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characteristic: biosamplemodel

characteristic: culture collection

text: Human 1000 genomes individual HG03963

characteristic: description

text: Homo sapiens

text: ITU

text: male

text: Coriell HG03963

text: unrel


text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

text: Human 1000 genomes individual HG03964

text: Homo sapiens

characteristic: organism

text: ITU

text: female

text: Human 1000 genomes individual HG03964

text: unrel


characteristic: Coriell panel

characteristic: DNA id

characteristic: External Id

text: NCBI

text: live

text: Generic

text: Indian Telugu in the U.K.

characteristic: Population Description

text: SAS

text: South Asian

text: Generic

text: Human 1000 genomes individual HG03960

characteristic: family id

text: Homo sapiens

text: ITU

characteristic: population

text: male

characteristic: sex

text: Coriell HG03960

text: unrel


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Indian Telugu in the U.K.

text: SAS

characteristic: Super Population Code

text: South Asian

characteristic: Super Population Description

text: Generic

text: Human 1000 genomes individual HG03968

text: Homo sapiens

text: ITU

text: female

text: Coriell HG03968

characteristic: title

text: unrel

characteristic: type


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Indian Telugu in the U.K.

text: SAS

text: South Asian

text: Generic

characteristic: biosamplemodel

characteristic: culture collection

text: Human 1000 genomes individual HG03720

characteristic: description

text: Homo sapiens

text: ITU

text: male

text: Coriell HG03720

text: unrel


characteristic: Coriell panel

characteristic: DNA id

characteristic: External Id

text: NCBI

text: live

text: Generic

text: Indian Telugu in the U.K.

characteristic: Population Description

characteristic: SRA accession

text: SAS

text: South Asian

text: Generic

text: Human 1000 genomes individual HG04019

characteristic: family id

text: Homo sapiens

characteristic: organism

text: ITU

text: male

text: Coriell HG04019

text: unrel


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Indian Telugu in the U.K.

text: SAS

characteristic: Super Population Code

text: South Asian

characteristic: Super Population Description

text: Generic

text: Human 1000 genomes individual HG04025

text: Homo sapiens

text: ITU

characteristic: population

text: female

characteristic: sex

text: Coriell HG04025

text: unrel


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Indian Telugu in the U.K.

text: SAS

text: South Asian

text: Generic

characteristic: biosamplemodel

text: Human 1000 genomes individual HG04020

text: Homo sapiens

text: ITU

text: male

text: Coriell HG04020

characteristic: title

text: unrel

characteristic: type


characteristic: Coriell panel

characteristic: DNA id

characteristic: External Id

text: NCBI

text: live

text: Generic

text: Indian Telugu in the U.K.

characteristic: Population Description

characteristic: SRA accession

text: SAS

text: South Asian

text: Generic

characteristic: culture collection

text: Human 1000 genomes individual HG04014

characteristic: description

text: Homo sapiens

text: ITU

text: female

text: Coriell HG04014

text: unrel


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Indian Telugu in the U.K.

text: SAS

characteristic: Super Population Code

text: South Asian

characteristic: Super Population Description

text: Generic

text: Human 1000 genomes individual HG04015

characteristic: family id

text: Homo sapiens

characteristic: organism

text: ITU

text: male

text: Coriell HG04015

text: unrel


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Indian Telugu in the U.K.

text: SAS

text: South Asian

text: Generic

characteristic: biosamplemodel

text: Human 1000 genomes individual HG04022

text: Homo sapiens

text: ITU

characteristic: population

text: male

characteristic: sex

text: Coriell HG04022

text: unrel


characteristic: Coriell panel

characteristic: DNA id

characteristic: External Id

text: NCBI

text: live

text: Generic

text: Indian Telugu in the U.K.

characteristic: Population Description

characteristic: SRA accession

text: SAS

text: South Asian

text: Generic

text: Human 1000 genomes individual HG04063

text: Homo sapiens

text: ITU

text: female

text: Coriell HG04063

characteristic: title

text: unrel

characteristic: type


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Indian Telugu in the U.K.

text: SAS

characteristic: Super Population Code

text: South Asian

characteristic: Super Population Description

text: Generic

characteristic: culture collection

text: Human 1000 genomes individual HG04093

characteristic: description

text: Homo sapiens

text: ITU

text: male

text: Coriell HG04093

text: unrel


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Indian Telugu in the U.K.

text: SAS

text: South Asian

text: Generic

characteristic: biosamplemodel

text: Human 1000 genomes individual HG04118

characteristic: family id

text: Homo sapiens

characteristic: organism

text: ITU

text: female

text: Coriell HG04118

text: unrel


AB/P1 set 1

characteristic: External Id

text: Technion

text: live

text: Generic

characteristic: SRA accession

text: C. elegans CEL-Seq data from one IVT containing three matched pairs of AB and P1 blastomeres (a total of six blastomeres from three embryos), plus one P0 zygote.

text: Caenorhabditis elegans

text: C. elegans AB and P1 blastomeres, set 1


name: 1133165704014 Sally gDNA, muscle Salmon8kb-6_GCCAAT_UIO Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Sample from Salmo salar

characteristic: title


text: Fred Hutchinson Cancer Research Center

characteristic: INSDC center name

text: live

text: Generic

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (wt20) was created from 20 pooled wildtype fish that were the siblings of hoxb1b(b1219) mutants (hox20).

text: Danio rerio


text: NTHU

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: Brain

characteristic: source tissue

text: Brain

text: embryonal tumor

characteristic: tissue

text: embryonal tumor A14


text: NTHU

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: embryonal tumor

text: embryonal tumor A15


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: embryonal tumor

text: embryonal tumor A16


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: embryonal tumor

text: embryonal tumor A17


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: germ cell tumor

text: germ cell tumor A18


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: germ cell tumor

text: germ cell tumor A19


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: germ cell tumor

text: germ cell tumor A20


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: germ cell tumor

text: germ cell tumor A21


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: germ cell tumor

text: germ cell tumor A22


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A02


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A56


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A57


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A58


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A59


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A60


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A61


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A50


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A51


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A52


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A53


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A54


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A55


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A01


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A03


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: embryonal tumor

text: embryonal tumor A13


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: embryonal tumor

text: embryonal tumor A07


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: embryonal tumor

text: embryonal tumor A06


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: glioma

text: glioma A08


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: germ cell tumor

text: germ cell tumor A09


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: germ cell tumor

text: germ cell tumor A12


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: embryonal tumor

text: embryonal tumor A05


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: germ cell tumor

text: germ cell tumor A10


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: germ cell tumor

text: germ cell tumor A11


text: NTHU

text: live

text: Generic

text: Homo sapiens

text: Brain

text: Brain

text: embryonal tumor

text: embryonal tumor A04


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Generic

text: human gut metagenome

characteristic: patient number

text: DNA

characteristic: template

text: human gut metagenome 16-DNA


text: Fred Hutchinson Cancer Research Center

characteristic: INSDC secondary accession

text: live

text: Generic

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (wt40) was created from 40 pooled wildtype fish that were the siblings of hoxb1b(b1219) mutants (hox40).

characteristic: description

text: Danio rerio


text: Fred Hutchinson Cancer Research Center

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (wt80) was created from 80 pooled wildtype fish that were the siblings of hoxb1b(b1219) mutants (hox80).

text: Danio rerio


text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

characteristic: NCBI submission package

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (hox20) was created from 20 pooled hoxb1b(b1219) fish that were the siblings of wt20.

text: Danio rerio


name: 1133157704123 Sally gDNA, muscle Salmon8kb-4_TGACCA_UIO Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Sample from Salmo salar


text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (hox40) was created from 40 pooled hoxb1b(b1219) fish that were the siblings of wt40.

text: Danio rerio


text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (hox80) was created from 80 pooled hoxb1b(b1219) fish that were the siblings of wt80.

text: Danio rerio


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

characteristic: cell line

text: late embryonic stage

characteristic: developmental stage

text: Drosophila melanogaster

text: male

characteristic: sex

text: Sg4 cell small ncRNA RNA-Seq

text: embryo-derived cell-line

text: Sg4 V133/BS34 (Celniker/RNA:199) rep1 extraction1_seq1 aliquote 1


characteristic: External Id

text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

characteristic: SRA accession

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (kroxWT) was created from 30 pooled wildtype fish that were the siblings of egr2b(fh227) mutants (kroxMUT).

text: Danio rerio

characteristic: organism


text: Fred Hutchinson Cancer Research Center

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (kroxMUT) was created from 30 pooled egr2b(fh227) fish that were the siblings kroxWT.

text: Danio rerio

characteristic: title


name: 1133157704125 Sally gDNA, muscle Salmon8kb-2_CGATGT_UIO Sample

text: J. Craig Venter Institute

characteristic: INSDC last update

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Sample from Salmo salar


text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (vanglWT) was created from 37 pooled wildtype fish that were the siblings vangl2(m209) mutants (vanglMUT).

text: Danio rerio


text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (vanglMUT) was created from 37 pooled vangl2(m209) fish that were the siblings of vanglWT.

text: Danio rerio


text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (nhslWT) was created from 8 pooled wildtype fish that were the siblings nhsl1b(fh131) mutants (nhslMUT).

text: Danio rerio


text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

text: RNA-seq data from Miller et al (submitted). Data was generated in order to map ENU induced mutations in zebrafish. This data (nhslMUT) was created from 8 pooled nhsl1b(fh131) fish that were the siblings of nhslWT.

text: Danio rerio


text: live

text: Generic

text: third instar larval stage

text: y v f mal

characteristic: genotype

text: Drosophila melanogaster

text: ML-DmBG1-c1 cell small ncRNA RNA-Seq

text: CNS-derived cell-line

characteristic: tissue

text: ML-DmBG1-c1 V129/BS177 (Celniker/RNA:117) rep2 extraction2_seq1 aliquote 1


name: 1133157704133 Sally gDNA, muscle Salmon20kb-12_CTTGTA_UIO Sample

text: J. Craig Venter Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Sample from Salmo salar


text: Stanford University

text: live

text: Generic

text: Laboratory-made interspecific hybrid created by mating Saccharomyces cerevisiae (S288c-based strain) X Saccharomyces uvarum (CBS7001-based strain).

characteristic: description

text: Saccharomyces cerevisiae S288C


Male

text: Virgina Tech

text: live

characteristic: INSDC status

text: Generic

text: Anopheles gambiae

text: male

characteristic: strain

text: General Sample for Anopheles gambiae


text: UCSF

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

text: Fecal metagenome of a domestic rabbit with gastroenteritis

text: gastroenteritis

characteristic: disease

text: USA: Knoxville, TN

characteristic: geo loc name

text: feces

characteristic: isolation-source

characteristic: label

text: gut metagenome

text: gastroenteritis

characteristic: phenotype

text: feces

characteristic: sample-type

text: Oryctolagus cuniculus

characteristic: specific host


Female

characteristic: External Id

text: Virgina Tech

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: Anopheles gambiae

characteristic: organism

text: female

characteristic: sex

text: General Sample for Anopheles gambiae

characteristic: title


All 68 Samples together

text: INDEAR

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Soil samples were collected between June and August 2010 at two different locations in Argentine Pampas. Sampling was done in production fields and in experimental plots. Production plots were sampled in three different farms located in the Rolling Pampas: La Estrella, La Negrita and Criadero Klein. Rolling Pampas Soils are classified as Typic Argiudolls (USDA 1975) and mean annual precipitation and temperature are 1002 mm and 16.8 ºC. Production soils were under agricultural management for at least one century, with a mixed rotation of pastures and annual grain crops during the first decades and only grain crops for the last 30 years. Soils were managed under no-till for the last 10-15 years. The last crop rotation was wheat-soybean. Nitrogen fertilization was performed. Samples were collected a month after soybean harvest on June 2010. Soil samples were also collected nearby the farmers’ houses where no land use has been recorded in the last 30 years except from grass mowing. Parks around farmers' houses are usually considered as undisturbed (i.e. no land use) environments in Argentine Pampas (Vazquez et al. 1990). Soils under no land use were covered with grass and other herbaceous (non-woody) plants common in the region such as Cirsium sp, Trifolium sp, Micropsis sp, Festuca sp, Dichondra sp, Cyperus sp and Taraxacum officinale. Soil cores were taken with an auger from the upper 20 cm soil layer, from 20 randomly selected locations within an area of ~500 m2 in each plot. Cores were then pooled together. The second sampling location was a 34 year- crop rotation experiment located in Balcarce in the Southern Pampas. Soils in Balcarce are classified as a complex of Typic Argiudolls and Petrocalcic Paleudols and mean annual precipitation and temperatures are 875 mm and 13.8 ºC. The experiment was carried out as a randomized complete block design with a split-plot treatment arrangement, three replicates, and 10 by 35 m experimental units. Treatments assigned to main plots were referred to as no-till or conventional tillage (under mouldboard plough). Rotations have included pastures and grain crops during the last 16 years. Nitrogen fertilization was performed (90 kg N ha-1). Last rotation before sampling was corn-soybean. Samples were collected from all treatments and replicates on August 2010, a month after soybean harvest. Soil samples were also taken in triplicate nearby the farm houses where no land use has been recorded in the last 30 years except from grass mowing. This area was covered with grass and other herbaceous (non-woody) plants common in the region. Samples were collected as in Rolling Pampa. Composite samples were immediately sent to the lab where they were air dried for 2/3 days and sieved through 1 mm mesh to thoroughly homogenize, break aggregates and remove roots and plant detritus. Samples were then stored at -80 °C. DNA was isolated from 10 g of soil using the PowerMaxSoil DNA Isolation Kit following the manufacturer’s instructions (MO BIO Laboratories, Inc, CA, USA). Technical replicates were defined by performing up to 4 independent extractions per sample. A total of 42 DNA samples were used. The V4 hyper variable region of the 16s rRNA gene was amplified in duplicate PCR reactions using 520F and 802R bacterial universal primers. Amplicons were pooled and equimolar concentrations pyrosequenced at INDEAR (Argentina). on a Roche FLX 454 pyrosequencer running the Titanium chemistry

characteristic: description

text: Bacteria

text: Argentinean Pampa soil 16S pyrotags


name: 1133157704135 Sally gDNA, muscle Salmon20kb-14_AGTTCC_UIO Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Sample from Salmo salar


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: human gut metagenome

characteristic: patient number

text: RNA

characteristic: template

text: human gut metagenome 16-RNA


Rabbit astrovirus sample

text: UCSF

text: live

text: Generic

text: This is a fecal sample from a domestic rabbit suffering from gastroenteritis.

text: Oryctolagus cuniculus

text: Fecal metagenome of a rabbit with gastroenteritis


name: 1133157704137 Sally gDNA, muscle Salmon20kb-7_CAGATC_UIO Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Sample from Salmo salar


name: 1133161704027 Sally gDNA, muscle Salmon20kb-19_GTGAAA_UIO Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Sample from Salmo salar


name: 1133179704021 Sally gDNA, muscle Salmon20kb-15_ATGTCA_UIO Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

text: Salmo salar

text: Sample from Salmo salar


text: live

text: Generic

characteristic: cell line

text: third instar larval stage

characteristic: developmental stage

text: y v f mal

characteristic: genotype

text: Drosophila melanogaster

text: ML-DmD9 cell small ncRNA RNA-Seq

text: dorsal mesothoracic disc

characteristic: tissue

text: ML-DmD9 V125/BS101 (Celniker/RNA:71) rep1 extraction1_seq1 aliquote 1


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: late embryonic stage

text: Drosophila melanogaster

text: male

text: S2-DRSC cell small ncRNA RNA-Seq

text: embryo-derived cell-line

text: S2-DRSC V145/BS10 (Celniker/RNA:13) rep1 extraction1_seq1 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

characteristic: SRA accession

text: third instar larval stage

text: y v f mal

text: Drosophila melanogaster

characteristic: organism

text: ML-DmBG3-c2 cell small ncRNA RNA-Seq

text: CNS-derived cell-line

text: ML-DmBG3-c2 V130/BS180 (Celniker/RNA:123) rep2 extraction2_seq1 aliquote 1

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 2-DNA


text: live

text: Generic

characteristic: NCBI submission package

text: Generic

characteristic: biosamplemodel

text: human gut metagenome

text: DNA

text: human gut metagenome 42-DNA


text: live

text: Generic

text: third instar larval stage

text: y v f mal

text: Drosophila melanogaster

text: ML-DmD32 cell small ncRNA RNA-Seq

text: dorsal mesothoracic disc

text: ML-DmD32 V022/V132/BS25 (Celniker/RNA:163) rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: Generic

text: human gut metagenome

characteristic: patient number

text: RNA

characteristic: template

text: human gut metagenome 67-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 84-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 94-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 56-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 64-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 26-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 56-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 44-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 38-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 84-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 96-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 50-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 52-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 97-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 77-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 48-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 26-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 31-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 38-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 41-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 68-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 77-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 52-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 64-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 67-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 68-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 96-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 2-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 50-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 44-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 33-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 33-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 34-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 76-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 48-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 49-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 34-DNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 76-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 44-ITS


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 64-ITS


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 97-ITS


text: live

text: Generic

text: Generic

text: human gut metagenome

text: RNA

text: human gut metagenome 97-RNA


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 96-ITS


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 38-ITS


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 77-ITS


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 50-ITS


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 15-ITS


text: live

text: Generic

text: Generic

text: human gut metagenome

text: DNA

text: human gut metagenome 33-ITS


name: 1133157704131 Sally gDNA, muscle Salmon20kb-13_AGTCAA_UIO Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Sally muscle

characteristic: description

text: Salmo salar

text: Sample from Salmo salar


text: Androgen Receptor Laboratory, Inst. of Biomedicine/Physiology, University of Helsinki

text: live

text: Generic

text: LNCaP-1F5 cells

characteristic: cell line

text: Prostate epithelial cells derived from metastatic prostate carcinoma, genetically engineered to express rat glucocorticoid receptor (Cleutjens et al., 1997).

characteristic: cell type

text: AR (Kang et al. 2004; Sahu et al. 2011)

characteristic: chip antibody

text: Homo sapiens

characteristic: passages

text: LNCaP-1F5 cells

text: AR CPA rep1

text: 1000 nM CPA

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: LNCaP-1F5 cells

text: AR (Kang et al. 2004; Sahu et al. 2011)

text: Homo sapiens

text: LNCaP-1F5 cells

text: AR CPA rep2

text: 1000 nM CPA


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: LNCaP-1F5 cells

text: AR (Kang et al. 2004; Sahu et al. 2011)

text: Homo sapiens

characteristic: organism

text: LNCaP-1F5 cells

text: AR RU486 rep1

characteristic: title

text: 1000 nM RU486


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: LNCaP-1F5 cells

text: AR (Kang et al. 2004; Sahu et al. 2011)

text: Homo sapiens

text: LNCaP-1F5 cells

text: AR RU486 rep 2

text: 1000 nM RU486


text: live

text: Generic

text: LNCaP-1F5 cells

text: AR (Kang et al. 2004; Sahu et al. 2011)

text: Homo sapiens

text: LNCaP-1F5 cells

text: AR Vehicle

text: Vehicle


text: live

text: Generic

text: LNCaP-1F5 cells

text: AR (Kang et al. 2004; Sahu et al. 2011)

text: Homo sapiens

text: LNCaP-1F5 cells

text: AR Bica

text: 1000 nM Bica


text: live

text: Generic

text: LNCaP-1F5 cells

text: RNA Pol II (sc-899x, SantaCruz)

text: Santa Cruz

characteristic: chip antibody manufacturer

text: Homo sapiens

text: LNCaP-1F5 cells

text: RP DHT

text: 100 nM DHT


text: live

text: Generic

text: LNCaP-1F5 cells

characteristic: cell line

text: RNA Pol II (sc-899x, SantaCruz)

text: Santa Cruz

text: Homo sapiens

text: LNCaP-1F5 cells

text: RP Dex

text: 100 nM DEX


text: live

text: Generic

text: LNCaP-1F5 cells

characteristic: cell type

text: GR (Widen et al. 2000)

text: Homo sapiens

text: LNCaP-1F5 cells

text: GR Dex rep1

text: 100 nM DEX


text: live

text: Generic

text: LNCaP-1F5 cells

text: mIgG (sc-2025, Santa Cruz)

characteristic: chip antibody

text: Santa Cruz

text: Homo sapiens

text: LNCaP-1F5 cells

text: mIgG

text: 100 nM DEX


text: live

text: Generic

text: VCaP

text: Prostate epithelial cells derived from vertebral bone metastasis from patient with hormone refractory cancer.

text: AR (Kang et al. 2004; Sahu et al. 2011)

text: Homo sapiens

characteristic: passages

text: VCaP

text: AR DHT rep1

text: 100 nM DHT


text: live

text: Generic

text: VCaP

text: AR (Kang et al. 2004; Sahu et al. 2011)

text: Homo sapiens

text: VCaP

text: AR DHT rep2

text: 100 nM DHT

characteristic: treatment


characteristic: External Id

text: live

text: Generic

text: VCaP

text: rIgG (sc-2027, SantaCruz)

text: Santa Cruz

text: Homo sapiens

text: VCaP

text: VCaP rIgG

text: 100 nM DHT


characteristic: INSDC center name

text: live

text: Generic

text: VCaP

text: GR (BuGr2, Millipore and Mab-010-050, Diagenode)

text: Millipore and Diagenode

text: Homo sapiens

text: VCaP

text: GR Dex

text: 100 nM DEX


characteristic: INSDC first public

text: live

text: Generic

text: VCaP

text: mIgG (sc-2025, Santa Cruz)

text: Santa Cruz

text: Homo sapiens

text: VCaP

text: VCaP mIgG

text: 100 nM DEX


characteristic: INSDC last update

text: live

text: Generic

text: LNCaP-1F5 cells

text: AR (Kang et al. 2004; Sahu et al. 2011)

text: Homo sapiens

text: LNCaP-1F5 cells

text: AR DHT 2011

text: 100 nM DHT


characteristic: INSDC secondary accession

text: live

text: Generic

text: LNCaP-1F5 cells

text: AR (Kang et al. 2004; Sahu et al. 2011)

text: Homo sapiens

text: LNCaP-1F5 cells

text: AR DHT+Dex 2011

text: 100 nM DHT+Dex


text: live

text: Generic

characteristic: SRA accession

text: LNCaP-1F5 cells

text: GR (Widen et al. 2000)

text: Homo sapiens

text: LNCaP-1F5 cells

text: GR Dex 2011

text: 100 nM Dex


text: live

text: Generic

text: LNCaP-1F5 cells

text: GR (Widen et al. 2000)

text: Homo sapiens

characteristic: organism

text: LNCaP-1F5 cells

text: GR DHT+Dex 2011

text: 100 nM DHT+Dex


text: live

text: Generic

text: late embryonic stage

characteristic: developmental stage

text: mh

characteristic: genotype

text: Drosophila melanogaster

text: 1182-4H cell small ncRNA RNA-Seq

text: embryo-derived cell-line

characteristic: tissue

text: 1182-4H V147/BS22 (Celniker/RNA:37) rep2 extraction2_seq1 aliquote 1

characteristic: title


text: KRIBB

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Vital

characteristic: cultivars

text: Rosa hybrid cultivar

text: flower

text: flower

text: Vital sRNA


text: KRIBB

text: live

text: Generic

text: Marussia

text: Rosa hybrid cultivar

text: flower

text: flower

text: Marussia sRNA


text: KRIBB

text: live

text: Generic

text: Simpas

text: Rosa hybrid cultivar

text: flower

text: flower

text: Simpas sRNA


text: KRIBB

text: live

text: Generic

text: Haedang

text: Rosa rugosa

text: flower

text: flower

text: Haedang sRNA


text: Dr. Vivian G. Cheung Lab, Pediatrics&Genetics, HHMI/University of Michigan

text: live

text: Generic

text: global run-on

characteristic: assay

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12004

characteristic: biomaterial provider

text: B-cells

characteristic: cell type

characteristic: individual

text: Homo sapiens

text: B-cells


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: global run-on

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12750

text: B-cells

text: Homo sapiens

text: B-cells


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: precision global run-on

text: B-cells

text: Homo sapiens

text: B-cells


name: sea urchin embryos, larvae, and adult tissues

text: Caltech

text: live

text: Generic

text: Strongylocentrotus purpuratus

characteristic: organism

text: sea urchin, young juvenile


text: Stanford University

text: live

text: Generic

text: GSY2532 = Single clonal isolate from chemostat Vessel A after 200 generations of evolution in ammonium-limited media; starting strain was GSY86 = interspecific hybrid (Saccharomyces cerevisiae X Saccharomyces uvarum)

characteristic: description

text: Saccharomyces cerevisiae S288C


text: Stanford University

text: live

text: Generic

text: GSY2533 = Single clonal isolate from chemostat Vessel B after 200 generations of evolution in ammonium-limited media; starting strain was GSY86 = interspecific hybrid (Saccharomyces cerevisiae X Saccharomyces uvarum)

text: Saccharomyces cerevisiae S288C

characteristic: title


text: Stanford University

text: live

characteristic: INSDC status

text: Generic

text: GSY2535 = Single clonal isolate from chemostat Vessel C after 200 generations of evolution in ammonium-limited media; starting strain was GSY86 = interspecific hybrid (Saccharomyces cerevisiae X Saccharomyces uvarum)

text: Saccharomyces cerevisiae S288C


text: UC Davis

text: live

text: Generic

characteristic: NCBI submission model

text: RNA-Seq sample used in the article: A high-throughput method for Illumina RNA-Seq library preparation (http://www.frontiersin.org/Plant_Genetics_and_Genomics/abstract/28988). Please see the article for more information.

characteristic: label

text: Solanum lycopersicum

text: Generic sample from Solanum lycopersicum


text: UC Davis

text: live

text: Generic

characteristic: NCBI submission package

text: Solanum pennellii

text: Generic sample from Solanum pennellii


text: Wold, Biology, California Institute of Technology

text: live

text: Generic

text: differentiating ES cells

text: day 4

characteristic: developmental stage

text: Mus musculus

text: differentiating ES cells

text: 129 x castaneus

characteristic: strain

text: 2 d4 M2 sRNA


text: live

text: Generic

text: undifferentiated ES cells

characteristic: cell type

text: day 0

text: Mus musculus

text: undifferentiated ES cells

text: 129 x castaneus

text: 3 d0 ML sRNA


text: live

text: Generic

text: undifferentiated ES cells

text: day 0

text: Mus musculus

text: undifferentiated ES cells

text: 129 x castaneus

text: 4 d0 M2 sRNA


text: University of Victoria

text: live

text: Generic

characteristic: collection date

text: Pacific Ocean: Smoke and Mirrors (S&M) vent, Juan de Fuca Ridge

characteristic: geo loc name

text: Ridgeia piscesae

characteristic: host

text: Particulate detritus collected from grabs of the vestimentiferan tubeworm Ridgeia piscesae in high-flow environment at Smoke and Mirrors (S&M) vent

characteristic: isolation source

text: 47.95 N 129.10 W

characteristic: lat lon

text: uncultured bacterium

text: Generic sample from Uncultured bacterium


characteristic: External Id

text: University of Victoria

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Ridgeia piscesae

text: Particulate detritus collected from grabs of the vestimentiferan tubeworm Ridgeia piscesae in low-flow environment at Smoke and Mirrors (S&M) vent

text: 47.95 N 129.10 W

text: uncultured bacterium


text: University of Victoria

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Pacific Ocean: Grotto (Hotspot 1) vent, Juan de Fuca Ridge

text: Ridgeia piscesae

text: Particulate detritus collected from grabs of the vestimentiferan tubeworm Ridgeia piscesae in high-flow environment at Grotto (Hotspot 1) vent

text: 47.95 N 129.10 W

text: uncultured bacterium

characteristic: organism

characteristic: title


text: University of Victoria

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Ridgeia piscesae

text: Particulate detritus collected from grabs of the vestimentiferan tubeworm Ridgeia piscesae in low-flow environment at Grotto (Hotspot 1) vent

text: 47.95 N 129.10 W

text: uncultured bacterium


text: University of Victoria

text: live

text: Generic

text: Pacific Ocean: Grotto (Hotspot 2) vent, Juan de Fuca Ridge

text: Ridgeia piscesae

text: Particulate detritus collected from grabs of the vestimentiferan tubeworm Ridgeia piscesae in high-flow environment at Grotto (Hotspot 2) vent

text: 47.95 N 129.10 W

text: uncultured bacterium


text: University of Victoria

text: live

text: Generic

text: Ridgeia piscesae

text: Particulate detritus collected from grabs of the vestimentiferan tubeworm Ridgeia piscesae in low-flow environment at Grotto (Hotspot 2) vent

text: 47.95 N 129.10 W

text: uncultured bacterium


text: University of Victoria

text: live

text: Generic

text: Pacific Ocean: Clam Bed vent, Juan de Fuca Ridge

text: Ridgeia piscesae

text: Particulate detritus collected from grabs of the vestimentiferan tubeworm Ridgeia piscesae in high-flow environment at Clam Bed vent

text: 47.96 N 129.10 W

text: uncultured bacterium


text: University of Victoria

text: live

text: Generic

text: Ridgeia piscesae

text: Particulate detritus collected from grabs of the vestimentiferan tubeworm Ridgeia piscesae in low-flow environment at Clam Bed vent

text: 47.96 N 129.10 W

text: uncultured bacterium


text: Institute of Molecular and Cell Biology (A*STAR)

text: live

text: Generic

text: EDGE data from black spotted region (skin) of a single cheetah (Ch1541)

characteristic: description

text: Acinonyx jubatus


text: live

text: Generic

text: EDGE data from yellow background region (skin) of a single cheetah (Ch1541)

text: Acinonyx jubatus


text: live

text: Generic

text: Acinonyx jubatus


BASV rhabdovirus

text: University of California, San Francisco

text: live

text: Generic

text: Serum sample from patient infected with BASV rhabdovirus

text: Hariotina

text: Human serum sample from patient infected with BASV rhabdovirus


MXPyV polyomavirus

text: University of California, San Francisco and Abbott Laboratories, Inc.

text: live

text: Generic

text: Human diarrheal sample from patient infected with MXPyV polyomavirus

text: Polyomaviridae


text: Quest Diagnostics

text: live

text: Generic

text: FLX Titanium 4-region PTP. Region 1: TR11_0616_1RDA: 13 samples, MID3 - MID13 and MID15 - MID16. Region 2: TR11_0616_1RDB: 13 samples, MID1, MID4 - MID13 and MID15-MID16. Region 3: TR11_0616_2RDA: 13 samples, MID3 - MID13 and MID15 - MID16. Region 4: TR11_0616_2RDB: 13 samples, MID1, MID4 - MID13 and MID15-MID16.

text: Human immunodeficiency virus 1

text: Method Comparison Panel 070511ms


name: Staphylococcus epidermidis strain AU12-03

text: Griffith University

text: live

text: Generic

text: Staphylococcus epidermidis AU12-03

characteristic: strain


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: marine metagenome


name: sea urchin embryos, larvae, and adult tissues 2

text: Caltech

text: live

text: Generic

text: Strongylocentrotus purpuratus

text: sea urchin embryos 24hpf


name: sea urchin embryos, larvae, and adult tissues 3

text: Caltech

text: live

text: Generic

text: Strongylocentrotus purpuratus

text: sea urchin embryos 18hpf


name: sea urchin embryos, larvae, and adult tissues 4

text: Caltech

text: live

text: Generic

text: Strongylocentrotus purpuratus

text: sea urchin embryos 10hpf


name: sea urchin embryos, larvae, and adult tissues 5

text: Caltech

text: live

text: Generic

text: Strongylocentrotus purpuratus

text: sea urchin embryos 72hpf


name: sea urchin embryos, larvae, and adult tissues 6

text: Caltech

text: live

text: Generic

text: Strongylocentrotus purpuratus

text: sea urchin, adult tissue, axial gland


name: sea urchin embryos, larvae, and adult tissues 7

text: Caltech

text: live

text: Generic

text: Strongylocentrotus purpuratus

text: sea urchin embryos 0hpf