text: live

text: Generic

text: Escherichia coli DEC1A

text: Escherichia coli DEC1A


Vagad leaf (drought tolerant )

status: PUBLIC

characteristic: External Id

text: National Botanical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Gossypium herbaceum

characteristic: organism

text: Gene networks controlling drought traits in Gossypium herbaceum L.

characteristic: title


B-Guj-cot 21 root (drought tolerant)

text: National Botanical Research Institute

text: live

text: Generic

text: Gossypium herbaceum


RAHS-IPS-87- leaf(drought sensitive)

text: National Botanical Research Institute

text: live

text: Generic

text: Gossypium herbaceum


RAHS-IPS-87-root (Drought sensitive)

text: National Botanical Research Institute

text: live

text: Generic

text: Gossypium herbaceum


RAHS-14-Leaf** (drought sensitive)

text: National Botanical Research Institute

text: live

text: Generic

text: Gossypium herbaceum


text: University of Toronto

text: live

text: Generic

text: HeLa

tag: attribute

characteristic: cell line

text: control

characteristic: genotype/variation

text: Homo sapiens

text: HeLa (cervical adenocarcinoma)


text: University of Toronto

text: live

text: Generic

text: HeLa

text: SmB/B' knockdown

text: Homo sapiens

text: HeLa (cervical adenocarcinoma)


text: University of Toronto

text: live

text: Generic

text: HeLa

text: SRSF1 knockdown

text: Homo sapiens

text: HeLa (cervical adenocarcinoma)


tatroviride

text: CINVESTAV

text: live

text: Generic

text: Trichoderma atroviride

text: Identification of mycoparasitism-related genes in Trichoderma atroviride: A holistic comparative study on self confrontation and host interaction by de novo transcriptome sequencing


text: Massachusetts Institute of Technology

text: live

text: Generic

characteristic: antibody catalog number

text: Abcam

characteristic: antibody manufacturer

text: NHEK

characteristic: chip antibody

text: Homo sapiens

text: cultured NHEK cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: NHEK

text: Homo sapiens

text: cultured NHEK cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: CTCF

text: Homo sapiens

text: cultured GM12878 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Abcam

text: Homo sapiens

text: cultured GM12878 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: Homo sapiens

text: cultured GM12878 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Homo sapiens

text: cultured GM12878 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: CTCF

text: Homo sapiens

text: cultured H1 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Abcam

text: Homo sapiens

text: cultured H1 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: Homo sapiens

text: cultured H1 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Homo sapiens

text: cultured H1 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: CTCF

text: Homo sapiens

text: cultured HepG2 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Abcam

text: Homo sapiens

text: cultured HepG2 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: Homo sapiens

text: cultured HepG2 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Homo sapiens

text: cultured HepG2 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: HMEC

text: CTCF

text: Homo sapiens

text: cultured HMEC cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Abcam

text: HMEC

text: Homo sapiens

text: cultured HMEC cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: HMEC

text: Homo sapiens

text: cultured HMEC cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: HMEC

text: Homo sapiens

text: cultured HMEC cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: HSMM

text: CTCF

text: Homo sapiens

text: cultured HSMM cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Abcam

text: HSMM

text: Homo sapiens

text: cultured HSMM cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: HSMM

text: Homo sapiens

text: cultured HSMM cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: HSMM

text: Homo sapiens

text: cultured HSMM cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: HUVEC

text: CTCF

text: Homo sapiens

text: cultured HUVEC cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Abcam

text: HUVEC

text: Homo sapiens

text: cultured HUVEC cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: HUVEC

text: Homo sapiens

text: cultured HUVEC cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: HUVEC

text: Homo sapiens

text: cultured HUVEC cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: CTCF

text: Homo sapiens

text: cultured K562 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Abcam

text: Homo sapiens

text: cultured K562 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: Homo sapiens

text: cultured K562 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Homo sapiens

text: cultured K562 cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: NHEK

text: CTCF

text: Homo sapiens

text: cultured NHEK cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Abcam

text: NHEK

text: Homo sapiens

text: cultured NHEK cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: NHEK

text: Homo sapiens

text: cultured NHEK cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: NHEK

text: Homo sapiens

text: cultured NHEK cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: NHLF

text: CTCF

text: Homo sapiens

text: cultured NHLF cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Abcam

text: NHLF

text: Homo sapiens

text: cultured NHLF cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: Millipore

text: NHLF

text: Homo sapiens

text: cultured NHLF cells


text: Massachusetts Institute of Technology

text: live

text: Generic

text: NHLF

text: Homo sapiens

text: WCE

characteristic: sample type

text: cultured NHLF cells


name: 1128046004185 Toxoplasma gondii p89 strain TOXOP89-P3KB-01-593 Sample

characteristic: External Id

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Toxoplasma gondii p89 strain

characteristic: description

text: Toxoplasma gondii p89

text: Generic sample from Toxoplasma gondii p89


name: 1127979758816 Toxoplasma gondii MAS strain TOXOMAS-P3KB-01-630 Sample

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Total DNA isolated from Toxoplasma gondii MAS strain

text: Toxoplasma gondii MAS

text: Generic sample from Toxoplasma gondii MAS


masked reads

text: LANGEBIO-CINVESTAV

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Reads were masked using the SeqClean software pipeline to eliminate sequence regions that would cause incorrect assembly. Targets for masking include poly A/T tails, ends rich in Ns (undetermined bases) and low complexity sequences. cDNA sequences were obtained from StsL (cDNA pool obtained from U. gibba plants exposed to multiple physiological stress condition; stress Library), ShtL (shoots library, stem/leaves), FlwL (Inflorescences library) and TrpL (utricles or traps Library).

text: Utricularia

text: Transcriptomics and molecular evolutionary rate analysis of the Bladderwort (Utricularia), a Carnivorous Plant with a Minimal Genome


text: DOE-GLBRC 2008

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Glimmer

characteristic: Gene Calling Method

text: Gram+

characteristic: Gram Staining

text: Joint Genome Institute, U.S. Department of Energy

text: live

characteristic: INSDC status

text: isolated by Waksman and Lechevalier

characteristic: Isolation Comments

text: Generic

characteristic: NCBI submission model

text: Sporulating

characteristic: Sporulation

text: No

characteristic: Type Strain

text: Free living

characteristic: biotic relationship

text: Filament-shaped

characteristic: cell shape

text: Waksman and Lechevalier

characteristic: collected by

characteristic: culture-collection

text: Keywords: GSC:MIGS:2.1

text: Soil

characteristic: environment

characteristic: investigation type

text: Soil

characteristic: isolation-source

text: soil

text: Nonmotile

characteristic: motility

text: Streptomyces pratensis ATCC 33331

text: Streptomyces flavogriseus IAF 45 CD, ATCC 33331

characteristic: project name

text: ATCC 33331, DSM 40990

text: Aerobe

text: ATCC 33331

characteristic: strain

text: Mesophile

characteristic: temperature range

text: Streptomyces flavogriseus ATCC 33331, complete genome.


characteristic: External Id

text: NIAAA/NIH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Macaca mulatta

characteristic: organism

text: Peer-reared K42

characteristic: title


text: DOE-GEBA 2007

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Gram-

characteristic: Gram Staining

characteristic: Greengenes ID

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Japan

characteristic: country

text: Keywords: GSC:MIGS:2.1

characteristic: description

text: Soil near hot-spring in Izu Peninsula, Japan

characteristic: isolation site

text: soil near hot spring

text: 34.856 N 138.938 E

characteristic: lat lon

text: Hydrogenobacter thermophilus TK-6

text: Hydrogenobacter thermophilus TK-6, DSM 6534

text: DSM 06534, IAM 12695

characteristic: temperature optimum

text: Thermophile

text: Hydrogenobacter thermophilus TK-6, complete genome.

text: type strain of Hydrogenobacter thermophilus

characteristic: type material


characteristic: External Id

text: DOE-GEBA 2007

text: Gram-

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Yes

text: free living

text: Rod-shaped

characteristic: cell shape

text: South Korea

text: Keywords: GSC:MIGS:2.1

characteristic: investigation type

text: Cotton-waste composts used as mushroom cultivation in South Korea

text: cotton waste composts used for mushroom cultivation

characteristic: isolation-source

text: Nonmotile

characteristic: motility

text: Leadbetterella byssophila DSM 17132

text: Leadbetterella byssophila 4M15, DSM 17132

characteristic: project name

text: DSM 17132, KACC 11308

text: aerobe

text: DSM 17132

characteristic: strain

text: Mesophile

characteristic: temperature range

text: Leadbetterella byssophila DSM 17132, complete genome.

text: type strain of Leadbetterella byssophila


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Paenibacillus sp. Y412MC10

characteristic: description

text: Paenibacillus sp. Y412MC10

characteristic: organism

text: Generic sample from Paenibacillus sp. Y412MC10

characteristic: title


characteristic: External Id

text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Escherichia coli DEC1B

text: Escherichia coli DEC1B


Iberian pig (Guadyerbas )

text: UAB

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: The sequenced pig was a sow from the Iberian strain Guadyerbas. This is an obese, black, hairless and early-maturing Iberian strain. It represents one of the most ancient surviving Iberian lines, with no evidence of introgression of Asian genes that has remained isolated since 1945 in a closed herd, El Dehes*n del Encinar, located in Toledo, central Spain (Toro et al, 2000). A relevant aspect is that the complete pedigree since the founding of the herd is known, including that of the individual sequenced. Furthermore it has been used in several QTL experiments, including F2 crosses with Landrace (P*rez-Enciso et al, 2000) and Meishan (Noguera et al, 2009)

text: Sus scrofa domesticus

text: Iberian pig , Guadyerbas strain


name: 1128046004253 Toxoplasma gondii FOU strain FOU-PE-ILI12-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

characteristic: SRA accession

text: Total DNA isolated from Toxoplasma gondii FOU strain

text: Toxoplasma gondii FOU

text: Generic sample from Toxoplasma gondii FOU


name: 1128046004251 Toxoplasma gondii VAND strain VAND-PE-ILI9-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Toxoplasma gondii VAND strain

text: Toxoplasma gondii VAND

text: Generic sample from Toxoplasma gondii VAND


name: 1128046004249 Toxoplasma gondii p89 strain P89-IC-ILI10-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Toxoplasma gondii p89 strain

text: Toxoplasma gondii p89

text: Generic sample from Toxoplasma gondii p89


name: 1128046004244 Toxoplasma gondii MAS strain MAS-PE-ILI11-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Toxoplasma gondii MAS strain

text: Toxoplasma gondii MAS

text: Generic sample from Toxoplasma gondii MAS


El Coquito A4 Coq_2m16sb5b15

text: Corporacion Corpogen

text: live

text: Generic

text: Superficial running stream water was collected in sterile plastic containers in April 2008 at El Coquito hot spring (04*52'27''N; 75*15'51,4''W) by filling the containers to the brim and capping. Samples were transported at 4oC to the laboratory for further analysis (physicochemical analysis, total microbial counts and DNA isolation).

text: freshwater metagenome

text: Amplicons pyrosequencing of the V5-V6 hypervariable region of 16S rRNA gene


FF

text: The Salk Institute for Biological Studies

text: live

text: Generic

text: Foreskin fibroblasts, line described in Yu, J. et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324, 797-801 (2009).

text: Homo sapiens

text: Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells


Barnacle larval transcriptome sample

text: The Hong Kong University of Science and Tehcnology

text: live

text: Generic

text: pool of 3 different larval stages (stage 2 nauplius, stage 6 nauplius, and cryprids)

text: stage 2 nauplius

characteristic: dev stage

text: cryprids

text: stage 6 nauplius

text: Amphibalanus amphitrite

text: Balanus amphitrite larvae


Barnacle adult transcriptome sample

text: live

text: Generic

text: Balanus amphitrite adult

text: adult

text: Amphibalanus amphitrite

text: Balanus amphitrite adult


text: Cornell University

text: live

text: Generic

text: n

characteristic: collection date

text: USA

characteristic: country

text: Reactor U3 YearMonth 200710

characteristic: elevation

text: biome

characteristic: env biome

text: wastewater treatment plant

characteristic: env feature

text: anaerobic digester sludge

characteristic: env matter

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y

characteristic: public

characteristic: sample name

characteristic: temp

text: Anaerobic bioreactor bacterial 16S rRNA V2 amplicons


characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: n

text: USA

text: Reactor E3 YearMonth 200710

characteristic: description

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

text: bioreactor sludge metagenome

characteristic: organism

text: WernerEtAlBreweryAnaerobicBioreactors

characteristic: project name

text: y

characteristic: title


text: Cornell University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: n

characteristic: collection date

text: USA

characteristic: country

text: Reactor E1 YearMonth 200710

characteristic: elevation

text: biome

characteristic: env biome

text: wastewater treatment plant

characteristic: env feature

text: anaerobic digester sludge

characteristic: env matter

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y


characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: n

text: USA

text: Reactor E4 YearMonth 200710

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y

characteristic: public

characteristic: sample name

characteristic: temp


text: Cornell University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: n

text: USA

text: Reactor E2 YearMonth 200710

characteristic: description

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

text: bioreactor sludge metagenome

characteristic: organism

text: WernerEtAlBreweryAnaerobicBioreactors

characteristic: project name

text: y

characteristic: title


characteristic: External Id

text: Cornell University

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: n

characteristic: collection date

text: USA

characteristic: country

text: Reactor U2 YearMonth 200710

characteristic: elevation

text: biome

characteristic: env biome

text: wastewater treatment plant

characteristic: env feature

text: anaerobic digester sludge

characteristic: env matter

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y


text: Cornell University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: n

text: USA

text: Reactor I1 YearMonth 200710

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y

characteristic: public

characteristic: sample name

characteristic: temp


characteristic: External Id

text: Cornell University

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: n

text: USA

text: Reactor U4 YearMonth 200710

characteristic: description

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

text: bioreactor sludge metagenome

characteristic: organism

text: WernerEtAlBreweryAnaerobicBioreactors

characteristic: project name

text: y

characteristic: title


text: Cornell University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: n

characteristic: collection date

text: USA

characteristic: country

text: Reactor U3 YearMonth 200711

characteristic: elevation

text: biome

characteristic: env biome

text: wastewater treatment plant

characteristic: env feature

text: anaerobic digester sludge

characteristic: env matter

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y


characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: n

text: USA

text: Reactor E3 YearMonth 200711

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y

characteristic: public

characteristic: sample name

characteristic: temp


text: Cornell University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: n

text: USA

text: Reactor E1 YearMonth 200711

characteristic: description

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

text: bioreactor sludge metagenome

characteristic: organism

text: WernerEtAlBreweryAnaerobicBioreactors

characteristic: project name

text: y

characteristic: title


characteristic: External Id

text: Cornell University

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: n

characteristic: collection date

text: USA

characteristic: country

text: Reactor E4 YearMonth 200711

characteristic: elevation

text: biome

characteristic: env biome

text: wastewater treatment plant

characteristic: env feature

text: anaerobic digester sludge

characteristic: env matter

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y


text: Cornell University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: n

text: USA

text: Reactor E2 YearMonth 200711

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y

characteristic: public

characteristic: sample name

characteristic: temp


characteristic: External Id

text: Cornell University

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: n

text: USA

text: Reactor I1 YearMonth 200711

characteristic: description

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

text: bioreactor sludge metagenome

characteristic: organism

text: WernerEtAlBreweryAnaerobicBioreactors

characteristic: project name

text: y

characteristic: title


text: Cornell University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: n

characteristic: collection date

text: USA

characteristic: country

text: Reactor U4 YearMonth 200711

characteristic: elevation

text: biome

characteristic: env biome

text: wastewater treatment plant

characteristic: env feature

text: anaerobic digester sludge

characteristic: env matter

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y


characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: n

text: USA

text: Reactor U1 YearMonth 200711

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y

characteristic: public

characteristic: sample name

characteristic: temp


text: Cornell University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: n

text: USA

text: Reactor U3 YearMonth 200712

characteristic: description

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

text: bioreactor sludge metagenome

characteristic: organism

text: WernerEtAlBreweryAnaerobicBioreactors

characteristic: project name

text: y

characteristic: title


characteristic: External Id

text: Cornell University

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: n

characteristic: collection date

text: USA

characteristic: country

text: Reactor E3 YearMonth 200712

characteristic: elevation

text: biome

characteristic: env biome

text: wastewater treatment plant

characteristic: env feature

text: anaerobic digester sludge

characteristic: env matter

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y


text: Cornell University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: n

text: USA

text: Reactor E1 YearMonth 200712

text: biome

text: wastewater treatment plant

text: anaerobic digester sludge

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: bioreactor sludge metagenome

text: WernerEtAlBreweryAnaerobicBioreactors

text: y

characteristic: public

characteristic: sample name

characteristic: temp


characteristic: External Id

text: Cornell University

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: n

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text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 1 - cytosol polysome associated polysome fractionation - run2


text: live

text: Generic

text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 2 - cytosol polysome associated polysome fractionation - run1


text: live

text: Generic

text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 2 - cytosol polysome associated polysome fractionation - run2


text: live

text: Generic

text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 1 - mRNA run1


text: live

text: Generic

text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 1 - mRNA run2


text: live

text: Generic

text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 2 - mRNA run 1


text: live

text: Generic

text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 2 - mRNA run 2


text: live

text: Generic

text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 2 - mRNA run 3


text: live

text: Generic

text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 2 - mRNA run 4


text: live

text: Generic

text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 2 - mRNA run 5


text: live

text: Generic

text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 2 - mRNA run 6


text: live

text: Generic

text: Homo sapiens

text: human ES cells

text: Human ES cells replicate 2 - mRNA run 7


text: Department of Molecular Biology (274), Radboud University

text: live

text: Generic

text: 10,000 single-cell Globobulimina pseudospinescens organisms

text: Globobulimina pseudospinescens

text: Whole living organisms


text: Keeney lab, Molecular Biology Program, Memorial Sloan-Kettering Cancer Center

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Synchronized meiotic culture


text: Keeney lab, Molecular Biology Program, Memorial Sloan Kettering Cancer Center

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Synchronized meiotic culture


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Spo11-associated oligos

text: dataset 1A


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Spo11-associated oligos

text: dataset 1B


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Spo11-associated oligos

text: dataset 1C


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Spo11-associated oligos

text: dataset 2


Refinery_WWTP sequencing

text: UNICAMP

text: live

text: Generic

text: uncultured bacterium

text: Phylogenetic and metabolic diversity of a metagenomic library from a petroleum refinery wastewater treatment plant using 454-pyrosequencing technology


text: KAIST

text: live

text: Generic

characteristic: antibody

text: Abcam

characteristic: antibody manufacturer

text: NCCIT

text: embryonic carcinoma cell line

text: Homo sapiens

text: NCCIT


text: KAIST

characteristic: INSDC first public

text: live

text: Generic

text: RNAPII

text: Abcam

text: NCCIT

text: embryonic carcinoma cell line

text: Homo sapiens

text: NCCIT


FF-iPSC 19.11 BMP4

text: The Salk Institute for Biological Studies

characteristic: INSDC last update

text: live

text: Generic

text: Human induced pluripotent stem cell line derived from foreskin fibroblasts, isolated as described by Yu, J. et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324, 797-801 (2009). For differentiation of the iPS cells into trophoblast lineage using BMP4, the cells were grown in 10cm2 dishes (approximately 1 x 10e7 cells/dish) in feeder free conditions on Matrigel using mTeSR1 media containing 50 ng/ml BMP4 for 5 days (RND systems, Minneapolis, MN).

characteristic: description

text: Homo sapiens

text: Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells


text: Porse / Sandelin, Biotech Research and Innovation Center, University Of Copenhagen

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: male

characteristic: gender

text: wildtype

characteristic: genotype

text: Mus musculus

text: Bone Marrow-Derived Macrophages, WT

text: bone marrow-derived macrophages

characteristic: tissue


text: live

text: Generic

characteristic: NCBI submission package

text: male

text: UPF2 knockout

text: Mus musculus

characteristic: organism

text: Bone Marrow-Derived Macrophages, UPF2 KO

text: bone marrow-derived macrophages


characteristic: External Id

text: live

text: Generic

text: male

text: wildtype

text: Mus musculus

text: Liver, WT

text: liver

characteristic: title


characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: male

text: UPF2 knockout

text: Mus musculus

text: Liver, UPF2 KO

text: liver


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: SRA accession

text: Heterodera glycines

text: Heterodera glycines

characteristic: strain

text: Sample from Heterodera glycines


text: LMGR, NICHD, NIH

text: live

text: Generic

text: nucleosomal DNA

characteristic: assayed molecule

text: MATa ade2-1 can1-100 leu2-3,112 trp1-1 ura3-1

text: Saccharomyces cerevisiae

text: wild type control

text: YDC111 (W303)

text: wild type control 111U-2


text: LMGR, NICHD, NIH

characteristic: INSDC first public

text: live

text: Generic

text: nucleosomal DNA

text: Saccharomyces cerevisiae

text: wild type control

text: YDC111 (W303)

text: wild type control 111U-3


text: LMGR, NICHD, NIH

characteristic: INSDC last update

text: live

text: Generic

text: nucleosomal DNA

text: Saccharomyces cerevisiae

text: wild type +3AT

text: YDC111 (W303)

text: wild type +3AT 111A-2


text: LMGR, NICHD, NIH

text: live

text: Generic

text: nucleosomal DNA

text: Saccharomyces cerevisiae

text: wild type +3AT

text: YDC111 (W303)

text: wild type +3AT 111A-3


text: Dep. of Epigenetics Regulations, Institute of Molecular Genetics of the ASCR

text: live

text: Generic

characteristic: cell line

text: Mos inverted repeat

characteristic: expression

text: Homo sapiens

text: HEK293 cell line, MosIR

text: Small RNAs from HEK293 cells expressing Mos inverted repeat (MosIR)


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: HeLa

text: Mos inverted repeat

text: Homo sapiens

text: HeLa cell line, MosIR

text: Small RNAs from HeLa cells expressing Mos inverted repeat (MosIR)


text: live

text: Generic

text: Mos inverted repeat

text: Mus musculus

text: brain tissue, MosIR

characteristic: strain background

text: brain

text: Small RNAs from brain tissue of transgenic mice expressing Mos inverted repeat (MosIR)


text: live

text: Generic

text: Mos inverted repeat

text: Mus musculus

text: kidney tissue, MosIR

text: kidney

characteristic: tissue

text: Small RNAs from kidney tissue of transgenic mice expressing Mos inverted repeat (MosIR)


text: Molecular Cardiology, IRCCS-Policlinico San Donato

text: live

text: Generic

characteristic: NCBI submission package

text: Human Umbelical Vein Endothelial Cells

characteristic: cell type

text: Homo sapiens

text: atmospheric (about 21%) oxygen tension (normoxia)

characteristic: oxygen tension

text: Human Umbelical Vein Endothelial Cells (HUVEC)

text: Normoxic HUVEC_1


characteristic: External Id

text: live

text: Generic

text: Human Umbelical Vein Endothelial Cells

text: Homo sapiens

characteristic: organism

text: 1% oxygen tension (hypoxia)

text: Hypoxic HUVEC_1

characteristic: title


characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Human Umbelical Vein Endothelial Cells

text: Homo sapiens

text: Normoxic HUVEC_2


characteristic: INSDC first public

text: live

text: Generic

text: Human Umbelical Vein Endothelial Cells

text: Homo sapiens

text: 1% oxygen tension (hypoxia)

text: Hypoxic HUVEC_2


Campo sujo

text: Embrapa Genetic Resources and Biotechnology

characteristic: INSDC last update

text: live

text: Generic

text: uncultured soil bacterium

text: Uncultured soil bacterium 16s ribosomal RNA gene from campo sujo


cerrado denso

text: live

text: Generic

text: uncultured soil bacterium

text: Uncultured soil bacterium 16s ribosomal RNA gene from cerrado denso


cerrado sensu stricto

text: live

text: Generic

text: uncultured soil bacterium

text: Uncultured soil bacterium 16s ribosomal RNA gene from cerrado sensu stricto


Mata de galeria

text: live

text: Generic

text: uncultured soil bacterium

text: Uncultured soil bacterium 16s ribosomal RNA gene from Mata de galeria


T1 No Treatment

text: INDEAR

text: live

text: Generic

text: T1, June 2009, farmhouse grassland - Undisturbed treatment - we selected the site La Estrella (le), Buenos Aires, Argentina, with the nearby farmhouse grassland as undisturbed control. We took five samples distributed along a one-year period.

characteristic: description

text: soil metagenome


T2 No Treatment

text: INDEAR

text: live

text: Generic

text: T2, September 2009, farmhouse grassland - Undisturbed Treatment - we selected the site La Estrella (le), Buenos Aires, Argentina, with the nearby farmhouse grassland as undisturbed control. We took five samples distributed along a one-year period.

text: soil metagenome

text: T2, September 2009, farmhouse grassland - Undisturbed treatment


T3 No Treatment

text: INDEAR

text: live

text: Generic

text: T3, December 2009, farmhouse grassland - Undisturbed Treatment - we selected the site La Estrella (le), Buenos Aires, Argentina, with the nearby farmhouse grassland as undisturbed control. We took five samples distributed along a one-year period.

text: soil metagenome

text: T3, December 2009, farmhouse grassland - Undisturbed treatment


T4 No Treatment

text: INDEAR

text: live

text: Generic

text: T4, March 2010, farmhouse grassland - Undisturbed Treatment - we selected the site La Estrella (le), Buenos Aires, Argentina, with the nearby farmhouse grassland as undisturbed control. We took five samples distributed along a one-year period.

text: soil metagenome

text: T4, March 2010, farmhouse grassland - Undisturbed treatment


T5 No Treatment

text: INDEAR

text: live

text: Generic

text: T5, June 2010, farmhouse grassland - Undisturbed Treatment - we selected the site La Estrella (le), Buenos Aires, Argentina, with the nearby farmhouse grassland as undisturbed control. We took five samples distributed along a one-year period.

text: soil metagenome

text: T5, June 2010, farmhouse grassland - Undisturbed treatment


T1 Agro Treatment

text: INDEAR

text: live

text: Generic

text: T1, June 2009, wheat seeded - Disturbed Treatment - we selected the site La Estrella (le), Buenos Aires, Argentina, with the nearby farmhouse grassland as undisturbed control. We took five samples distributed along a one-year period.

text: soil metagenome

text: T1, June 2009, wheat seeded - Disturbed treatment


T2 Agro Treatment

text: INDEAR

text: live

text: Generic

text: T2, September 2009, wheat growing - Disturbed Treatment - we selected the site La Estrella (le), Buenos Aires, Argentina, with the nearby farmhouse grassland as undisturbed control. We took five samples distributed along a one-year period.

text: soil metagenome

text: T2, September 2009, wheat growing - Disturbed treatment


T3 Agro Treatment

text: INDEAR

text: live

text: Generic

text: T3, December 2009, wheat harvested - Disturbed Treatment - we selected the site La Estrella (le), Buenos Aires, Argentina, with the nearby farmhouse grassland as undisturbed control. We took five samples distributed along a one-year period.

text: soil metagenome

text: T3, December 2009, wheat harvested - Disturbed treatment


T4 Agro Treatment

text: INDEAR

text: live

text: Generic

text: T4, March 2010, soybean growing - Disturbed Treatment - we selected the site La Estrella (le), Buenos Aires, Argentina, with the nearby farmhouse grassland as undisturbed control. We took five samples distributed along a one-year period.

text: soil metagenome

text: T4, March 2010, soybean growing - Disturbed treatment


T5 Agro Treatment

text: INDEAR

text: live

text: Generic

text: T5, June 2010, soybean harvested - Disturbed Treatment - we selected the site La Estrella (le), Buenos Aires, Argentina, with the nearby farmhouse grassland as undisturbed control. We took five samples distributed along a one-year period.

text: soil metagenome

text: T5, June 2010, soybean harvested - Disturbed treatment


text: Joint Unit of Research in Genomics and Health: Centre for Public Health Research (CSISP) Cavanilles Institute for Biodiversity and Evolutionary Biology (University of València)

text: live

text: Generic

text: human gut metagenome

text: Sample 1


text: Washington University in St. Louis

text: live

text: Generic

text: [Clostridium] symbiosum

text: Fecal pellet from a mouse (c57Bl6) colonized with 10-gut bacteria. Mouse was fed Harlan Teklad Diet TD.09050

characteristic: sample source

text: mouse feces


text: Washington University in St. Louis

text: live

characteristic: INSDC status

text: Generic

text: [Clostridium] symbiosum

text: Fecal pellet from a mouse (c57Bl6) colonized with 10-gut bacteria. Mouse was fed Harlan Teklad Diet TD.09055

text: mouse feces


text: Washington University in St. Louis

text: live

text: Generic

characteristic: NCBI submission model

text: [Clostridium] symbiosum

text: Fecal pellet from a mouse (c57Bl6) colonized with 10-gut bacteria. Mouse was fed Harlan Teklad Diet TD.09051

text: mouse feces


text: Washington University in St. Louis

text: live

text: Generic

text: [Clostridium] symbiosum

text: Fecal pellet from a mouse (c57Bl6) colonized with 10-gut bacteria. Mouse was fed Harlan Teklad Diet TD.09058

text: mouse feces


text: Washington University in St. Louis

text: live

text: Generic

text: [Clostridium] symbiosum

text: Fecal pellet from a mouse (c57Bl6) colonized with 10-gut bacteria. Mouse was fed Harlan Teklad Diet TD.09054

text: mouse feces


text: Washington University in St. Louis

text: live

text: Generic

text: [Clostridium] symbiosum

text: Fecal pellet from a mouse (c57Bl6) colonized with 10-gut bacteria. Mouse was fed Harlan Teklad Diet TD.09057

text: mouse feces


text: Washington University in St. Louis

text: live

text: Generic

text: [Clostridium] symbiosum

text: Fecal pellet from a mouse (c57Bl6) colonized with 10-gut bacteria. Mouse was fed Harlan Teklad Diet TD.09059

text: mouse feces


text: Washington University in St. Louis

text: live

text: Generic

text: [Clostridium] symbiosum

text: Fecal pellet from a mouse (c57Bl6) colonized with 10-gut bacteria. Mouse was fed Harlan Teklad Diet TD.09049

text: mouse feces


text: Washington University in St. Louis

text: live

text: Generic

text: [Clostridium] symbiosum

text: Fecal pellet from a mouse (c57Bl6) colonized with 10-gut bacteria. Mouse was fed Harlan Teklad Diet TD.09056

text: mouse feces


text: Washington University in St. Louis

text: live

text: Generic

text: [Clostridium] symbiosum

text: Fecal pellet from a mouse (c57Bl6) colonized with 10-gut bacteria. Mouse was fed Harlan Teklad Diet TD.09053

text: mouse feces


text: Washington University in St. Louis

text: live

text: Generic

text: [Clostridium] symbiosum

text: Fecal pellet from a mouse (c57Bl6) colonized with 10-gut bacteria. Mouse was fed Harlan Teklad Diet TD.09052

text: mouse feces