status: PUBLIC

characteristic: External Id

text: Epigenetics Group

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Mus musculus

characteristic: organism

text: The C57BL6 mouse (Mus musculus; Japan SLC) were kept under a lighting regime of 14 h illumination and 10 h darkness (lights on between 05:00 and 19:00 h) and were allowed free access to food and water. The total RNAs were isolated from the C57BL6 mouse cerebral cortex with TRIzol (Life Technologies). Total RNA was selected twice with Sera-Mag Magnetic Oligo(dT) Beads (Thermo Scientific) to isolate poly(A)+ RNA.

tag: attribute

characteristic: sample comment

characteristic: sample name

text: C57BL6 mouse male cerebral cortex poly(A)+ RNA

characteristic: title


text: Epigenetics Group

text: live

text: Generic

text: Mus musculus

text: The C57BL6 mouse (Mus musculus; Japan SLC) were kept under a lighting regime of 14 h illumination and 10 h darkness (lights on between 05:00 and 19:00 h) and were allowed free access to food and water. The total RNAs were isolated from the C57BL6 mouse heart with TRIzol (Life Technologies). Total RNA was selected twice with Sera-Mag Magnetic Oligo(dT) Beads (Thermo Scientific) to isolate poly(A)+ RNA.

text: C57BL6 mouse male heart poly(A)+ RNA


text: Epigenetics Group

text: live

text: Generic

text: Pan troglodytes

text: Thanks to the Great Ape Information Network (GAIN) and Kumamoto Sanctuary,Wildlife Research Center, Kyoto University, the BA10 area was collected from a chimpanzee (Pan troglodytes; ~28 year-old female). The total RNAs were isolated from the chimpanzee BA10 with TRIzol (Life Technologies). Total RNA was selected twice with Sera-Mag Magnetic Oligo(dT) Beads (Thermo Scientific) to isolate poly(A)+ RNA.

text: Chimpanzee female BA10 poly(A)+ RNA


text: Epigenetics Group

text: live

text: Generic

text: Pan troglodytes

text: Thanks to the Great Ape Information Network (GAIN) and Kumamoto Sanctuary,Wildlife Research Center, Kyoto University, the cerebellum was collected from a chimpanzee (Pan troglodytes; ~28 year-old female). The total RNAs were isolated from the chimpanzee cerebellum with TRIzol (Life Technologies). Total RNA was selected twice with Sera-Mag Magnetic Oligo(dT) Beads (Thermo Scientific) to isolate poly(A)+ RNA.

text: Chimpanzee female cerebellum poly(A)+ RNA


text: Epigenetics Group

text: live

text: Generic

text: Mus musculus

text: The C57BL6 mouse (Mus musculus; Japan SLC) were kept under a lighting regime of 14 h illumination and 10 h darkness (lights on between 05:00 and 19:00 h) and were allowed free access to food and water. The total RNAs were isolated from the C57BL6 mouse cerebellum with TRIzol (Life Technologies). Total RNA was selected twice with Sera-Mag Magnetic Oligo(dT) Beads (Thermo Scientific) to isolate poly(A)+ RNA.

text: C57BL6 mouse male cerebellum poly(A)+ RNA


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

text: Mus musculus

text: ISCE-I plasmid (NIH 3T3 cells transfected with repeat locus, integrated into cells (NIH 2/4). Transfected with ISCE-I plasmid to cause DNA damage. barcode ... GAAA), ISCE-I plasmid treated with shDicer (NIH 3T3 cells transfected with repeat locus, integrated into cells (NIH 2/4). Transfected with ISCE-I plasmid to cause DNA damage followed by shDicer. barcode ... AAAA), ISCE-I plasmid treated with shDrosha (NIH 3T3 cells transfected with repeat locus, integrated into cells (NIH 2/4). Transfected with ISCE-I plasmid to cause DNA damage followed by shDrosha. barcode ... CAAA)

text: ISCE-I plasmid, ISCE-I plasmid treated with shDicer, ISCE-I plasmid treated with shDrosha


text: live

text: Generic

text: Mus musculus

text: plKO empty vector (NIH 3T3 cells transfected with repeat locus, integrated into cells (NIH 2/4). Transfected with plKO empty vector. barcode ... GAAA), plKO empty vector treated with shDicer (NIH 3T3 cells transfected with repeat locus, integrated into cells (NIH 2/4). Transfected with plKO empty vector followed by shDicer. barcode ... AAAA), plKO empty vector treated with shDrosha (NIH 3T3 cells transfected with repeat locus, integrated into cells (NIH 2/4). Transfected with ISCE-I plasmid to cause DNA damage. barcode ... CAAA)

text: plKO empty vector, plKO empty vector treated with shDicer, plKO empty vector treated with shDrosha


text: live

text: Generic

text: Mus musculus

text: DDR not restored ( RNAse treatment of NIH 2/4 cells transfect short nuclear RNA (<200b) from 3T3 cells transfected with ISCE-I. barcode ... AAAA), DDR may be restored ( RNAse treatment of NIH 2/4 cells transfect short nuclear RNA (<200b) from NIH 2/4 cells not transfected with ISCE-I. barcode ... CAAA), DDR restored( RNAse treatment of NIH 2/4 cells transfect short nuclear RNA (<200b) from NIH 2/4 cells transfected with ISCE-I. barcode ... GAAA)

text: DDR not restored, DDR may be restored, DDR restored


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens


text: Devision of Insect Sciences, National Institute of Agrobiological Sciences

text: live

text: Generic

text: Nilaparvata lugens

text: Chikugo-89 was collected in Chikugo, Fukuoka Prefecture, in 1989 and has been maintained in a laboratory colony for more than 250 generations.

text: Inbred clony of Chikugo-89 strain of Nilaparvata lugens


text: live

text: Generic

text: Nilaparvata lugens

text: Hadano-66 was collected in Hadano, Kanagawa Prefecture, in 1966 and has been maintained in a laboratory colony for approximately 500 generations

text: Inbred clony of Hadano-66 strain of Nilaparvata lugens


text: live

text: Generic

characteristic: cell line

text: Homo sapiens


text: live

text: Generic

characteristic: note

text: Homo sapiens

text: source: Fetal Brain; description: Oligo capped transcriptional start site library.


text: lymphoblastoid cell line

characteristic: Cell line

characteristic: HapMap sample ID

text: Laboratory for Medical Informatics, Center for Genomic Medicine, Yokohama Institute, RIKEN

text: live

text: Generic

text: Homo sapiens

text: Japanese

characteristic: population

text: HapMap-JPT NA18943

text: Whole genome sequence of HapMap NA18943


characteristic: External Id

text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

characteristic: INSDC center name

text: live

text: Generic

text: Wild Caught

characteristic: description

text: juvenile

characteristic: dev stage

text: Tanzania

characteristic: geo loc name

characteristic: isolate

text: Latimeria chalumnae

text: muscle

characteristic: tissue type

text: Genome from muscle of Tanzanian coelacanth Latimeria chalumnae.


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Salmonella enterica subsp. enterica serovar Typhimurium str. T000240

text: Typhimurium

characteristic: serovar

characteristic: strain

text: enterica

characteristic: subsp.


characteristic: External Id

text: FGG, Center for Gene Research, Nagoya University

text: live

text: Generic

text: Vibrio alginolyticus

characteristic: organism

text: 454 pyrosequencing

characteristic: sample comment

characteristic: sample name

characteristic: title


text: Division of Parasitology, Department of Infectious Diseases, Faculty of Medicine, University of Miyazaki

characteristic: INSDC center name

text: live

text: Generic

text: Strongyloides venezuelensis

text: LL3 stage


text: live

text: Generic

text: Strongyloides venezuelensis

text: L3i stage


text: live

text: Generic

text: Strongyloides venezuelensis

text: For_the _first_read


text: live

text: Generic

text: Strongyloides venezuelensis

text: Egg_L1 stage


text: live

text: Generic

text: Strongyloides venezuelensis

text: Parasitic adult stage


text: live

text: Generic

text: Strongyloides venezuelensis


text: live

text: Generic

characteristic: cell line

text: Mus musculus


text: Division of Biomedical Food Research, National Institute of Health Sciences

characteristic: INSDC first public

text: live

text: Generic

text: Listeria monocytogenes 690

text: Whole Genome Sequence of L. monocytogenes strain 690

text: L. monocytogenes strain 690


characteristic: INSDC last update

text: live

text: Generic

text: Listeria monocytogenes

text: Comparative Whole Genome Sequence analysis of L. monocytogenes strains 668 and 690. The strain 668 was originated from food and the strain 690 was from patient in the foodborne outbreak occurred in Japan in 2001.

text: Comparative genomics of L. monocytogenes strains 668 and 690


characteristic: INSDC secondary accession

text: live

text: Generic

text: Listeria monocytogenes 668

text: Whole Genome Sequence of L. monocytogenes strain 668

text: L. monocytogenes strain 668


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

characteristic: INSDC status

text: Generic

text: myoblast cells

characteristic: cell type

text: Mus musculus

text: source: C2C12 cells

text: C2C12_Growth lot2


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: note

text: Homo sapiens

text: source: Clonetech Kidney; description: Oligo capped transcriptional start site library.


text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens


text: Applied Biochemistry, Konkuk University

text: live

text: Generic

text: Corynebacterium glutamicum

text: Resequencing for SNP/InDel

characteristic: strain

text: Resequencing


characteristic: External Id

text: Geomicrobiology, Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology

text: live

text: Generic

text: marine sediment metagenome

text: Bacterial 16S rRNA gene from the core sample 1H-3_Matrix


text: live

text: Generic

text: marine sediment metagenome

characteristic: organism

text: Bacterial 16S rRNA gene from the core sample 1H-3_Coral


text: live

text: Generic

text: marine sediment metagenome

text: Bacterial 16S rRNA gene from the core sample 12H-3_Coral

characteristic: sample comment


text: live

text: Generic

text: marine sediment metagenome

text: DNA was extracted from coral fossils and sediment matrix and amplified by the primers targetting 16S rRNA of Archaea.

characteristic: sample name

text: Porcupine seabight Archaeal16S rRNA gene


text: live

text: Generic

text: marine sediment metagenome

text: Archaeal 16S rRNA gene from the core sample 1H-3_Matrix

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: marine sediment metagenome

text: Archaeal 16S rRNA gene from the core sample 1H-3_Coral


text: live

text: Generic

text: marine sediment metagenome

text: Bacterial 16S rRNA gene from the core sample 3H-3_Matrix


text: live

text: Generic

text: marine sediment metagenome

text: Bacterial 16S rRNA gene from the core sample 3H-3_Coral


text: live

text: Generic

text: marine sediment metagenome

text: DNA was extracted from coral fossils and sediment matrix and amplified by the primers targetting 16S rRNA of Bacteria.

text: Porcupine seabight Bacterial 16S rRNA gene


text: live

text: Generic

text: marine sediment metagenome

text: Archaeal 16S rRNA gene from the core sample 12H-3_Coral


text: live

text: Generic

text: marine sediment metagenome

text: Archaeal 16S rRNA gene from the core sample 3H-3_Coral


text: live

text: Generic

text: marine sediment metagenome

text: Archaeal 16S rRNA gene from the core sample 3H-3_Matrix


text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Latimeria chalumnae

text: Genomic DNA from Tanzanian coelacanth Latimeria chalumnae, TCC037.


text: Laboratory for Biodiversity, Global COE Program, Division of Biological Sciences, Graduate School of Science, Kyoto University

text: live

text: Generic

text: Drosophila melanogaster

text: Drosophila melanogaster strain DM

text: Drosophila melanogaster strain DM


text: live

text: Generic

text: Drosophila melanogaster

text: Drosophila melanogaster strain LM

text: Drosophila melanogaster strain LM


text: Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences

text: live

text: Generic

text: Nipponbare

characteristic: cultivar

text: Oryza sativa Japonica Group

text: Regenerated plants (M3 generation) from cultured cells of rice


text: Microbial ecology Laboratory, Graduate School of Biology, Kyung Hee University

characteristic: INSDC first public

text: live

text: Generic

text: human gut metagenome

text: after 1st radiation of G sample


characteristic: INSDC last update

text: live

text: Generic

text: human gut metagenome

text: after 5th radiation of F sample


characteristic: INSDC secondary accession

text: live

text: Generic

text: human gut metagenome

text: before radiation of F sample


text: live

characteristic: INSDC status

text: Generic

text: human gut metagenome

text: after 1st radiation of F sample


text: live

text: Generic

text: human gut metagenome

text: after 1st radiation of A sample


text: live

text: Generic

text: human gut metagenome

text: after 5th radiation of C sample


text: live

text: Generic

text: human gut metagenome

text: after 5th radiation of G sample


text: live

text: Generic

text: human gut metagenome

text: before radiation of G sample


text: live

text: Generic

text: human gut metagenome

text: after radiation of G sample


text: live

text: Generic

text: human gut metagenome

text: before radiation of D sample


text: live

text: Generic

text: human gut metagenome

text: after radiation of A sample


text: live

text: Generic

text: human gut metagenome

text: after radiation of B sample


text: live

text: Generic

text: human gut metagenome

text: after 1st radiation of E sample


text: live

text: Generic

text: human gut metagenome

text: after 1st radiation of C sample


text: live

text: Generic

text: human gut metagenome

text: before radiation of E sample


text: live

text: Generic

text: human gut metagenome

text: after radiation of E sample


text: live

text: Generic

text: human gut metagenome

text: after 5th radiation of H sample


text: live

text: Generic

text: human gut metagenome

text: after 5th radiation of E sample


text: live

text: Generic

text: human gut metagenome

text: before radiation of B sample


text: live

text: Generic

text: human gut metagenome

text: before radiation of H sample


text: live

text: Generic

text: human gut metagenome

text: after 5th radiation of I sample


text: live

text: Generic

text: human gut metagenome

text: before radiation of I sample


text: live

text: Generic

text: human gut metagenome

text: after 5th radiation of A sample


text: live

text: Generic

text: human gut metagenome

text: after 5th radiation of D sample


text: live

text: Generic

text: human gut metagenome

text: after radiation of I sample


text: live

text: Generic

text: human gut metagenome

text: before radiation of A sample


text: live

text: Generic

text: human gut metagenome

text: after radiation of C sample


text: live

text: Generic

text: human gut metagenome

text: before radiation of C sample


text: live

text: Generic

text: human gut metagenome

text: after 1st radiation of I sample


text: live

text: Generic

text: human gut metagenome

text: after 5th radiation of B sample


text: live

text: Generic

text: human gut metagenome

text: after 1st radiation of D sample


text: live

text: Generic

text: human gut metagenome

text: after radiation of F sample


text: live

text: Generic

text: human gut metagenome

text: after radiation of D sample


text: live

text: Generic

text: human gut metagenome

text: Pyrosequences of gut microbiota

text: Impact of radiotherapy on gut microbiota


text: live

text: Generic

text: human gut metagenome

text: after 1st radiation of H sample


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

text: live

text: Generic

text: Salmonella enterica subsp. enterica serovar Typhimurium str. L-3553

text: Extended-spectrum cephalosporin (ESC) resistant Salmonella enterica serovar Typhimurium (ST) has been isolated from cattle in Hokkaido, Japan since 2004.

text: Typhimurium

characteristic: serovar

text: enterica

characteristic: sub species

text: WHole genome analysis of Salmonella Typhimurium L-3553


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Homo sapiens


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

characteristic: SRA accession

text: Rattus norvegicus

text: Biochain; RNA lot number:B203033; RNA Catalog number: Cat:R4434567-1, Rat whole body NC2-79

text: Rat whole body NC2-79


text: live

text: Generic

text: Homo sapiens

text: Human peripheral blood, seven donors, library J35-GA (replicate 2, part A)


text: live

text: Generic

text: Rattus norvegicus

text: Universal rat RNA (Biochain); RNA lot number:B203033; RNA Catalog number:


text: live

text: Generic

text: Rattus norvegicus

text: Biochain; RNA lot number:B203033; RNA Catalog number: Cat:R4434567-1, Rat whole body NC2-24

text: Rat whole body NC2-24


text: live

text: Generic

text: Homo sapiens

text: Donor 5, female and 72 years old


text: live

text: Generic

text: Homo sapiens

text: Donor 4, male and 70 years old


text: live

text: Generic

text: Homo sapiens

text: Donor 7, male and 55 years old


text: live

text: Generic

text: Rattus norvegicus

text: Biochain; RNA lot number:B203033; RNA Catalog number: Cat:R4434567-1, Rat whole body NC2-46

text: Rat whole body NC2-46


text: live

text: Generic

text: Homo sapiens

text: Donor 1, male and 67 years old


text: live

text: Generic

text: Homo sapiens

text: Donor 3, male and 76 years old


text: live

text: Generic

text: Homo sapiens

text: Human peripheral blood, seven donors, library J36-GA (replicate 2, part B)


text: live

text: Generic

text: Rattus norvegicus

text: Biochain; RNA lot number:B203033; RNA Catalog number: Cat:R4434567-1, Rat whole body NC2-63

text: Rat whole body NC2-63


text: live

text: Generic

text: Rattus norvegicus

text: Biochain; RNA lot number:B203033; RNA Catalog number: Cat:R4434567-1, Rat whole body NC2-36

text: Rat whole body NC2-36


text: live

text: Generic

text: Homo sapiens

text: Donor 2, female and 66 years old


text: live

text: Generic

text: Homo sapiens

text: Donor 6, female and 65 years old


text: live

text: Generic

text: Homo sapiens

text: Human peripheral blood, seven donors, library J38-GA (replicate 3)


text: live

text: Generic

text: Rattus norvegicus

text: Biochain; RNA lot number:B203033; RNA Catalog number: Cat:R4434567-1, Rat whole body NC2-04

text: Rat whole body NC2-04


text: live

text: Generic

text: Rattus norvegicus

text: Biochain; RNA lot number:B203033; RNA Catalog number: Cat:R4434567-1, Rat whole body NC2-92

text: Rat whole body NC2-92


text: live

text: Generic

text: Homo sapiens

text: Human peripheral blood, seven donors, library J33-GA (replicate 1)


text: live

text: Generic

text: Rattus norvegicus

text: Biochain; RNA lot number:B203033; RNA Catalog number: Cat:R4434567-1, Rat whole body NC2-31

text: Rat whole body NC2-31


text: live

text: Generic

characteristic: cell line

text: Mus musculus


characteristic: External Id

text: live

text: Generic

text: Mus musculus

text: mouse spamatozoa sRNA (with Illumina sequencer)


text: live

text: Generic

text: Mus musculus

characteristic: organism

text: mouse testis sRNA (with Illumina sequencer)


text: live

text: Generic

text: Mus musculus

text: mouse spamatozoa sRNA (with 454 sequencer)

characteristic: sample comment


text: Lab of Plant Genetic Resources, Department of Biological Resources Management, School of Environmental Science, University of Shiga Prefecture

text: live

text: Generic

text: Shigeo Takumi

characteristic: Submitters

text: Aegilops tauschii

text: RNA-seq from leaves of 21-d-old seedlings of Ae. taushcii PI476874.

characteristic: sample name

characteristic: strain

text: Aegilops tauschii PI476874


characteristic: INSDC center name

text: live

text: Generic

text: Shigeo Takumi

text: Aegilops tauschii

text: RNA-seq from leaves of 21-d-old seedlings of Ae. taushcii IG47182.

text: Aegilops tauschii IG47182

characteristic: title


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens


text: Genomic Drug Discovery Science, Graduate School of Pharmaceutical Sciences, Kyoto University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: SKBR3 Input sample


text: live

text: Generic

text: Homo sapiens

text: HMC18 MeDIP sample 1st


text: live

text: Generic

text: Homo sapiens

text: T47D Input sample


text: live

text: Generic

text: Homo sapiens

text: MCF7 MeDIP sample 3rd


text: live

text: Generic

text: Homo sapiens

text: MDAMB231 MeDIP sample 2nd


text: live

text: Generic

text: Homo sapiens

text: SKBR3 MeDIP sample 1st


text: live

text: Generic

text: Homo sapiens

text: Hs578T MeDIP sample 1st


text: live

text: Generic

text: Homo sapiens

text: Hs578T Input sample


text: live

text: Generic

text: Homo sapiens

text: MDAMB453 MeDIP sample


text: live

text: Generic

text: Homo sapiens

text: MCF7 MeDIP sample 2nd


text: live

text: Generic

text: Homo sapiens

text: MCF7 Input sample


text: live

text: Generic

text: Homo sapiens

text: EMT-induced MCF7 MeDIP sample 1st


text: live

text: Generic

text: Homo sapiens

text: HMC18 Input sample


text: live

text: Generic

text: HMEC

text: Homo sapiens

text: HMEC MeDIP sample 2nd


text: live

text: Generic

text: Homo sapiens

text: MCF7 MeDIP sample 4th


text: live

text: Generic

text: Homo sapiens

text: EMT-induced MCF7 MeDIP sample 2nd


text: live

text: Generic

text: HMEC

text: Homo sapiens

text: HMEC MeDIP sample 1st


text: live

text: Generic

text: Homo sapiens

text: T47D MeDIP sample 1st


text: live

text: Generic

text: Homo sapiens

text: MDAMB231 Input sample


text: live

text: Generic

text: HMEC

text: Homo sapiens

text: HMEC Input sample


text: live

text: Generic

text: Homo sapiens

text: MDAMB231 MeDIP sample 1st for paired-end read


text: live

text: Generic

text: Homo sapiens

text: MCF7 MeDIP sample 1st for paired-end read


text: live

text: Generic

text: Homo sapiens

text: MRKnu1 MeDIP sample 1st


text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: Homo sapiens


text: Arimura, Center for Ecological Research, Kyoto University

text: live

text: Generic

text: Cotesia vestalis

text: Non-amplified cDNAs from mRNA

text: mRNA and non-amplified


text: live

text: Generic

text: Cotesia vestalis

text: Amplified cDNAs from mRNA using Ovation RNA-Seq System

text: mRNA and amplified


text: live

text: Generic

text: Cotesia vestalis

text: Amplified cDNAs from total RNA using Ovation RNA-Seq System

text: Total RNA and amplified


text: live

text: Generic

text: Mus musculus


text: National Agriculture and Food Research Organization

text: live

text: Generic

text: Dianthus caryophyllus

text: Carnation (Dianthus caryophyllus L.) cultivar ‘Francesco’ The following plant tissues were used: flower bud, flower (day 0 [full open flower], 3 days after full open, 8 days after full open, 4-h ethylene treated [10 μl•l-1], 20-h ethylene treated [10 μl•l-1]), young and adult leaves, and stem (with shoot apex).

text: Carnation large scale EST


text: Microbial ecology Laboratory, Graduate School of Biology, Kyung Hee University

text: live

text: Generic

text: food metagenome

text: In the current study, changes in microbial dynamics during laboratory-scale fermentation of makgeolli inoculated with six different kinds of nuruk were evaluated by barcoded pyrosequencing using fungal- and bacterial-specific primers targeting the internal transcribed spacer 2 region and hypervariable regions V1 to V3 of the 16S rRNA gene, respectively.

text: A16 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: B12 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: C1 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: C8 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: A0 sample of fungal community


text: live

text: Generic

text: food metagenome

text: F0 sample of fungal community


text: live

text: Generic

text: food metagenome

text: Fungal community of traditional Korean alcoholic beverages


text: live

text: Generic

text: food metagenome

text: E2 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: D8 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: F2 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: AS sample of bacterial community


text: live

text: Generic

text: food metagenome

text: BS sample of bacterial community


text: live

text: Generic

text: food metagenome

text: A8 sample of fungal community


text: live

text: Generic

text: food metagenome

text: R1 sample of fungal community


text: live

text: Generic

text: food metagenome

text: R2 sample of fungal community


text: live

text: Generic

text: food metagenome

text: C0 sample of fungal community


text: live

text: Generic

text: food metagenome

text: B3 sample of fungal community


text: live

text: Generic

text: food metagenome

text: F3 sample of fungal community


text: live

text: Generic

text: food metagenome

text: D8 sample of fungal community


text: live

text: Generic

text: food metagenome

text: R4 sample of fungal community


text: live

text: Generic

text: food metagenome

text: C16 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: A3 sample of fungal community


text: live

text: Generic

text: food metagenome

text: A1 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: F12 sample of fungal community


text: live

text: Generic

text: food metagenome

text: E16 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: E0 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: R3 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: R1 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: E8 sample of fungal community


text: live

text: Generic

text: food metagenome

text: DS sample of fungal community


text: live

text: Generic

text: food metagenome

text: F8 sample of fungal community


text: live

text: Generic

text: food metagenome

text: E0 sample of fungal community


text: live

text: Generic

text: food metagenome

text: AS sample of fungal community


text: live

text: Generic

text: food metagenome

text: E3 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: C16 sample of fungal community


text: live

text: Generic

text: food metagenome

text: F2 sample of fungal community


text: live

text: Generic

text: food metagenome

text: F1 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: B2 sample of fungal community


text: live

text: Generic

text: food metagenome

text: A1 sample of fungal community


text: live

text: Generic

text: food metagenome

text: D1 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: F4 sample of fungal community


text: live

text: Generic

text: food metagenome

text: B0 sample of fungal community


text: live

text: Generic

text: food metagenome

text: D1 sample of fungal community


text: live

text: Generic

text: food metagenome

text: D12 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: A2 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: CS sample of bacterial community


text: live

text: Generic

text: food metagenome

text: E4 sample of fungal community


text: live

text: Generic

text: food metagenome

text: B0 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: F8 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: C2 sample of fungal community


text: live

text: Generic

text: food metagenome

text: E8 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: F3 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: F12 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: D2 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: D4 sample of fungal community


text: live

text: Generic

text: food metagenome

text: F0 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: D4 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: DS sample of bacterial community


text: live

text: Generic

text: food metagenome

text: E4 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: ES sample of bacterial community


text: live

text: Generic

text: food metagenome

text: D16 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: C4 sample of fungal community


text: live

text: Generic

text: food metagenome

text: F16 sample of fungal community


text: live

text: Generic

text: food metagenome

text: E2 sample of fungal community


text: live

text: Generic

text: food metagenome

text: B4 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: C4 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: D0 sample of fungal community


text: live

text: Generic

text: food metagenome

text: ES sample of fungal community


text: live

text: Generic

text: food metagenome

text: B1 sample of fungal community


text: live

text: Generic

text: food metagenome

text: R3 sample of fungal community


text: live

text: Generic

text: food metagenome

text: A12 sample of fungal community


text: live

text: Generic

text: food metagenome

text: BS sample of fungal community


text: live

text: Generic

text: food metagenome

text: B16 sample of fungal community


text: live

text: Generic

text: food metagenome

text: E12 sample of fungal community


text: live

text: Generic

text: food metagenome

text: D2 sample of fungal community


text: live

text: Generic

text: food metagenome

text: B16 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: Bacterial community of traditional Korean alcoholic beverages


text: live

text: Generic

text: food metagenome

text: E1 sample of fungal community


text: live

text: Generic

text: food metagenome

text: C3 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: D3 sample of fungal community


text: live

text: Generic

text: food metagenome

text: A16 sample of fungal community


text: live

text: Generic

text: food metagenome

text: B4 sample of fungal community


text: live

text: Generic

text: food metagenome

text: C12 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: A0 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: B8 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: A12 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: A3 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: E16 sample of fungal community


text: live

text: Generic

text: food metagenome

text: A4 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: B3 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: E1 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: C8 sample of fungal community


text: live

text: Generic

text: food metagenome

text: A4 sample of fungal community


text: live

text: Generic

text: food metagenome

text: C2 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: F1 sample of fungal community


text: live

text: Generic

text: food metagenome

text: C1 sample of fungal community


text: live

text: Generic

text: food metagenome

text: FS sample of fungal community


text: live

text: Generic

text: food metagenome

text: B2 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: D3 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: D12 sample of fungal community


text: live

text: Generic

text: food metagenome

text: D0 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: A2 sample of fungal community


text: live

text: Generic

text: food metagenome

text: C3 sample of fungal community


text: live

text: Generic

text: food metagenome

text: E3 sample of fungal community


text: live

text: Generic

text: food metagenome

text: F4 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: C0 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: C12 sample of fungal community


text: live

text: Generic

text: food metagenome

text: R4 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: A8 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: B8 sample of fungal community


text: live

text: Generic

text: food metagenome

text: R2 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: B12 sample of fungal community


text: live

text: Generic

text: food metagenome

text: FS sample of bacterial community


text: live

text: Generic

text: food metagenome

text: E12 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: F16 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: D16 sample of fungal community


text: live

text: Generic

text: food metagenome

text: B1 sample of bacterial community


text: live

text: Generic

text: food metagenome

text: CS sample of fungal community


text: Department of Gastroenterology and Hepatology, Graduate School of Medicine, Kyoto University

text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b isolated from Japanese chronic hepatitis C

text: Hepatitis C virus genotype 1b cDNA isolated from case22_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case27_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case14_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case01_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case06_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case05_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case18_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case10_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case15_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case03_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case04_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case09_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case21_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case08_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case13_posttreatment of Japanese chronic hepatitis C


text: Department of Gastroenterology and Hepatology, Graduate School of Medicine, Kyoto University

text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case24_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b isolated from Japanese chronic hepatitis C

text: Hepatitis C virus genotype 1b cDNA isolated from case12_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case15_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case08_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case16_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case26_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case05_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case17_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case23_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case02_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case14_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case07_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case19_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case16_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case06_pretreatment of Japanese chronic hepatitis C


text: Department of Gastroenterology and Hepatology, Graduate School of Medicine, Kyoto University

text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case01_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b isolated from Japanese chronic hepatitis C

text: Hepatitis C virus genotype 1b cDNA isolated from case12_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case09_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case13_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case11_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case02_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case03_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case04_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case20_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case10_posttreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case07_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case25_pretreatment of Japanese chronic hepatitis C


text: live

text: Generic

text: Hepatitis C virus subtype 1b

text: Hepatitis C virus genotype 1b cDNA isolated from case11_posttreatment of Japanese chronic hepatitis C


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: Mus musculus


text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: Homo sapiens

text: source: lung epithelial cells transfected control siRNA and non-stimulated with IL-4; description: Oligo capped transcriptional start site library.


text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells transfected with siControl (control siRNA) were incubated for 24 hours in the absence of BrU (chasing), followed by isolation of BrU-RNA by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: Con 24h


text: Central Research Laboratory, Shiga University of Medical Science

text: live

text: Generic

text: Canis lupus familiaris

text: Total RNA was extracted from the heart left ventricle muscles of a congestive heart failure dog.

text: familiaris

characteristic: sub species


text: live

text: Generic

characteristic: NCBI submission model

text: Canis lupus familiaris

text: Total RNA was extracted from the heart left ventricle muscles of a normal control dog.

text: familiaris


text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: source: TIG-3; description: chip_seq library.


text: Cancer Genomics Project, Faculty of Medicine University Hospital, The University of Tokyo

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: WHO Classification: RCMD tumor sample: Bone marrow normal sample: CD3+ T cell


text: live

text: Generic

text: Homo sapiens

text: WHO Classification: AML/MRC tumor sample: Periferal blood(CD3-) normal sample: CD3+ T-cell


text: live

text: Generic

text: Homo sapiens

text: WHO Classification: AML/MRC tumor sample: Bone marrow normal sample: CD3+ T cell


text: live

text: Generic

text: Homo sapiens

text: WHO Classification: RCMD tumor sample: Bone marrow normal sample: Buccal mocosa


text: live

text: Generic

text: Homo sapiens

text: WHO Classification: RAEB-1 tumor sample: Bone marrow normal sample: CD3+ T cell


text: live

text: Generic

text: Homo sapiens

text: WHO Classification: CMML1 tumor sample: Periferal blood(CD3-) normal sample: CD3+ T cell


text: live

text: Generic

text: Homo sapiens

text: WHO Classification: CMML2 tumor sample: Bone marrow normal sample: CD3+ T cell


text: live

text: Generic

text: Homo sapiens

text: WHO Classification: CMML1 tumor sample: Bone marrow normal sample: CD3+ T cell


text: live

text: Generic

text: Homo sapiens

text: WHO Classification: del(5q) tumor sample: Bone marrow normal sample: CD3+ T cell


text: live

text: Generic

text: Homo sapiens

text: WHO Classification: RAEB-2 tumor sample: Bone marrow normal sample: CD3+ T cell


text: live

text: Generic

text: Homo sapiens

text: WHO Classification: RA tumor sample: Bone marrow normal sample: CD3+ T cell


text: live

text: Generic

text: Homo sapiens

text: WHO Classification: AML/MRC tumor sample: Bone marrow normal sample: Buccal mocosa


text: Department of Bioinformatics, School of Medicine, Keio university

text: live

text: Generic

text: Oryzias latipes

text: Genomic DNA from Oryzias latipes Hd-rR

text: Hd-rR

text: Oryzias latipes Hd-rR strain genomic DNA


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

text: Generic

text: myoblast cells

characteristic: cell type

text: Mus musculus

text: source:C2C12 cells transfected mir3139 targeted Chd2


characteristic: External Id

text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

characteristic: cell line name

text: myoblast

text: Mus musculus

text: muscle

characteristic: tissue type


text: Chemosymbiosis system genomics Team, Extremobiosphere Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology

text: live

text: Generic

text: uncultured prokaryote

characteristic: organism

text: The microbial community structure in shallow sediment layer (5 cmbsf) of methane seep at the Nankai Trough was analyzed by small subunit (SSU) rRNA gene targeted tag-sequencing technique.

characteristic: sample comment

text: Microbial diversity in shallow sediment layer of deep-sea methane seep presented by SSU rRNA gene tag sequencing


text: live

text: Generic

text: uncultured prokaryote

text: The microbial community structure in deep sediment layers (25 cmbsf) of methane seep at the Nankai Trough was analyzed by small subunit (SSU) rRNA gene targeted tag-sequencing technique.

characteristic: sample name

text: Microbial diversity in deep sediment layer of deep-sea methane seep presented by SSU rRNA gene tag sequencing


text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

characteristic: INSDC center name

text: live

text: Generic

text: Latimeria menadoensis

text: Genomic DNA of Indonesian coelacanth Latimeria menadoensis.


text: Forest soil-13CO2-H2O-Day56-Fraction-4

characteristic: ACGATA

text: Forest soil-13CO2-H2O-Day56-Fraction-5

characteristic: ACGCAG

text: Forest soil-13CO2-H2O-Day56-Fraction-6

characteristic: ACGCGA

text: Forest soil-13CO2-H2O-Day56-Fraction-7

characteristic: ACGCGT

text: Forest soil-13CO2-H2O-Day56-Fraction-8

characteristic: ACGCTG

text: Forest soil-13CO2-H2O-Day56-Fraction-9

characteristic: ACGTAT

text: Tea orchard soil-Urea-13CO2-Day56-Fraction-9

characteristic: AGCATG

text: Forest soil-13CO2-H2O-C2H2-Day56-Fraction-4

characteristic: AGCGCA

text: Forest soil-13CO2-H2O-C2H2-Day56-Fraction-5

characteristic: AGCGCT

text: Forest soil-13CO2-H2O-C2H2-Day56-Fraction-6

characteristic: AGCGTC

text: Forest soil-13CO2-H2O-C2H2-Day56-Fraction-7

characteristic: AGCTAT

text: Forest soil-13CO2-H2O-C2H2-Day56-Fraction-8

characteristic: AGCTCG

text: Forest soil-13CO2-H2O-C2H2-Day56-Fraction-9

characteristic: AGCTGC

text: Forest soil-13CO2-Urea-Day28-Fraction-5

characteristic: CACAGC

text: Tea orchard soil-Urea-13CO2-Day56-Fraction-4

characteristic: CACATG

text: Tea orchard soil-Urea-13CO2-Day56-Fraction-5

characteristic: CACGAC

text: Tea orchard soil-Urea-13CO2-Day56-Fraction-6

characteristic: CACGAG

text: Tea orchard soil-Urea-13CO2-Day56-Fraction-7

characteristic: CACGAT

text: Tea orchard soil-Urea-13CO2-Day56-Fraction-8

characteristic: CACGTA

text: Tea orchard soil-Urea-12CO2-Day56-Fraction-4

characteristic: CACTAG

text: Tea orchard soil-Urea-12CO2-Day56-Fraction-9

characteristic: CACTAT

text: Tea orchard soil-Urea-12CO2-Day56-Fraction-5

characteristic: CAGACT

text: Tea orchard soil-Urea-12CO2-Day56-Fraction-6, Tea orchard soil-Urea-13CO2-C2H2-Day56-Fraction-4

characteristic: CAGAGC

text: Tea orchard soil-Urea-12CO2-Day56-Fraction-7, Tea orchard soil-Urea-13CO2-C2H2-Day56-Fraction-5

characteristic: CAGAGT

text: Tea orchard soil-Urea-12CO2-Day56-Fraction-8, Tea orchard soil-Urea-13CO2-C2H2-Day56-Fraction-6

characteristic: CAGATC

text: Forest soil-Urea-12CO2-Day56-Fraction-4, Tea orchard soil-Urea-13CO2-C2H2-Day56-Fraction-7

characteristic: CAGATG

text: Forest soil-Urea-12CO2-Day56-Fraction-5, Tea orchard soil-Urea-13CO2-C2H2-Day56-Fraction-8

characteristic: CAGCAC

text: Forest soil-Urea-12CO2-Day56-Fraction-6, Tea orchard soil-Urea-13CO2-C2H2-Day56-Fraction-9

characteristic: CAGCAG

text: Forest soil-Urea-12CO2-Day56-Fraction-7

characteristic: CAGCAT

text: Forest soil-Urea-12CO2-Day56-Fraction-8

characteristic: CAGCGA

text: Forest soil-Urea-12CO2-Day56-Fraction-9

characteristic: CAGCGC

text: Tea orchard soil-H2O-13CO2-Day56-Fraction-4

characteristic: CAGTAT

text: Tea orchard soil-H2O-13CO2-Day56-Fraction-5

characteristic: CAGTCA

text: Tea orchard soil-H2O-13CO2-Day56-Fraction-6

characteristic: CAGTCG

text: Tea orchard soil-H2O-13CO2-Day56-Fraction-7

characteristic: CAGTCT

text: Tea orchard soil-H2O-13CO2-Day56-Fraction-8

characteristic: CAGTGA

text: Tea orchard soil-H2O-13CO2-Day56-Fraction-9

characteristic: CAGTGC

text: Tea orchard soil-H2O-13CO2-C2H2-Day56-Fraction-4

characteristic: CATCTA

text: Tea orchard soil-H2O-13CO2-C2H2-Day56-Fraction-5

characteristic: CATCTC

text: Tea orchard soil-H2O-13CO2-C2H2-Day56-Fraction-6

characteristic: CATCTG

text: Tea orchard soil-H2O-13CO2-C2H2-Day56-Fraction-7

characteristic: CATGAC

text: Tea orchard soil-H2O-13CO2-C2H2-Day56-Fraction-8

characteristic: CATGAG

text: Tea orchard soil-H2O-13CO2-C2H2-Day56-Fraction-9

characteristic: CATGAT

text: Forest soil-Urea-13CO2-Day56-Fraction-4

characteristic: CGACGC

text: Forest soil-Urea-13CO2-Day56-Fraction-5

characteristic: CGACGT

text: Forest soil-Urea-13CO2-Day56-Fraction-6

characteristic: CGACTC

text: Forest soil-Urea-13CO2-Day56-Fraction-7

characteristic: CGACTG

text: Forest soil-Urea-13CO2-Day56-Fraction-9

characteristic: CGAGCA

text: Forest soil-13CO2-H2O-Day28-Fraction-4

characteristic: CGCATG

text: Forest soil-13CO2-H2O-Day28-Fraction-5

text: Forest soil-13CO2-H2O-Day28-Fraction-6

text: Forest soil-13CO2-H2O-Day28-Fraction-7

text: Forest soil-13CO2-H2O-Day28-Fraction-8

text: Forest soil-13CO2-H2O-Day28-Fraction-9

text: Forest soil-13CO2-Urea-C2H2-Day56-Fraction-4

text: Forest soil-13CO2-Urea-C2H2-Day56-Fraction-5

text: Forest soil-13CO2-Urea-C2H2-Day56-Fraction-6

text: Forest soil-13CO2-Urea-C2H2-Day56-Fraction-7

text: Forest soil-13CO2-Urea-C2H2-Day56-Fraction-8

text: Forest soil-13CO2-Urea-C2H2-Day56-Fraction-9

text: Tea orchard soil-Urea-13CO2-Day28-Fraction-4

text: Tea orchard soil-Urea-13CO2-Day28-Fraction-5

text: Tea orchard soil-Urea-13CO2-Day28-Fraction-6

text: Tea orchard soil-Urea-13CO2-Day28-Fraction-7

text: Tea orchard soil-Urea-13CO2-Day28-Fraction-8

text: Tea orchard soil-Urea-13CO2-Day28-Fraction-9

text: Tea orchard soil-H2O-13CO2-Day28-Fraction-4

text: Tea orchard soil-H2O-13CO2-Day28-Fraction-5, Tea orchard soil-H2O-13CO2-Day28-Fraction-6

text: Tea orchard soil-H2O-13CO2-Day28-Fraction-7

text: Tea orchard soil-H2O-13CO2-Day28-Fraction-8

text: Tea orchard soil-H2O-13CO2-Day28-Fraction-9

text: Forest soil-13CO2-Urea-Day28-Fraction-4

text: Forest soil-13CO2-Urea-Day28-Fraction-6

text: Forest soil-13CO2-Urea-Day28-Fraction-7

text: Forest soil-13CO2-Urea-Day28-Fraction-8

text: Forest soil-13CO2-Urea-Day28-Fraction-9

text: Forest soil-Urea-13CO2-Day56-Fraction-8

text: Soil Environment and Pollution Remediation Laboratory, Institute of Soil Science, Chinese Academy of Sciences

text: live

text: Generic

text: soil metagenome

text: The high-throughput sequencing of 16S rRNA genes at the whole community level provides an almost unbiased profiling strategy for measuring characteristic changes in relative proportions of the microorganisms involved in certain functional processes, such as nitrification, in a complex system. There are 84 samples in the study.Two kinds of soil are involved in the study including forest soil(FS) and tea orchard soil(TS).The sample reflect the 16s rRNA gene diversity of forest soil and tea orchard soil in Zhejiang province of China.The soil samples were incubated in in soil microcosms for 8 weeks. Microcosm incubation was performed by adding 100.0 μg of urea-N g-1 d.w.s or sterilized water every week.By combining DNA-based stable isotope probing (SIP) and high-throughput pyrosequencing,The pyrosequencing results of fraction 4-9 were showed in the paper.

text: Urease gene-containing Archaea dominate autotrophic ammonia oxidation in two acid soils


characteristic: External Id

text: Genetic Strain Stock Center, Plant Genetics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Oryza longistaminata

characteristic: organism

text: O.longistaminata W1413

characteristic: sample comment

characteristic: sample name

characteristic: strain

characteristic: title


text: live

text: Generic

text: Oryza longistaminata

text: O.longistaminata W1508


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: source: MCF7; description: chip_seq library.


text: Kumazawa LDepartment of Information and Basic Science, Graduate School of Natural Sciences, Nagoya City Universityaboratory, Department of Information and Biological Sciences, Graduate School of Natural Sciences, Nagoya City University

text: live

text: Generic

text: Anolis carolinensis

text: An individual of the green anole lizard (Anolis carolinensis) was caught in the wild. RNA was extracted from nose and cDNA was prepared with randam hexamers as primers.

text: Anolis carolinensis nose cDNA


text: live

text: Generic

text: Homo sapiens

text: source: lung epithelial cells transfected control siRNA and stimulated with IL-4; description: Oligo capped transcriptional start site library.


text: live

text: Generic

text: Homo sapiens


text: Div. Epigenetics, Faculty of Medicine, Kyushu University

text: live

text: Generic

text: Mus musculus

text: source:C2C12 cells

text: C2C12 cells


text: live

text: Generic

text: Mus musculus

text: source: B22 cells were generated previously described in de la Serna et al. (2000) Mol. Cell. Biol. 20, 2839-2851

text: B22 cells


text: live

text: Generic

text: Homo sapiens

text: source: DLD-1; description: chip_seq library.


text: live

text: Generic

text: Homo sapiens

text: source: lung epithelial cells transfected siRNA against STAT6 and non-stimulated with IL-4; description: Oligo capped transcriptional start site library.


text: live

text: Generic

text: Ramos

text: Homo sapiens

text: non-immunoprecipitated sample. ChIP_seq library. Human Ramos cell line.


text: Wenzhou Medical College

text: live

text: Generic

text: Klebsiella pneumoniae

text: A total of 206 clinical strains of K. pneumoniae isolated from the sputum or stool samples of patients were collected in the First Affiliated Hospital of Wenzhou Medical College, China over the years 2002-2008.


text: live

text: Generic

text: Mus musculus


text: live

text: Generic

text: Mus musculus


text: live

text: Generic

text: Homo sapiens

text: Totaral RNA isolated from HeLa TO ARE cells labeled with BromoUridine was processed to immunoprecipitation by using anti-BrU antibody.


text: live

text: Generic

text: Homo sapiens

text: none provided


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

text: live

text: Generic

text: Bacillus anthracis

text: BA104 isolated from swine in Japan in 1982


text: Genome Resource and Analysis Unit, Genomics Laboratory, Center for Developmental Biology, Kobe Institute, RIKEN

text: live

text: Generic

text: Scyliorhinus torazame

text: Torazame EST

text: Torazame EST


text: live

text: Generic

text: Eptatretus burgeri

text: Hagfish EST

text: Hagfish EST


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

text: Mus musculus

text: Total RNA extracted from the olfactory epithelium of three C57BL/6J mice at stage P21 (2 males, one female).


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

characteristic: note

text: Homo sapiens

text: source: Fetal Kidney; description: Oligo capped transcriptional start site library.


text: Ecological genomics lab, Department of Forest Genetics, Forestry and Forest Products Research Institute

text: live

text: Generic

text: Schima mertensiana

text: RNA was extracted from inner bark and current year twigs of several year old seedling of Schima mertensiana, naturally grown in Bonin Island, and cDNA library construction and next generation sequencing by Roche 454 GS FLX sequencer with titanium chemistry were carried out.

text: Schima mertensiana


text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells were incubated for 12 hours in the absence of anctinomycinD, followed by isolation of tatal RNA. BrU-containg RNAs were immunopurified by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: IP A- 12h


text: live

text: Generic

text: Homo sapiens

text: source: MCF7; description: chip_seq library.


text: Central Research Laboratory, Shiga University of Medical Science

text: live

text: Generic

text: Homo sapiens

text: The total RNA were prepared from T24 bladder carcinoma cell line, cultured for 24 h under DMEM without glucose (0 mM).


text: live

text: Generic

text: Homo sapiens

text: The total RNA were prepared from 24 bladder carcinoma cell line, cultured under DMEM containing 25 mM glucose.


text: live

text: Generic

text: Homo sapiens

text: The total RNA were prepared from T24 bladder carcinoma cell line, cultured under DMEM containing 25 mM glucose.


text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Latimeria chalumnae

text: RNA from pharynx of Tanzanian coelacanth Latimeria chalumnae.


text: live

text: Generic

text: Latimeria chalumnae

text: RNA from pectoral fin of Tanzanian coelacanth Latimeria chalumnae.


text: live

text: Generic

text: Latimeria chalumnae

text: RNA from kidney of Tanzanian coelacanth Latimeria chalumnae.


text: live

text: Generic

text: Latimeria chalumnae

text: RNA from tail muscle of Tanzanian coelacanth Latimeria chalumnae.


text: live

text: Generic

text: Latimeria chalumnae

text: RNA from pelvic fin of Tanzanian coelacanth Latimeria chalumnae.


text: live

text: Generic

text: Latimeria chalumnae

text: RNA from gill of Tanzanian coelacanth Latimeria chalumnae.


text: Insect Genome Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences

text: live

text: Generic

text: Plutella xylostella

text: Plutella xylostella, PXS (Bt toxin susceptible) strain

text: Whole genome shotgun sequences of of Bt toxin susceptible (PXS) Plutella xylostella strain


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: Mus musculus


text: live

text: Generic

text: Plutella xylostella

text: Total RNA was extracted from PXS (Bt toxin susceptible) strain, 4th instar larvae, whole body.

text: RNA sequencing of Bt toxin susceptible (PXS) Plutella xylostella strain


text: Kazusa DNA Research Institute

text: live

text: Generic

text: Jatropha curcas

text: Palawan

text: Genome sequencing of Jatropha curcas


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

text: Generic

text: Homo sapiens

text: Hela cells which were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% fetal bovine serum under a humidified atmosphere with 5% CO2 at 37ÃÂ°C.


text: live

text: Generic

text: Homo sapiens

text: Hela cells which were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% fetal bovine serum under a humidified atmosphere with 5% CO2 at 37Â°C.


text: Cancer Genomics Project, Faculty of Medicine University Hospital, The University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: Flag-tagged cDNAs of the wild-type and mutant U2AF35 were generated by in vitro mutagenesis, constructed into a tetracycline-inducible lentivirus-based expression vector, and used for gene transfer to cultured cell lines, with EGFP marking.

text: S34F mutant U2AF35 transduced HeLa cells


text: live

text: Generic

text: Homo sapiens

text: Hela cells (without wild-type U2AF35 induction by doxycycline)


text: live

text: Generic

text: Homo sapiens

text: Wild-type U2AF35 transduced HeLa cells


text: live

text: Generic

text: Homo sapiens

text: Hela cells (without S34F mutant U2AF35 induction by doxycycline)


text: Marine Genomics Unit, Okinawa Institute of Science and Technology

text: live

text: Generic

text: Staghorn coral

characteristic: common name

text: Acropora digitifera

text: An Acropora digitifera colony isolated from Oku, Kunigami, Okinawa, Japan, 2008 (permission number of the Aquaculture Agency of Okinawa Prefecture: 20-27). Sperm from a single colony served as the DNA source of the genome sequence.

text: Acropora digitifera genome sequencing


characteristic: External Id

text: Laboratory of Insect Genetics and Biosciences, Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, University of Tokyo

text: live

text: Generic

text: ovary

characteristic: cell type

text: 4 day old

characteristic: dev stage

text: Bombyx mori

text: piRNA library was constructed from day 4 pupal ovaries of WT female.

text: female

characteristic: sex

text: WT ovarian piRNA library


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: ovary

text: 4 day old

text: Bombyx mandarina

text: Bombyx mori strain Mandarina W (MW) contains W chromsome of Bombyx mandarina. piRNA library was constructed from day 4 pupal ovaries of MW female.

text: female

text: MW ovarian piRNA library


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: testis

text: 4 day old

text: Bombyx mori

text: piRNA library was constructed from day 4 pupal testes of WT male.

text: male

text: WT testis-derived piRNA library


text: live

text: Generic

text: testis

text: 4 day old

text: Bombyx mori

characteristic: organism

text: Bombyx mori strain without Fem (also called DfZ-DfW) contains W chromosome-fragment attached Z chromosome. piRNA library was constructed from day 4 pupal testes of WF males.

characteristic: sample comment

characteristic: sample name

text: male

characteristic: strain

text: WF testis-derived piRNA library


text: live

text: Generic

text: ovary

text: 4 day old

text: Bombyx mori

text: Bombyx mori strain Limitted Yellow (LY) contains a truncated W chromosome. piRNA library was constructed from day 4 pupal ovaries of LY female.

text: female

text: Limitted Yellow (LY) containsa truncated W chromosome

text: LY ovarian piRNA library

characteristic: title


characteristic: External Id

text: Microbial Gene Research and Resources Facility, Biomolecular and Physical Sciences, Griffth University

text: live

text: Generic

text: Caloramator australicus RC3

text: Genome sequence of Caloramator australicus RC3


text: Laboratory of Food Microbiology, Department of Food Science, Faculty of Bioresources and Environmental Science, Ishikawa Prefectural University

text: live

text: Generic

text: food metagenome

text: The 16S ribosomal DNA V1-V2 regions were amplified from Japanese fermented food narezushi, and the fragments were analyzed by pyrosequencing.

text: Pyrosequencing study of 16S ribosomal DNA isolated from fermented food narezushi


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens


text: Symbiotic Network Design Laboratory, Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University

text: live

text: Generic

text: MDS42 is a multiple deletion Escherichia coli strain produced by Scarab Genomics

characteristic: substrain

text: Escherichia coli str. K-12 substr. MDS42, complete genome


text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: source: DLD-1; description: chip_seq library.


text: live

text: Generic

text: Homo sapiens

text: source: MCF7; description: chip_seq library.


text: Akashi Laboratory, Department of Population Genetics, Division of Evolutionary Genetics, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: cynomolgus macaque

characteristic: common name

text: Macaca fascicularis

text: Whole blood cells for genomic DNA were obtained from a 25-year-old male cynomolgus macaque (Malaysian), housed at the Tsukuba Primate Research Center (TPRC), National Institute of Biomedical Innovation (NIBIO), Tsukuba, Ibaraki, Japan, in accordance with guideline of the TPRC, NIBIO, Tsukuba, Ibaraki, Japan. The sampled macaque is a F1 progenitor of unrelated wild individuals captured around the south of Kuala Lumpur.

text: Malayasian cynomolgus macaque male, genomic DNA


text: National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology

characteristic: INSDC center name

text: live

text: Generic

text: Macaca fascicularis

text: 16 tissues (Cecum, Cerebellum, Heart, Kidney, Liver, Lung, Ovary, Pancreas, Prostate, Salivary gland, Skeletal muscle, Small intestine,Spleen, Stomach, Testis and Cerebrum ) of Chinese-origin Macaca fascicularis were sequenced.

text: Crab-eating monkey


characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens


characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: source: TIG3; description: chip_seq library.


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

characteristic: INSDC secondary accession

text: live

text: Generic

text: human metagenome

text: human abscess sample of unknown etiology

text: Iwaki-08 abscess sample


text: Cellular Molecular Biology, Translational Medicine, Graduate School of Medicine, Chiba University

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: MLL-AF9 induced AML Ezh2 wild type (input)

text: chiba iwama TP3 3 input


text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells transfected with siControl (control siRNA) were used to isolate BrU-labeled total RNA. BrU-containg RNAs were immunopurified by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: Sicontrol 0h


text: Bioinformatics Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences

text: live

text: Generic

characteristic: NCBI submission package

characteristic: accession

text: Oryza rufipogon

text: Seeds of O. rufipogon W0106 were treated at 45 C for 10 days for breaking dormancy. Then the seeds were dehulled and steriled with a fungicidal reagents. Young seedlings were then grown for a week on a moist filter paper in petri dishes in a growth incubator (partial shade). Total plants were flash-frozen in liquid nitrogen and stored at -80 C until they were used. Total RNAs were prepared from the whole plants with RNeasy Plant Mini Kit (Qiagen, Valencia, CA USA).

text: Whole plant body of Oryza rufipogon W0106


text: Iwate Biotechnology Research Center

text: live

text: Generic

characteristic: SRA accession

text: rice

text: Hitomebore

characteristic: cultivar

text: Oryza sativa Japonica Group

characteristic: organism

text: fresh leaves from aseptically germinated plants

text: Hit5500-sd, a mutant of Oryza sativa cv. Hitomebore


text: Iwate Biotechnology Research Center

text: live

text: Generic

text: rice

text: Hitomebore

text: Oryza sativa Japonica Group

characteristic: sample comment

characteristic: sample name

text: Hit5243-sm, a mutant of Oryza sativa cv. Hitomebore


characteristic: External Id

text: Iwate Biotechnology Research Center

text: live

text: Generic

text: rice

text: Hitomebore

text: Oryza sativa Japonica Group

text: Hit1917-pl1, a mutant of Oryza sativa cv. Hitomebore

characteristic: title


text: Iwate Biotechnology Research Center

text: live

text: Generic

text: rice

text: Hitomebore

text: Oryza sativa Japonica Group

text: Hit1917-sd, a mutant of Oryza sativa cv. Hitomebore


text: Iwate Biotechnology Research Center

text: live

text: Generic

text: rice

text: Hitomebore

text: Oryza sativa Japonica Group

text: Hit0746-sd, a mutant of Oryza sativa cv. Hitomebore


text: Iwate Biotechnology Research Center

text: live

text: Generic

text: rice

text: Hitomebore

text: Oryza sativa Japonica Group

text: Hit0813-pl2, a mutant of Oryza sativa cv. Hitomebore


text: Iwate Biotechnology Research Center

text: live

text: Generic

text: rice

text: Hitomebore

text: Oryza sativa Japonica Group

text: Hit5814-sd, a mutant of Oryza sativa cv. Hitomebore


text: Kitajima Laboratory, Department of Applied Biology, Graduate School of Science and Technology, Kyoto Institute of Technology

text: live

text: Generic

text: mulberry

text: Minamisakari

text: Morus alba

text: mRNA-seq of laticifers of petiole of mulberry. GS-FLX titanium


text: live

text: Generic

text: mulberry

text: Minamisakari

text: Morus alba

text: mRNA-seq of laticifers of trunk of mulberry. GS-FLX titanium


text: Laboratory of Insect Genetics and Biosciences, Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, University of Tokyo

text: live

text: Generic

text: embryo

characteristic: cell type

text: 24 hours after fertilization

characteristic: dev stage

text: Bombyx mori

text: piRNA library was constructed from 24 post hours fertilization embryos. piRNAs, ranging from 23-30 nucleotides, were easily gel-purified as piRNAs could be visualized simply by SYBRGold staining.

text: piRNAs from 24 hours after fertilization


characteristic: INSDC center name

text: live

text: Generic

text: embryo

text: 40 hours after fertilization

text: Bombyx mori

text: piRNAs from 40 hours after fertilization


characteristic: INSDC first public

text: live

text: Generic

text: embryo

text: 0-1 hours after fertilization

text: Bombyx mori

text: piRNA library was constructed from 0-1 post hours fertilization embryos. piRNAs, ranging from 23-30 nucleotides, were easily gel-purified as piRNAs could be visualized simply by SYBRGold staining.

text: piRNAs from 0-1 hours post fertilization embryos before zygotic genome activation


characteristic: INSDC last update

text: live

text: Generic

text: embryo

text: 12 hours post fertilization

text: Bombyx mori

text: piRNA library was constructed from 12 post hours fertilization embryos. piRNAs, ranging from 23-30 nucleotides, were easily gel-purified as piRNAs could be visualized simply by SYBRGold staining.

text: piRNAs from 12 hours post fertilization


characteristic: INSDC secondary accession

text: live

text: Generic

text: embryo

text: 6 hours after fertilization

text: Bombyx mori

text: piRNA library was constructed from 6 post hours fertilization embryos. piRNAs, ranging from 23-30 nucleotides, were easily gel-purified as piRNAs could be visualized simply by SYBRGold staining.

text: piRNAs from 6 hours post fertilization


text: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture

text: live

characteristic: INSDC status

text: Generic

text: Saccharomyces cerevisiae

text: S. cerevisiae BY2961 EMS-mutagenized strains


text: live

text: Generic

characteristic: NCBI submission model

text: Saccharomyces cerevisiae

text: S. cerevisiae BY2961 Mutator strains


text: live

text: Generic

characteristic: NCBI submission package

text: Saccharomyces cerevisiae

text: S. cerevisiae BY2961 parental strain


text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Wild Caught

characteristic: description

text: juvenile

text: Tanzania

characteristic: geo loc name

characteristic: isolate

text: Latimeria chalumnae

text: gill

characteristic: tissue type

text: Genome from gill of Tanzanian coelacanth Latimeria chalumnae


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

characteristic: organism

text: source:C2C12 cells

characteristic: sample comment


characteristic: External Id

text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: source: DLD-1; description: chip_seq library.

characteristic: sample name

characteristic: title


text: Hajime Hirase Research Unit, Brain Science Institute, RIKEN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Long Evans

characteristic: common name

text: Rattus norvegicus

text: Sample 1 Right CA3 S100202 No. 1-26; No. 301-310

text: Sample 1 Right CA3


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Long Evans

text: Rattus norvegicus

text: Sample 3 Left CA3 S100205 No. 311-344

text: Sample 3 Left CA3


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Long Evans

text: Rattus norvegicus

text: Sample 2 Left CA3 S100203 No. 27-30, No. 101-122, No. 201-211, No. 216-223, No. 231-242

text: Sample 2 Left CA3


text: live

text: Generic

text: Long Evans

text: Rattus norvegicus

text: Sample 3 Right CA3 S100206 No. 311-344

text: Sample 3 Right CA3


text: live

text: Generic

text: Long Evans

text: Rattus norvegicus

text: Sample 1 Left CA3 S100201 No. 1-26; No. 301-310

text: Sample 1 Left CA3


text: live

text: Generic

text: Long Evans

text: Rattus norvegicus

text: Sample 2 Right CA3 S100204 No. 27-30, No. 101-122, No. 201-211, No. 216-223, No. 231-242

text: Sample 2 Right CA3


text: live

text: Generic

text: Homo sapiens


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

text: live

text: Generic

text: Salmonella enterica subsp. enterica serovar Infantis

text: hydrogen sulfide-producing

text: Infantis

characteristic: serovar

text: enterica

characteristic: sub species

text: Salmonella enterica serovar Infantis GSI-1


text: live

text: Generic

characteristic: SRA accession

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: non-hydrogen sulfide-producing

text: Typhimurium

text: enterica

text: Salmonella enterica serovar Typhimurium GST-204


text: live

text: Generic

characteristic: organism

text: non-hydrogen sulfide-producing

text: Typhimurium

text: enterica

text: Salmonella enterica serovar Typhimurium GST-108


text: live

text: Generic

text: non-hydrogen sulfide-producing

characteristic: sample comment

text: Typhimurium

text: enterica

text: Salmonella enterica serovar Typhimurium GST-106


characteristic: External Id

text: live

text: Generic

text: hydrogen sulfide-producing

text: Typhimurium

text: enterica

text: Salmonella enterica serovar Typhimurium GST-92


text: live

text: Generic

text: non-hydrogen sulfide-producing

text: Infantis

text: enterica

text: Salmonella enterica serovar Infantis GSI-9


text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells transfected with RRP46-1 siRNA were incubated for 4 hours in the absence of BrU (chasing), followed by isolation of BrU-RNA by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: Rrp 4h


text: live

text: Generic

text: Paralichthys olivaceus

characteristic: host

text: food-poisoning fillet

characteristic: isolation source

text: food metagenome

text: food-poisoning sample of Paralichthys olivaceus


text: live

text: Generic

text: Paralichthys olivaceus

text: fillet

text: food metagenome

text: control sample of Paralichthys olivaceus.

characteristic: sample name

text: Paralichthys olivaceus control

characteristic: title


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells transfected with siControl (control siRNA) were incubated for 8 hours in the absence of BrU (chasing), followed by isolation of BrU-RNA by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: Sicontrol 8h


text: Bioinformatics Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences

characteristic: INSDC last update

text: live

text: Generic

text: Oryza sativa Japonica Group

text: Total mRNAs from callus, leaf, panicle before flowering, panicle after flowering, root, seed, and shoot of rice (Oryza sativa ssp. Japonica cv. Nipponbare)


text: Horticultural sciences, Graduate school of bioagricultural sciences, Nagoya university

characteristic: INSDC secondary accession

text: live

text: Generic

text: Pyrus communis

text: Flower receptacle was isolated by laser microdissection from flower bud of 'La France'

text: Flower receptacle of 'La France' on 1 week before full bloom


text: live

characteristic: INSDC status

text: Generic

text: Pyrus communis

text: Flower receptacle was isolated by laser microdissection from flower bud of large fruit mutant of 'La France'

text: Flower receptacle of large fruit mutant of 'La France' on 1 week before full bloom


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

text: live

text: Generic

characteristic: NCBI submission model

text: Bacillus anthracis

text: Mutant selected with ciprofloxacin from BA104

characteristic: strain


text: Laboratory of Biomolecular Science, Faculty of Pharmaceutical Sciences, Hokkaido University

text: live

text: Generic

characteristic: NCBI submission package

text: SH-SY5Y cells

characteristic: cell type

text: Homo sapiens

text: Source of DNA used for sequencing was ChIP samples from SH-SY5Y cells using anti-DJ-1 antibody.

text: SH-SY5Y ChIP


text: Laboratory of Molecular Genetics for Reproduction, National Institute for Basic Biology

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: Mus musculus small RNA, WT

text: Mus musculus small RNA, WT


text: live

text: Generic

text: Mus musculus

characteristic: organism

text: Mus musculus small RNA, EG

text: Mus musculus small RNA, EG


text: live

text: Generic

characteristic: cell line

text: Homo sapiens

characteristic: sample comment


characteristic: External Id

text: live

text: Generic

text: Mus musculus


text: Center for Genetic Resource Information, Comparative Genomics Laboratory, National Institute of Genetics, Research Organization of Information and Systems

text: live

text: Generic

text: Rattus norvegicus

text: Genome of Rattus norvegicus F344/Stm.

text: Genome of Rattus norvegicus F344/Stm.


text: live

text: Generic

text: Homo sapiens

text: source: TIG-3; description: chip_seq library.


text: Yoshizaki Lab., Marine Biosciences, Tokyo University of Marine Science and Technology

text: live

text: Generic

text: Oncorhynchus mykiss

text: Testes were collected from 5- and 12-month-old rainbow trout. Ovary and genital ridges were collected from 5-month-old rainbow trout and 40-day-old larvaes.

text: Rainbow trout (Oncorhynchus mykiss) gonad


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells were incubated for 6 hours in the absence of anctinomycinD, followed by isolation of tatal RNA. BrU-containg RNAs were immunopurified by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: IP A-6h


text: SSP Stem Cell Unit., School of Medicine, Kyushu University

text: live

text: Generic

text: myoblast cells

text: Mus musculus

text: source: C2C12 cells


text: Ito Laboratory, Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo

text: live

text: Generic

text: Mus musculus

text: Astrocyte were obtained from postnatal day 3 (P3) mouse brains (C57BL/6NCr). Cells were cultured for 10 days and shaken for 1 day to remove another types of cells. Genomic DNA was extracted from lysed astrocyte with protease k treatment followed by phenol-, phenol/chloroform extraction and ethanol precipitation.

text: mouse astrocyte


text: live

text: Generic

text: Homo sapiens

text: BromoUridine-labeled HeLa TO ARE cells transfected with RRP46-1 siRNA were used to isolate BrU-labeled total RNA. BrU-containg RNAs were immunopurified by anti-BrU antibody. Purified BrU-RNAs were analyzed.

text: Rrp 0h


text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: Homo sapiens

text: source: DLD-1; description: chip_seq library.


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

text: live

text: Generic

text: Francisella tularensis subsp. tularensis

text: SCHU variant passaged in mice on day 9.

text: tularensis

characteristic: sub species

text: Francisella tularensis subspecies tularensis SCHU variant P9.


text: live

text: Generic

text: SCHU variant passaged in mice on day 5.

characteristic: sample name

text: tularensis

text: Francisella tularensis subspecies tularensis SCHU variant P5.


text: live

text: Generic

text: SCHU variant passaged in mice on day 0.

text: tularensis

text: Francisella tularensis subspecies tularensis SCHU variant P0.

characteristic: title


text: Research Institute for Frontier Medicine, Department of Medical Genome Sciences, Sapporo Medical University

characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: Human lung cancer cell lines.

text: H1299 cells


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: human acute monocytic leukemia cell line


characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: Isolation of RNA following immunoprecipitation by anti-AGO1 antibody from THP-1 cells

characteristic: sample treatment

text: O96_anti-AGO1 immunoprecipitation


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: THP-1 whole cell RNA, no treatment

text: untreated


text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: Isolation of RNA following immunoprecipitation by anti-AGO2 antibody from THP-1 cells


text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: Isolation of RNA following immunoprecipitation by anti-AGO3 antibody from THP-1 cells


text: live

text: Generic

text: Homo sapiens

text: THP-1 whole cell RNA, after 3 day treatment with PAPD5 siRNA transfection

text: after 3 day treatment with GLD-2 siRNA transfection


text: live

text: Generic

text: Homo sapiens

text: THP-1 whole cell RNA, after 3 day treatment with PAPD7 siRNA transfection


text: live

text: Generic

text: Homo sapiens

text: THP-1 whole cell RNA, after 3 day treatment with PAPD4 (GLD-2) siRNA transfection


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens


text: Center of Molecular Biosciences, Tropical Biosphere Research Center, University of the Ryukyus

text: live

text: Generic

text: Nasutitermes takasagoensis

text: Nasutitermes takasagoensis collected from Ishigaki Island were used. For construction of a primary cDNA library, the frontal glands were dissected from the heads of soldiers. The RNA may have been from frontal gland cells and around tissues such as muscle and fat bodies. First strand cDNA was synthesized using an oligo(dT)18 anchor primer that included an XhoI restriction site and an adaptor sequence with an EcoRI restriction site according to the Gubler-Hoffman method. The cDNA was ligated into a pBluescript II SK(+) vector digested with EcoRI and XhoI restriction enzymes. The vector was transfected into E. coli DH10B competent cells. The plasmid was purified by phenol-chloroform extraction and ethanol precipitation and then diluted in TE buffer. The primary cDNA library was amplified because the quantity was insufficient for cDNA library preparation for GS Junior sequencing. The primary cDNA library was transformed into E. coli HST08 Premium Competent Cells. The amplified plasmid was used as a sample DNA to prepare a shotgun library for GS Junior Titanium Series.

text: cDNA library sequencing in the frontal gland of soldiers in Nasutitermes takasagoensis by 454 GS Junior pyrosequencing


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

text: live

text: Generic

text: human metagenome

text: P1 serum specimens from the 4th acute phase


text: live

text: Generic

text: human metagenome

text: P1 serum specimens from the 1st acute attack


text: live

text: Generic

text: human metagenome

text: P1 serum specimens from the 1st convalescent phase


text: live

text: Generic

text: human metagenome

text: DNA extracted from a formalin-fixed paraffin-embedded sample of the lymph node biopsy from P2 patient

text: P2 lymph node DNA


text: live

text: Generic

text: human metagenome

text: P1 pharyngeal swab sample from 4th acute phase


text: live

text: Generic

text: human metagenome

text: RNA extracted from a formalin-fixed paraffin-embedded sample of the lymph node biopsy from P2 patient. Total RNA was used for the double-stranded cDNA synthesis.

text: P2 lymph node RNA


text: RIKEN Omics Science Center, Yokohama Institute, RIKEN

text: live

text: Generic

text: Homo sapiens

text: Hela long nuclear cell fraction, control


text: live

text: Generic

text: Homo sapiens

text: Hela short nuclear cell fraction, LNA(+)


text: live

text: Generic

text: Homo sapiens

text: Hela long total cell fraction, control


text: live

text: Generic

text: Homo sapiens

text: Hela long cytoplasmic cell fraction, LNA(+)


text: live

text: Generic

text: Homo sapiens

text: Hela long cytoplasmic cell fraction, control


text: live

text: Generic

text: Homo sapiens

text: Hela short nuclear cell fraction, control


text: live

text: Generic

text: Homo sapiens

text: Hela long nuclear cell fraction, LNA(+)


text: live

text: Generic

text: Homo sapiens

text: Hela long total cell fraction, LNA(+)


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

characteristic: notes

text: Homo sapiens

text: source: Clonetech Brain; description: Oligo capped transcriptional start site library.


text: Department of Gastroenterology and Hepatology, Graduate School of Medicine, Kyoto University

text: live

text: Generic

characteristic: SRA accession

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from a Japanese antiviral therapy-naÃ¯ve patient with chronic hepatitis B

text: Hepatitis B virus genotype C DNA isolated from case17


text: live

text: Generic

text: Hepatitis B virus

characteristic: organism

text: Hepatitis B virus genotype C DNA isolated from a Japanese patient with fluminant hepatitis B

text: Hepatitis B virus genotype C DNA isolated from case03


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case10


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case09


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case12


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case13


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case04


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from a Japanese patient receiving nucleotide analogue therapy with chronic hepatitis B

text: Hepatitis B virus genotype C DNA isolated from case22


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case18


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case16


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case08


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case07


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case02


text: Department of Gastroenterology and Hepatology, Graduate School of Medicine, Kyoto University

text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case20


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case19


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from a Japanese patient with fluminant hepatitis B

text: Hepatitis B virus genotype C DNA isolated from case01


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case21


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype B DNA isolated from a Japanese antiviral therapy-naÃ¯ve patient with chronic hepatitis B

text: Hepatitis B virus genotype B DNA isolated from case14


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case23


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from a Japanese antiviral therapy-naÃ¯ve patient with chronic hepatitis B

text: Hepatitis B virus genotype C DNA isolated from case15


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case11


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case05


text: live

text: Generic

text: Hepatitis B virus

text: Hepatitis B virus genotype C DNA isolated from case06


text: Arima lab., Department of Informative Genetics, Environment and Genome Research Center, Graduate School of Medicine, Tohoku University

text: live

text: Generic

text: Mus musculus

text: JF1 females were mated with B6 males to generate [JF1xB6]F1 mice. Total RNA was extracted using ISOGEN (Nippon gene, Tokyo, Japan) and further purified RNeasy mini Kit and RNase-free DNase (Qiagen, CA, USA) from four [JF1xB6]F1 placentas at E13.5, and pooled. Twelve micrograms of total RNA was used for rRNA depletion (RiboMinus Eukaryote kit for RNA-seq, Invitrogen, CA, USA) and RNA-seq library construction (SOLiD Whole Transcriptome Analysis Kit, Life technologies, CA, USA) according to the manufacturer’s protocol.


text: live

text: Generic

text: Mus musculus

text: B6 females were mated with JF1 males to generate [B6xJF1]F1 mice. Total RNA was extracted using ISOGEN (Nippon gene, Tokyo, Japan) and further purified RNeasy mini Kit and RNase-free DNase (Qiagen, CA, USA) from four [B6xJF1]F1 placentas at E13.5, and pooled. Twelve micrograms of total RNA was used for rRNA depletion (RiboMinus Eukaryote kit for RNA-seq, Invitrogen, CA, USA) and RNA-seq library construction (SOLiD Whole Transcriptome Analysis Kit, Life technologies, CA, USA) according to the manufacturer’s protocol.


text: Laboratory of Functional Genomics, Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: none provided


text: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

text: live

text: Generic

text: Bacillus anthracis

text: Mutant selected with ciprofloxacin from BA103

characteristic: strain


text: Fish diseases, State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences

text: live

text: Generic

text: fish metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample JYNa1 as a template; intestinal sample was collected from 1 fish

characteristic: sample comment

text: fish_related environments_microbiome: JYNa1


characteristic: External Id

text: live

text: Generic

text: fish metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample JYNa3 as a template; intestinal sample was collected from 1 fish

text: fish_related environments_microbiome: JYNa3


text: live

text: Generic

text: fish metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample JYNC as a template; intestinal sample was collected from 1 fish

text: fish_related environments_microbiome: JYNC


text: live

text: Generic

text: food metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample PHSL as a template; feed sample was collected from 3 locations and pooled together

text: fish_related environments_microbiome: PHSL


text: live

text: Generic

text: fish metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample FGCC2 as a template; intestinal sample was collected from 1 fish

text: fish_related environments_microbiome: FGCC2


text: live

text: Generic

text: fish metagenome

text: GS-FLX pyrosequencing of an amplicon pool of 16S rRNA gene fragments (~526 bp), spanning the V1 and V3 hypervariable regions, PCR amplified with barcoded primers using gDNA extracted from sample JYNb1 as a template; intestinal sample was collected from 1 fish

text: fish_related environments_microbiome: JYNb1