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text: Homo sapiens

text: IBS

characteristic: population

text: child

text: LCL

text: male

text: Human 1000 genomes individual HG01535

text: Duo


text: NCBI

text: live

text: Generic

text: Generic

text: Human 1000 genomes individual HG01688

text: Homo sapiens

text: IBS

text: mother

text: LCL

characteristic: sample type

text: female

text: Human 1000 genomes individual HG01688

text: Duo

characteristic: type


characteristic: External Id

text: NCBI

text: live

text: Generic

text: Generic

text: Human 1000 genomes individual HG01689

text: Homo sapiens

characteristic: organism

text: IBS

text: child

text: LCL

text: female

text: Human 1000 genomes individual HG01689

text: Duo


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: Human 1000 genomes individual HG01692

text: Homo sapiens

text: IBS

text: mother

text: LCL

text: female

text: Human 1000 genomes individual HG01692

text: Duo


text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Human 1000 genomes individual HG01693

text: Homo sapiens

text: IBS

text: child

text: LCL

text: female

text: Human 1000 genomes individual HG01693

text: Duo


text: NCBI

text: live

characteristic: INSDC status

text: Generic

text: Generic

characteristic: biosamplemodel

text: Human 1000 genomes individual HG01714

text: Homo sapiens

text: IBS

text: mother

text: LCL

text: female

text: Human 1000 genomes individual HG01714

text: Duo


text: NCBI

text: live

text: Generic

text: Generic

text: Human 1000 genomes individual HG01712

text: Homo sapiens

text: IBS

text: child

text: LCL

text: male

characteristic: sex

text: Human 1000 genomes individual HG01712

characteristic: title

text: Duo


characteristic: DNA source

text: NCBI

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: Human 1000 genomes individual HG01750

text: Homo sapiens

text: IBS

text: mother

text: LCL

text: female

text: Human 1000 genomes individual HG01750

text: Duo


text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

text: Human 1000 genomes individual HG01749

text: Homo sapiens

text: IBS

text: child

text: LCL

text: male

text: Human 1000 genomes individual HG01749

text: Duo


text: NCBI

text: live

text: Generic

text: Generic

text: Human 1000 genomes individual HG01754

characteristic: description

text: Homo sapiens

text: IBS

characteristic: population

text: LCL

text: male

text: Human 1000 genomes individual HG01754

text: Singleton


text: NCBI

text: live

text: Generic

text: Generic

text: Human 1000 genomes individual HG01760

text: Homo sapiens

text: IBS

text: LCL

characteristic: sample type

text: female

text: Human 1000 genomes individual HG01760

text: Singleton

characteristic: type


characteristic: External Id

text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

characteristic: cell line

text: third instar larval stage

characteristic: developmental stage

text: Drosophila melanogaster

characteristic: organism

text: male

text: dorsal mesothoracic disc

characteristic: tissue

text: Cl8 PE CNV Replicate 1 extraction1_seq1 aliquote 1


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: third instar larval stage

text: Drosophila melanogaster

text: male

text: dorsal mesothoracic disc

text: Cl8 PE CNV Replicate 2 extraction2_seq1 aliquote 1


text: live

text: Generic

characteristic: NCBI submission model

text: late embryonic stage

text: se/e

characteristic: genotype

text: Drosophila melanogaster

text: female

characteristic: sex

text: embryo-derived cell-line

text: KC167 WT Early S-phase Replicate 1 extraction1_seq1 aliquote 1

characteristic: title


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: embryo-derived cell-line

text: KC167 WT Mid-Early S-phase Replicate 1 extraction2_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: embryo-derived cell-line

text: KC167 WT Mid-Late S-phase Replicate 1 extraction3_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: embryo-derived cell-line

text: KC167 WT Late S-phase Replicate 1 extraction4_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: embryo-derived cell-line

text: KC167 WT Early S-phase Replicate 2 extraction5_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: embryo-derived cell-line

text: KC167 WT Mid-Early S-phase Replicate 2 extraction6_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: embryo-derived cell-line

text: KC167 WT Mid-Late S-phase Replicate 2 extraction7_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: se/e

text: Drosophila melanogaster

text: female

text: embryo-derived cell-line

text: KC167 WT Late S-phase Replicate 2 extraction8_seq1 aliquote 1


text: Wang Lab, Deptarment of Microbiology and Cell Science, University of Florida

text: live

text: Generic

text: OD = 0.4 (exponential phase)

characteristic: growth stage

text: Nutrient Broth

characteristic: medium

text: enriched mRNA

characteristic: molecule subtype

text: Xanthomonas citri pv. citri

text: citri

characteristic: pathovar

text: A (306)_Nutrient Broth

text: A (306)

characteristic: strain


characteristic: External Id

text: live

text: Generic

text: OD = 0.4 (exponential phase)

text: enriched mRNA

text: Xanthomonas citri pv. citri

characteristic: organism

text: citri

text: A (306)_XVM2

text: A (306)


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: OD = 0.4 (exponential phase)

text: Nutrient Broth

text: enriched mRNA

text: Xanthomonas citri pv. citri

text: citri

text: Aw 12879_Nutrient Broth

text: Aw 12879


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: OD = 0.4 (exponential phase)

text: enriched mRNA

text: Xanthomonas citri pv. citri

text: citri

text: Aw 12879_XVM2

text: Aw 12879


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: cell line

text: late embryonic stage

characteristic: developmental stage

text: Drosophila melanogaster

text: male

text: embryo-derived cell-line

characteristic: tissue

text: S2-DRSC WT Early S-phase Replicate 1 extraction1_seq1 aliquote 1


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: late embryonic stage

text: Drosophila melanogaster

text: male

characteristic: sex

text: embryo-derived cell-line

text: S2-DRSC WT Mid-Early S-phase Replicate 1 extraction2_seq1 aliquote 1

characteristic: title


text: live

text: Generic

text: late embryonic stage

text: Drosophila melanogaster

text: male

text: embryo-derived cell-line

text: S2-DRSC WT Mid-Late S-phase Replicate 1 extraction3_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: Drosophila melanogaster

text: male

text: embryo-derived cell-line

text: S2-DRSC WT Late S-phase Replicate 1 extraction4_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: Drosophila melanogaster

text: male

text: embryo-derived cell-line

text: S2-DRSC WT Early S-phase Replicate 2 extraction5_seq1 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: late embryonic stage

text: Drosophila melanogaster

text: male

text: embryo-derived cell-line

text: S2-DRSC WT Mid-Early S-phase Replicate 2 extraction6_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: Drosophila melanogaster

text: male

text: embryo-derived cell-line

text: S2-DRSC WT Mid-Late S-phase Replicate 2 extraction7_seq1 aliquote 1


text: live

text: Generic

text: late embryonic stage

text: Drosophila melanogaster

text: male

text: embryo-derived cell-line

text: S2-DRSC WT Late S-phase Replicate 2 extraction8_seq1 aliquote 1


text: live

text: Generic

text: third instar larval stage

text: y v f mal

characteristic: genotype

text: Drosophila melanogaster

text: CNS-derived cell-line

text: ML-DmBG3-c2 WT Early S-phase Replicate 1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: third instar larval stage

text: y v f mal

text: Drosophila melanogaster

text: CNS-derived cell-line

text: ML-DmBG3-c2 WT Mid-Early S-phase Replicate 1 extraction2_seq1 aliquote 1


text: live

text: Generic

text: third instar larval stage

text: y v f mal

text: Drosophila melanogaster

text: CNS-derived cell-line

text: ML-DmBG3-c2 WT Mid-Late S-phase Replicate 1 extraction3_seq1 aliquote 1


text: live

text: Generic

text: third instar larval stage

text: y v f mal

text: Drosophila melanogaster

text: CNS-derived cell-line

text: ML-DmBG3-c2 WT LateSphase Replicate 1 extraction4_seq1 aliquote 1


text: live

text: Generic

text: third instar larval stage

text: y v f mal

text: Drosophila melanogaster

text: CNS-derived cell-line

text: ML-DmBG3-c2 WT Early S-phase Replicate 2 extraction5_seq1 aliquote 1


text: live

text: Generic

text: third instar larval stage

text: y v f mal

text: Drosophila melanogaster

text: CNS-derived cell-line

text: ML-DmBG3-c2 WT Mid-Early S-phase_Replicate 2 extraction6_seq1 aliquote 1


text: live

text: Generic

text: third instar larval stage

text: y v f mal

text: Drosophila melanogaster

text: CNS-derived cell-line

text: ML-DmBG3-c2 WT Mid-Late S-phase Replicate 2 extraction7_seq1 aliquote 1


text: live

text: Generic

text: third instar larval stage

text: y v f mal

text: Drosophila melanogaster

text: CNS-derived cell-line

text: ML-DmBG3-c2 WT Late S-phase Replicate 2 extraction8_seq1 aliquote 1


text: AMNH

text: live

text: Generic

text: Favia sp. fav23

text: Generic sample from Favia sp.


text: AMNH

text: live

text: Generic

characteristic: collection date

text: Favia sp. fav62

text: Generic sample from Favia sp. fav62


Hermodice carunculata

characteristic: External Id

text: AMNH

text: live

text: Generic

text: Fire worm

characteristic: description

text: Bahamas

characteristic: isolate

text: Hermodice carunculata

text: General Sample for Hermodice carunculata


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: NINDS Huntingtons Disease

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: GRU

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: female

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: NINDS Huntingtons Disease

characteristic: submitter handle

text: Sample from Blood of a human female participant in the dbGaP study Genetic Modifiers of Huntington's Disease


text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: NINDS Huntingtons Disease

text: Blood

text: GRU

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

characteristic: sex

text: Prospective Longitudinal Cohort

text: Genetic Modifiers of Huntington's Disease

text: NINDS Huntingtons Disease

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: NINDS Huntingtons Disease

text: Lymphoblast cell line

text: HDR

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

text: NINDS Huntingtons Disease

text: Sample from Lymphoblast cell line of a human male participant in the dbGaP study Genetic Modifiers of Huntington's Disease


text: dbGaP

text: live

text: Generic

text: NINDS Huntingtons Disease

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Lymphoblast cell line

characteristic: body site

text: HDR

text: Yes

characteristic: is technical control

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

text: NINDS Huntingtons Disease

text: Sample from Lymphoblast cell line of a human female participant in the dbGaP study Genetic Modifiers of Huntington's Disease


text: dbGaP

text: live

text: Generic

text: NINDS Huntingtons Disease

text: Blood

text: GRU

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: male

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

text: NINDS Huntingtons Disease

text: Sample from Blood of a human male participant in the dbGaP study Genetic Modifiers of Huntington's Disease


text: dbGaP

characteristic: INSDC last update

text: live

text: Generic

text: NINDS Huntingtons Disease

text: Lymphoblast cell line

text: HDR

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

characteristic: submitted sample id

characteristic: submitted subject id

text: NINDS Huntingtons Disease

characteristic: submitter handle


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: NINDS Huntingtons Disease

text: Blood

text: HDR

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

characteristic: sex

text: Prospective Longitudinal Cohort

text: NINDS Huntingtons Disease


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: NINDS Huntingtons Disease

text: Post-mortem Brain

text: HDR

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

text: NINDS Huntingtons Disease

text: Sample from Post-mortem Brain of a human male participant in the dbGaP study Genetic Modifiers of Huntington's Disease

characteristic: title


text: dbGaP

text: live

text: Generic

text: NINDS Huntingtons Disease

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Post-mortem Brain

characteristic: body site

text: HDR

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

text: NINDS Huntingtons Disease

text: Sample from Post-mortem Brain of a human female participant in the dbGaP study Genetic Modifiers of Huntington's Disease


text: dbGaP

text: live

text: Generic

text: NINDS Huntingtons Disease

text: Blood

text: HDR

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: male

text: Prospective Longitudinal Cohort

characteristic: study design

text: NINDS Huntingtons Disease


text: dbGaP

characteristic: INSDC last update

text: live

text: Generic

text: NINDS Huntingtons Disease

text: Blood

text: GRU

text: Yes

characteristic: is technical control

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

characteristic: study name

characteristic: submitted sample id

text: NINDS Huntingtons Disease


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

characteristic: analyte type

text: NINDS Huntingtons Disease

text: Yes

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

characteristic: submitted subject id

text: NINDS Huntingtons Disease

characteristic: submitter handle

text: DNA sample from a human female participant in the dbGaP study Genetic Modifiers of Huntington's Disease


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: NINDS Huntingtons Disease

text: Post-mortem Brain

text: HDR

text: SNP Genotypes (Array)

text: Homo sapiens

text: Prospective Longitudinal Cohort

text: NINDS Huntingtons Disease

text: Sample from Post-mortem Brain of a human participant in the dbGaP study Genetic Modifiers of Huntington's Disease


text: dbGaP

text: live

text: Generic

text: DNA

text: NINDS Huntingtons Disease

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Yes

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

characteristic: sex

text: Prospective Longitudinal Cohort

text: NINDS Huntingtons Disease

text: DNA sample from a human male participant in the dbGaP study Genetic Modifiers of Huntington's Disease

characteristic: title


text: dbGaP

characteristic: INSDC last update

text: live

text: Generic

text: NINDS Huntingtons Disease

text: Blood

characteristic: body site

text: HDR

text: Yes

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

characteristic: organism

text: female

text: Prospective Longitudinal Cohort

characteristic: study design

text: NINDS Huntingtons Disease


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: NINDS Huntingtons Disease

text: Blood

text: GRU

text: Yes

characteristic: is technical control

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

characteristic: study name

characteristic: submitted sample id

text: NINDS Huntingtons Disease


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: NINDS Huntingtons Disease

text: Lymphoblast cell line

text: HDR

text: Yes

text: SNP Genotypes (Array)

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

characteristic: submitted subject id

text: NINDS Huntingtons Disease

characteristic: submitter handle


text: Stanford University

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: SRA accession

text: Human gut

characteristic: biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIMARKS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: env package

text: Feces

characteristic: feature

text: Bangladesh

characteristic: geo loc name

characteristic: host age

text: Feces

characteristic: host body product

text: Healthy

characteristic: host disease

text: female

characteristic: host sex

characteristic: host subject id

text: Lumen of large intestine

text: miens-survey

characteristic: investigation type

characteristic: label

text: Feces

characteristic: material

text: human gut metagenome

text: Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States - 16S rDNA Targeted Locus

characteristic: project name

text: Homo sapiens

characteristic: specific host

text: MIMARKS Survey related sample from Bacteria


characteristic: External Id

text: Stanford University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: SRA accession

text: Human gut

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.human-gut

text: Feces

text: Bangladesh

text: Feces

text: Healthy

text: male

text: Lumen of large intestine

text: miens-survey

text: Feces

text: human gut metagenome

characteristic: organism

text: Homo sapiens

characteristic: title


text: Stanford University

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Human gut

characteristic: biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIMARKS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: env package

text: Feces

characteristic: feature

text: USA

characteristic: geo loc name

characteristic: host age

text: Feces

characteristic: host body product

text: Healthy

characteristic: host disease

text: female

characteristic: host sex

characteristic: host subject id

text: Lumen of large intestine

text: miens-survey

text: Feces

text: human gut metagenome

text: Homo sapiens


characteristic: External Id

text: Stanford University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Human gut

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: MIGS/MIMS/MIMARKS.human-gut

text: Feces

text: USA

text: Feces

text: Healthy

text: male

text: Lumen of large intestine

text: miens-survey

characteristic: investigation type

characteristic: label

text: Feces

characteristic: material

text: human gut metagenome

characteristic: project name

text: Homo sapiens

characteristic: specific host


text: University of British Columbia Department of Botany - Rieseberg Lab

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Centaurea solstitialis

characteristic: organism

text: California CA-P1-2

characteristic: title


text: live

text: Generic

text: Centaurea solstitialis

text: California CA-P2-2


text: live

text: Generic

text: Centaurea solstitialis

text: California CA-P2-4


text: live

text: Generic

text: Centaurea solstitialis

text: California CA-P3-1


text: live

text: Generic

text: Centaurea solstitialis

text: California CA-P3-2


text: live

text: Generic

text: Centaurea solstitialis

text: California CA-P4-1


text: live

text: Generic

text: Centaurea solstitialis

text: California CA-P4-3


text: live

text: Generic

text: Centaurea solstitialis

text: California CA-P4-4


text: live

text: Generic

text: Centaurea solstitialis

text: California CA-P5-3


text: live

text: Generic

text: Centaurea solstitialis

text: California CA-P5-4


text: live

text: Generic

text: Centaurea solstitialis

text: Argentina AR-P1-24


text: live

text: Generic

text: Centaurea solstitialis

text: Argentina AR-P1-25C


text: live

text: Generic

text: Centaurea solstitialis

text: Argentina AR-P6-13


text: live

text: Generic

text: Centaurea solstitialis

text: Argentina AR-P6-26


text: live

text: Generic

text: Centaurea solstitialis

text: Argentina AR-P8-15


text: live

text: Generic

text: Centaurea solstitialis

text: Argentina AR-P8-19


text: live

text: Generic

text: Centaurea solstitialis

text: Argentina AR-P13-24


text: live

text: Generic

text: Centaurea solstitialis

text: Argentina AR-P13-28


text: live

text: Generic

text: Centaurea solstitialis

text: Spain SP-P1-5


text: live

text: Generic

text: Centaurea solstitialis

text: Spain SP-P1-10


text: live

text: Generic

text: Centaurea solstitialis

text: Spain SP-P2-2


text: live

text: Generic

text: Centaurea solstitialis

text: Spain SP-P2-6


text: live

text: Generic

text: Centaurea solstitialis

text: R Georgia GA-P1-1


text: live

text: Generic

text: Centaurea solstitialis

text: R Georgia GA-P2-1


text: live

text: Generic

text: Centaurea solstitialis

text: R Georgia GA-P3-4


text: live

text: Generic

text: Centaurea solstitialis

text: R Georgia GA-P4-3


text: live

text: Generic

text: Centaurea solstitialis

text: R Georgia GA-P5-4


text: live

text: Generic

text: Centaurea solstitialis

text: R Georgia GA-P5-24


text: live

text: Generic

text: Centaurea solstitialis

text: Hungary HU-P1-8


text: live

text: Generic

text: Centaurea solstitialis

text: Hungary HU-P2-10


text: live

text: Generic

text: Centaurea solstitialis

text: Romania RO-P1-6


text: live

text: Generic

text: Centaurea solstitialis

text: Romania RO-P5-10


text: live

text: Generic

text: Centaurea solstitialis

text: Turkey TK-P1-3


text: live

text: Generic

text: Centaurea solstitialis

text: Turkey TK-P1-5


text: live

text: Generic

text: Centaurea solstitialis

text: Turkey TK-P2-3


text: live

text: Generic

text: Centaurea solstitialis

text: Turkey TK-P2-4


text: live

text: Generic

text: Centaurea solstitialis

text: Turkey TK-P3-2


text: live

text: Generic

text: Centaurea solstitialis

text: Turkey TK-P5-4


text: live

text: Generic

text: Centaurea solstitialis

text: Turkey TK-P5-9


text: Genome Research Foundation

text: live

text: Generic

text: Homo sapiens


text: IUE

text: live

text: Generic

text: 454 pyrosequencing of hypervariable regions from 16S rRNA genes was used to explore microbial communities from 20 activated sludge samples, 17 river water samples and 18 river sediment samples.Totally, 1,042,441 effective reads were generated from these 55 samples. These reads were assigned into different taxonomies by using RDP classifier. Besides, Cluster analysis, PCA, correlation analysis was also used to assess the beta-diversity among all these samples.

characteristic: description

text: bioreactor metagenome

text: Pyrosequencing of the 16S rRNA gene to reveal bacterial diversity from bioreactors and Jiulong River


characteristic: External Id

text: FGCZ

text: live

text: Generic

text: Homo sapiens

text: Microbial Communities in the Respiratory Tract of Patients with Immune Suppression and Interstitial Lung Diseases: Are they disordered


Gimjang kimchi microbiome

text: School of Biological Sciences, Research Center for Biomolecules and Biosystems, Chung-Ang University

characteristic: INSDC center name

text: live

text: Generic

text: food metagenome

text: Changes in microbial communities and metabolites during fermentation of gimjang kimchi


text: Molecular Medicine, International Centre for Genetic Engineering and Biotechnology - ICGEB

characteristic: INSDC first public

text: live

text: Generic

text: post natal day 1

characteristic: age

text: cardiomyocytes

characteristic: cell type

text: Mus musculus

text: Neonatal cardiomyocytes

text: CD1 mice

characteristic: strain

text: mock

text: mock transfected

characteristic: treatment


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: post natal day 1

text: cardiomyocytes

text: Mus musculus

text: Neonatal cardiomyocytes

text: CD1 mice

text: transfected with cel-miR-67


text: live

text: Generic

text: post natal day 1

text: cardiomyocytes

text: Mus musculus

text: Neonatal cardiomyocytes

text: CD1 mice

text: transfected with hsa-miR-590-3p


text: live

text: Generic

text: post natal day 1

text: cardiomyocytes

text: Mus musculus

text: Neonatal cardiomyocytes

text: CD1 mice

text: transfected with hsa-miR-199a-3p


text: Armstrong Lab, Pediatric Oncology, Dana-Farber Cancer Institute

text: live

text: Generic

characteristic: background strain

text: Lgr5(hi) stem cells

text: H3K79me2 antibody: Abcam ab3594 (lot number 121826)

characteristic: chip antibody

text: Mus musculus

text: intestinal Lgr5(hi) stem cells

text: proximal intestinal epithelium

characteristic: tissue

text: Lgr5(hi) H3K79me2_ChIPSeq


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lgr5(hi) stem cells

text: Mus musculus

text: intestinal Lgr5(hi) stem cells

text: proximal intestinal epithelium

text: Lgr5(hi) input DNA


text: live

text: Generic

text: differentiated villus cells

text: Mus musculus

characteristic: organism

text: intestinal villus cells

text: proximal intestinal epithelium

text: villus H3K79me2_ChIPSeq

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: differentiated villus cells

text: Mus musculus

text: intestinal villus cells

text: proximal intestinal epithelium

text: viillus input DNA


text: Beijing Genome Institute

characteristic: INSDC first public

text: live

text: Generic

text: Lasioglossum albipes

text: Sample from Lasioglossum albipes


text: Fudan Univ, Shanghai, China

text: live

text: Generic

characteristic: cell line

text: embryonic kidney cells

characteristic: cell type

text: Homo sapiens

text: GST-tagged TET3 CXXC domain protein

characteristic: pull down

text: Human embryonic kidney cells, pull-down of GST-tagged TET3 CXXC domain protein


text: LSBM, RCAST

characteristic: INSDC last update

text: live

text: Generic

text: passage 6

characteristic: cell passage

text: HUVECs

text: Pd75C9 (p3Sp5S RNA Pol II)

text: ChIA-PET

characteristic: library

text: Homo sapiens


text: CRITFC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: RAD sequence libraries from various collections of Pacific Lamprey spanning their geographical range.

characteristic: description

text: Entosphenus tridentatus

text: RAD sequencing in Pacific Lamprey


characteristic: GEO Accession

text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission model

text: ES cells

characteristic: cell

text: source: 5fC enriched DNA from Tdg fl/fl mouse ES cells, replicate 1

text: Mus musculus

characteristic: strain

text: GSM1019068: 5fC enriched DNA from Tdg fl/fl mouse ES cells, replicate 1


text: Gene Expression Omnibus

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ES cells

text: source: 5fC enriched DNA from Tdg fl/fl mouse ES cells, replicate 2

text: Mus musculus

characteristic: organism

text: GSM1019069: 5fC enriched DNA from Tdg fl/fl mouse ES cells, replicate 2

characteristic: title


characteristic: External Id

text: Gene Expression Omnibus

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: ES cells

text: source: 5hmC enriched DNA from Tdg fl/fl mouse ES cells, replicate 1

text: Mus musculus

text: GSM1019070: 5hmC enriched DNA from Tdg fl/fl mouse ES cells, replicate 1


text: Gene Expression Omnibus

characteristic: INSDC last update

text: live

text: Generic

text: ES cells

text: source: 5hmC enriched DNA from Tdg fl/fl mouse ES cells, replicate 2

text: Mus musculus

text: GSM1019071: 5hmC enriched DNA from Tdg fl/fl mouse ES cells, replicate 2


text: Gene Expression Omnibus

text: live

text: Generic

text: p300 ChIP-Seq, sc-585 (Santa Cruz)

characteristic: antibody

text: ES cells

text: source: p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate a

text: Mus musculus

text: GSM1019072: p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate a


text: Gene Expression Omnibus

text: live

text: Generic

text: p300 ChIP-Seq, sc-585 (Santa Cruz)

text: ES cells

text: source: p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate b

text: Mus musculus

text: GSM1019073: p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate b


text: Gene Expression Omnibus

text: live

text: Generic

text: p300 ChIP-Seq, sc-585 (Santa Cruz)

text: ES cells

text: source: p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate c

text: Mus musculus

text: GSM1019074: p300 ChIP-Seq from Tdg fl/fl mouse ES cells, replicate c


text: Gene Expression Omnibus

text: live

text: Generic

text: ES cells

text: source: Non-enriched input genomic DNA from Tdg fl/fl mouse ES cells

text: Mus musculus

text: GSM1019075: Non-enriched input genomic DNA from Tdg fl/fl mouse ES cells


text: Gene Expression Omnibus

text: live

text: Generic

text: ES cells

text: source: 5fC enriched DNA from Tdg -/- mouse ES cells, replicate 1

text: Mus musculus

text: GSM1019076: 5fC enriched DNA from Tdg -/- mouse ES cells, replicate 1


text: Gene Expression Omnibus

text: live

text: Generic

text: ES cells

text: source: 5fC enriched DNA from Tdg -/- mouse ES cells, replicate 2

text: Mus musculus

text: GSM1019077: 5fC enriched DNA from Tdg -/- mouse ES cells, replicate 2


text: Gene Expression Omnibus

text: live

text: Generic

text: ES cells

text: source: 5hmC enriched DNA from Tdg -/- mouse ES cells, replicate 1

text: Mus musculus

text: GSM1019078: 5hmC enriched DNA from Tdg -/- mouse ES cells, replicate 1


text: Gene Expression Omnibus

text: live

text: Generic

text: ES cells

text: source: 5hmC enriched DNA from Tdg -/- mouse ES cells, replicate 2

text: Mus musculus

text: GSM1019079: 5hmC enriched DNA from Tdg -/- mouse ES cells, replicate 2


text: Gene Expression Omnibus

text: live

text: Generic

text: p300 ChIP-Seq, sc-585 (Santa Cruz)

text: ES cells

text: source: p300 ChIP-Seq from Tdg -/- mouse ES cells, replicate a

text: Mus musculus

text: GSM1019080: p300 ChIP-Seq from Tdg -/- mouse ES cells, replicate a


text: Gene Expression Omnibus

text: live

text: Generic

text: p300 ChIP-Seq, sc-585 (Santa Cruz)

text: ES cells

text: source: p300 ChIP-Seq from Tdg -/- mouse ES cells, replicate b

text: Mus musculus

text: GSM1019081: p300 ChIP-Seq from Tdg -/- mouse ES cells, replicate b


text: Gene Expression Omnibus

text: live

text: Generic

text: p300 ChIP-Seq, sc-585 (Santa Cruz)

text: ES cells

text: source: p300 ChIP-Seq from Tdg -/- mouse ES cells, replicate c

text: Mus musculus

text: GSM1019082: p300 ChIP-Seq from Tdg -/- mouse ES cells, replicate c


text: Gene Expression Omnibus

text: live

text: Generic

text: ES cells

text: source: Non-enriched input genomic DNA from Tdg -/- mouse ES cells

text: Mus musculus

text: GSM1019083: Non-enriched input genomic DNA from Tdg -/- mouse ES cells


text: Gene Expression Omnibus

text: live

text: Generic

text: ES cells

text: source: Non-NaBH4 Control enrichment from Tdg fl/fl mouse ES cells a

text: Mus musculus

text: GSM1019084: Non-NaBH4 Control enrichment from Tdg fl/fl mouse ES cells a


text: Gene Expression Omnibus

text: live

text: Generic

text: ES cells

text: source: Non-NaBH4 Control enrichment from Tdg fl/fl mouse ES cells b

text: Mus musculus

text: GSM1019085: Non-NaBH4 Control enrichment from Tdg fl/fl mouse ES cells b


text: Jin Lab, Human Genetics, Emory University

text: live

text: Generic

text: ES cells

text: Mus musculus

text: Tdg fl/fl polyA RNA-Seq

text: Tdg fl/fl polyA RNA-Seq replicate 1


text: live

text: Generic

text: ES cells

text: Mus musculus

text: Tdg fl/fl polyA RNA-Seq

text: Tdg fl/fl polyA RNA-Seq replicate 2


text: live

text: Generic

text: ES cells

text: Mus musculus

text: Tdg -/- polyA RNA-Seq

text: Tdg -/- polyA RNA-Seq replicate 1


text: live

text: Generic

text: ES cells

text: Mus musculus

text: Tdg -/- polyA RNA-Seq

text: Tdg -/- polyA RNA-Seq replicate 2


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: MEF

characteristic: cell type

text: Mouse embryonic fibroblasts (MEF) from a C57Bl/6 mouse. The founding animal was a WT littermate of mice containing targeted mutations made in 129/SvJ ESCs that were injected into C57Bl/6 blastocysts. After germline transmission of the mutant allele the mice were backcrossed twice to C57Bl/6. MEFs from which iPS clones were derived for experiment 1 as described by Young et al., 2012.

text: Mus musculus

text: cell culture

characteristic: sample type

text: C57Bl/6 MEF Young2012_exp1


text: yes

characteristic: Alkaline Phosphatase Staining Positive

text: yes

characteristic: ESC-like morphology

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: yes

characteristic: Nanog+ Flow Cytometric Staining

text: yes

characteristic: Oct 3/4+ Flow Cytometric Staining

text: yes

characteristic: SSEA+ Flow Cytometric Staining

characteristic: age

text: Generic

text: iPS

characteristic: days in culture post transduction

characteristic: days in culture pre-transduction

text: Induced pluripotent stem cell (iPS) line derived from mouse embryonic fibroblasts using an established polycistronic lentivirus containing three transcription factors, OCT4, SOX2, and KLF4 (OSK) (Chang et al., 2009). The founding animal was a WT littermate of mice containing targeted mutations made in 129/SvJ ESCs that were injected into C57Bl/6 blastocysts. After germline transmission of the mutant allele the mice were backcrossed twice to C57Bl/6. Clone 4 from experiment 1 as described by Young, et al., 2012

characteristic: description

text: Mus musculus

text: cell culture

text: C57Bl/6 iPS Young2012_exp1-4


text: yes

text: yes

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: yes

text: yes

characteristic: SRA accession

text: yes

text: Generic

text: iPS

text: Induced pluripotent stem cell (iPS) line derived from mouse embryonic fibroblasts using an established polycistronic lentivirus containing three transcription factors, OCT4, SOX2, and KLF4 (OSK) (Chang et al., 2009). The founding animal was a WT littermate of mice containing targeted mutations made in 129/SvJ ESCs that were injected into C57Bl/6 blastocysts. After germline transmission of the mutant allele the mice were backcrossed twice to C57Bl/6. Clone 5 from experiment 1 as described by Young, et al., 2012.

text: Mus musculus

characteristic: organism

text: cell culture

text: C57Bl/6 iPS Young2012_exp1-5

characteristic: title


text: yes

characteristic: Alkaline Phosphatase Staining Positive

text: yes

characteristic: ESC-like morphology

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: yes

text: yes

text: yes

text: Generic

characteristic: biosamplemodel

text: iPS

characteristic: cell type

text: Induced pluripotent stem cell (iPS) line derived from mouse embryonic fibroblasts using an established polycistronic lentivirus containing three transcription factors, OCT4, SOX2, and KLF4 (OSK) (Chang et al., 2009). The founding animal was a WT littermate of mice containing targeted mutations made in 129/SvJ ESCs that were injected into C57Bl/6 blastocysts. After germline transmission of the mutant allele the mice were backcrossed twice to C57Bl/6. Clone 9 from experiment 1 as described by Young, et al., 2012.

text: Mus musculus

text: cell culture

characteristic: sample type

text: C57Bl/6 iPS Young2012_exp1-9


text: live

characteristic: INSDC status

text: Generic

characteristic: age

text: Generic

text: tail-tip

characteristic: body site

text: TTF

text: Mouse tail tip fibroblasts from C57Bl/6 mouse. The founding animal was a WT littermate of mice containing targeted mutations made in 129/SvJ ESCs that were injected into C57Bl/6 blastocysts. After germline transmission of the mutant allele the mice were backcrossed extensively to C57Bl/6. Tail tip fibroblasts from which iPS clones were derived for experiment 2 as described by Young et al., 2012.

text: Mus musculus

text: cell culture

text: C57Bl/6 TTF Young2012_exp2


text: yes

text: yes

characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: yes

characteristic: Nanog+ Flow Cytometric Staining

text: yes

characteristic: Oct 3/4+ Flow Cytometric Staining

text: yes

characteristic: SSEA+ Flow Cytometric Staining

text: Generic

text: tail-tip

text: iPS

characteristic: days in culture post transduction

characteristic: days in culture pre-transduction

text: Induced pluripotent stem cell (iPS) line derived from mouse tail tip fibroblasts using an established polycistronic lentivirus containing three transcription factors, OCT4, SOX2, and KLF4 (OSK) (Chang et al., 2009). The founding animal was a WT littermate of mice containing targeted mutations made in 129/SvJ ESCs that were injected into C57Bl/6 blastocysts. After germline transmission of the mutant allele the mice were backcrossed extensively to C57Bl/6. Clone 1 from experiment 2 as described by Young, et al., 2012.

characteristic: description

text: Mus musculus

text: cell culture

text: C57Bl/6 iPS Young2012_exp2-1


text: yes

characteristic: Alkaline Phosphatase Staining Positive

text: yes

characteristic: ESC-like morphology

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: yes

text: yes

characteristic: SRA accession

text: yes

text: Generic

text: tail-tip

text: iPS

text: Induced pluripotent stem cell (iPS) line derived from mouse tail tip fibroblasts using an established polycistronic lentivirus containing three transcription factors, OCT4, SOX2, and KLF4 (OSK) (Chang et al., 2009). The founding animal was a WT littermate of mice containing targeted mutations made in 129/SvJ ESCs that were injected into C57Bl/6 blastocysts. After germline transmission of the mutant allele the mice were backcrossed extensively to C57Bl/6. Clone 2 from experiment 2 as described by Young, et al., 2012.

text: Mus musculus

characteristic: organism

text: cell culture

text: C57Bl/6 iPS Young2012_exp2-2

characteristic: title


text: yes

text: yes

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: yes

text: yes

text: yes

characteristic: age

text: Generic

characteristic: biosamplemodel

text: tail-tip

characteristic: body site

text: iPS

characteristic: cell type

text: Induced pluripotent stem cell (iPS) line derived from mouse tail tip fibroblasts using an established polycistronic lentivirus containing three transcription factors, OCT4, SOX2, and KLF4 (OSK) (Chang et al., 2009). The founding animal was a WT littermate of mice containing targeted mutations made in 129/SvJ ESCs that were injected into C57Bl/6 blastocysts. After germline transmission of the mutant allele the mice were backcrossed extensively to C57Bl/6. Clone 3 from experiment 2 as described by Young, et al., 2012.

text: Mus musculus

text: cell culture

characteristic: sample type

text: C57Bl/6 iPS Young2012_exp2-3


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: MEF

text: Mouse embryonic fibroblasts (MEF) from a Gusb-/- embryo from an intercross between congenic Gusb+/- mice, a mouse model for Mucopolysaccharicosis type VII (MPSVII) (Jackson Laboratory). MEFs from which iPS clones were derived for experiment 3 as described by Young et al., 2012.

characteristic: description

text: Gusb-/-

characteristic: genotype

text: Mus musculus

text: cell culture

text: C57Bl/6 Gusb-/- MEF Young2012_exp3


text: yes

characteristic: Alkaline Phosphatase Staining Positive

text: yes

characteristic: ESC-like morphology

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: yes

characteristic: Nanog+ Flow Cytometric Staining

text: yes

characteristic: Oct 3/4+ Flow Cytometric Staining

text: yes

characteristic: SSEA+ Flow Cytometric Staining

text: Generic

text: iPS

characteristic: days in culture post transduction

characteristic: days in culture pre-transduction

text: Induced pluripotent stem cell (iPS) line derived from mouse embryonic fibroblasts (MEF) using an established polycistronic lentivirus containing three transcription factors, OCT4, SOX2, and KLF4 (OSK) (Chang et al., 2009). The MEFs used in this experiment were from a Gusb-/- embryo from an intercross between congenic Gusb+/- mice, a mouse model for Mucopolysaccharicosis type VII (MPSVII) (Jackson Laboratory). Clone 6, experiment 3 as described by Young, et al., 2012.

text: Gusb-/-

text: Mus musculus

text: cell culture

text: C57Bl/6 iPS Young2012_exp3-6


text: yes

text: yes

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: yes

text: yes

characteristic: SRA accession

text: yes

characteristic: age

text: Generic

characteristic: biosamplemodel

text: iPS

text: Induced pluripotent stem cell (iPS) line derived from mouse embryonic fibroblasts (MEF) using an established polycistronic lentivirus containing three transcription factors, OCT4, SOX2, and KLF4 (OSK) (Chang et al., 2009). The MEFs used in this experiment were from a Gusb-/- embryo from an intercross between congenic Gusb+/- mice, a mouse model for Mucopolysaccharicosis type VII (MPSVII) (Jackson Laboratory). Clone 5, experiment 3 as described by Young, et al., 2012.

text: Gusb-/-

text: Mus musculus

characteristic: organism

text: cell culture

text: C57Bl/6 iPS Young2012_exp3-5

characteristic: title


text: yes

characteristic: Alkaline Phosphatase Staining Positive

text: yes

characteristic: ESC-like morphology

characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: yes

text: yes

text: yes

text: Generic

text: iPS

characteristic: cell type

text: Induced pluripotent stem cell (iPS) line derived from mouse embryonic fibroblasts (MEF) using an established polycistronic lentivirus containing three transcription factors, OCT4, SOX2, and KLF4 (OSK) (Chang et al., 2009). The MEFs used in this experiment were from a Gusb-/- embryo from an intercross between congenic Gusb+/- mice, a mouse model for Mucopolysaccharicosis type VII (MPSVII) (Jackson Laboratory). Clone 1, experiment 3 as described by Young, et al., 2012.

characteristic: description

text: Gusb-/-

characteristic: genotype

text: Mus musculus

text: cell culture

characteristic: sample type

text: C57Bl/6 iPS Young2012_exp3-1


text: yes

text: yes

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: yes

characteristic: Nanog+ Flow Cytometric Staining

text: yes

characteristic: Oct 3/4+ Flow Cytometric Staining

text: yes

characteristic: SSEA+ Flow Cytometric Staining

text: Generic

text: iPS

characteristic: days in culture post transduction

characteristic: days in culture pre-transduction

text: Induced pluripotent stem cell (iPS) line derived from mouse embryonic fibroblasts (MEF) using an established polycistronic lentivirus containing three transcription factors, OCT4, SOX2, and KLF4 (OSK) (Chang et al., 2009). The MEFs used in this experiment were from a Gusb-/- embryo from an intercross between congenic Gusb+/- mice, a mouse model for Mucopolysaccharicosis type VII (MPSVII) (Jackson Laboratory). Clone 2, experiment 3 as described by Young, et al., 2012.

text: Gusb-/-

text: Mus musculus

text: cell culture

text: C57Bl/6 iPS Young2012_exp3-2


text: Cancer Research UK Cambridge Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: E2F4; sc-866 (santa cruz) Lot-(A2804)

characteristic: antibody

characteristic: cell line

characteristic: library id

text: Homo sapiens

characteristic: organism

characteristic: title

text: MCF7 cells in complete DMEM media treated with 100nm Tamoxifen for 48hrs

characteristic: treatment


characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: E2F4; sc-866 (santa cruz) Lot-(A2804)

text: Homo sapiens

text: MCF7 cells in complete DMEM media treated with 100nm ICI 182780 for 48hrs


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: INPUT

text: INPUT

text: Input


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: ER; sc-534 (santa cruz) Lot-(HC-20)

text: Homo sapiens

text: MCF7 cells in Complete DMEM media


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: GREB1; ab72999 (abcam) Lot-(ab12563)

text: Homo sapiens

text: MCF7 cells in Complete DMEM media (rep1)


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: GREB1; ab72999 (abcam) Lot-(ab12563)

text: Homo sapiens

text: MCF7 cells in Complete DMEM media and 4 hours of 100nM ICI 182780(rep1)


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: GREB1; ab72999 (abcam) Lot-(ab12563)

text: Homo sapiens

text: MCF7 cells in Complete DMEM media (rep2)


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: GREB1; ab72999 (abcam) Lot-(ab12563)

text: Homo sapiens

text: MCF7 cells in Complete DMEM media and 4 hours of 100nM ICI 182780(rep2)


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: ER; sc-534 (santa cruz) Lot-(HC-20)

text: Homo sapiens

text: MCF7 xenograft tumour in mouse


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: GREB1; HPA024616 (sigma)Lot-(A57971)

text: Homo sapiens

text: MCF7 xenograft tumour in mouse


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: COT2; R&D systems PP-H7147-00-Lot(A2)

text: Homo sapiens

text: MCF7 cells in Complete DMEM media


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: KLF4; R&D systems AF3640-Lot(xvh0310101)

text: Homo sapiens

text: MCF7 cells in Complete DMEM media


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: IgG; sc-2027 (santa cruz)-Lot(c2712)

text: Homo sapiens

text: MCF7 cells in Complete DMEM media


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: RXRA; sc-553 (santa cruz)-Lot(E0411)

text: Homo sapiens

text: MCF7 cells in Complete DMEM media


text: Cancer Research UK Cambridge Institute

text: live

text: Generic

text: TLE3; ab94972(abcam)-Lot(GR54354-1)

text: Homo sapiens

text: MCF7 cells in Complete DMEM media


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: human gut metagenome

characteristic: sample name

text: Generic sample from unclassified Bacteria (miscellaneous)


text: Genome Research Foundation

characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens


text: Institute of Biochemistry, Zhejiang Sci-Tech University, Hangzhou 310018, China

text: live

characteristic: INSDC status

text: Generic

text: Grace's insert medium

characteristic: biome

text: Bombyx mori ovarian BmN cell line

characteristic: body site

text: Ovarian cell

characteristic: cell type

text: BmN

characteristic: cell-line

characteristic: collection date

text: The sample Bombyx mori Argonaute2 complexes was used to separate the binding small RNAs by RIP-seq method and the size ranged from 18-nt to 50-nt.

characteristic: description

text: China

characteristic: geo loc name

text: Bombyx mori BmN cells

characteristic: isolate

text: Bombyx mori Argonaute2 was expressed with HIS flag in BmN cells, and the fused HIS-Argonaute2 complexes was immunoprecipitated by HIS monoclonal antibody

characteristic: isolation-source

text: BmN cells

characteristic: label

text: Bombyx mori

text: Bombyx mori

characteristic: specific host

text: General Sample for Bombyx mori Argonaute2 immunoprecipitated complexes


characteristic: External Id

text: Biological Sciences, University of Missouri

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: biological replicate

text: female

characteristic: gender

text: Control

characteristic: genotype/variation

text: Drosophila melanogaster

characteristic: organism

text: adult flies

text: Control Female (CF1)

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: female

text: Control

text: Drosophila melanogaster

text: adult flies

text: Control Female (CF2)


text: live

text: Generic

text: female

text: Control

text: Drosophila melanogaster

text: adult flies

text: Control Female (CF3)


text: live

text: Generic

text: male

text: Control

text: Drosophila melanogaster

text: adult flies

text: Control Male (CM1)


text: live

text: Generic

text: male

text: Control

text: Drosophila melanogaster

text: adult flies

text: Control Male (CM2)


text: live

text: Generic

text: male

text: Control

text: Drosophila melanogaster

text: adult flies

text: Control Male (CM3)


text: live

text: Generic

text: female

text: ectopically expressed MSL2 protein

text: Drosophila melanogaster

text: adult flies

text: H83M2 Female (HMF1)


text: live

text: Generic

text: female

text: ectopically expressed MSL2 protein

text: Drosophila melanogaster

text: adult flies

text: H83M2 Female (HMF2)


text: live

text: Generic

text: female

text: ectopically expressed MSL2 protein

text: Drosophila melanogaster

text: adult flies

text: H83M2 Female (HMF3)


text: live

text: Generic

text: male

text: ectopically expressed MSL2 protein

text: Drosophila melanogaster

text: adult flies

text: H83M2 Male (HMM1)


text: live

text: Generic

text: male

text: ectopically expressed MSL2 protein

text: Drosophila melanogaster

text: adult flies

text: H83M2 Male (HMM2)


text: live

text: Generic

text: male

text: ectopically expressed MSL2 protein

text: Drosophila melanogaster

text: adult flies

text: H83M2 Male (HMM3)


text: STRI/NCSU

text: live

text: Generic

text: Peru

characteristic: geo loc name

text: eukaryote

characteristic: investigation type

text: Heliconius timareta spp. n. MAS-2012

text: Generic sample from Heliconius timareta spp. n. MAS-2012


text: Geneva University Hospitals

text: live

text: Generic

text: Staphylococcus aureus strain MW2

characteristic: description

text: Staphylococcus aureus MW2

characteristic: strain

text: General Sample for Staphylococcus aureus


Pyronema confluens genomic DNA

characteristic: External Id

text: Ruhr-University Bochum

characteristic: INSDC center name

text: live

text: Generic

text: Genomic DNA was extracted from vegetative hyphae of Pyronema confluens

text: Pyronema omphalodes CBS 100304

text: Pyronema confluens genomic DNA


454 reads from DSS experiment

text: University of Vienna

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Bacteria

text: Pooled 16S rRNA gene sequences


text: Allen Institute

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: cell line

text: E. coli DNA Adenine Methyltransferase

characteristic: expressing protein

text: Mus musculus

text: 3T3 fibroblasts

text: 3T3MEF-Dam rep 1


text: Allen Institute

text: live

text: Generic

text: E. coli DNA Adenine Methyltransferase

text: Mus musculus

characteristic: organism

text: 3T3 fibroblasts

text: 3T3MEF-Dam rep 2


text: Allen Institute

text: live

text: Generic

text: E. coli DNA Adenine Methyltransferase tethered to mouse Lamin B1

text: Mus musculus

text: 3T3 fibroblasts

text: 3T3MEF-LmnB1 rep 1

characteristic: title


text: Allen Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mus musculus

text: 3T3 fibroblasts

text: 3T3MEF-LmnB1 rep 2


text: Allen Institute

text: live

characteristic: INSDC status

text: Generic

text: E. coli DNA Adenine Methyltransferase

text: Mus musculus

text: C2C12 myoblasts

text: C2C12MB-Dam rep 1


text: Allen Institute

text: live

text: Generic

characteristic: NCBI submission model

text: E. coli DNA Adenine Methyltransferase

text: Mus musculus

text: C2C12 myoblasts

text: C2C12MB-Dam rep 2


text: Allen Institute

text: live

text: Generic

text: E. coli DNA Adenine Methyltransferase tethered to mouse Lamin B2

text: Mus musculus

text: C2C12 myoblasts

text: C2C12MB-LmnB1 rep 1


text: Allen Institute

text: live

text: Generic

text: Mus musculus

text: C2C12 myoblasts

text: C2C12MB-LmnB1 rep 2


Irina II - 16S - Sample A

text: University of Hamburg

text: live

text: Generic

text: Environmental sample from hydrothermal vent at Logatchev field in the Mid-Atlantic Ridge Sample A was collected roughly 3 meters away from the main Irina II structure, at the same exact location as Sample B, roughly 20 cm away from Sample C.

text: hydrothermal vent metagenome


Irina II - 16S - Sample B

text: University of Hamburg

text: live

text: Generic

text: Environmental sample from hydrothermal vent at Logatchev field in the Mid-Atlantic Ridge Sample B was collected roughly 3 meters away from the main Irina II structure, at the same exact location as Sample A, roughly 20 cm away from Sample C.

text: hydrothermal vent metagenome


Irina II - 16S - Sample C

text: University of Hamburg

text: live

text: Generic

text: Environmental sample from hydrothermal vent at Logatchev field in the Mid-Atlantic Ridge Sample C was collected roughly 3 meters away from the main Irina II structure, roughly 20 cm away from Sample A and B.

text: hydrothermal vent metagenome


Irina II - 16S - Sample D

text: University of Hamburg

text: live

text: Generic

text: Environmental sample from hydrothermal vent at Logatchev field in the Mid-Atlantic Ridge Sample D was collected at Irina II's base.

text: hydrothermal vent metagenome


Irina II - 16S - Sample E

text: University of Hamburg

text: live

text: Generic

text: Environmental sample from hydrothermal vent at Logatchev field in the Mid-Atlantic Ridge Sample E was collected from the hydrothermal plume 175 m above the ground of Irina II.

text: hydrothermal vent metagenome


text: Instituto de Agroquímica y Tecnología de Alimentos. Consejo Superior de Investigaciones Científicas (IATA-CSIC)

text: live

text: Generic

text: Navelina

characteristic: cultivar

text: We analyzed the transcriptome of both orange fruits and Penicillium digitatum during the interaction using Dual RNA-Seq. RNA-Seq data were generated from four different cDNA libraries: a library was synthesized from a mixture of RNAs from P. digitatum spores collected after 7 days of growth in potato dextrose agar and control non-wounded oranges, and three libraries from P. digitatum-infected oranges at 12, 24, and 48 h post inoculation, respectively. Fruit inoculation and RNA extraction were conducted following procedures previously described by Ballester et al (2006). cDNA libraries were generated using the MINT-Universal cDNA synthesis kit (Evrogen) following the manufacturer’s protocol. Sequencing was carried out using the Roche 454 GS FLX Titanium system.

text: Spain: Valencia

characteristic: geo loc name

characteristic: isolate

text: Penicillium digitatum

text: Citrus sinensis

characteristic: specific host

text: infected orange fruit

characteristic: tissue-type

text: General Sample for Penicillium digitatum-infected orange fruits


name: Penicillium digitatum-infected orange fruits

characteristic: External Id

text: Instituto de Agroquimica y Tecnología de Alimentos. Consejo Superior de Investigaciones Cientificas (IATA-CSIC)

characteristic: INSDC center name

text: live

text: Generic

characteristic: description

text: Penicillium digitatum Pd1

text: Dual RNA-Seq of Penicillium digitatum spores and health Citrus sinensis cv Navelina orange fruits (nd0)


EN

text: National Institute of Allergy and Infectious Diseases

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: Ixodes ricinus nymphal ticks were fed for 0 and 1 days on guinea pigs, rabbits and mice. In rabbits, ticks were also co-feeding with adult ticks.

text: Ixodes ricinus

text: Early feeding nymph salivary gland


LN

text: live

text: Generic

characteristic: SRA accession

text: Ixodes ricinus nymphal ticks were fed for 2 or more days days on guinea pigs, rabbits and mice. In rabbits, ticks were also co-feeding with adult ticks.

text: Ixodes ricinus

text: Late feeding nymph salivary gland


text: Centre for Genomic Regulation

text: live

text: Generic

text: H3K36me3 - Abcam, #9050

characteristic: antibody

characteristic: cell line

text: embryonic stem cells

characteristic: cell type

text: wild type

characteristic: genotype/variation

text: Mus musculus

characteristic: organism


text: Centre for Genomic Regulation

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: H3K36me2 - Abcam, #9049

text: embryonic stem cells

text: wild type

text: Mus musculus

characteristic: title


text: Centre for Genomic Regulation

text: live

text: Generic

text: Suz12 - Abcam, #12073

text: embryonic stem cells

text: wild type

text: Mus musculus


text: Centre for Genomic Regulation

text: live

text: Generic

text: H3K27me3 - Millipore, #07449

text: embryonic stem cells

text: wild type

text: Mus musculus


text: Centre for Genomic Regulation

text: live

text: Generic

text: H3K27me3 - Millipore, #07450

text: embryonic stem cells

text: Mus musculus


text: Centre for Genomic Regulation

text: live

text: Generic

text: IgG; Abcam, #46540

text: embryonic stem cells

text: wild type

text: Mus musculus


text: Centre for Genomic Regulation

text: live

text: Generic

text: Phf19 - OpenBiosystems, costum made

text: embryonic stem cells

text: wild type

text: Mus musculus


EA

text: live

text: Generic

text: Ixodes ricinus adult female ticks were fed for 0 (unfed), 1 and 2 days on guinea pigs and rabbits. In rabbits, ticks were also co-feeding or not with adult ticks.

text: Ixodes ricinus

text: Early feeding adult female salivary glands


LA

text: live

text: Generic

text: Ixodes ricinus adult female ticks were fed for 3 or more days (up to detachment) on guinea pigs and rabbits. In rabbits, ticks were also co-feeding or not with adult ticks.

text: Ixodes ricinus

text: Late feeding adult female salivary glands


text: CDFD

text: live

text: Generic

text: Escherichia coli

text: Wild-type (GJ6504)


XCC resequencing P

text: UNIVERSITY OF FLORIDA

text: live

text: Generic

text: Xanthomonas citri pv. citri

text: PARENT


text: live

text: Generic

text: Penicillium digitatum Pd1

text: Dual RNA-Seq during oranges-Penicillium digitatum interaction: 12 hours post inoculation


text: Menke, Genetics, University of Georgia

text: live

text: Generic

characteristic: age

text: Pitx1 (Santa Cruz, sc-18922, lot # G0105 )

characteristic: chip antibody

text: wild type

characteristic: genotype

text: Mus musculus

text: embryonic hindlimb

text: ICR

characteristic: strain

text: embryonic hindlimb bud

characteristic: tissue


characteristic: External Id

text: Menke, Genetics, University of Georgia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: wild type

text: Mus musculus

text: embryonic hindlimb

text: ICR

text: embryonic hindlimb bud


text: Jan Michael Peters' Lab, IMP - Research Institute of Molecular Pathology

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: embryonic fibroblast

text: rabbit anti-Smc3

text: Bethyl

characteristic: chip antibody manufacturer

text: mixed C57BL/6 and 129 background

characteristic: genetic background

text: Wapl +/delta

text: Mus musculus

text: mouse embryonic fibroblasts

text: Smc3 Wapl +/delta rep1


characteristic: INSDC secondary accession

text: live

text: Generic

text: embryonic fibroblast

characteristic: cell type

text: rabbit anti-Smc3

text: Bethyl

text: mixed C57BL/6 and 129 background

text: Wapl -/delta

text: Mus musculus

characteristic: organism

text: mouse embryonic fibroblasts

text: Smc3 Wapl -/delta rep1


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: embryonic fibroblast

text: rabbit anti-Smc3

text: Bethyl

text: mixed C57BL/6 and 129 background

text: Wapl +/delta

text: Mus musculus

text: mouse embryonic fibroblasts

text: Smc3 Wapl +/delta rep2

characteristic: title


text: live

text: Generic

text: embryonic fibroblast

text: rabbit anti-Smc3

characteristic: chip antibody

text: Bethyl

text: mixed C57BL/6 and 129 background

text: Wapl -/delta

characteristic: genotype

text: Mus musculus

text: mouse embryonic fibroblasts

text: Smc3 Wapl -/delta rep2


text: live

text: Generic

text: embryonic fibroblast

text: rabbit anti-Smc3

text: Bethyl

text: mixed C57BL/6 and 129 background

text: Wapl +/delta

text: Mus musculus

text: mouse embryonic fibroblasts

text: Whole Cell Extract Wapl +/delta


text: live

text: Generic

text: embryonic fibroblast

text: rabbit anti-Smc3

text: Bethyl

text: mixed C57BL/6 and 129 background

text: Wapl -/delta

text: Mus musculus

text: mouse embryonic fibroblasts

text: Whole Cell Extract Wapl -/delta


text: live

text: Generic

text: embryonic fibroblast

text: rabbit anti-CTCF

text: Upstate

text: mixed C57BL/6 and 129 background

text: Wapl +/delta

text: Mus musculus

text: mouse embryonic fibroblasts

text: CTCF Wapl +/delta


text: live

text: Generic

text: embryonic fibroblast

text: rabbit anti-CTCF

text: Upstate

text: mixed C57BL/6 and 129 background

text: Wapl +/delta

text: Mus musculus

text: mouse embryonic fibroblasts

text: CTCF Wapl -/delta


name: GENOME RESEQUENCING OF XANTHOMONAS CITRI

text: CITRUS RESEARCH AND EDUCATION CENTER

text: live

text: Generic

text: The strain causes citrus canker disease and has been stored in glycerol stock at -80C in our laboratory

characteristic: description

text: Xanthomonas citri pv. citri

text: EXPERIMENTAL EVOLUTION OF XCC


name: Cow 2155_control diet (Rumen metatranscriptome)

characteristic: External Id

text: Aarhus University, Denmark

text: live

text: Generic

text: Metatranscriptomes of rumen fluid from Holstein dairy cows created using Illumina HiSeq2000 PE sequencing technology.

text: bovine gut metagenome

text: Rumen metatranscriptomics


text: Duke University

characteristic: INSDC center name

text: live

text: Generic

text: anti-Flag M2

characteristic: antibody

characteristic: cell line

text: EBV B95-8-infected lymphoblastoid cells

characteristic: immunoprecipitated protein

text: Homo sapiens

text: 4-thiouridine / 365 nm

characteristic: photoactivatable ribonucleoside analog and crosslinking wavelength

text: EBV+ LCL

text: EF3DAGO2, Ago2-FLAG PAR-CLIP


text: Duke University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Anti-Ago2 (clone 9E8)

text: EBV B95-8-infected lymphoblastoid cells

text: Homo sapiens

text: 4-thiouridine / 365 nm

text: EBV+ LCL

text: LCL35, Ago2 PAR-CLIP


text: Duke University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Anti-Ago2 (clone 9E8)

text: LCL-BAC

text: EBV B95-8-infected lymphoblastoid cells

characteristic: cell type

text: Homo sapiens

characteristic: organism

text: 4-thiouridine / 365 nm

text: EBV+ LCL

text: LCLBAC, Ago2 PAR-CLIP


text: Duke University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Anti-Ago2 (clone 9E8)

text: EBV B95-8-infected lymphoblastoid cells

text: Homo sapiens

text: 4-thiouridine / 365 nm

text: EBV+ LCL

text: LCLBACD1, Ago2 PAR-CLIP

characteristic: title


text: Duke University

text: live

text: Generic

text: Anti-Ago2 (clone 9E8)

text: EBV B95-8-infected lymphoblastoid cells

text: Homo sapiens

text: 4-thiouridine / 365 nm

text: EBV+ LCL

text: LCLBACD3, Ago2 PAR-CLIP


text: Duke University

text: live

text: Generic

text: EBV B95-8-infected lymphoblastoid cells

text: Homo sapiens

text: EBV+ LCL

text: EF3DAGO2, small RNA sequencing


text: Duke University

text: live

text: Generic

text: EBV B95-8-infected lymphoblastoid cells

text: Homo sapiens

text: EBV+ LCL

text: LCL35, small RNA sequencing


text: Duke University

text: live

text: Generic

text: LCL-BAC

text: EBV B95-8-infected lymphoblastoid cells

text: Homo sapiens

text: EBV+ LCL

text: LCLBAC, small RNA sequencing


text: Duke University

text: live

text: Generic

text: EBV B95-8-infected lymphoblastoid cells

text: Homo sapiens

text: EBV+ LCL

text: LCLBACD1, small RNA sequencing


text: Duke University

text: live

text: Generic

text: EBV B95-8-infected lymphoblastoid cells

text: Homo sapiens

text: EBV+ LCL

text: LCLBACD3, small RNA sequencing


text: Duke University

text: live

text: Generic

text: SDLCL

text: EBV B95-8-infected lymphoblastoid cells

text: Homo sapiens

text: EBV+ LCL

text: SDLCL, small RNA sequencing


mixed metacyclics

text: Yale School of Public Health

text: live

text: Generic

text: RNA samples from metacyclic-containing cultures were used to generate and sequence Illumina libraries.

characteristic: description

text: Trypanosoma brucei brucei

text: RBP6-induced mixed metacyclic culture


characteristic: External Id

text: Van Andel Institute

text: live

text: Generic

text: Canis lupus familiaris

text: Canine B-cell lymphoma dog


Pineal gland

text: Tel Aviv University

characteristic: INSDC center name

text: live

text: Generic

text: Adult (0.5-1.5 years old) transgenic zebrafish, Tg(aanat2:EGFP)Y8, which express enhanced green fluorescent protein (EGFP) in the pineal gland under the control of the aanat2 regulatory regions, were used. Fish were raised under 12-hr light:12-hr dark (LD) cycles, in a temperature controlled room, and transferred to constant darkness (DD) for tissue collection. Fish were anesthetized in 1.5 mM Tricane (Sigma), sacrificed by decapitation, and pineal glands were removed under a fluorescent dissecting microscope. Starting from circadian time (CT) 14, pineal glands were collected at 4-hr intervals for 48 hours (12 time points identified as CT 14, 18, 22, 2, 6, 10, 14b, 18b, 22b, 2b, 6b and 10b). Pools of 20 pineal glands were prepared at each time-point and total RNA was extracted using the RNeasy Lipid Tissue Mini Kit (QIAGEN), according to the manufacturer's instructions. Illumina TruSeq protocol was used to prepare libraries from RNA samples. Overall, 12 libraries (12 time points) were run on 2 lanes of Illumina HiSeq2000 machine using the multiplexing strategy of the TruSeq protocol (Institute of Applied Genomics). On average, ~30 million paired-end reads were obtained for each library. The reads were 2 x 100 base pairs for 8 time points (CTs 22, 2, 6, 10, 18b, 2b, 6b, 10b) and 2 x 50 base pairs for the remaining time points (CTs 14, 18, 14b and 22b).

text: Danio rerio

text: Zebrafish pineal gland


text: The Chinese University of Hong Kong

text: live

text: Generic

text: HKCI-4 small ncRNA sequencing

text: Homo sapiens

text: HKCI-4 liver cancer cell