name: 1127610036758 Acinetobacter baumannii IS-123 ACINE11-BP8KB-A3NB-01-630 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Total DNA isolated from Acinetobacter baumannii IS-123

text: Acinetobacter baumannii IS-123

text: Generic sample from Acinetobacter baumannii IS-123


name: 1127562028736 Acinetobacter radioresistens WC-A-157 ACINE12-BP3KB-A4NB-01-578 Sample

status: PUBLIC

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Total DNA isolated from Acinetobacter radioresistens WC-A-157

characteristic: description

text: Acinetobacter radioresistens WC-A-157

characteristic: organism

tag: attribute

characteristic: strain

text: Generic sample from Acinetobacter radioresistens WC-A-157

characteristic: title


text: J. Craig Venter Institute

text: live

text: Generic

text: Whole genome shortgun sequencing of Staphylococcus aureus 2819 using 454 technology

text: Staphylococcus aureus 2819


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 1.1.03.24_64

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Selenomonas noxia strain ATCC 43541

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft29.3x;56

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Selenomonas noxia ATCC 43541

text: Selenomonas noxia ATCC 43541

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, Sanger

characteristic: sequencing method

characteristic: sop

text: ATCC 43541, VPI D9B-5

text: Homo sapiens

characteristic: specific host

text: ATCC 43541

text: MIGS Cultured Bacterial/Archaeal sample from Selenomonas noxia ATCC 43541


characteristic: External Id

text: DOE-GEBA 2007

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: IMG/ER 2.8

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

characteristic: Greengenes ID

text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: isolated by RA Lewin

characteristic: Isolation Comments

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: RA Lewin

characteristic: collected by

text: Viet Nam: Nha Trang

characteristic: country

text: Keywords: GSC:MIGS:2.1

characteristic: description

characteristic: investigation type

text: beach sand from Nha Trang

characteristic: isolation site

text: beach sand

characteristic: isolation-source

text: 12.250 N 109.199 E

text: Marivirga tractuosa DSM 4126

characteristic: organism

text: Marivirga tractuosa Lewin H43, DSM 4126

text: DSM 4126, ATCC 23168, IFO 15989, NBRC 15989, NCMB 1408

text: DSM 4126

characteristic: strain

characteristic: temperature optimum

text: Mesophile

characteristic: temperature range

text: Marivirga tractuosa DSM 4126, complete genome.

characteristic: title

text: type strain of Marivirga tractuosa

characteristic: type material


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

text: Newbler v. 2.0.0-Eclipse

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Corynebacterium aurimucosum strain ATCC 700975

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft19.89x;101

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Corynebacterium aurimucosum ATCC 700975

text: Corynebacterium aurimucosum ATCC 700975

characteristic: project name

text: Reference Genome

text: not determined

text: 454, Sanger

characteristic: sequencing method

characteristic: sop

text: ATCC 700975, DSM 44827, CCUG 48176

text: Homo sapiens

characteristic: specific host

text: ATCC 700975

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium aurimucosum ATCC 700975


Library 1

characteristic: External Id

text: Stanford University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: First single copy of chromosome 6 of P0 (patient zero) (library 1). This single copy of chromosome 6 was amplified with multiple strand displacement and converted into Illumina sequencing library.

characteristic: description

text: Homo sapiens

characteristic: organism

text: Amplified materials from a single copy of Patient Zero's chromosome 6 (first copy)

characteristic: title


text: Gastrointestinal tract

characteristic: Body Sample Site

text: DOE-GEBA 2009

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Gram-

characteristic: Gram Staining

text: Sus scrofa

characteristic: Host Name

text: live

text: Generic

text: Nonsporulating

characteristic: Sporulation

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Keywords: GSC:MIGS:2.1

text: Host

characteristic: environment

characteristic: investigation type

text: Pig faeces

characteristic: isolation site

text: feces

characteristic: isolation-source

text: Bacteroides helcogenes P 36-108

text: Bacteroides helcogenes P 36-108, DSM 20613

text: DSM 20613, ATCC 35417

text: anaerobe

text: P 36-108

characteristic: strain

text: Mesophile

characteristic: temperature range

text: Bacteroides helcogenes P 36-108, complete genome.

text: type strain of Bacteroides helcogenes

characteristic: type material


characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Whole genome shortgun sequencing of Staphylococcus aureus 9066 using 454 technology

characteristic: description

text: Staphylococcus aureus 9066

characteristic: organism

characteristic: title


text: J. Craig Venter Institute

text: live

text: Generic

text: Whole genome shotgun sequencing of Staphylococcus aureus 2276 using 454 technology

text: Staphylococcus aureus 2276


text: DOE-GEBA 2009

characteristic: Funding Program

characteristic: GOLD Stamp ID

characteristic: Greengenes ID

text: live

text: isolated by M. L. Miroshnichenko

characteristic: Isolation Comments

text: Generic

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: M. L. Miroshnichenko

characteristic: collected by

text: Pacific Ocean: East Pacific Rise

characteristic: country

text: Keywords: GSC:MIGS:2.1

text: Deep sea, Hydrothermal vent, Marine

characteristic: environment

characteristic: investigation type

text: Deep-sea hot vent; 13N, East Pacific Rise

characteristic: isolation site

text: deep sea hot vent

text: Nonmotile

characteristic: motility

text: type strain of Oceanithermus profundus

characteristic: note orgmod

text: Oceanithermus profundus DSM 14977

characteristic: ph

text: Oceanithermus profundus 506, DSM 14977

characteristic: project name

text: DSM 14977, VKM B-2274

text: microaerophilic

text: DSM 14977

characteristic: temperature optimum

text: Thermophile

text: Oceanithermus profundus DSM 14977, complete genome.

text: chemoorganoheterotroph

text: type strain of Oceanithermus profundus


characteristic: External Id

text: University of Genoa

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Bacterial 16SrDNA read sequences (V6 hypervariable region) from Continuous Plankton Recorder (CPR) samples collected in the North Sea

characteristic: description

text: metagenomes

characteristic: organism

text: Bacterial 16SrDNA read sequences from CPR samples

characteristic: title


Parus major transcriptome sequencing

text: University of Sheffield

text: live

text: Generic

text: Ten unrelated great tit fledglings were sampled from across the Wytham Woods, UK, population and brain, heart, kidney, liver, muscle, pancreas, skin and testes/ovaries dissected from each individual at between three and 23 minutes after death. Each chick was sexed at sampling and sex was later confirmed molecularly with the Z-002A marker. Tissues were stored in RNALater (Ambion) to prevent RNA degradation. RNA was extracted using the TRIzol* (Invitrogen) method. RNA quantity and degradation was tested using a Nanodrop (Agilent) with each tissue yielding a mean (SE) of 44.4 (7.5) ug of RNA with mean (SE) RNA integrity number (RIN) of 8.37 (0.21). For each tissue 1ug of RNA from each bird was pooled, i.e. to make 8 pools, each containing 10ug of RNA.

text: Parus major

text: Parus major transcriptome sequencing


Tumor RNA

text: Max Planck Institute for Molecular Genetics

text: live

text: Generic

text: Homo sapiens

text: Patient tumor RNA


Control melanocytes RNA

text: live

text: Generic

text: Homo sapiens

text: Control melanocytes RNA


text: University of Washington Genome Sciences - Shendure Lab

text: live

text: Generic

text: A long-insert fosmid clone library was constructed using genomic DNA from individual GM20847 as previously described (Raymond CK et al, 2005), with minor modifications as follows. A lymphoblastoid cell line for the individual of interest (GM20847, Coriell) was cultured according to standard techniques. High molecular weight genomic DNA (HMW gDNA) was isolated from ~1.4e7 cells using the Gentra Puregene Cell Kit (QIAGEN, 158388). 8 ug of HMW gDNA was sheared using a Bioruptor sonicator (Diagenode) in 60 uL of TE8 for 20 seconds on the medium setting. The sheared DNA was electrophoresed in a 1% Ultrapure agarose gel (Invitrogen, 16500100) and using a Bio-Rad CHEF-DR II Pulsed Field Gel Electrophoresis apparatus at 160V with an initial switching time (Initial A time) of 1 second, a final switching time (Final A time) of 6 seconds, and a run-time of 20 hours. The gel was run for ~16 hours, stained with Ethidium Bromide according to standard practice, the lanes containing ladder were removed and imaged, and the gel was reconstructed so as to avoid exposure of the sample DNA to UV light. A band corresponding to ~35-45 kb was excised from the gel, DNA was electroeluted from the gel as previously described (Strong SJ et al, 1997), and purified by ethanol precipitation. Size-selected DNA was end-repaired using the End-IT kit (Epicentre, ER0720), purified by phenol-chloroform extraction and ethanol precipitation, and blunt-end ligated to prelinearized pCC1FOS (Epicentre, Cat. No. CCFOS110) according to manufacturer's specifications (using ~125 ng of input DNA and a 10:1 vector:insert molar ratio). Packaging reaction using MaxPlax Lambda packaging extract was performed according to manufacturer's instructions except that chloroform was not added after diluting using the Phage Dilution Buffer. TransforMax EPI300 T1R Chemically Competent E. coli (Epicentre, Cat. No. C300C105) were expanded for bulk infection in 22ml LB with 10mM MgSO4 and 0.2% maltose in a shaking incubator for 14 hours at 37?C. 16ml LB with 10mM MgSO4 and 0.2% Maltose was inoculated with 1ml of the expanded culture and grown with shaking at 250rpm and 37?C until OD600 ~ 0.7. Cells were then pelleted by centrifugation at 2000rpm and 4?C for 10 minutes. Pellet was resuspended in 9.6ml 10mM MgSO4 and infected by room temperature incubation with 240ul packaged phage. After 30 min, 9.6 ml LB was added and cells were incubated for 30 min at 37C with shaking at 175rpm. Total library complexity of ~2.5x10^6 clones was estimated by plating.

text: Homo sapiens

text: fraction1 sample


text: live

text: Generic

text: Homo sapiens

text: fraction2 sample


text: live

text: Generic

text: Homo sapiens

text: fraction3 sample


text: live

text: Generic

text: Homo sapiens

text: fraction4 sample


text: live

text: Generic

text: Homo sapiens

text: fraction5 sample


text: live

text: Generic

text: Homo sapiens

text: fraction6 sample


text: live

text: Generic

text: Homo sapiens

text: fraction7 sample


text: live

text: Generic

text: Homo sapiens

text: fraction8 sample


text: live

text: Generic

text: Homo sapiens

text: fraction9 sample


text: live

text: Generic

text: Homo sapiens

text: fraction10 sample


text: live

text: Generic

text: Homo sapiens

text: fraction11 sample


text: live

text: Generic

text: Homo sapiens

text: fraction12 sample


text: live

text: Generic

text: Homo sapiens

text: fraction13 sample


text: live

text: Generic

text: Homo sapiens

text: fraction14 sample


text: live

text: Generic

text: Homo sapiens

text: fraction15 sample


text: live

text: Generic

text: Homo sapiens

text: fraction16 sample


text: live

text: Generic

text: Homo sapiens

text: fraction17 sample


text: live

text: Generic

text: Homo sapiens

text: fraction18 sample


text: live

text: Generic

text: Homo sapiens

text: fraction19 sample


text: live

text: Generic

text: Homo sapiens

text: fraction20 sample


text: live

text: Generic

text: Homo sapiens

text: fraction21 sample


text: live

text: Generic

text: Homo sapiens

text: fraction22 sample


text: live

text: Generic

text: Homo sapiens

text: fraction23 sample


text: live

text: Generic

text: Homo sapiens

text: fraction24 sample


text: live

text: Generic

text: Homo sapiens

text: fraction25 sample


text: live

text: Generic

text: Homo sapiens

text: fraction26 sample


text: live

text: Generic

text: Homo sapiens

text: fraction27 sample


text: live

text: Generic

text: Homo sapiens

text: fraction28 sample


text: live

text: Generic

text: Homo sapiens

text: fraction29 sample


text: live

text: Generic

text: Homo sapiens

text: fraction30 sample


text: live

text: Generic

text: Homo sapiens

text: fraction31 sample


text: live

text: Generic

text: Homo sapiens

text: fraction32 sample


text: live

text: Generic

text: Homo sapiens

text: fraction33 sample


text: live

text: Generic

text: Homo sapiens

text: fraction34 sample


text: live

text: Generic

text: Homo sapiens

text: fraction35 sample


text: live

text: Generic

text: Homo sapiens

text: fraction36 sample


text: live

text: Generic

text: Homo sapiens

text: fraction37 sample


text: live

text: Generic

text: Homo sapiens

text: fraction38 sample


text: live

text: Generic

text: Homo sapiens

text: fraction39 sample


text: live

text: Generic

text: Homo sapiens

text: fraction40 sample


text: live

text: Generic

text: Homo sapiens

text: fraction41 sample


text: live

text: Generic

text: Homo sapiens

text: fraction42 sample


text: live

text: Generic

text: Homo sapiens

text: fraction43 sample


text: live

text: Generic

text: Homo sapiens

text: fraction44 sample


text: live

text: Generic

text: Homo sapiens

text: fraction45 sample


text: live

text: Generic

text: Homo sapiens

text: fraction46 sample


text: live

text: Generic

text: Homo sapiens

text: fraction47 sample


text: live

text: Generic

text: Homo sapiens

text: fraction48 sample


text: live

text: Generic

text: Homo sapiens

text: fraction49 sample


text: live

text: Generic

text: Homo sapiens

text: fraction50 sample


text: live

text: Generic

text: Homo sapiens

text: fraction51 sample


text: live

text: Generic

text: Homo sapiens

text: fraction52 sample


text: live

text: Generic

text: Homo sapiens

text: fraction53 sample


text: live

text: Generic

text: Homo sapiens

text: fraction54 sample


text: live

text: Generic

text: Homo sapiens

text: fraction55 sample


text: live

text: Generic

text: Homo sapiens

text: fraction56 sample


text: live

text: Generic

text: Homo sapiens

text: fraction57 sample


text: live

text: Generic

text: Homo sapiens

text: fraction58 sample


text: live

text: Generic

text: Homo sapiens

text: fraction59 sample


text: live

text: Generic

text: Homo sapiens

text: fraction60 sample


text: live

text: Generic

text: Homo sapiens

text: fraction61 sample


text: live

text: Generic

text: Homo sapiens

text: fraction62 sample


text: live

text: Generic

text: Homo sapiens

text: fraction63 sample


text: live

text: Generic

text: Homo sapiens

text: fraction64 sample


text: live

text: Generic

text: Homo sapiens

text: fraction65 sample


text: live

text: Generic

text: Homo sapiens

text: fraction66 sample


text: live

text: Generic

text: Homo sapiens

text: fraction67 sample


text: live

text: Generic

text: Homo sapiens

text: fraction68 sample


text: live

text: Generic

text: Homo sapiens

text: fraction69 sample


text: live

text: Generic

text: Homo sapiens

text: fraction70 sample


text: live

text: Generic

text: Homo sapiens

text: fraction71 sample


text: live

text: Generic

text: Homo sapiens

text: fraction72 sample


text: live

text: Generic

text: Homo sapiens

text: fraction73 sample


text: live

text: Generic

text: Homo sapiens

text: fraction74 sample


text: live

text: Generic

text: Homo sapiens

text: fraction75 sample


text: live

text: Generic

text: Homo sapiens

text: fraction76 sample


text: live

text: Generic

text: Homo sapiens

text: fraction77 sample


text: live

text: Generic

text: Homo sapiens

text: fraction78 sample


text: live

text: Generic

text: Homo sapiens

text: fraction79 sample


text: live

text: Generic

text: Homo sapiens

text: fraction80 sample


text: live

text: Generic

text: Homo sapiens

text: fraction81 sample


text: live

text: Generic

text: Homo sapiens

text: fraction82 sample


text: live

text: Generic

text: Homo sapiens

text: fraction83 sample


text: live

text: Generic

text: Homo sapiens

text: fraction84 sample


text: live

text: Generic

text: Homo sapiens

text: fraction85 sample


text: live

text: Generic

text: Homo sapiens

text: fraction86 sample


text: live

text: Generic

text: Homo sapiens

text: fraction87 sample


text: live

text: Generic

text: Homo sapiens

text: fraction88 sample


text: live

text: Generic

text: Homo sapiens

text: fraction89 sample


text: live

text: Generic

text: Homo sapiens

text: fraction90 sample


text: live

text: Generic

text: Homo sapiens

text: fraction91 sample


text: live

text: Generic

text: Homo sapiens

text: fraction92 sample


text: live

text: Generic

text: Homo sapiens

text: fraction93 sample


text: live

text: Generic

text: Homo sapiens

text: fraction94 sample


text: live

text: Generic

text: Homo sapiens

text: fraction95 sample


text: live

text: Generic

text: Homo sapiens

text: fraction96 sample


text: live

text: Generic

text: Homo sapiens

text: fraction97 sample


text: live

text: Generic

text: Homo sapiens

text: fraction98 sample


text: live

text: Generic

text: Homo sapiens

text: fraction99 sample


text: live

text: Generic

text: Homo sapiens

text: fraction100 sample


text: live

text: Generic

text: Homo sapiens

text: fraction101 sample


text: live

text: Generic

text: Homo sapiens

text: fraction102 sample


text: live

text: Generic

text: Homo sapiens

text: fraction103 sample


text: live

text: Generic

text: Homo sapiens

text: fraction104 sample


text: live

text: Generic

text: Homo sapiens

text: fraction105 sample


text: live

text: Generic

text: Homo sapiens

text: fraction106 sample


text: live

text: Generic

text: Homo sapiens

text: fraction107 sample


text: live

text: Generic

text: Homo sapiens

text: fraction108 sample


text: live

text: Generic

text: Homo sapiens

text: fraction109 sample


text: live

text: Generic

text: Homo sapiens

text: fraction110 sample


text: live

text: Generic

text: Homo sapiens

text: fraction111 sample


text: live

text: Generic

text: Homo sapiens

text: fraction112 sample


text: live

text: Generic

text: Homo sapiens

text: fraction113 sample


text: live

text: Generic

text: Homo sapiens

text: fraction114 sample


text: live

text: Generic

text: Homo sapiens

text: fraction115 sample


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: f0_female of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: f0_male of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_1 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_10 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_11 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_12 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_13 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_14 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_15 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_16 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_17 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_18 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_19 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_2 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_20 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_21 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_22 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_23 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_24 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_25 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_26 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_27 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_28 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_29 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_3 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_30 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_31 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_32 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_33 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_34 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_35 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_36 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_37 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_38 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_39 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_4 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_40 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_41 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_42 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_43 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_44 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_45 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_46 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_47 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_48 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_49 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_5 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_50 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_51 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_52 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_53 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_54 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_55 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_56 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_57 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_58 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_59 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_6 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_60 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_61 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_62 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_63 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_64 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_65 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_66 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_67 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_68 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_69 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_7 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_70 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_71 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_72 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_73 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_74 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_75 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_76 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_77 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_78 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_79 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_8 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_80 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_81 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_82 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_83 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_84 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_85 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_86 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_87 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_88 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_89 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_9 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_90 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_91 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_92 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_93 of teleost fish


text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: progeny_94 of teleost fish


default

text: University of Oregon

text: live

text: Generic

text: Spotted Gar SbfI RAD-seq genomic DNA

text: teleost fish

text: default sample


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 1.1.03.24

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Aeromicrobium marinum strain DSM 15272

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 5: Non-contiguous Finished71.1x;16

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Aeromicrobium marinum DSM 15272

text: Aeromicrobium marinum DSM 15272

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: DSM 15272, LMG 21768

text: Homo sapiens

characteristic: specific host

text: DSM 15272

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Aeromicrobium marinum DSM 15272


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.0-Eclipse

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Brevibacterium mcbrellnerii strain ATCC 49030

characteristic: description

text: Level 2: High-Quality Draft30.14x;96

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Brevibacterium mcbrellneri ATCC 49030

characteristic: organism

text: Brevibacterium mcbrellneri ATCC 49030

characteristic: project name

text: Reference Genome

text: not determined

text: ATCC 49030

text: Homo sapiens

text: ATCC 49030

text: MIGS Cultured Bacterial/Archaeal sample from Brevibacterium mcbrellneri ATCC 49030

characteristic: title


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.0.0-Eclipse

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Corynebacterium efficiens strain DSM 44549

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft24.25x;137

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: skin

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Corynebacterium efficiens YS-314

text: Corynebacterium efficiens YS-314, DSM 44549

text: Reference Genome

text: not determined

text: 454, Sanger

characteristic: sequencing method

characteristic: sop

text: DSM 44549, CCM 7123, CCUG 47130

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium efficiens YS-314


characteristic: External Id

text: Princeton University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: MSG library from parental strain, D. simulans w501.

characteristic: description

text: Drosophila simulans

characteristic: organism

text: Multiplexed Shotgun Genotyping for Rapid and Efficient Genetic Mapping


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler 1.1.03.24

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Corynebacterium genitalium strain ATCC 33030

characteristic: estimated size

characteristic: feature

text: Level 5: Non-contiguous Finished105.2x;3

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: not determined

text: not determined

text: Corynebacterium genitalium ATCC 33030

text: Corynebacterium genitalium ATCC 33030

characteristic: project name

text: Reference Genome

text: not determined

text: ATCC 33030, NCTC 11859

text: Homo sapiens

text: ATCC 33030

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium genitalium ATCC 33030

characteristic: title


characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Line TN1.1, from population 1 from Tunisian collection

characteristic: description

text: Medicago truncatula

text: Mtr WGS TN1.1


text: Princeton University

text: live

text: Generic

text: MSG library for parental strain Drosophila sechellia w1

text: Drosophila sechellia

characteristic: organism


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.0.0-Eclipse

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Leuconostoc mesenteroides strain ATCC 19254

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft33.37x;126

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Leuconostoc mesenteroides cremoris ATCC 19254

text: Reference Genome

text: not determined

text: 454-GS-FLX, Sanger

characteristic: sequencing method

characteristic: sop

text: ATCC 19254, NCDO 543

text: Homo sapiens

characteristic: specific host

text: ATCC 19254

text: cremoris

characteristic: sub species

text: MIGS Cultured Bacterial/Archaeal sample from Leuconostoc mesenteroides subsp. cremoris ATCC 19254


characteristic: External Id

text: University of California, Berkeley

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: uncultured bacteria (human infant) ensemble

characteristic: organism

text: Baby UC1 stool sample

characteristic: title


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.0.0-Eclipse

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Mobiluncus mulieris strain ATCC 35243

characteristic: description

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft25.63x;65

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Mobiluncus mulieris ATCC 35243

text: Mobiluncus mulieris ATCC 35243

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, Sanger

text: ATCC 35243

text: Homo sapiens

text: ATCC 35243

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Mobiluncus mulieris ATCC 35243


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.0-Eclipse

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Weissella paramesenteroides strain ATCC 33313

text: Level 3: Improved-High-Quality Draft41.12x;36

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Weissella paramesenteroides ATCC 33313

characteristic: organism

text: Weissella paramesenteroides ATCC 33313

text: Reference Genome

text: not determined

text: 454-GS-FLX, Sanger

characteristic: sequencing method

characteristic: sop

text: ATCC 33313, CCUG 30068, CIP 102421, DSM 20288

text: Homo sapiens

characteristic: specific host

text: ATCC 33313

text: MIGS Cultured Bacterial/Archaeal sample from Weissella paramesenteroides ATCC 33313

characteristic: title


text: Research Center for Epigenetic Disease, The University of Tokyo

text: live

text: Generic

text: HA tag was fused to Smc3

characteristic: description

text: Saccharomyces cerevisiae

text: ChIP fraction of Smc3 ChIP


Smc3 WCE

text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction of Smc3 ChIP


Smc3E1155Q ChIP

text: live

text: Generic

text: Saccharomyces cerevisiae

text: ChIP fraction of Smc3 ATP hydrolysis mutant


Smc3E1155Q WCE

text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction of Smc3 ATP hydrolysis mutant


Scc2 ChIP

text: live

text: Generic

text: Saccharomyces cerevisiae

text: ChIP fraction of Scc2 ChIP


Scc2 WCE

text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction of Scc2 ChIP


Scc4 ChIP

text: live

text: Generic

text: Saccharomyces cerevisiae

text: ChIP fraction of Scc4 ChIP


Scc4 WCE

text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction of Scc4 ChIP


Rpo21 ChIP

text: live

text: Generic

text: Saccharomyces cerevisiae

text: ChIP fraction of Rpo21ChIP


Rpo21 WCE

text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction of Rpo21 ChIP


Scc1(K16586) ChIP (cen14 pop-out)

text: live

text: Generic

text: Saccharomyces cerevisiae

text: ChIP fraction of Scc1 ChIP


Scc1(K16586) WCE (cen14 pop-out)

text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction of Scc1 ChIP


Scc1(K16670) ChIP (chl4 delta)

text: live

text: Generic

text: Saccharomyces cerevisiae

text: ChIP fraction of Scc1 ChIP


Scc1(K16670) WCE (chl4 delta)

text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction of Scc1 ChIP


Rpc128 ChIP

text: live

text: Generic

text: Saccharomyces cerevisiae

text: ChIP fraction of Rpc128 ChIP


Rpc128 WCE

text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction of Rpc128 ChIP


Spt15 ChIP

text: live

text: Generic

text: Saccharomyces cerevisiae

text: ChIP fraction of Spt15 ChIP


Spt15 WCE

text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction of Spt15WCE


Yeast strain 59A

text: INRA

text: live

text: Generic

text: The haploid S. cerevisiae 59A is descended from the diploid industrial wine strain EC1118. Strain 59A was retained for similar fermentation characteristics to those of the original diploid parent EC1118. Ambroset C, Petit M, Brion C, Sanchez I, Delobel P, Guerin C, Chiapello H, Nicolas P, Bigey F, Dequin S, Blondin B. Deciphering the molecular basis of wine yeast fermentation traits using a combined genetic and genomic approach. G3 (Bethesda). 2011 Sep;1(4):263-81.

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae haploid derivative of wine yeast EC1118


text: National Key Laboratory of Plant Molecular Genetics, Institute of plant physiology & ecology, SIBS, CAS

text: live

text: Generic

characteristic: age

characteristic: cultivation temperature

characteristic: ecotype

text: wildtype

text: Arabidopsis thaliana

text: Col-0_grown_at 22℃

text: seedlings

characteristic: tissue

text: Col-0_grown_at 22C


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: wildtype

text: Arabidopsis thaliana

text: Col-0_grown_at 30℃

text: seedlings

text: Col-0_grown_at 30C


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: transgene Bri1-Xa21 plant

text: Arabidopsis thaliana

text: NRG1_grown_at 22℃

text: seedlings

text: NRG1_grown_at 22C


text: live

text: Generic

characteristic: SRA accession

text: transgene Bri1-Xa21 plant

text: Arabidopsis thaliana

characteristic: organism

text: NRG1_grown_at 30℃

text: seedlings

text: NRG1_grown_at 30C


text: live

text: Generic

text: 30℃ to 22℃

text: transgene Bri1-Xa21 plant

text: Arabidopsis thaliana

text: NRG1_grown_from 30℃ to 22℃

text: seedlings

text: NRG1_grown_from 30C to 22C


swine feces microbiota day0 medicated

text: USDA-ARS

text: live

text: Generic

text: gut metagenome

text: Antibiotic effects on the swine intestinal microbiome


swine feces microbiota day14 medicated

text: USDA-ARS

text: live

text: Generic

text: gut metagenome


swine feces microbiota day0 control

text: USDA-ARS

text: live

text: Generic

text: gut metagenome


swine feces microbiota day14 control

text: USDA-ARS

text: live

text: Generic

text: gut metagenome


name: swine feces microbiota 16S rDNA phlotype, 0 days

text: USDA-ARS

text: live

text: Generic

text: gut metagenome


name: swine feces microbiota 16S rDNA phlotype, 14 days

text: USDA-ARS

text: live

text: Generic

text: gut metagenome


text: Institute for Genomics and Systems Biology, University of Chicago

text: live

text: Generic

characteristic: antibody name

characteristic: developmental stage

text: White Lab

characteristic: manufacturer

text: Drosophila yakuba

text: D.yak_E0-4h_KW3-Trl-D2_ChIPSeq_1 and 2


text: live

text: Generic

text: Drosophila yakuba

characteristic: title


text: live

text: Generic

text: White Lab

text: Drosophila yakuba

text: D.yak_WPP_KW3-Trl-D2_ChIPSeq_1 and 2


text: live

text: Generic

text: White Lab

text: Drosophila yakuba


text: live

text: Generic

text: White Lab

text: Drosophila yakuba

text: D.yak_E0-4h_KW3-Psq-D2_ChIPSeq_1 and 2


text: live

text: Generic

text: White Lab

text: Drosophila yakuba

text: D.yak_E0-4h_KW3-Pcl-D2_ChIPSeq_1 and 2


text: live

text: Generic

text: White Lab

text: Drosophila simulans

text: D.sim_E0-4h_KW3-Trl-D2_ChIPSeq_1 and 2


text: live

text: Generic

text: Drosophila simulans


text: live

text: Generic

text: White Lab

text: Drosophila simulans

text: D.sim_E0-4h_KW3-Kr-D2_ChIPSeq_1 and 2


text: live

text: Generic

text: White Lab

text: Drosophila simulans

text: D.sim_E0-4h_KW3-Pcl-D2_ChIPSeq_1 and 2


text: live

text: Generic

text: White Lab

text: Drosophila simulans

text: D.sim_WPP_KW3-Pcl-D2_ChIPSeq_1 and 2


text: live

text: Generic

characteristic: catalog

text: Upstate-Millipore

text: Drosophila simulans

text: D.sim_WPP_H3K27me3_ChIPSeq_1 and 2


text: live

text: Generic

text: Upstate-Millipore

text: Drosophila simulans

text: D.sim_E0-4h_H3K27me3_ChIPSeq_1 and 2


text: live

text: Generic

text: Upstate-Millipore

text: Drosophila pseudoobscura

text: D.pse_E0-4h_H3K27me3_ChIPSeq_1 and 2


text: live

text: Generic

text: Drosophila pseudoobscura


text: live

text: Generic

text: White Lab

text: Drosophila pseudoobscura

text: D.pse_E0-4h_KW3-Psq-D2_ChIPSeq_1 and 2


text: live

text: Generic

text: White Lab

text: Drosophila pseudoobscura

text: D.pse_E0-4h_KW3-Trl-D2_ChIPSeq_1 and 2


text: live

text: Generic

text: Upstate-Millipore

text: Drosophila pseudoobscura

text: D.pse_WPP_H3K27me3_ChIPSeq_1 and 2


text: Department of Chemistry and Biochemistry, University of California Los Angeles

text: live

text: Generic

text: single-end

characteristic: library type

text: TAP

characteristic: medium

text: Chlamydomonas reinhardtii

characteristic: sequencing cycles / read length

text: Chlamydomonas cultured cells

characteristic: strain

text: Chlamydomonas reinhardtii 2137 - TAP supplemented with a revised trace element recipe - 1


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: single-end

text: TAP

text: Chlamydomonas reinhardtii

text: Chlamydomonas cultured cells

text: Chlamydomonas reinhardtii 2137 - TAP supplemented with a revised trace element recipe - 2


text: Division of Nutritional Sciences, Cornell University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: mouse embryonic fibroblast

characteristic: cell type

text: 129S4/SvJae, C57BL/6, CBA

characteristic: genetic background

text: TSC2 Wild Type

characteristic: genotype

text: Mus musculus

text: Small (1 ribosome)

characteristic: sample type

text: Embryonic Fibroblast

text: Small TSC2 WT + DMSO

text: No Treatment

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Wild Type

text: Mus musculus

characteristic: organism

text: Medium (2-4 ribosomes)

text: Embryonic Fibroblast

text: Medium TSC2 WT + DMSO

characteristic: title

text: No Treatment


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Wild Type

text: Mus musculus

text: Large (≥5 ribosomes)

text: Embryonic Fibroblast

text: Large TSC2 WT + DMSO

text: No Treatment


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Knock Out

text: Mus musculus

text: Small (1 ribosome)

text: Embryonic Fibroblast

text: Small TSC2 KO + DMSO

text: No Treatment


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Knock Out

text: Mus musculus

text: Medium (2-4 ribosomes)

text: Embryonic Fibroblast

text: Medium TSC2 KO + DMSO

text: No Treatment


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Knock Out

text: Mus musculus

text: Large (≥5 ribosomes)

text: Embryonic Fibroblast

text: Large TSC2 KO + DMSO

text: No Treatment


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Wild Type

text: Mus musculus

text: Small (1 ribosome)

text: Embryonic Fibroblast

text: Small TSC2 WT + Rapa (30min)

text: 20nM Rapamycin 40min


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Wild Type

text: Mus musculus

text: Medium (2-4 ribosomes)

text: Embryonic Fibroblast

text: Medium TSC2 WT + Rapa (30min)

text: 20nM Rapamycin 40min


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Wild Type

text: Mus musculus

text: Large (≥5 ribosomes)

text: Embryonic Fibroblast

text: Large TSC2 WT + Rapa (30min)

text: 20nM Rapamycin 40min


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Wild Type

text: Mus musculus

text: Small (1 ribosome)

text: Embryonic Fibroblast

text: Small TSC2 WT

text: No Treatment


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Wild Type

text: Mus musculus

text: Medium (2-4 ribosomes)

text: Embryonic Fibroblast

text: Medium TSC2 WT

text: No Treatment


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Wild Type

text: Mus musculus

text: Large (≥5 ribosomes)

text: Embryonic Fibroblast

text: Large TSC2 WT

text: No Treatment


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Knock Out

text: Mus musculus

text: Small (1 ribosome)

text: Embryonic Fibroblast

text: Small TSC2 KO

text: No Treatment


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Knock Out

text: Mus musculus

text: Medium (2-4 ribosomes)

text: Embryonic Fibroblast

text: Medium TSC2 KO

text: No Treatment


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Knock Out

text: Mus musculus

text: Large (≥5 ribosomes)

text: Embryonic Fibroblast

text: Large TSC2 KO

text: No Treatment


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Wild Type

text: Mus musculus

text: Small (1 ribosome)

text: Embryonic Fibroblast

text: Small TSC2 WT + Rapa (3hr)

text: 20nM Rapamycin 3hrs


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Wild Type

text: Mus musculus

text: Medium (2-4 ribosomes)

text: Embryonic Fibroblast

text: Medium TSC2 WT + Rapa (3hr)

text: 20nM Rapamycin 3hrs


text: live

text: Generic

text: mouse embryonic fibroblast

text: 129S4/SvJae, C57BL/6, CBA

text: TSC2 Wild Type

text: Mus musculus

text: Large (≥5 ribosomes)

text: Embryonic Fibroblast

text: Large TSC2 WT + Rapa (3hr)

text: 20nM Rapamycin 3hrs


text: Friedrich Miescher Institute for Biomedical Research

text: live

text: Generic

text: Embryonic Stem Cells (ESCs)

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

characteristic: strain

text: ES [RNA_Seq]


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Neuronal Progenitors (NP)

text: wild type

text: Mus musculus

text: Neuronal Progenitors (NP)

text: NP [RNA_Seq]


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Terminally differentiated Neurons (TN)

text: wild type

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: TN [RNA_Seq]


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Embryonic Stem Cells (ESCs)

characteristic: chip antibody

text: wild type

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

text: ES_H3K27me3_technical_replicate_a1 [ChIP-Seq]


text: live

text: Generic

text: Embryonic Stem Cells (ESCs)

characteristic: cell type

text: wild type

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

text: ES_H3K27me3_technical _replicate_a2 [ChIP-Seq]


text: live

text: Generic

text: Embryonic Stem Cells (ESCs)

text: wild type

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

text: ES_H3K27me3_biological_replicate_b1 [ChIP-Seq]


text: live

text: Generic

text: Embryonic Stem Cells (ESCs)

text: wild type

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

text: ES_H3K4me2 [ChIP-Seq]


text: live

text: Generic

text: Embryonic Stem Cells (ESCs)

text: wild type

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

text: ES_JNK13_biological_replicate_a [ChIP-Seq]


text: live

text: Generic

text: Embryonic Stem Cells (ESCs)

text: wild type

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

text: ES_JNK13_biological_replicate_b [ChIP-Seq]


text: live

text: Generic

text: Embryonic Stem Cells (ESCs)

text: anti-NFYA

text: wild type

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

text: ES_NFYA_biological_replicate_a [ChIP-Seq]


text: live

text: Generic

text: Embryonic Stem Cells (ESCs)

text: anti-NFYA

text: wild type

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

text: ES_NFYA_biological_replicate_b [ChIP-Seq]


text: live

text: Generic

text: Embryonic Stem Cells (ESCs)

text: anti-RNA Pol II

text: wild type

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

text: ES_PolII [ChIP-Seq]


text: live

text: Generic

text: Embryonic Stem Cells (ESCs)

text: none (input)

text: wild type

text: Mus musculus

text: Embryonic Stem Cells (ESCs)

text: Input [ChIP-Seq]


text: live

text: Generic

text: Neuronal Progenitors (NP)

text: wild type

text: Mus musculus

text: Neuronal Progenitor (NP) Cells

text: NP_H3K27me3_technical_replicate_a1 [ChIP-Seq]


text: live

text: Generic

text: Neuronal Progenitors (NP)

text: wild type

text: Mus musculus

text: Neuronal Progenitor (NP) Cells

text: NP_H3K27me3_technical _replicate_a2 [ChIP-Seq]


text: live

text: Generic

text: Neuronal Progenitors (NP)

text: wild type

text: Mus musculus

text: Neuronal Progenitor (NP) Cells

text: NP_H3K27me3_biological_replicate_b1 [ChIP-Seq]


text: live

text: Generic

text: Neuronal Progenitors (NP)

text: wild type

text: Mus musculus

text: Neuronal Progenitor (NP) Cells

text: NP_H3K4me2 [ChIP-Seq]


text: live

text: Generic

text: Neuronal Progenitors (NP)

text: wild type

text: Mus musculus

text: Neuronal Progenitor (NP) Cells

text: NP_JNK13_biological_replicate_a [ChIP-Seq]


text: live

text: Generic

text: Neuronal Progenitors (NP)

text: wild type

text: Mus musculus

text: Neuronal Progenitor (NP) Cells

text: NP_JNK13_biological_replicate_b [ChIP-Seq]


text: live

text: Generic

text: Neuronal Progenitors (NP)

text: anti-NFYA

text: wild type

text: Mus musculus

text: Neuronal Progenitor (NP) Cells

text: NP_NFYA_biological_replicate_a [ChIP-Seq]


text: live

text: Generic

text: Neuronal Progenitors (NP)

text: anti-NFYA

text: wild type

text: Mus musculus

text: Neuronal Progenitor (NP) Cells

text: NP_NFYA_biological_replicate_b [ChIP-Seq]


text: live

text: Generic

text: Neuronal Progenitors (NP)

text: anti-RNA Pol II

text: wild type

text: Mus musculus

text: Neuronal Progenitor (NP) Cells

text: NP_PolII [ChIP-Seq]


text: live

text: Generic

text: Terminally differentiated Neurons (TN)

text: wild type

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: TN_H3K27me3_technical_replicate_a1 [ChIP-Seq]


text: live

text: Generic

text: Terminally differentiated Neurons (TN)

text: wild type

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: TN_H3K27me3_technical _replicate_a2 [ChIP-Seq]


text: Friedrich Miescher Institute for Biomedical Research

text: live

text: Generic

text: Terminally differentiated Neurons (TN)

text: wild type

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: TN_H3K27me3_biological_replicate_b1 [ChIP-Seq]


text: live

text: Generic

text: Terminally differentiated Neurons (TN)

text: wild type

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: TN_H3K4me2 [ChIP-Seq]


text: live

text: Generic

text: Terminally differentiated Neurons (TN)

text: wild type

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: TN_JNK13_biological_replicate_a [ChIP-Seq]


text: live

text: Generic

text: Terminally differentiated Neurons (TN)

text: wild type

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: TN_JNK13_biological_replicate_b [ChIP-Seq]


text: live

text: Generic

text: Terminally differentiated Neurons (TN)

text: anti-NFYA

text: wild type

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: TN_NFYA_biological_replicate_a [ChIP-Seq]


text: live

text: Generic

text: Terminally differentiated Neurons (TN)

text: anti-NFYA

text: wild type

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: TN_NFYA_biological_replicate_b [ChIP-Seq]


text: live

text: Generic

text: Terminally differentiated Neurons (TN)

text: anti-RNA Pol II

text: wild type

text: Mus musculus

text: Terminally differentiated Neurons (TN)

text: TN_PolII [ChIP-Seq]


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.0.0-Eclipse

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Aerococcus viridans strain ATCC 11563

characteristic: description

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft37.6x;150

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Aerococcus viridans ATCC 11563 = CCUG 4311

text: Aerococcus viridans ATCC 11563

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: ATCC 11563, NCTC 8251, DSM 20340

text: Homo sapiens

characteristic: specific host

text: ATCC 11563

text: MIGS Cultured Bacterial/Archaeal sample from Aerococcus viridans ATCC 11563


characteristic: External Id

text: Pacific Biosciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Samples of spontaneously passed stool from two patients who had received a clinical diagnosis of cholera were cultured. Both patients received standard medical treatment for cholera, as appropriate to their clinical conditions. Bacterial isolates (H1 and H2) were shipped to the United States, with the use of an import license for this purpose (2010-10-108) that was provided through the Centers for Disease Control and Prevention (CDC). Isolates were identified as V. cholerae and were determined to be susceptible to tetracycline and erythromycin but resistant to trimethoprim-sulfamethoxazole and nalidixic acid.

text: Vibrio cholerae O1 biovar El Tor

characteristic: organism

characteristic: serotype

text: H1 (Haiti, 2010)

characteristic: title


text: Pacific Biosciences

text: live

text: Generic

characteristic: description

text: Vibrio cholerae O1 biovar El Tor

text: H2 (Haiti, 2010)


text: Pacific Biosciences

text: live

text: Generic

text: Clinical isolate, strain MDC126, from 2008 cholera outbreak in Bangladesh. Cultured on thiosulfate-citrate-bile-sucrose (TCBS) agar, and subsequently subcultured and stabbed in Amies clear transport medium.

text: Vibrio cholerae O1 biovar El Tor

text: M4 (Bangladesh, 2008)


text: Pacific Biosciences

text: live

text: Generic

text: El Tor

characteristic: biovar

text: Clinical isolate, strain N16961, from 1971 cholera outbreak in Bangladesh. Cultured on thiosulfate-citrate-bile-sucrose (TCBS) agar, and subsequently subcultured and stabbed in Amies clear transport medium.

characteristic: strain

text: N5 : Vibrio cholerae O1 biovar El Tor str. N16961; (Bangladesh, 1971)


text: Pacific Biosciences

text: live

text: Generic

text: Clinical isolate, strain C6706, from 1991 cholera outbreak in Peru. Cultured on thiosulfate-citrate-bile-sucrose (TCBS) agar, and subsequently subcultured and stabbed in Amies clear transport medium.

text: Vibrio cholerae O1

text: C6 (Peru, 1991)


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 1.1.03.24

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Granulicatella adiacens strain ATCC 49175

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft34.79x;31

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Granulicatella adiacens ATCC 49175

text: Granulicatella adiacens ATCC 49175

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: ATCC 49175, CIP 103243, DSM 9848

text: Homo sapiens

text: ATCC 49175

text: MIGS Cultured Bacterial/Archaeal sample from Granulicatella adiacens ATCC 49175


characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: human metagenome

characteristic: organism

characteristic: sample name

text: Generic sample from human metagenome

characteristic: title


text: Medical Systems Biology (Prof. Buchholz), UCC / Medical Faculty and University Hospital Carl Gustav Carus, Technische Universität Dresden

text: live

text: Generic

text: R1/E ESC

characteristic: cell type

text: goat-anti-eGFP, raised against His-tagged full-length eGFP and affinity-purified with GST-tagged full-length eGFP

characteristic: chip antibody

text: generated by the Antibody and Protein purification facility of MPI-CBG

characteristic: chip antibody manufacturer

text: Mus musculus

text: ESC

text: ESC CTCF-GFP ChIP


text: live

text: Generic

text: R1/E ESC

text: Goat IgG isotype control

text: Jackson Immunoresearch

text: Mus musculus

text: ESC

text: ESC CTCF-GFP IgG


brown

text: live

text: Generic

text: Genomic DNA was extracted from 30 *l of blood from 25 unrelated F0 individuals from brown egg layers using a Puregene DNA isolation kit (D-70KA; Gentra Systems, Inc., USA). The RRLs were prepared by digesting 25 *g of pooled DNA using 1,000 units of the restriction enzyme AluI in a total volume of 240 *l. The selection of the restriction enzyme was based on the 10-fold reduction of genome complexity in the optimum size range (100-200 bp) of the sequencing technology platform (Genome Analyzer, Illumina). The digested DNA sample was fractionated on a 10% precast polyacrylamide gel (Biorad) at 100 V for 3 h and stained with ethidium bromide. The size fractions were sliced out of the gel and the DNA was mechanically sheared and and eluted over night in 300 *l recovery buffer (8 mM Tris pH 8.0, 0.08 mM EDTA, 1.25 M ammonium acetate. After a 15-min incubation at 65*C, the eluent was purified using a Montage DNA Gel Extraction Device (Millipore Corporation, Bedford, MA) and precipitated with isopropanol. The DNA was washed with ethanol and re-suspended in DNA hydration solution (Gentra Systems, Inc., USA).

characteristic: description

text: Gallus gallus

text: brown egg layer


white

text: live

text: Generic

text: Genomic DNA was extracted from 30 *l of blood from 25 unrelated F0 individuals from white egg layer lines using a Puregene DNA isolation kit (D-70KA; Gentra Systems, Inc., USA). The RRLs were prepared by digesting 25 *g of pooled DNA using 1,000 units of the restriction enzyme AluI in a total volume of 240 *l. The selection of the restriction enzyme was based on the 10-fold reduction of genome complexity in the optimum size range (150-200 bp) of the sequencing technology platform (Genome Analyzer, Illumina). The digested DNA sample was fractionated on a 10% precast polyacrylamide gel (Biorad) at 100 V for 3 h and stained with ethidium bromide. The size fractions were sliced out of the gel and the DNA was mechanically sheared and and eluted over night in 300 *l recovery buffer (8 mM Tris pH 8.0, 0.08 mM EDTA, 1.25 M ammonium acetate. After a 15-min incubation at 65*C, the eluent was purified using a Montage DNA Gel Extraction Device (Millipore Corporation, Bedford, MA) and precipitated with isopropanol. The DNA was washed with ethanol and re-suspended in DNA hydration solution (Gentra Systems, Inc., USA).

text: Gallus gallus

text: white egg layer


Thellungiella parvula

text: University of Illinois

text: live

text: Generic

text: Eutrema parvulum, also called Thellungiella parvula, is one of several extremophile relatives of Arabidopsis, is notable for its tolerance to high salinity, freezing temperatures, water deficit and resource-poor environments. Under saline conditions, for example, its LD50 in NaCl is 600 mM for mature plants; below that, while Na gradually accumulates, K levels are maintained. With a small nuclear genome of ~140Mb in 7 chromosomes (N), Eutrema parvulum represents an extremophile model species.

text: Schrenkiella parvula

text: Thellungiella parvula


text: Genetics and Genome Sciences, University of Connecticut Health Center

text: live

text: Generic

characteristic: cell line

text: Drosophila melanogaster


characteristic: External Id

text: Cancer Biology, City of Hope

text: live

text: Generic

text: rabbit anti-HMGN1

characteristic: antibody

text: CD4+ T cells

text: Homo sapiens

text: CD4+ T cells, HMGN1 ChIP


text: Cancer Biology, City of Hope

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: rabbit anti-YY1 polyclonal

text: Abcam

characteristic: antibody vendor

text: CD4+ T cells

text: Homo sapiens

text: CD4+ T cells, YY1 ChIP


text: Cancer Biology, City of Hope

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: normal rabbit IgG

text: Santa Cruz

text: CD4+ T cells

text: Homo sapiens

text: CD4+ T cells, control ChIP

text: IgG


text: Baylor College of Medicine

text: live

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0-01162009

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Corynebacterium accolens strain ATCC 49726

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft13.3x;165

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Nasal

characteristic: misc_param: HMP body site

text: airways

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Corynebacterium accolens ATCC 49726

text: Corynebacterium accolens ATCC 49726

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: ATCC 49726, CCUG 28780, CNCTC 6805 , CNCTC Th 4/63

text: Homo sapiens

characteristic: specific host

text: ATCC 49726

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium accolens


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.0-Eclipse

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Lactobacillus helveticus strain DSM 20075

characteristic: description

text: Level 2: High-Quality Draft33x;235

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Lactobacillus helveticus DSM 20075 = CGMCC 1.1877

characteristic: organism

text: Lactobacillus helveticus DSM 20075

text: Reference Genome

text: not determined

text: DSM 20075, ATCC 15009

text: Homo sapiens

text: DSM 20075

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus helveticus DSM 20075

characteristic: title


ES

text: LNCC

text: live

text: Generic

text: metagenome

text: Esponja


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.0-011609

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: culture-collection

text: Lactobacillus iners strain DSM 13335

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft55.49x;22

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Urinary tract

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Lactobacillus iners DSM 13335

text: Lactobacillus iners DSM 13335

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: DSM 13335, CCUG 28746, CIP 105923, LMG 18914

text: Homo sapiens

characteristic: specific host

text: DSM 13335

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus iners DSM 13335


SC

characteristic: External Id

text: LNCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: The area when the soil samples were colleted is called Caatinga, which is a typical Brazilian biome in the semiarid Northeastern region. The climate is Bsh in Koppen’s classification (hot, with summer rains), with annual temperature of 23.1C and 27.2C, minimum and maximum means, respectively and mean annual precipitation of 400 mm. In Gaussen’s xerothermic classification the bioclimate is 2b, with predominance of dry months (from 9 to 11 months).

characteristic: description

text: soil metagenome

characteristic: organism

text: Solo Cariri


text: Baylor College of Medicine

text: live

text: Generic

characteristic: culture-collection

text: Staphylococcus aureus strain ATCC 51811

text: Staphylococcus aureus subsp. aureus ATCC 51811

text: ATCC 51811

characteristic: strain

text: aureus

characteristic: sub species

text: Generic sample from Staphylococcus aureus subsp. aureus

characteristic: title


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 2.0.0-Eclipse

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Staphylococcus epidermidis strain M23590

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft26.3x;25

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: skin

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: skin

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Staphylococcus lugdunensis M23590

text: Staphylococcus lugdunensis M23590

characteristic: project name

text: Reference Genome

text: not determined

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-141

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Staphylococcus lugdunensis M23590


characteristic: External Id

text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Miscanthus giganteus

characteristic: description

text: Miscanthus x giganteus

characteristic: organism

characteristic: sample number

text: Generic sample from Miscanthus x giganteus

characteristic: title


text: live

text: Generic

text: Escherichia coli K-12

characteristic: strain

text: Generic sample from Escherichia coli str. K-12 substr. MG1655


text: live

text: Generic

text: Escherichia coli K-12

text: Escherichia coli str. K-12 substr. MG1655


text: live

text: Generic

text: LMG P-21439

text: Generic sample from Desulfitobacterium dichloroeliminans LMG P-21439


text: live

text: Generic

text: Chlamydomonas reinhardtii

text: Chlamydomonas reinhardtii

text: Generic sample from Chlamydomonas reinhardtii


text: live

text: Generic

text: Thermonema lapsum 23/9

text: Thermonema lapsum 23/9

text: Generic sample from Thermonema lapsum 23/9


text: live

text: Generic

text: 7 days old

characteristic: age

text: protonemata

text: Ceratodon purpureus GG1 standard protonemata

text: Grown on BCDA medium, long day (16 hours) light condition, 25C

characteristic: in vivo conditions

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Ceratodon purpureus

text: female

characteristic: sex

text: Generic sample from Ceratodon purpureus


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Protonema

text: Ceratodon purpureus GG1 hormone treated

text: 7 days old

text: Treatments with NAA 1 microM, BAP 1 microM, JA 5 microM, SA 5 microM for 1,3 and 24 hours. Heat shock (37C), Cold shock (6C) for 1,2,6 hours

text: standard

text: standard

text: Ceratodon purpureus

text: female

text: Generic sample from Ceratodon purpureus


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Protonema

text: Ceratodon purpureus GG1 ABA treated

text: 7 days old

text: ABA 50 microM for 0.5,1,1.5,3,6,12,24,48 hours; ABA 50 microM for 1 hour then release of treatment for 0.5,2,5,11,23,47 hours

text: standard

text: standard

text: Ceratodon purpureus

text: female

text: Generic sample from Ceratodon purpureus


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: protonemata

text: Ceratodon purpureus R40 standard protonemata

text: 7 days old

text: standard

text: standard

text: Ceratodon purpureus

text: male

text: Generic sample from Ceratodon purpureus


text: live

text: Generic

text: Protonema

text: Ceratodon purpureus R40 hormone treated

characteristic: description

text: 7 days old

text: standard

text: standard

text: Ceratodon purpureus

characteristic: organism

text: male

text: Generic sample from Ceratodon purpureus


text: live

text: Generic

text: Protonema

text: Ceratodon purpureus R40 ABA treated

text: 7 days old

text: standard

text: standard

text: Ceratodon purpureus

text: male

characteristic: strain

text: Generic sample from Ceratodon purpureus

characteristic: title


Solanum pimpinellifolium

text: CSHL

text: live

text: Generic

text: S. pimpinellifolium whole genome Illumina sequence data

text: Solanum pimpinellifolium

text: S. pimpinellifolium whole genome sequence


broiler 1

text: live

text: Generic

text: Genomic DNA was extracted from 30 *l of blood from 13 males and 12 females using a Puregene DNA isolation kit (D-70KA; Gentra Systems, Inc., USA). The RRLs were prepared by digesting 25 *g of pooled DNA using 1,000 units of the restriction enzyme AluI in a total volume of 240 *l. The selection of the restriction enzyme was based on the 10-fold reduction of genome complexity in the optimum size range (125-200 bp) of the sequencing technology platform (Genome Analyzer, Illumina). The digested DNA sample was fractionated on a 10% precast polyacrylamide gel (Biorad) at 100 V for 3 h and stained with ethidium bromide. The size fractions were sliced out of the gel and the DNA was mechanically sheared and and eluted over night in 300 *l recovery buffer (8 mM Tris pH 8.0, 0.08 mM EDTA, 1.25 M ammonium acetate. After a 15-min incubation at 65*C, the eluent was purified using a Montage DNA Gel Extraction Device (Millipore Corporation, Bedford, MA) and precipitated with isopropanol. The DNA was washed with ethanol and re-suspended in DNA hydration solution (Gentra Systems, Inc., USA).

text: Gallus gallus

text: broiler 1


broiler 2

text: live

text: Generic

text: Genomic DNA was extracted from 30 *l of blood from 25 males using a Puregene DNA isolation kit (D-70KA; Gentra Systems, Inc., USA). The RRLs were prepared by digesting 25 *g of pooled DNA using 1,000 units of the restriction enzyme AluI in a total volume of 240 *l. The selection of the restriction enzyme was based on the 10-fold reduction of genome complexity in the optimum size range (125-200 bp) of the sequencing technology platform (Genome Analyzer, Illumina). The digested DNA sample was fractionated on a 10% precast polyacrylamide gel (Biorad) at 100 V for 3 h and stained with ethidium bromide. The size fractions were sliced out of the gel and the DNA was mechanically sheared and and eluted over night in 300 *l recovery buffer (8 mM Tris pH 8.0, 0.08 mM EDTA, 1.25 M ammonium acetate. After a 15-min incubation at 65*C, the eluent was purified using a Montage DNA Gel Extraction Device (Millipore Corporation, Bedford, MA) and precipitated with isopropanol. The DNA was washed with ethanol and re-suspended in DNA hydration solution (Gentra Systems, Inc., USA).

text: Gallus gallus

text: broiler 2


Tttrout

text: INRA

text: live

text: Generic

text: Testes were collected from maturing animals and stored in liquid nitrogen. Total RNA was extracted using the Trizol reagent (Invitrogen, Cergy-Pontoise, France) according to the manufacturer's instructions. Total RNA yield was estimated by using a Nanodrop 1000 spectrophotometer (Labtech, Palaiseau, France) and RNA quality was checked with an Agilent Bioanalyzer (Agilent Technologies, Massy, France). Only good quality total RNA (RNA Integrity Number (RIN)&gt;8) were selected. Total RNA from several extractions were pooled to minimize the impact of biological variance and to have a large quantity necessary to the library preparation. mRNA were then isolated from 250µg of total RNA using the Nucleotrap® mRNA kit (Macherey-Nagel, Hoerdt, France) as described in the manufacturer's manual, except for the elution procedure (40µl prewarmed (68°C) H2O for 40µl Oligo(dT) latex beads used, 3 rounds of elution). Quality of mRNA and depletion in ribosomal RNA were checked with the Agilent Bioanalyzer (Agilent Technologies, Massy, France). Different isolations of mRNA were made per sample, pooled and then ethanol precipitated overnight (2 vol of cold absolute ETOH, 1/10 vol of 3M pH5.2 Sodium Acetate and 20µg of glycogen). Double stranded cDNA were prepared as described by Leroux et al. [2010] using a modified protocol of the SuperScript Double-Stranded cDNA Synthesis Kit (Invitrogen, Cergy-Pontoise, France). Briefly, a modified primer (5' GAGAGAGAGACTGGAG(T)16VN 3') containing the GsuI restriction site and methylated dCTP (10mM dm5CTP, Fermentas, Saint-Remy-les-Chevreuse, France) were used during the first strand cDNA synthesis. First strand was synthesized from 3µg of mRNA. Next steps (second strand synthesis, RNase I digestion, phenol/chloroform extraction and ethanol precipitation) were proceeded according to the manufacturer's instructions. Pellets were resuspended in 9µl of water. 4 independent synthesis were made for each sample and pooled in order to obtain a total of 4.4 µg. Then, the double-stranded cDNA was digested by GsuI (5U) to remove the polyA tail for 90min at 30°C. cDNAs was quantified using Quant-iT PicoGreen kit (Invitrogen, Cergy-Pontoise, France).

text: Oncorhynchus mykiss

text: Non-normalized cDNA from Oncorhynchus mykiss stage I testis


text: INRA

text: live

text: Generic

text: Testes were collected from maturing animals and stored in liquid nitrogen. Total RNA was extracted using the Trizol reagent (Invitrogen, Cergy-Pontoise, France) according to the manufacturer's instructions. Total RNA yield was estimated by using a Nanodrop 1000 spectrophotometer (Labtech, Palaiseau, France) and RNA quality was checked with an Agilent Bioanalyzer (Agilent Technologies, Massy, France). Only good quality total RNA (RNA Integrity Number (RIN)&gt;8) were selected. Total RNA from several extractions were pooled to minimize the impact of biological variance and to have a large quantity necessary to the library preparation. mRNA were then isolated from 250µg of total RNA using the Nucleotrap® mRNA kit (Macherey-Nagel, Hoerdt, France) as described in the manufacturer's manual, except for the elution procedure (40µl prewarmed (68°C) H2O for 40µl Oligo(dT) latex beads used, 3 rounds of elution). Quality of mRNA and depletion in ribosomal RNA were checked with the Agilent Bioanalyzer (Agilent Technologies, Massy, France). Different isolations of mRNA were made per sample, pooled and then ethanol precipitated overnight (2 vol of cold absolute ETOH, 1/10 vol of 3M pH5.2 Sodium Acetate and 20µg of glycogen). Double stranded cDNA were prepared as described by Leroux et al. [2010] using a modified protocol of the SuperScript Double-Stranded cDNA Synthesis Kit (Invitrogen, Cergy-Pontoise, France). Briefly, a modified primer (5' GAGAGAGAGACTGGAG(T)16VN 3') containing the GsuI restriction site and methylated dCTP (10mM dm5CTP, Fermentas, Saint-Remy-les-Chevreuse, France) were used during the first strand cDNA synthesis. First strand was synthesized from 3µg of mRNA. Next steps (second strand synthesis, RNase I digestion, phenol/chloroform extraction and ethanol precipitation) were proceeded according to the manufacturer's instructions. Pellets were resuspended in 9µl of water. 3 independent synthesis were made for each sample and pooled in order to obtain a total of 4.4 µg. Then, the double-stranded cDNA was digested by GsuI (5U) to remove the polyA tail for 90min at 30°C. cDNAs was quantified using Quant-iT PicoGreen kit (Invitrogen, Cergy-Pontoise, France).

text: Oncorhynchus mykiss

text: Non-normalized cDNA from Oncorhynchus mykiss stage III testis


Tttrout_MOF brain

text: INRA

text: live

text: Generic

text: 100 MOF (monosex females) of 47 daf (days after fertilization) rainbow trouts were anesthetized in ice. Brains were rapidly removed and immediately frozen in liquid nitrogen, then stored at -80°C. Total RNA was extracted using TRizol (Invitrogen, Cergy-Pontoise, France) according to the manufacturer's instructions. Total RNA yield was estimated by using a Nanodrop 1000 spectrophotometer (Labtech, Palaiseau, France) and RNA quality was checked with an Agilent Bioanalyzer (Agilent Technologies, Massy, France). Only good quality total RNA (RNA Integrity Number (RIN)&gt;8) were selected. Total RNA from several extractions were pooled to minimize the impact of biological variance and to have a large quantity necessary to the library preparation. mRNA were then isolated from 250µg of total RNA using the Nucleotrap® mRNA kit (Macherey-Nagel, Hoerdt, France) as described in the manufacturer's manual, except for the elution procedure (40µl prewarmed (68°C) H2O for 40µl Oligo(dT) latex beads used, 3 rounds of elution). Quality of mRNA and depletion in ribosomal RNA were checked with the Agilent Bioanalyzer (Agilent Technologies, Massy, France). Different isolations of mRNA were made per sample, pooled and then ethanol precipitated overnight (2 vol of cold absolute ETOH, 1/10 vol of 3M pH5.2 Sodium Acetate and 20µg of glycogen). Double stranded cDNA were prepared as described by Leroux et al. [2010] using a modified protocol of the SuperScript Double-Stranded cDNA Synthesis Kit (Invitrogen, Cergy-Pontoise, France). Briefly, a modified primer (5' GAGAGAGAGACTGGAG(T)16VN 3') containing the GsuI restriction site and methylated dCTP (10mM dm5CTP, Fermentas, Saint-Remy-les-Chevreuse, France) were used during the first strand cDNA synthesis. First strand was synthesized from 3µg of mRNA. Next steps (second strand synthesis, RNase I digestion, phenol/chloroform extraction and ethanol precipitation) were proceeded according to the manufacturer's instructions. Pellets were resuspended in 9µl of water. 3 to 5 independent synthesis were made for each sample and pooled in order to obtain a total of 6.4µg. Then, the double-stranded cDNA was digested by GsuI (5U) to remove the polyA tail for 90min at 30°C. cDNAs were quantified using Quant-iT PicoGreen kit (Invitrogen, Cergy-Pontoise, France).

text: Oncorhynchus mykiss

text: Non-normalised cDNA from Oncorhynchus mykiss MOF brain


Sordaria macrospora pro23/fus

text: Ruhr-University Bochum

text: live

text: Generic

text: Sordaria macrospora

text: Sordaria macrospora pro23/fus


Sordaria macrospora pro44/fus

text: Ruhr-University Bochum

text: live

text: Generic

text: Sordaria macrospora

text: Sordaria macrospora fus (=pro44/fus)


Sordaria macrospora wild type

text: Ruhr-University Bochum

text: live

text: Generic

text: Sordaria macrospora

text: Sordaria macrospora wild type


text: Institute for Diabetes, Obesity, and Metabolism, University of Pennsylvania

text: live

text: Generic

text: Dr. Jeffrey Whitsett

characteristic: antibody provider

text: Gene Expr Patterns. 2004 Dec;5(2):193-208. Immunohistochemical localization of Foxa1 and Foxa2 in mouse embryos and adult tissues. Besnard V, Wert SE, Hull WM, Whitsett JA.

characteristic: antibody reference

text: Liver tissue

characteristic: cell type

characteristic: chip antibody

text: Homo sapiens

text: Homogenized Human Liver

text: Human_Liver_FOXA2_rep1 (GAI)


characteristic: External Id

text: live

text: Generic

text: Dr. Jeffrey Whitsett

text: Liver tissue

text: Homo sapiens

text: Homogenized Human Liver

text: Human_Liver_FOXA2_rep1 (GAII)


characteristic: INSDC center name

text: live

text: Generic

text: Dr. Jeffrey Whitsett

text: Liver tissue

text: Homo sapiens

text: Homogenized Human Liver

text: Human_Liver_FOXA2_rep2 (GAI)


characteristic: INSDC first public

text: live

text: Generic

text: Dr. Jeffrey Whitsett

text: Liver tissue

text: Homo sapiens

text: Homogenized Human Liver

text: Human_Liver_FOXA2_rep2 (GAII)


characteristic: INSDC last update

text: live

text: Generic

text: Liver tissue

text: Homo sapiens

text: Homogenized Human Liver

text: Human_Liver_Input_rep1 (GAI)


characteristic: INSDC secondary accession

text: live

text: Generic

text: Liver tissue

text: Homo sapiens

text: Homogenized Human Liver

text: Human_Liver_Input_rep1 (GAII)


text: live

characteristic: INSDC status

text: Generic

text: Liver tissue

text: Homo sapiens

text: Homogenized Human Liver

text: Human_Liver_Input_rep2 (GAI)


text: live

text: Generic

characteristic: NCBI submission model

text: Dr. Jeffrey Whitsett

text: Liver tissue

text: Mus musculus

text: Homogenized Mouse Liver

text: Mouse_Liver_FOXA2_rep1 (GAI)


text: live

text: Generic

characteristic: NCBI submission package

text: Dr. Jeffrey Whitsett

text: Liver tissue

text: Mus musculus

text: Homogenized Mouse Liver

text: Mouse_Liver_FOXA2_rep2 (GAI)


text: live

text: Generic

characteristic: SRA accession

text: Dr. Jeffrey Whitsett

text: Liver tissue

text: Mus musculus

text: Homogenized Mouse Liver

text: Mouse_Liver_FOXA2_rep3 (GAI)


text: live

text: Generic

text: Dr. Jeffrey Whitsett

text: Liver tissue

text: Mus musculus

text: Homogenized Mouse Liver

text: Mouse_Liver_FOXA2_rep3 (GAII)