text: LMI, NHLBI, NIH

text: live

text: Generic

characteristic: NCBI submission model

text: embryonic stem cells

text: shluc control for shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shluc control, RARa-ChIP


status: PUBLIC

characteristic: External Id

text: LMI, NHLBI, NIH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: cell line

text: embryonic stem cells

characteristic: cell type

text: shH2A.Z mES cells

characteristic: condition

text: Mus musculus

characteristic: organism

text: mouse ES cells, shH2A.Z, Oct4-ChIP

characteristic: title


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shH2A.Z, H3K4me3 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shH2A.Z, H3K27me3 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shH2A.Z, RbBP5 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shH2A.Z, Suz12 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shH2A.Z mES cells

text: Mus musculus

text: mouse ES cells, shH2A.Z, RARa-ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shluc control for shMLL4 mES cells

text: Mus musculus

text: mouse ES cells, shluc control, H3K4me3 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shluc control for shMLL4 mES cells

text: Mus musculus

text: mouse ES cells, shluc control, H2AZ ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shMLL4 mES cells

text: Mus musculus

text: mouse ES cells, shMLL4, H3K4me3 ChIP


text: LMI, NHLBI, NIH

text: live

text: Generic

text: embryonic stem cells

text: shMLL4 mES cells

text: Mus musculus

text: mouse ES cells, shMLL4, H2AZ ChIP


text: Dr. Friedmann's laboratory, Pediatrics, University of California, San Diego

text: live

text: Generic

text: spherical neural mass derived form D3 embryonic stem cells

text: neuronal differentiation

characteristic: development

characteristic: differentiation day

text: Mus musculus

text: D3 embryonic stem cell

characteristic: strain

text: Control SNM (0 day)

text: infected by retrovirus with shRNA against luciferase

characteristic: treatment


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission model

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: Control SNM (1 day)


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: Control SNM (2 day)


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: Control SNM (3 day)


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: Control SNM (4 day)


text: live

text: Generic

characteristic: SRA accession

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: Control SNM (6 day)


text: live

text: Generic

characteristic: cell type

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: Control SNM (8 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: Control SNM (10 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: Control SNM (12 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: Control SNM (14 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: HPRT knockdown SNM (0 day)

text: infected by retrovirus with shRNA against HPRT


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: HPRT knockdown SNM (1 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: HPRT knockdown SNM (2 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: HPRT knockdown SNM (3 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: HPRT knockdown SNM (4 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: HPRT knockdown SNM (6 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: HPRT knockdown SNM (8 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: HPRT knockdown SNM (10 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: HPRT knockdown SNM (12 day)


text: live

text: Generic

text: neuronal differentiation

text: Mus musculus

text: D3 embryonic stem cell

text: HPRT knockdown SNM (14 day)


text: Chris R. Somerville, Energy Biosciences Institute, UC Berkeley

text: live

text: Generic

text: 1% Pectin

characteristic: carbon source

text: mycelia

text: Neurospora crassa OR74A

text: FGSC 2489

text: 4 hours

characteristic: time after media shift


text: live

text: Generic

text: 1% Orange peel powder

text: mycelia

text: Neurospora crassa OR74A

characteristic: organism

text: FGSC 2489

text: 4 hours

characteristic: title


text: live

text: Generic

text: 2% Xylan

text: mycelia

text: Neurospora crassa OR74A

text: FGSC 2489

text: 4 hours


text: live

text: Generic

text: 2% Avicel (microcrystalline cellulose)

text: mycelia

text: Neurospora crassa OR74A

text: FGSC 2489

text: 4 hours


text: live

text: Generic

text: No Carbon

text: mycelia

text: Neurospora crassa OR74A

text: FGSC 2489

text: 4 hours


text: live

text: Generic

text: 2% Sucrose

text: mycelia

text: Neurospora crassa OR74A

text: FGSC 2489

text: 4 hours


text: DOE Joint Genome Institute

text: live

text: Generic

text: Panchlora foregut metagenome

characteristic: description

text: gut metagenome

characteristic: sample number

text: Sample from gut metagenome


text: Yijun Qi's lab, National Institute of Biological Sciences

text: live

text: Generic

text: 14-day old

characteristic: developmental stage

characteristic: ecotype

text: polyA+ RNA

characteristic: molecule

text: Arabidopsis thaliana

text: polyA+ RNAs from whole cell extract, seedling

text: seedling

characteristic: tissue


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: 14-day old

text: total RNA, rRNA depleted

text: Arabidopsis thaliana

text: total RNAs from whole cell extract, seedling

text: seedling


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: 14-day old

text: non-polyA RNA, rRNA depleted

text: Arabidopsis thaliana

text: non-polyA RNAs from whole cell extract, seedling

text: seedling


text: live

text: Generic

characteristic: SRA accession

text: 14-day old

text: total RNA, rRNA depleted

text: Arabidopsis thaliana

text: total RNAs from cytoplasmic extract, seedling

text: seedling


text: live

text: Generic

text: 14-day old

text: non-polyA RNA, rRNA depleted

text: Arabidopsis thaliana

characteristic: organism

text: non-polyA RNAs from cytoplasmic extract, seedling

text: seedling


text: live

text: Generic

text: 14-day old

text: total RNA, rRNA depleted

text: Arabidopsis thaliana

text: total RNAs from nuclear extract, seedling

text: seedling

characteristic: title


text: live

text: Generic

text: 14-day old

text: non-polyA RNA, rRNA depleted

text: Arabidopsis thaliana

text: non-polyA RNAs from nuclear extract, seedling

text: seedling


text: live

text: Generic

text: 28-day old

text: polyA+ RNA

text: Arabidopsis thaliana

text: polyA+ RNAs from whole cell extract, inflorescence

text: inflorescence


text: live

text: Generic

text: 28-day old

text: total RNA, rRNA depleted

text: Arabidopsis thaliana

text: total RNAs from nuclear extract, inflorescence

text: inflorescence


text: live

text: Generic

text: 14-day old

text: RNA

text: Arabidopsis thaliana

text: mock RIP-seq, seedling

text: seedling

text: mock RIP-seq, seedling


text: live

text: Generic

text: 14-day old

text: RNA

text: Arabidopsis thaliana

text: CLF RIP-seq, seedling

text: seedling

text: CLF RIP-seq, seedling


text: live

text: Generic

text: 14-day old

text: genomic DNA

text: Arabidopsis thaliana

text: H3K27me3 ChIP-seq, seedling

text: seedling

text: H3K27me3 ChIP-seq, seedling


text: University of Hong Kong, Genome Research Centre

text: live

text: Generic

text: female

characteristic: gender

text: size-selected RNA

characteristic: molecule subtype

text: Oryzias melastigma

text: breeding marine medaka

text: brain

text: Fbrain


text: live

text: Generic

text: female

text: size-selected RNA

text: Oryzias melastigma

text: breeding marine medaka

text: liver

text: Fliver


text: live

text: Generic

text: female

text: size-selected RNA

text: Oryzias melastigma

text: breeding marine medaka

text: ovaries

text: Fovary


text: live

text: Generic

text: male

text: size-selected RNA

text: Oryzias melastigma

text: breeding marine medaka

text: brain

text: Mbrain


text: live

text: Generic

text: male

text: size-selected RNA

text: Oryzias melastigma

text: breeding marine medaka

text: liver

text: Mliver


text: live

text: Generic

text: male

text: size-selected RNA

text: Oryzias melastigma

text: breeding marine medaka

text: testes

text: Mtestis


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Pteropus alecto

text: Pteropus alecto

text: Pteropus alecto

characteristic: species

text: Pteropus alecto


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Myotis davidii

text: Myotis davidii

text: Myotis davidii

text: Myotis davidii


Crotalus transcriptome

text: University of Arkansas

text: live

text: Generic

text: Mixed tissue poly A RNA from single male neonate: includes head, blood, heart, digestive tract, mixed internal organs, muscle.

characteristic: description

text: neonate

characteristic: dev stage

text: Crotalus horridus

text: male

characteristic: sex

text: RNAseq data for single male mixed tissue Crotalus horridus


characteristic: External Id

text: University of California, Irvine

text: live

text: Generic

text: Brachypodium distachyon

text: Brachypodium distachyon leaf rep 1 BS-seq


text: University of California, Irvine

characteristic: INSDC center name

text: live

text: Generic

text: Brachypodium distachyon

text: Brachypodium distachyon leaf rep 2 BS-seq


text: Dong Lab at University of North Texas

characteristic: INSDC first public

text: live

text: Generic

characteristic: age

text: D-

characteristic: diabetes status

text: human oral metagenome

characteristic: periodontal-depth

text: P-

characteristic: periodontitis-status

text: female

text: Generic sample from human oral metagenome


text: Dong Lab at University of North Texas

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: D-

text: human oral metagenome

text: P-

text: male


text: Dong Lab at University of North Texas

text: live

text: Generic

characteristic: SRA accession

text: D+

text: human oral metagenome

characteristic: organism

text: P-

text: male

characteristic: title


text: Dong Lab at University of North Texas

text: live

text: Generic

text: D+

text: human oral metagenome

text: P+

text: female


text: Dong Lab at University of North Texas

text: live

text: Generic

text: D+

text: human oral metagenome

text: P-

text: female


text: Dong Lab at University of North Texas

text: live

text: Generic

text: D+

text: human oral metagenome

text: P+

text: male


text: Dong Lab at University of North Texas

text: live

text: Generic

text: D-

text: human oral metagenome

text: P+

text: male


text: Dong Lab at University of North Texas

text: live

text: Generic

text: D-

text: human oral metagenome

text: P+

text: female


text: dbGaP

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: whole blood

characteristic: body site

text: ASP

text: mRNA Expression (Array)

characteristic: molecular data type

text: Homo sapiens

text: Interventional

characteristic: study design

text: Aspirin Pharmacogenomics

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: RNA sample from whole blood of a human participant in the dbGaP study Aspirin Pharmacogenomics


characteristic: External Id

text: Beijing Genomics Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


Greenleaf

text: Beijing Genomics Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Sorghum bicolor

characteristic: organism

text: Generic sample from Sorghum bicolor


Early Hegari

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor

characteristic: title


Karper 669

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


Macia

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


Malisor 84-7

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


Rio

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


S. bicolor subsp. drummondii (PI330272)

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


name: S. bicolor subsp. verticilliflorum (PI300119)

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum arundinaceum

text: Generic sample from Sorghum bicolor subsp. verticilliflorum


S. bicolor (PI226096)

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


name: S. bicolor subsp. verticilliflorum (AusTRCF 317961)

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum arundinaceum


S. propinquum 369-1

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum propinquum

text: Generic sample from Sorghum propinquum


S. propinquum 369-2

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum propinquum

text: Generic sample from Sorghum propinquum


Yik.solate (IBC/E-339)

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


Kilo (IBC/E-382)

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


Cherekit (IBC/E-460)

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


Zengada (IBC/E-308)

text: Beijing Genomics Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


text: King Abdullah University

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

characteristic: biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIMARKS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: env package

text: marine coral reef deep fore reef

characteristic: feature

text: Saudi Arabia

characteristic: geo loc name

text: miens-survey

characteristic: investigation type

text: 22.30555 N 38.9628 E

characteristic: lat lon

text: organic material

characteristic: material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

characteristic: project name

text: Acropora hemprichii

characteristic: specific host

text: Week 1 cage A


characteristic: External Id

text: King Abdullah University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 1 cage fertilizer A


text: King Abdullah University

text: live

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: SRA accession

text: marine coral reef biome

characteristic: biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

characteristic: organism

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 1 fertilizer A

characteristic: title


text: King Abdullah University

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIMARKS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: env package

text: marine coral reef deep fore reef

characteristic: feature

text: Saudi Arabia

characteristic: geo loc name

text: miens-survey

characteristic: investigation type

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 1 cage B


characteristic: External Id

text: King Abdullah University

characteristic: INSDC center name

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

characteristic: lat lon

text: organic material

characteristic: material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

characteristic: project name

text: Acropora hemprichii

characteristic: specific host

text: Week 1 cage fertilizer B


text: King Abdullah University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

text: marine coral reef biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 1 fertilizer B


text: King Abdullah University

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

characteristic: SRA accession

text: marine coral reef biome

characteristic: biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIMARKS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

characteristic: organism

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 1 cage C

characteristic: title


characteristic: External Id

text: King Abdullah University

characteristic: INSDC center name

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: env package

text: marine coral reef deep fore reef

characteristic: feature

text: Saudi Arabia

characteristic: geo loc name

text: miens-survey

characteristic: investigation type

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 1 cage fertilizer C


text: King Abdullah University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

characteristic: lat lon

text: organic material

characteristic: material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

characteristic: project name

text: Acropora hemprichii

characteristic: specific host

text: Week 1 fertilizer C


text: King Abdullah University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: SRA accession

text: marine coral reef biome

characteristic: biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 5 cage A


characteristic: External Id

text: King Abdullah University

characteristic: INSDC center name

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIMARKS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

characteristic: organism

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 5 fertilizer A

characteristic: title


text: King Abdullah University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: env package

text: marine coral reef deep fore reef

characteristic: feature

text: Saudi Arabia

characteristic: geo loc name

text: miens-survey

characteristic: investigation type

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 5 cage B


text: King Abdullah University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

characteristic: lat lon

text: organic material

characteristic: material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

characteristic: project name

text: Acropora hemprichii

characteristic: specific host

text: Week 5 cage fertilizer B


characteristic: External Id

text: King Abdullah University

characteristic: INSDC center name

text: live

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: SRA accession

text: marine coral reef biome

characteristic: biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 5 fertilizer B


text: King Abdullah University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIMARKS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

characteristic: organism

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 5 cage C

characteristic: title


text: King Abdullah University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: env package

text: marine coral reef deep fore reef

characteristic: feature

text: Saudi Arabia

characteristic: geo loc name

text: miens-survey

characteristic: investigation type

text: 22.30555 N 38.9628 E

text: organic material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

text: Acropora hemprichii

text: Week 5 cage fertilizer C


characteristic: External Id

text: King Abdullah University

characteristic: INSDC center name

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: marine coral reef biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.host-associated

text: marine coral reef deep fore reef

text: Saudi Arabia

text: miens-survey

text: 22.30555 N 38.9628 E

characteristic: lat lon

text: organic material

characteristic: material

text: coral metagenome

text: Acropora hemprichii Targeted Locus

characteristic: project name

text: Acropora hemprichii

characteristic: specific host

text: Week 5 fertilizer C


ss

text: 2Bio Instituto de Bioinformatica e Biotecnologia

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: SS

characteristic: label

text: Homo sapiens

text: General Sample for Homo sapiens


text: Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Helicoverpa assulta for four development stages of embryo, larva, pupa and adult

characteristic: description

text: Helicoverpa assulta

characteristic: organism

characteristic: title


Morganella morganii SC01

text: Institute of Microbial Technology

text: live

characteristic: INSDC status

text: Generic

text: Morganella morganii SC01

characteristic: strain

text: Morganella morganii SRA


characteristic: External Id

text: Epigenetics section, MRC Clinical Sciences Centre

characteristic: INSDC center name

text: live

text: Generic

text: adult

characteristic: developmental stage

text: wild-type

characteristic: genotype/variation

text: Mus musculus

text: CD43 negative mouse resting B cells

characteristic: strain background

text: spleen

characteristic: tissue

text: Aurora B


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: adult

text: wild-type

text: Mus musculus

text: CD43 negative mouse resting B cells

text: spleen


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: adult

text: Aurora B KO (Homozygous Rosa26-CreERT2/Aurkb flox)

text: Mus musculus

text: CD43 negative mouse resting B cells

text: mixed

text: spleen

text: Aurora B KO

text: 250 nM 4-hydroxytamoxifen for 48hrs

characteristic: treated with


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: adult

text: RING1B KO (Homozygous Rosa26-CreERT2/Rnf2 flox)

text: Mus musculus

text: CD43 negative mouse resting B cells

text: mixed

text: spleen

text: Ring1B KO

text: 250 nM 4-hydroxytamoxifen for 48hrs


text: live

text: Generic

text: adult

text: Homozygous Rosa26-CreERT2

text: Mus musculus

characteristic: organism

text: CD43 negative mouse resting B cells

text: mixed

text: spleen

text: 8WG16 WT

text: 250 nM 4-hydroxytamoxifen for 48hrs


text: live

text: Generic

text: adult

text: Mus musculus

text: CD43 negative mouse resting B cells

text: mixed

text: spleen

text: 8WG16 Ring1B KO

characteristic: title

text: 250 nM 4-hydroxytamoxifen for 48hrs


text: live

characteristic: INSDC status

text: Generic

text: adult

text: Homozygous Rosa26-CreERT2

text: Mus musculus

text: CD43 negative mouse resting B cells

text: mixed

text: spleen

text: RNAP-S5ph WT

text: 250 nM 4-hydroxytamoxifen for 48hrs


text: live

text: Generic

text: adult

text: Mus musculus

text: CD43 negative mouse resting B cells

text: mixed

text: spleen

text: RNAP-S5ph AurkB KO

text: 250 nM 4-hydroxytamoxifen for 48hrs


text: live

text: Generic

text: CD43 negative mouse resting B cells

characteristic: cell type

text: adult

text: wild type

text: Mus musculus

text: CD43 negative mouse resting B cells

characteristic: strain

text: Spleen

text: Resting B cells Replicate 1


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: CD43 negative mouse resting B cells

text: adult

text: wild type

text: Mus musculus

text: CD43 negative mouse resting B cells

text: Spleen

text: Resting B cells Replicate 2


text: live

text: Generic

text: CD43 negative mouse resting B cells

text: adult

characteristic: developmental stage

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: CD43 negative mouse resting B cells

text: Spleen

text: Resting B cells Replicate 3


text: live

text: Generic

text: CD43 negative mouse resting B cells

text: adult

text: wild type

text: Mus musculus

text: CD43 negative mouse resting B cells

text: Spleen

characteristic: tissue

text: Resting B cells Replicate 4


text: PGFE, UMass Medical School

characteristic: INSDC first public

text: live

text: Generic

text: ZFP library

characteristic: library

text: bacterial one-hybrid (B1H) selected

characteristic: library selection

text: synthetic construct

text: synthetic library


Chd5 mouse chip-seq

text: Cold Spring Harbor Lab

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Chromodomain Helicase DNA-binding protein 5 (CHD5) is a tumor suppressor mapping to 1p36-a genomic region frequently deleted in human cancer. Although CHD5 belongs to the CHD family of chromatin remodeling proteins, whether its tumor suppressive role involves an interaction with chromatin is unknown. Here we report that Chd5 binds the unmodified N-terminus of H3 through its tandem plant homeodomains (PHDs). Genome-wide ChIP studies reveal preferential binding of Chd5 to loci lacking the active mark H3K4me3, and also identify novel Chd5-targets implicated in cancer. Chd5 mutations abrogating H3 binding are unable to inhibit proliferation or to transcriptionally modulate target genes, leading to tumorigenesis in vivo. Unlike wild-type Chd5, the Chd5-PHD mutants are unable to induce differentiation or to efficiently suppress growth of human neuroblastoma in vivo. Our work defines Chd5 as an N-terminally unmodified H3-binding protein and provides functional evidence that this interaction orchestrates chromatin-mediated transcriptional programs critical for tumor suppression.

characteristic: description

text: Mus musculus musculus

text: Chd5 Requires PHD-mediated Histone 3 Binding for Tumor Suppression


GenomeSS

text: Instituto de Bioinformatica e Biotecnologia

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: We have generated whole genome sequence data from a Brazilian individual. Twenty micrograms of genomic DNA purified from blood sample were sheared using HydroShear to generate fragments with an average size of 2.0 kb. DNA fragments were then processed to generate blunt ends and ligated to specific adaptors. DNA fragments were size-selected in agarose gels and subsequently circularized by ligation of a biotinylated internal adaptor. After removing non-circularized fragments, circularized DNA was treated with DNA polymerase I for nick-translation, followed by digestion with T7 exonuclease and S1 nuclease, which generated tags longer than 50 bp from the adaptor edges. Digested products were ligated with P1 and P2 adaptors, purified and amplified using a PCR protocol with 12 cycles. A total of 96 picograms of the resulting library was then used for emulsion PCR. Approximately 300 million beads from each library were deposited on one slide, followed by 50 bp mate pair sequencing on a SOLiD3 instrument, according to the manufacturer's protocol.

text: Homo sapiens

characteristic: organism

text: Human genome Brazilian individual


text: George Palade Laboratories, Department of Cellular and Molecular Medicine, UC San Diego

text: live

characteristic: INSDC status

text: Generic

text: Hela

characteristic: cell type

text: Anti-PTB mAb BB7

characteristic: clip antibody

text: Homo sapiens

text: Hela cells

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Hela

text: Anti-AGO2 mAb, clone 2E12-1C9(Abnova)

text: Homo sapiens

text: Hela cells


text: live

text: Generic

text: Hela

text: Homo sapiens

text: Hela cells

text: treated with control shRNA

characteristic: treatment


characteristic: INSDC first public

text: live

text: Generic

text: Hela

text: Homo sapiens

text: Hela cells

text: treated with PTB shRNA


text: live

text: Generic

text: Hela

text: Homo sapiens

text: Hela cells

text: Hela_PTB_3end_RNAseq_control_0h and 4h

text: treated with control shRNA and further treated with actinomycin D (2 ug/ml) for 4 hours


text: live

text: Generic

text: Hela

text: Homo sapiens

text: Hela cells

text: Hela_PTB_3end_RNAseq_knockdown_0h and 4h

text: treated with PTB shRNA and further treated with actinomycin D (2 ug/ml) for 4 hours


text: Albert Einstein College of Medicine

text: live

text: Generic

text: immortalized healthy pancreatic cells

text: healthy

characteristic: disease state

text: Homo sapiens

characteristic: sample type

text: immortalized healthy pancreatic cells

text: control mc


text: Albert Einstein College of Medicine

characteristic: INSDC last update

text: live

text: Generic

characteristic: cell line

text: low-passage patient-derived cell lines Pa04C

text: pancreatic cancer

text: Homo sapiens

text: Pancreatic cancer case 1 mc


text: Albert Einstein College of Medicine

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: low-passage patient-derived cell lines Pa03C

text: pancreatic cancer

text: Homo sapiens

text: Pancreatic cancer case 2 mc


text: Albert Einstein College of Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

text: immortalized healthy pancreatic cells

text: healthy

text: Homo sapiens

text: immortalized healthy pancreatic cells

text: control hmc


text: Albert Einstein College of Medicine

text: live

text: Generic

characteristic: SRA accession

text: pancreatic cancer

text: Homo sapiens

text: Pancreatic cancer case 1 hmc


text: Albert Einstein College of Medicine

text: live

text: Generic

text: pancreatic cancer

text: Homo sapiens

characteristic: organism

text: Pancreatic cancer case 2 hmc


text: Scott Lowe's lab, Watson School of Biological Sciences, CSHL

text: live

characteristic: INSDC status

text: Generic

text: Human Fetal Lung Fibroblast cell line

text: p53 antibody (Cat number: sc-126 DO-1) from Santa Cruz (10 ug) [mouse monoclonal antibody, Lot:F0909]

characteristic: chip antibody

text: Homo sapiens

text: IMR90 Human Fetal Lung Fibroblast cell line

text: Growing p53


text: live

text: Generic

text: Human Fetal Lung Fibroblast cell line

characteristic: cell type

text: Homo sapiens

text: Senescent/shLuc p53


text: live

text: Generic

text: Human Fetal Lung Fibroblast cell line

text: Homo sapiens

text: Senescent/shp53 p53

characteristic: title


characteristic: External Id

text: live

text: Generic

text: Human Fetal Lung Fibroblast cell line

text: Anti-mouse IgG [Santa Cruz Biotechnology, Mouse monoclonal antibody, Catalog number: Sc-2025, Lot: C1111]

text: Homo sapiens

text: Mock (IgG)


text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: Generic

text: Saccharomyces cerevisiae BY4743

characteristic: strain


text: Harvard University

characteristic: INSDC first public

text: live

text: Generic

text: Pooled (barcoded and/or indexed) ddRADseq samples of P. polionotus/P.maniculatus backcross mapping population

characteristic: description

text: BW

characteristic: label

text: Peromyscus maniculatus

text: Pooled individual ddRADseq samples for PO - BW backcross


name: 1133895870532 Streptococcus agalactiae FSL S3-654 SAG9-PE-ILI42-3 Sample

text: J. Craig Venter Institute

characteristic: INSDC last update

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae FSL S3-654

text: Streptococcus agalactiae FSL S3-654

text: FSL S3-654

text: Sample from Streptococcus agalactiae FSL S3-654


name: 1133895870528 Streptococcus agalactiae FSL S3-034 SAG19-PE-ILI4-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae FSL S3-034

text: Streptococcus agalactiae FSL S3-034

text: FSL S3-034

text: Sample from Streptococcus agalactiae FSL S3-034


name: 1133895870530 Streptococcus agalactiae FSL S3-077 SAG8-PE-ILI41-3 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae FSL S3-077

text: Streptococcus agalactiae FSL S3-077

text: FSL S3-077

text: Sample from Streptococcus agalactiae FSL S3-077


name: 1133895870526 Streptococcus agalactiae FSL S3-608 SAG17-PE-ILI45-4 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae FSL S3-608

text: Streptococcus agalactiae FSL S3-608

text: FSL S3-608

text: Sample from Streptococcus agalactiae FSL S3-608


name: 1133895870522 Streptococcus agalactiae LMG 14747 SAG136BO-PE-ILI48-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae LMG 14747

text: Streptococcus agalactiae LMG 14747

text: LMG 14747

text: Sample from Streptococcus agalactiae LMG 14747


name: 1133895870524 Streptococcus agalactiae CCUG 34230 SAG138BO-PE-ILI50-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae CCUG 34230

text: Streptococcus agalactiae CCUG 34230

text: CCUG 34230

text: Sample from Streptococcus agalactiae CCUG 34230


name: 1133895870520 Streptococcus agalactiae STIR-CD-29 SAG133-PE-ILI2-4 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae STIR-CD-29

text: Streptococcus agalactiae STIR-CD-29

text: Sample from Streptococcus agalactiae STIR-CD-29


name: 1133895870518 Streptococcus agalactiae STIR-CD-01 SAG120-PE-ILI40-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae STIR-CD-01

text: Streptococcus agalactiae STIR-CD-01

text: Sample from Streptococcus agalactiae STIR-CD-01


name: 1133895870516 Streptococcus agalactiae FSL S3-062 SAG11-PE-ILI43-3 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae FSL S3-062

text: Streptococcus agalactiae FSL S3-062

text: FSL S3-062

text: Sample from Streptococcus agalactiae FSL S3-062


name: 1133895870510 Streptococcus agalactiae MRI Z1-204 SAG117-PE-ILI37-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae MRI Z1-204

text: Streptococcus agalactiae MRI Z1-204

text: MRI Z1-204

text: Sample from Streptococcus agalactiae MRI Z1-204


name: 1133895870514 Streptococcus agalactiae MRI Z1-206 SAG119-PE-ILI39-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae MRI Z1-206

text: Streptococcus agalactiae MRI Z1-206

text: MRI Z1-206

text: Sample from Streptococcus agalactiae MRI Z1-206


name: 1133895870512 Streptococcus agalactiae MRI Z1-205 SAG118-PE-ILI38-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae MRI Z1-205

text: Streptococcus agalactiae MRI Z1-205

text: MRI Z1-205

text: Sample from Streptococcus agalactiae MRI Z1-205


name: 1133895870508 Streptococcus agalactiae MRI Z1-203 SAG116-PE-ILI36-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae MRI Z1-203

text: Streptococcus agalactiae MRI Z1-203

text: MRI Z1-203

text: Sample from Streptococcus agalactiae MRI Z1-203


name: 1133895870506 Streptococcus agalactiae MRI Z1-202 SAG115-PE-ILI35-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae MRI Z1-202

text: Streptococcus agalactiae MRI Z1-202

text: MRI Z1-202

text: Sample from Streptococcus agalactiae MRI Z1-202


name: 1133892186643 Streptococcus agalactiae GB01003 GB01003-PE-ILI64-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae GB01003

text: Streptococcus agalactiae GB01003

text: Sample from Streptococcus agalactiae GB01003


name: 1133892186645 Streptococcus agalactiae GB01004 GB01004-PE-ILI65-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae GB01004

text: Streptococcus agalactiae GB01004

text: Sample from Streptococcus agalactiae GB01004


name: 1133895870504 Streptococcus agalactiae MRI Z1-201 SAG114-PE-ILI34-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae MRI Z1-201

text: Streptococcus agalactiae MRI Z1-201

text: MRI Z1-201

text: Sample from Streptococcus agalactiae MRI Z1-201


name: 1133892186641 Streptococcus agalactiae GB00999 GB00999-PE-ILI63-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae GB00999

text: Streptococcus agalactiae GB00999

text: Sample from Streptococcus agalactiae GB00999


name: 1133892186639 Streptococcus agalactiae GB00965 GB00965-PE-ILI58-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae GB00965

text: Streptococcus agalactiae GB00965

text: Sample from Streptococcus agalactiae GB00965


name: 1133892186637 Streptococcus agalactiae GB00963 GB00963-PE-ILI57-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae GB00963

text: Streptococcus agalactiae GB00963

text: Sample from Streptococcus agalactiae GB00963


name: 1133892186635 Streptococcus agalactiae GB00957 GB00957-PE-ILI56-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae GB00957

text: Streptococcus agalactiae GB00957

text: Sample from Streptococcus agalactiae GB00957


name: 1133892186633 Streptococcus agalactiae GB00954 GB00954-PE-ILI54-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae GB00954

text: Streptococcus agalactiae GB00954

text: Sample from Streptococcus agalactiae GB00954


name: 1133892186629 Streptococcus agalactiae GB00940 GB00940-PE-ILI51-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae GB00940

text: Streptococcus agalactiae GB00940

text: Sample from Streptococcus agalactiae GB00940


name: 1133892186627 Streptococcus agalactiae GB00919 GB00919-PE-ILI90-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae GB00919

text: Streptococcus agalactiae GB00919

text: Sample from Streptococcus agalactiae GB00919


name: 1133892186625 Streptococcus agalactiae GB00900 GB00900-PE-ILI84-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae GB00900

text: Streptococcus agalactiae GB00900

text: Sample from Streptococcus agalactiae GB00900


name: 1133892186631 Streptococcus agalactiae GB00951 GB00951-PE-ILI53-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sequencing of Streptococcus agalactiae GB00951

text: Streptococcus agalactiae GB00951

text: Sample from Streptococcus agalactiae GB00951


text: Melanoma, Molecular Pathology, Spanish National Cancer Research Institute

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: Melanoma cell line

text: post infection day 3

characteristic: time point

text: SK-Mel-28 shControl rep1

text: shRNA scramble (pLKO backbone, sigma)

characteristic: treatment


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Homo sapiens

text: Melanoma cell line

text: post infection day 3

text: SK-Mel-28 shControl rep2

text: shRNA scramble (pLKO backbone, sigma)


text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Homo sapiens

characteristic: organism

text: Melanoma cell line

text: post infection day 3

text: SK-Mel-28 shControl rep3

text: shRNA scramble (pLKO backbone, sigma)


text: live

text: Generic

text: Homo sapiens

text: Melanoma cell line

text: post infection day 3

text: SK-Mel-28 shRAB7 rep1

characteristic: title

text: shRNA RAB7 (pLKO backbone, sigma, GATTGACCTCGAAA)


characteristic: External Id

text: live

text: Generic

text: Homo sapiens

text: Melanoma cell line

text: post infection day 3

text: SK-Mel-28 shRAB7 rep2


characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: Melanoma cell line

text: post infection day 3

text: SK-Mel-28 shRAB7 rep3


text: live

text: Generic

text: Homo sapiens

text: Melanoma cell line

text: post infection day 3

text: UACC-62 shControl rep1

text: shRNA scramble (pLKO backbone, sigma)


text: live

text: Generic

text: Homo sapiens

text: Melanoma cell line

text: post infection day 3

text: UACC-62 shControl rep2

text: shRNA scramble (pLKO backbone, sigma)


text: live

text: Generic

text: Homo sapiens

text: Melanoma cell line

text: post infection day 3

text: UACC-62 shControl rep3

text: shRNA scramble (pLKO backbone, sigma)


text: live

text: Generic

text: Homo sapiens

text: Melanoma cell line

text: post infection day 3

text: UACC-62 shRAB7 rep1


text: live

text: Generic

text: Homo sapiens

text: Melanoma cell line

text: post infection day 3

text: UACC-62 shRAB7 rep2


text: live

text: Generic

text: Homo sapiens

text: Melanoma cell line

text: post infection day 3

text: UACC-62 shRAB7 rep3


text: live

text: Generic

text: Homo sapiens

text: Colon cancer cell line

text: post infection day 3

text: HCT-116 shControl rep1

text: shRNA scramble (pLKO backbone, sigma)


text: live

text: Generic

text: Homo sapiens

text: Colon cancer cell line

text: post infection day 3

text: HCT-116 shControl rep2

text: shRNA scramble (pLKO backbone, sigma)


text: live

text: Generic

text: Homo sapiens

text: Colon cancer cell line

text: post infection day 3

text: HCT-116 shControl rep3

text: shRNA scramble (pLKO backbone, sigma)


text: live

text: Generic

text: Homo sapiens

text: Colon cancer cell line

text: post infection day 3

text: HCT-116 shRAB7 rep1


text: live

text: Generic

text: Homo sapiens

text: Colon cancer cell line

text: post infection day 3

text: HCT-116 shRAB7 rep2


text: live

text: Generic

text: Homo sapiens

text: Colon cancer cell line

text: post infection day 3

text: HCT-116 shRAB7 rep3


text: dbGaP

text: live

text: Generic

text: 16S rRNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: male

characteristic: host sex

text: 16s rRNA (NGS)

characteristic: molecular data type

text: human metagenome

text: Metagenomics

characteristic: study design

text: Crohn Disease

characteristic: study disease

text: Human Gut Microbiome in Crohn's Disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: 16S rRNA sample from a human male participant in the dbGaP study Human Gut Microbiome in Crohn's Disease


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 16S rRNA

text: female

text: 16s rRNA (NGS)

text: human metagenome

text: Metagenomics

text: Crohn Disease

text: Human Gut Microbiome in Crohn's Disease

text: Yes

text: 16S rRNA sample from a human female participant in the dbGaP study Human Gut Microbiome in Crohn's Disease


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Left frontal tumor

characteristic: body site

text: CRM

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Left frontal tumor of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing

characteristic: title


text: dbGaP

characteristic: INSDC first public

text: live

text: Generic

text: RNA

text: Pancreas

text: CRM

text: Yes

text: Homo sapiens

text: female

text: Case Set

characteristic: study design

text: Solitary Fibrous Tumors

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Solitary Fibrous Tumors tumor RNA sample from Pancreas of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

text: Meningeal, kidney met

text: CRM

text: Yes

text: Homo sapiens

text: female

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Meningeal, kidney met of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


text: dbGaP

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Posterior neck

characteristic: body site

text: CRM

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Posterior neck of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing

characteristic: title


text: dbGaP

characteristic: INSDC first public

text: live

text: Generic

text: RNA

text: Left cheek

text: CRM

text: Yes

text: Homo sapiens

text: male

text: Case Set

characteristic: study design

text: Solitary Fibrous Tumors

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Solitary Fibrous Tumors tumor RNA sample from Left cheek of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

text: Meningeal, brain recurrence

text: CRM

text: Yes

text: Homo sapiens

text: female

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Meningeal, brain recurrence of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


text: dbGaP

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Left flank

characteristic: body site

text: CRM

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Left flank of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing

characteristic: title


text: dbGaP

characteristic: INSDC first public

text: live

text: Generic

text: RNA

text: Meningeal origin, pancreatic met

text: CRM

text: Yes

text: Homo sapiens

text: male

text: Case Set

characteristic: study design

text: Solitary Fibrous Tumors

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Solitary Fibrous Tumors tumor RNA sample from Meningeal origin, pancreatic met of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

text: C7 paraspinal mass

text: CRM

text: Yes

text: Homo sapiens

text: male

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from C7 paraspinal mass of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


text: dbGaP

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Presacral mass

characteristic: body site

text: CRM

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Presacral mass of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing

characteristic: title


text: dbGaP

characteristic: INSDC first public

text: live

text: Generic

text: RNA

text: Right frontal tumor

text: CRM

text: Yes

text: Homo sapiens

text: female

text: Case Set

characteristic: study design

text: Solitary Fibrous Tumors

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Solitary Fibrous Tumors tumor RNA sample from Right frontal tumor of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

text: ST, pelvis

text: CRM

text: Yes

text: Homo sapiens

text: female

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from ST, pelvis of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


text: dbGaP

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Retroperitoneum

characteristic: body site

text: CRM

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Retroperitoneum of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing

characteristic: title


text: dbGaP

characteristic: INSDC first public

text: live

text: Generic

text: RNA

text: Liver

text: CRM

text: Yes

text: Homo sapiens

text: female

text: Case Set

characteristic: study design

text: Solitary Fibrous Tumors

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Solitary Fibrous Tumors tumor RNA sample from Liver of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

text: Prostate

text: CRM

text: Yes

text: Homo sapiens

text: male

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Prostate of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


text: dbGaP

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Left parapharyngeal

characteristic: body site

text: CRM

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Left parapharyngeal of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing

characteristic: title


text: dbGaP

characteristic: INSDC first public

text: live

text: Generic

text: RNA

text: Retroperitoneum

text: CRM

text: Yes

text: Homo sapiens

text: female

text: Case Set

characteristic: study design

text: Solitary Fibrous Tumors

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Solitary Fibrous Tumors tumor RNA sample from Retroperitoneum of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

text: Left lung

text: CRM

text: Yes

text: Homo sapiens

text: male

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Left lung of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


text: dbGaP

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Brain Posterior fossa

characteristic: body site

text: CRM

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Brain Posterior fossa of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing

characteristic: title


text: dbGaP

characteristic: INSDC first public

text: live

text: Generic

text: RNA

text: Pleura, recurrence

text: CRM

text: Yes

text: Homo sapiens

text: male

text: Case Set

characteristic: study design

text: Solitary Fibrous Tumors

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Solitary Fibrous Tumors tumor RNA sample from Pleura, recurrence of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

text: Right thigh

text: CRM

text: Yes

text: Homo sapiens

text: male

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Right thigh of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


text: dbGaP

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Right frontal tumor

characteristic: body site

text: CRM

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Right frontal tumor of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing

characteristic: title


text: dbGaP

characteristic: INSDC first public

text: live

text: Generic

text: RNA

text: Dura

text: CRM

text: Yes

text: Homo sapiens

text: male

text: Case Set

characteristic: study design

text: Solitary Fibrous Tumors

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Solitary Fibrous Tumors tumor RNA sample from Dura of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

text: Perirectal mass

text: CRM

text: Yes

text: Homo sapiens

text: female

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from Perirectal mass of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


text: dbGaP

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: ST, buttock

characteristic: body site

text: CRM

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Case Set

text: Solitary Fibrous Tumors

text: Yes

text: Solitary Fibrous Tumors tumor RNA sample from ST, buttock of a human female participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing

characteristic: title


text: dbGaP

characteristic: INSDC first public

text: live

text: Generic

text: RNA

text: Right lung

text: CRM

text: Yes

text: Homo sapiens

text: male

text: Case Set

characteristic: study design

text: Solitary Fibrous Tumors

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Solitary Fibrous Tumors tumor RNA sample from Right lung of a human male participant in the dbGaP study NAB2-STAT6 Gene Fusions in Solitary Fibrous Tumor by Integrative Sequencing


characteristic: External Id

text: Rockefeller University

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: exome

characteristic: description

text: isolated congenital asplenia

characteristic: disease

text: Homo sapiens

text: Generic sample from human


text: Kyushu University

characteristic: INSDC first public

text: live

text: Generic

text: adult

characteristic: dev-stage

text: Homo sapiens

characteristic: organism

text: eye

characteristic: tissue-type

text: Homo sapiens eye adult

characteristic: title


text: University of Tokyo

text: live

text: Generic

text: Peranema trichophorum

characteristic: strain

text: Peranema trichophorum K-01


text: Institute of Plant Protection, Chinese Academy of Agricultural Sciences

text: live

text: Generic

text: adult

text: wheat

characteristic: lab-host

text: Heterodera avenae

text: female

characteristic: sex

text: Heterodera avenae female adult Library

text: plasmid

text: pDNR-Lib

characteristic: vector


characteristic: External Id

text: Hokkaido Research Organization

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

text: Syumari

characteristic: cultivar

text: Vigna angularis

text: Vigna angularis cultivar Syumari genomic DNA library


text: Hokkaido Research Organization

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Vigna angularis

text: Vigna angularis cultivar Buchisyouryuukei1 genomic DNA library


text: Lieb lab, Biology, University of North Carolina at Chapel Hill

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: SDQ2357_AMA1 [Novus Biologicals, catalog# 38520002, lot# G3048-029, Animal SDQ2357]

characteristic: chip antibody

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: AMA-1 ChIP-seq in N2 mixed-stage embryos (BC085)

text: no treatment

characteristic: treatment


characteristic: INSDC first public

text: live

text: Generic

text: Caenorhabditis elegans

characteristic: organism

text: Mixed-stage embryos

text: AMA-1 ChIP-seq in N2 mixed-stage embryos (BC002)

text: no treatment


text: Lieb lab, Lewis-Sigler Institute for Integrative Genomics, Princeton University

text: live

text: Generic

text: Caenorhabditis elegans

text: Mixed-stage embryos

characteristic: strain

text: BC175 [ChIP-Seq]

characteristic: title

text: Empty vector RNAi


text: live

text: Generic

text: SDQ2358_AMA1 [Novus Biologicals, catalog# 38520002, lot# G3048-029, Animal SDQ2358]

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: BC215 [ChIP-Seq]

text: Empty vector RNAi


text: live

text: Generic

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: BC176 [ChIP-Seq]

text: NPP-13 RNAi


text: live

text: Generic

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: BC216 [ChIP-Seq]

text: NPP-13 RNAi


text: live

text: Generic

text: Wako_H3K4me3_305-34819 [Wako, catalog# 305-34819, lot# 8002]

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: BC181 [ChIP-Seq]

text: Empty vector RNAi


text: live

text: Generic

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: BC182 [ChIP-Seq]

text: NPP-13 RNAi


text: live

text: Generic

text: SDQ4154_IMB1 [not commercial]

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: IMB-1 ChIP-seq in N2 mixed-stage embryos (BC166)

text: no treatment


text: live

text: Generic

text: SDQ4154_IMB1 [not commercial]

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: IMB-1 ChIP-seq in N2 mixed-stage embryos (KI026)

text: no treatment


text: live

text: Generic

text: na (input)

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: Input-seq in N2 mixed-stage embryos (BC071)

text: no treatment


text: live

text: Generic

text: na (input)

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: Input-seq in N2 mixed-stage embryos (BC089)

text: no treatment


text: live

text: Generic

text: SDQ3897_NPP13 [Novus Biologicals, catalog# 48580002, lot# G3048-202, Animal SDQ3897]

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: NPP-13 ChIP-seq in N2 mixed-stage embryos (KI024)

text: no treatment


text: live

text: Generic

text: SY1539_NPP3 [not commercial]

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: NPP-3 ChIP-seq in N2 mixed-stage embryos (BC075)

text: no treatment


text: live

text: Generic

text: SY1540_NPP3 [not commercial]

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: NPP-3 ChIP-seq in N2 mixed-stage embryos (BC076)

text: no treatment


text: live

text: Generic

text: SY1539_NPP3 [not commercial]

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: NPP-3 ChIP-seq in N2 mixed-stage embryos (BC164)

text: no treatment


text: live

text: Generic

text: SDQ4663_RPC1 [Novus Biologicals, catalog# 53330002, lot# G3048-240A02, Animal SDQ4663]

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: Pol III RPC-1 ChIP-seq in N2 mixed-stage embryos treated with empty vector (BC177)

text: Empty vector RNAi


text: Lieb lab, Biology, University of North Carolina at Chapel Hill

text: live

text: Generic

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: Pol III RPC-1 ChIP-seq in N2 mixed-stage embryos treated with NPP-13 RNAi (BC178)

text: NPP-13 RNAi


text: live

text: Generic

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: Pol III RPC-1 ChIP-seq in N2 mixed-stage embryos treated with empty vector (BC179)

text: Empty vector RNAi


text: live

text: Generic

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: Pol III RPC-1 ChIP-seq in N2 mixed-stage embryos treated with NPP-13 RNAi (BC180)

text: NPP-13 RNAi


text: live

text: Generic

text: SDQ0839_TBP1 [Novus Biologicals, catalog# 29610002, lot# G3048-022, Animal SDQ0839]

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: TBP-1 ChIP-seq in N2 mixed-stage embryos (BC057)

text: no treatment


text: live

text: Generic

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: TBP-1 ChIP-seq in N2 mixed-stage embryos treated with empty vector (BC257)

text: Empty vector RNAi


text: live

text: Generic

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: TBP-1 ChIP-seq in N2 mixed-stage embryos treated with NPP-13 RNAi (BC258)

text: NPP-13 RNAi


text: live

text: Generic

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: TBP-1 ChIP-seq in N2 mixed-stage embryos (FW002)

text: no treatment


text: live

text: Generic

text: RiboMinus RNA (rRNA-depleted total RNA)

characteristic: isolation

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: RNA-seq in N2 mixed-stage embryos treated with empty vector (BC183)

text: Empty vector RNAi


text: live

text: Generic

text: RiboMinus RNA (rRNA-depleted total RNA)

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: RNA-seq in N2 mixed-stage embryos treated with NPP-13 RNAi (BC184)

text: NPP-13 RNAi


text: live

text: Generic

text: RiboMinus RNA (rRNA-depleted total RNA)

text: Caenorhabditis elegans

text: Mixed-stage embryos

text: RNA-seq in N2 mixed-stage embryos treated with IMB-1 RNAi (BC185)

text: IMB-1 RNAi


June 2011 GAO metagenome

text: Aalborg University

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.wastewater

text: Wastewater

characteristic: biome

characteristic: collection date

text: SBR enriched microbial communities from a Danish Wastwater treatment plant June 2011 metagenome

characteristic: description

text: MIGS/MIMS/MIMARKS.wastewater

characteristic: env package

text: Wastewater

characteristic: feature

text: Denmark: Ejby Moelle, Odense

characteristic: geo loc name

text: metagenome

characteristic: investigation type

text: SBR enriched microbial communities from a Danish Wastwater treatment plant june 2011

characteristic: isolate

text: 55.398487 N 10.420596 E

characteristic: lat lon

text: Wastewater

characteristic: material

text: wastewater metagenome

text: Analysis of SBR enriched microbial communities from a Danish Wastwater treatment plant June 2011

characteristic: project name


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: MethylRrbs

characteristic: datatype

text: DNA Methyl Reduced Rep Bisulfite Seq

characteristic: datatype description

text: HudsonAlpha

characteristic: lab

text: Myers - Hudson Alpha Institute for Biotechnology

characteristic: lab description

characteristic: labexpid

text: HudsonAlpha

characteristic: obtainedby

characteristic: obtainedby description

text: Homo sapiens

characteristic: replicate

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.

text: cancer

text: endoderm

text: human

text: M

text: MethylRrbs

text: DNA Methyl Reduced Rep Bisulfite Seq

text: HudsonAlpha

text: UW

text: Stamatoyannopoulous - University of Washington

text: Homo sapiens

characteristic: organism

characteristic: title


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT161.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Plasmodium falciparum SenT161.10.d

characteristic: collaborator sample id

text: Plasmodium falciparum SenT161.10.d

text: Genomic DNA

characteristic: sample type

text: Other

characteristic: sex

characteristic: strain

text: Plasmodium falciparum SenT161.10.d Genomic DNA sample Plasmodium falciparum SenT161.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT139.09.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT139.09.d

text: Plasmodium falciparum SenT139.09.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT139.09.d Genomic DNA sample Plasmodium falciparum SenT139.09.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT184.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT184.10.d

text: Plasmodium falciparum SenT184.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT184.10.d Genomic DNA sample Plasmodium falciparum SenT184.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT061.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT061.10.d

text: Plasmodium falciparum SenT061.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT061.10.d Genomic DNA sample Plasmodium falciparum SenT061.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum Cp803

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum Cp803

text: Plasmodium falciparum Cp803

text: Genomic DNA

text: Other

text: Plasmodium falciparum Cp803 Genomic DNA sample Plasmodium falciparum Cp803


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT111.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT111.10.d

text: Plasmodium falciparum SenT076.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT111.10.d Genomic DNA sample Plasmodium falciparum SenT111.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum 803_H2

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum 803_H2

text: Plasmodium falciparum 803_H2

text: Genomic DNA

text: Other

text: Plasmodium falciparum 803_H2 Genomic DNA sample Plasmodium falciparum 803_H2


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT049.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT049.10.d

text: Plasmodium falciparum SenT049.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT049.10.d Genomic DNA sample Plasmodium falciparum SenT049.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT016.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT016.10.d

text: Plasmodium falciparum SenT016.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT016.10.d Genomic DNA sample Plasmodium falciparum SenT016.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT065.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT065.10.d

text: Plasmodium falciparum SenT065.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT065.10.d Genomic DNA sample Plasmodium falciparum SenT065.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT135.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT135.10.d

text: Plasmodium falciparum SenT135.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT135.10.d Genomic DNA sample Plasmodium falciparum SenT135.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT126.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT126.10.d

text: Plasmodium falciparum SenT126.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT126.10.d Genomic DNA sample Plasmodium falciparum SenT126.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT162.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT162.10.d

text: Plasmodium falciparum SenT162.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT162.10.d Genomic DNA sample Plasmodium falciparum SenT162.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT131.11.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT131.11.d

text: Plasmodium falciparum SenT131.11.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT131.11.d Genomic DNA sample Plasmodium falciparum SenT131.11.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT183.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT183.10.d

text: Plasmodium falciparum SenT183.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT183.10.d Genomic DNA sample Plasmodium falciparum SenT183.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT046.09.c

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT046.09.c

text: Plasmodium falciparum SenT046.09.c

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT046.09.c Genomic DNA sample Plasmodium falciparum SenT046.09.c


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT079.09.c

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT079.09.c

text: Plasmodium falciparum SenT079.09.c

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT079.09.c Genomic DNA sample Plasmodium falciparum SenT079.09.c


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT118.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT118.10.d

text: Plasmodium falciparum SenT118.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT118.10.d Genomic DNA sample Plasmodium falciparum SenT118.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT116.09.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT116.09.d

text: Plasmodium falciparum SenT116.09.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT116.09.d Genomic DNA sample Plasmodium falciparum SenT116.09.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT047.09.c

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT047.09.c

text: Plasmodium falciparum SenT047.09.c

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT047.09.c Genomic DNA sample Plasmodium falciparum SenT047.09.c


name: 105379.7962.Genomic DNA.Plasmodium falciparum B1E4_6273_2clone2

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum B1E4_6273_2clone2

text: Plasmodium falciparum B1E4_6273_2clone2

text: Genomic DNA

text: Other

text: Plasmodium falciparum B1E4_6273_2clone2 Genomic DNA sample Plasmodium falciparum B1E4_6273_2clone2


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT092.09.c

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT092.09.c

text: Plasmodium falciparum SenT092.09.c

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT092.09.c Genomic DNA sample Plasmodium falciparum SenT092.09.c


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT077.09.c

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT077.09.c

text: Plasmodium falciparum SenT077.09.c

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT077.09.c Genomic DNA sample Plasmodium falciparum SenT077.09.c


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT155.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT155.10.d

text: Plasmodium falciparum SenT155.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT155.10.d Genomic DNA sample Plasmodium falciparum SenT155.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT147.09.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT147.09.d

text: Plasmodium falciparum SenT147.09.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT147.09.d Genomic DNA sample Plasmodium falciparum SenT147.09.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT145.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT145.10.d

text: Plasmodium falciparum SenT145.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT145.10.d Genomic DNA sample Plasmodium falciparum SenT145.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT104.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT104.10.d

text: Plasmodium falciparum SenT104.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT104.10.d Genomic DNA sample Plasmodium falciparum SenT104.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT108.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT108.10.d

text: Plasmodium falciparum SenT108.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT108.10.d Genomic DNA sample Plasmodium falciparum SenT108.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT079.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT079.10.d

text: Plasmodium falciparum SenT079.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT079.10.d Genomic DNA sample Plasmodium falciparum SenT079.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT076.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT076.10.d

text: Plasmodium falciparum SenT076.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT076.10.d Genomic DNA sample Plasmodium falciparum SenT076.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT021.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT021.10.d

text: Plasmodium falciparum SenT021.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT021.10.d Genomic DNA sample Plasmodium falciparum SenT021.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT125.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT125.10.d

text: Plasmodium falciparum SenT125.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT125.10.d Genomic DNA sample Plasmodium falciparum SenT125.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT153.09.c

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT153.09.c

text: Plasmodium falciparum SenT153.09.c

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT153.09.c Genomic DNA sample Plasmodium falciparum SenT153.09.c


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT112.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT112.10.d

text: Plasmodium falciparum SenT112.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT112.10.d Genomic DNA sample Plasmodium falciparum SenT112.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT109.09.c

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT109.09.c

text: Plasmodium falciparum SenT109.09.c

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT109.09.c Genomic DNA sample Plasmodium falciparum SenT109.09.c


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT121.09.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT121.09.d

text: Plasmodium falciparum SenT121.09.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT121.09.d Genomic DNA sample Plasmodium falciparum SenT121.09.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT015.09.c

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT015.09.c

text: Plasmodium falciparum SenT015.09.c

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT015.09.c Genomic DNA sample Plasmodium falciparum SenT015.09.c


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT117.09.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT117.09.d

text: Plasmodium falciparum SenT117.09.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT117.09.d Genomic DNA sample Plasmodium falciparum SenT117.09.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT106.09.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT106.09.d

text: Plasmodium falciparum SenT106.09.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT106.09.d Genomic DNA sample Plasmodium falciparum SenT106.09.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT131.10.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT131.10.d

text: Plasmodium falciparum SenT131.10.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT131.10.d Genomic DNA sample Plasmodium falciparum SenT131.10.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT250.08.c

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT250.08.c

text: Plasmodium falciparum SenT250.08.c

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT250.08.c Genomic DNA sample Plasmodium falciparum SenT250.08.c


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT161.09.d

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT161.09.d

text: Plasmodium falciparum SenT161.09.d

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT161.09.d Genomic DNA sample Plasmodium falciparum SenT161.09.d


name: 105379.7962.Genomic DNA.Plasmodium falciparum SenT042.09.c

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum SenT042.09.c

text: Plasmodium falciparum SenT042.09.c

text: Genomic DNA

text: Other

text: Plasmodium falciparum SenT042.09.c Genomic DNA sample Plasmodium falciparum SenT042.09.c


name: 347548.5375.Genomic DNA.Plasmodium falciparum NF54

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum NF54

text: Plasmodium falciparum NF54

text: Genomic DNA

text: Other

text: Plasmodium falciparum NF54 Genomic DNA sample Plasmodium falciparum NF54


name: PRJNA67667.Plasmodium falciparum Uganda Palo-Alto (FUP/H)

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum Palo Alto/Uganda

characteristic: sample name

text: Uganda Palo-Alto (FUP/H)

text: Generic sample from Plasmodium falciparum Palo Alto/Uganda


name: PRJNA67667.Plasmodium falciparum Tanzania (2000708)

characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Generic sample from Plasmodium falciparum Tanzania (2000708)


text: NIEHS/NIH

characteristic: INSDC center name

text: live

text: Generic

text: 24weeks at sac

characteristic: age

text: Liver

characteristic: body site

text: hepatocyte

characteristic: cell type

text: Control rat_fed NTP2000 rat chow diet for 90 days

characteristic: description

text: adult

characteristic: dev-stage

text: healthy - no disease, no liver pathology

characteristic: health-state

text: Control

characteristic: label

text: Rattus norvegicus

text: male

text: Liver

characteristic: tissue-type


text: NIEHS/NIH

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 24weeks at sac

text: Liver

text: hepatocyte

text: AFB1 rat_fed 1ppm Aflatoxin B1 in NTP2000 rat chow diet for 90 days

text: adult

text: Treated

text: Rattus norvegicus

characteristic: organism

text: male

text: Liver

characteristic: title


characteristic: External Id

text: Animal Science, South China Agricultural University

characteristic: INSDC center name

text: live

text: Generic

text: 7 weeks

characteristic: age

text: Recessive White Rock

characteristic: breed

text: Gallus gallus

text: high weight

characteristic: phenotype

text: breast muscle

text: breast muscle

characteristic: tissue

text: WRR high weight


text: live

text: Generic

text: 7 weeks

text: Recessive White Rock

text: Gallus gallus

text: low weight

text: breast muscle

text: breast muscle

text: WRR low weight


text: live

text: Generic

text: 7 weeks

text: Xinhua

text: Gallus gallus

text: high weight

text: breast muscle

text: breast muscle

text: XH high weight


text: live

text: Generic

text: 7 weeks

text: Xinhua

text: Gallus gallus

text: low weight

text: breast muscle

text: breast muscle

text: XH low weight


text: Duke University

text: live

text: Generic

text: Adult

text: Megaselia scalaris

text: male

characteristic: sex

characteristic: strain

text: Generic sample from Megaselia scalaris


text: University of Illinois at Urbana Champaign

characteristic: INSDC first public

text: live

text: Generic

text: Perfused from mice 43 days post-infection

text: in vitro 48 hours

characteristic: culture conditions

text: male

characteristic: gender

text: Schistosoma mansoni

text: Male posterior somatic tissue

text: NMRI

text: posterior somatic tissue

text: Non-irradiated Control A


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: in vitro 48 hours

text: male

text: Schistosoma mansoni

text: Male posterior somatic tissue

text: NMRI

text: posterior somatic tissue

text: Non-irradiated Control B


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: in vitro 48 hours

text: male

text: Schistosoma mansoni

text: Male posterior somatic tissue

text: NMRI

text: posterior somatic tissue

text: Non-irradiated Control C


characteristic: External Id

text: live

text: Generic

text: in vitro 48 hours

text: male

text: Schistosoma mansoni

characteristic: organism

text: Male posterior somatic tissue

text: NMRI

text: posterior somatic tissue

text: Irradiated Experimental A

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

characteristic: age

text: in vitro 48 hours

text: male

text: Schistosoma mansoni

text: Male posterior somatic tissue

text: NMRI

text: posterior somatic tissue

text: Irradiated Experimental B


text: live

text: Generic

text: in vitro 48 hours

text: male

text: Schistosoma mansoni

text: Male posterior somatic tissue

text: NMRI

text: posterior somatic tissue

characteristic: tissue

text: Irradiated Experimental C


text: UC Berkeley

text: live

text: Generic

text: Genetic background of thousands of transposon insertion lines and hundreds of isogenic deficiency lines, such as the Exelixis, Inc., and the DrosDEL collections.

characteristic: description

text: pupae

characteristic: dev-stage

characteristic: genotype

text: Drosophila melanogaster

text: w1118; iso-2; iso-3

text: Adult mixture of male and female Drosophila melanogaster isogenic w1118 flies from the Bloomington stock center


Aegilops caudata

text: University of Bristol

characteristic: INSDC first public

text: live

text: Generic

text: Aegilops markgrafii

text: Aegilops caudata