text: J. Craig Venter Institute

text: live

text: Generic

text: Day 3 replicate 7 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


status: PUBLIC

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Day 7 replicate 7 uninfected Nasal Wash Sample for V1V3 region

characteristic: description

text: Mustela putorius furo

characteristic: organism

text: Sample from Mustela putorius furo

characteristic: title


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 6 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 7 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 3 replicate 5 infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


name: 1133270704967 NegativeControl FERRETV3V5-FAB-01-669_NegativeControl Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Negative Control Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 14 replicate 2 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 3 replicate 4 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 5 replicate 7 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: DOE Joint Genome Institute

text: live

text: Generic

text: Miscanthus sinensis SF54 var Zebrinus

text: Miscanthus sinensis

tag: attribute

characteristic: sample number

text: SF54 var Zebrinus

characteristic: strain

text: Sample from Miscanthus sinensis


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 3 replicate 1 infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 2 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 5 replicate 5 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 14 replicate 1 uninfected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 1 infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 3 replicate 2 uninfected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: The Ohio State University

text: live

text: Generic

text: Larvae of B. antarctica were collected on offshore islands near Palmer Station (64*46’S, 64*04’W) in January, 2010. Larvae were extracted from their natural substrate into ice water using a modified Berlese apparatus, and concentrated samples of larvae were returned to natural substrate and shipped to Ohio State University at 4*C. The sample consisted of 20 larvae gradually chilled from -0.6 to -3*C at vapor pressure equilibrium with surrounding ice, then held at -3*C for 10 d, resulting in ~40% water loss.

text: Belgica antarctica

text: Cryoprotective Dehydration Sample 2


text: The Ohio State University

text: live

text: Generic

text: Belgica antarctica

text: Cryoprotective Dehydration Sample 3


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 5 replicate 2 infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 1 uninfected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 14 replicate 2 infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 4 infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 5 replicate 4 infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 1 infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 5 replicate 2 uninfected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 3 replicate 7 infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 14 replicate 4 infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 1 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 7 replicate 2 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 5 replicate 1 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 14 replicate 3 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 4 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 5 replicate 4 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 3 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 5 replicate 4 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 7 replicate 5 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 3 replicate 5 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 14 replicate 5 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 7 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 6 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 3 replicate 7 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 7 replicate 7 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 3 replicate 2 infected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 0 replicate 1 uninfected Nasal Wash Sample for V3V5 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 3 replicate 2 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 3 replicate 3 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 4 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: DOE Joint Genome Institute

text: live

text: Generic

text: Panicum hallii DOF11

text: Panicum hallii

text: Sample from Panicum hallii


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 1 replicate 1 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 14 replicate 4 Infected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: J. Craig Venter Institute

text: live

text: Generic

text: Day 5 replicate 7 uninfected Nasal Wash Sample for V1V3 region

text: Mustela putorius furo

text: Sample from Mustela putorius furo


text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Primary Mouse T cells isolated ex-vivo and sorted

characteristic: cell source

text: Foxp3-positive CD4+ T cells

characteristic: cell type

text: Mus musculus

text: Treg Foxp3 ChIP

text: Treg Foxp3 ChIP Rep1 (Tech Rep1)


text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Foxp3-positive CD4+ T cells

text: Mus musculus

text: Treg Foxp3 ChIP

text: Treg Foxp3 ChIP Rep1 (Tech Rep2)


text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Foxp3-positive CD4+ T cells

text: Mus musculus

text: Treg Input

text: Treg Input Rep1


text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Foxp3-positive CD4+ T cells

text: Mus musculus

text: Treg Foxp3 ChIP

text: Treg Foxp3 ChIP Rep2


text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Foxp3-positive CD4+ T cells

text: Mus musculus

text: Treg Input

text: Treg Input Rep2


text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Foxp3-positive CD4+ T cells

text: Mus musculus

text: Treg Elf1 ChIP

text: Treg Elf1 ChIP


text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: CD4+ Foxp3-negative T cells

text: Mus musculus

text: CD4 Elf1 ChIP

text: CD4 Elf1 ChIP


text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Foxp3-positive CD4+ T cells

text: Mus musculus

text: Treg Ets1 ChIP

text: Treg Ets1 ChIP


text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: CD4+ Foxp3-negative T cells

text: Mus musculus

text: CD4 Ets1 ChIP

text: CD4 Ets1 ChIP


text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Foxp3-positive CD4+ T cells

text: Mus musculus

text: Treg Cbfb ChIP

text: Treg Cbfb ChIP


text: Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: CD4+ Foxp3-negative T cells

text: Mus musculus

text: CD4 Cbfb ChIP

text: CD4 Cbfb ChIP


text: DOE Joint Genome Institute

text: live

text: Generic

text: Miscanthus sinensis SF16 var Goliath

text: Miscanthus sinensis

text: SF16 var Goliath

text: Sample from Miscanthus sinensis


text: Dr. Wei Yan, Physiology and Cell Biology, University of Nevada, Reno

text: live

text: Generic

text: post-natal day 6

characteristic: age

characteristic: cell purity

text: pooled Sertoli cells

text: small RNA

characteristic: molecule subtype

text: Mus musculus

text: Sertoli Cells

text: Mouse P6 Sertoli Cells


characteristic: External Id

text: SRB-24214, Tumor Biology, Moffitt Cancer Centre & Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: cell line

text: NSCLC

text: Beta arrestin-1 Ab

characteristic: chip antibody

text: Homo sapiens

characteristic: passages

text: A549 Serum starved

text: A549 Serum starved


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NSCLC

text: Beta arrestin-1 Ab

text: Homo sapiens

text: A549 Nicotine stimulated

text: A549 Nicotine


text: live

text: Generic

text: NSCLC

text: Homo sapiens

characteristic: organism

text: A549 Input

text: A549 Input

characteristic: title


text: DOE Joint Genome Institute

text: live

text: Generic

text: Miscanthus sinensis SF2 var Silbertum

characteristic: description

text: Miscanthus sinensis

characteristic: sample number

text: SF2 var Silbertum

characteristic: strain

text: Sample from Miscanthus sinensis


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum bicolor SC155

text: Sorghum bicolor

text: Sample from Sorghum bicolor


text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Generic

text: Sorghum bicolor SC265

text: Sorghum bicolor

text: Sample from Sorghum bicolor


Day 91-granuals

text: University of South Carolina

characteristic: INSDC first public

text: live

text: Generic

text: Active microbial population on cathode granuals within brewery waste MEC. Sample was collected on day 91, and RNA was extracted from cathode granuals. RNA was randomly reverse transcribed, then PCR was performed with A109f-U529r primers (Archaeal, V2-V3) and with B27f-U529r (Bacterial, V1-V3) to create 16S rRNA amplicons. These were sequenced with PacBio, and only circular consensus reads were used.

text: bioreactor metagenome

text: Brewery Waste MEC, Day 91-cathode granuals


Day 108-granuals

text: University of South Carolina

text: live

text: Generic

text: Active microbial population on cathode granuals within brewery waste MEC. Sample was collected on day 108, and RNA was extracted from cathode granuals. RNA was randomly reverse transcribed, then PCR was performed with A109f-U529r primers (Archaeal, V2-V3) and with B27f-U529r (Bacterial, V1-V3) to create 16S rRNA amplicons. These were sequenced with PacBio, and only circular consensus reads were used.

text: bioreactor metagenome

text: Brewery Waste MEC, Day 108-cathode granuals


Day 91-supernatant

text: University of South Carolina

text: live

text: Generic

text: Active microbial population within supernatant of brewery waste MEC. Sample was collected on day 91, and RNA was extracted cells. RNA was randomly reverse transcribed, then PCR was performed with A109f-U529r primers (Archaeal, V2-V3) and with B27f-U529r (Bacterial, V1-V3) to create 16S rRNA amplicons. These were sequenced with PacBio, and only circular consensus reads were used.

text: bioreactor metagenome

text: Brewery Waste MEC, Day 91-supernatant


Day 108-supernatant

text: University of South Carolina

text: live

text: Generic

text: Active microbial population within supernatant of brewery waste MEC. Sample was collected on day 108, and RNA was extracted from cells. RNA was randomly reverse transcribed, then PCR was performed with A109f-U529r primers (Archaeal, V2-V3) and with B27f-U529r (Bacterial, V1-V3) to create 16S rRNA amplicons. These were sequenced with PacBio, and only circular consensus reads were used.

text: bioreactor metagenome

text: Brewery Waste MEC, Day 108-supernatant


text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum bicolor SC971

text: Sorghum bicolor

text: Sample from Sorghum bicolor


text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum bicolor Ajabsido

text: Sorghum bicolor

text: Ajabsido

text: Sample from Sorghum bicolor


text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum bicolor IS3620c

text: Sorghum bicolor

text: Sample from Sorghum bicolor


text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum bicolor Tx631

text: Sorghum bicolor

text: Sample from Sorghum bicolor


text: Broad Institute of MIT & Harvard

text: live

text: Generic

characteristic: cell line

text: CML

characteristic: cell type

text: Homo sapiens

text: fragmented

characteristic: rna state

text: human CML cell line K-562 grown in tissue culture (Ambion)

text: DSN-lite

text: 1000 ng

characteristic: total rna input


text: Broad Institute of MIT & Harvard

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: CML

text: Homo sapiens

text: fragmented

text: DSN-lite PCR

text: 1000 ng


text: Broad Institute of MIT & Harvard

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CML

text: Homo sapiens

text: fragmented

text: RNase H

text: 1000 ng


text: Broad Institute of MIT & Harvard

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: CML

text: Homo sapiens

text: fragmented

text: RNase H NS

text: 1000 ng


text: Broad Institute of MIT & Harvard

text: live

text: Generic

text: CML

text: Homo sapiens

characteristic: organism

text: fragmented

text: Ribo-Zero

characteristic: title

text: 1000 ng


text: Broad Institute of MIT & Harvard

text: live

text: Generic

text: CML

text: Homo sapiens

text: fragmented

text: NuGEN 100f

text: 100 ng


text: Broad Institute of MIT & Harvard

text: live

text: Generic

text: CML

text: Homo sapiens

text: intact

text: PolyA

text: 1000 ng (10 ng polyA+)


text: Broad Institute of MIT & Harvard

text: live

text: Generic

text: CML

text: Homo sapiens

text: fragmented

text: Total

text: 1000 ng


text: Broad Institute of MIT & Harvard

text: live

text: Generic

text: CML

text: Homo sapiens

text: intact

text: TruSeq

text: 1 ng


text: Broad Institute of MIT & Harvard

text: live

text: Generic

text: CML

text: Homo sapiens

text: intact

text: NuGEN 1i

text: 1 ng


text: Broad Institute of MIT & Harvard

text: live

text: Generic

text: CML

text: Homo sapiens

text: fragmented

text: NuGEN 1f

text: 1 ng


text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum bicolor SC1103

characteristic: description

text: Sorghum bicolor

characteristic: sample number

text: Sample from Sorghum bicolor


characteristic: External Id

text: Huntsman Cancer Institute

text: live

text: Generic

characteristic: age

characteristic: cell-line

text: The A673 cell line expresses the EWS/FLI1 translocation fusion transcript and is used to study Ewing sarcoma in vitro and in mouse xenografts.

text: Ewing sarcoma

characteristic: disease

characteristic: label

text: Homo sapiens

text: tumor

characteristic: sample-type

text: female

characteristic: sex

text: muscle

characteristic: tissue-type

text: A673 Ewing sarcoma cell line


text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Sorghum bicolor SC35

text: Sorghum bicolor

characteristic: strain

text: Sample from Sorghum bicolor


Smoltification GWAS

text: CRITFC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Resident rainbow trout and steelhead smolt amples collected from the Upper Yakima River, WA, USA, and Upper Mann Creek, ID, USA. This pool sample includes: Run_ID Sample_ID Barcode Sequence Population Sample Location Putative Life History Sex CRITFC_Smolt1 ID001 AAACGG Upper Yakima River, WA Middle Fork Teanaway River rainbow trout unknown CRITFC_Smolt1 ID002 AACGTT Upper Yakima River, WA Middle Fork Teanaway River rainbow trout unknown CRITFC_Smolt1 ID003 AACTGA Upper Yakima River, WA Middle Fork Teanaway River rainbow trout unknown CRITFC_Smolt1 ID004 AAGACG Upper Yakima River, WA Middle Fork Teanaway River rainbow trout unknown CRITFC_Smolt1 ID005 AAGCTA Upper Yakima River, WA Middle Fork Teanaway River rainbow trout unknown CRITFC_Smolt1 ID006 AATATC Upper Yakima River, WA North Fork Teanaway River steelhead trout male CRITFC_Smolt1 ID007 AATGAG Upper Yakima River, WA North Fork Teanaway River steelhead trout male CRITFC_Smolt1 ID008 ACAAGA Upper Yakima River, WA North Fork Teanaway River steelhead trout male CRITFC_Smolt1 ID009 ACAGCG Upper Yakima River, WA North Fork Teanaway River steelhead trout female CRITFC_Smolt1 ID010 ACATAC Upper Yakima River, WA North Fork Teanaway River steelhead trout female CRITFC_Smolt1 ID011 ACCATG Upper Yakima River, WA Middle Fork Teanaway River steelhead trout female CRITFC_Smolt1 ID012 ACCCCC Upper Yakima River, WA Mainstem Teanaway River steelhead trout unknown CRITFC_Smolt1 ID013 ACTCTT Upper Yakima River, WA Mainstem Teanaway River steelhead trout unknown CRITFC_Smolt1 ID014 ACTGGC Upper Yakima River, WA Mainstem Teanaway River steelhead trout female CRITFC_Smolt1 ID015 AGCCAT Upper Yakima River, WA Mainstem Teanaway River steelhead trout female CRITFC_Smolt1 ID016 AGCGCA Upper Yakima River, WA Mainstem Teanaway River steelhead trout female CRITFC_Smolt1 ID017 AGGGTC Upper Yakima River, WA Mainstem Teanaway River steelhead trout female CRITFC_Smolt1 ID018 AGGTGT Upper Yakima River, WA Mainstem Teanaway River steelhead trout unknown CRITFC_Smolt1 ID019 AGTAGG Upper Yakima River, WA Mainstem Teanaway River steelhead trout female CRITFC_Smolt1 ID020 AGTTAA Upper Yakima River, WA Mainstem Teanaway River steelhead trout unknown CRITFC_Smolt1 ID021 ATAGTA Upper Yakima River, WA Mainstem Teanaway River steelhead trout unknown CRITFC_Smolt1 ID022 ATCAAA Upper Yakima River, WA Mainstem Teanaway River steelhead trout male CRITFC_Smolt1 ID023 ATGCAC Upper Yakima River, WA Mainstem Teanaway River steelhead trout female CRITFC_Smolt1 ID024 ATGTTG Upper Yakima River, WA North Fork Teanaway River steelhead trout male CRITFC_Smolt1 ID025 ATTCCG Upper Yakima River, WA North Fork Teanaway River steelhead trout female CRITFC_Smolt1 ID026 CAAAAA Upper Yakima River, WA North Fork Teanaway River steelhead trout female CRITFC_Smolt1 ID027 CAATCG Upper Yakima River, WA North Fork Teanaway River steelhead trout male CRITFC_Smolt1 ID028 CACCTC Upper Yakima River, WA North Fork Teanaway River steelhead trout female CRITFC_Smolt1 ID029 CAGGCA Upper Yakima River, WA North Fork Teanaway River steelhead trout female CRITFC_Smolt1 ID030 CATACT Upper Yakima River, WA North Fork Teanaway River steelhead trout male CRITFC_Smolt1 ID031 CCATTT Upper Yakima River, WA North Fork Teanaway River steelhead trout female CRITFC_Smolt1 ID032 CCCGGT Upper Yakima River, WA North Fork Teanaway River steelhead trout male CRITFC_Smolt1 ID033 CCCTAA Upper Yakima River, WA Middle Fork Teanaway River steelhead trout unknown CRITFC_Smolt1 ID034 CCGAGG Upper Yakima River, WA Middle Fork Teanaway River steelhead trout unknown CRITFC_Smolt1 ID035 CCGCAT Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt1 ID036 CCTAAC Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt1 ID037 CGAGGC Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt1 ID038 CGCAGA Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt2 ID039 CGCGTG Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt2 ID040 CGGTCC Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt2 ID041 CGTCTA Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt2 ID042 CGTGAT Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt2 ID043 CTACAG Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt2 ID044 CTCGCC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID045 CTGCGA Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID046 CTGGTT Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID047 CTTATG Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID048 CTTTGC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID049 GAAATG Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID050 GAACCA Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID051 GACGAC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID052 GACTCT Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID053 GAGAGA Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID054 GATCGT Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID055 GCAGAT Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID056 GCATGG Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID057 GCCGTA Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID058 GCGACC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID059 GCGCTG Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID060 GCTCAA Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID061 GGACTT Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID062 GGCAAG Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID063 GGGCGC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID064 GGGGCG Upper Yakima River, WA Mainstem Teanaway River rainbow trout female CRITFC_Smolt2 ID065 GGTACA Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID066 GGTTTG Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID067 GTAAGT Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID068 GTATCC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID069 GTCATC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID070 GTGCCT Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt2 ID071 GTGTAA Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt2 ID072 GTTGGA Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt2 ID073 TAAGCT Upper Yakima River, WA Mainstem Teanaway River rainbow trout female CRITFC_Smolt2 ID074 TAATTC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID075 TACACA Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt2 ID076 TACGGG Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID077 TAGTAT Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID078 TATCAC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID079 TCAAAG Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID080 TCCTGC Upper Yakima River, WA Mainstem Teanaway River rainbow trout female CRITFC_Smolt3 ID081 TCGATT Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID082 TCGCCA Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID083 TCGGAC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID084 TCTCGG Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID085 TCTTCT Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID086 TGAACC Upper Yakima River, WA Mainstem Teanaway River rainbow trout female CRITFC_Smolt3 ID087 TGACAA Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID088 TGCCCG Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID089 TGCTTA Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID090 TGGGGA Upper Yakima River, WA Mainstem Teanaway River rainbow trout female CRITFC_Smolt3 ID091 TTATGA Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID092 TTCCGT Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID093 TTCTAG Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID094 TTGAGC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID095 TTTAAT Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID096 TTTGTC Upper Yakima River, WA Mainstem Teanaway River rainbow trout male CRITFC_Smolt3 ID097 AAACGG Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID098 AACTGA Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID099 AAGACG Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID100 AAGCTA Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID101 AATATC Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID102 AATGAG Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID103 ACAAGA Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID104 ACAGCG Upper Yakima River, WA North Fork Teanaway River rainbow trout female CRITFC_Smolt3 ID105 ACATAC Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID106 ACCATG Upper Yakima River, WA North Fork Teanaway River rainbow trout female CRITFC_Smolt3 ID107 ACCCCC Upper Yakima River, WA North Fork Teanaway River rainbow trout female CRITFC_Smolt3 ID108 ACTCTT Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID109 ACTGGC Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID110 AGCCAT Upper Yakima River, WA North Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID111 AGCGCA Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID112 AGGGTC Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt3 ID113 AGGTGT Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID115 AGTAGG Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID116 AGTTAA Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID117 ATAGTA Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID118 ATCAAA Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID119 ATGCAC Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID120 ATGTTG Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID121 ATTCCG Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID122 CAAAAA Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID123 CAATCG Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID124 CACCTC Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID125 CAGGCA Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID126 CATACT Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID127 CCATTT Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID128 CCCGGT Upper Yakima River, WA Middle Fork Teanaway River rainbow trout female CRITFC_Smolt4 ID129 CCCTAA Upper Yakima River, WA Middle Fork Teanaway River rainbow trout female CRITFC_Smolt4 ID130 CCGAGG Upper Yakima River, WA Middle Fork Teanaway River rainbow trout male CRITFC_Smolt4 ID131 CCGCAT Upper Yakima River, WA Middle Fork Teanaway River rainbow trout female CRITFC_Smolt4 ID132 CCTAAC Upper Yakima River, WA Middle Fork Teanaway River rainbow trout female CRITFC_Smolt4 ID133 CGAGGC Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt4 ID134 CGCAGA Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt4 ID135 CGCGTG Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt4 ID138 CGTGAT Upper Mann Creek, ID Upper Mann Creek rainbow trout male CRITFC_Smolt4 ID139 CTACAG Upper Mann Creek, ID Upper Mann Creek rainbow trout male CRITFC_Smolt4 ID140 CTCGCC Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt4 ID141 CTGCGA Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt4 ID142 CTGGTT Upper Mann Creek, ID Upper Mann Creek rainbow trout male CRITFC_Smolt4 ID143 CTTATG Upper Mann Creek, ID Upper Mann Creek rainbow trout male CRITFC_Smolt4 ID144 CTTTGC Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt4 ID145 GAAATG Upper Mann Creek, ID Upper Mann Creek rainbow trout male CRITFC_Smolt4 ID146 GAACCA Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt4 ID147 GACGAC Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt4 ID148 GACTCT Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt4 ID149 GAGAGA Upper Mann Creek, ID Upper Mann Creek steelhead trout male CRITFC_Smolt4 ID150 GATCGT Upper Mann Creek, ID Upper Mann Creek steelhead trout unknown CRITFC_Smolt4 ID151 GCAGAT Upper Mann Creek, ID Upper Mann Creek steelhead trout unknown CRITFC_Smolt4 ID152 GCATGG Upper Mann Creek, ID Upper Mann Creek rainbow trout male CRITFC_Smolt5 ID153 GCCGTA Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID154 GCGACC Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt5 ID155 GCGCTG Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID156 GCTCAA Upper Mann Creek, ID Upper Mann Creek rainbow trout male CRITFC_Smolt5 ID157 GGACTT Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID158 GGCAAG Upper Mann Creek, ID Upper Mann Creek rainbow trout unknown CRITFC_Smolt5 ID159 GGGCGC Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt5 ID160 GGGGCG Upper Mann Creek, ID Upper Mann Creek steelhead trout unknown CRITFC_Smolt5 ID161 GGTACA Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID162 GGTTTG Upper Mann Creek, ID Upper Mann Creek steelhead trout male CRITFC_Smolt5 ID163 GTAAGT Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID164 GTATCC Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt5 ID165 GTCATC Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID166 GTGCCT Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID167 GTGTAA Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt5 ID168 GTTGGA Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID169 TAAGCT Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt5 ID170 TAATTC Upper Mann Creek, ID Upper Mann Creek rainbow trout male CRITFC_Smolt5 ID171 TACACA Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID172 TACGGG Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID173 TAGTAT Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt5 ID174 TATCAC Upper Mann Creek, ID Upper Mann Creek steelhead trout unknown CRITFC_Smolt5 ID175 TCAAAG Upper Mann Creek, ID Upper Mann Creek steelhead trout unknown CRITFC_Smolt5 ID176 TCCTGC Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID177 TCGATT Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID178 TCGCCA Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID179 TCGGAC Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt5 ID180 TCTCGG Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID181 TCTTCT Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID182 TGAACC Upper Mann Creek, ID Upper Mann Creek steelhead trout male CRITFC_Smolt5 ID183 TGACAA Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID184 TGCCCG Upper Mann Creek, ID Upper Mann Creek rainbow trout male CRITFC_Smolt5 ID185 TGCTTA Upper Mann Creek, ID Upper Mann Creek steelhead trout female CRITFC_Smolt5 ID186 TGGGGA Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt5 ID187 TTATGA Upper Mann Creek, ID Upper Mann Creek steelhead trout male CRITFC_Smolt5 ID189 TTCTAG Upper Mann Creek, ID Upper Mann Creek rainbow trout male CRITFC_Smolt5 ID190 TTGAGC Upper Mann Creek, ID Upper Mann Creek rainbow trout female CRITFC_Smolt5 ID191 TTTAAT Upper Mann Creek, ID Upper Mann Creek rainbow trout female

text: Oncorhynchus mykiss

characteristic: organism

text: SbfI RAD tag sequences for smoltification GWAS


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Generic

text: Eucalyptus grandis S1G

characteristic: description

text: Eucalyptus grandis

characteristic: sample number

text: Sample from Eucalyptus grandis

characteristic: title


text: University of Victoria

text: live

text: Generic

characteristic: collection date

text: Ridgeia piscesae trophosome

characteristic: isolation-source

text: symbiont metagenome

text: Ridgeia piscesae

characteristic: specific host

text: Generic sample from Endosymbiont of Ridgeia piscesae


text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Generic

text: Eucalyptus grandis S1F

text: Eucalyptus grandis

text: Sample from Eucalyptus grandis


text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: Generic

text: Hypoxylon sp. EC38

text: Hypoxylon sp. EC38

text: Sample from Hypoxylon sp. EC38


text: DOE Joint Genome Institute

characteristic: INSDC last update

text: live

text: Generic

text: Eucalyptus grandis S1E

text: Eucalyptus grandis

text: Sample from Eucalyptus grandis


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Eucalyptus grandis S1B

text: Eucalyptus grandis

text: Sample from Eucalyptus grandis


text: DOE Joint Genome Institute

text: live

text: Generic

text: Brachypodium distachyon Gaz-8

text: Brachypodium distachyon

characteristic: strain

text: Sample from Brachypodium distachyon


text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: Generic

text: Brachypodium distachyon BdTR2G

text: Brachypodium distachyon

text: Sample from Brachypodium distachyon


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Brachypodium distachyon BdTR10C

text: Brachypodium distachyon

text: Sample from Brachypodium distachyon


name: Archaea involved in waste activated sludge fermentation

text: Tongji University

text: live

text: Generic

characteristic: NCBI submission package

text: bioreactor metagenome

text: Archaeal communities in waste activated sludge fermentation reactors of pH 10 and uncontrolled pH


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: SRA accession

text: Brachypodium distachyon Adi-10

text: Brachypodium distachyon

text: Sample from Brachypodium distachyon


text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum bicolor BTx631

text: Sorghum bicolor

characteristic: organism

text: Sample from Sorghum bicolor


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Generic

text: Sorghum bicolor Tx642

text: Sorghum bicolor

text: Sample from Sorghum bicolor


text: Chinese Academy of Sciences & Yunnan Province, Kunming Institute of Zoology, Chinese Academy of Sciences

text: live

text: Generic

text: Bombina maxima

text: reads from skin of bms


text: DOE Joint Genome Institute

text: live

text: Generic

text: Mimulus guttatus pool 4 population

characteristic: description

text: Erythranthe guttata

text: pool 4 population

text: Sample from Erythranthe guttata


blood 01

text: live

text: Generic

text: Bombina maxima

text: reads from blood of bms


text: DOE Joint Genome Institute

text: live

text: Generic

text: Mimulus guttatus pool 3 population

text: Erythranthe guttata

characteristic: sample number

text: pool 3 population

text: Sample from Erythranthe guttata


text: DOE Joint Genome Institute

text: live

text: Generic

text: Aquilegia coerulea Goldsmith x chrysantha F1 hybrid

text: Aquilegia coerulea

text: F1 hybrid

text: Sample from Aquilegia coerulea

characteristic: title


text: DOE Joint Genome Institute

text: live

text: Generic

text: Clostridium sp. BNL1100

text: Clostridium sp. BNL1100

text: Sample from Clostridium sp. BNL1100


text: DOE Joint Genome Institute

text: live

text: Generic

text: Mimulus guttatus IM62+DUN hybrid 2

text: Erythranthe guttata

text: IM62+DUN hybrid 2

text: Sample from Erythranthe guttata


text: DOE Joint Genome Institute

text: live

text: Generic

text: Mimulus guttatus DUN

text: Erythranthe guttata

text: DUN

text: Sample from Erythranthe guttata


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: culture collection

text: Clostridium alkalicellulosi DSM 17461

text: Acetivibrio alkalicellulosi

text: DSM 17461

text: Sample from Acetivibrio alkalicellulosi

text: type strain of Clostridium alkalicellulosi

characteristic: type material


text: DOE Joint Genome Institute

text: live

text: Generic

text: Burkholderia cepacia ATCC 25416

text: Burkholderia cepacia ATCC 25416

text: ATCC 25416

text: Sample from Burkholderia cepacia ATCC 25416


text: DOE Joint Genome Institute

text: live

text: Generic

text: Thermoanaerobacter siderophilus SR4

text: Thermoanaerobacter siderophilus SR4

text: Sample from Thermoanaerobacter siderophilus SR4


Type I

text: University of Pretoria

text: live

text: Generic

text: Samples were collected from the coastal Miers Valley (78?60’ S, 164? 00’ E) region of Antarctica, which is the southern-most McMurdo Dry Valley, by Prof. D.A. Cowan. Sampling was done in the austral summer of 2010. Soil samples were collected (using aseptic techniques) from both hypolith and surrounding soil, stored in sterile Whirl-Pak bags.

text: soil metagenome

text: Hypolithic sample Type I


Type II

text: University of Pretoria

text: live

text: Generic

text: soil metagenome

text: Hypolith sample Type II


Type III

text: University of Pretoria

text: live

text: Generic

text: soil metagenome

text: Hypolith sample Type III


Type IV

text: University of Pretoria

text: live

text: Generic

text: soil metagenome

text: Open soil sample (Type IV)


text: Columbia University

text: live

text: Generic

text: Control

characteristic: disease state

text: female

characteristic: gender

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

characteristic: tissue

text: Control Und. 1


text: Columbia University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Control

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 2


text: Columbia University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Control

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 3


text: Columbia University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Control

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 4


text: Columbia University

text: live

text: Generic

characteristic: SRA accession

text: Control

text: female

text: Homo sapiens

characteristic: organism

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 5


characteristic: External Id

text: Columbia University

text: live

text: Generic

text: Control

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 6


text: Columbia University

text: live

text: Generic

text: Control

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 7


text: Columbia University

text: live

text: Generic

text: Control

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 8


text: Columbia University

text: live

text: Generic

text: Control

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 9


text: Columbia University

text: live

text: Generic

text: Control

text: female

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 10


text: Columbia University

text: live

text: Generic

text: Control

text: female

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 11


text: Columbia University

text: live

text: Generic

text: Control

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 12


text: Columbia University

text: live

text: Generic

text: Control

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 13


text: Columbia University

text: live

text: Generic

text: Control

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 14


text: Columbia University

text: live

text: Generic

text: Control

text: female

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 15


text: Columbia University

text: live

text: Generic

text: Control

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Control Und. 16


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 1


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 2


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 3


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 4


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 5


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 6


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: female

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 7


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 8


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: female

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 9


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 10


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 11


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: female

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 12


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 13


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: female

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 14


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 15


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: male

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 16


text: Columbia University

text: live

text: Generic

text: Parkinson's Disease PD

text: female

text: Homo sapiens

text: Brain cortex

text: Human brain cortex (BA9)

text: Parkinson's Disease PD 17


name: Pool no. 1, Caenorhabditis elegans mixed-stage wild-type N2 larvae, RT-PCR

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans

text: Generic sample from Caenorhabditis elegans


name: Caenorhabditis elegans linker cells, fourth larval stage (L4), nhr-67(RNAi)

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Pool no. 2, Caenorhabditis elegans mixed-stage wild-type N2 larvae, RT-PCR

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Pool of RT-PCRs from five individually dissected and RT-PCRed Caenorhabditis elegans linker cells, third larval stage (L3)

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Pool of RT-PCRs from five individually dissected and RT-PCRed Caenorhabditis elegans linker cells, fourth larval stage (L4)

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Caenorhabditis elegans linker cell, fourth larval stage (L4), nhr-67(RNAi), number 1

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3), number 1

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3), number 2

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3), number 3

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3), number 4

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3), number 5

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), number 1

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), number 2

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), number 3

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), number 4

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), number 5

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Pool no. 1, C. elegans mixed-stage wild-type larvae

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from a pool of five RT-PCRs performed on five aliquots of dilute mRNA from Caenorhabditis elegans mixed-stage wild-type N2 larvae; RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; first of two larval pools in this study; not spiked; Jacobs Genome Center Illumina sequencing library 11129.

characteristic: description

text: Caenorhabditis elegans

text: Pool no. 1, Caenorhabditis elegans mixed-stage wild-type N2 larvae, RT-PCR


name: Pooled C. elegans linker cells, L4, nhr-67(RNAi)

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from pool of RT-PCRs from five individually dissected and RT-PCRed Caenorhabditis elegans linker cells, fourth larval stage (L4), nhr-67(RNAi); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; spiked; Jacobs Genome Center Illumina sequencing library 11319.

text: Caenorhabditis elegans

text: Pool of RT-PCRs from five individually dissected and RT-PCRed Caenorhabditis elegans linker cells, fourth larval stage (L4), nhr-67(RNAi)

characteristic: title


text: W313, Transcription Lab, Centre for Cellular and Molecular Biology

text: live

text: Generic

text: anti-Myc tag antibody, clone A46

characteristic: chip antibody

characteristic: genetic background

text: mid-log (OD 600=0.7)

characteristic: growth phase

text: Saccharomyces cerevisiae

text: mid-log phase ASF1-18myc cells, ChIP

characteristic: strain


text: live

text: Generic

text: normal rabbit IgG

text: mid-log (OD 600=0.7)

text: Saccharomyces cerevisiae

text: mid-log phase ASF1-18myc cells, mock

text: Mock


name: Pool no. 2, C. elegans mixed-stage wild-type larvae

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from a pool of five RT-PCRs performed on five aliquots of dilute mRNA from Caenorhabditis elegans mixed-stage wild-type N2 larvae; RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; second of two larval pools in this study; spiked; Jacobs Genome Center Illumina sequencing library 11338.

text: Caenorhabditis elegans

text: Pool no. 2, Caenorhabditis elegans mixed-stage wild-type N2 larvae, RT-PCR


Pooled C. elegans linker cells, L3

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from pool of RT-PCRs from five individually dissected and RT-PCRed Caenorhabditis elegans linker cells, third larval stage (L3); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; spiked; Jacobs Genome Center Illumina sequencing library 11339.

text: Caenorhabditis elegans

text: Pool of RT-PCRs from five individually dissected and RT-PCRed Caenorhabditis elegans linker cells, third larval stage (L3)


Pooled C. elegans linker cells, L4

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from pool of RT-PCRs from five individually dissected and RT-PCRed Caenorhabditis elegans linker cells, fourth larval stage (L4); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; spiked; Jacobs Genome Center Illumina sequencing library 11340.

text: Caenorhabditis elegans

text: Pool of RT-PCRs from five individually dissected and RT-PCRed Caenorhabditis elegans linker cells, fourth larval stage (L4)


name: Individual C. elegans linker cell, L4, nhr-67(RNAi), no. 1

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), nhr-67(RNAi); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12827.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), nhr-67(RNAi), number 1


name: Individual C. elegans linker cell, L4, nhr-67(RNAi), no. 2

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), nhr-67(RNAi); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12828.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), nhr-67(RNAi), number 2


name: Individual C. elegans linker cell, L4, nhr-67(RNAi), no. 3

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), nhr-67(RNAi); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12829.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), nhr-67(RNAi), number 3


name: Individual C. elegans linker cell, L4, nhr-67(RNAi), no. 4

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), nhr-67(RNAi); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12830.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), nhr-67(RNAi), number 4


name: Individual C. elegans linker cell, L4, nhr-67(RNAi), no. 5

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), nhr-67(RNAi); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12831.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), nhr-67(RNAi), number 5


name: Individual C. elegans linker cell, L3, no. 1

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12832.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3), number 1


name: Individual C. elegans linker cell, L3, no. 2

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12833.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3), number 2


name: Individual C. elegans linker cell, L3, no. 3

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12834.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3), number 3


name: Individual C. elegans linker cell, L3, no. 4

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12835.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3), number 4


name: Individual C. elegans linker cell, L3, no. 5

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12836.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, third larval stage (L3), number 5


name: Individual C. elegans linker cell, L4, no. 1

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12837.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), number 1


name: Individual C. elegans linker cell, L4, no. 2

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12838.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), number 2


name: Individual C. elegans linker cell, L4, no. 3

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12839.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), number 3


name: Individual C. elegans linker cell, L4, no. 4

text: Cornell Univ., Mol. Biol. and Genet.

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12840.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), number 4


name: Individual C. elegans linker cell, L4, no. 5

text: Cal. Inst. of Tech., Division of Biology

text: live

text: Generic

text: RNA-seq reads from RT-PCR of one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4); RT-PCR was restricted to the 3'-most ~1.5 kb of transcripts, to allow roughly equal amplification of both short and long mRNAs; not spiked; Jacobs Genome Center Illumina sequencing library 12841.

text: Caenorhabditis elegans

text: RT-PCR from one individually dissected and RT-PCRed Caenorhabditis elegans linker cell, fourth larval stage (L4), number 5


text: Internal Medicine, Yale University School of Medicine

text: live

text: Generic

text: monocyte-derived macrophages

characteristic: cell type

characteristic: donor identifier

text: Homo sapiens

text: macrophages, mock

text: Subject1 Mock

text: mock

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, WNV

text: Subject1 WNV

text: West Nile virus (WNV)


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, mock

text: Subject2 Mock

text: mock


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: monocyte-derived macrophages

text: Homo sapiens

characteristic: organism

text: macrophages, WNV

text: Subject2 WNV

text: West Nile virus (WNV)


characteristic: External Id

text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, mock

text: Subject3 Mock

characteristic: title

text: mock


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, WNV

text: Subject3 WNV

text: West Nile virus (WNV)


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, mock

text: Subject4 Mock

text: mock


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, WNV

text: Subject4 WNV

text: West Nile virus (WNV)


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, mock

text: Subject5 Mock

text: mock


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, WNV

text: Subject5 WNV

text: West Nile virus (WNV)


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, mock

text: Subject6 Mock

text: mock


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, WNV

text: Subject6 WNV

text: West Nile virus (WNV)


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, mock

text: Subject7 Mock

text: mock


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, WNV

text: Subject7 WNV

text: West Nile virus (WNV)


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, mock

text: Subject8 Mock

text: mock


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, WNV

text: Subject8 WNV

text: West Nile virus (WNV)


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, mock

text: Subject9 Mock

text: mock


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, WNV

text: Subject9 WNV

text: West Nile virus (WNV)


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, mock

text: Subject10 Mock

text: mock


text: live

text: Generic

text: monocyte-derived macrophages

text: Homo sapiens

text: macrophages, WNV

text: Subject10 WNV

text: West Nile virus (WNV)


Celine

text: University of Hyderabad

text: live

text: Generic

text: Celine

characteristic: cultivar

text: Transcriptome assembly and annotation of Camelina sativa

characteristic: description

text: Camelina sativa

text: General Sample for Camelina sativa


Q

text: Kunming Institute of Zoology,the Chinese Academy of Sciences

text: live

text: Generic

text: Q

characteristic: label

text: Cynopterus sphinx

text: brain Sample for Cynopterus sphinx


Rhizophagus irregularis

text: UdeM

text: live

text: Generic

text: This read set was one of four that was used to as a basis for the evolutionary network analysis in Estimating genome diversity in arbuscular mycorrhizal fungi: the case for a pangenome by Eva Boon, S*bastien Halary, Eric Bapteste and Mohamed Hijri. Approximately one million sterile spores of Glomus irregulare DAOM-197198 (commercial inoculant Mycorhise* ASP) were provided by Premier Tech Biotechnologies (Rivi*re-Du-Loup, QC, Canada) in a liquid suspension of 4000 spores per ml. This suspension was filtered on a sterile plastic 35 *m sieve. Under a binocular microscope, spores were checked for root contamination and root fragments were removed with forceps. DNA was extracted using DNeasy Plant Mini kit (Qiagen), according to manufacturer’s instructions. The purified DNA was then sent to the Genome Quebec Innovation Centre (McGill University, Montreal) for pyrosequencing using the GS FLX Titanium whole genome shotgun kit (Roche 454 Life Science), employing a full run for each DNA sample

text: Rhizophagus irregularis DAOM 181602=DAOM 197198

text: Glomus irregulare DAOM 197198


Glomus diaphanum

text: UdeM

text: live

text: Generic

text: This read set was one of four that was used to as a basis for the evolutionary network analysis in Estimating genome diversity in arbuscular mycorrhizal fungi: the case for a pangenome by Eva Boon, S*bastien Halary, Eric Bapteste and Mohamed Hijri The fungal material of isolate Glomus diaphanum DAOM 229456 was obtained from in vitro cultures with Agrobacterium rhizogenens transformed carrot roots. Spores and hyphae were freshly harvested by dissolving the Gellan-Gum matrix in which cultures were grown in a solution containing 0.0083 N sodium citrate and 0.0017 N citric acid. Spores and hyphae were gently crushed in a 1.5 ml microtube using a sterilized pestle. DNA was extracted using DNeasy Plant Mini kit (Qiagen), according to manufacturer’s instructions. The purified DNA was then sent to the Genome Qu*bec Innovation Centre (McGill University, Montr*al) for pyrosequencing using the GS FLX Titanium whole genome shotgun kit (Roche 454 Life Science), employing a full run for each DNA sample

text: Oehlia diaphana

text: Glomus diaphanum DAOM 229456


Glomus irregulare

text: UdeM

text: live

text: Generic

text: This read set was one of four that was used to as a basis for the evolutionary network analysis in Estimating genome diversity in arbuscular mycorrhizal fungi: the case for a pangenome by Eva Boon, S*bastien Halary, Eric Bapteste and Mohamed Hijri The fungal material of isolate G. irregulare DAOM 234179 was obtained from in vitro cultures with Agrobacterium rhizogenens transformed carrot roots. Spores and hyphae were freshly harvested by dissolving the Gellan-Gum matrix in which cultures were grown in a solution containing 0.0083 N sodium citrate and 0.0017 N citric acid. Spores and hyphae were gently crushed in a 1.5 ml microtube using a sterilized pestle. DNA was extracted using DNeasy Plant Mini kit (Qiagen), according to manufacturer’s instructions. The purified DNA was then sent to the Genome Qu*bec Innovation Centre (McGill University, Montr*al) for pyrosequencing using the GS FLX Titanium whole genome shotgun kit (Roche 454 Life Science), employing a full run for each DNA sample

text: Rhizophagus cf. irregularis MUCL 46240

text: Rhizophagus irregularis DAOM 234179


UTI Samples 1

text: University of Queensland

text: live

text: Generic

text: Sequences from infected urine from individuals with acute uncomplicated UTI

text: human metagenome

text: Urinary tract infection sequences


text: Institute of Biophysics, Academy of Sciences of the Czech Republic

text: live

text: Generic

text: Rumex acetosa

text: R. acetosa male cDNA


text: live

text: Generic

text: Rumex acetosa

text: R. acetosa female cDNA


text: Bioinformatics and Computational Biology, Genentech Inc.

text: live

text: Generic

text: bone marrow derived macrophages

characteristic: cell type

text: anti-FLAG [Sigma, catalog# A2220]

characteristic: chip antibody

text: BAP1-3X Flag Tagged KI

characteristic: genotype/variation

text: Mus musculus

text: Primary cells

characteristic: passage

text: bone marrow progenitors

characteristic: strain

text: BAP1 flag_CHIP-seq


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: bone marrow derived macrophages

text: anti-HCF1 [Bethyl Laboratories, catalog# A301-399A]

text: BAP1 WT

text: Mus musculus

text: Primary cells

text: bone marrow progenitors


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: bone marrow derived macrophages

text: anti-OGT1 [Sigma, catalog# 06264]

text: BAP1 WT

text: Mus musculus

text: Primary cells

text: bone marrow progenitors


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: bone marrow derived macrophages

text: none (input control)

text: BAP1 WT

text: Mus musculus

characteristic: organism

text: Primary cells

text: bone marrow progenitors


characteristic: External Id

text: Machine Learning and Computational Biology, Biosystems Science and Engineering, ETH Zurich

text: live

text: Generic

text: Leiomyoma cells

text: PR

text: Santa Cruz

characteristic: chip antibody manufacturer

text: Homo sapiens

text: Leiomyoma cells

text: PR-binding Leiomyoma ChIP-Seq

characteristic: title

characteristic: treatment


text: live

text: Generic

characteristic: cell line

text: PR

characteristic: chip antibody

text: Santa Cruz

text: Homo sapiens

text: T47D cells

text: PR-binding T47D ChIP-Seq


text: Immunology, Genentech Inc.

text: live

text: Generic

text: Naïve T-cells from spleen under Th17 polarizing conditions

characteristic: cell type/growth condition

text: IRF-4 Antibody (M-17)

text: Santa Cruz Biotechnologies

characteristic: chip antibody vendor

text: Mus musculus

text: Th17 polarized cells

text: 42 hrs

characteristic: timepoint

text: Th17 42hr IRF4


text: Immunology, Genentech Inc.

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: BATF

text: Mus musculus

text: Th17 polarized cells

characteristic: strain

text: 42 hrs

text: Th17 42hr BATF


text: Immunology, Genentech Inc.

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Naïve T-cells from spleen under Th2 polarizing conditions

text: IRF-4 Antibody (M-17)

text: Santa Cruz Biotechnologies

text: Mus musculus

text: Th2 polarized cells

text: 42 hrs

text: Th2 42hr IRF4


text: Immunology, Genentech Inc.

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Naïve T-cells from spleen activated by anti-CD3 and anti-CD28

text: IRF-4 Antibody (M-17)

text: Santa Cruz Biotechnologies

text: Mus musculus

text: Th0 polarized cells

text: 42 hrs

text: Th0 42hr IRF4


characteristic: External Id

text: Immunology, Genentech Inc.

text: live

text: Generic

text: Bone marrow derived dendritic cells stimulated with LPS for 6hrs

text: IRF-4 Antibody (M-17)

text: Santa Cruz Biotechnologies

text: Mus musculus

characteristic: organism

text: 6 hrs

text: BMDC 6hr LPS IRF4


text: Immunology, Genentech Inc.

text: live

text: Generic

text: Mus musculus

text: Th17 polarized cells

text: 42 hrs

text: Th17 42hr Input

characteristic: title


text: Immunology, Genentech Inc.

text: live

text: Generic

text: Mus musculus

text: Th0 polarized cells

text: 42 hrs

text: Th0 42hr Input


text: Immunology, Genentech Inc.

text: live

text: Generic

text: Mus musculus

text: Bone marrow derived dendritic cells stimulated with LPS

text: 6 hrs

text: BMDC 6hr LPS Input


text: NGSP, BAYGEN

text: live

text: Generic

characteristic: ecotype

text: wild type

characteristic: genotype

text: Arabidopsis thaliana

text: untreated

characteristic: treatment


text: NGSP, BAYGEN

text: live

text: Generic

text: wild type

text: Arabidopsis thaliana

text: 1mM H2O2 for 6h


text: NGSP, BAYGEN

text: live

text: Generic

text: overexpressing the HSFA4A transcription factor

text: Arabidopsis thaliana

text: HSF

text: HSF

text: untreated


text: NGSP, BAYGEN

text: live

text: Generic

text: Arabidopsis thaliana

text: 1mM H2O2 for 6h


Spartina maritima

text: University of Rennes 1

text: live

text: Generic

text: Sporobolus maritimus

text: Spartina maritima


Spartina alterniflora

text: University of Rennes 1

text: live

text: Generic

text: France: Landerneau, Finistère

characteristic: geo loc name

text: Sporobolus alterniflorus

text: Population from Landerneau (Finistère, France)

text: Spartina alterniflora


characteristic: GEO Accession

text: Gene Expression Omnibus

text: live

text: Generic

text: source: control liver, M-D-

characteristic: description

text: wildtype

text: Danio rerio

text: liver

characteristic: tissue

text: GSM1000554: M-D-_1


text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: source: control liver, M-D-

text: wildtype

text: Danio rerio

text: liver

text: GSM1000555: M-D-_2


text: Gene Expression Omnibus

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: source: control liver, M+D-

text: Tg(fabp10:TA; TRE:Myc; krt4:GFP)

text: Danio rerio

text: liver

text: GSM1000556: M+D-_1


text: Gene Expression Omnibus

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: source: control liver, M+D-

text: Tg(fabp10:TA; TRE:Myc; krt4:GFP)

text: Danio rerio

text: liver

text: GSM1000557: M+D-_2


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: source: control liver, M-D+

text: wildtype

text: Danio rerio

text: liver

text: GSM1000558: M-D+_1

text: doxycycline


characteristic: External Id

text: Gene Expression Omnibus

text: live

text: Generic

text: source: control liver, M-D+

text: wildtype

text: Danio rerio

characteristic: organism

text: liver

text: GSM1000559: M-D+_2

text: doxycycline


text: Gene Expression Omnibus

text: live

text: Generic

text: source: liver tumor, M+D+

text: Tg(fabp10:TA; TRE:Myc; krt4:GFP)

text: Danio rerio

text: liver

text: GSM1000560: M+D+_1

characteristic: title

text: doxycycline


text: Gene Expression Omnibus

text: live

text: Generic

text: source: liver tumor, M+D+

text: Tg(fabp10:TA; TRE:Myc; krt4:GFP)

characteristic: genotype

text: Danio rerio

text: liver

text: GSM1000561: M+D+_2

text: doxycycline


name: Pool no. 1, C. elegans mixed-stage wild-type larvae

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans

text: Generic sample from Caenorhabditis elegans


name: Pooled C. elegans linker cells, L4, nhr-67(RNAi)

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Pool no. 2, C. elegans mixed-stage wild-type larvae

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


Pooled C. elegans linker cells, L3

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


Pooled C. elegans linker cells, L4

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L4, nhr-67(RNAi), no. 1

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L4, nhr-67(RNAi), no. 2

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L4, nhr-67(RNAi), no. 3

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L4, nhr-67(RNAi), no. 4

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L4, nhr-67(RNAi), no. 5

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L3, no. 1

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L3, no. 2

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L3, no. 3

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L3, no. 4

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L3, no. 5

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L4, no. 1

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L4, no. 2

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L4, no. 3

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L4, no. 4

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


name: Individual C. elegans linker cell, L4, no. 5

text: California Institute of Technology

text: live

text: Generic

text: Caenorhabditis elegans


text: Molecular Biology, Sloan-Kettering Institute

text: live

text: Generic

text: asynchronous culture

characteristic: cell cycle stage

text: galactose

characteristic: media

text: Saccharomyces cerevisiae

text: WT [yIW160-SSDDCS], galactose

text: WT [yIW160-SSDDCS]

characteristic: strain


text: live

text: Generic

text: asynchronous culture

text: glucose

text: Saccharomyces cerevisiae

text: WT [yIW160-SSDDCS], glucose

text: WT [yIW160-SSDDCS]


text: live

text: Generic

text: asynchronous culture

text: Saccharomyces cerevisiae

text: WT [yIW160]

text: WT [yIW160]


DNA 25m

text: Duke University

text: live

text: Generic

text: mixed environmental DNA sample from Pacific Ocean, station ALOHA (22.75°N, 158°W), 25 m, Sept 2009 16S (eubacteria) PCR

characteristic: description

text: marine metagenome

text: DNA 25 m station ALOHA


text: Boyer, Biology, Massachusetts Institute of Technology

text: live

text: Generic

text: embryonic

characteristic: age

text: Oct4-GFP, retrovirally-transduced with Oct4, Sox2, c-myc and Klf4

text: Mus musculus

text: 129/svJae x C57BL/6

text: partially reprogrammed mouse embryonic fibroblast

characteristic: tissue

text: 11.3/ MCV6, partially reprogrammed MEF


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: embryonic

text: Mus musculus

text: 129/svJae x C57BL/6

text: 11.5/ MCV8, partially reprogrammed MEF


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: reprogrammed cell

text: Mus musculus

text: 129/svJae x C57BL/6

text: induced pluripotent stem cell

text: miPS MCV8.1, fully reprogrammed MEF (iPS)


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: embryonic

text: Mus musculus

text: MEF

text: 129/svJae x C57BL/6

text: fibroblast

text: MEF, used for reprogramming to MCV6/MCV8/MCV8.1


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: embryonic

text: wild type

text: Mus musculus

text: mESC v6.5

text: 129/svJae x C57BL/6

text: mESC

text: v6.5 mouse ESC replicate 1


characteristic: External Id

text: live

text: Generic

text: embryonic

text: wild type

text: Mus musculus

characteristic: organism

text: mESC v6.5

text: 129/svJae x C57BL/6

text: mESC

text: v6.5 mouse ESC replicate 2


text: live

text: Generic

text: embryonic

text: wild type

characteristic: genotype

text: Mus musculus

text: mESC E14

text: mESC

text: E14 mouse ESC replicate 1

characteristic: title


text: live

text: Generic

text: embryonic

text: wild type

text: Mus musculus

text: mESC E14

text: mESC

text: E14 mouse ESC replicate 2


text: Zaret lab, Cell and Developmental Biology, University of Pennsylvania School of Medicine

text: live

text: Generic

text: BJ

characteristic: cell line

text: foreskin fibroblast cell

characteristic: cell type

characteristic: chip antibody

text: abcam

characteristic: chip antibody vendor

text: MOCK, not-infected

characteristic: genotype/variation

text: Homo sapiens

text: BJ_Oct4 ChIP-Seq_48hr_mockinduction

text: 48hrs mock induction with 1µg/ml dox

characteristic: time point

text: Oct4 ChIP-Seq at 48hrs Mock Induction


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: BJ

text: foreskin fibroblast cell

text: c-Myc

text: R&D

text: MOCK, not-infected

text: Homo sapiens

text: BJ_c-Myc ChIP-Seq_48hr_mockinduction

text: 48hrs mock induction with 1µg/ml dox

text: c-Myc ChIP-Seq at 48hrs Mock Induction


text: Dr. El-dahr, Pediatrics Department, Tulane University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mus musculus

text: mK3 Cells

characteristic: strain


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mus musculus

text: mK4 Cells


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

characteristic: organism

text: Input Genomic DNA

characteristic: sample type

text: mK3 Cells


text: live

text: Generic

characteristic: cell line

text: Mus musculus

text: Input Genomic DNA

text: mK4 Cells

characteristic: title


name: Bacteria community during drinking water treatment processes

text: University of Tennessee

text: live

text: Generic

text: ecological metagenomes


Angus Genome

text: Texas A&M University

text: live

text: Generic

text: Bos taurus

text: Angus Cow Genome Sequence


Nellore Genome

text: Texas A&M University

text: live

text: Generic

text: Bos taurus

text: Nellore Cow genome Sequence


text: ENCODE DCC

text: live

text: Generic

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K36me3

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: 1)Stam lab ; 2)CSHL lab

characteristic: biomaterial provider

text: Kidney

characteristic: cell

text: Kidney

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

text: Ren - Ludwig Institue for Cancer Research

characteristic: lab description

text: Pooled & filtered

characteristic: labversion

text: Mus musculus

text: MACS

characteristic: softwareversion

text: Kidney

text: C57 black 6, the most common inbred strain of laboratory mouse

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K27me3

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

text: 1)LICR lab; 2)CSHL lab

text: tissue

characteristic: biomaterial type

text: mouse

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: LICR-m

text: Pooled & filtered

text: Mus musculus

characteristic: organism

text: male

characteristic: sex

text: MACS

text: SmIntestine

characteristic: strain

text: Small Intestine

characteristic: tissue type

text: LICR_ChipSeq_SmIntestine_H3K27me3_adult-8wks

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Adult 8 weeks

text: rabbit polyclonal. Antibody Target: H3K4me3

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

text: Millipore

characteristic: antibody vendorname

text: Genhong Cheng Lab, UCLA

characteristic: biomaterial provider

text: BMDM

characteristic: cell

text: Bone marrow derived macrophage

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: Pooled & filtered

characteristic: labversion

text: Mus musculus

text: MACS

characteristic: softwareversion

text: BMDM

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me1

characteristic: antibody antibodydescription

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

text: Genhong Cheng Lab, UCLA

text: BMDM

text: Bone marrow derived macrophage

text: mouse

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: LICR-m

text: Pooled & filtered

text: Mus musculus

characteristic: organism

text: MACS

text: BMDM

characteristic: strain

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Adult 8 weeks

text: Abcam

characteristic: antibody vendorname

text: 1)LICR lab; 2)CSHL lab

characteristic: biomaterial provider

text: Testis

characteristic: cell

text: Testis

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: Pooled & filtered

characteristic: labversion

text: Mus musculus

text: MACS

characteristic: softwareversion

text: Testis

characteristic: strain description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Adult 8 weeks

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

text: 1)LICR lab; 2)CSHL lab

text: tissue

characteristic: biomaterial type

text: mouse

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: LICR-m

text: Pooled & filtered

text: Mus musculus

characteristic: organism

text: male

characteristic: sex

text: MACS

text: Thymus

characteristic: strain

text: thymus

characteristic: tissue type

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Adult 8 weeks

text: Abcam

characteristic: antibody vendorname

text: 1)LICR lab; 2)CSHL lab

characteristic: biomaterial provider

text: SmIntestine

characteristic: cell

text: Small Intestine

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: LICR-m

characteristic: lab

characteristic: lab description

text: Pooled & filtered

characteristic: labversion

text: Mus musculus

text: MACS

characteristic: softwareversion

text: SmIntestine

characteristic: strain description

text: LICR_ChipSeq_SmIntestine_H3K36me3_adult-8wks