name: 1129310204194 Leptospira licerasiae serovar Varillal str. MMD0835 LS186-PE-ILI9-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira licerasiae serovar Varillal str. MMD0835

text: Generic sample from Leptospira licerasiae serovar Varillal str. MMD0835


name: 1129310204198 Leptospira interrogans serovar Canicola str. HAI0024 LS192-PE-ILI11-01 Sample

status: PUBLIC

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Total DNA isolated from Leptospira interrogans serovar Canicola str. HAI0024

characteristic: description

characteristic: organism

tag: attribute

characteristic: strain

text: Generic sample from Leptospira interrogans serovar Canicola str. HAI0024

characteristic: title


name: 1129310154574 Leptospira interrogans serovar Grippotyphosa str. 2006006971 LS35-PE-ILI1-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Grippotyphosa str. 2006006971

text: Generic sample from Leptospira interrogans serovar Grippotyphosa str. 2006006971


name: 1129310204196 Leptospira interrogans serovar Copenhageni str. HAI0156 LS191-PE-ILI10-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. HAI0156

text: Generic sample from Leptospira interrogans serovar Copenhageni str. HAI0156


name: 1129310204200 Leptospira interrogans serovar Copenhageni str. MMD1562 LS194-PE-ILI12-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. MMD1562

text: Generic sample from Leptospira interrogans serovar Copenhageni str. MMD1562


name: 1129310154576 Leptospira interrogans serovar Copenhageni str. 2006007831 Serogroup Icterohaemorrhagiae LS40-PE-ILI2-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. 2006007831 Serogroup Icterohaemorrhagiae

text: Generic sample from Leptospira interrogans serovar Copenhageni str. 2006007831


text: Massachusetts Institute of Technology

text: live

text: Generic

text: To evaluate the effect of automated collection and preservation on metatranscriptomic profiles, ESP-collected and preserved samples were compared to a replicate sample processed by peristaltic pump filtration. Water was collected in Monterey Bay (36.7173 *N, 122.1147 *W, ~9 km from MBARI station M1) at 00:13 local time on June 8, 2009 by CTD rosette at 30 m depth. 1 L was processed by ship-board ESP under normal conditions (~ 1 hr sample time). A replicate sample of 0.5 L was processed for RNA extraction using a standard peristaltic pump filtration protocol, as described previously (Frias-Lopez et al 2008). Following peristaltic pump filtration, the 0.22 µm filter was immediately submersed in 300 uL of RNA Later and stored at -80 *C, with a total time of ~30 min from seawater collection to preservation. RNA was later extracted, rRNAs removed by subtractive hybridization, and cDNA synthesized and used for pyrosequencing.

text: marine metagenome

text: MBARI station M1 ESP-processed sample and peristaltic pump control


name: 1129310204085 Leptospira interrogans serovar Copenhageni str. Fiocruz LV204 LS81-PE-ILI6-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. Fiocruz LV204

text: Fiocruz LV204

text: Generic sample from Leptospira interrogans serovar Copenhageni str. Fiocruz LV204


name: 1129310188079 Leptospira interrogans serovar Copenhageni str. 2001025091 Serogroup Icterohaemorrhagiae LS44-PE-ILI3-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. 2001025091 Serogroup Icterohaemorrhagiae

text: Generic sample from Leptospira interrogans serovar Copenhageni str. 2001025091


name: 1129310198081 Leptospira interrogans serovar Copenhageni str. Fiocruz LV192 LS79-PE-ILI4-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. Fiocruz LV192

text: Fiocruz LV192

text: Generic sample from Leptospira interrogans serovar Copenhageni str. Fiocruz LV192


name: 1129310204083 Leptospira interrogans serovar Copenhageni str. Fiocruz LV199 LS80-PE-ILI5-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. Fiocruz LV199

text: Fiocruz LV199

text: Generic sample from Leptospira interrogans serovar Copenhageni str. Fiocruz LV199


name: 1129310204093 Leptospira interrogans serovar Copenhageni str. Fiocruz LV224 LS83-PE-ILI8-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. Fiocruz LV224

text: Fiocruz LV224

text: Generic sample from Leptospira interrogans serovar Copenhageni str. Fiocruz LV224


name: 1129310204097 Leptospira interrogans serovar Copenhageni str. Fiocruz LV251 LS85-PE-ILI10-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. Fiocruz LV251

text: Fiocruz LV251

text: Generic sample from Leptospira interrogans serovar Copenhageni str. Fiocruz LV251


name: 1129310204090 Leptospira interrogans serovar Copenhageni str. Fiocruz LV212 LS82-PE-ILI7-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. Fiocruz LV212

text: Fiocruz LV212

text: Generic sample from Leptospira interrogans serovar Copenhageni str. Fiocruz LV212


name: 1129310204095 Leptospira interrogans serovar Copenhageni str. Fiocruz LV239 LS84-PE-ILI9-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. Fiocruz LV239

text: Fiocruz LV239

text: Generic sample from Leptospira interrogans serovar Copenhageni str. Fiocruz LV239


text: Broad Institute

text: live

text: Generic

characteristic: sample name

text: Generic sample from Lachnospiraceae bacterium ORNL_2UT_Ab5152_171


name: 1129310204099 Leptospira interrogans serovar Copenhageni str. Fiocruz LV130 LS87-PE-ILI11-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. Fiocruz LV130

text: Fiocruz LV130

text: Generic sample from Leptospira interrogans serovar Copenhageni str. Fiocruz LV130


name: 1129310204101 Leptospira interrogans serovar Copenhageni str. Fiocruz LV2755 LS88-PE-ILI12-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. Fiocruz LV2755

text: Fiocruz LV2755

text: Generic sample from Leptospira interrogans serovar Copenhageni str. Fiocruz LV2755


IM reseq study

text: Monsanto

text: live

text: Generic

text: Erythranthe guttata

text: Sample from Erythranthe guttata


text: Monsanto

text: live

text: Generic

text: Erythranthe guttata

text: IM320 run


text: Monsanto

text: live

text: Generic

text: Erythranthe guttata

text: M. guttatus Iron Mountain (OR, USA) inbred line IM155 resequence


text: Biochemistry and Molecular Genetics, University of Illinois at Chicago

text: live

text: Generic

text: differentiated with TPA for 96 hours

characteristic: cell differentiation protocol

characteristic: cell line

text: diffuse histiocytic lymphoma cells

characteristic: cell type

text: 2469(non-commercial, unpublished)

characteristic: chip antibody

text: Homo sapiens

text: Chromatin IP against RBP2


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: differentiated with TPA for 96 hours

text: diffuse histiocytic lymphoma cells

text: 2471(Klose et al.,Cell 128:889-900)

text: Homo sapiens

text: Chromatin IP against RBP2 Large isoform


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: differentiated with TPA for 96 hours

text: diffuse histiocytic lymphoma cells

text: Homo sapiens

text: input DNA


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: MCF7 [vehicle]

characteristic: cell differnetiation protocol

text: Cells were hormone-deprived for at least 3 days and then treated with vehicle for 45 minutes.

characteristic: cell treatment

text: breast adenocarcinoma cells

text: 2469 (non-commercial, unpublished)

text: Homo sapiens

text: Chromatin IP against RBP2


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: MCF7 [ER-treated]

text: Cells were hormone-deprived for at least 3 days and then treated with 100 nM 17Î²-estradiol (Sigma) for 45 minutes.

text: breast adenocarcinoma cells

text: 2469 (non-commercial, unpublished)

text: Homo sapiens

text: Chromatin IP against RBP2


text: live

text: Generic

text: MCF7 [vehicle]

text: breast adenocarcinoma cells

text: 4439 (Anti-JARID1B antibody, ABE239, EMD Millipore)

text: Homo sapiens

characteristic: organism

text: Chromatin IP against PLU1

characteristic: title


text: live

text: Generic

text: MCF7 [ER-treated]

text: breast adenocarcinoma cells

text: Homo sapiens

text: input DNA


text: live

text: Generic

text: HL-1 cells

text: cardiac muscle cell line

text: 1416(Benevolenskaya et al., Mol Cell 18, 623-635)

text: Mus musculus

text: Chromatin IP against RBP2

characteristic: strain


text: live

text: Generic

text: HL-1 cells

characteristic: cell line

text: cardiac muscle cell line

text: BL3844(kindly provided by Eric W. McIntush, Bethyl Laboratories, Inc.)

text: Mus musculus

text: Chromatin IP against JARID2


text: live

text: Generic

text: HL-1 cells

text: cardiac muscle cell line

characteristic: cell type

text: Mus musculus

text: input DNA


text: live

text: Generic

text: embryonic stem cells

text: 1416 (Benevolenskaya et al.,Mol Cell 18, 623-635)

characteristic: chip antibody

text: Wild-type (Kdm5a f/f)

characteristic: genotype/variation

text: Mus musculus

text: Kdm5a f/f ES cells


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: embryonic stem cells

text: Kdm5a-/- (Kdm5a KO)

text: Mus musculus

text: Kdm5a KO ES cells


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: embryonic stem cells

text: Wild-type (Kdm5a f/f)

text: Mus musculus

text: Kdm5a f/f ES cells


text: Broad Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Treponema denticola ATCC 33521

text: Treponema denticola

characteristic: sample id

text: Genomic DNA

characteristic: sample type

text: ATCC 33521

text: AL-2 ASLM ATCC 33520 ATCC 33521 ATCC 35404 H-22 H1-T MYR-T OTK SP23 SP32 SP33 SP37 SP44 US-Trep

characteristic: strains

text: Treponema denticola ATCC 33521 Genomic DNA sample Treponema denticola


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Treponema denticola AL-2

text: Treponema denticola

text: Genomic DNA

text: Treponema denticola AL-2 Genomic DNA sample Treponema denticola


PRJNA28331.Treponema denticola

text: Broad Institute

text: live

text: Generic

text: Treponema denticola SP32

characteristic: organism

text: Treponema denticola

characteristic: sample name

characteristic: strain

text: Generic sample from Treponema denticola SP32

characteristic: title


text: Broad Institute

text: live

text: Generic

text: Treponema denticola ASLM

text: Treponema denticola

text: Genomic DNA

text: ASLM

text: Treponema denticola ASLM Genomic DNA sample Treponema denticola


text: Broad Institute

text: live

text: Generic

text: Treponema denticola H1-T

text: Treponema denticola

text: Genomic DNA

text: Treponema denticola H1-T Genomic DNA sample Treponema denticola


text: Broad Institute

text: live

text: Generic

text: Treponema denticola ATCC 35404

text: Treponema denticola

text: Genomic DNA

text: ATCC 35404

text: Treponema denticola ATCC 35404 Genomic DNA sample Treponema denticola


text: Broad Institute

text: live

text: Generic

text: Treponema denticola H-22

text: Treponema denticola

text: Genomic DNA

text: Treponema denticola H-22 Genomic DNA sample Treponema denticola


text: Broad Institute

text: live

text: Generic

text: Treponema denticola OTK

text: Treponema denticola

text: Genomic DNA

text: OTK

text: Treponema denticola OTK Genomic DNA sample Treponema denticola


text: Broad Institute

text: live

text: Generic

text: Treponema denticola MYR-T

text: Treponema denticola

text: Genomic DNA

text: MYR-T

text: Treponema denticola MYR-T Genomic DNA sample Treponema denticola


text: Broad Institute

text: live

text: Generic

text: Treponema denticola SP33

text: Treponema denticola

text: Genomic DNA

text: Treponema denticola SP33 Genomic DNA sample Treponema denticola


text: Broad Institute

text: live

text: Generic

text: Treponema denticola SP23

text: Treponema denticola

text: Genomic DNA

text: Treponema denticola SP23 Genomic DNA sample Treponema denticola


text: Broad Institute

text: live

text: Generic

text: Treponema denticola SP37

text: Treponema denticola

text: Genomic DNA

text: Treponema denticola SP37 Genomic DNA sample Treponema denticola


text: Broad Institute

text: live

text: Generic

text: Treponema denticola US-Trep

text: Treponema denticola

text: Genomic DNA

text: US-Trep

text: Treponema denticola US-Trep Genomic DNA sample Treponema denticola


text: USDA-ARS

text: live

text: Generic

text: A partial genomic library constructed from PCR-RACE products that contain the O. nubialis Lep1 Helitron

characteristic: description

text: adult and larvae

characteristic: dev-stage

characteristic: lab-host

text: Ostrinia nubilalis

text: male and female

characteristic: sex

text: Ostrinia nubilalis bivoltine Z-pheromone strain

text: whole body

characteristic: tissue-type

text: ARS-CICGRU OnLep1_RACE

text: plasmid

text: pGEM-T

characteristic: vector


characteristic: External Id

text: College of Life Sciences, Central China Normal University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: The fully recovered sample was treated with 0.7 M sorbitol for 3 h and then the treated sample, together with the untreated sample (as control), were respectively subjected to RNA isolation. After cDNA synthesis, they were subjected to differential display-PCR with selective primers (modified HIP primers, Ea1-10 and Es1, 3, 8, 11 primers). The resulting distinctly regulated bands were collected from the TAE agarose gel and sequenced.

text: Nostoc flagelliforme

text: Sunitezuoqi

text: Nostoc flagelliforme str. Sunitezuoqi osmotic stress-responsive cDNA fragments


text: Kunming University of Science and Technology

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: cultivar

text: exposed to Al solution for 30min,2h,6h,12h,24h,36h respectively

text: Vanrija humicola

text: Supression Substractive Hybridization cDNA Library of Vanrija humicola

text: pGEM-T Easy Vector


text: Temasek Life Sciences Laboratory

text: live

text: Generic

text: Normalized full-length cDNA library

text: Juvenile

text: brain

characteristic: organ

text: Lates calcarifer

characteristic: organism

text: LCA_est_BRAIN Lates calcarifer normalized full-length cDNA library


text: Temasek Life Sciences Laboratory

text: live

text: Generic

text: Normalized full-length cDNA library

text: Juvenile

text: gill

text: Lates calcarifer

text: LCA_est_GILL Lates calcarifer normalized full-length cDNA library

characteristic: title


text: Temasek Life Sciences Laboratory

text: live

text: Generic

text: Normalized full-length cDNA library

characteristic: description

text: Juvenile

text: heart

text: Lates calcarifer

text: LCA_est_HEART Lates calcarifer normalized full-length cDNA library


text: Temasek Life Sciences Laboratory

text: live

text: Generic

text: Normalized full-length cDNA library

text: Juvenile

characteristic: dev-stage

text: kidney

text: Lates calcarifer

text: LCA_est_KIDNEY Lates calcarifer normalized full-length cDNA library


text: live

text: Generic

text: Normalized full-length cDNA library

text: Juvenile

text: liver

text: Lates calcarifer

text: LCA_est_LIVER Lates calcarifer normalized full-length cDNA library


text: Temasek Life Sciences Laboratory

text: live

text: Generic

text: Microsatellite enriched and normalized cDNA library

text: Juvenile

text: Pooled samples: 9 various tissues of the Asian seabass (kidney, spleen, brain, muscle, eye, liver, gill, intestine and heart).

text: Lates calcarifer

text: LCA_est_microsatellite Lates calcarifer microsatellite enriched and normalized full-length cDNA library


text: Temasek Life Sciences Laboratory

text: live

text: Generic

text: Normalized full-length cDNA library

text: Juvenile

text: muscle

text: Lates calcarifer

text: LCA_est_MUSCLE Lates calcarifer normalized full-length cDNA library


text: Temasek Life Sciences Laboratory

text: live

text: Generic

text: Normalized full-length cDNA library

text: Juvenile

text: Lates calcarifer

text: LCA_est_SMART Lates calcarifer normalized full-length cDNA library


text: Temasek Life Sciences Laboratory

text: live

text: Generic

text: Normalized full-length cDNA library

text: Juvenile

text: spleen

text: Lates calcarifer

text: LCA_est_SPLEEN Lates calcarifer normalized full-length cDNA library


text: Instituto Butantan

text: live

text: Generic

text: 5ug of mRNA from M. altirostris venom glands were primed with oligo- (dT) Not-I and reverse transcribed to cDNA using Superscript Plasmid System for cDNA Synthesis and Cloning (Invitrogen). The cDNAs were selected by size (350-600 pb and up 600 pb) in agarose gel electrophoresis, linked to Sal I adapters and directionally cloned in pSPORT-1 vector.

text: venom glands

text: Micrurus altirostris

text: SalI

text: NotI

text: venom glands

text: Coral snake Micrurus altirostris cDNA library

text: Plasmid


text: Laboratory of Gene Regulation, Ludwig Institute for Cancer Research

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: ELAND

characteristic: alignment program

characteristic: antibody catalog number

text: 1501782 and 17908001

characteristic: antibody lot numbers

text: Millipore

characteristic: antibody vendor

characteristic: cell line

text: HP1 gamma

characteristic: chip antibody

text: Wild type

characteristic: genotype/variation

text: Homo sapiens

text: human colorectal carcinoma cell line HCT116


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ELAND

text: Wild type

text: Homo sapiens


text: live

text: Generic

characteristic: NCBI submission package

text: Bowtie

text: Wild type

text: Homo sapiens

characteristic: organism

characteristic: title


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Bowtie

text: Wild type

text: Homo sapiens

text: TNF-alpha

characteristic: stimulation


text: live

text: Generic

text: Bowtie

characteristic: alignment program

text: HP1 gamma knock down

text: Homo sapiens


text: live

text: Generic

text: Bowtie

text: HP1 gamma knock down

text: Homo sapiens

text: TNF-alpha


text: live

text: Generic

text: ELAND

characteristic: antibody catalog number

text: 1501782 and 17908001

characteristic: antibody lot numbers

text: Millipore

characteristic: antibody vendor

text: HP1 gamma

text: Wild type

text: Homo sapiens

text: TNF-alpha


text: live

text: Generic

text: ELAND

characteristic: cell line

text: Wild type

characteristic: genotype/variation

text: Homo sapiens

text: TNF-alpha


characteristic: External Id

text: DBI, Plant and Soil Sciences, University of Delaware

characteristic: INSDC center name

text: live

text: Generic

characteristic: cultivar

text: Oryza glaberrima

text: Leaf

text: Leaf

characteristic: tissue

text: O. glaberrima leaf sRNA library


characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Oryza glaberrima

text: Root

text: Root

text: O. glaberrima root sRNA library


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: Oryza glaberrima

characteristic: organism

text: Panicle

text: Panicle

text: O. glaberrima panicle sRNA library

characteristic: title


text: live

text: Generic

characteristic: SRA accession

text: Oryza glaberrima

text: Leaf

text: Leaf

text: O. glaberrima leaf mRNA library


text: live

text: Generic

text: Oryza glaberrima

text: Root

text: Root

text: O. glaberrima root mRNA library


text: live

text: Generic

text: Oryza glaberrima

text: Panicle

text: Panicle

text: O. glaberrima panicle mRNA library


text: Genome Institute of Singapore

text: live

text: Generic

characteristic: cell type

text: Mus musculus

text: embryonic stem cells

text: p300 ChIP-Seq


text: Genome Institute of Singapore

text: live

text: Generic

text: Mus musculus

text: embryonic stem cells

text: CTCF ChIP-Seq


text: Genome Institute of Singapore

text: live

text: Generic

text: Mus musculus

text: embryonic stem cells

text: RNA Pol II ChIP-Seq


text: Genome Institute of Singapore

text: live

text: Generic

text: Mus musculus

text: embryonic stem cells

text: Lamin B ChIP-Seq


text: Genome Institute of Singapore

text: live

text: Generic

text: Mus musculus

text: embryonic stem cells

text: DNA Input


text: Genome Institute of Singapore

text: live

text: Generic

text: Mus musculus

text: embryonic stem cells

text: CTCF ChIA-PET IME041_42


text: Genome Institute of Singapore

text: live

text: Generic

text: Mus musculus

text: embryonic stem cells

text: CTCF ChIA-PET IME043


text: Genome Institute of Singapore

text: live

text: Generic

text: Mus musculus

text: embryonic stem cells

text: CTCF ChIA-PET IME051


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Neurospora tetrasperma FGSC 2508

characteristic: description

text: mat A

characteristic: mating type

text: Neurospora tetrasperma FGSC 2508

text: FGSC 2508

characteristic: strain

text: Generic sample from Neurospora tetrasperma FGSC 2508


characteristic: Coriell panel

characteristic: DNA id

characteristic: External Id

text: NCBI

text: live

text: Generic

text: African Caribbean in Barbados

characteristic: Population Description

text: AFR

characteristic: Super Population Code

text: African

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG01882

text: Homo sapiens

text: ACB

characteristic: population

text: trio

text: male

characteristic: sex

text: Coriell HG01882


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: African Caribbean in Barbados

text: AFR

text: African

text: Human 1000 genomes individual HG01883

text: Homo sapiens

text: ACB

text: trio

text: female

text: Coriell HG01883


text: NCBI

text: live

text: Generic

characteristic: SRA accession

text: Human 1000 genomes individual HG01888

characteristic: description

text: Homo sapiens

characteristic: organism

text: ACB

text: trio

text: male child

text: Human 1000 genomes individual HG01888

characteristic: title


characteristic: Coriell panel

characteristic: DNA id

characteristic: External Id

text: NCBI

text: live

text: Generic

text: African Caribbean in Barbados

characteristic: Population Description

text: AFR

text: African

text: Human 1000 genomes individual HG01885

text: Homo sapiens

text: ACB

text: trio

text: male

text: Coriell HG01885


text: NCBI

text: live

text: Generic

text: African Caribbean in Barbados

text: AFR

characteristic: Super Population Code

text: African

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG01956

text: Homo sapiens

text: ACB

characteristic: population

text: trio

text: female

text: Coriell HG01956


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Human 1000 genomes individual HG01884

text: Homo sapiens

text: ACB

text: trio

text: female child

characteristic: sex

text: Human 1000 genomes individual HG01884


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: African Caribbean in Barbados

text: AFR

text: African

text: Human 1000 genomes individual HG02014

text: Homo sapiens

text: ACB

text: trio

text: male

text: Coriell HG02014


text: NCBI

text: live

text: Generic

text: African Caribbean in Barbados

characteristic: SRA accession

text: AFR

text: African

text: Human 1000 genomes individual HG01886

characteristic: description

text: Homo sapiens

characteristic: organism

text: ACB

text: trio

text: female

text: Coriell HG01886

characteristic: title


characteristic: External Id

text: NCBI

text: live

text: Generic

text: Human 1000 genomes individual HG01887

text: Homo sapiens

text: ACB

text: trio

text: male child

text: Human 1000 genomes individual HG01887


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

text: African Caribbean in Barbados

characteristic: Population Description

text: AFR

characteristic: Super Population Code

text: African

text: Human 1000 genomes individual HG01890

text: Homo sapiens

text: ACB

text: trio

text: male

text: Coriell HG01890


text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: African Caribbean in Barbados

text: AFR

text: African

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG01889

text: Homo sapiens

text: ACB

characteristic: population

text: trio

text: female

text: Coriell HG01889


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Human 1000 genomes individual HG01891

text: Homo sapiens

text: ACB

text: trio

text: female child

characteristic: sex

text: Human 1000 genomes individual HG01891


text: NCBI

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: African Caribbean in Barbados

characteristic: SRA accession

text: AFR

text: African

text: Human 1000 genomes individual HG02009

text: Homo sapiens

text: ACB

text: trio

text: male

text: Coriell HG02009


characteristic: External Id

text: NCBI

text: live

text: Generic

text: African Caribbean in Barbados

text: AFR

text: African

text: Human 1000 genomes individual HG02010

characteristic: description

text: Homo sapiens

characteristic: organism

text: ACB

text: trio

text: female

text: Coriell HG02010

characteristic: title


text: NCBI

text: live

text: Generic

text: Human 1000 genomes individual HG02011

text: Homo sapiens

text: ACB

text: trio

text: male child

text: Human 1000 genomes individual HG02011


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

text: Peruvian in Lima, Peru

characteristic: Population Description

text: AMR

characteristic: Super Population Code

text: Ad Mixed American

text: Human 1000 genomes individual HG02285

characteristic: family id

text: Homo sapiens

text: PEL

text: trio

text: male

text: Coriell HG02285


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Peruvian in Lima, Peru

text: AMR

text: Ad Mixed American

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG02286

text: Homo sapiens

text: PEL

characteristic: population

text: trio

text: female

text: Coriell HG02286


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Human 1000 genomes individual HG02287

text: Homo sapiens

text: PEL

text: trio

text: female child

characteristic: sex

text: Human 1000 genomes individual HG02287


characteristic: External Id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Human 1000 genomes individual HG02302

characteristic: description

text: Homo sapiens

characteristic: organism

text: PEL

text: trio

text: male

text: Human 1000 genomes individual HG02302


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

text: Peruvian in Lima, Peru

characteristic: Population Description

text: AMR

characteristic: Super Population Code

text: Ad Mixed American

text: Human 1000 genomes individual HG02301

text: Homo sapiens

text: PEL

text: trio

text: female

text: Coriell HG02301

characteristic: title


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Human 1000 genomes individual HG02303

text: Homo sapiens

text: PEL

text: trio

text: female child

text: Human 1000 genomes individual HG02303


text: NCBI

characteristic: INSDC last update

text: live

text: Generic

text: Iberian populations in Spain

text: EUR

text: European

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG01783

text: Homo sapiens

text: IBS

characteristic: population

text: trio

text: male

text: Coriell HG01783


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Iberian populations in Spain

text: EUR

text: European

text: Human 1000 genomes individual HG01784

text: Homo sapiens

text: IBS

text: trio

text: female

characteristic: sex

text: Coriell HG01784


characteristic: External Id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Human 1000 genomes individual HG01782

characteristic: description

text: Homo sapiens

text: IBS

text: trio

text: female child

text: Human 1000 genomes individual HG01782


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

text: Iberian populations in Spain

characteristic: Population Description

text: EUR

text: European

text: Human 1000 genomes individual HG02221

text: Homo sapiens

characteristic: organism

text: IBS

text: trio

text: male

text: Coriell HG02221


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Iberian populations in Spain

text: EUR

characteristic: Super Population Code

text: European

text: Human 1000 genomes individual HG02220

text: Homo sapiens

text: IBS

text: trio

text: female

text: Coriell HG02220

characteristic: title


text: NCBI

characteristic: INSDC last update

text: live

text: Generic

text: Human 1000 genomes individual HG02222

text: Homo sapiens

text: IBS

characteristic: population

text: trio

text: female child

text: Human 1000 genomes individual HG02222


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Iberian populations in Spain

text: EUR

text: European

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG02236

text: Homo sapiens

text: IBS

text: trio

text: male

text: Coriell HG02236


characteristic: External Id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Iberian populations in Spain

text: EUR

text: European

text: Human 1000 genomes individual HG02235

text: Homo sapiens

text: IBS

text: trio

text: female

characteristic: sex

text: Coriell HG02235


text: NCBI

text: live

text: Generic

characteristic: SRA accession

text: Human 1000 genomes individual HG02237

characteristic: description

text: Homo sapiens

text: IBS

text: trio

text: female child

text: Human 1000 genomes individual HG02237


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

text: Kinh in Ho Chi Minh City, Vietnam

characteristic: Population Description

text: EAS

text: East Asian

text: Human 1000 genomes individual HG02113

text: Homo sapiens

characteristic: organism

text: KHV

text: unrel

text: female

text: Coriell HG02113


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Kinh in Ho Chi Minh City, Vietnam

text: EAS

characteristic: Super Population Code

text: East Asian

text: Human 1000 genomes individual HG02141

text: Homo sapiens

text: KHV

text: unrel

text: male

text: Coriell HG02141

characteristic: title


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Kinh in Ho Chi Minh City, Vietnam

text: EAS

text: East Asian

text: Human 1000 genomes individual HG02122

characteristic: family id

text: Homo sapiens

text: KHV

characteristic: population

text: trio

text: male

text: Coriell HG02122


characteristic: External Id

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Kinh in Ho Chi Minh City, Vietnam

text: EAS

text: East Asian

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG02121

text: Homo sapiens

text: KHV

text: trio

text: female

text: Coriell HG02121


text: NCBI

text: live

text: Generic

characteristic: SRA accession

text: Human 1000 genomes individual HG02120

characteristic: description

text: Homo sapiens

text: KHV

text: trio

text: male child

characteristic: sex

text: Human 1000 genomes individual HG02120


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: Kinh in Ho Chi Minh City, Vietnam

characteristic: Population Description

text: EAS

text: East Asian

text: Human 1000 genomes individual HG02128

text: Homo sapiens

characteristic: organism

text: KHV

text: trio

text: male

text: Coriell HG02128


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Kinh in Ho Chi Minh City, Vietnam

text: EAS

characteristic: Super Population Code

text: East Asian

text: Human 1000 genomes individual HG02127

text: Homo sapiens

text: KHV

text: trio

text: female

text: Coriell HG02127

characteristic: title


characteristic: External Id

text: NCBI

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Human 1000 genomes individual HG02126

text: Homo sapiens

text: KHV

characteristic: population

text: trio

text: female child

text: Human 1000 genomes individual HG02126


text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: Chinese Dai - Xishuangbanna, China

characteristic: SRA accession

text: EAS

text: East Asian

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG02373

text: Homo sapiens

text: CDX

text: unrel

text: male

text: Coriell HG02373


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

text: Chinese Dai - Xishuangbanna, China

text: EAS

text: East Asian

text: Human 1000 genomes individual HG02394

characteristic: description

text: Homo sapiens

text: CDX

text: unrel

text: male

characteristic: sex

text: Coriell HG02394


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Chinese Dai - Xishuangbanna, China

characteristic: Population Description

text: EAS

text: East Asian

text: Human 1000 genomes individual HG02396

text: Homo sapiens

characteristic: organism

text: CDX

text: unrel

text: male

text: Coriell HG02396


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Chinese Dai - Xishuangbanna, China

text: EAS

characteristic: Super Population Code

text: East Asian

text: Human 1000 genomes individual HG02397

text: Homo sapiens

text: CDX

text: unrel

text: male

text: Coriell HG02397

characteristic: title


E. faecalis V583

characteristic: External Id

text: Massachusetts Eye and Ear Infirmary

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Enterococcus faecalis V583

characteristic: strain

text: Enterococcus faecalis V583


text: University of Maryland Institute for Genome Sciences

text: live

text: Generic

characteristic: NCBI submission package

characteristic: cultivar

text: The BAC library was cosntructed following Tomkins et al., 2004, Plant Mol. Biol. 56:555-61

text: young leaves and buds

characteristic: organ

text: Manihot esculenta

text: Hind III

text: young leaves and buds

characteristic: tissue-type

text: MECABa

text: BAC

characteristic: vector


text: Children's Hospital of Philadelphia

characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: ZFn FIX Mouse Library


characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: gill

text: Paralvinella sulfincola cool gill, normalized

characteristic: description

text: adult

text: Worms maintained at in situ pressure, temperature range 10-30C

characteristic: in vivo conditions

text: normalized

characteristic: library description

text: normalized

characteristic: library type

text: Paralvinella sulfincola

text: Generic sample from Paralvinella sulfincola


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: body wall

text: Paralvinella sulfincola cool body, normalized

text: adult

text: Worms maintained at in situ, pressure, temperature range 10-30C

text: normalized

text: normalized

text: Paralvinella sulfincola

characteristic: organism

characteristic: title


characteristic: External Id

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: gill

text: Paralvinella sulfincola hot gill, normalized

text: adult

text: Worms maintained at in situ pressure, termperature range 45-55C

text: normalized

text: normalized

text: Paralvinella sulfincola


text: live

text: Generic

characteristic: NCBI submission package

text: body wall

text: Paralvinella sulfincola hot body, normalized

text: adult

text: Worms maintained at in situ pressure, temperature range 45-55C

text: normalized

text: normalized

text: Paralvinella sulfincola


name: 1129283156990 Toxoplasma gondii ME49 strain TOXOPLASMAGONDII-RL-01-705 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Toxoplasma gondii ME49 strain

text: Toxoplasma gondii ME49

characteristic: strain

text: Generic sample from Toxoplasma gondii ME49


name: 1129283407058 Gregarina niphandrodes GREGARINA-RL-01-832 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Gregarina niphandrodes

text: Gregarina niphandrodes

text: Sample from Gregarina niphandrodes


name: 1129283156617 Toxoplasma gondii RUB strain TOXOPLASMARUB-P3KB-01-719 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Toxoplasma gondii RUB strain

text: Toxoplasma gondii RUB

text: Generic sample from Toxoplasma gondii RUB


name: 1129283157016 Toxoplasma gondii VAND strain TOXOPLASMAVAND-P3KB-01-555 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Toxoplasma gondii VAND strain

text: Toxoplasma gondii VAND

text: Generic sample from Toxoplasma gondii VAND


name: 1129283156968 Toxoplasma gondii RUB strain TOXORUB-P8KB-01-606 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Toxoplasma gondii RUB


name: 1129283407048 Gregarina niphandrodes GREGARINA-P3KB-01-651 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Gregarina niphandrodes

text: Sample from Gregarina niphandrodes


name: 1129283407038 Toxoplasma gondii VAND strain TOXOVAND-P8KB-01-566 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Toxoplasma gondii VAND


name: 1129283407027 Toxoplasma gondii VAND strain TOXOPLASMAVAND-RL-01-890 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Toxoplasma gondii VAND


name: 1129283156957 Toxoplasma gondii RUB strain TOXOPLASMARUB-RLB-RL035-01-729 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Toxoplasma gondii RUB


name: 1129283407069 Toxoplasma gondii p89 strain TOXOPLASMAP89-P8KB-01-596 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Toxoplasma gondii p89 strain

text: Toxoplasma gondii p89

text: Generic sample from Toxoplasma gondii p89


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Whole Seedlings


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Young Leaf


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Mature Leaf


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Immature Bark


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Entire Root


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Young Bark


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Immature Leaf


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Callus


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Root Culture


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Young Flower


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Immature Fruit


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Mature Fruit


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Trichomes


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Advance Roots


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Leaf


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Roots


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Cotyledons


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Upper Stem


text: live

text: Generic

text: Camptotheca acuminata

text: Camptotheca acuminata Lower Stem


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium 8kb

text: Burkholderia cenocepacia BC7

text: Generic sample from Burkholderia cenocepacia BC7


text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler V2.5.3

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: 454 Titanium

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft70x;49

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Megasphaera sp. UPII 135-E

text: Megasphaera genomosp. UPII 135-E

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: not determined

text: Homo sapiens

characteristic: specific host

text: UPII 135-E

text: MIGS Cultured Bacterial/Archaeal sample from Megasphaera sp. UPII 135-E


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 454 Titanium 8kb

characteristic: description

text: Burkholderia multivorans CF2

characteristic: organism

characteristic: strain

text: Generic sample from Burkholderia multivorans CF2

characteristic: title


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium 8kb

text: Burkholderia multivorans ATCC BAA-247

text: ATCC BAA-247

text: Generic sample from Burkholderia multivorans ATCC BAA-247


text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler 2.5.3

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: 454 Titanium

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft57x;45

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Megasphaera lornae

text: Megasphaera genomosp. UPII 199-6

characteristic: project name

text: Reference Genome

text: not determined

text: not determined

text: Homo sapiens

text: UPII 199-6

text: MIGS Cultured Bacterial/Archaeal sample from Megasphaera sp. UPII 199-6

text: type strain of Megasphaera lornae

characteristic: type material


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Celera Assembler v. 6.1

text: terrestrial biome [ENVO:00000446]

text: not determined

text: 454 Titanium 3kb

characteristic: description

text: not determined

text: Level 2: High-Quality Draft16.75x;16

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

text: not determined

text: not determined

text: Streptococcus infantis X

characteristic: organism

text: Streptococcus infantis X

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: not determined

text: Homo sapiens

characteristic: specific host

text: X

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Streptococcus infantis X


text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: CA v6.1

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: 454 Titanium 3kb

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft11x;111

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Propionibacterium sp. 409-HC1

text: Propionibacterium sp. 409-HC1

characteristic: project name

text: Reference Genome

text: not determined

text: BEI HM-618

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Propionibacterium sp. 409-HC1

characteristic: title


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Celera Assembler v. 6.1

text: terrestrial biome [ENVO:00000446]

text: not determined

text: 454 Titanium 3kb

characteristic: description

text: Level 2: High-Quality Draft12x;81

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Propionibacterium sp. 434-HC2

characteristic: organism

text: Propionibacterium sp. 434-HC2

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-619

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Propionibacterium sp. 434-HC2


text: J. Craig Venter Institute

text: live

text: Generic

text: 454 Titanium 8kb

text: Burkholderia cenocepacia K56-2Valvano

characteristic: strain

text: Generic sample from Burkholderia cenocepacia K56-2Valvano


name: Saccaromyces bayanus var. uvarum CBS 7001 genome sequence

text: University of Colorado School of Medicine

text: live

text: Generic

text: Saccharomyces bayanus var. uvarum CBS 7001 genome sequence

text: Saccharomyces uvarum CLIB 533

text: CBS 7001


name: Saccharomyces kudriavzevii FM 1097 (IFO 1802^T-derivative) genome sequence

text: live

text: Generic

text: Saccharomyces kudriavzevii

text: FM 1097


name: Saccharomyces kudriavzevii FM 1109 (ZP 591-derivative) genome sequence

text: live

text: Generic

text: Saccharomyces kudriavzevii

text: FM 1109


name: Saccharomyces mikatae IFO 1815^T genome sequence

text: live

text: Generic

text: Saccharomyces mikatae IFO 1815

text: IFO 1815


name: 1129309314071 Leptospira interrogans serovar undetermined str. 2002000624 LS454027-BP3KB-A2NB-01-551 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. 2002000624

text: Leptospira interrogans str. 2002000624

text: Sample from Leptospira interrogans str. 2002000624


text: WTSI

text: live

text: Generic

text: Homo sapiens

characteristic: tissue-type

text: Homo sapiens brain, heart, liver, testis, lung, muscle, kidney


text: Guangxi University

text: live

text: Generic

text: adult

characteristic: dev-stage

text: Fasciola gigantica

text: whole worm

text: Fasciola gigantica whole worm adult

characteristic: title


characteristic: External Id

text: National Research Institute of Aquaculture, Fisheries Research Agency

characteristic: INSDC center name

text: live

text: Generic

characteristic: cell type

text: adult

text: Paralichthys olivaceus

text: Paralichthys olivaceus adult peripheral blood leukocyte (Thrombocytes)


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: stage 7

text: Parasteatoda tepidariorum

text: whole embryo

text: House spider embryo cDNA library stage 7


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: early stage 6

text: Parasteatoda tepidariorum

text: whole embryo

text: House spider embryo cDNA library early stage 6


text: live

text: Generic

characteristic: NCBI submission package

text: early stage 7

text: Parasteatoda tepidariorum

text: whole embryo

text: House spider embryo cDNA library early stage 7


text: live

text: Generic

text: adult

text: Paralichthys olivaceus

text: Paralichthys olivaceus adult peripheral blood leukocyte (IgM positive cells)


text: live

text: Generic

text: peritoneal macrophage

text: adult

text: Paralichthys olivaceus

text: Paralichthys olivaceus adult peritoneal macrophage


text: live

text: Generic

text: adult

text: Paralichthys olivaceus

text: Paralichthys olivaceus adult peripheral blood leukocyte (Myeloid cells)


text: Institute of Biology System (INBIOSIS), UKM

text: live

text: Generic

text: The sample taken is from lowland Ulu Yam which was grown at UKM plot. 5 ug of Poly (A)+ RNA was purified from total RNA using PolyATract mRNA Isolation Systems(USA, Promega). Then the cDNA library was constructed using the ZAP-cDNA Gigapack III Gold Cloning kit (Stratagene).

characteristic: description

text: XL1-Blue MRF

characteristic: lab-host

text: Persicaria minor

text: Leaf

text: cDNA library from leaf of Polygonum minus

text: Uni-ZAP (Stratagene)

characteristic: vector


text: Chinese Academy of Forestry

text: live

text: Generic

text: Larix kaempferi

characteristic: organism

text: root

text: Larix kaempferi root SSH Library


text: Chinese Academy of Forestry

text: live

text: Generic

text: Larix kaempferi

text: Larix kaempferi somatic embryogenesis SSH library


text: live

text: Generic

text: Larix kaempferi

text: stem

text: cDNA library of Larix kaempferi shoot stem


text: University of Illinois at Urbana-Champaign

text: live

text: Generic

text: normalized libraries

text: adult

text: muscle and brain

characteristic: organ

text: Nannospalax galili

text: Spalax muscle and brain

text: Plasmid

text: pDONR-LIB


text: University of California

text: live

text: Generic

text: Genomic DNA was used in PCR to amplify gene regions, cloned into E. coli and sequenced. Bisulfite sequencing was performed on selected genes by PCR amplification of bisulfite treated genomic DNA, cloned into E. coli and sequenced.

text: Candida albicans

text: DNA Methylation and Repression induced mutation in Candida albicans


text: Instituto de Biociencias,Universidade de Sao Paulo

text: live

text: Generic

text: Neoceratodus forsteri total genomic DNA was partially digested with the restriction endonuclease AluI, cloned into the pGEM-T Easy Vector, screened for inserts>900bp and sequenced.

text: Adult

text: Lateral body wall

text: Neoceratodus forsteri

text: Muscle

text: Neoceratodus forsteri gDNA AluI library

text: Plasmid

text: pGEM-T Easy


text: live

text: Generic

text: Neoceratodus forsteri total genomic DNA was fully digested with the restriction endonucleases PvuII/EcoRV, cloned into the pGEM-T Easy Vector, screened for inserts>900bp and sequenced.

text: Adult

text: Lateral body wall

text: Neoceratodus forsteri

text: Muscle

text: Neoceratodus forsteri gDNA PvuII/EcoRV library

text: Plasmid

text: pGEM-T Easy


name: 1129273077672 Leptospira interrogans serovar undetermined str. 2002000626 LS454029-BP3KB-A12NB-01-563 Sample

text: J. Craig Venter Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. 2002000626

text: Leptospira interrogans str. 2002000626

characteristic: strain

text: Generic sample from Leptospira interrogans str. 2002000626


name: 1129380948019 Leptospira weilii serovar undetermined str. 2006001855 LS454038-BP3KB-A1NB-01-614 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira weilii serovar undetermined str. 2006001855

text: Leptospira weilii str. 2006001855

text: Generic sample from Leptospira weilii str. 2006001855

characteristic: title


name: 1129403470309 Leptospira interrogans serovar Copenhageni str. LT2050 LS150-BP3KB-A1NB-01-562 Sample

characteristic: External Id

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Copenhageni str. LT2050

text: Generic sample from Leptospira interrogans serovar Copenhageni str. LT2050


name: 1129380948041 Leptospira santarosai serovar undetermined str. 2000030832 LS454040-BP3KB-A4NB-01-619 Sample

text: J. Craig Venter Institute

characteristic: INSDC center name

text: live

text: Generic

text: Total DNA isolated from Leptospira santarosai serovar undetermined str. 2000030832

text: Leptospira santarosai str. 2000030832

text: Generic sample from Leptospira santarosai str. 2000030832


name: 1129403591330 Leptospira interrogans serovar Grippotyphosa str. LT2186 LS151-BP3KB-A3NB-01-568 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Grippotyphosa str. LT2186

text: Generic sample from Leptospira interrogans serovar Grippotyphosa str. LT2186


name: 1129403602605 Leptospira interrogans serovar Zanoni str. LT2156 LS158-BP3KB-A2NB-01-561 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Zanoni str. LT2156

text: Generic sample from Leptospira interrogans serovar Zanoni str. LT2156


name: 1129402959011 Leptospira interrogans serovar Australis str. LT2148 LS142-BP3KB-A3NB-1-505 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Australis str. LT2148

text: Sample from Leptospira interrogans serovar Australis str. LT2148


name: 1129402959022 Leptospira interrogans serovar Djasiman str. LT1649 LS145-BP3KB-A4NB-1-477 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Djasiman str. LT1649

text: Generic sample from Leptospira interrogans serovar Djasiman str. LT1649


name: 1129295704190 Leptospira interrogans serovar Bulgarica str. Mallika LS07-BP3KB-A6NB-01-566 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Bulgarica str. Mallika

text: Mallika

text: Generic sample from Leptospira interrogans serovar Bulgarica str. Mallika


name: 1129402959034 Leptospira interrogans serovar Canicola str. LT1962 LS148-BP3KB-A5NB-1-491 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Canicola str. LT1962

text: Generic sample from Leptospira interrogans serovar Canicola str. LT1962


name: 1129273077664 Leptospira interrogans serovar Pomona str. Pomona LS14-BP3KB-A7NB-01-542 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar Pomona str. Pomona

text: Pomona

text: Generic sample from Leptospira interrogans serovar Pomona str. Pomona


name: 1129293708260 Leptospira interrogans serovar undetermined str. 2002000621 LS25-BP3KB-A8NB-01-557 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. 2002000621

text: Leptospira interrogans str. 2002000621

text: Generic sample from Leptospira interrogans str. 2002000621


name: 1129283156613 Leptospira weilii serovar undetermined str. 2006001853 LS36-BP3KB-A9NB-01-556 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira weilii serovar undetermined str. 2006001853

text: Leptospira weilii str. 2006001853

text: Generic sample from Leptospira weilii str. 2006001853


name: 1129293708333 Leptospira interrogans serovar undetermined str. 2006001854 LS37-BP3KB-A1NB-01-518 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. 2006001854

text: Leptospira interrogans str. 2006001854

text: Generic sample from Leptospira interrogans str. 2006001854


name: 1129380948030 Leptospira santarosai serovar undetermined str. 2000027870 LS39-BP3KB-A3NB-01-522 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira santarosai serovar undetermined str. 2000027870

text: Leptospira santarosai str. 2000027870

text: Generic sample from Leptospira santarosai str. 2000027870


name: 1129380949588 Leptospira noguchii serovar undetermined str. 2006001870 LS41-BP3KB-A4NB-01-501 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Leptospira noguchii serovar undetermined str. 2006001870

text: Leptospira noguchii str. 2006001870

text: Generic sample from Leptospira noguchii str. 2006001870


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Bone marrow

characteristic: body site

text: GRU-MDS

text: Acute lymphoblastic leukemia

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

characteristic: study design

text: Leukemia, T-cell

characteristic: study disease

text: Sequencing of ETP T-ALL

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Leukemia, T-cell tumor DNA sample from Bone marrow of a human male participant in the dbGaP study Sequencing of ETP T-ALL


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Bone marrow

text: GRU-MDS

text: Bone marrow

text: No

text: Homo sapiens

characteristic: organism

text: male

text: Tumor vs. Matched-Normal

text: Leukemia, T-cell

text: Sequencing of ETP T-ALL

text: Yes

text: Non-tumor DNA sample from Bone marrow of a human male participant in the dbGaP study Sequencing of ETP T-ALL

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA and RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Bone marrow

characteristic: body site

text: GRU-MDS

text: Acute lymphoblastic leukemia

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Tumor vs. Matched-Normal

text: Leukemia, T-cell

text: Sequencing of ETP T-ALL

text: Yes

text: Leukemia, T-cell tumor DNA and RNA sample from Bone marrow of a human female participant in the dbGaP study Sequencing of ETP T-ALL


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: Bone marrow

text: GRU-MDS

text: Bone marrow

text: No

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

characteristic: study design

text: Leukemia, T-cell

characteristic: study disease

text: Sequencing of ETP T-ALL

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Bone marrow of a human female participant in the dbGaP study Sequencing of ETP T-ALL


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Bone marrow

text: GRU-MDS

text: Acute lymphoblastic leukemia

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Tumor vs. Matched-Normal

text: Leukemia, T-cell

text: Sequencing of ETP T-ALL

text: Yes

text: Leukemia, T-cell tumor DNA sample from Bone marrow of a human female participant in the dbGaP study Sequencing of ETP T-ALL

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Peripheral blood

characteristic: body site

text: GRU-MDS

text: Acute lymphoblastic leukemia

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

text: Leukemia, T-cell

text: Sequencing of ETP T-ALL

text: Yes

text: Leukemia, T-cell tumor DNA sample from Peripheral blood of a human male participant in the dbGaP study Sequencing of ETP T-ALL


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Bone Marrow

text: GRU-MDS

text: Peripheral blood

text: No

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study design

text: Leukemia, T-cell

characteristic: study disease

text: Sequencing of ETP T-ALL

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Bone Marrow of a human male participant in the dbGaP study Sequencing of ETP T-ALL


name: 1129397954007 Leptospira interrogans serovar undetermined str. C10069 LS77-BP3KB-A5NB-01-551 Sample

text: J. Craig Venter Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Total DNA isolated from Leptospira interrogans serovar undetermined str. C10069

characteristic: description

text: Leptospira interrogans str. C10069

characteristic: organism

characteristic: strain

text: Generic sample from Leptospira interrogans str. C10069

characteristic: title


O. nubilalis field metagenome

characteristic: External Id

text: Universitat de Valencia

characteristic: INSDC center name

text: live

text: Generic

text: Total DNA extracted from cellular cultures of midgut microbiota of a field population of the European Corn Borer O. nubilalis

text: Ostrinia nubilalis

text: O, nubilalis field population midgut metagenome


text: Università degli Studi di Torino

text: live

text: Generic

characteristic: collection date

text: France: Cahors; truffle grounds

characteristic: country

text: of soil of nine T.melanosporum/Q. pubescens truffle-grounds collected in May 2006 in Cahors (France). We compare the two ITS regions: ITS-1 and ITS-2, of the fungal populations sampled in two areas: inside and outside T.melanosporum brul*. Two pairs of fusion primers were used: A-ITS1F (5'-CTTGGTCATTTAGAGGAAGTAA-3')/B ITS2 (5'-GCTGCGTTCTTCATCGATGC-3') for the amplification of the ITS-1 region and A-ITS3 (5'-GCATCGATGAAGAACGCAGC-3')/B-ITS4 (5'-TCCTCCGCTTATTGATATGC-3') for the amplification of the ITS-2 region (where A corresponds to 5'-GCCTCCCTCGCGCCATCAG-3' and B to 5'-GCCTTGCCAGCCCGCTCAG-3').

text: uncultured fungus

text: inside Truffle ground soil fungal community ITS1


text: Università degli Studi di Torino

text: live

text: Generic

text: France: Cahors; truffle grounds

text: uncultured fungus

text: inside Truffle ground soil fungal community ITS2


text: Università degli Studi di Torino

text: live

text: Generic

text: France: Cahors; truffle grounds

text: uncultured fungus

text: outside Truffle ground soil fungal community ITS2


text: Università degli Studi di Torino

text: live

text: Generic

text: France: Cahors; truffle grounds

text: uncultured fungus

text: outside Truffle ground soil fungal community ITS1


text: United States Department of Agriculture, Agricultural Research Service, Vegetable Crops Research Unit

text: live

text: Generic

text: Inbred line B493B

characteristic: cultivar

text: Normalized EST library was prepared using Evrogen Trimmer-Direct kit (Evrogen, Moscow, Russia) according to the manufacturer's instructions, and with the use of SMART(TM) cDNA library kit (Clontech, Palo Alto, CA). DNA was size fractionated, and this library used the 0.5-1kb fraction.

text: 10 week old plants

characteristic: dev-stage

text: Daucus carota subsp. sativus

text: 60% root tissue, 40% leaf tissue

characteristic: tissue-type

text: Daucus carota subsp. sativus B493_0.5-1kb

text: pDNR-LIB

characteristic: vector


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Inbred line B493B

text: Normalized EST library was prepared using Evrogen Trimmer-Direct kit (Evrogen, Moscow, Russia) according to the manufacturer's instructions, and with the use of SMART(TM) cDNA library kit (Clontech, Palo Alto, CA). DNA was size fractionated, and this library used the 1-2kb fraction.

text: 10 week old plants

text: Daucus carota subsp. sativus

text: 60% root tissue, 40% leaf tissue

text: Daucus carota subsp. sativus B493_1-2kb

text: pDNR-LIB


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Inbred line B493B

text: Normalized EST library was prepared using Evrogen Trimmer-Direct kit (Evrogen, Moscow, Russia) according to the manufacturer's instructions, and with the use of SMART(TM) cDNA library kit (Clontech, Palo Alto, CA). DNA was size fractionated, and this library used the 2+kb fraction.

text: 10 week old plants

text: Daucus carota subsp. sativus

text: 60% root tissue, 40% leaf tissue

text: Daucus carota subsp. sativus B493_2+kb

text: pDNR-LIB


text: Institute of Animal Husbandry and Veterinary Science

text: live

text: Generic

characteristic: NCBI submission package

text: Anas platyrhynchos

text: Duck sixth hierarchical follicle library


text: live

text: Generic

text: Anas platyrhynchos

text: Duck large white follicle library


text: UC Davis

text: live

text: Generic

text: Wonderful

text: Pomegranate fruits were collected from a pomegranate tree (Wonderful variety) at the USDA-ARS National Clonal Germplasm Repository (Davis, CA) in summer and fall of 2008. Pomegranate fruits at four different stages of development, ranging from green, beginning of ripening, not fully ripened, and fully ripened, were selected. Pomegranate peels were separated from fruits of different developmental stages by hand, pooled, and ground in liquid nitrogen using a stainless steel blender. Total RNA was extracted from pooled pomegranate peel tissue using a hexadecyltrimethyl ammonium bromide (CTAB)-based method. The cDNA library was constructed from the total RNA using the In-Fusion® SMARTerTM cDNA library construction kit (Clontech). The library plasmids were transformed into Electromax DH5a competent cells (Invitrogen) via electroporation. Transformants were plated out and hand-picked into 96 well plates.

characteristic: description

text: Mixed fruit samples -collected in summer and fall, 2008

characteristic: lab-host

text: Fruit

characteristic: organ

text: Punica granatum

text: blunt end

text: blunt end

text: Punica granatum cv. Wonderful Mixed fruit peels

text: Plasmid


text: National Institute of Fruit Tree Science, Research Team for Effects of Global Warming on Fruit Trees

text: live

text: Generic

text: Kosui

text: Pyrus pyrifolia var. culta

characteristic: organism

text: Pyrus pyrifolia var. culta library (Moriguchi T)

characteristic: title

text: culta

characteristic: variety


characteristic: External Id

text: University of Hawaii at Manoa

characteristic: INSDC center name

text: live

text: Generic

text: Virus-like particles were purified from approximately 1 cubic meter of seawater from 200 m depth in Monterey Bay (Station M1: Lat 36.75 N, Lon 122.03 W) on July 25, 2001 by filtration, differential centrifugation, and banding in a CsCl equilibrium buoyant density gradient. DNA was extracted, physically sheared, size-selected and shotgun cloned into the pCR4Blunt-TOPO vector. Clones were sequenced with the M13 forward and/or reverse priming sites on the plasmid.

text: uncultured virus

text: Monterey Bay viral metagenome from 200 m depth


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Streptococcus pneumoniae GA11304

characteristic: strain

text: Streptococcus pneumoniae GA11304


text: live

text: Generic

text: Streptococcus pneumoniae GA47439

text: Streptococcus pneumoniae GA47439


text: live

text: Generic

text: Streptococcus pneumoniae GA47360

text: Streptococcus pneumoniae GA47360


text: live

text: Generic

text: Streptococcus pneumoniae GA47373

text: Streptococcus pneumoniae GA47373


text: live

text: Generic

text: Streptococcus pneumoniae GA44511

text: Streptococcus pneumoniae GA44511


text: live

text: Generic

text: Streptococcus pneumoniae GA47976

text: Streptococcus pneumoniae GA47976


text: live

text: Generic

text: Streptococcus pneumoniae GA07643

text: Streptococcus pneumoniae GA07643


text: live

text: Generic

text: Streptococcus pneumoniae GA47388

text: Streptococcus pneumoniae GA47388


text: live

text: Generic

text: Streptococcus pneumoniae NP127

text: Streptococcus pneumoniae NP127


text: live

text: Generic

text: Streptococcus pneumoniae GA54644

text: Streptococcus pneumoniae GA54644


text: live

text: Generic

text: Streptococcus pneumoniae GA44194

text: Streptococcus pneumoniae GA44194


text: live

text: Generic

text: Streptococcus pneumoniae GA18523

text: Streptococcus pneumoniae GA18523


DBM Egg

text: Institute of applied ecology

text: live

text: Generic

text: The eggs of day 1 after oviposition were collected.

text: Plutella xylostella

text: DBM Egg transcriptome sequencing


DBM larvae

text: Institute of applied ecology

text: live

text: Generic

text: The third instar larvae were used.

text: Plutella xylostella

text: DBM larva transcriptome sequencing


DBM pupae

text: Institute of applied ecology

text: live

text: Generic

text: The pupae of day 1 or 2 after pupation were collected.

text: Plutella xylostella

text: DBM pupa transcriptome sequencing


DBM adults

text: Institute of applied ecology

text: live

text: Generic

text: Adults of day 1 after eclosion were selected randomly, regardless of sexuality.

text: Plutella xylostella

text: DBM adult transcriptome sequencing


DBM chlorpyrifos-resistant larvae

text: Institute of applied ecology

text: live

text: Generic

text: The third instar of chlorpyrifos-resistant larvae were used.

text: Plutella xylostella

text: DBM chlorpyrifos-resistant larva transcriptome sequencing


DBM fipronil-resistant larvae

text: Institute of applied ecology

text: live

text: Generic

text: The third instar of fipronil-resistant larvae were used.

text: Plutella xylostella

text: DBM fipronil-resistant larva transcriptome sequencing


text: live

text: Generic

text: Streptococcus pneumoniae 6963-05

text: Streptococcus pneumoniae 6963-05


text: live

text: Generic

text: Streptococcus pneumoniae 5787-06

text: Streptococcus pneumoniae 5787-06


text: Gene Expression Omnibus

text: live

text: Generic

text: Replicate 1

characteristic: batch

text: Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: iPS cell line clone 19.11 derived from reprogramming of foreskin fibroblasts, biological replicate 1 (r1)

text: induced pluripotent stem cell

characteristic: differentiation stage

text: iPS DF 19.11

characteristic: line

text: TeSR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Replicate 2

text: Thomson Laboratory

text: Cell Line

text: iPS cell line clone 19.11 derived from reprogramming of foreskin fibroblasts, biological replicate 2 (r2)

characteristic: description

text: induced pluripotent stem cell

text: iPS DF 19.11

text: TeSR

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Replicate 3

text: Thomson Laboratory

text: Cell Line

text: iPS cell line clone 19.11 derived from reprogramming of foreskin fibroblasts, biological replicate 3 (r3)

text: induced pluripotent stem cell

text: iPS DF 19.11

text: TeSR

text: genomic DNA

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

text: live

text: Generic

text: Replicate 1

characteristic: batch

text: Thomson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: iPS cell line clone 6.9 derived from reprogramming of foreskin fibroblasts, biological replicate 1 (r1)

text: induced pluripotent stem cell

characteristic: differentiation stage

text: iPS DF 6.9

characteristic: line

text: TeSR

text: genomic DNA

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: Replicate 1

text: Thomson Laboratory

text: Cell Line

text: H9 cell line, biological replicate 1 (r1)

text: embryonic stem cell

text: TeSR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

characteristic: passage

text: female

characteristic: sex

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Replicate 2

text: Thomson Laboratory

text: Cell Line

text: H9 cell line, biological replicate 2 (r2)

characteristic: description

text: embryonic stem cell

text: TeSR

text: genomic DNA

text: Homo sapiens

text: female

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: James Thompson Laboratory

text: Cell Line

text: Human embryonic stem cells received from the James Thompson laboratory. Cells are from the H9 line.

text: Embryonic Stem Cell

characteristic: lineage

text: mTeSER

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Between 30 and 50

text: female

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: batch

text: James Thompson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

characteristic: line

text: Embryonic Stem Cell

text: mTeSER

text: genomic DNA

text: Homo sapiens

text: female

text: Generic sample from Homo sapiens

characteristic: title


text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: iPSC 19.11

text: James Thompson Laboratory

text: Cell Line

text: Human induced pluripotent stem cell line derived from foreskin fibroblasts, isolated as described by Yu, J. et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324, 797-801 (2009).

text: As described by Yu, J. et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324, 797-801 (2009).

characteristic: differentiation method

text: Induced pluripotent stem cell

characteristic: differentiation stage

text: iPS 19.11

text: Induced pluripotent stem cell line derived from foreskin fibroblasts

text: mTeSR

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Between 30 and 40

characteristic: passage

text: male

characteristic: sex

text: Generic sample from Homo sapiens


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: iPSC 6.9

text: James Thompson Laboratory

text: Cell Line

characteristic: description

text: Induced pluripotent stem cell

text: iPS 6.9

text: mTeSR

text: genomic DNA

text: Homo sapiens

text: male

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: batch

text: James Thompson Laboratory

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: Human embryonic stem cells received from the James Thompson laboratory. Cells are from the H1 line.

text: Embryonic Stem Cell

characteristic: lineage

text: mTeSER

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: male

text: Generic sample from Homo sapiens


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC first public

text: live

text: Generic

text: Streptococcus pneumoniae GA13338

characteristic: strain

text: Streptococcus pneumoniae GA13338

characteristic: title


characteristic: External Id

text: Public Health Agency of Canada

text: live

text: Generic

text: Human alphaherpesvirus 1

text: HSV1 Strain 4-J1037


text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

text: Generic

text: Human alphaherpesvirus 1

text: HSV1 strain 2762


text: Public Health Agency of Canada

characteristic: INSDC last update

text: live

text: Generic

text: Human alphaherpesvirus 1

text: HSV1 strain 3355


text: Public Health Agency of Canada

text: live

characteristic: INSDC status

text: Generic

text: Human alphaherpesvirus 1

text: HSV1 strain 7862


text: Public Health Agency of Canada

text: live

text: Generic

characteristic: NCBI submission model

text: Human alphaherpesvirus 1

text: HSV1 strain 78326


text: Public Health Agency of Canada

text: live

text: Generic

characteristic: NCBI submission package

text: Human alphaherpesvirus 1

text: HSV1 strain 90237


text: Public Health Agency of Canada

text: live

text: Generic

text: Human alphaherpesvirus 1

text: HSV1 strain 7-HSE


text: Public Health Agency of Canada

text: live

text: Generic

text: Human alphaherpesvirus 1

text: HSV1 strain E4


text: Public Health Agency of Canada

text: live

text: Generic

text: Human alphaherpesvirus 1

text: HSV1 strain J1061


text: Kumamoto University

text: live

text: Generic

text: Embryonic stem cell

characteristic: cell type

text: ES cells vdR2-4(F1 of C57BL/6 and 129S4/SvJae)

characteristic: cell-line

text: Mus musculus

text: male

characteristic: sex

text: EGTC Gene Trap Library (Mus musculus F1(B6x129S4/SvJae))


PRV Kaplan

text: Princeton University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Suid herpesvirus 1 strain Kaplan

text: PRV Kaplan


PRV Becker

text: Princeton University

text: live

text: Generic

text: Suid herpesvirus 1 strain Becker

text: PRV Becker


PRV Bartha

text: Princeton University

text: live

text: Generic

text: Suid herpesvirus 1 strain Bartha

text: PRV Bartha


PRV Kaplan not purified (n.p.)

text: Princeton University

text: live

text: Generic

text: Suid herpesvirus 1 strain Kaplan

text: PRV Kaplan not purified (n.p.)


text: Gene Expression Omnibus

text: live

text: Generic

text: FHCRC

characteristic: biomaterial provider

text: Primary Cell

characteristic: biomaterial type

text: flow sorted CD3+ cells from cord blood

characteristic: description

characteristic: donor id

characteristic: markers

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


BioSam 146

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC first public

text: live

text: Generic

text: FHCRC

text: Primary Cell

text: CD15 Cord Blood B

text: flow sorted CD15+ cells from cord blood

text: 9-16-2009 Cord Blood B

text: male

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens

characteristic: title


BioSAli 187

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: University of Washington

text: Primary Tissue

text: Post-Mortem

characteristic: collection method

text: Primary fetal lung tissue

text: presumed normal

characteristic: disease

text: 82 Days

characteristic: donor age

text: presumed normal

characteristic: donor health status

text: UW H22772

text: female

text: genomic DNA

text: Homo sapiens

text: Lung

characteristic: tissue depot

text: Fetal Lung

characteristic: tissue type

text: Generic sample from Homo sapiens


BioSAli 186

text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: University of Washington

characteristic: biomaterial provider

text: Primary Tissue

characteristic: biomaterial type

text: Post-Mortem

text: Primary fetal brain tissue

characteristic: description

text: presumed normal

text: 120.0 Days

text: presumed normal

text: UW H22676

characteristic: donor id

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Brain

text: Fetal Brain

text: Generic sample from Homo sapiens


PRV Becker passage 10 (p10)

characteristic: External Id

text: Princeton University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Suid herpesvirus 1 strain Becker

characteristic: organism

text: PRV Becker passage 10 (p10)

characteristic: title


text: Molecular Neurobiology, MBB, Karolinska Institutet

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: embryonic stem cell-derived spheres (ES R1)

characteristic: cell type

text: Mus musculus

text: ES R1

text: START (ES) L006


characteristic: INSDC secondary accession

text: live

text: Generic

text: Mus musculus

text: ES R1

text: START (ES) L013


text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: ES R1

text: START (ES) L019


text: live

text: Generic

text: Mus musculus

text: START (Neuro2A) L023


text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: Mus musculus

text: MEF

text: START (MEF) L026


Brain H22510

text: Gene Expression Omnibus

text: live

text: Generic

text: U of Washington Kaul lab

characteristic: biomaterial provider

text: Primary Tissue

text: Fetal Brain, H22510

characteristic: donor age

text: male

characteristic: donor sex

text: genomic DNA

text: Homo sapiens

text: Brain

characteristic: tissue type

text: Generic sample from Homo sapiens


Penis, Foreskin, Fibroblast skin01

text: Gene Expression Omnibus

text: live

text: 46, XY

characteristic: KARYOTYPE

text: Generic

text: SFVAMC Dermatology

text: Primary Cell Culture

characteristic: biomaterial type

text: Fibroblast

text: Invitrogen 154CF + HKGS + .07mM Ca

characteristic: culture conditions

text: Penis, Foreskin, Fibroblast Primary Cells skin01

characteristic: description

text: Neonate

text: Disease Free

characteristic: donor health status

characteristic: donor id

text: male

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Generic sample from Homo sapiens


Penis, Foreskin, Melanocyte skin01

characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: 46, XY

text: Generic

text: SFVAMC Dermatology

text: Primary Cell Culture

text: Melanocyte

text: Invitrogen 154CF + HKGS + .07mM Ca

text: Penis, Foreskin, Melanocyte Primary Cells skin01

text: Neonate

text: Disease Free

text: male

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Generic sample from Homo sapiens

characteristic: title


Brain Germinal Matrix HuFGM01

text: Gene Expression Omnibus

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Costello Lab UCSF

characteristic: biomaterial provider

text: Primary Tissue

text: Brain, Germinal Matrix, HuFGM01

characteristic: donor age

text: Caucasian

characteristic: donor ethnicity

text: Disease Free

text: male

text: genomic DNA

text: Twin of HuFGM02

characteristic: note

text: Homo sapiens

text: Brain-Germinal Matrix

text: Generic sample from Homo sapiens


text: Department for population genetics and ecogenotoxicology, Institute for biological research Sinisa Stankovic

text: live

text: Generic

text: adults

characteristic: developmental stage

characteristic: genotype

text: retrieved from Minos-based insertional mutagenesis screen

characteristic: line source

text: Drosophila melanogaster

text: resistant line


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: adults

text: Genetics. 2004 Jun;167(2):797-813.

text: Drosophila melanogaster

text: susceptible line


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: The Eulaliopsis binata seedlings were grown in a greenhouse under controlled conditions in Huazhong Agriculture University. The inflorescence were sampled every other day from heading to seed forming period, immediately frozen in liquid nitrogen, and stored at 80degC until use. To prepare a representative sample of total RNA from the inflorescence tissues for cDNA library construction, different developmental stages of roughly equal quality of different inflorescence tissues were pooled. mRNA was isolated from total RNA using Oligotex (Qiagen, Holland) according to the manufacturer's instructions. cDNA library was constructed as described in the manual of the SMART cDNA library construction Kit (clontech, USA). Double strand cDNA were digested with Sfi I and cloned into TripIEx2 vector, the ligation mixture was mixed with MaxPlax Lambda Packaging Extracts (Epicentre, USA). The phages were transduced into E. coli BM25.8 for plasmid extraction for sequencing.

characteristic: description

text: from heading to seed forming stage

characteristic: dev-stage

text: E.coli BM25.8

characteristic: lab-host

text: Eulaliopsis binata

text: hermaphrodite

characteristic: sex

text: inflorescence

characteristic: tissue-type

text: SMART full-length cDNA library of inflorescence of Eulaliopsis binata

text: Plasmid

characteristic: vector


text: Helicos BioSciences Corporation

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA from human sample PDAC1 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

characteristic: organism

text: Sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample PDAC2 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

characteristic: INSDC center name

text: live

text: Generic

text: RNA from human sample PDAC3 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

characteristic: INSDC first public

text: live

text: Generic

text: RNA from human sample PDAC4 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

characteristic: INSDC last update

text: live

text: Generic

text: RNA from human sample PDAC5 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample PDAC6 processed using the Helicos Digital Gene Expression protocol

characteristic: description

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample PDAC7 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample PDAC8 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample PDAC9 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample PDAC10 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample PDAC11 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample PDAC12 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample PDAC13 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample PDAC14 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample PDAC15 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample FreshFrozenLCMProstateTumor2564 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample FreshFrozenLCMProstateTumor2566 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample FreshFrozenLCMProstateTumor127 processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample 6135KidneyTumorRCC processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample 6776KidneyTumorRCC processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample 3196LungCancer processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample 2831LungCancer processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens


text: Helicos BioSciences Corporation

text: live

text: Generic

text: RNA from human sample QUB105OvarianCancer processed using the Helicos Digital Gene Expression protocol

text: Homo sapiens

text: Sample from Homo sapiens