP, HGPS, p16, rep2


characteristic: INSDC first public

text: live

text: Generic

text: fibroblasts

text: Hutchinson-Gilford progeria syndrome

text: male

text: Homo sapiens

text: patient forearm skin biopsy, input

text: forearm skin biopsy

text: LaminA ChIP, HGPS, p16, INPUT, rep2


text: National Institute of Allergy and Infectious Diseases

characteristic: INSDC last update

text: live

text: Generic

text: A female specimem of Desmodos rotundus was collected with nets, near the city of Botucatu, at Sao Paulo State, Brazil. The principal and accessory glands were identified based on the anatomical studies by DiSanto (Disanto, 1960). After a ventral incision, the glands were removed, carefully cleaned from surrounding tissues, cut in 2 pieces and immediately placed in RNA later (Ambion). After 2 days at 4oC, the glands were removed and placed in a petri dish. Then, a scalp was used to remove 2 pieces from the right anterior principal gland - one from the central part (named 7C - not used for library construction) and one from the periphery (7L) of the gland. Two other pieces from the right posterior principal gland - one from the central part (8M) and one from the peripheral part (8L) of the gland were also taken. On piece was obtained from the center of the right (AC) accessory gland. mRNA was isolated essentially as described using a Micro-FastTrack 2.0 mRNA Isolation Kit (Invitrogen, CA)(Francischetti et al., 2005). The mRNA content was estimated by Pico RNA assay (Perkin Elmer): 7L, 55.95 ng/ml; 7C, 17.18 ng/ml; 8L, 24.35 ng/ml; 8M, 29.96 ng/ml and AC, 28.57 ng/ml.

characteristic: description

text: Desmodus rotundus

text: Desmodus rotundus salivary accessory gland


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: human gut metagenome

characteristic: sample name

text: Generic sample from unclassified Bacteria (miscellaneous)


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: female

characteristic: host sex

text: human gut metagenome

text: Generic sample from unclassified sequences


text: Broad Institute

text: live

text: Generic

text: Generic

text: male

text: human gut metagenome


text: University of Washington

text: live

text: Generic

text: Erythranthe cardinalis

text: Mimulus cardinalis CE10 Genome Sequences


text: Broad Institute

text: live

text: Generic

text: Generic

text: human gut metagenome


text: Broad Institute

text: live

text: Generic

text: human gut metagenome


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

text: AutismGenomeProject

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: DS-ASD

text: CNV Genotypes

characteristic: molecular data type

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

characteristic: sex

text: Family/Twin/Trios

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: AutismGenomeProject

characteristic: submitter handle

text: DNA sample from Blood of a human male participant in the dbGaP study Autism Genome Project (AGP) Consortium - GWAS - Stage I and II


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: AutismGenomeProject

text: Cell Line

text: DS-ASD

text: CNV Genotypes

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: male

text: Family/Twin/Trios

text: AutismGenomeProject

text: DNA sample from Cell Line of a human male participant in the dbGaP study Autism Genome Project (AGP) Consortium - GWAS - Stage I and II

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

text: AutismGenomeProject

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

text: DS-ASD

text: CNV Genotypes

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Family/Twin/Trios

text: Autism Genome Project (AGP) Consortium - GWAS - Stage I and II

text: AutismGenomeProject


text: dbGaP

text: live

text: Generic

text: DNA

text: AutismGenomeProject

text: Blood

characteristic: body site

text: DS-ASD

text: CNV Genotypes

characteristic: molecular data type

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

characteristic: sex

text: Family/Twin/Trios

characteristic: study design

text: AutismGenomeProject

text: DNA sample from Blood of a human female participant in the dbGaP study Autism Genome Project (AGP) Consortium - GWAS - Stage I and II


text: dbGaP

text: live

text: Generic

text: DNA

text: AutismGenomeProject

text: Cell Line

text: DS-ASD

text: CNV Genotypes

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Family/Twin/Trios

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: AutismGenomeProject

characteristic: submitter handle


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: AutismGenomeProject

text: Cell Line

text: DS-ASD

text: CNV Genotypes

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Family/Twin/Trios

text: AutismGenomeProject

text: DNA sample from Cell Line of a human female participant in the dbGaP study Autism Genome Project (AGP) Consortium - GWAS - Stage I and II


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: AutismGenomeProject

text: DS-ASD

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: female

text: Family/Twin/Trios

text: AutismGenomeProject

text: DNA sample from Unknown of a human female participant in the dbGaP study Autism Genome Project (AGP) Consortium - GWAS - Stage I and II

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

text: AutismGenomeProject

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: DS-ASD

text: CNV Genotypes

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Family/Twin/Trios

text: AutismGenomeProject


text: dbGaP

text: live

text: Generic

text: DNA

text: AutismGenomeProject

text: DS-ASD

text: CNV Genotypes

characteristic: molecular data type

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

characteristic: sex

text: Family/Twin/Trios

characteristic: study design

text: AutismGenomeProject

text: DNA sample from Unknown of a human male participant in the dbGaP study Autism Genome Project (AGP) Consortium - GWAS - Stage I and II


text: Low varied flow

characteristic: Conditioning hydraulics

text: Before

characteristic: Flushingevent

text: The University of Sheffield

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Water

characteristic: material

text: aquatic metagenome

text: Generic sample from Bacteria


text: Steady state

text: Before

text: The University of Sheffield

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Water

text: aquatic metagenome

text: Generic sample from Bacteria


text: Highly varied flow

text: Before

text: The University of Sheffield

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Water

text: aquatic metagenome

characteristic: organism

text: Generic sample from Bacteria

characteristic: title


text: Low varied flow

characteristic: External Id

text: End

text: The University of Sheffield

text: live

text: Generic

text: Water

text: aquatic metagenome

text: Generic sample from Bacteria


text: Steady state

text: End

text: The University of Sheffield

text: live

text: Generic

text: Water

text: aquatic metagenome

text: Generic sample from Bacteria


text: Highly varied flow

text: End

text: The University of Sheffield

text: live

text: Generic

text: Water

text: aquatic metagenome

text: Generic sample from Bacteria


text: Low varied flow

text: End

text: The University of Sheffield

text: live

text: Generic

text: Biofilm

text: aquatic metagenome

text: Generic sample from Bacteria


text: Steady state

text: End

text: The University of Sheffield

text: live

text: Generic

text: Biofilm

text: aquatic metagenome

text: Generic sample from Bacteria


text: Highly varied flow

text: End

text: The University of Sheffield

text: live

text: Generic

text: Biofilm

text: aquatic metagenome

text: Generic sample from Bacteria


text: Low varied flow

text: Before

text: The University of Sheffield

text: live

text: Generic

text: Biofilm

text: aquatic metagenome

text: Generic sample from Bacteria


text: Steady state

text: Before

text: The University of Sheffield

text: live

text: Generic

text: Biofilm

text: aquatic metagenome

text: Generic sample from Bacteria


text: Highly varied flow

text: Before

text: The University of Sheffield

text: live

text: Generic

text: Biofilm

text: aquatic metagenome

text: Generic sample from Bacteria


Uromyces appendiculatus haustorial cDNA

text: Universitaet Hohenheim

text: live

text: Generic

text: cDNA from Uromyces appendiculatus prepared by affinity chromatography

characteristic: description

characteristic: isolate

text: Uromyces appendiculatus SWBR1

text: Uromyces appendiculatus haustorial cDNA


Phakopsora pachyrhizi haustorial cDNA

text: Universitaet Hohenheim

text: live

text: Generic

text: cDNA from Phakopsora pachyrhizi prepared by affinity chromatography

text: Phakopsora pachyrhizi Thai1

text: Phakopsora pachyrhizi haustorial cDNA


text: Genome Research Foundation

text: live

text: Generic

text: a tissue sample of a diffuse type gastric cancer Korean patient.

text: Homo sapiens


text: Genome Research Foundation

text: live

text: Generic

text: a blood sample of a intestinal type gastric cancer Korean patient

text: Homo sapiens


Mac_01 testis tissue

text: Johannes Gutenberg University Mainz

text: live

text: Generic

text: Macaca mulatta

text: Mac_01 testis tissue


text: Zhiyong Wang lab, Department of Plant Biology, Carnegie Institution for Science

text: live

text: Generic

characteristic: ecotype

text: Wild type

characteristic: genotype/variation

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Seedling

characteristic: tissue

text: Col 1


characteristic: INSDC secondary accession

text: live

text: Generic

text: Wild type

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Seedling

text: Col 2


text: live

text: Generic

characteristic: SRA accession

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Seedling

text: IBH1-Ox 1


text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Seedling

text: IBH1-Ox 2


text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Seedling

text: PRE1-Ox/IBH1-Ox 1


text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Seedling

text: PRE1-Ox/IBH1-Ox 2


text: Universidad de Salamanca / CSIC, Instituto de Biología Funcional y Genómica (IBFG)

text: live

text: Generic

text: Synchronous meiosis

characteristic: culture type

text: Schizosaccharomyces pombe

text: Mononucleosomal DNA

text: h-/h- pat1.114/pat1.114 leu1.32/leu1.32 ade6M210/ade6M216

characteristic: strain

text: 0 hours

characteristic: time


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Synchronous meiosis

text: Schizosaccharomyces pombe

text: Mononucleosomal DNA

text: 3 hours


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Synchronous meiosis

text: Schizosaccharomyces pombe

text: Mononucleosomal DNA

text: 5 hours


characteristic: External Id

text: live

text: Generic

text: Asynchronous mitosis

text: Schizosaccharomyces pombe

characteristic: organism

text: Mononucleosomal DNA

text: 972 h-

characteristic: title


text: live

text: Generic

text: Asynchronous mitosis

text: Schizosaccharomyces pombe

text: Mononucleosomal DNA


text: Ecker lab, PBIO, Salk-Institute

text: live

text: Generic

text: 3 weeks

characteristic: age

text: LD

characteristic: ecotype

text: Parental LD

characteristic: genotype

text: Glycine max

text: Trifoliolate leaves from three-week-old plants

text: Trifoliolate leaves

text: LD-MethylC-Seq

text: 190 mmol PAR m-2s-1, 23C, 60% R.H., and 16 h photoperiod

characteristic: treatment


text: Ecker lab, PBIO, Salk-Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: 3 weeks

text: LDX

text: Parental LDX

text: Glycine max

text: Trifoliolate leaves

characteristic: tissue

text: LDX-MethylC-Seq


text: Ecker lab, PBIO, Salk-Institute

text: live

text: Generic

text: 3 weeks

text: Glycine max

text: Trifoliolate leaves


text: Ecker lab, PBIO, Salk-Institute

text: live

text: Generic

text: 3 weeks

text: LD

text: Parental LD

text: Glycine max

text: Trifoliolate leaves


text: Ecker lab, PBIO, Salk-Institute

text: live

text: Generic

text: 3 weeks

text: LDX

text: Parental LDX

text: Glycine max

text: Trifoliolate leaves


name: Bacteria and Archaea in wastewater treatment system

text: Oak Ridge National Laboratory

text: live

text: Generic

text: The project characterized an experimental onsite wastewater treatment technology for removing SCR-derived ammonium, nitrite and nitrate from wastewater has been developed by the Tennessee Valley Authority (TVA). The efficiency of the ATOXIC/ASSET treatment system for biological removal of ammonium, nitrite, nitrate, and heavy metals from fossil power plant effluent was evaluated. Changes in microbial communities through the treatment system were analyzed using bacterial and archaeal 16S rRNA gene 454 pyrosequencing technology.

characteristic: description

text: aquatic metagenome

text: Microbial Communities Involved in Biological Ammonium Removal from Coal Combustion Wastewaters


La Estrella Agriculture

text: INDEAR

characteristic: INSDC center name

text: live

text: Generic

text: Sampling in La Estrella farm located in Rolling Pampas, Argentina (-34* 43', -60* 4* 45) was performed in June 2010. Rolling Pampas Soils are classified as Typical Argiudolls and mean annual precipitation and temperature are 1002 mm and 16.8 *C. Sampling was performed on bulk soils from agricultural plots. Soils were under agricultural management for the last 30 years and managed by No Till farming the last 16 years using a Wheat-Soybean/Corn rotation. The last crop rotation before sampling was wheat-soybean and samples were taken a month after soybean harvest. Soil cores were taken with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 in each plot. Cores were then pooled together. Soil samples were stored at -80*C until processing. Total DNA was obtained using PowerSoil DNA isolation kit from MoBio.

text: soil metagenome

text: Argentina Rolling Pampas Soil: La Estrella Agriculture (No Till)


La Estrella Non Agriculture

text: INDEAR

characteristic: INSDC first public

text: live

text: Generic

text: Sampling in La Estrella farm located in Rolling Pampas, Argentina (-34* 43', -60* 4* 45) was performed in June 2010. Rolling Pampas Soils are classified as Typical Argiudolls and mean annual precipitation and temperature are 1002 mm and 16.8 *C. Sampling was performed on bulk soils from non-agricultural plots. Non-agricultural samples were obtained from grassland areas covered with herbaceous (non-woody) plants common in the region such as Cirsium sp, Trifolium sp, Micropsis sp, Festuca sp, Dichondra sp, Cyperus sp and Taraxacum officinale among others grasses, nearby the farmhouses. Soil cores were taken with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 in each plot. Cores were then pooled together. Soil samples were stored at -80*C until processing. Total DNA was obtained using PowerSoil DNA isolation kit from MoBio.

text: soil metagenome

text: Argentina Rolling Pampas Soil: La Estrella Non Agriculture


text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Female

characteristic: host sex

text: Anopheles quadriannulatus

characteristic: sample name

text: Generic sample from Anopheles quadriannulatus


characteristic: External Id

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: Anopheles albimanus

text: Generic sample from Anopheles albimanus


text: Broad Institute

text: live

text: Generic

text: Generic

text: Female

text: Anopheles stephensi

characteristic: organism

text: Generic sample from Anopheles stephensi

characteristic: title


text: Broad Institute

text: live

text: Generic

text: Generic

text: Female

text: Anopheles arabiensis

text: Generic sample from Anopheles arabiensis


text: Broad Institute

text: live

text: Generic

text: Generic

text: Anopheles melas

text: Luba, Bioko Island, Equatorial Guinea

characteristic: strain

text: Generic sample from Anopheles melas


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Anopheles merus

text: Generic sample from Anopheles merus


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Anopheles stephensi

text: Generic sample from Anopheles stephensi


text: Broad Institute

text: live

text: Generic

characteristic: collaborator sample id

text: Anopheles farauti

text: RNA

characteristic: sample type

text: Other

characteristic: sex

text: Anopheles farauti RNA sample STEP5RNA


text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Butyricicoccus pullicaecorum 1.2

text: Butyricicoccus pullicaecorum 1.20

text: Generic sample from Butyricicoccus pullicaecorum 1.2


name: 385307.9178.Genomic DNA.Atopobium minutum 10063974

text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Atopobium minutum 10063974

text: Atopobium minutum 10063974

text: Genomic DNA

text: Other

text: Atopobium minutum 10063974 Genomic DNA sample Atopobium minutum 10063974


text: Broad Institute

text: live

text: Clostridium hathewayi

characteristic: Isolate, name or label

text: Generic

text: Generic

text: Hungatella hathewayi 12489931

text: Clostridium hathewayi 12489931

characteristic: sample name

text: Homo sapiens

characteristic: specific host

text: Generic sample from Clostridium hathewayi 12489931


name: 385308.9178.Genomic DNA.Clostridium colicanis 209318

characteristic: External Id

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Generic

text: Clostridium colicanis 209318

text: Clostridium colicanis 209318

text: Genomic DNA

text: Other

text: Clostridium colicanis 209318 Genomic DNA sample Clostridium colicanis 209318


PRJNA28331.Clostridium butyricum 60E.3

text: Broad Institute

text: live

text: Clostridium butyricum

text: Generic

characteristic: NCBI submission package

text: Generic

text: Clostridium butyricum 60E.3

characteristic: organism

text: Clostridium butyricum 60E.3

text: Homo sapiens

text: Generic sample from Clostridium butyricum 60E.3

characteristic: title


PRJNA28331.Aeromonas veronii AMC24

text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Aeromonas veronii AMC24

text: Aeromonas veronii AMC24

characteristic: strain

text: Generic sample from Aeromonas veronii AMC24


text: Broad Institute

text: live

text: Generic

text: Generic

text: Lactobacillus iners ACS-070-V-Col3

text: Lactobacillus iners ACS-070-V-COL3

text: Generic sample from Lactobacillus iners ACS-070-V-Col3


name: PRJNA28331.Treponema socranskii subsp. paredis ATCC 35535

text: Broad Institute

text: live

text: Generic

text: Generic

text: ATCC 35535

text: Generic sample from Treponema socranskii subsp. paredis ATCC 35535


name: PRJNA28331.Treponema maltophilum ATCC 51939

text: Broad Institute

text: live

text: Generic

text: Generic

text: Treponema maltophilum ATCC 51939

text: Treponema maltophilum ATCC 51939

text: ATCC 51939

text: Generic sample from Treponema maltophilum ATCC 51939


PRJNA28331.Treponema medium ATCC 700293

text: Broad Institute

text: live

text: Generic

text: Generic

text: Treponema medium ATCC 700293

text: Treponema medium ATCC 700293

text: ATCC 700293

text: Generic sample from Treponema medium ATCC 700293


PRJNA28331.Treponema parvum ATCC 700770

text: Broad Institute

text: live

text: Generic

text: Generic

text: Treponema parvum ATCC 700770

text: Treponema parvum ATCC 700770

text: ATCC 700770

text: Generic sample from Treponema parvum ATCC 700770


name: PRJNA28331.Delftia acidovorans CCUG 15835

text: Broad Institute

text: live

text: Generic

text: Generic

text: Delftia acidovorans CCUG 15835

text: Delftia acidovorans CCUG 15835

text: CCUG 15835

text: Generic sample from Delftia acidovorans CCUG 15835


name: PRJNA28331.Delftia acidovorans CCUG 274B

text: Broad Institute

text: live

text: Generic

text: Generic

text: Delftia acidovorans CCUG 274B

text: Delftia acidovorans CCUG 274B

text: CCUG 274B

text: Generic sample from Delftia acidovorans CCUG 274B


name: PRJNA28331.Bacteroides massiliensis DSM 17679

text: Broad Institute

text: live

text: Generic

text: Generic

text: Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223

text: Bacteroides massiliensis DSM 17679

text: DSM 17679

text: Generic sample from Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223

text: type strain of Bacteroides massiliensis

characteristic: type material


name: PRJNA28331.Bacteroides salyersiae DSM 18765

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Bacteroides salyersiae DSM 18765

text: DSM 18765

text: Generic sample from Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988


name: PRJNA28331.Parabacteroides goldsteinii DSM 19448

text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Parabacteroides goldsteinii DSM 19448 = WAL 12034

text: Parabacteroides goldsteinii DSM 19448

text: DSM 19448

text: Generic sample from Parabacteroides goldsteinii WAL 12034


name: PRJNA28331.Parabacteroides gordonii DSM 23371

text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Parabacteroides gordonii MS-1 = DSM 23371

text: Parabacteroides gordonii DSM 23371

text: DSM 23371

text: Generic sample from Parabacteroides gordonii MS-1


name: PRJNA28331.Prevotella sp. oral taxon 475 F0059

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Prevotella sp. oral taxon 475 F0059

text: Generic sample from Prevotella sp. oral taxon 475 str. F0059


PRJNA28331.Treponema vincentii F0403

text: Broad Institute

text: live

text: Generic

text: Generic

text: Treponema vincentii F0403

text: Treponema vincentii F0403

text: Generic sample from Treponema vincentii F0403


text: Broad Institute

text: live

text: Generic

text: Generic

text: Sutterella wadsworthensis HGA0223

text: Sutterella wadsworthensis HGA0223

text: Generic sample from Sutterella wadsworthensis HGA0223


PRJNA28331.Dermabacter sp. HFH0086

text: Broad Institute

text: live

text: Generic

text: Generic

text: Dermabacter sp. HFH0086

text: Dermabacter sp. HFH0086

text: Generic sample from Dermabacter sp. HFH0086


PRJNA28331.Veillonella sp. HPA0037

text: Broad Institute

text: live

text: Generic

text: Generic

text: Veillonella sp. HPA0037

text: Veillonella sp. HPA0037

text: Generic sample from Veillonella sp. HPA0037


PRJNA28331.Acidaminococcus sp. HPA0509

text: Broad Institute

text: live

text: Generic

text: Generic

text: Acidaminococcus sp. HPA0509

text: Acidaminococcus sp. HPA0509

text: Generic sample from Acidaminococcus sp. HPA0509


PRJNA28331.Actinomyces sp. HPA0247

text: Broad Institute

text: live

text: Generic

text: Generic

text: Actinomyces sp. HPA0247

text: Actinomyces sp. HPA0247

text: Generic sample from Actinomyces sp. HPA0247


PRJNA28331.Enterococcus sp. HPB0033

text: Broad Institute

text: live

text: Generic

text: Generic

text: Enterococcus sp. HPB0033

text: Enterococcus sp. HPB0033

text: Generic sample from Enterococcus sp. HPB0033


PRJNA28331.Pseudomonas sp. HPB0071

text: Broad Institute

text: live

text: Generic

text: Generic

text: Pseudomonas sp. HPB0071

text: Pseudomonas sp. HPB0071

text: Generic sample from Pseudomonas sp. HPB0071


PRJNA28331.Streptococcus sp. HPH0090

text: Broad Institute

text: live

text: Generic

text: Generic

text: Streptococcus sp. HPH0090

text: Streptococcus sp. HPH0090

text: Generic sample from Streptococcus sp. HPH0090


PRJNA28331.Streptomyces sp. HPH0547

text: Broad Institute

text: live

text: Generic

text: Generic

text: Streptomyces sp. HPH0547

text: Streptomyces sp. HPH0547

text: Generic sample from Streptomyces sp. HPH0547


PRJNA28331.Pseudomonas species P179

text: Broad Institute

text: live

text: Generic

text: Generic

text: Pseudomonas sp. P179

text: Pseudomonas species P179

text: Generic sample from Pseudomonas sp. P179


text: Broad Institute

text: live

text: Generic

text: Generic

text: Mycobacterium tuberculosis W-148

text: Mycobacterium tuberculosis W-148

text: Generic sample from Mycobacterium tuberculosis W-148


text: Broad Institute

text: live

text: Generic

text: Generic

text: Pseudomonas aeruginosa str. Stone 130

text: Pseudomonas aeruginosa Stone130

text: Stone 130

text: Generic sample from Pseudomonas aeruginosa str. Stone 130


name: PRJNA167166.Plasmodium falciparum HFGR-2 1-60x

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum Dd2

text: Plasmodium falciparum HFGR-2 1-60x

text: Generic sample from Plasmodium falciparum Dd2


name: PRJNA167166.Plasmodium falciparum HFGR-3 1-200x

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum Dd2

text: Plasmodium falciparum HFGR-3 1-200x


text: Department of Molecular Genetics of Cell, Institute of Molecular Genetics

text: live

text: Generic

text: wK

characteristic: background strain

text: Drosophila melanogaster

text: ovaries

text: ovaries

characteristic: tissue

text: Small RNAs from ovaries of 1.9 strain

characteristic: transgenic line


characteristic: External Id

text: live

text: Generic

text: wK

text: Drosophila melanogaster

text: ovaries

text: ovaries

text: Small RNAs from ovaries of 2.1 strain


text: live

characteristic: INSDC status

text: Generic

text: wK

text: Drosophila melanogaster

text: ovaries

text: ovaries

text: Small RNAs from ovaries of 2.3 strain


text: live

text: Generic

characteristic: NCBI submission model

text: wK

text: Drosophila melanogaster

text: ovaries

text: ovaries

text: Small RNAs from ovaries of 2.6 strain


text: live

text: Generic

characteristic: NCBI submission package

text: wK

text: Drosophila melanogaster

text: ovaries

text: ovaries

text: Small RNAs from ovaries of 2.10 strain


text: live

text: Generic

text: wK

text: Drosophila melanogaster

characteristic: organism

text: ovaries

text: ovaries

text: Small RNAs from ovaries of 3.1 strain


text: live

text: Generic

text: wK

text: Drosophila melanogaster

text: ovaries

text: ovaries

text: Small RNAs from ovaries of 3.6 strain

characteristic: title


characteristic: INSDC secondary accession

text: live

text: Generic

text: wK

text: Drosophila melanogaster

text: ovaries

text: ovaries

text: Small RNAs from ovaries of 3.9 strain


text: live

text: Generic

characteristic: SRA accession

text: wK

text: Drosophila melanogaster

text: ovaries

text: ovaries

text: Small RNAs from ovaries of 3.10 strain


text: live

text: Generic

text: wK

text: Drosophila melanogaster

text: ovaries

text: ovaries

text: Small RNAs from ovaries of 62.5.2 strain


text: live

text: Generic

text: wK

text: Drosophila melanogaster

text: ovaries

text: ovaries

text: Small RNAs from ovaries of 67.2.1 strain


text: live

text: Generic

text: wK

text: Drosophila melanogaster

text: ovaries

text: ovaries

text: Small RNAs from ovaries of wK strain

text: none, wildtype


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: collaborator sample id

text: Tetrahymena thermophila SB210

text: RNA

characteristic: sample type

text: Other

characteristic: sex

text: Tetrahymena thermophila RNA sample Tetrahymena_thermophila_MIC


RpoH ChIP-seq

text: Wadsworth Center

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Escherichia coli str. K-12 substr. MG1655

characteristic: strain

characteristic: substrain

text: General Sample for Esherichia coli K-12


La Negrita Agriculture

text: INDEAR

characteristic: INSDC last update

text: live

text: Generic

text: Sampling in La Negrita farm located in Rolling Pampas, Argentina (-34* 34* 46,2, -59* 55* 8,4) was performed in June 2010. Rolling Pampas Soils are classified as Typical Argiudolls and mean annual precipitation and temperature are 1002 mm and 16.8 *C. Sampling was performed on bulk soils from agricultural plots. Soils were under agricultural management for the last 30 years and managed by No Till farming the last 16 years using a Wheat-Soybean/Corn rotation. The last crop rotation before sampling was wheat-soybean and samples were taken a month after soybean harvest. Soil cores were taken with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 in each plot. Cores were then pooled together. Soil samples were stored at -80*C until processing. Total DNA was obtained using PowerSoil DNA isolation kit from MoBio.

characteristic: description

text: soil metagenome

text: Argentina Rolling Pampas Soil: La Negrita Agriculture (No Till)


La Negrita Non Agriculture

characteristic: External Id

text: INDEAR

text: live

text: Generic

text: Sampling in La Negrita farm located in Rolling Pampas, Argentina (-34* 34* 46,2, -59* 55* 8,4) was performed in June 2010. Rolling Pampas Soils are classified as Typical Argiudolls and mean annual precipitation and temperature are 1002 mm and 16.8 *C. Sampling was performed on bulk soils from non-agricultural plots. Non-agricultural samples were obtained from grassland areas covered with herbaceous (non-woody) plants common in the region such as Cirsium sp, Trifolium sp, Micropsis sp, Festuca sp, Dichondra sp, Cyperus sp and Taraxacum officinale among others grasses, nearby the farmhouses. Soil cores were taken with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 in each plot. Cores were then pooled together. Soil samples were stored at -80*C until processing. Total DNA was obtained using PowerSoil DNA isolation kit from MoBio.

text: soil metagenome

text: Argentina Rolling Pampas Soil: La Negrita Non Agriculture


Criadero Klein Agriculture

text: INDEAR

text: live

characteristic: INSDC status

text: Generic

text: Sampling in Criadero Klein farm located in Rolling Pampas, Argentina (-35* 7*17,4 , -60* 15* 42,6) was performed in June 2010. Rolling Pampas Soils are classified as Typical Argiudolls and mean annual precipitation and temperature are 1002 mm and 16.8 *C. Sampling was performed on bulk soils from agricultural plots. Soils were under agricultural management for the last 30 years and managed by No Till farming the last 16 years using a Wheat-Soybean/Corn rotation. The last crop rotation before sampling was wheat-soybean and samples were taken a month after soybean harvest. Soil cores were taken with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 in each plot. Cores were then pooled together. Soil samples were stored at -80*C until processing. Total DNA was obtained using PowerSoil DNA isolation kit from MoBio.

text: soil metagenome

text: Argentina Rolling Pampas Soil: Criadero Klein Agriculture (No Till)


Criadero Klein Non Agriculture

text: INDEAR

text: live

text: Generic

characteristic: NCBI submission model

text: Sampling in Criadero Klein farm located in Rolling Pampas, Argentina (-35* 7*17,4 , -60* 15* 42,6) was performed in June 2010. Rolling Pampas Soils are classified as Typical Argiudolls and mean annual precipitation and temperature are 1002 mm and 16.8 *C. Sampling was performed on bulk soils from non-agricultural plots. Non-agricultural samples were obtained from grassland areas covered with herbaceous (non-woody) plants common in the region such as Cirsium sp, Trifolium sp, Micropsis sp, Festuca sp, Dichondra sp, Cyperus sp and Taraxacum officinale among others grasses, nearby the farmhouses. Soil cores were taken with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 in each plot. Cores were then pooled together. Soil samples were stored at -80*C until processing. Total DNA was obtained using PowerSoil DNA isolation kit from MoBio.

text: soil metagenome

text: Argentina Rolling Pampas Soil: Criadero Klein Non Agriculture


Balcarce Agriculture (No Till)

text: INDEAR

text: live

text: Generic

characteristic: NCBI submission package

text: Balcarce sampling location was a 34-year crop rotation experiment located in the Southern Pampas (-37º45´09´´, -58º17´47´´). Soils in Balcarce are classified as a complex of TypicalArgiudolls and Petrocalcic/Paleudols and mean annual precipitation and temperatures are 875 mm and 13.8 ºC. The experiment was carried out as a randomized complete block design with a split-plot treatment arrangement, three replicates, and 10 by 35 m experimental units. Treatments assigned to main plots were referred to as no-till or conventional tillage (undermould board plough). This SRA sample corresponds to No Till samples only. Rotations have included pastures and grain crops during the last 16 years. Last rotation before sampling was corn-soybean. Samples were collected on August 2010 from all treatments and replicates, a month after soybean harvest. Soil cores were taken with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 in each plot. Cores were then pooled together.Composite samples were immediately sent to the lab where they were air dried and sieved through 1 mm mesh to thoroughly homogenize, break aggregates and remove roots and plant detritus. Total DNA was extracted using PowerSoil kit from MoBio.

text: soil metagenome

text: Argentina Balcarce Soil: Balcarce No Till Farming


text: Christopher Burge, Biology, Massachusetts Institute of Technology

text: live

text: Generic

characteristic: cell line

text: Embryonic stem cells

characteristic: cell type

text: Mus musculus

characteristic: organism

text: mRNA-Seq analysis of control-depleted


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Embryonic stem cells

text: Mus musculus

text: mRNA-Seq analysis of Upf1-depleted

characteristic: title


text: live

text: Generic

text: Embryonic stem cells

text: Mus musculus

text: mRNA-Seq analysis of wildtype


text: live

text: Generic

text: Embryonic stem cells

text: Mus musculus

text: mRNA-Seq analysis of translationally inhibited (by cycloheximide treatment)


text: live

text: Generic

text: rabbit anti-Upf1 (Bethyl Labs Cat. No. A301-902A)

characteristic: antibody

text: Embryonic stem cells

text: Mus musculus

text: CLIP-Seq analysis of Upf1


characteristic: INSDC center name

text: live

text: Generic

text: rabbit IgG (Upstate Antibodies Cat No. 12-370)

text: Embryonic stem cells

text: Mus musculus

text: IgG control CLIP-Seq


characteristic: INSDC first public

text: live

text: Generic

text: Embryonic stem cells

text: Mus musculus

text: Ribosome footprint profiling of wildtype


text: live

text: Generic

text: Embryonic stem cells

text: Mus musculus

text: Ribosome footprint profiling of control-depleted


text: live

text: Generic

text: Embryonic stem cells

text: Mus musculus

text: Ribosome footprint profiling of Upf1-depleted


Mixed Community

text: Oak Ridge National Lab

text: live

text: Generic

text: Mixture of archaeal and bacterial synthetic communities

text: synthetic metagenome


name: Balcarce Agriculture (Conventional Tillage)

text: INDEAR

text: live

text: Generic

text: Balcarce sampling location was a 34-year crop rotation experiment located in the Southern Pampas (-37º45´09´´, -58º17´47´´). Soils in Balcarce are classified as a complex of TypicalArgiudolls and Petrocalcic/Paleudols and mean annual precipitation and temperatures are 875 mm and 13.8 ºC. The experiment was carried out as a randomized complete block design with a split-plot treatment arrangement, three replicates, and 10 by 35 m experimental units. Treatments assigned to main plots were referred to as no-till or conventional tillage (undermould board plough). This SRA sample corresponds to Conventional Tillage samples only. Rotations have included pastures and grain crops during the last 16 years. Last rotation before sampling was corn-soybean. Samples were collected on August 2010 from all treatments and replicates, a month after soybean harvest. Soil cores were taken with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 in each plot. Cores were then pooled together.Composite samples were immediately sent to the lab where they were air dried and sieved through 1 mm mesh to thoroughly homogenize, break aggregates and remove roots and plant detritus. Total DNA was extracted using PowerSoil kit from MoBio.

text: soil metagenome

text: Argentina Balcarce Soil: Balcarce Conventional Tillage


Balcarce Non Agriculture

text: INDEAR

text: live

text: Generic

text: Balcarce sampling location was a 34-year crop rotation experiment located in the Southern Pampas (-37*45*09**, -58*17*47**). Soils in Balcarce are classified as a complex of TypicalArgiudolls and Petrocalcic/Paleudols and mean annual precipitation and temperatures are 875 mm and 13.8 *C. Soil samples were taken in triplicate nearby the farmhouses where no land use has been recorded in the last 30 years except from grass mowing. This area was covered with grass and other herbaceous (non-woody) plants common in the region. Samples were collected on August 2010. Soil cores were taken with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 in each plot. Cores were then pooled together.Composite samples were immediately sent to the lab where they were air dried and sieved through 1 mm mesh to thoroughly homogenize, break aggregates and remove roots and plant detritus. Total DNA was extracted using PowerSoil kit from MoBio.

text: soil metagenome

text: Argentina Balcarce Soil: Balcarce Non Agriculture


text: Mello, Program in Molecular Medicine, University of Massachusetts Medical School

text: live

text: Generic

text: primary neonatal human foreskin fibroblasts

text: WT

characteristic: genotype/variation

text: miRNA

characteristic: molecule subtype

text: Homo sapiens

text: WT


characteristic: INSDC last update

text: live

text: Generic

text: Gld-2 knock-down

text: miRNA

text: Homo sapiens

text: Gld-2 knock-down_miRNA-seq

text: Gld-2 knock-down


Anguil Bulk Agriculture (No Till)

text: INDEAR

text: live

text: Generic

text: Anguil sampling site (-36* 35' 31.56, -63* 57' 31.05) is located in the Middle-West Argentinean Pampas, an area with entic haplustolls soils. Mean annual precipitation and temperature are 760 mm and 15.3 *C. Sampling was performed on September 2011 and wheat was recently planted in all plots under agricultural management. Three different distant areas within one 12 ha plot under no-till farming (NT) during 4 years and more that 15 years under agricultural treatment were sampled. Bulk soils were obtained from NT sampling sites with an auger from the upper 20 cm soil layer, from 20 randomly selected spots on each of the three selected areas considered as independent samples. Replicates for each plot were then pooled together and sent to the lab for further processing. Soil samples were stored at -80*C until processing. Total DNA was obtained from all bulk using PowerSoil DNA isolation kit from MoBio.

characteristic: description

text: soil metagenome

text: Argentina Anguil Bulk Soil: Anguil Bulk No Till Farming


name: Anguil Bulk Agriculture (Conventional Tillage)

characteristic: External Id

text: INDEAR

text: live

text: Generic

text: Anguil sampling site (-36* 35' 31.56, -63* 57' 31.05) is located in an area with entic haplustolls soils. Mean annual precipitation and temperature are 760 mm and 15.3 *C. Sampling was performed on September 2011 and wheat was recently planted in all plots under agricultural management. Three different plots under conventional tillage (CT) for the last 60 years were sampled. Bulk soils were obtained from CT sampling sites with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 for each plot. Replicates for each plot were then pooled together and sent to the lab for further processing. Total DNA was obtained from all bulk using PowerSoil DNA isolation kit from MoBio.

text: soil metagenome

text: Argentina Anguil Bulk Soil: Anguil Bulk Conventional Tillage


text: Washington University, Genome Sequencing Center

text: live

characteristic: INSDC status

text: Generic

text: Generic

characteristic: biosamplemodel

text: Glossina palpalis gambiensis

characteristic: sample id

text: Male

characteristic: sample name

text: rna

characteristic: sample type

text: Sample from Glossina palpalis gambiensis


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: Glossina palpalis gambiensis

characteristic: organism

text: Female

text: rna


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Glossina palpalis gambiensis

text: Larva

text: rna

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Glossina palpalis gambiensis

text: Pupea

text: rna


Anguil Bulk Non Agriculture

text: INDEAR

text: live

text: Generic

text: Anguil sampling site (-36* 35' 31.56, -63* 57' 31.05) is located in an area with entic haplustolls soils. Mean annual precipitation and temperature are 760 mm and 15.3 *C. Sampling was performed on September 2011. Two plots covered by weeping lovegrass (Eragrostis curvula) for the last 60 years and one other plot covered by herbaceous non-woody plants typical from the area were sampled as No Agriculture (NA) control. Bulk soils were obtained with an auger from the upper 20 cm soil layer, from 20 randomly selected spots within an area of ~500 m2 for each plot. Replicates for each plot were then pooled together and sent to the lab for further processing. Soil samples were stored at -80*C until processing. Total DNA was obtained from all bulk samples using PowerSoil DNA isolation kit from MoBio.

text: soil metagenome

text: Argentina Anguil Bulk Soil: Anguil Bulk Non Agriculture


text: Serra, Cell Biology, University of Alabama at Birmingham

text: live

text: Generic

characteristic: cell line

text: Control

characteristic: genotype/variation

text: Mus musculus

text: 4T1 vector transduced

characteristic: strain

text: Vector 1 RNA-Seq


characteristic: External Id

characteristic: INSDC last update

text: live

text: Generic

text: Mus musculus

text: 4T1 Wnt5a transduced

text: Wnt5a 1 RNA-Seq


text: Oak Ridge National Lab

text: live

characteristic: INSDC status

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 2


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 3


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1 hypervariable region of 16S rRNA gene from bacterial mock community, PCR performed at 52C annealing temperature


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1 hypervariable region of 16S rRNA gene from bacterial mock community, number of PCR cycles: 24


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 1


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 2


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 3


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from bacterial mock community, PCR performed at 52C annealing temperature


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from bacterial mock community, number of PCR cycles: 24


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community I, replicate 1


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community I, replicate 2


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community I, replicate 3


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community II, replicate 1


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community II, replicate 2


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community II, replicate 3


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community I, number of PCR cycles: 24


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community I,PCR performed at 52C annealing temperature


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community II, number of PCR cycles: 24


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community II,PCR performed at 50C annealing temperature


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1-V3 hypervariable region of 16S rRNA gene from bacterial mock community, number of PCR cycles: 24, replicates 1


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1-V3 hypervariable region of 16S rRNA gene from bacterial mock community, number of PCR cycles: 24, replicates 2


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1-V3 hypervariable region of 16S rRNA gene from bacterial mock community, number of PCR cycles: 24, replicates 3


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1-V3 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 1


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1-V3 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 2


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1-V3 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 3


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V3-V5 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 1


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V3-V5 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 2


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V3-V5 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 3


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V6-V9 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 1


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V6-V9 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 2


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V6-V9 hypervariable region of 16S rRNA gene from bacterial mock community, replicate 3


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4-V8 hypervariable region of 16S rRNA gene from mixed mock community, PCR with TaqHIFI enzyme


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4-V8 hypervariable region of 16S rRNA gene from mixed mock community, PCR with HighGC enzyme


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4-V8 hypervariable region of 16S rRNA gene from mixed mock community with few modification in primer compared to Fu amplicons, PCR with TaqHiFi enzyme


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4-V8 hypervariable region of 16S rRNA gene from mixed mock community with few modification in primer compared to Fu amplicons, PCR with HighGC enzyme


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4-V8 hypervariable region of 16S rRNA gene from mixed mock community with few modification in primer compared to Fu amplicons, PCR with Accuprime enzyme


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1-V3 hypervariable region of 16S rRNA gene from archaeal mock community, replicates 1


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1-V3 hypervariable region of 16S rRNA gene from archaeal mock community, replicates 2


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V1-V3 hypervariable region of 16S rRNA gene from archaeal mock community, replicates 3


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community, uses different set of primers than previous V4 for archaea, replicates 1


text: Oak Ridge National Lab

text: live

text: Generic

text: synthetic metagenome

text: Amplicons containnig V4 hypervariable region of 16S rRNA gene from archaeal mock community, uses different set of primers than previous V4 for archaea, replicates 2


name: Anguil Rhizospheric Soil Agriculture (Conventional Tillage)

text: INDEAR

text: live

text: Generic

text: Anguil sampling site (-36* 35' 31.56, -63* 57' 31.05) is located in an area with entic haplustolls soils. Mean annual precipitation and temperature are 760 mm and 15.3 *C. Sampling was performed on September 2011 and wheat was recently planted in all plots under agricultural management. Rhizospheric soil from wheat plants from three different plots under conventional tillage (CT) for the last 60 years were sampled. Plants and surrounding soil were taken with a shovel and sent to the lab where soil loosely attached to roots was disaggregated with gloved hands and finally soils attached to roots were obtained by brush scrapping. Rhizospheric soil from wheat plants on each CT sampled spot were prepared separately. Soil samples were stored at -80*C until processing. Total DNA was obtained from rhizospheric samples using PowerSoil DNA isolation kit from MoBio

characteristic: description

text: soil metagenome

text: Argentina Anguil Rhizospheric Soil: Anguil Rhizosphere Conventional Tillage


text: Harvard University

text: live

text: Generic

text: FACS-purified motor neurons

characteristic: cell type

text: Day 21 GFP high

characteristic: day of collection

text: Homo sapiens

text: Human Stem Derived Motor Neurons GFP high

text: HUES 3Hb9::GFP

text: Positive Sample 1 SL16147

text: SHH derived

characteristic: treatment


text: Harvard University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FACS-purified motor neurons

text: Day 21 GFP high

text: Homo sapiens

text: HUES 3Hb9::GFP

text: Positive Sample 2 SL16145

text: S+P derived


text: Harvard University

characteristic: INSDC secondary accession

text: live

text: Generic

text: FACS-purified motor neurons

text: Day 21 no GFP

text: Homo sapiens

characteristic: organism

text: Human Stem Derived Motor Neurons no GFP

text: HUES 3Hb9::GFP

text: Negative Sample 1 SL16148

text: S+P derived


name: Anguil Rhizospheric Soil Agriculture (No Till)

text: INDEAR

text: live

text: Generic

characteristic: SRA accession

text: Anguil sampling site (-36* 35' 31.56, -63* 57' 31.05) is located in an area with entic haplustolls soils. Mean annual precipitation and temperature are 760 mm and 15.3 *C. Sampling was performed on September 2011 and wheat was recently planted in all plots under agricultural management. Rhizospheric soil from wheat plants in one plot under no-till farming (NT) during 4 years and more that 15 years under agricultural treatment were sampled. Sampling was performed on three different distant areas within the only plot available for this treatment (12 ha) and were considered as independent plots. Plants and surrounding soil were taken with a shovel and sent to the lab where soil loosely attached to roots was disaggregated with gloved hands and finally soils attached to roots were obtained by brush scrapping. Soil samples were stored at -80*C until processing. Total DNA was obtained from rhizospheric samples using PowerSoil DNA isolation kit from MoBio

text: soil metagenome

text: Argentina Anguil Rhizospheric Soil: Anguil Rhizosphere No Till

characteristic: title


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Neisseria meningitidis 69155

text: Neisseria meningitidis 69155


text: China National Rice Research Institute

text: live

text: Generic

text: Tillering stage

characteristic: developmental stage

text: Oryza sativa

text: Root

text: cv. Xieyou9308

text: root

characteristic: tissue

text: Xieyou 9308-12 rep1


characteristic: External Id

text: China National Rice Research Institute

text: live

text: Generic

text: Tillering stage

text: Oryza sativa

text: Root

text: cv. Xieyou9308

characteristic: strain

text: root

text: Xieyou 9308-12 rep2


text: China National Rice Research Institute

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Tillering stage

text: Oryza sativa

text: Root

text: root

text: R9308-12 rep1


text: China National Rice Research Institute

text: live

text: Generic

text: Tillering stage

text: Oryza sativa

text: Root

text: root

text: R9308-12 rep2


text: China National Rice Research Institute

text: live

text: Generic

text: Tillering stage

text: Oryza sativa

text: Root

text: cv.Xieqingzao B

text: root

text: Xieqingzao B-12 rep1


text: China National Rice Research Institute

text: live

text: Generic

text: Tillering stage

text: Oryza sativa

text: Root

text: cv.Xieqingzao B

text: root

text: Xieqingzao B-12 rep2


text: China National Rice Research Institute

text: live

text: Generic

text: Heading stage

text: Oryza sativa

text: Root

text: cv. Xieyou9308

text: root

text: Xieyou 9308-34 rep1


text: China National Rice Research Institute

text: live

text: Generic

text: Heading stage

text: Oryza sativa

text: Root

text: cv. Xieyou9308

text: root

text: Xieyou 9308-34 rep2


text: China National Rice Research Institute

text: live

text: Generic

text: Heading stage

text: Oryza sativa

text: Root

text: root

text: R9308-34 rep1


text: China National Rice Research Institute

text: live

text: Generic

text: Heading stage

text: Oryza sativa

text: Root

text: root

text: R9308-34 rep2


text: China National Rice Research Institute

text: live

text: Generic

text: Heading stage

text: Oryza sativa

text: Root

text: cv.Xieqingzao B

text: root

text: Xieqingzao B-34 rep1


text: China National Rice Research Institute

text: live

text: Generic

text: Heading stage

text: Oryza sativa

text: Root

text: cv.Xieqingzao B

text: root

text: Xieqingzao B-34 rep2


text: University of California, Riverside

text: live

text: Generic

text: This is a pool of samples: #SampleID BarcodeSequence Temp PctReplantSoil PlantWeight Description 1 AACGCAC 50 100 20.81 T3A 2 AAGAGAT 50 100 13.76 T3B 3 AATCAGT 50 100 13.91 T3C 4 AATCGTG 50 100 13.18 T3D 5 ACACACT 50 100 18.75 T3E 6 ACACATG 50 100 17.08 T3F 7 ACACGGT 40 100 17.93 T4A 8 ACACTAG 40 100 11.64 T4B 9 ACAGCAG 40 100 8.67 T4C 10 ACAGTGC 40 100 17.82 T4D 11 ACAGTTG 40 100 13.67 T4E 12 ACATCAC 40 100 16.68 T4F 13 ACATGTC 0 100 10.84 T5A 14 ACATTCA 0 100 11.38 T5B 15 ACCACAT 0 100 7.79 T5C 16 ACCAGAC 0 100 14.2 T5D 17 ACCAGCG 0 1 16.86 M3A 18 ACCTCGA 0 1 20.46 M3B 19 ACGAGTG 0 1 16.07 M3C 20 ACGATGC 0 1 16.95 M3D 21 ACGCAAC 0 1 17.83 M3E 22 ACGCGCA 0 1 17.89 M3F 23 ACGCTAT 0 10 17.1 M4A 24 ACGGTGA 0 10 17.51 M4B 25 ACGTCTG 0 10 13.05 M4C 26 ACGTGCC 0 10 14.44 M4D 27 ACGTTAG 0 10 15.08 M4E 28 ACTACAG 0 100 14.72 M5A 29 ACTACGT 0 100 10.2 M5B 30 ACTAGCT 0 100 11.15 M5C 31 ACTCAGA 0 100 4.32 M5D 32 ACTCGAT 0 100 9.4 M5E

characteristic: description

text: root metagenome

text: UCR Peach Replant Disease Study (root metagenome)


CSM1235 head

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the head of a Cephalotes varians ant.

text: Cephalotes

text: Surveying the microbiome of ants: Comparing 454 pyrosequencing with traditional methods to uncover bacterial diversity


CSM1280 wk-1

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from a Cephalotes varians ant.

text: Cephalotes


CSM1280 crop-2

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the crops of two Cephalotes varians ants.

text: Cephalotes


CSM1280 head-2

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the head of two Cephalotes varians ants.

text: Cephalotes


CSM1280 hindgut-2

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the hindguts of two Cephalotes varians ants.

text: Cephalotes


CSM1280 midgut-2

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the midgut of two Cephalotes varians ants.

text: Cephalotes


CSM1280 crop-3

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the crops of three Cephalotes varians ants.

text: Cephalotes


CSM1280 head-3

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the heads of three Cephalotes varians ants.

text: Cephalotes


CSM1280 hindgut-3

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the hindguts of three Cephalotes varians ants.

text: Cephalotes


CSM1280 midgut-3

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the midguts of three Cephalotes varians ants.

text: Cephalotes


CSM1323 1-gut

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the gut of a Cephalotes varians ant.

text: Cephalotes


CSM1323 3-guts

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the guts of three Cephalotes varians ants.

text: Cephalotes


CSM1323 1-head

text: University of Chicago

text: live

text: Generic

text: Cephalotes


text: UC Davis

text: live

text: Generic

text: synthetic construct


CSM1323 3-heads

text: University of Chicago

text: live

text: Generic

text: Cephalotes


CSM1323 1-leg

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from the leg of a Cephalotes varians ant.

text: Cephalotes


CSM1323 3-legs

text: University of Chicago

text: live

text: Generic

text: These are bacterial 16S sequences from three legs of a Cephalotes varians ant.

text: Cephalotes


CSM1396 gut

text: University of Chicago

text: live

text: Generic

text: Cephalotes


CSM1396 leg

text: University of Chicago

text: live

text: Generic

text: Cephalotes


CIB RC RNA sample 1

text: Chengdu Institute of Biology, Chinese Academy of Sciences, China

text: live

text: Generic

text: The samples were collected from Qingchuan county in China.

text: Rana chensinensis

text: Rana chensinensis RNA sample of CIB


CIB RK RNA sample 1

text: live

text: Generic

text: The samples were collected from Zoige county in China.

text: Rana kukunoris

text: Rana kukunoris RNA sample of CIB


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: human gut metagenome

characteristic: sample name

text: Generic sample from unclassified Bacteria (miscellaneous)


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: human gut metagenome

text: Generic sample from unclassified sequences


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: female

characteristic: host sex

text: human gut metagenome


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: male

text: human gut metagenome

characteristic: organism


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Male

text: unclassified sequences

characteristic: title


M.mul testis (PhD)

text: Johannes Gutenberg University Mainz

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Macaca mulatta

text: Macaca mulatta testis tissue (DPZ)


C.jac testis (PhD)

text: Johannes Gutenberg University Mainz

text: live

text: Generic

text: Callithrix jacchus

text: Callithrix jacchus testis tissue (DPZ)


H.sap testis (PhD)

text: Johannes Gutenberg University Mainz

text: live

text: Generic

text: Homo sapiens

text: Homo sapiens testis tissue (Universit*tsmedizin Mainz)


M.mur testis (PhD)

text: Johannes Gutenberg University Mainz

text: live

text: Generic

text: Microcebus murinus

text: Microcebus murinus testis tissue (Bochum)


L.tar testis (PhD)

text: Johannes Gutenberg University Mainz

text: live

text: Generic

text: Loris tardigradus

text: Loris tardigradus testis tissue (FRA)


Pollen

text: University of North Carolina at Charlotte

text: live

text: Generic

text: Library prepared from RNA extracted from pollen.

text: Arabidopsis thaliana

text: pollen


text: live

text: Generic

text: Leaves collected from three-week old Arabidopsis plants.

text: Arabidopsis thaliana

text: drought control 2


text: live

text: Generic

text: Arabidopsis thaliana

text: Drought Control 2


cold control

text: live

text: Generic

text: Arabidopsis thaliana

text: cold control


cold treatment

text: live

text: Generic

text: Arabidopsis thaliana

text: cold treatment


drought treatment 1

text: live

text: Generic

text: Arabidopsis thaliana

text: drought treatment 1


drought treatment 2

text: live

text: Generic

text: Arabidopsis thaliana

text: drought treatment 2


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Neisseria meningitidis 69176

text: Neisseria meningitidis 69176


text: live

text: Generic

text: Neisseria meningitidis 70021

text: Neisseria meningitidis 70021


text: live

text: Generic

text: Neisseria meningitidis 2000080

text: Neisseria meningitidis 2000080


text: live

text: Generic

text: Neisseria meningitidis 96060

text: Neisseria meningitidis 96060


text: live

text: Generic

text: Neisseria meningitidis 94018

text: Neisseria meningitidis 94018


text: live

text: Generic

text: Neisseria meningitidis 75643

text: Neisseria meningitidis 75643


text: live

text: Generic

text: Neisseria meningitidis 75689

text: Neisseria meningitidis 75689


text: live

text: Generic

text: Neisseria meningitidis 69100

text: Neisseria meningitidis 69100


text: live

text: Generic

text: Neisseria meningitidis 97018

text: Neisseria meningitidis 97018


text: live

text: Generic

text: Neisseria meningitidis 63023

text: Neisseria meningitidis 63023


text: live

text: Generic

text: Neisseria meningitidis 61106

text: Neisseria meningitidis 61106


text: live

text: Generic

text: Neisseria meningitidis 70082

text: Neisseria meningitidis 70082


text: live

text: Generic

text: Neisseria meningitidis 65012

text: Neisseria meningitidis 65012


text: live

text: Generic

text: Neisseria meningitidis 64182

text: Neisseria meningitidis 64182


text: live

text: Generic

text: Neisseria meningitidis 97027

text: Neisseria meningitidis 97027


text: live

text: Generic

text: Neisseria meningitidis 96024

text: Neisseria meningitidis 96024


text: live

text: Generic

text: Neisseria meningitidis 97008

text: Neisseria meningitidis 97008


text: live

text: Generic

text: Neisseria meningitidis 98005

text: Neisseria meningitidis 98005


text: live

text: Generic

text: Neisseria meningitidis 2004085

text: Neisseria meningitidis 2004085


text: live

text: Generic

text: Neisseria meningitidis 2003022

text: Neisseria meningitidis 2003022


text: live

text: Generic

text: Neisseria meningitidis 2000063

text: Neisseria meningitidis 2000063


text: live

text: Generic

text: Neisseria meningitidis 2002007

text: Neisseria meningitidis 2002007


text: live

text: Generic

text: Neisseria meningitidis NM604

text: Neisseria meningitidis NM604


text: live

text: Generic

text: Neisseria meningitidis NM606

text: Neisseria meningitidis NM606


text: live

text: Generic

text: Neisseria meningitidis NM607

text: Neisseria meningitidis NM607


text: live

text: Generic

text: Neisseria meningitidis NM133

text: Neisseria meningitidis NM133


text: live

text: Generic

text: Neisseria meningitidis NM23

text: Neisseria meningitidis NM23


text: live

text: Generic

text: Neisseria meningitidis NM32

text: Neisseria meningitidis NM32


text: live

text: Generic

text: Neisseria meningitidis NM35

text: Neisseria meningitidis NM35


text: live

text: Generic

text: Neisseria meningitidis NM36

text: Neisseria meningitidis NM36


text: live

text: Generic

text: Neisseria meningitidis NM43

text: Neisseria meningitidis NM43


text: live

text: Generic

text: Neisseria meningitidis NM82

text: Neisseria meningitidis NM82


text: live

text: Generic

text: Neisseria meningitidis NM94

text: Neisseria meningitidis NM94


text: live

text: Generic

text: Neisseria meningitidis NM95

text: Neisseria meningitidis NM95


text: live

text: Generic

text: Neisseria meningitidis NM313

text: Neisseria meningitidis NM313


text: live

text: Generic

text: Neisseria meningitidis NM1482

text: Neisseria meningitidis NM1482


text: live

text: Generic

text: Neisseria meningitidis NM1495

text: Neisseria meningitidis NM1495


text: live

text: Generic

text: Neisseria meningitidis 73696

text: Neisseria meningitidis 73696


text: live

text: Generic

text: Neisseria meningitidis 73704

text: Neisseria meningitidis 73704


text: live

text: Generic

text: Neisseria meningitidis 81858

text: Neisseria meningitidis 81858


text: live

text: Generic

text: Neisseria meningitidis 2002020

text: Neisseria meningitidis 2002020


text: live

text: Generic

text: Neisseria meningitidis NM477

text: Neisseria meningitidis NM477


text: live

text: Generic

text: Neisseria meningitidis M13265

text: Neisseria meningitidis M13265


text: live

text: Generic

text: Neisseria meningitidis NM3147

text: Neisseria meningitidis NM3147


text: live

text: Generic

text: Neisseria meningitidis 2001072

text: Neisseria meningitidis 2001072


text: live

text: Generic

text: Neisseria meningitidis 2001073

text: Neisseria meningitidis 2001073


text: live

text: Generic

text: Neisseria meningitidis 2000081

text: Neisseria meningitidis 2000081


text: live

text: Generic

text: Neisseria meningitidis 2001001

text: Neisseria meningitidis 2001001


text: live

text: Generic

text: Neisseria meningitidis 2004032

text: Neisseria meningitidis 2004032


text: live

text: Generic

text: Neisseria meningitidis 2001213

text: Neisseria meningitidis 2001213


text: live

text: Generic

text: Neisseria meningitidis 2004264

text: Neisseria meningitidis 2004264


text: live

text: Generic

text: Neisseria meningitidis 2000175

text: Neisseria meningitidis 2000175


text: live

text: Generic

text: Neisseria meningitidis 2005079

text: Neisseria meningitidis 2005079


text: live

text: Generic

text: Neisseria meningitidis 2001068

text: Neisseria meningitidis 2001068


text: live

text: Generic

text: Neisseria meningitidis 2005040

text: Neisseria meningitidis 2005040


text: live

text: Generic

text: Neisseria meningitidis 2002004

text: Neisseria meningitidis 2002004


text: live

text: Generic

text: Neisseria meningitidis 2007461

text: Neisseria meningitidis 2007461


text: live

text: Generic

text: Neisseria meningitidis NM134

text: Neisseria meningitidis NM134


text: live

text: Generic

text: Neisseria meningitidis 98002

text: Neisseria meningitidis 98002


text: live

text: Generic

text: Neisseria meningitidis 2005172

text: Neisseria meningitidis 2005172


text: live

text: Generic

text: Neisseria meningitidis 2008223

text: Neisseria meningitidis 2008223


text: live

text: Generic

text: Neisseria meningitidis 2003051

text: Neisseria meningitidis 2003051


text: live

text: Generic

text: Neisseria meningitidis NM271

text: Neisseria meningitidis NM271


text: National Institute of Allergy and Infectious Diseases

text: live

text: Generic

text: A female specimem of Desmodos rotundus was collected with nets, near the city of Botucatu, at Sao Paulo State, Brazil. The principal and accessory glands were identified based on the anatomical studies by DiSanto (Disanto, 1960). After a ventral incision, the glands were removed, carefully cleaned from surrounding tissues, cut in 2 pieces and immediately placed in RNA later (Ambion). After 2 days at 4oC, the glands were removed and placed in a petri dish. Then, a scalp was used to remove 2 pieces from the right anterior principal gland - one from the central part (named 7C - not used for library construction) and one from the periphery (7L) of the gland. Two other pieces from the right posterior principal gland - one from the central part (8M) and one from the peripheral part (8L) of the gland were also taken. On piece was obtained from the center of the right (AC) accessory gland. mRNA was isolated essentially as described using a Micro-FastTrack 2.0 mRNA Isolation Kit (Invitrogen, CA)(Francischetti et al., 2005). The mRNA content was estimated by Pico RNA assay (Perkin Elmer): 7L, 55.95 ng/ml; 7C, 17.18 ng/ml; 8L, 24.35 ng/ml; 8M, 29.96 ng/ml and AC, 28.57 ng/ml.

text: Desmodus rotundus

text: Desmodus rotundus principal salivary gland - lateral tissue


text: live

text: Generic

text: Neisseria meningitidis NM115

text: Neisseria meningitidis NM115


text: live

text: Generic

text: Neisseria meningitidis NM90

text: Neisseria meningitidis NM90


text: live

text: Generic

text: Neisseria meningitidis NM3042

text: Neisseria meningitidis NM3042


text: live

text: Generic

text: Neisseria meningitidis NM3222

text: Neisseria meningitidis NM3222


text: live

text: Generic

text: Neisseria meningitidis NM3131

text: Neisseria meningitidis NM3131


text: DBI, Plant and Soil Sciences, University of Delaware

text: live

text: Generic

text: Amborella trichopoda

text: opened female flower tissue

text: opened female flower tissue

characteristic: tissue

text: Amborella opened female flowers_sRNA-seq


characteristic: External Id

text: live

text: Generic

text: Amborella trichopoda

text: leaf tissue

text: leaf tissue

text: Amborella leaf_sRNA-seq


text: live

text: Generic

text: Amborella trichopoda

text: leaf tissue

text: leaf tissue

text: Amborella leaf_degradome


text: live

text: Generic

text: Amborella trichopoda

text: opened female flower tissue

text: opened female flower tissue

text: Amborella opened female flowers_degradome


text: live

text: Generic

text: Neisseria meningitidis NM3144

characteristic: strain

text: Neisseria meningitidis NM3144


Anguil Rhizosphere 16S Amplicons

text: INDEAR

characteristic: INSDC last update

text: live

text: Generic

text: Anguil sampling site (-36° 35' 31.56, -63° 57' 31.05) is located in an area with entic haplustolls soils. Mean annual precipitation and temperature are 760 mm and 15.3 ºC. Sampling was performed on September 2011 and wheat was recently planted in all plots under agricultural management. Three different plots under conventional tillage (CT) for the last 60 years and three different areas within one 12 ha plot under no-till farming (NT) during 4 years and more that 15 years under agricultural treatment were sampled. Rhizospheric soil from wheat plants on each NT and CT sampled spot was prepared. Plants and surrounding soil were taken with a shovel and sent to the lab where soil loosely attached to roots was disaggregated with gloved hands and finally soils attached to roots were obtained by brush scrapping. Soil samples were stored at -80°C until processing. Total DNA was obtained from all rhizospheric samples using PowerSoil DNA isolation kit from MoBio. Total RNA was obtained from NT and CT rhizospheric samples using PowerSoil Total RNA purification kit from MoBio. Single strand cDNA (cDNAss) was prepared from total RNA for further PCR amplification of pyrotags using first-strand cDNA synthesis system kit from Roche. Purification of prokaryotic mRNA was performed using MicrobeExpress kit from Ambion and double-stranded cDNA was prepared from mRNA using cDNA synthesis system kit from Roche. Pyrotags from gDNA and cDNA were generated by 16S rDNA V4 region amplification using F563-R802 primers developed by Ribosomal Database Project.

text: soil metagenome

text: Argentina Anguil Rhizospheric Soil: All sample amplicons from cDNA and gDNA


text: live

characteristic: INSDC status

text: Generic

text: Neisseria meningitidis NM3158

text: Neisseria meningitidis NM3158


text: live

text: Generic

text: Neisseria meningitidis NM3164

text: Neisseria meningitidis NM3164


text: Gene Expression Omnibus

text: live

text: Generic

text: University of Washington, Congenital Defects Lab. Ian Glass

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: fetal

characteristic: collection method

text: Fetal Kidney primary tissue, day 113

characteristic: description

text: day 113

characteristic: donor age

characteristic: donor id

text: Female

characteristic: donor sex

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: UW

characteristic: tissue depot

text: Fetal Kidney

characteristic: tissue type

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Primary Tissue

text: fetal

text: Fetal Kidney, Right primary tissue, day 98

text: day 98

text: Female

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: UW

text: Fetal Kidney, Right

text: Generic sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: biomaterial provider

text: Primary Tissue

text: fetal

text: Fetal Muscle, Arm primary tissue, day 101

text: day 101

text: Male

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Muscle, Arm

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: Primary Tissue

characteristic: biomaterial type

text: fetal

characteristic: collection method

text: Fetal Stomach primary tissue, day 96

characteristic: description

text: day 96

characteristic: donor age

characteristic: donor id

text: Female

text: genomic DNA

text: Homo sapiens

text: UW

text: Fetal Stomach

text: Generic sample from Homo sapiens


text: Washington University, Genome Sequencing Center

characteristic: INSDC center name

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Glossina fuscipes fuscipes

characteristic: sample id

characteristic: sample name

text: genomic dna

characteristic: sample type

text: Sample from Glossina fuscipes fuscipes


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Neisseria meningitidis NM27

characteristic: organism

characteristic: strain

text: Neisseria meningitidis NM27


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Neisseria meningitidis NM51

text: Neisseria meningitidis NM51

characteristic: title


text: live

text: Generic

text: Neisseria meningitidis NM80

text: Neisseria meningitidis NM80


text: live

text: Generic

text: Neisseria meningitidis NM165

text: Neisseria meningitidis NM165


text: University of California, Los Angeles

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

characteristic: passages

text: IMR90 human lung fibroblasts

text: control siRNA

characteristic: transfection


text: University of California, Los Angeles

characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: IMR90 human lung fibroblasts

text: siRNA targeting H1.5


text: live

text: Generic

text: Neisseria meningitidis NM3223

text: Neisseria meningitidis NM3223


DrSgPrincipalMedialCentral

text: live

text: Generic

text: Desmodus rotundus

text: Desmodus rotundus principal salivary gland - medial lobe - central tissue