text: Emory

characteristic: INSDC first public

text: live

text: Generic

text: embryo 0-8h

text: ChIP

text: Drosophila simulans

text: embryo

text: BEAF ChIP in Drosophila simulans


status: PUBLIC

characteristic: External Id

text: Emory

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: embryo 0-8h

tag: attribute

characteristic: developmental stage

text: input

characteristic: fraction

text: Drosophila simulans

characteristic: organism

text: embryo

text: input in Drosophila simulans

characteristic: title


text: Emory

text: live

text: Generic

text: BEAF [Bushey AM, Ramos E, Corces VG. Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. Genes Dev 2009 Jun 1;23(11):1338-50. PMID: 19443682]

characteristic: custom antibody

text: embryo 0-10h

text: ChIP

text: Drosophila pseudoobscura

text: embryo

text: BEAF ChIP in Drosophila pseudoobscura


text: Emory

text: live

text: Generic

text: embryo 0-10h

text: input

text: Drosophila pseudoobscura

text: embryo

text: input in Drosophila pseudoobscura


text: Emory

text: live

text: Generic

text: embryo 0-12h

text: ChIP

text: Drosophila virilis

text: embryo

text: BEAF ChIP in Drosophila virilis


text: Emory

text: live

text: Generic

text: embryo 0-12h

text: input

text: Drosophila virilis

text: embryo

text: input in Drosophila virilis


Cerebrum and testis of BALB/c mouse

text: Beijing Institute of Genomics Chinese Acad of Sci - Key Lab

text: live

text: Generic

text: Mus musculus

text: Testis of BALB/c mouse


N1 NF3

text: ETH Zurich

text: live

text: Generic

text: human gut metagenome

text: Human fecal sample


text: Georg-August University of Goettingen

text: live

text: Generic

text: environmental samples

text: soil from a mixed temperate broadleaf forest in Central Germany (51*04' N 10*30' E, about 350 m a.s.l) from a depth of 0 - 10 cm


N1 NF4

text: ETH Zurich

text: live

text: Generic

text: human gut metagenome

text: Human fecal sample


N1 NF5

text: ETH Zurich

text: live

text: Generic

text: human gut metagenome

text: Human fecal sample


text: Regev Lab, Broad Institute

text: live

text: Generic

text: zygote

text: Mus musculus

text: zygote No PB

characteristic: strain

text: zygote No PB BDF1-X1-4

text: polar body removed

characteristic: treatment


text: Regev Lab, Broad Institute

text: live

text: Generic

text: zygote

text: Mus musculus

text: zygote No PB

text: zygote NoPB2-BDF1-X1-4

text: polar body removed


text: Regev Lab, Broad Institute

text: live

text: Generic

text: zygote

text: Mus musculus

text: zygote No PB

text: zygote No PB BDF1-X1-5

text: polar body removed


text: Regev Lab, Broad Institute

text: live

text: Generic

text: zygote

text: Mus musculus

text: zygote No PB

text: zygote NoPB2-BDF1-X1-5

text: polar body removed


text: Regev Lab, Broad Institute

text: live

text: Generic

text: 2 cell

text: Mus musculus

text: 2 cell No PB

text: 2 cell No PB BDF1-X1-5

text: polar body removed


text: Regev Lab, Broad Institute

text: live

text: Generic

text: 4 cell

text: Mus musculus

text: 4 cell No PB

text: 4 cell No PB BDF1-X1-4

text: polar body removed


text: Regev Lab, Broad Institute

text: live

text: Generic

text: 4 cell

text: Mus musculus

text: 4 cell No PB

text: 4 cell No PB BDF1-X1-5

text: polar body removed


text: Regev Lab, Broad Institute

text: live

text: Generic

text: 8 cell

text: Mus musculus

text: 8 cell No PB

text: 8 cell No PB BDF1-X1-3

text: polar body removed


text: Regev Lab, Broad Institute

text: live

text: Generic

text: sperm

text: Mus musculus

text: sperm X1-3

text: sperm X1-3


text: Regev Lab, Broad Institute

text: live

text: Generic

text: sperm

text: Mus musculus

text: sperm2 X1-3

text: sperm2 X1-3


text: Regev Lab, Broad Institute

text: live

text: Generic

text: sperm

text: Mus musculus

text: sperm X1-4

text: sperm X1-4


Embryonic stem cell line of S129 mouse

text: live

text: Generic

text: Mus musculus

text: Embryonic stem cell line of S129 mouse


text: Crispino, Medicine, Northwestern University

text: live

text: Generic

text: HA-tag antibody (Santa Crruz Biotechnology, sc-7392)

characteristic: antibody

text: GATA1-deficient cell line with megakaryocyte and erythrocyte differentiation potential

characteristic: cell line

characteristic: cell type

text: ChIP

text: Mus musculus

text: Cells grown in TPO supernatant (10% v/v)

characteristic: protocol

characteristic: retrovirus

text: G1ME cells

text: GATA-1 ChIP-Seq


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: ChIP

text: Mus musculus

text: G1ME cells

text: V205G ChIP-Seq


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: input

text: Mus musculus

text: G1ME cells

text: Input DNA


text: Helmholtz-Centre Munich

text: live

text: Generic

text: CGAGAGATAC

characteristic: barcode

text: 6.9 m below ground

characteristic: depth

characteristic: file accn

text: sediment metagenome

characteristic: organism

text: b

characteristic: replicate

text: small RNA

characteristic: rna subtype

text: Environmental sample

characteristic: sample type

text: 23 February 2006

characteristic: sampling time

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.b

characteristic: title


characteristic: External Id

text: Helmholtz-Centre Munich

characteristic: INSDC center name

text: live

text: Generic

text: ATACGACGTA

text: 6.9 m below ground

text: sediment metagenome

text: c

text: small RNA

text: Environmental sample

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c


text: Helmholtz-Centre Munich

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: TCACGTACTA

text: 6.7 m below ground

text: sediment metagenome

text: b

text: small RNA

text: Environmental sample

text: 26 September 2008

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Sep. 08 6.7m rep.b


text: Helmholtz-Centre Munich

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: CGTCTAGTAC

text: 6.7 m below ground

text: sediment metagenome

text: c

text: small RNA

text: Environmental sample

text: 26 September 2008

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Sep. 08 6.7m rep.c


text: Helmholtz-Centre Munich

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: TCTACGTAGC

text: 6.9 m below ground

text: sediment metagenome

text: b

text: small RNA

text: Environmental sample

text: 05 June 2009

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Jun. 09 6.9m rep.b


text: Helmholtz-Centre Munich

text: live

text: Generic

characteristic: SRA accession

text: TGTACTACTC

characteristic: barcode

text: 6.9 m below ground

text: sediment metagenome

text: c

text: small RNA

text: Environmental sample

text: 05 June 2009

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Jun. 09 6.9m rep.c


text: Helmholtz-Centre Munich

text: live

text: Generic

text: ACGAGTGCGT

text: 6.9 m below ground

characteristic: depth

characteristic: file accn

text: Aliivibrio fischeri

text: small RNA

text: Environmental sample + pure culture (A. fisheri) DNA

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 20% qPCR quantified DNA from A. fisheri (rep. a)


text: Helmholtz-Centre Munich

text: live

text: Generic

text: ACGCTCGACA

text: 6.9 m below ground

text: Aliivibrio fischeri

characteristic: organism

characteristic: replicate

text: small RNA

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 2% qPCR quantified DNA from A. fisheri (rep. a)


text: Helmholtz-Centre Munich

text: live

text: Generic

text: AGACGCACTC

text: 6.9 m below ground

text: Aliivibrio fischeri

text: small RNA

characteristic: rna subtype

characteristic: sample type

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 0.2% qPCR quantified DNA from A. fisheri (rep. a)


text: Helmholtz-Centre Munich

text: live

text: Generic

text: AGCACTGTAG

text: 6.9 m below ground

text: Aliivibrio fischeri

text: small RNA

text: 23 February 2006

characteristic: sampling time

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 0% qPCR quantified DNA from A. fisheri (rep. a)

characteristic: title


characteristic: External Id

text: Helmholtz-Centre Munich

characteristic: INSDC center name

text: live

text: Generic

text: ATCAGACACG

text: 6.9 m below ground

text: Aliivibrio fischeri

text: small RNA

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 20% qPCR quantified DNA from A. fisheri (rep. b)


text: Helmholtz-Centre Munich

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATATCGCGAG

text: 6.9 m below ground

text: Aliivibrio fischeri

text: small RNA

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 2% qPCR quantified DNA from A. fisheri (rep. b)


text: Helmholtz-Centre Munich

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: CGTGTCTCTA

text: 6.9 m below ground

text: Aliivibrio fischeri

text: small RNA

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 0.2% qPCR quantified DNA from A. fisheri (rep. b)


text: Helmholtz-Centre Munich

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: CTCGCGTGTC

text: 6.9 m below ground

text: Aliivibrio fischeri

text: small RNA

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 0% qPCR quantified DNA from A. fisheri (rep. b)


text: Helmholtz-Centre Munich

text: live

text: Generic

characteristic: SRA accession

text: TCTACGTAGC

characteristic: barcode

text: 6.9 m below ground

text: Aliivibrio fischeri

text: small RNA

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 20% qPCR quantified DNA from A. fisheri (rep. c)


text: Helmholtz-Centre Munich

text: live

text: Generic

text: TGTACTACTC

text: 6.9 m below ground

characteristic: depth

characteristic: file accn

text: Aliivibrio fischeri

text: small RNA

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 2% qPCR quantified DNA from A. fisheri (rep. c)


text: Helmholtz-Centre Munich

text: live

text: Generic

text: ACGACTACAG

text: 6.9 m below ground

text: Aliivibrio fischeri

characteristic: organism

characteristic: replicate

text: small RNA

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 0.2% qPCR quantified DNA from A. fisheri (rep. c)


text: Helmholtz-Centre Munich

text: live

text: Generic

text: CGTAGACTAG

text: 6.9 m below ground

text: Aliivibrio fischeri

text: small RNA

characteristic: rna subtype

characteristic: sample type

text: 23 February 2006

text: Aquifer Sediment

text: Environmental DNA from contaminated aquifer Feb. 06 6.9m rep.c + 0% qPCR quantified DNA from A. fisheri (rep. c)


text: Diabetes, City of Hope

text: live

text: Generic

text: Rattus norvegicus

text: vascular smooth muscle cells, no Ang II stimulation

text: Sprague-Dawley

characteristic: strain

text: aorta

characteristic: tissue

text: rat vascular smooth muscle cells after 48h serum depletion

characteristic: title


characteristic: External Id

text: Diabetes, City of Hope

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rattus norvegicus

text: vascular smooth muscle cells, Ang II stimulation for 1h

text: Sprague-Dawley

text: aorta

text: rat vascular smooth muscle cells stimulated with Ang II for 1h


text: Diabetes, City of Hope

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Rattus norvegicus

text: vascular smooth muscle cells, Ang II stimulation for 3h

text: Sprague-Dawley

text: aorta

text: rat vascular smooth muscle cells stimulated with Ang II for 3h


text: Diabetes, City of Hope

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rattus norvegicus

text: vascular smooth muscle cells, Ang II stimulation for 24h

text: Sprague-Dawley

text: aorta

text: rat vascular smooth muscle cells stimulated with Ang II for 24h


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae GA56348

text: Streptococcus pneumoniae GA56348

type: AMR curated data - CABBAGE

value: chloramphenicol

value: susceptible

value: Streptococcus pneumoniae

value: telithromycin

value: trimethoprim-sulfamethoxazole

value: meropenem

value: vancomycin

value: cefotaxime

value: cefuroxime

value: linezolid

value: tetracycline

value: quinupristin-dalfopristin

value: ciprofloxacin

value: clindamycin

value: amoxicillin

value: erythromycin

value: resistant

value: levofloxacin

value: penicillin

value: ceftriaxone

value: rifampin


text: DOE Joint Genome Institute

text: live

text: Generic

text: Zea mays B73_NM_4

characteristic: description

text: Zea mays

characteristic: organism

characteristic: sample number

text: Generic sample from Zea mays


text: The Samuel Roberts Noble Foundation

text: live

text: Generic

text: Nicotiana benthamiana 20-day-old seedlings were subjected drought stress by withholding water. The water status was monitored gravimetrically until it reaches the prescribed level and leaf tissue was collected for total RNA isolation. First strand cDNA was used as template to amplify the partial fragments of genes.

text: 20-day-old seedlings

characteristic: dev-stage

characteristic: lab-host

text: Nicotiana benthamiana

text: leaf

characteristic: tissue-type

text: Nicotiana benthamiana drought stress induced genes

text: Plasmid

text: pDONR, Gateway

characteristic: vector


characteristic: External Id

text: Department of Animal and Plant Sciences, University of Sheffield

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: adult

text: Chorthippus parallelus parallelus

text: male

characteristic: sex

text: testis

text: Chorthippus parallelus parallelus testis tissue library

characteristic: title


text: University of Helsinki

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: cultivar

text: Specific primers were designed to amplify exon-exon junctions of R-like genes from potato cDNA.

text: Solanum tuberosum

text: leaf

text: Potato R-like genes, exon junction PCR products


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: GRU

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: male

text: Case-Control

characteristic: study design

characteristic: study name

text: No

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from Blood of a human male participant in the dbGaP study Genetics of Schizophrenia in an Ashkenazi Jewish Case-Control Cohort


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: DNA

text: Blood

text: GRU

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Case-Control

text: Genetics of Schizophrenia in an Ashkenazi Jewish Case-Control Cohort

text: No

characteristic: title


text: dbGaP

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

characteristic: analyte type

text: Blood

text: GRU

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Case-Control

text: No

text: DNA sample from Blood of a human female participant in the dbGaP study Genetics of Schizophrenia in an Ashkenazi Jewish Case-Control Cohort


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: GRU

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: male

text: Case-Control

characteristic: study design

text: Schizophrenia

characteristic: study disease

text: Yes


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: Blood

text: GRU

text: SNP Genotypes (Array)

text: Homo sapiens

text: female

text: Case-Control

text: Schizophrenia

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Svalbard Archipelago station 1 sample NOR 02_45m

characteristic: description

text: marine sediment metagenome

characteristic: organism

characteristic: sample number

text: Generic sample from marine sediment metagenome

characteristic: title


CMarA

text: University of Aveiro

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Berau

characteristic: area

text: Generic

characteristic: biosamplemodel

text: Indonesia

characteristic: country

text: 2008 September

characteristic: date

text: Marine lake

characteristic: environment

text: Sponge

characteristic: host

text: N 02 degrees 12' 31.2

characteristic: latitude

text: E 118 degrees 35' 46.7

characteristic: longitude

text: marine metagenome

text: Cinachyrella australiensis

characteristic: species

text: marine metagenome

characteristic: transect


CMarB

characteristic: External Id

text: University of Aveiro

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Berau

text: Generic

text: Indonesia

text: 2008 September

text: Marine lake

text: Sponge

text: N 02 degrees 12' 31.2

text: E 118 degrees 35' 46.7

text: marine metagenome

text: Cinachyrella australiensis

text: marine metagenome


CMarC

text: University of Aveiro

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Berau

text: Generic

text: Indonesia

text: 2008 September

text: Marine lake

text: Sponge

text: N 02 degrees 12' 31.2

text: E 118 degrees 35' 46.7

text: marine metagenome

characteristic: organism

text: Cinachyrella australiensis

text: marine metagenome

characteristic: title


CMarD

text: University of Aveiro

text: live

text: Generic

text: Berau

characteristic: area

text: Generic

characteristic: biosamplemodel

text: Indonesia

characteristic: country

text: 2008 September

characteristic: date

text: Marine lake

characteristic: environment

text: Sponge

text: N 02 degrees 12' 15.8

text: E 118 degrees 35' 55.3

text: marine metagenome

text: Cinachyrella australiensis

text: marine metagenome


text: Sartor, Department of Computational Medicine and Bioinformatics, University of Michigan

text: live

text: Generic

text: anti-CHOP

characteristic: antibody

text: Mouse embryonic fibroblast

characteristic: cell type

text: 11.5-12.5 days

characteristic: developmental stage

text: WT

characteristic: genotype/variation

text: Mus musculus

text: Mouse embronic fibroblast

characteristic: strain

text: Chop+/+ Tm ChIP-seq

text: Tunicamycin

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: anti-CHOP

text: Mouse embryonic fibroblast

text: 11.5-12.5 days

text: Chop-/-

text: Mus musculus

text: Mouse embronic fibroblast

text: Chop -/- Tm ChIP-seq

text: Tunicamycin


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mouse embryonic fibroblast

text: 11.5-12.5 days

text: WT

text: Mus musculus

characteristic: organism

text: Mouse embronic fibroblast

text: Atf4+/+ Tm ChIP-seq

characteristic: title

text: Tunicamycin


text: live

text: Generic

characteristic: antibody

text: Mouse embryonic fibroblast

text: 11.5-12.5 days

text: Mus musculus

text: Mouse embronic fibroblast

text: Atf4-/ Tm ChIP-seq

text: Tunicamycin


text: live

text: Generic

text: Mouse embryonic fibroblast

characteristic: cell type

text: 11.5-12.5 days

text: WT

text: Mus musculus

text: Mouse embronic fibroblast

text: Wild-type mock-RNA-seq

text: mock


text: live

text: Generic

text: Mouse embryonic fibroblast

text: 11.5-12.5 days

characteristic: developmental stage

text: WT

text: Mus musculus

text: Mouse embronic fibroblast

text: Wild-type Tm-RNA-seq

text: Tunicamycin


text: live

text: Generic

text: Mouse embryonic fibroblast

text: 11.5-12.5 days

text: Chop-/-

characteristic: genotype/variation

text: Mus musculus

text: Mouse embronic fibroblast

text: Chop-/- Mock-RNA-seq

text: mock


text: live

text: Generic

text: Mouse embryonic fibroblast

text: 11.5-12.5 days

text: Chop-/-

text: Mus musculus

text: Mouse embronic fibroblast

characteristic: strain

text: Chop-/- Tm-RNA-seq

text: Tunicamycin


text: live

text: Generic

text: Mouse embryonic fibroblast

text: 11.5-12.5 days

text: Mus musculus

text: Mouse embronic fibroblast

text: Atf4-/- Mock-RNA-seq

text: mock

characteristic: treatment


characteristic: External Id

text: live

text: Generic

text: Mouse embryonic fibroblast

text: 11.5-12.5 days

text: Mus musculus

text: Mouse embronic fibroblast

text: Atf4-/- Tm-RNA-seq

text: Tunicamycin


text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Generic

text: Wetland Surface Sediment Feb2011 Site B2 Bulk

characteristic: description

text: soil metagenome

characteristic: sample number

text: Generic sample from soil metagenome


text: Beijing Institute of Biology Science

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: The mosquitoes were maintained at 26**C***1**C and a long-day photoperiod (14*h light/10*h darkness cycle)

text: Culex quinquefasciatus


PRJNA43541.P. falciparum 3D7

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: Netherlands

text: blood (red cells only)

characteristic: isolation source

text: Plasmodium falciparum 3D7

text: P. falciparum 3D7

characteristic: sample name

text: H.sapiens

characteristic: specific host

text: Generic sample from Plasmodium falciparum 3D7


PRJNA43541.Plasmodium falciparum 3D7

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: Plasmodium falciparum 3D7

characteristic: organism

text: Plasmodium falciparum 3D7

characteristic: title


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Plasmodium falciparum 3D7

characteristic: strain


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Thermotoga thermarum DSM 5069

characteristic: description

text: Pseudothermotoga thermarum DSM 5069

text: DSM 5069

text: Generic sample from Thermotoga thermarum DSM 5069


text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: Generic

text: Caldisphaera lagunensis DSM 15908

text: Caldisphaera lagunensis DSM 15908

characteristic: sample number

text: DSM 15908

text: Generic sample from Caldisphaera lagunensis DSM 15908


text: DOE Joint Genome Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Escherichia coli MG1655

text: Generic sample from Escherichia coli str. K-12 substr. MG1655


text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Spirochaeta smaragdinae DSM 11293

text: Sediminispirochaeta smaragdinae DSM 11293

text: DSM 11293

text: Generic sample from Spirochaeta smaragdinae DSM 11293


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: SRA accession

text: Baltic Sea site KBB sample SWE 18_20.5m

text: marine metagenome

text: Generic sample from marine metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Zea mays B73_NM_3

text: Zea mays

text: Generic sample from Zea mays


text: DOE Joint Genome Institute

text: live

text: Generic

text: Wetland Surface Sediment Feb2011 Site A2 Cattail

text: soil metagenome

text: Generic sample from soil metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Amorphotheca resinae ATCC 22711

text: Amorphotheca resinae ATCC 22711

text: ATCC 22711

text: Generic sample from Amorphotheca resinae ATCC 22711


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: culture-collection

text: Amorphotheca resinae ATCC 22711

text: Amorphotheca resinae ATCC 22711

text: ATCC 22711


text: Laboratory of Genome Integrity, National Cancer Institutes, National Institutes of Health

text: live

text: Generic

text: RPA

characteristic: antibody

text: Calbiochem

characteristic: antibody vendor

text: Ku70 knockout

characteristic: genotype

text: Mus musculus

text: Spleen


text: live

text: Generic

characteristic: NCBI submission package

text: RPA

text: Calbiochem

text: 53BP1 knockout

text: Mus musculus

characteristic: organism

text: Spleen


characteristic: External Id

text: live

text: Generic

text: RPA

text: Calbiochem

text: wild-type

text: Mus musculus

text: Spleen

characteristic: title


text: Leibniz Institute for Age Research - Fritz Lipmann Institute

characteristic: INSDC center name

text: live

text: Generic

text: 10 week

characteristic: age

text: Generic

characteristic: biosamplemodel

text: RNA was isolated from the whole body of a 10 week old Nothobranchius furzeri (strain GRZ). The RNeasy Midi kit (Qiagen) was used for extraction.

text: Nothobranchius furzeri

text: single individual

characteristic: sample composition

text: GRZ

characteristic: strain

text: whole body

characteristic: tissue

text: Nothobranchius furzeri GRZ, 10w, whole body, mRNA


text: McGill University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Genome sequencing of a diploid self compatible Aethionema Arabicum plant using paired end sequencing with a library insert size of ~280nt.

characteristic: description

text: Aethionema arabicum

text: Aethionema Arabicum Illumina Paired End Sequencing


text: Beijing institute of Genomics

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: HEMn

characteristic: cell line

text: human normal melanocyte

characteristic: cell type

text: Homo sapiens

text: skin

text: HEMn


characteristic: External Id

text: Beijing institute of Genomics

text: live

text: Generic

characteristic: NCBI submission package

text: human primary melanoma

text: Homo sapiens

characteristic: organism

text: skin


text: Beijing institute of Genomics

characteristic: INSDC center name

text: live

text: Generic

text: human metastatic melanoma

text: Homo sapiens

text: skin

characteristic: title


text: live

text: Generic

text: Trout Bog Practice 03JUN2009 epilimnion

text: freshwater metagenome

characteristic: sample number

text: Generic sample from freshwater metagenome


text: University of California, Davis - Comai Lab

text: live

text: Generic

text: Please refer to the following paper for the origin of this line: Federico Luis Iniguez-Luy, Lewis Lukens, Mark W. Farnham, Richard M. Amasino, Thomas C. Osborn. Development of public immortal mapping populations, molecular markers and linkage maps for rapid cycling Brassica rapa and B. oleracea. Theor Appl Genet (2009) 120:31-43

text: Brassica rapa


ALDOB Replicate 1 RNA

text: University of Washington Genome Sciences - Shendure Lab

text: live

text: Generic

text: Library of tagged ALDOB enhancer haplotypes was introduced into mouse liver via hydrodynamic tail vein injection. The mouse was euthanized after 24h and total RNA was extracted from the liver.

text: synthetic construct

text: ALDOB Replicate 1 RNA


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: culture-collection

text: Aspergillus aculeatus ATCC 16872

text: Aspergillus aculeatus ATCC 16872

text: ATCC 16872

characteristic: strain

text: Generic sample from Aspergillus aculeatus ATCC 16872


ALDOB Replicate 2 RNA

characteristic: INSDC first public

text: live

text: Generic

text: synthetic construct

text: ALDOB Replicate 2 RNA


ECR11 Replicate 1 RNA

characteristic: INSDC last update

text: live

text: Generic

text: Library of tagged ECR11 enhancer haplotypes was introduced into mouse liver via hydrodynamic tail vein injection. The mouse was euthanized after 24h and total RNA was extracted from the liver.

text: synthetic construct

text: ECR11 Replicate 1 RNA


ECR11 Replicate 2 RNA

characteristic: INSDC secondary accession

text: live

text: Generic

text: synthetic organisms

text: ECR11 Replicate 2 RNA


text: live

characteristic: INSDC status

text: Generic

text: Chlamydomonas reinhardtii

text: Chlamydomonas reinhardtii

text: Generic sample from Chlamydomonas reinhardtii


Switchgrass

text: Donald Danforth Plant Science Center

text: live

text: Generic

text: Panicum virgatum

text: Switchgrass


text: live

text: Generic

text: Pisolithus microcarpus 441

characteristic: description

text: Pisolithus microcarpus 441

text: Generic sample from Pisolithus microcarpus


text: Stazione Zoologica Anton Dohrn

text: live

text: Generic

characteristic: NCBI submission model

text: Shoots were collected by SCUBA diving in July 2007, after the stabilization of the summer thermocline, from a meadow located in Lacco Ameno, Ischia (Gulf of Naples). Sampling was performed at two different depths, -5m (shallow station) and -25m (deep station). PolyA+ mRNA was isolated from the total RNA using Dynabeads mRNA Purification kit (DYNAL BIOTECH) following the manufactures' instructions. The SSH experiment was carried out for two reciprocal FORWARD and REVERSE subtractions. Shallow library (FORWARD subtraction, S) was carried out with shallow growing plant mRNA as a tester pool and deep growing plant mRNA as a driver pool. At the same time, in the Deep library (REVERSE subtraction, D) deep mRNA was used as a tester pool and shallow mRNA as a driver pool. The construction of the forward and reverse SSH libraries was performed using the PCR-select cDNA subtraction kit (Clontech, Palo Alto, CA) and following the procedure suggested by the manufacturer. Two micrograms of polyA+ mRNA from each of the tester and driver populations were converted to double-stranded cDNA by reverse transcription followed by digestion with RsaI to produce shorter blunt ended fragments. The digested tester cDNA was subdivided into two populations, each of which was ligated with a different adaptor provided in the cDNA subtraction kit (Cat: No:637401). The two resulting subtractive libraries have been cloned separately in pCR2.1 TOPO (Invitrogen) prior to transferring into TOP10F' cells (Invitrogen). In order to generate ESTs from the constructed libraries, 1920 random clones, 960 from shallow and 960 from the deep library, were selected randomly and sequenced in double-pass, at MPI Molecular Genetics in Berlin (Germany).The bioinformatics analysis of EST data sequences was performed thanks to collaboration with the Westfalische Wilhelms University, Institute for Evolution and Biodiversity, Evolutionary Bioinformatics Group, (Muester, Germany).

text: adult

characteristic: dev-stage

text: Posidonia oceanica

text: leaf

characteristic: tissue-type

text: LIBEST_Pooc SSH

text: pCR 2.1-TOPO

characteristic: vector


characteristic: External Id

text: University of California at Berkeley

text: live

text: Generic

text: cDNAs prepared from shoots and roots of high boron treated Gypsophila arrostil

text: 21 day old

text: Gypsophila arrostii

text: shoots and roots

text: High boron treated Gypsophila arrostii shoots and roots cDNA library


text: Edith Heard, Mammalian developmental epigenetics, Institut Curie

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Primary mouse fibroblasts derived from E13.5 embryos

characteristic: cell type

text: Mus musculus

text: XX

characteristic: sex chromosome ploidy


characteristic: INSDC center name

text: live

text: Generic

text: mouse embryonic stem cells differentiated for two days with retinoic acid

text: Mus musculus

characteristic: organism

text: XX

characteristic: title


characteristic: INSDC first public

text: live

text: Generic

text: Undifferentiated mouse embryonic stem cells

text: Mus musculus

text: XX


characteristic: INSDC last update

text: live

text: Generic

text: Mus musculus

text: XY


characteristic: INSDC secondary accession

text: live

text: Generic

text: Mus musculus

text: XY


text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: XO


text: live

text: Generic

text: Mus musculus

text: XY


text: live

text: Generic

text: mES-derived neuronal progenitor cells

text: Mus musculus

text: XY

text: mES-derived neuronal progenitor cells


text: live

text: Generic

text: Clostridium thermocellum ATCC 27405

characteristic: description

text: Acetivibrio thermocellus ATCC 27405

characteristic: sample number

text: ATCC 27405

characteristic: strain

text: Generic sample from Clostridium thermocellum ATCC 27405

text: type strain of Clostridium thermocellum

characteristic: type material


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Deep oil plume Sample 16_below plume

text: marine metagenome

text: Generic sample from marine metagenome


characteristic: External Id

text: University of California, Riverside

text: live

text: Generic

text: Hordeum vulgare subsp. vulgare

text: Morex Barley BAC Pools Hv6


text: DOE Joint Genome Institute

text: live

text: Generic

characteristic: NCBI submission package

text: Clostridium sp. DL-VIII

text: Clostridium sp. DL-VIII

text: DL-VIII

text: Generic sample from Clostridium sp. DL-VIII


text: live

text: Generic

characteristic: SRA accession

text: Populus tremula x alba

text: Populus tremula x Populus alba

text: Generic sample from Populus tremula x Populus alba


text: live

text: Generic

text: Brachypodium distachyon Bd21-3

text: Brachypodium distachyon

text: Generic sample from Brachypodium distachyon


text: live

text: Generic

text: Cyclobacterium marinum DSM 745

text: Cyclobacterium marinum DSM 745

text: DSM 745

text: Generic sample from Cyclobacterium marinum DSM 745


text: DOE Joint Genome Institute

text: live

text: Generic

text: Zea mays spp mays Oh43

text: Zea mays subsp. mays

text: spp mays Oh43

text: Generic sample from Zea mays subsp. mays


B_ca_f transcriptome

text: Chinese Academy of Agricultural Science

text: live

text: Generic

text: Bemisia tabaci

text: Analysis of transcriptome dynamics in the B biotype Bemisia tabaci (the Middle East-Asia Minor 1) between the different host and sex strains


B_ca_m transcriptome

text: Chinese Academy of Agricultural Science

text: live

text: Generic

text: Bemisia tabaci


Beachmice

text: Harvard University

text: live

text: Generic

text: Pooled genomic DNA from 80 individuals

text: Peromyscus polionotus

text: Gulf coast P. polionotus


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Piromyces sp. E2

text: Piromyces sp. E2

text: Generic sample from Piromyces sp. E2


name: Transcriptome profiling of black pepper (Piper nigrum L.)

text: RGCB

text: live

text: Generic

text: Piper nigrum

text: De novo transcriptome assembly of black pepper (Piper nigrum L.)


Kerstin Dalman

text: SLU

text: live

text: Generic

text: Geographic origin: Wettingen, Z*rich, Switzerland Host: Pinus sp. Collected by O. Holdenrieder

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate 87087/8


Kerstin Dalman2

text: SLU

text: live

text: Generic

text: Geographic origin: Stolptsky, Belarus Host: Juniperus sp. Collector: K. Korhonen

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate 90231/2


Kerstin Dalman3

text: SLU

text: live

text: Generic

text: Geographic origin: Pistoia, Italy Host: Pinus nigra Collector: P. Capretti

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate 87068/6


Kerstin Dalman4

text: SLU

text: live

text: Generic

text: Geographic origin: Rams*sa, Sweden Host: Picea abies Collector: J. Stenlid

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate Rb_28-20


Kerstin Dalman5

text: SLU

text: live

text: Generic

text: Geographic origin: England, UK Host: Unknown Collector: J. Stenlid

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate W_15


Kerstin Dalman6

text: SLU

text: live

text: Generic

text: Geographic origin: Vedby, Sweden Host: Larix eurolepis Collector: J. Stenlid

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate V5:91_C4


Kerstin Dalman7

text: SLU

text: live

text: Generic

text: Geographic origin: Tartu, Estonia Host: Pinus sp. Collector: K. Korhonen

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate 91202/2


Kerstin Dalman8

text: SLU

text: live

text: Generic

text: Geographic origin: Bayern, Happerg, Germany Host: Picea abies Collector: O. Holdenrieder

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate 92153/1


Kerstin Dalman9

text: SLU

text: live

text: Generic

text: Geographic origin: Stors, Hiller*d, Denmark Host: Picea abies Collector: I. Thomsen

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate 92182/1


Kerstin Dalman10

text: SLU

text: live

text: Generic

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate 93030/1


Kerstin Dalman11

text: SLU

text: live

text: Generic

text: Geographic origin: Frossarbo, Sweden Host: Picea abies Collector: J. Stenlid

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate Fr_38-9


Kerstin Dalman12

text: SLU

text: live

text: Generic

text: Geographic origin: England, UK Host: Pinus sylvestris Collector: J. Stenlid

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate AR_18


Kerstin Dalman13

text: SLU

text: live

text: Generic

text: Geographic origin: S*tuna, Sweden Host: Picea abies Collector: J. Stenlid

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate Sa_34-1


Kerstin Dalman14

text: SLU

text: live

text: Generic

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate V12:56_C4


Kerstin Dalman15

text: SLU

text: live

text: Generic

text: Geographic origin: Mj*lby, Sweden Host: Pinus sylvestris Collector: J. Stenlid

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate MJT_155b-4


Kerstin Dalman16

text: SLU

text: live

text: Generic

text: Geographic origin: Vedby, Sweden Host: Larix eurolepis Collector: J. Stenlid

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate V3:47_C-4


Kerstin Dalman17

text: SLU

text: live

text: Generic

text: Geographic origin: Rams*sa, Sweden Host: Picea abies Collector: J. Stenlid

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate Rb_30-3


Kerstin Dalman18

text: SLU

text: live

text: Generic

text: Geographic origin: Negoreloje, Belarus Host: Pinus sylvestris Collector: K. Korhonen

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate 90211/2


Kerstin Dalman19

text: SLU

text: live

text: Generic

text: Geographic origin: Bayern, Happerg, Germany Host: Picea abies Collector: O. Holdenrieder

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate 93014/1


Kerstin Dalman20

text: SLU

text: live

text: Generic

text: Geographic origin: Scotland, UK Host: Picea sitchensis Collector: J. Stenlid

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate FW2-2


Kerstin Dalman21

text: SLU

text: live

text: Generic

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate Sa_16-4


Kerstin Dalman22

text: SLU

text: live

text: Generic

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate L12-1


Kerstin Dalman23

text: SLU

text: live

text: Generic

text: Heterobasidion annosum

text: Heterobasidion annosum s.s. isolate V13:53_C2


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 1/ HotSpot 8a; control without tree, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 1/ HotSpot 9a; control without tree, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 2/ HotSpot 8a; control without tree, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 2/ HotSpot 9a; control without tree, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 15/ HotSpot 8a; control without tree, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 16/ HotSpot 8a; control without tree, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 16/ HotSpot 9a; control without tree, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 3/ HotSpot 8a; treatment with beech saplings, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 3/ HotSpot 9a; treatment with beech saplings, whithout litter,

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 9/ HotSpot 8a; treatment with beech saplings, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 9/ HotSpot 9a; treatment with beech saplings, whithout litter,

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 13/ HotSpot 8a; treatment with beech saplings, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 13/ HotSpot 9a; treatment with beech saplings, whithout litter,

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 6/ HotSpot 8a; treatment with ash saplings, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron6/ HotSpot 9a; treatment with ash saplings, whithout litter,

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 10/ HotSpot 8a; treatment with ash saplings, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 10/ HotSpot 9a; treatment with ash saplings, whithout litter,

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 14/ HotSpot 8a; treatment with ash saplings, with litter

text: environmental samples

text: treated forest soil


text: Georg-August University of Goettingen

text: live

text: Generic

text: soil from rhizotron 14// HotSpot 9a; treatment with ash saplings, whithout litter,

text: environmental samples

text: treated forest soil


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

characteristic: cell line

text: Mus musculus

text: less than 10

characteristic: passage

text: 3T3-L1 differentiated untreated

text: RNA-seq Control rep1

text: differentiated untreated

characteristic: treatment


text: Fraenkel, Biological Engineering, MIT

characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

characteristic: organism

text: less than 10

text: 3T3-L1 differentiated untreated

text: RNA-seq Control rep2

text: differentiated untreated


text: Fraenkel, Biological Engineering, MIT

characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated untreated

text: RNA-seq Control rep3

characteristic: title

text: differentiated untreated


text: Fraenkel, Biological Engineering, MIT

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated TNF

text: RNA-seq TNF rep1

text: differentiated TNF


text: Fraenkel, Biological Engineering, MIT

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated TNF

text: RNA-seq TNF rep2

text: differentiated TNF


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated TNF

text: RNA-seq TNF rep3

text: differentiated TNF


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated Dex

text: RNA-seq Dex rep1

text: differentiated Dex


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated Dex

text: RNA-seq Dex rep2

text: differentiated Dex


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated Dex

text: RNA-seq Dex rep3

text: differentiated Dex


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated HighIns

text: RNA-seq HighIns rep1

text: differentiated HighIns


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated HighIns

text: RNA-seq HighIns rep2

text: differentiated HighIns


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated HighIns

text: RNA-seq HighIns rep3

text: differentiated HighIns


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated Hypoxia

text: RNA-seq Hypoxia rep1

text: differentiated Hypoxia


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated Hypoxia

text: RNA-seq Hypoxia rep2

text: differentiated Hypoxia


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated Hypoxia

text: RNA-seq Hypoxia rep3

text: differentiated Hypoxia


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated untreated

text: DHS-seq Control

text: differentiated untreated


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated TNF

text: DHS-seq TNF

text: differentiated TNF


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated Hypoxia

text: DHS-seq Hypoxia

text: differentiated Hypoxia


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated Dex

text: DHS_seq Dex

text: differentiated Dex


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated Control2

text: DHS_seq Control2

text: differentiated Control2


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated HighIns

text: DHS_seq high insulin

text: differentiated HighIns


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

characteristic: antibody

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated TNF

text: ChIP-seq TNF p65

text: differentiated TNF

text: abcam 7970, lot number GR51446-1

characteristic: vendor/catalog/lot


text: Fraenkel, Biological Engineering, MIT

text: live

text: Generic

text: IgG

text: Mus musculus

text: less than 10

text: 3T3-L1 differentiated TNF

text: ChIP-seq IgG

text: differentiated TNF

text: sc-2027, lot number C0411


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Ovary

characteristic: isolation source

text: Pundamilia nyererei

characteristic: sample name

text: Generic sample from Pundamilia nyererei


characteristic: External Id

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: Liver

text: Pundamilia nyererei

text: Generic sample from Pundamilia nyererei


text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Kidney

text: Pundamilia nyererei

text: Generic sample from Pundamilia nyererei


text: Broad Institute

text: live

text: Generic

text: Generic

text: Testis

text: Pundamilia nyererei

text: Generic sample from Pundamilia nyererei


text: Broad Institute

text: live

text: Generic

text: Generic

text: Sk-m

text: Pundamilia nyererei

text: Generic sample from Pundamilia nyererei


text: Broad Institute

text: live

text: Generic

text: Generic

text: brain

text: Pundamilia nyererei

text: Generic sample from Pundamilia nyererei


text: Broad Institute

text: live

text: Generic

text: Generic

text: Skin

text: Pundamilia nyererei

text: Generic sample from Pundamilia nyererei


text: Broad Institute

text: live

text: Generic

text: Generic

text: Gills

text: Pundamilia nyererei

text: Generic sample from Pundamilia nyererei


text: Broad Institute

text: live

text: Generic

text: Generic

text: Eye

text: Pundamilia nyererei

text: Generic sample from Pundamilia nyererei


text: Broad Institute

text: live

text: Generic

text: Generic

text: Heart

text: Pundamilia nyererei

text: Generic sample from Pundamilia nyererei


text: epigenetic and immune signaling, rockefeller univeristy

text: live

text: Generic

text: Millipore

characteristic: antibody vendor

characteristic: cell line

text: none (uninfected)

characteristic: infected with

text: crosslinked-DNA

characteristic: molecule type

text: Homo sapiens

text: A549 cells

characteristic: time post infection

text: K4me3 0h


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Millipore

text: Flag-NS1 virus

text: crosslinked-DNA

text: Homo sapiens

characteristic: organism

text: A549 cells

text: K4me3 12h

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: anti-RNAP II ctd

characteristic: antibody

text: Abcam

text: none (uninfected)

text: crosslinked-DNA

text: Homo sapiens

text: A549 cells

text: RNAPII 0h


characteristic: External Id

text: live

text: Generic

text: anti-RNAP II ctd

text: Abcam

text: Flag-NS1 virus

text: crosslinked-DNA

text: Homo sapiens

text: A549 cells

text: RNAPII 12h


text: live

text: Generic

characteristic: NCBI submission model

text: Bethyl laboratories

text: none (uninfected)

text: crosslinked-DNA

text: Homo sapiens

text: A549 cells

text: PAF1C 0h


text: live

text: Generic

characteristic: NCBI submission package

text: Bethyl laboratories

text: Flag-NS1 virus

text: crosslinked-DNA

text: Homo sapiens

text: A549 cells

text: PAF1C 12h


text: live

text: Generic

characteristic: SRA accession

text: anti-Flag

text: Sigma

text: none (uninfected)

text: crosslinked-DNA

text: Homo sapiens

text: A549 cells

text: NS1 0h


text: live

text: Generic

text: anti-Flag

text: Sigma

characteristic: antibody vendor

text: Flag-NS1 virus

text: crosslinked-DNA

text: Homo sapiens

text: A549 cells

text: NS1 012h


text: live

text: Generic

text: anti-Flag

text: Sigma

characteristic: cell line

text: Flag-NS1 virus

text: crosslinked-DNA

text: Homo sapiens

text: A549 cells

text: si-CTRL-flu

text: control non-targeting siRNA pool

characteristic: transfected with


text: live

text: Generic

text: anti-Flag

text: Sigma

text: Flag-NS1 virus

characteristic: infected with

text: crosslinked-DNA

characteristic: molecule type

text: Homo sapiens

text: A549 cells

text: siRNA pools targeted to human PAF1


characteristic: INSDC center name

text: live

text: Generic

text: anti-Flag

text: Sigma

text: Flag-NS1 virus

text: crosslinked-DNA

text: Homo sapiens

text: A549 cells

characteristic: time post infection

text: siRNA pools targeted to human CHD1


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: anti-Flag

text: Sigma

text: none (uninfected)

text: crosslinked-DNA

text: Homo sapiens

text: A549 cells

text: si-CTRL-ui

text: control non-targeting siRNA pool


text: live

text: Generic

text: none (uninfected)

text: Ribosomal RNA-depleted total RNA

text: Homo sapiens

characteristic: organism

text: A549 cells

text: RNA-Seq 0h (read 1/2)

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Flag-NS1 virus

text: Ribosomal RNA-depleted total RNA

text: Homo sapiens

text: A549 cells

text: RNA-Seq 12h (read 1/2)


characteristic: External Id

text: live

text: Generic

text: anti-deoxyBrU

characteristic: antibody

text: none (uninfected)

text: Nuclear-Run On RNA

text: Homo sapiens

text: A549 cells

text: GRO-Seq 0h


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: anti-deoxyBrU

text: Flag-NS1 virus

text: Nuclear-Run On RNA

text: Homo sapiens

text: A549 cells

text: GRO-Seq 12h WT


text: live

text: Generic

characteristic: SRA accession

text: anti-deoxyBrU

text: Flag-∆PAF virus

text: Nuclear-Run On RNA

text: Homo sapiens

text: A549 cells

text: GRO-Seq 12h delta-PAF


text: University of California, Davis - Comai Lab

text: live

text: Generic

text: Please refer to the following paper for the origin of this line: Federico Luis Iniguez-Luy, Lewis Lukens, Mark W. Farnham, Richard M. Amasino, Thomas C. Osborn. Development of public immortal mapping populations, molecular markers and linkage maps for rapid cycling Brassica rapa and B. oleracea. Theor Appl Genet (2009) 120:31-43

characteristic: description

text: Brassica oleracea

text: B. Oleracea (TO1000)


text: CIG, UNIL

text: live

text: Generic

text: Santa Cruz Biotechnology

characteristic: chiip antibody manufacturer

characteristic: chip antibody

characteristic: chip antibody catalog number

characteristic: chip antibody lot/batch

text: Mus musculus

text: RPB2 IP

characteristic: strain

text: liver

characteristic: tissue type


text: CIG, UNIL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Abcam

text: Mus musculus

text: H3K4me3 IP

text: liver


text: CIG, UNIL

characteristic: INSDC secondary accession

text: live

text: Generic

text: Abcam

text: Mus musculus

characteristic: organism

text: H3K36me3 IP

text: liver

characteristic: title


characteristic: External Id

text: CIG, UNIL

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: input

text: liver


text: Armstrong Lab, Pediatric Oncology, Dana-Farber Cancer Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: cell line

text: Millipore

characteristic: chip antibody manufacturer

text: Homo sapiens

text: H1 human Embryonic stem cells

text: ES H3K27me3

text: diagnostic sample (pre-treatment)

characteristic: treatment


text: live

text: Generic

characteristic: SRA accession

text: fibroblast derived from H1

characteristic: chip antibody

text: Millipore

text: Homo sapiens

text: Fibroblasts differentiated from H1 ES cells (dH1f)

text: Fibroblast H3K27me3

text: diagnostic sample (pre-treatment)


text: live

text: Generic

text: fibroblast derived from H1

text: Millipore

text: Homo sapiens

text: Fibroblast Epi H3K27me3

text: Cells were treated with 10uM Dot1L inhibitor (EPZ004777) for 5 days


text: live

text: Generic

text: fibroblast derived from H1

text: Millipore

text: Homo sapiens

text: Fibroblast Epi OSKM D6 H3K27me3

text: Cells were treated with 10uM Dot1L inhibitor (EPZ004777) for 5 days and then infected with Oct4, Sox2, Klf4 and c-Myc followed by 6 days of incubation


text: live

text: Generic

text: fibroblast derived from H1

text: Millipore

text: Homo sapiens

text: Fibroblast OSKM D6 H3K27me3

text: Cells were infected with Oct4, Sox2, Klf4 and c-Myc retroviruses followed by 6 days of incubation


text: live

text: Generic

text: Abcam

text: Homo sapiens

text: H1 human Embryonic stem cell

text: ES H3K79me2

text: diagnostic sample (pre-treatment)


text: live

text: Generic

text: fibroblast derived from H1

text: Abcam

text: Homo sapiens

text: Fibroblast H3K79me2

text: diagnostic sample (pre-treatment)


text: live

text: Generic

text: fibroblast derived from H1

text: Abcam

text: Homo sapiens

text: Fibroblast Epi H3K79me2


text: live

text: Generic

text: fibroblast derived from H1

text: Abcam

text: Homo sapiens

text: Fibroblast Epi OSKM D6 H3K79me2


text: live

text: Generic

text: fibroblast derived from H1

text: Abcam

text: Homo sapiens

text: Fibroblast OSKM D6 H3K79me2


text: DOE Joint Genome Institute

text: live

text: Generic

text: Lake Mendota Practice 15JUN2010 epilimnion

characteristic: description

text: freshwater metagenome

characteristic: sample number

text: Generic sample from freshwater metagenome


text: Ceres, Inc.

characteristic: INSDC center name

text: live

text: Generic

text: Plants P101 - P112 are indexed using the following barcode sequences correspondingly: ATCACG CGATGT TTAGGC TGACCA ACAGTG GCCAAT CAGATC ACTTGA GATCAG TAGCTT GGCTAC CTTGTA

text: Miscanthus sinensis

text: Mx2 plants P101-P112


text: Universidade Federal de Minas Gerais

characteristic: INSDC first public

text: live

text: Generic

text: Library produced from bloodstream trypomastigotes collected from acutely infected mice after 2 passages.

text: trypomastigote

characteristic: dev-stage

text: Trypanosoma cruzi

text: CL Brener

characteristic: strain


text: Universidade Federal de Minas Gerais

characteristic: INSDC last update

text: live

text: Generic

text: Library produced from bloodstream trypomastigotes collected from acutely infected mice after 10 passages.

text: trypomastigote

text: Trypanosoma cruzi

characteristic: organism

text: CL Brener


characteristic: External Id

text: Universidade Federal de Minas Gerais

text: live

text: Generic

text: Library produced from tissue culture trypomastigotes derived from LLC-MK2 cells.

text: trypomastigote

text: Trypanosoma cruzi

text: CL Brener

characteristic: title


text: Universidade Federal de Minas Gerais

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Library produced from tissue culture trypomastigotes derived from L6 cells after 4 passages.

text: trypomastigote

text: Trypanosoma cruzi

text: CL Brener


text: Universidade Federal de Minas Gerais

text: live

text: Generic

characteristic: NCBI submission package

text: Library produced from tissue culture trypomastigotes derived from LLC-MK2 cells after 4 passages.

text: trypomastigote

text: Trypanosoma cruzi

text: CL Brener


text: Universidade Federal de Minas Gerais

text: live

text: Generic

text: Library produced from tissue culture trypomastigotes derived from L6 cells after 14 passages.

text: trypomastigote

text: Trypanosoma cruzi

text: CL Brener


text: Universidade Federal de Minas Gerais

text: live

text: Generic

text: Library produced from tissue culture trypomastigotes derived from LLC-MK2 cells after 14 passages.

text: trypomastigote

text: Trypanosoma cruzi

text: CL Brener


text: USDA-ARS-Plant Sciences Institute

text: live

text: Generic

text: somatic

characteristic: cell type

text: Theobroma cacao L.

characteristic: lab-host

text: Moniliophthora roreri

text: mycelium

characteristic: tissue-type

text: M. roreri in planta


text: East China University of Science and Technology

text: live

text: Generic

text: Suppression subtractive hybridization (cDNA obtained from light-induced cells as tester and cDNA obtained from heterotrophic cells as driver)

text: Auxenochlorella pyrenoidosa

text: Chlorella pyrenoidosa forward library


text: live

text: Generic

text: Suppression subtractive hybridization (cDNA obtained from heterotrophic cells as tester and cDNA obtained from light-induced cells as driver)

text: Auxenochlorella pyrenoidosa

text: Chlorella pyrenoidosa reverse library


text: Centro de Biologia Ambiental, Faculdade de Ciencias, Universidade de Lisboa

text: live

text: Generic

text: Bulweria bulwerii

text: blood

text: Bulwer's petrel genomic library


text: live

text: Generic

text: Puffinus baroli

text: blood

text: Barolo Shearwater genomic library


text: BC Centre for Excellence in HIV/AIDS

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Human immunodeficiency virus 1

text: HIV integrase


text: DOE Joint Genome Institute

text: live

text: Generic

text: Switchgrass Rhizosphere Bulk Soil Metagenome

characteristic: description

text: rhizosphere metagenome

characteristic: sample number

text: Generic sample from rhizosphere metagenome


text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Zea mays spp mays W64A

text: Zea mays subsp. mays

text: spp mays W64A

text: Generic sample from Zea mays subsp. mays


text: Biodiversity Research Center, Academia Sinica

text: live

text: Generic

text: Two individuals were collected from the seawall of Shen-Ao Keng, Keelung, Taiwan (25*7'57.21N, 121*49'15.76E) in March 2011.

text: Amphibalanus amphitrite

text: Amphibalanus amphitrite adult


text: Agricultural Biotechnology Research Center, Academia Sinica

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Vegetative library with pooled RNAs from root (1 cm from root tip), stem and leaf was constructed by SMART cDNA Synthesis kit (Clontech, CA, USA) and normalized via DSN (Duplex-specific nuclease, Evrogen, Russia) (Zhulidov et al., 2004) treatment followed by pair-end DNA Sample Preparation Kits (Illumina, CA, USA) which included DNA shearing by sonication, adaptor ligation and DNA enrichment.

text: Phalaenopsis aphrodite

text: root

characteristic: tissue

text: sRNA research


Horn Normal Transcripts

text: Anand Agricultural University

characteristic: INSDC last update

text: live

text: Generic

text: Bos taurus

characteristic: organism

text: Transcriptome profile of healthy horn tissue in Kankrej Bullock


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Generic

text: Deep oil plume Sample 52_in plume

text: marine metagenome

text: Generic sample from marine metagenome

characteristic: title


text: Columbia University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody

text: Origene

characteristic: antibody vendor

text: Homo sapiens


text: Université Claude Bernard Lyon 1

text: live

text: Generic

characteristic: NCBI submission package

text: The PRL tumor was surgically harvested from male patient and was classified into malignant tumor group based on the occurrence of metastases during clinical follow-up. Genetic analysis was performed on frozen fragments that had been stored at -80*C (Neurobiotec Bank, Lyon, France).

text: Homo sapiens

text: agressive-invasive prolactin pituitary tumours 4 DNA sequencing


text: Biological Chemistry, UCLA

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: cell line

text: contact-inhibited IMR90

characteristic: cell type

text: anti-histone H3

characteristic: chip antibody

characteristic: chip antibody catalog number

text: Abcam

characteristic: chip antibody manufacturer

characteristic: infection

text: Homo sapiens

text: 6 to 10

characteristic: passages

text: lung fibroblasts

text: e1a H3K4me1 ChIP-seq


text: Leibniz Institute for Age Research - Fritz Lipmann Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: 8 week

characteristic: age

text: Generic

characteristic: biosamplemodel

text: RNA was isolated from three male and three female Nothobranchius furzeri (strain GRZ), 8 weeks old. The whole bodies were used for isolation using the RNeasy Midi kit (Qiagen).

characteristic: description

text: Nothobranchius furzeri

text: 6 individuals; 3 male + 3 female

characteristic: sample composition

text: mixed

characteristic: sex

text: GRZ

characteristic: strain

text: whole body

characteristic: tissue

text: Nothobranchius furzeri GRZ, six 8w old individuals (male and female), whole body, mRNA


characteristic: External Id

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 10 week

text: Generic

text: RNA was isolated from the whole body of a 10 week old Nothobranchius furzeri (strain GRZ). The RNeasy Midi kit (Qiagen) was used for extraction.

text: Nothobranchius furzeri

characteristic: organism

text: single individual

text: GRZ

text: whole body

text: Nothobranchius furzeri GRZ, 10w, whole body, mRNA

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: 1 week

text: Generic

text: RNA was isolated from three Nothobranchius furzeri (strain GRZ), 1 week old. The whole bodies were used for isolation using the RNeasy Midi kit (Qiagen).

text: Nothobranchius furzeri

text: 3 individuals

text: not determined

text: GRZ

text: whole body

text: Nothobranchius furzeri GRZ, three 1w old individuals, whole body


characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: 5 week

text: Generic

text: RNA was isolated from five male Nothobranchius furzeri (strain GRZ), 5 weeks old. RNA was extracted from skin tissue using the RNeasy Mini kit (Qiagen).

text: Nothobranchius furzeri

text: 5 male individuals

text: male

text: GRZ

text: skin

text: Nothobranchius furzeri GRZ, five 5w old individuals (male), skin, mRNA


text: live

text: Generic

text: 5 week

characteristic: age

text: Generic

characteristic: biosamplemodel

text: RNA was isolated from five male Nothobranchius furzeri (strain GRZ), 5 weeks old. RNA was extracted from brain tissue using the RNeasy Mini kit (Qiagen).

text: Nothobranchius furzeri

text: 5 male individuals

text: male

text: GRZ

text: brain

text: Nothobranchius furzeri GRZ, five 5w old individuals (male), brain, mRNA


text: live

text: Generic

text: 14 week

text: Generic

text: RNA was isolated from three male Nothobranchius furzeri (strain GRZ), 14 weeks old. RNA was extracted from skin tissue using the RNeasy Mini kit (Qiagen).

characteristic: description

text: Nothobranchius furzeri

text: 3 male individuals

characteristic: sample composition

text: male

text: GRZ

text: skin

text: Nothobranchius furzeri GRZ, three 14w old individuals (male), skin, mRNA


text: live

text: Generic

text: 14 week

text: Generic

text: RNA was isolated from three male Nothobranchius furzeri (strain GRZ), 14 weeks old. RNA was extracted from brain tissue using the RNeasy Mini kit (Qiagen).

text: Nothobranchius furzeri

text: 3 male individuals

text: male

characteristic: sex

text: GRZ

characteristic: strain

text: brain

text: Nothobranchius furzeri GRZ, three 14w old individuals (male), brain, mRNA


characteristic: External Id

text: live

text: Generic

text: 5 week

text: Generic

text: RNA was isolated from four male Nothobranchius furzeri (strain MZM-0403), 5 weeks old. RNA was extracted from skin tissue using the RNeasy Mini kit (Qiagen).

text: Nothobranchius furzeri

text: 4 male individuals

text: male

text: skin

characteristic: tissue

text: Nothobranchius furzeri MZM-0403, four 5w old individuals (male), skin, mRNA


text: Leibniz Institute for Age Research - Fritz Lipmann Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 5 week

text: Generic

text: RNA was isolated from five male Nothobranchius furzeri (strain MZM-0403), 5 weeks old. RNA was extracted from brain tissue using the RNeasy Mini kit (Qiagen).

text: Nothobranchius furzeri

text: 5 male individuals

text: male

text: brain

text: Nothobranchius furzeri MZM-0403, five 5w old individuals (male), brain, mRNA


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 31 week

text: Generic

text: RNA was isolated from five male Nothobranchius furzeri (strain MZM-0403), 31 weeks old. RNA was extracted from skin tissue using the RNeasy Mini kit (Qiagen).

text: Nothobranchius furzeri

text: 5 male individuals

text: male

text: skin

text: Nothobranchius furzeri MZM-0403, five 31w old individuals (male), skin, mRNA


text: live

text: Generic

text: 31 week

text: Generic

text: RNA was isolated from three male Nothobranchius furzeri (strain MZM-0403), 31 weeks old. RNA was extracted from brain tissue using the RNeasy Mini kit (Qiagen).

text: Nothobranchius furzeri

characteristic: organism

text: 3 male individuals

text: male

text: brain

text: Nothobranchius furzeri MZM-0403, three 31w old individuals (male), brain, mRNA

characteristic: title


text: PGFE, UMass Medical School

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: HD library

characteristic: library

text: bacterial one-hybrid (B1H) selected

characteristic: library selection

text: synthetic construct

text: synthetic library--HD library

text: tripletTTT


text: PGFE, UMass Medical School

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTTG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTTC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTTA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTGT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTGG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTGC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTGA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTCT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTCG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTCC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTCA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTAT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTAG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTAC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletTAA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGTT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGTG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGTC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGTA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGGT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGGG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGGC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGGA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGCT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGCG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGCC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGCA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGAT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGAG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGAC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletGAA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCTT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCTG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCTC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCTA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCGT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCGG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCGC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCGA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCCT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCCG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCCC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCCA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCAT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCAG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCAC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletCAA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletATT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletATG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletATC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletATA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletAGT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletAGG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletAGC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletAGA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletACT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletACG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletACC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletACA


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletAAT


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletAAG


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletAAC


text: PGFE, UMass Medical School

text: live

text: Generic

text: HD library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--HD library

text: tripletAAA


text: PGFE, UMass Medical School

text: live

text: Generic

text: Z10 library

text: bacterial one-hybrid (B1H) selected

text: synthetic construct

text: synthetic library--Z10 library


Caulobacter sp. AP07

text: Oak Ridge National Laboratory

text: live

text: Generic

text: We sampled P. deltoides at sites along the Caney Fork River in central Tennessee and at Yadkin River in North Carolina, USA. These sites represent ecotypes and soil conditions that are common to this region. Approximately 1,100 diverse bacterial strains were collected to investigate the phylogenetic and functional diversity.

characteristic: description

text: Caulobacter sp. AP07

text: Caulobacter sp. AP07


Novosphingobium sp. AP12

text: Oak Ridge National Laboratory

text: live

text: Generic

text: Novosphingobium sp. AP12

text: Novosphingobium sp. AP12


text: Systems biology research group lab, Bioengineering department, University of California, San Diego

text: live

text: Generic

text: E. coli K12 MG1655 reference genome (NC_000913)

characteristic: genome build

text: Escherichia coli str. K-12 substr. MG1655

text: Cells at mid-log phase (OD600nm 0.5)

text: TSS-Seq

characteristic: strategy

characteristic: substrain

text: E. coli TSS 1


characteristic: External Id

text: live

text: Generic

text: Cells at mid-log phase (OD600nm 0.5)

characteristic: strain

text: TSS-Seq

text: E. coli TSS 2


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: K. pneumoniae MGH78578 reference genome and 5 plasmids (NC_009648, NC_009649, NC_009650, NC_009651, NC_009652, NC_009653)

text: Klebsiella pneumoniae

text: Cells at mid-log phase (OD600nm 0.5)

text: TSS-Seq

text: K. pneumoniae TSS 1


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Klebsiella pneumoniae

text: Cells at mid-log phase (OD600nm 0.5)

text: TSS-Seq

text: K. pneumoniae TSS 2


text: Fisheries College, Ocean University of China

text: live

text: Generic

text: Application of Suppression Subtractive hybridization to construct a subtractive cDNA library from digestive gland of clam Venerupis philippinarum exposed to 2,2',4,4'-tetrabromodiphenyl ether

text: two years old

characteristic: dev-stage

text: Ruditapes philippinarum

characteristic: organism

text: male and female

characteristic: sex

text: digestive gland

characteristic: tissue-type

text: Subtractive cDNA library from Venerupis philippinarum exposed to 2,2',4,4'-tetrabromodiphenyl ether

characteristic: title

text: Plasmid

text: PMD 18-T

characteristic: vector


text: Universita di Torino - Dipartimento di Scienze della Vita e Biologia dei Sistemi

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: cDNA prepared from juvenile and adult stage.

text: Ophryotrocha puerilis

text: hermaphrodite

text: Ophryotrocha puerilis cDNA-SRAP library


text: University College Dublin

text: live

text: Generic

text: mycelia

characteristic: cell type

text: Fusarium oxysporum strain 11C (IMI501118) and 7E (IMI501116) were isolated from Irish soil and deposited in CABI culture collection, UK (formerly IMI). The subtraction library was prepared using a PCR-Select cDNA subtraction kit according to the manufacturer's (Clontech, USA) instructions. Tester and driver cDNAs were prepared from 2 µg of mRNA extracted from F. oxysporum strain 11C and 7E, respectively. The resulting PCR products were subsequently ligated into a vector using the pGEM-T Easy ''TA'' cloning kit (Promega, USA) as per the manufacturer's recommendations. The ligation products of the SSH library were used to transform Escherichia coli (strain DHa) competent cells. Plasmids were extracted and inserts were sequenced using the T7 universal primer.

characteristic: description

text: 24h post-fungal inoculation

text: Fusarium oxysporum

text: Fusarium oxysporum SSH Library

text: Plasmid

text: pGEM-T


characteristic: External Id

text: PHSA Labs

text: live

text: Generic

characteristic: SRA accession

text: Abscess Aspiration Sample from subject E007: the area of the swelling was aspirated with a syringe that had a 16 gauge needle, and expressed into a sterile vial.

text: human oral metagenome


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Aspergillus tubingensis CBS 134.48

text: Aspergillus tubingensis CBS 134.48

characteristic: sample number

text: CBS 134.48

characteristic: strain

text: Generic sample from Aspergillus tubingensis CBS 134.48


text: PHSA Labs

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Abscess Aspiration Sample from subject E010: the area of the swelling was aspirated with a syringe that had a 16 gauge needle, and expressed into a sterile vial

text: human oral metagenome


text: PHSA Labs

text: live

text: Generic

text: Abscess Aspiration Sample from subject E012: the area of the swelling was aspirated with a syringe that had a 16 gauge needle, and expressed into a sterile vial

text: human oral metagenome

characteristic: organism


text: PHSA Labs

text: live

text: Generic

text: Abscess Aspiration Sample from subject E016: the area of the swelling was aspirated with a syringe that had a 16 gauge needle, and expressed into a sterile vial

text: human oral metagenome


text: PHSA Labs

text: live

text: Generic

text: Abscess Aspiration Sample from subject E017: the area of the swelling was aspirated with a syringe that had a 16 gauge needle, and expressed into a sterile vial.

text: human oral metagenome


text: PHSA Labs

text: live

text: Generic

text: Abscess Aspiration Sample from subject E018: the area of the swelling was aspirated with a syringe that had a 16 gauge needle, and expressed into a sterile vial.

text: human oral metagenome


text: PHSA Labs

text: live

text: Generic

text: Abscess Aspiration Sample from subject E019: the area of the swelling was aspirated with a syringe that had a 16 gauge needle, and expressed into a sterile vial.

text: human oral metagenome


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Northern white-cheeked gibbon - captive born, parents wild born

text: Nomascus leucogenys

text: female

characteristic: sex

text: blood

characteristic: source of DNA

text: Generic sample from Nomascus leucogenys


text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Nomascus leucogenys

text: male

text: blood

text: Generic sample from Nomascus leucogenys

characteristic: title


text: Baylor College of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Eastern hoolock gibbon - wild born

text: Hoolock leuconedys

text: male

text: blood

text: Generic sample from Hoolock leuconedys


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Siamang - captive born, parents wild born

characteristic: description

text: Symphalangus syndactylus

text: male

text: blood

text: Generic sample from Symphalangus syndactylus


characteristic: External Id

text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Pileated gibbon - captive born, parents wild born

text: Hylobates pileatus

text: male

text: blood

text: Generic sample from Hylobates pileatus


text: Baylor College of Medicine

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: Siamang - sire wild-born dam captive-born

text: Symphalangus syndactylus

text: female

text: blood


text: Baylor College of Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: Eastern hoolock gibbon - wild born

text: Hoolock leuconedys

text: female

text: blood

text: Generic sample from Hoolock leuconedys


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Javan gibbon - sire wild-born, dam captive-born

text: Hylobates moloch

text: female

text: blood

text: Generic sample from Hylobates moloch


text: PHSA Labs

text: live

text: Generic

text: Root Canal Sample collected from the root canal space of the diseased tooth. After rubber dam isolation, the tooth surface was disinfected with 30% hydrogen peroxide, followed by 5% tincture of iodine, 5.25% sodium hypochlorite and finally 5% sodium thiosulfate to inactivate the halides. The pulp chamber was accessed with #4 round carbide bur followed by an endo Z bur. Canals were identified under a surgical operating microscope. Three Fine paper points were placed in each canal to collect fluids from the canal space. If purulence or serous fluid was present in the canal, this was directly sampled with three fine size paper points followed by a sterile file to the working length, as indicated by an apex locator and then aseptically separated into the sampling vial. In multicanaled teeth, one paper point sample was obtained from each canal unless the canals were very calcified, in which case sampling of the canal root with the largest periapical lesion and the largest canal was sampled. If the canal was dry, sterile saline was added, the biofilm disrupted with a file, and the file together with three paper points were similarly sampled. The file and paper points were placed in sterile, DNA- and RNA-free vials containing 1.5mL of filter sterilized 10mM Tris-HCl, (pH 8.0).

text: human oral metagenome

text: E007_root canal


text: PHSA Labs

text: live

text: Generic

text: human oral metagenome

text: E009_root canal


text: PHSA Labs

text: live

text: Generic

text: human oral metagenome

text: E010_root canal


text: PHSA Labs

text: live

text: Generic

text: human oral metagenome

text: E012_root canal


text: PHSA Labs

text: live

text: Generic

text: human oral metagenome

text: E016_root canal


text: PHSA Labs

text: live

text: Generic

text: human oral metagenome

text: E017_root canal


text: PHSA Labs

text: live

text: Generic

text: human oral metagenome

text: E018_root canal


text: PHSA Labs

text: live

text: Generic

text: human oral metagenome

text: E019_root canal


text: PHSA Labs

text: live

text: Generic

text: Total Oral Sample was collected from the subjects by rubbing 3 fine paper points again patient's cheek mucosa, lateral boarder of the tongue and supragingival plaque at the contra lateral side away from the affected tooth.

text: human oral metagenome


text: DOE Joint Genome Institute

text: live

text: Generic

text: Switchgrass Rhizo bact communities RL3

text: soil metagenome

characteristic: sample number

text: Generic sample from soil metagenome


TF

text: Biodiversity Research Center, Academia Sinica

text: live

text: Generic

text: One individual was collected from the rocky shore of Shen-Ao Keng, Keelung, Taiwan (25*7'25.24N, 121*49'11.26E) in March 2011.

text: Tetraclita japonica

text: Tetraclita japonica formosana adult


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Deinococcus hopiensis KR-140

text: Deinococcus hopiensis KR-140

characteristic: strain

text: Generic sample from Deinococcus hopiensis KR-140


BB1.1 Bacteria

text: Charles Darwin University

text: live

characteristic: INSDC status

text: Generic

text: Coastal sediments close to Bing Bong Creek, Gulf of Carpentaria, Northern Territory, Australia. Map co-ordinates S 15*37'02.8 E 136*22'35.6. Coastal marine sediment collected up to 10cm depth with a Van Veen sediment grab. Sediment was sandy adjacent to mangrove, with Eh readings between 7 and -163meV. Neutral to slightly alkaline pH, organic carbon content 0.2 - 0.9%. Total DNA was extracted from sediment and PCR amplified using primers specific for bacterial 16S rRNA.

text: uncultured marine bacterium

text: Bing Bong Site 1 Bacteria Duplicate 1