PRJNA47439.Dinsdale 03

text: Broad Institute

text: live

text: Generic

text: Pt Loma San Diego

text: DNA:ds Viral DNA

text: marine metagenome

text: Dinsdale 03

text: Uncultured virus

text: Kelp + seawater - CO2

text: Generic sample from marine metagenome


PRJNA47439.Dinsdale 01

status: PUBLIC

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: collection date

text: Pt Loma San Diego

text: DNA:ds Viral DNA

characteristic: isolation source

text: marine metagenome

characteristic: organism

text: Dinsdale 01

characteristic: sample name

text: Uncultured virus

characteristic: specific host

text: Sea water no CO2 and no kelp - baseline

characteristic: strain

text: Generic sample from marine metagenome

characteristic: title


text: Broad Institute

text: live

text: Generic

text: Raunefjorden

text: DNA:ds Viral DNA

text: marine metagenome

text: Uncultured virus

text: Generic sample from marine metagenome


text: Broad Institute

text: live

text: Generic

text: Babs Cove

text: DNA:ds Viral DNA

text: marine sediment metagenome

text: SED

text: Uncultured virus

text: Appledore Island sediment

text: Generic sample from marine sediment metagenome


name: PRJNA52297.NL10_2010-02 RNA viral metagenome

text: Broad Institute

text: live

text: Generic

text: Yellowstone National Park

text: DNA:ds Viral DNA

text: hot springs metagenome

text: NL10_2010-02 RNA viral metagenome

text: Uncultured virus

text: multiple hosts NL10_2010-02 RNA

text: Generic sample from hot springs metagenome


name: PRJNA52297.NL17_2009-10 DNA viral metagenome

text: Broad Institute

text: live

text: Generic

text: Yellowstone National Park

text: DNA:ds Viral DNA

text: hot springs metagenome

text: NL17_2009-10 DNA viral metagenome

text: Uncultured virus

text: multiple hosts NL17_2009-10 DNA


PRJNA47455.142/01/15.5m Virome

text: Broad Institute

text: live

text: Generic

text: Argentine Sea

text: DNA:ds Viral DNA

text: marine metagenome

text: 142/01/15.5m Virome

text: Uncultured virus

text: Generic sample from marine metagenome


PRJNA52289.ANOVIR CBAY 3

text: Broad Institute

text: live

text: Generic

text: Chesapeake bay station 858

text: DNA:ds Viral DNA

text: marine metagenome

text: ANOVIR CBAY 3

text: Uncultured virus

text: Viral metagenome ANOVIR Chesapeake Bay 3

text: Generic sample from marine metagenome


PRJNA52289.ANOVIR CBAY 2

text: Broad Institute

text: live

text: Generic

text: Chesapeake bay station 858

text: DNA:ds Viral DNA

text: marine metagenome

text: ANOVIR CBAY 2

text: Uncultured virus

text: Viral metagenome ANOVIR Chesapeake Bay 2

text: Generic sample from marine metagenome


text: Broad Institute

text: live

text: Generic

text: Pacific Ocean

text: DNA:ds Viral DNA

text: marine metagenome

text: Uncultured virus

text: Pacific Ocean Metagenome 3

text: Generic sample from marine metagenome


text: Broad Institute

text: live

text: Generic

text: Pacific Ocean

text: DNA:ds Viral DNA

text: marine metagenome

text: Uncultured virus

text: Pacific Ocean Metagenome 5

text: Generic sample from marine metagenome


text: Broad Institute

text: live

text: Generic

text: Rifle DOE IFRC, Rifle Colorado

text: DNA:ds Viral DNA

text: freshwater metagenome

text: Uncultured virus

text: Viral Freshwater Metagenome RIFCO

text: Generic sample from freshwater metagenome


text: Rob Mitra, Genetics, Washington University School of Medicine

text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: MATa /MATα his3∆1/ his3∆1 leu2∆0/ leu2∆0 ura3∆0/ ura3∆0 met15∆0/MET15 LYS2/lys2∆0 sir4::KanMX/ sir4::KanMX trp1::Hyg/ trp1::Hyg

text: Background Strain (Sir4 KO) Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Positive Control Gal4 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Positive Control Leu3 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Positive Control Gcn4 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 1 Gal4 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 1 Kar4 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 1 Lee1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 1 Rgm1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 1 Rpi1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 1 Sef1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 1 Sfg1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 1 Yrm1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 2 Gal4 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 2 Kar4 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 2 Lee1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 2 Rgm1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 2 Rpi1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 2 Sef1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 2 Sfg1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Multiplex Rep 2 Yrm1 Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: MATa his3∆1 leu2∆0 ura3∆0 met15∆0 sir4::KanMX trp1::Hyg THI2::sir4

text: Condition Thi2 - Complete media - Insertions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: His+ FOAr colonies

text: Condition Thi2 - Thiamine starved - Insertions


text: Boffelli, Center for Genetics, CHORI

text: live

text: Generic

characteristic: cell line name

text: Homo sapiens

characteristic: passages

text: Fetal lung fibroblasts


characteristic: External Id

text: modENCODE DCC, Ontario Institute for Cancer Research

characteristic: INSDC center name

text: live

text: Generic

characteristic: developmental stage

characteristic: genotype

text: Caenorhabditis elegans

text: hermaphrodite

characteristic: sex

text: Snyder_MAB5_POLII_L3_rep1 extraction1_seq1 channel_1

text: OP26(made_by : R. Waterston and S. Kim description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The MAB-5::EGFP fusion protein is expressed in the correct mab-5 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the MAB-5 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119(ed3) III; wgIs26 [unc-119(+) mab-5::TY1::EGFP::3xFLAG] official name : OP26 )

text: Snyder_MAB5_POLII_L3_rep1 extraction1_seq1 aliquote 1


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: unc-119(ed3) III; wgIs26 [unc-119(+) mab-5::TY1::EGFP::3xFLAG]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_MAB5_POLII_L3_rep1 extraction1_seq1 channel_2

text: Snyder_MAB5_POLII_L3_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Caenorhabditis elegans

characteristic: organism

text: hermaphrodite

text: Snyder_MAB5_POLII_L3_rep2 extraction2_seq1 channel_1

text: Snyder_MAB5_POLII_L3_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_MAB5_POLII_L3_rep2 extraction2_seq1 channel_2

characteristic: strain

text: Snyder_MAB5_POLII_L3_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-11_GFP_L2_rep1 extraction1_seq1 channel_1

text: OP62(made_by : R Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The LIN-11::EGFP fusion protein is expressed in the correct lin-11 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the LIN-11 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119(ed3) III; wgIs62 [unc-119(+) lin-11::TY1::EGFP::3xFLAG] official name : OP62 )

text: Snyder_LIN-11_GFP_L2_rep1 extraction1_seq1 aliquote 1

characteristic: title


text: live

text: Generic

text: unc-119(ed3) III; wgIs62 [unc-119(+) lin-11::TY1::EGFP::3xFLAG]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-11_GFP_L2_rep1 extraction1_seq1 channel_2

text: Snyder_LIN-11_GFP_L2_rep1 extraction1_seq1 aliquote 2


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-11_GFP_L2_rep2 extraction2_seq1 channel_1

text: Snyder_LIN-11_GFP_L2_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-11_GFP_L2_rep2 extraction2_seq1 channel_2

text: Snyder_LIN-11_GFP_L2_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-130_GFP_L1_rep1 extraction1_seq1 channel_1

text: OP77(made_by : R. Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The UNC-130::EGFP fusion protein is expressed in the correct unc-130 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the UNC-130 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119(ed3) III; wgIs77 [unc-119(+) unc-130::TY1::EGFP::3xFLAG] official name : OP77 )

text: Snyder_UNC-130_GFP_L1_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: unc-119(ed3) III; wgIs77 [unc-119(+) unc-130::TY1::EGFP::3xFLAG]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-130_GFP_L1_rep1 extraction1_seq1 channel_2

text: Snyder_UNC-130_GFP_L1_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-130_GFP_L1_rep2 extraction2_seq1 channel_1

text: Snyder_UNC-130_GFP_L1_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-130_GFP_L1_rep2 extraction2_seq1 channel_2

text: Snyder_UNC-130_GFP_L1_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_HLH-1_GFP_emb_rep1 extraction1_seq1 channel_1

text: OP64(made_by : R. Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The HLH-1::EGFP fusion protein is expressed in the correct hlh-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the HLH-1 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119(ed3) III; wgIs64 [unc-119(+) hlh-1::TY1::EGFP::3xFLAG] official name : OP64 )

text: Snyder_HLH-1_GFP_emb_rep1 extraction1_seq1 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: embryo

text: unc-119(ed3) III; wgIs64 [unc-119(+) hlh-1::TY1::EGFP::3xFLAG]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_HLH-1_GFP_emb_rep1 extraction1_seq1 channel_2

text: Snyder_HLH-1_GFP_emb_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_HLH-1_GFP_emb_rep2 extraction2_seq1 channel_1

text: Snyder_HLH-1_GFP_emb_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_HLH-1_GFP_emb_rep2 extraction2_seq1 channel_2

text: Snyder_HLH-1_GFP_emb_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-39-GFP_L3_rep1 extraction1_seq1 channel_1

text: OP18(made_by : R. Waterston and S. Kim description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The LIN-39::EGFP fusion protein is expressed in the correct lin-39 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the LIN-39 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119(ed3) III; wgIs18 [unc-119(+) lin-39::TY1::EGFP::3xFLAG] official name : OP18 )

text: Snyder_LIN-39-GFP_L3_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: unc-119(ed3) III; wgIs18 [unc-119(+) lin-39::TY1::EGFP::3xFLAG]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-39-GFP_L3_rep1 extraction1_seq1 channel_2

text: Snyder_LIN-39-GFP_L3_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-39-GFP_L3_rep2 extraction2_seq1 channel_1

text: Snyder_LIN-39-GFP_L3_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-39-GFP_L3_rep2 extraction2_seq1 channel_2

text: Snyder_LIN-39-GFP_L3_rep2 extraction2_seq1 aliquote 2


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_NHR-6_GFP_L2_rep1 extraction1_seq1 channel_1

text: OP90(made_by : R. Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The NHR-6::EGFP fusion protein is expressed in the correct nhr-6 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the NHR-6 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119(ed3) III; wgIs90 [unc-119(+) nhr-6::TY1::EGFP::3xFLAG] official name : OP90 )

text: Snyder_NHR-6_GFP_L2_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: unc-119(ed3) III; wgIs90 [unc-119(+) nhr-6::TY1::EGFP::3xFLAG]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_NHR-6_GFP_L2_rep1 extraction1_seq1 channel_2

text: Snyder_NHR-6_GFP_L2_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_NHR-6_GFP_L2_rep2 extraction2_seq1 channel_1

text: Snyder_NHR-6_GFP_L2_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_NHR-6_GFP_L2_rep2 extraction2_seq1 channel_2

text: Snyder_NHR-6_GFP_L2_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: early embryo

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_eemb_rep1 extraction1_seq1 channel_1

text: N2(genotype : wild type genotype : DR subclone of DB original (Tc1 pattern I) official name : N2 )

text: Snyder_N2_POLII_eemb_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: early embryo

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_eemb_rep1 extraction1_seq1 channel_2

text: Snyder_N2_POLII_eemb_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: early embryo

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_eemb_rep2 extraction2_seq1 channel_1

text: Snyder_N2_POLII_eemb_rep2 extraction2_seq1 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: early embryo

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_eemb_rep2 extraction2_seq1 channel_2

text: Snyder_N2_POLII_eemb_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: late embryo 20dC 4.5 hrs post-early embryo

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_lemb_rep1 extraction1_seq1 channel_1

text: Snyder_N2_POLII_lemb_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_lemb_rep1 extraction1_seq1 channel_2

text: Snyder_N2_POLII_lemb_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_lemb_rep2 extraction2_seq1 channel_1

text: Snyder_N2_POLII_lemb_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_lemb_rep2 extraction2_seq1 channel_2

text: Snyder_N2_POLII_lemb_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: fed L1

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L1_rep1 extraction1_seq1 channel_1

text: N2(genotype : wild type genotype : DR subclone of DB original (Tc1 pattern I) official name : N2 )

text: Snyder_N2_POLII_L1_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L1_rep1 extraction1_seq1 channel_2

text: Snyder_N2_POLII_L1_rep1 extraction1_seq1 aliquote 2


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: fed L1

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L1_rep2 extraction2_seq1 channel_1

text: Snyder_N2_POLII_L1_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L1_rep2 extraction2_seq1 channel_2

text: Snyder_N2_POLII_L1_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L2_rep1 extraction1_seq1 channel_1

text: Snyder_N2_POLII_L2_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L2_rep1 extraction1_seq1 channel_2

text: Snyder_N2_POLII_L2_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L2_rep2 extraction2_seq1 channel_1

text: Snyder_N2_POLII_L2_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L2_rep2 extraction2_seq1 channel_2

text: Snyder_N2_POLII_L2_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L3_rep1 extraction1_seq1 channel_1

text: N2(genotype : wild type genotype : DR subclone of DB original (Tc1 pattern I) official name : N2 )

text: Snyder_N2_POLII_L3_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L3_rep1 extraction1_seq1 channel_2

text: Snyder_N2_POLII_L3_rep1 extraction1_seq1 aliquote 2


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L3_rep2 extraction2_seq1 channel_1

text: Snyder_N2_POLII_L3_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L3_rep2 extraction2_seq1 channel_2

text: Snyder_N2_POLII_L3_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: Young Adult

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_YA_rep1 extraction1_seq1 channel_1

text: Snyder_N2_POLII_YA_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: Young Adult

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_YA_rep1 extraction1_seq1 channel_2

text: Snyder_N2_POLII_YA_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: Young Adult

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_YA_rep2 extraction2_seq1 channel_1

text: Snyder_N2_POLII_YA_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: Young Adult

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_YA_rep2 extraction2_seq1 channel_2

text: Snyder_N2_POLII_YA_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L4_rep1 extraction1_seq1 channel_1

text: N2(genotype : wild type genotype : DR subclone of DB original (Tc1 pattern I) official name : N2 )

text: Snyder_N2_POLII_L4_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L4_rep1 extraction1_seq1 channel_2

text: Snyder_N2_POLII_L4_rep1 extraction1_seq1 aliquote 2


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L4_rep2 extraction2_seq1 channel_1

text: Snyder_N2_POLII_L4_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: wild type

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_N2_POLII_L4_rep2 extraction2_seq1 channel_2

text: Snyder_N2_POLII_L4_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_GEI11_GFP_L4_rep1 extraction1_seq1 channel_1

text: OP179(made_by : R. Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The GEI-11::EGFP fusion protein is expressed in the correct gei-11 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the GEI-11 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119(ed3) III; wgIs179 [unc-119(+) gei-11::TY1::EGFP::3xFLAG] official name : OP179 )

text: Snyder_GEI11_GFP_L4_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: unc-119(ed3) III; wgIs179 [unc-119(+) gei-11::TY1::EGFP::3xFLAG]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_GEI11_GFP_L4_rep1 extraction1_seq1 channel_2

text: Snyder_GEI11_GFP_L4_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_GEI11_GFP_L4_rep2 extraction2_seq1 channel_1

text: Snyder_GEI11_GFP_L4_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_GEI11_GFP_L4_rep2 extraction2_seq1 channel_2

text: Snyder_GEI11_GFP_L4_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: late embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PHA4_GFP_lemb_rep1 extraction1_seq1 channel_1

text: OP37(made_by : R. Waterston and S. Kim description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The PHA-4::EGFP fusion protein is expressed in the correct pha-4 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the PHA-4 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119(ed3) III; wgIs37 [unc-119(+) pha-4::TY1::EGFP::3xFLAG] official name : OP37 )

text: Snyder_PHA4_GFP_lemb_rep1 extraction1_seq1 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: late embryo

text: unc-119(ed3) III; wgIs37 [unc-119(+) pha-4::TY1::EGFP::3xFLAG]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PHA4_GFP_lemb_rep1 extraction1_seq1 channel_2

text: Snyder_PHA4_GFP_lemb_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: late embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PHA4_GFP_lemb_rep2 extraction2_seq1 channel_1

text: Snyder_PHA4_GFP_lemb_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: late embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PHA4_GFP_lemb_rep2 extraction2_seq1 channel_2

text: Snyder_PHA4_GFP_lemb_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: embryo

text: unc119(ed3);wgIs70(mep-1::TY1 EGFP FLAG C;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_MEP-1_GFP_emb_rep1 extraction1_seq1 channel_1

text: OP70(made_by : R Waterston tags : GFP::3xFlag mutagen : Bombard genotype : unc119(ed3); wgIs70(mep-1::TY1 EGFP FLAG C; unc119) official name : WBGene00003218 )

text: Snyder_MEP-1_GFP_emb_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_MEP-1_GFP_emb_rep1 extraction1_seq1 channel_2

text: Snyder_MEP-1_GFP_emb_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_MEP-1_GFP_emb_rep2 extraction2_seq1 channel_1

text: Snyder_MEP-1_GFP_emb_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_MEP-1_GFP_emb_rep2 extraction2_seq1 channel_2

text: Snyder_MEP-1_GFP_emb_rep2 extraction2_seq1 aliquote 2


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_MDL-1_GFP_L1_rep1 extraction1_seq1 channel_1

text: OP106(made_by : R Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The MDL-1::EGFP fusion protein is expressed in the correct mdl-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the MDL-1 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119 (ed3) III; wgIs106 [mdl-1::TY1::EGFP::FLAG; unc-119(+))] official name : OP106 )

text: Snyder_MDL-1_GFP_L1_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: unc-119 (ed3) III; wgIs106 [mdl-1::TY1::EGFP::FLAG; unc-119(+))]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_MDL-1_GFP_L1_rep1 extraction1_seq1 channel_2

text: Snyder_MDL-1_GFP_L1_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_MDL-1_GFP_L1_rep2 extraction2_seq1 channel_1

text: Snyder_MDL-1_GFP_L1_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_MDL-1_GFP_L1_rep2 extraction2_seq1 channel_2

text: Snyder_MDL-1_GFP_L1_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: unc119(ed3);wgIs184(lin-15B::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-15B_GFP_L3_rep1 extraction1_seq1 channel_1

text: OP184(made_by : S Kim description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The LIN-15B::EGFP fusion protein is expressed in the correct lin-15B spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the LIN-15B transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc119(ed3); wgIs184(lin-15B::TY1 EGFP FLAG; unc119) official name : OP184 )

text: Snyder_LIN-15B_GFP_L3_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-15B_GFP_L3_rep1 extraction1_seq1 channel_2

text: Snyder_LIN-15B_GFP_L3_rep1 extraction1_seq1 aliquote 2


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-15B_GFP_L3_rep2 extraction2_seq1 channel_1

text: Snyder_LIN-15B_GFP_L3_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-15B_GFP_L3_rep2 extraction2_seq1 channel_2

text: Snyder_LIN-15B_GFP_L3_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_BLMP-1_GFP_L1_rep1 extraction1_seq1 channel_1

text: OP109(made_by : R Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The BLMP-1::EGFP fusion protein is expressed in the correct blmp-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the BLMP-1 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119 (ed3) III; wgIs109 [blmp-1::TY1::EGFP::FLAG; unc-119 (+)] official name : OP109 )

text: Snyder_BLMP-1_GFP_L1_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: unc-119 (ed3) III; wgIs109 [blmp-1::TY1::EGFP::FLAG; unc-119 (+)]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_BLMP-1_GFP_L1_rep1 extraction1_seq1 channel_2

text: Snyder_BLMP-1_GFP_L1_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_BLMP-1_GFP_L1_rep2 extraction2_seq1 channel_1

text: Snyder_BLMP-1_GFP_L1_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_BLMP-1_GFP_L1_rep2 extraction2_seq1 channel_2

text: Snyder_BLMP-1_GFP_L1_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-13_GFP_emb_rep1 extraction1_seq1 channel_1

text: OP51(made_by : R Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The LIN-13::EGFP fusion protein is expressed in the correct LIN-13 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the LIN-13 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119 (ed3) III; wgIs73 [lin-13::TY1::EGFP::FLAG; unc-119 (+)] official name : OP51 )

text: Snyder_LIN-13_GFP_emb_rep1 extraction1_seq1 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: embryo

text: unc-119 (ed3) III; wgIs73 [lin-13::TY1::EGFP::FLAG; unc-119 (+)]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-13_GFP_emb_rep1 extraction1_seq1 channel_2

text: Snyder_LIN-13_GFP_emb_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-13_GFP_emb_rep2 extraction2_seq1 channel_1

text: Snyder_LIN-13_GFP_emb_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_LIN-13_GFP_emb_rep2 extraction2_seq1 channel_2

text: Snyder_LIN-13_GFP_emb_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ELT-3_GFP_L1_rep1 extraction1_seq1 channel_1

text: OP75(made_by : R Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The ELT-3::EGFP fusion protein is expressed in the correct elt-3 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the ELT-3 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119 (ed3) III; wgIs75 [elt-3::TY1::EGFP::FLAG; unc-119 (+)] official name : OP75 )

text: Snyder_ELT-3_GFP_L1_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: unc-119 (ed3) III; wgIs75 [elt-3::TY1::EGFP::FLAG; unc-119 (+)]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ELT-3_GFP_L1_rep1 extraction1_seq1 channel_2

text: Snyder_ELT-3_GFP_L1_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ELT-3_GFP_L1_rep2 extraction2_seq1 channel_1

text: Snyder_ELT-3_GFP_L1_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ELT-3_GFP_L1_rep2 extraction2_seq1 channel_2

text: Snyder_ELT-3_GFP_L1_rep2 extraction2_seq1 aliquote 2


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: late embryo

text: unc119(ed3);wgIs120(ceh-30::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_CEH-30_GFP_lemb_rep1 extraction1_seq1 channel_1

text: OP120(made_by : R Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CEH-30::EGFP fusion protein is expressed in the correct ceh-30 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CEH-30 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc119(ed3); wgIs120(ceh-30::TY1 EGFP FLAG; unc119) official name : OP120 )

text: Snyder_CEH-30_GFP_lemb_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: late embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_CEH-30_GFP_lemb_rep1 extraction1_seq1 channel_2

text: Snyder_CEH-30_GFP_lemb_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: late embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_CEH-30_GFP_lemb_rep2 extraction2_seq1 channel_1

text: Snyder_CEH-30_GFP_lemb_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: late embryo

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_CEH-30_GFP_lemb_rep2 extraction2_seq1 channel_2

text: Snyder_CEH-30_GFP_lemb_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: fed L1

text: unc119(ed3);wgIs177(egl-27::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_EGL-27_GFP_L1_rep1 extraction1_seq1 channel_1

text: OP177(made_by : S Kim description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The EGL-27::EGFP fusion protein is expressed in the correct egl-27 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the EGL-27 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc119(ed3); wgIs177(egl-27::TY1 EGFP FLAG; unc119) official name : OP177 )

text: Snyder_EGL-27_GFP_L1_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_EGL-27_GFP_L1_rep1 extraction1_seq1 channel_2

text: Snyder_EGL-27_GFP_L1_rep1 extraction1_seq1 aliquote 2


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_EGL-27_GFP_L1_rep2 extraction2_seq1 channel_1

text: Snyder_EGL-27_GFP_L1_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_EGL-27_GFP_L1_rep2 extraction2_seq1 channel_2

text: Snyder_EGL-27_GFP_L1_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: fed L1

text: unc119(ed3);wgIs178(skn-1::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_SKN-1_GFP_L1_rep1 extraction1_seq1 channel_1

text: OP178(made_by : S Kim tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc119(ed3); wgIs178(skn-1::TY1 EGFP FLAG; unc119) official name : WBGene00004804 )

text: Snyder_SKN-1_GFP_L1_rep1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_SKN-1_GFP_L1_rep1 extraction1_seq1 channel_2

text: Snyder_SKN-1_GFP_L1_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_SKN-1_GFP_L1_rep2 extraction2_seq1 channel_1

text: Snyder_SKN-1_GFP_L1_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_SKN-1_GFP_L1_rep2 extraction2_seq1 channel_2

text: Snyder_SKN-1_GFP_L1_rep2 extraction2_seq1 aliquote 2


text: live

text: Generic

text: unc119(ed3);wgIs201(pqm-1::TY1 EGFP FLAG C;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PQM-1_GFP_L3_rep1 extraction1_seq1 channel_1

text: OP201(made_by : S Kim description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The PQM-1::EGFP fusion protein is expressed in the correct pqm-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the PQM-1 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc119(ed3); wgIs201(pqm-1::TY1 EGFP FLAG C; unc119) official name : OP201 )

text: Snyder_PQM-1_GFP_L3_rep1 extraction1_seq1 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PQM-1_GFP_L3_rep1 extraction1_seq1 channel_2

text: Snyder_PQM-1_GFP_L3_rep1 extraction1_seq1 aliquote 2


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PQM-1_GFP_L3_rep2 extraction2_seq1 channel_1

text: Snyder_PQM-1_GFP_L3_rep2 extraction2_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PQM-1_GFP_L3_rep2 extraction2_seq1 channel_2

text: Snyder_PQM-1_GFP_L3_rep2 extraction2_seq1 aliquote 2


text: Marine Biological Laboratory

text: live

text: Generic

characteristic: chlorophyll

characteristic: collection date

text: French Polynesia

characteristic: country

characteristic: density

characteristic: depth

characteristic: depth end

characteristic: depth start

text: top 50 m

characteristic: environment

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: sea water [ENVO:00002149]

characteristic: fluorescence

text: offshore area [ENVO:00000090]

characteristic: lat

characteristic: lat lon

characteristic: lon

text: 40 nautical miles North of Oponohu Bay, Moorea

text: water column

characteristic: material type

text: South Pacific

text: marine metagenome

characteristic: phosphate

text: oxic

characteristic: salinity

text: summer;rainy season

characteristic: season

characteristic: temp


characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: ammonium

characteristic: chlorophyll

text: French Polynesia

text: top 50 m

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: sea water [ENVO:00002149]

text: Fore Reef

text: LTER 1

text: water column

text: South Pacific

text: marine metagenome

characteristic: organism

text: oxic

text: summer;rainy season

characteristic: silicate

characteristic: title


text: Marine Biological Laboratory

text: live

text: Generic

characteristic: collection date

text: French Polynesia

characteristic: country

characteristic: density

characteristic: depth

characteristic: depth end

characteristic: depth start

text: top 50 m

characteristic: environment

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: sea water [ENVO:00002149]

characteristic: fluorescence

text: offshore area [ENVO:00000090]

characteristic: lat

characteristic: lat lon

characteristic: lon

text: 60 miles North of Moorea, heading West

text: water column

characteristic: material type

text: South Pacific

text: marine metagenome

characteristic: phosphate

text: oxic

characteristic: salinity

text: summer;rainy season


characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: ammonium

characteristic: chlorophyll

text: French Polynesia

text: top 50 m

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: sea water [ENVO:00002149]

text: fringing reef [ENVO:00000130]

text: Fringe 1

text: water column

text: South Pacific

text: marine metagenome

characteristic: organism

text: oxic

text: summer;rainy season

characteristic: season

characteristic: temp


text: Marine Biological Laboratory

text: live

text: Generic

characteristic: collection date

text: French Polynesia

characteristic: country

characteristic: density

characteristic: depth

characteristic: depth end

characteristic: depth start

text: top 50 m

characteristic: environment

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: sea water [ENVO:00002149]

characteristic: fluorescence

text: lagoon [ENVO:00000038]

characteristic: lat

characteristic: lat lon

characteristic: lon

text: Lagoon 1

text: water column

characteristic: material type

text: South Pacific

text: marine metagenome

text: oxic

text: summer;rainy season

characteristic: silicate

characteristic: title


characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: chlorophyll

text: French Polynesia

text: top 200 m

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: sea water [ENVO:00002149]

text: offshore area [ENVO:00000090]

text: 1 mile North of Oponohu Bay, Moorea

text: water column

text: South Pacific

text: marine metagenome

characteristic: organism

characteristic: phosphate

text: oxic

characteristic: salinity

text: summer;rainy season


text: Marine Biological Laboratory

text: live

text: Generic

characteristic: ammonium

characteristic: collection date

text: French Polynesia

characteristic: country

characteristic: density

characteristic: depth

characteristic: depth end

characteristic: depth start

text: top 50 m

characteristic: environment

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: sea water [ENVO:00002149]

characteristic: fluorescence

text: Cooks Bay

characteristic: lat

characteristic: lat lon

characteristic: lon

text: Cooks Bay

text: water column

text: South Pacific

text: marine metagenome

text: oxic

text: summer;rainy season

characteristic: season

characteristic: temp


characteristic: External Id

text: Marine Biological Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: chlorophyll

text: French Polynesia

text: top 50 m

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: sea water [ENVO:00002149]

text: offshore area [ENVO:00000090]

text: Offshore 1, 5K Offshore

text: water column

characteristic: material type

text: South Pacific

text: marine metagenome

characteristic: organism

text: oxic

text: summer;rainy season

characteristic: silicate

characteristic: title


text: Marine Biological Laboratory

text: live

text: Generic

characteristic: collection date

text: French Polynesia

characteristic: country

characteristic: density

characteristic: depth

characteristic: depth end

characteristic: depth start

text: top 50 m

characteristic: environment

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: sea water [ENVO:00002149]

characteristic: fluorescence

text: offshore area [ENVO:00000090]

characteristic: lat

characteristic: lat lon

characteristic: lon

text: 1 mile North of Oponohu Bay, Moorea

text: water column

text: South Pacific

text: marine metagenome

characteristic: phosphate

text: oxic

characteristic: salinity

text: summer;rainy season


Leptothrix ochracea genotype sequences

characteristic: External Id

text: Bigelow Laboratory for Ocean Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental samples

text: Leptothrix ochracea genotype


PRJNA28331.Prevotella histicola F0411

text: Broad Institute

text: live

text: Generic

characteristic: collection date

text: Prevotella histicola F0411

characteristic: organism

text: Prevotella histicola F0411

characteristic: sample name

characteristic: strain

text: Generic sample from Prevotella histicola F0411

characteristic: title


PRJNA28331.Prevotella micans

text: Broad Institute

text: live

text: Generic

text: Prevotella micans F0438

text: Prevotella micans

text: Generic sample from Prevotella micans F0438


PRJNA28331.oral taxon 644 SEQF 1703

text: Broad Institute

text: live

text: Generic

text: Streptococcus intermedius F0413

text: oral taxon 644 SEQF 1703

text: Generic sample from Streptococcus intermedius F0413


text: Broad Institute

text: live

text: Generic

text: Streptococcus intermedius F0395

text: Streptococcus intermedius F0395

text: Generic sample from Streptococcus intermedius F0395


text: Research Institute of Physico-Chemical Medicine

text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 2 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

characteristic: description

text: Homo sapiens

text: hs, 100nt, s1, ctx


Helisoma trivolvis

text: UF-LM

text: live

text: Generic

text: Sample collected in collaboration with Dr. Vincent Rehder/Georgia State University, Atlanta GA Two libraries were constructed from the CNS of 1 animal,Buccal ganglion of 1 animal

text: Planorbella trivolvis

text: Helisoma trivolvis


Hermissenda crassicornis

text: University of Florida

text: live

text: Generic

text: Two libraries were constructed from the CNS of 1 animal and eyes of 1 animal

text: Hermissenda crassicornis

text: Hermissenda crassicornis


Lymnaea stagnalis

text: University of Florida

text: live

text: Generic

text: Library was constructed from one CNS

text: Lymnaea stagnalis

text: Lymnaea stagnalis


Pleurobranchaea californica

text: University of Florida

text: live

text: Generic

text: Sample collected in collaboration with Dr. Rhanor Gillette/University of Illinois at Urbana-Champaign, IL Library was constructed from one CNS

text: Pleurobranchaea californica

text: Pleurobranchaea californica


Tritonia diomedia

text: University of Florida

text: live

text: Generic

text: Sample collected in collaboration with Dr. Paul Katz/ Georgia State University, Atlanta GA Library was constructed from one CNS

text: Tritonia tetraquetra

text: Tritonia diomedia


Dolabrifera dolabrifera

text: University of Florida

text: live

text: Generic

text: Sample collected in collaboration with Dr. William Wright/ Chapman University, Orange CA Library was constructed from one CNS

text: Dolabrifera dolabrifera

text: Dolabrifera dolabrifera


Loligo pealei

text: UF-LM

text: live

text: Generic

text: Library was constructed from the axoplasm of a single animal

text: Doryteuthis pealeii

text: Loligo pealei


Nautilus pompilius

text: University of Florida

text: live

text: Generic

text: Four libraries were constructed from the CNS, buccal ganglion, retina, and aorta of a single animal.

text: Nautilus pompilius

text: Nautilus pompilius


Octopus vulgaris

text: University of Florida

text: live

text: Generic

text: One library was constructed from a mix of retina,supraesophageal mass, subesophageal mass,optic lobes of a single animals

text: Octopus vulgaris

text: Octopus vulgaris


Antalis vulgaris

text: University of Florida

text: live

text: Generic

text: One whole animal

text: Antalis vulgaris

text: Antalis vulgaris (one whole animal)


Nucula nitidosa

text: University of Florida

text: live

text: Generic

text: One whole animal

text: Nucula

text: Nucula nitidosa


Polyschides dalli

text: University of Florida

text: live

text: Generic

text: Polyschides

text: Polyschides dalli antarcticus (one whole animal)


Scutopus ventrolineatus

text: University of Florida

text: live

text: Generic

text: Scutopus ventrolineatus

text: Scutopus ventrolineatus (two whole animals)


Melanoides tuberculatus

text: University of Florida

text: live

text: Generic

text: Melanoides tuberculata

text: Melanoides tuberculatus (one whole animal)


Solemya velum

text: University of Florida

text: live

text: Generic

text: Solemya velum

text: Solemya velum (mantle tissue)


Theodoxus fluvatilis

text: University of Florida

text: live

text: Generic

text: Theodoxus fluviatilis

text: Theodoxus fluvatilis (one whole animal)


Neomenia sp.

text: University of Florida

text: live

text: Generic

text: Solenogastres

text: Neomenia sp. (mantle tissue)


Wirenia argentea

text: University of Florida

text: live

text: Generic

text: Wirenia argentea

text: Wirenia argentea (several starved adults)


Hanleya sp.

text: University of Florida

text: live

text: Generic

text: Lepidopleuridae

text: Hanleya sp. (foot muscle tissue)


PAEST

text: Agricultural Biotechnology Research Center, Academia Sinica

text: live

text: Generic

text: mixed tissues from vegetative tissues (mixture of root, leaf and stem), reproductive tissues (young inflorescence as reproductive 1 library and flower parts as reproductive 2 library), and germinating seeds (seed 1, 2 and 3 lbraries represent germination stages of orchid seeds). RNA was isolated using modified Pinetree method.

text: Phalaenopsis aphrodite

text: De novo Assembly of Expressed Transcripts and Constructon of a Transcriptome Database of Phalaenopsis aphrodite


text: Biological Institute, University of Copenhagen

text: live

text: Generic

text: Lekberg et al. 454 Glomeromycota data from Plantago roots from disturbance (D) treatment

text: Glomeromycotina


text: live

text: Generic

text: Lekberg et al. 454 Glomeromycota data from Plantago roots from disturbance bucket (DB)treatment

text: Glomeromycotina


text: live

text: Generic

text: Lekberg et al. 454 Glomeromycota data from Plantago roots from control (C) treatment

text: Glomeromycotina


text: live

text: Generic

text: Lekberg et al. 454 Glomeromycota data from Plantago roots from surrounding plants (S)

text: Glomeromycotina


text: live

text: Generic

text: Lekberg et al. 454 Glomeromycota data from Plantago roots from disturbance bucket (DB) treatment

text: Glomeromycotina


text: live

text: Generic

text: Lekberg et al. 454 Glomeromycota data from Plantago roots from natural occuring plants (N)

text: Glomeromycotina


text: Neurogenetics, Genetics Medicine, SA Pathology

text: live

text: Generic

text: Lymphoblastoid cell line

characteristic: cell line

text: UPF3B mutation

characteristic: disease state

text: Patient 1

characteristic: individual

text: Homo sapiens

text: Lymphoblastoid cell line

text: Patient 1 [RNA-Seq]


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Lymphoblastoid cell line

text: UPF3B mutation

text: Patient 2

text: Homo sapiens

text: Lymphoblastoid cell line

text: Patient 2 [RNA-Seq]


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Lymphoblastoid cell line

text: UPF3B mutation

text: Patient 3

text: Homo sapiens

text: Lymphoblastoid cell line

text: Patient 3 [RNA-Seq]


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Lymphoblastoid cell line

text: UPF3B mutation

text: Patient 6

text: Homo sapiens

text: Lymphoblastoid cell line

text: Patient 6 [RNA-Seq]


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Lymphoblastoid cell line

text: Control

text: Control 1

text: Homo sapiens

text: Lymphoblastoid cell line

text: Control 1 [RNA-Seq]


text: live

text: Generic

characteristic: SRA accession

text: Lymphoblastoid cell line

text: Control

text: Control 2

text: Homo sapiens

text: Lymphoblastoid cell line

text: Control 2 [RNA-Seq]


text: Texas Biomedical Research Institute

text: live

text: Generic

text: cDNA prepared with Illumina mRNA-Seq Sample Prep Kit from control fetal left ventricular RNA isolate.

text: Ovis aries

characteristic: organism


text: Texas Biomedical Research Institute

text: live

text: Generic

text: cDNA prepared with Illumina mRNA-Seq Sample Prep Kit from obese fetal left ventricular RNA isolate.

text: Ovis aries


Loligo vulgaris

text: University of Florida

text: live

text: Generic

text: Library was constructed from the CNS of one animal

text: Loligo vulgaris

text: Loligo vulgaris


name: Aplysia californica DNA methylation study

text: University of Florida

text: live

text: Generic

text: Aplysia californica


text: Centre for Geogenetics, Natural History Museum of Denmark

text: live

text: Generic

text: Tc21a was obtained by extraction of undigested pellets from the first extraction of TC21c TC21 fresh powder

text: Equus caballus

text: TC21a, Thistle Creek, Yukon


text: live

text: Generic

text: The horse fossil bone analyzed (TC21) originates from Pleistocene permafrost deposits at Thistle Creek, Yukon. TC21c was generated from a fresh bone powder (1.8 g) following complete digestion in an EDTA-rich decalcifying buffer in addition to undigested pellets from an extraction of 3.6 g of the same bone.

text: Equus caballus

text: TC21c, Thistle Creek, Yukon


S2 naive S2R supernatant

text: Institut Pasteur

text: live

text: Generic

text: Drosophila melanogaster

text: Small RNA Library from Drosophila S2 cells infected with S2R supernatant


text: Research Institute of Physico-Chemical Medicine

text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 4 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s2 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 19 days old female. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s3 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 34 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s4 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 94 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s5 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 204 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s6 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 443 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s7 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 787 days old female. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s8 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 5105 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s10 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 9277 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s11 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 19457 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s12 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 24090 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s13 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 32120 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s14 ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 35770 days old male. Sample was obtained from the Tissue Bank for Developmental Disorders at the University of Maryland, USA. Informed consent for use of human tissues for research was obtained in writing form from relatives. Subject was defined as normal by forensic pathologists at the brain bank. Subject suffered sudden death with no prolonged agonal state. Sample contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 100nt, s15 ctx


Default

text: Cold Spring Harbor Laboratory

text: live

text: Generic

text: Schizosaccharomyces pombe

text: Default


text: Centre for Geogenetics, Natural History Museum of Denmark

text: live

text: Generic

text: Tc21b was obtained by extraction of undigested pellets from the first extraction of TC21c TC21 fresh powder

text: Equus caballus

text: TC21b, Thistle Creek, Yukon


text: Cold Spring Harbor Laboratory

text: live

text: Generic

text: Wt strain. genotype: h-, otr1R(SphI)::ura4, ura4-DS/E, ade6-216, his7-366, leu1-32. ChIP

text: Schizosaccharomyces pombe


text: Cold Spring Harbor Laboratory

text: live

text: Generic

text: cbh1 TAP-tagged strain. Genotype: h-, cbh1-CTAP::kanMX6 , ade6-M216 , his , leu1-32. ChIP.

text: Schizosaccharomyces pombe


text: Cold Spring Harbor Laboratory

text: live

text: Generic

text: Schizosaccharomyces pombe


Atta cephalotes fungus garden

text: UW-Madison

text: live

text: Generic

text: 16S library of fungus garden material collected from Atta cephalotes colonies near Gamboa, Panama.

text: Atta cephalotes

text: Atta cephalotes fungus garden


Atta colombica fungus garden top

text: UW-Madison

text: live

text: Generic

text: 16S library of fungus garden material collected from the top strata of Atta colombica fungus gardens near Gamboa, Panama.

text: Atta colombica

text: Atta colombica fungus garden top


Atta colombica fungus garden bottom

text: UW-Madison

text: live

text: Generic

text: 16S library constructed from the bottom strata of Atta colombica fungus gardens near Gamboa, Panama.

text: Atta colombica

text: Atta colombica fungus garden bottom


Dowling

text: University of Illinois

text: live

text: Generic

text: The Dowling cultivar of Soybean was chosen for resequencing due its demonstrated resistance to certain types of soybean aphids.

text: Glycine max

text: Dowling cultivar of soybean


name: Pleurobrachia bachei Illumina sequencing

text: University of Florida - Leonid Moroz

text: live

text: Generic

text: Pleurobrachia bachei


Dwight

text: University of Illinois

text: live

text: Generic

text: The Dwight cultivar was resequenced as it is an elite soybean line and is commonly used as the recurrent parent for trait introgressions.

text: Glycine max

text: Dwight


Komata

text: University of Illinois

text: live

text: Generic

text: Glycine max

text: Komata


text: University of Illinois

text: live

text: Generic

text: Glycine max


Williams 82

text: University of Illinois

text: live

text: Generic

text: Glycine max

text: Williams 82


text: University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: Circular 3C Sequence


text: University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: Circular 3C Sequence at 0 min


text: University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: Circular 3C Sequence at 10min


text: University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: Circular 3C Sequence at 60min


text: Research Institute of Physico-Chemical Medicine

text: live

text: Generic

text: Sample was prepared from the frontal part of the cerebellar cortex of postmortem brains of 5 humans (from 1 to 35 days, 3 males and 2 females) by pooling equal quantities of total RNA. Samples were obtained from the NICHD Brain and Tissue Bank for Developmental Disorders at the University of Maryland, USA, the Netherlands Brain Bank, Amsterdam, Netherlands and the Chinese Brain Bank Center, Wuhan, China. Informed consent for use of human tissues for research was obtained in writing from all donors or from their next of kin. All subjects were defined as normal by forensic pathologists at the corresponding brain bank. All subjects suffered sudden death with no prolonged agonal state. All samples contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 76nt, s8, ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the cerebellar cortex of postmortem brains of 5 humans (from 16 to 20 years, 4 males and 1 females) by pooling equal quantities of total RNA. Samples were obtained from the NICHD Brain and Tissue Bank for Developmental Disorders at the University of Maryland, USA, the Netherlands Brain Bank, Amsterdam, Netherlands and the Chinese Brain Bank Center, Wuhan, China. Informed consent for use of human tissues for research was obtained in writing from all donors or from their next of kin. All subjects were defined as normal by forensic pathologists at the corresponding brain bank. All subjects suffered sudden death with no prolonged agonal state. All samples contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 76nt, s11, ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the cerebellar cortex of postmortem brains of 5 humans (from 88 to 98 years, 4 males and 1 females) by pooling equal quantities of total RNA. Samples were obtained from the NICHD Brain and Tissue Bank for Developmental Disorders at the University of Maryland, USA, the Netherlands Brain Bank, Amsterdam, Netherlands and the Chinese Brain Bank Center, Wuhan, China. Informed consent for use of human tissues for research was obtained in writing from all donors or from their next of kin. All subjects were defined as normal by forensic pathologists at the corresponding brain bank. All subjects suffered sudden death with no prolonged agonal state. All samples contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 76nt, s14, ctx


Physalis peruviana

text: NIH

text: live

text: Generic

text: Colombian commercial cultivar

text: Physalis peruviana

text: Leaf transcriptome from a normalized cDNA library


text: University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: Pol 2 ChIP - Seq 01, 0 min after TNF alpha


text: University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: Pol 2 ChIP - Seq 02, 30 min after TNF alpha


text: Institute of Biomedicine, University of Eastern Finland

text: live

text: Generic

text: IgG

characteristic: antibody

text: Homo sapiens

text: THP-1 cells

text: IgG control

text: pooled

characteristic: treatment


text: live

text: Generic

text: VDR

text: Homo sapiens

text: THP-1 cells

text: VDR ChIP-seq unstimulated

characteristic: title

text: unstimulated


text: live

text: Generic

text: VDR

text: Homo sapiens

text: THP-1 cells

text: VDR ChIP-seq calcitriol


PRJNA63139.S. cryophilus_gd

text: Broad Institute

text: live

text: Generic

text: Schizosaccharomyces cryophilus OY26

text: S. cryophilus_gd

characteristic: sample name

text: NRRL Y-48691

characteristic: strain

text: Generic sample from Schizosaccharomyces cryophilus OY26

text: culture from type material of Schizosaccharomyces cryophilus

characteristic: type material


104607.RNA.S. cryophilus_LOG

text: Broad Institute

text: live

text: Generic

text: Schizosaccharomyces cryophilus OY26

text: S. cryophilus_LOG

characteristic: sample id

text: RNA

characteristic: sample type

text: NRRL Y-48691

text: Schizosaccharomyces cryophilus NRRL Y-48691 RNA sample S. cryophilus_LOG


104607.RNA.S. cryophilus_HS

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Schizosaccharomyces cryophilus OY26

text: S. cryophilus_HS

text: RNA

text: NRRL Y-48691

text: Schizosaccharomyces cryophilus NRRL Y-48691 RNA sample S. cryophilus_HS


text: UCL Cancer Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Eurogentec

characteristic: antibody manufacturer

text: embryonic stem cells

characteristic: cell type

text: 129 C57BL/6 mixed

characteristic: genetic background

text: TDG heterozygote

characteristic: genotype

characteristic: insert size standard deviation

characteristic: mean insert size

characteristic: medip antibody

text: Mus musculus

text: Mouse embryonic stem cells

text: ESC TDG heterozygote 1


text: UCL Cancer Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Eurogentec

text: embryonic stem cells

text: 129 C57BL/6 mixed

text: TDG heterozygote

text: Mus musculus

characteristic: organism

text: Mouse embryonic stem cells

text: ESC TDG heterozygote 2

characteristic: title


characteristic: External Id

text: UCL Cancer Institute

characteristic: INSDC center name

text: live

text: Generic

text: Eurogentec

text: embryonic stem cells

text: 129 C57BL/6 mixed

text: TDG heterozygote

text: Mus musculus

text: Mouse embryonic stem cells

text: ESC TDG heterozygote 3


text: UCL Cancer Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Eurogentec

text: embryonic stem cells

text: 129 C57BL/6 mixed

text: TDG knockout

text: Mus musculus

text: Mouse embryonic stem cells

text: ESC TDG knockout 1


text: UCL Cancer Institute

text: live

text: Generic

text: Eurogentec

characteristic: antibody manufacturer

text: embryonic stem cells

characteristic: cell type

text: 129 C57BL/6 mixed

text: TDG knockout

text: Mus musculus

text: Mouse embryonic stem cells

text: ESC TDG knockout 2


text: UCL Cancer Institute

text: live

text: Generic

text: Eurogentec

text: embryonic stem cells

text: 129 C57BL/6 mixed

characteristic: genetic background

text: TDG knockout

characteristic: genotype

text: Mus musculus

text: Mouse embryonic stem cells

text: ESC TDG knockout 3


text: UCL Cancer Institute

text: live

text: Generic

text: Eurogentec

text: neural precursor cells

text: 129 C57BL/6 mixed

text: TDG heterozygote

characteristic: insert size standard deviation

characteristic: mean insert size

text: Mus musculus

text: Mouse neural precursor cells

text: NPC TDG heterozygote 1


text: UCL Cancer Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Eurogentec

text: neural precursor cells

text: 129 C57BL/6 mixed

text: TDG heterozygote

characteristic: medip antibody

text: Mus musculus

text: Mouse neural precursor cells

text: NPC TDG heterozygote 2


text: UCL Cancer Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Eurogentec

text: neural precursor cells

text: 129 C57BL/6 mixed

text: TDG heterozygote

text: Mus musculus

text: Mouse neural precursor cells

text: NPC TDG heterozygote 3


text: UCL Cancer Institute

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Eurogentec

text: neural precursor cells

text: 129 C57BL/6 mixed

text: TDG knockout

text: Mus musculus

text: Mouse neural precursor cells

text: NPC TDG knockout 1


text: UCL Cancer Institute

text: live

text: Generic

text: Eurogentec

text: neural precursor cells

text: 129 C57BL/6 mixed

text: TDG knockout

text: Mus musculus

characteristic: organism

text: Mouse neural precursor cells

text: NPC TDG knockout 2

characteristic: title


characteristic: External Id

text: UCL Cancer Institute

characteristic: INSDC center name

text: live

text: Generic

text: Eurogentec

text: neural precursor cells

text: 129 C57BL/6 mixed

text: TDG knockout

text: Mus musculus

text: Mouse neural precursor cells

text: NPC TDG knockout 3


text: UCL Cancer Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Eurogentec

text: embryonic fibroblast cells

text: 129 C57BL/6 mixed

text: TDG homozygote wt

text: Mus musculus

text: Mouse embryonic fibroblast cells

text: MEF TDG homozygote wt 1


text: UCL Cancer Institute

text: live

text: Generic

text: Eurogentec

characteristic: antibody manufacturer

text: embryonic fibroblast cells

characteristic: cell type

text: 129 C57BL/6 mixed

text: TDG homozygote wt

text: Mus musculus

text: Mouse embryonic fibroblast cells

text: MEF TDG homozygote wt 2


text: UCL Cancer Institute

text: live

text: Generic

text: Eurogentec

text: embryonic fibroblast cells

text: 129 C57BL/6 mixed

characteristic: genetic background

text: TDG homozygote wt

characteristic: genotype

text: Mus musculus

text: Mouse embryonic fibroblast cells

text: MEF TDG homozygote wt 3


text: UCL Cancer Institute

text: live

text: Generic

text: Eurogentec

text: embryonic fibroblast cells

text: 129 C57BL/6 mixed

text: TDG knockout

characteristic: insert size standard deviation

characteristic: mean insert size

text: Mus musculus

text: Mouse embryonic fibroblast cells

text: MEF TDG knockout 1


text: UCL Cancer Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Eurogentec

text: embryonic fibroblast cells

text: 129 C57BL/6 mixed

text: TDG knockout

characteristic: medip antibody

text: Mus musculus

text: Mouse embryonic fibroblast cells

text: MEF TDG knockout 2


text: UCL Cancer Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Eurogentec

text: embryonic fibroblast cells

text: 129 C57BL/6 mixed

text: TDG knockout

text: Mus musculus

text: Mouse embryonic fibroblast cells

text: MEF TDG knockout 3


text: Comparative Biology, PICB

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: adult

characteristic: developmental stage

text: male

characteristic: gender

text: Macaca mulatta

text: macaque testis

text: testis

characteristic: tissue

text: Small RNA from macaque testis


characteristic: External Id

text: Comparative Biology, PICB

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: adult

text: male

text: Macaca mulatta

characteristic: organism

text: macaque epididymis

text: epididymis

text: Small RNA from macaque epididymis

characteristic: title


text: Comparative Biology, PICB

characteristic: INSDC last update

text: live

text: Generic

text: adult

text: male

text: Macaca mulatta

text: macaque prostate

text: prostate

text: Small RNA from macaque prostate


text: Comparative Biology, PICB

text: live

text: Generic

text: adult

text: male

text: Macaca mulatta

text: macaque seminal vesicle

text: seminal vesicle

text: Small RNA from macaque seminal vesicle


text: Comparative Biology, PICB

text: live

text: Generic

text: adult

text: male

text: Macaca mulatta

text: macaque cortex

text: cortex

text: Small RNA from macaque cortex


text: Comparative Biology, PICB

text: live

text: Generic

text: adult

text: male

text: Macaca mulatta

text: macaque principal and basal cells of epididymis

text: principal and basal cells of epididymis

text: Small RNA from 4 pooled macaque principal and basal cells


text: Comparative Biology, PICB

text: live

text: Generic

text: adult

text: male

text: Macaca mulatta

text: macaque peritubular tissues of epididymis

text: peritubular tissues of epididymis

text: Small RNA from 4 pooled macaque peritubular tissues


text: Comparative Biology, PICB

text: live

text: Generic

text: adult

text: male

text: wildtype

characteristic: genotype

text: Mus musculus

text: mouse epididymis

characteristic: strain

text: epididymis

text: Small RNA from mouse epididymis


text: University of California - Davis, Drosophila Population Genomics Project

characteristic: INSDC secondary accession

text: live

text: Generic

text: Drosophila melanogaster


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.3-04192010

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Eubacterium saburreum DSM3986

characteristic: description

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft31.1x;150

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: oral cavity

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Lachnoanaerobaculum saburreum DSM 3986

text: Eubacterium saburreum DSM 3986

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: DSM 3986, ATCC 33271

text: Homo sapiens

characteristic: specific host

text: DSM 3986

text: MIGS Cultured Bacterial/Archaeal sample from Eubacterium saburreum DSM 3986


name: Adult Schistosoma mansoni male_S_M_N0_3_X_001

characteristic: External Id

text: Universidade de Sao Paulo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: S_M_N0_3_X_001 Schistosoma mansoni_adult male_no treatment_library generated by method directional 3_strand to be determined_first library of this organism and life stage

text: Schistosoma mansoni

characteristic: organism

text: Adult Schistosoma mansoni male directional 3' 454 RNA-Seq

characteristic: title


text: Research Institute of Physico-Chemical Medicine

text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 5 humans (from 182 to 274 days, 3 males and 2 females) by pooling equal quantities of total RNA. Samples were obtained from the NICHD Brain and Tissue Bank for Developmental Disorders at the University of Maryland, USA, the Netherlands Brain Bank, Amsterdam, Netherlands and the Chinese Brain Bank Center, Wuhan, China. Informed consent for use of human tissues for research was obtained in writing from all donors or from their next of kin. All subjects were defined as normal by forensic pathologists at the corresponding brain bank. All subjects suffered sudden death with no prolonged agonal state. All samples contained an approximately 2:1 gray matter to white matter volume ratio.

characteristic: description

text: Homo sapiens

text: hs, 76nt, s15, ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the cerebellar cortex of postmortem brains of 5 humans (from 182 to 274 days, 3 males and 2 females) by pooling equal quantities of total RNA. Samples were obtained from the NICHD Brain and Tissue Bank for Developmental Disorders at the University of Maryland, USA, the Netherlands Brain Bank, Amsterdam, Netherlands and the Chinese Brain Bank Center, Wuhan, China. Informed consent for use of human tissues for research was obtained in writing from all donors or from their next of kin. All subjects were defined as normal by forensic pathologists at the corresponding brain bank. All subjects suffered sudden death with no prolonged agonal state. All samples contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 76nt, s16, ctx


text: Houston Methodist Research Institute - Department of Infectious Disease

text: live

text: Generic

text: Streptococcus pyogenes

text: GAS M3 pharyngitis isolate


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 5 humans (from 25 to 28 years, 4 males and 1 females) by pooling equal quantities of total RNA. Samples were obtained from the NICHD Brain and Tissue Bank for Developmental Disorders at the University of Maryland, USA, the Netherlands Brain Bank, Amsterdam, Netherlands and the Chinese Brain Bank Center, Wuhan, China. Informed consent for use of human tissues for research was obtained in writing from all donors or from their next of kin. All subjects were defined as normal by forensic pathologists at the corresponding brain bank. All subjects suffered sudden death with no prolonged agonal state. All samples contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 76nt, s17, ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the cerebellar cortex of postmortem brains of 5 humans (from 25 to 28 years, 4 males and 1 females) by pooling equal quantities of total RNA. Samples were obtained from the NICHD Brain and Tissue Bank for Developmental Disorders at the University of Maryland, USA, the Netherlands Brain Bank, Amsterdam, Netherlands and the Chinese Brain Bank Center, Wuhan, China. Informed consent for use of human tissues for research was obtained in writing from all donors or from their next of kin. All subjects were defined as normal by forensic pathologists at the corresponding brain bank. All subjects suffered sudden death with no prolonged agonal state. All samples contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 76nt, s18, ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the superior frontal gyrus of postmortem brains of 5 humans (from 70 to 80 years, 2 males and 3 females) by pooling equal quantities of total RNA. Samples were obtained from the NICHD Brain and Tissue Bank for Developmental Disorders at the University of Maryland, USA, the Netherlands Brain Bank, Amsterdam, Netherlands and the Chinese Brain Bank Center, Wuhan, China. Informed consent for use of human tissues for research was obtained in writing from all donors or from their next of kin. All subjects were defined as normal by forensic pathologists at the corresponding brain bank. All subjects suffered sudden death with no prolonged agonal state. All samples contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 76nt, s19, ctx


text: live

text: Generic

text: Sample was prepared from the frontal part of the cerebellar cortex of postmortem brains of 5 humans (from 70 to 80 years, 2 males and 3 females) by pooling equal quantities of total RNA. Samples were obtained from the NICHD Brain and Tissue Bank for Developmental Disorders at the University of Maryland, USA, the Netherlands Brain Bank, Amsterdam, Netherlands and the Chinese Brain Bank Center, Wuhan, China. Informed consent for use of human tissues for research was obtained in writing from all donors or from their next of kin. All subjects were defined as normal by forensic pathologists at the corresponding brain bank. All subjects suffered sudden death with no prolonged agonal state. All samples contained an approximately 2:1 gray matter to white matter volume ratio.

text: Homo sapiens

text: hs, 76nt, s20, ctx


text: University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: SMAD1/5 ChIP-seq in BMP-6 treated HUVECs


text: University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: Input genomic data of HUVECs


text: University of Tokyo

text: live

text: Generic

text: Homo sapiens

text: SMAD1/5 ChIP-seq in BMP-9 treated HUVECs


miRNA profile of the human HeLa cells

text: The Australian National University

text: live

text: Generic

text: Total RNA was prepared from HeLa cultures using Trizol reagent. Small RNA &lt;70nt was enriched from 50-100µg total RNA by flashPAG electrophoresis. Of the 30µl eluted, 3µl was used in the SOLiD Small RNA Expression Kit (SREK) to create the sequencing library. Briefly, after adapter ligation and reverse transcription test PCR amplifications were done to identify the minimal cycle number to visualise the libraries by agarose gel electrophoresis. Large scale library preparations (3x 100µl PCR) were enriched using MinElute columns (Qiagen) and PCR products between 110-150 nucleotide (nt) were excised from 8% Tris-Borate-EDTA polyacrylamide gels stained with SYBR Gold and eluted in 600ul of elution buffer (5mM Tris/HCl pH8, 0.5mM EDTA, 2.5M Ammonium Acetate) overnight. Gel slurry were passed through Spin-X filters (Sigma) and precipitated in two 300µl aliquots by addition of 800µl ethanol and 3µl of glycogen (5mg/ml). Pellets were washed in 75% ethanol and air-dried before being resuspended in 30µl water. Library concentrations were determined by quantitative PCR (qPCR, described in SREK manual) as well as densitometry of polyacrylamide gels (as above) loaded with serial dilutions of the HyperLadder V (Bioline). 2.8 fmol of each library were added to emulsion PCRs, and the libraries were sequenced Total RNA was prepared from HeLa cultures using Trizol reagent. Small RNA &lt;70nt was enriched from 50-100µg total RNA by flashPAG electrophoresis. Of the 30µl eluted, 3µl was used in the SOLiD Small RNA Expression Kit (SREK) to create the sequencing library. Briefly, after adapter ligation and reverse transcription test PCR amplifications were done to identify the minimal cycle number to visualise the libraries by agarose gel electrophoresis. Large scale library preparations (3x 100µl PCR) were enriched using MinElute columns (Qiagen) and PCR products between 110-150 nucleotide (nt) were excised from 8% Tris-Borate-EDTA polyacrylamide gels stained with SYBR Gold and eluted in 600ul of elution buffer (5mM Tris/HCl pH8, 0.5mM EDTA, 2.5M Ammonium Acetate) overnight. Gel slurry were passed through Spin-X filters (Sigma) and precipitated in two 300µl aliquots by addition of 800µl ethanol and 3µl of glycogen (5mg/ml). Pellets were washed in 75% ethanol and air-dried before being resuspended in 30µl water. Library concentrations were determined by quantitative PCR (qPCR, described in SREK manual) as well as densitometry of polyacrylamide gels (as above) loaded with serial dilutions of the HyperLadder V (Bioline). 2.8 fmol of each library were added to emulsion PCRs, and the libraries were sequenced on a SOLiD system (version 3) using SOLiD version 2 reagents. Unless stated otherwise, equipment and reagents used were from Life Technologies and used following the manufacturer’s instructions. on a SOLiD system (version 3) using SOLiD version 2 reagents. Unless stated otherwise, equipment and reagents used were from Life Technologies and used following the manufacturer’s instructions.

text: Homo sapiens

text: mRNA isoform diversity can obscure detection of miRNA-mediated control of translation.


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.3-04192010

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Lactobacillus iners strain ATCC 55195

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft78.6x;19

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: urogenital tract, vaginal

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Lactobacillus iners ATCC 55195

text: Lactobacillus iners ATCC 55195

text: Reference Genome

text: not determined

text: ATCC 55195

text: Homo sapiens

text: ATCC 55195

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus iners ATCC 55195


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.3-10192009

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Mobiluncus mulieris strain ATCC 35239

characteristic: description

text: Homo sapiens-associated habitat [ENVO:00009003]

text: Level 2: High-Quality Draft28.6x;66

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Mobiluncus mulieris ATCC 35239

characteristic: organism

text: Mobiluncus mulieris ATCC 35239

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, 454-Paired-end

characteristic: sequencing method

characteristic: sop

text: ATCC 35239

text: Homo sapiens

characteristic: specific host

text: ATCC 35239

text: MIGS Cultured Bacterial/Archaeal sample from Mobiluncus mulieris ATCC 35239

characteristic: title


yeast

text: Institute for Research in Biomedicine Barcelona

text: live

text: Generic

text: &lt;ozgen&gt;

text: Saccharomyces cerevisiae

text: Yeast


text: live

text: Generic

text: pharyngitis isolate

text: Streptococcus pyogenes


text: The Methodist Hospital Research Institute - Department of Infectious Disease

text: live

text: Generic

text: pharyngitis isolate

text: Streptococcus pyogenes


Pleurobrachia bachei

text: University of Florida

text: live

text: Generic

text: Pleurobrachia bachei

text: Pleurobrachia bachei


Beroe abyssicola

text: University of Florida

text: live

text: Generic

text: Beroe abyssicola

text: Beroe abyssicola


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.0.0-Eclipse

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Prevotella sp. oral taxon 472 F0295

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft17.2x;190

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Prevotella sp. F0295

text: Reference Genome

text: not determined

text: 454, Sanger

text: BEI HM-16

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Prevotella sp. oral taxon 472 str. F0295


H3K9ac and H3K4me3 nucleosome

characteristic: External Id

text: Pennsylvania State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Saccharomyces cerevisiae

characteristic: organism

text: Nucleosome and histone modification during yeast meiosis


text: PGFE, UMass Medical School

text: live

text: Generic

text: agarose gel

characteristic: media

text: synthetic construct

text: B1H selection

characteristic: title


text: PGFE, UMass Medical School

text: live

text: Generic

text: synthetic construct

text: B1H randomized library


text: PGFE, UMass Medical School

text: live

text: Generic

text: liquid media

text: synthetic construct

text: B1H randomized library