text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse spleen

text: RenLab-H3K4me1-spleen (Illumina GA IIx)


status: PUBLIC

characteristic: External Id

text: Laboratory of Gene Regulation, Ludwig Institute for Cancer Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: chip antibody

text: Millipore, 05-745

characteristic: chip antibody details

text: Mus musculus

characteristic: organism

text: Mouse spleen

characteristic: strain

text: RenLab-H3K4me3-spleen (Illumina GA IIx)

characteristic: title


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Mouse spleen


text: live

text: Generic

text: none (Input)

text: Mus musculus

text: Mouse spleen

text: RenLab-Input-spleen (Illumina GA IIx)


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse spleen

text: RenLab-H3K4me1-spleen (Illumina HiSeq 2000)


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Mouse spleen

text: RenLab-H3K4me3-spleen (Illumina HiSeq 2000)


text: live

text: Generic

text: none (Input)

text: Mus musculus

text: Mouse spleen

text: RenLab-Input-spleen (Illumina HiSeq 2000)


text: live

text: Generic

text: CTCF

text: Kim et al., 2007

text: Mus musculus

text: Mouse embryonic fibroblast

text: RenLab-CTCF-MEF


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Mouse embryonic fibroblast


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Mouse embryonic fibroblast


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Mouse embryonic fibroblast


text: live

text: Generic

text: none (Input)

text: Mus musculus

text: Mouse embryonic fibroblast

text: RenLab-Input-MEF


text: live

text: Generic

text: CTCF

text: Kim et al., 2007

text: Mus musculus

text: Bruce4 embryonic stem cells

text: RenLab-CTCF-mESC


text: live

text: Generic

text: Abcam, ab8895

text: Mus musculus

text: Bruce4 embryonic stem cells


text: live

text: Generic

text: Millipore, 05-745

text: Mus musculus

text: Bruce4 embryonic stem cells


text: live

text: Generic

text: Santa Cruz, sc585

text: Mus musculus

text: Bruce4 embryonic stem cells


text: live

text: Generic

text: Canvance, MMS-126R

text: Mus musculus

text: Bruce4 embryonic stem cells


text: live

text: Generic

text: none (Input)

text: Mus musculus

text: Bruce4 embryonic stem cells

text: RenLab-Input-mESC


text: live

text: Generic

text: Mus musculus

text: Mouse bone marrow

text: RenLab-RNA-Seq-bone-marrow


text: live

text: Generic

text: Mus musculus

text: Mouse cerebellum

text: RenLab-RNA-Seq-cerebellum


text: live

text: Generic

text: Mus musculus

text: Mouse cortex

text: RenLab-RNA-Seq-cortex


text: live

text: Generic

text: Mus musculus

text: Mouse heart

text: RenLab-RNA-Seq-heart


text: live

text: Generic

text: Mus musculus

text: Mouse kidney

text: RenLab-RNA-Seq-kidney


text: live

text: Generic

text: Mus musculus

text: Mouse liver

text: RenLab-RNA-Seq-liver


text: live

text: Generic

text: Mus musculus

text: Mouse lung

text: RenLab-RNA-Seq-lung


text: live

text: Generic

text: Mus musculus

text: Mouse spleen

text: RenLab-RNA-Seq-spleen


text: live

text: Generic

text: Mus musculus

text: Mouse embryonic fibroblast

text: RenLab-RNA-Seq-MEF


text: live

text: Generic

text: Mus musculus

text: Bruce4 embryonic stem cells

text: RenLab-RNA-Seq-mESC


text: Sandelin, Dep. of Biology, University of Copenhagen

text: live

text: Generic

text: Homo sapiens

text: HeLa S2


text: live

text: Generic

text: Homo sapiens

text: control

characteristic: sirna treatment

text: HeLa S2


text: live

text: Generic

text: Homo sapiens

text: HeLa S2


text: live

text: Generic

characteristic: immunoprecipitation

text: Homo sapiens

text: control

text: HeLa S2


text: live

text: Generic

text: Homo sapiens

text: HeLa S2


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Capsella rubella

characteristic: description

text: Capsella rubella

text: Mte. Gargano (Italy)

text: Sample from Capsella rubella


Bt San Fernando

characteristic: External Id

text: Spanish National Center for Biotechnology - CSIC

text: live

text: Generic

text: Rhizobacterial communities on the rhizosphere of Bt maize compare with its isogenic non-genetically modified line

text: uncultured bacterium


wt

text: Yale university

characteristic: INSDC center name

text: live

text: Generic

text: Escherichia coli str. K-12 substr. MG1655

characteristic: substrain

text: wild-type E. coli K-12 MG1655


text: Washington University Center for Genome Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: USA

characteristic: country

text: Default sample for metagenomic projects from the Gordon Lab

text: human gut metagenome

text: Default Sample from the Gordon Lab


Sample 9918767

text: AgResearch Limited

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 454 sequencing of OVIS ARIES

text: Ovis aries

text: Sample of OVIS ARIES


text: Harvard University

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: equal proportion of each circadian time

characteristic: circadian time

text: Synechococcus elongatus PCC 7942 = FACHB-805

text: AMC 408

text: PCC 7942

text: RNA Sequencing Technical Replicate 1


text: Harvard University

text: live

text: Generic

text: equal proportion of each circadian time

characteristic: organism

text: AMC 408

text: PCC 7942

characteristic: strain

text: RNA Sequencing Technical Replicate 2


text: Harvard University

text: live

text: Generic

text: equal proportion of each circadian time

text: AMC 408

text: PCC 7942

text: RNA Sequencing Technical Replicate 3

characteristic: title


text: Harvard University

text: live

text: Generic

text: WP023 (Neoclone)

characteristic: chip antibody

text: circadian time 8 hours

text: AMC 408

text: PCC 7942

text: ChIP Sequening ZT 32


text: Harvard University

text: live

text: Generic

text: WP023 (Neoclone)

text: circadian time 8 hours

text: AMC 408

text: PCC 7942

text: ChIP Sequencing ZT 32 Input


text: Harvard University

text: live

text: Generic

text: WP023 (Neoclone)

text: circadian time 20 hours

text: AMC 408

text: PCC 7942

text: ChIP Sequencing ZT 44


text: Harvard University

text: live

text: Generic

text: WP023 (Neoclone)

text: circadian time 20 hours

text: AMC 408

text: PCC 7942

text: ChIP Sequencing ZT 44 Input


text: Harvard University

text: live

text: Generic

text: mouse whole IgG (Jackson ImmunoResearch)

text: equal mix of circadian times

text: AMC 408

text: PCC 7942

text: ChIP Sequencing Mock


text: Harvard University

text: live

text: Generic

text: equal mix of circadian times

text: AMC 408

text: PCC 7942

text: ChIP Sequencing Mock Input


text: Jason Lieb, Biology, University of North Carolina at Chapel Hill

text: live

text: Generic

text: dextrose

characteristic: carbon source

characteristic: od

text: Saccharomyces cerevisiae

text: 0 hours

characteristic: time point


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: dextrose

text: Saccharomyces cerevisiae

text: 3 hours


text: Uppsala University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Lyrurus tetrix

text: transcriptome sequencing of black grouse


text: Stanford University

characteristic: INSDC secondary accession

text: live

text: Generic

text: The sample was barcoded 3plex, the contents include: i) 2722A.D01 normal tissue with barcode 'TGCTAAT', ii) 2736A.D01 tumor tissue with barcode 'AGGTCAT' and iii) NA18507 from the Coriell Institute with barcode 'AACCTGT'

characteristic: description

text: Homo sapiens


text: Stanford University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Homo sapiens


text: Stanford University

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: NA18507 DNA from the Coriell Institute

text: Homo sapiens


text: Baylor College of Medicine

text: live

text: Generic

characteristic: cell line

text: Active Motif

characteristic: chip antibody vendor

text: female

characteristic: gender

characteristic: genotype/variation

text: Homo sapiens

characteristic: organism

text: blood

characteristic: tissue type


text: Baylor College of Medicine

text: live

text: Generic

text: female

text: Homo sapiens

text: blood

characteristic: title


characteristic: External Id

text: Baylor College of Medicine

text: live

text: Generic

characteristic: chip antibody

text: Active Motif

text: female

text: t(4;14)-associated NSD2 allele knocked-out

text: Homo sapiens

text: blood


text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: female

text: Homo sapiens

text: blood


text: Baylor College of Medicine

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Active Motif, Cat# 39167, Lot# 01609002

text: PHF20 knockout

text: perinatal lethality

characteristic: mutant phenotype

text: Mus musculus

text: E14.5 embryo head

text: 129 Sv

characteristic: strain

text: E14.5 embryo brain


text: Baylor College of Medicine

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Active Motif, Cat# 39167, Lot# 01609002

text: wild type

text: control

text: Mus musculus

text: E14.5 embryo head

text: 129 Sv

text: E14.5 embryo brain


T3 Rice

text: University of California, Davis - Comai Lab

text: live

text: Generic

characteristic: SRA accession

text: Oryza sativa

text: Rice TILLING


Hippocampus person 2

text: Roslin Institute, University of Edinburgh

text: live

text: Generic

text: Genomic DNA extracted from cadaveric human brain samples. Hippocampus, subject B.

characteristic: description

text: Homo sapiens

text: RC-seq: human brain


Caudate nucleus person 2

text: live

text: Generic

text: Genomic DNA extracted from cadaveric human brain samples. Caudate nucleus, subject B.

text: Homo sapiens

text: RC-seq: human brain


text: Institute of Oceanology, the Chinese Academy of Sciences (IOCAS)

text: live

text: Generic

text: log phase cells

characteristic: development stage

text: Phaeodactylum tricornutum

text: Phaeodactylum tricornutum cells

text: Bohlin

text: P. tricornutum_normal_48h

text: normal

characteristic: treatment


text: live

text: Generic

text: log phase cells

text: Phaeodactylum tricornutum

characteristic: organism

text: Phaeodactylum tricornutum cells

text: Bohlin

text: P. tricornutum_N-limited_48h

text: nitrogen-limited


text: live

text: Generic

text: log phase cells

text: Phaeodactylum tricornutum

text: Phaeodactylum tricornutum cells

text: Bohlin

text: P. tricornutum_Si-limited_48h

characteristic: title

text: silicon-limited


name: Microbiota in Korean alcoholic beverages

characteristic: External Id

text: Kyung Hee University

text: live

text: Generic

text: food metagenome

text: Unexpected convergence of fungal and bacterial communities during fermentation of traditional Korean alcoholic beverages inoculated with various natural starters


characteristic: Coriell panel

characteristic: DNA id

text: NCBI

text: live

text: Generic

text: Iberian populations in Spain

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

characteristic: culture collection

text: Human 1000 genomes individual HG02233

text: Homo sapiens

text: IBS

characteristic: population

text: trio

text: male

characteristic: sex

text: Coriell HG02233


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Iberian populations in Spain

text: EUR

text: European

text: Human 1000 genomes individual HG02232

text: Homo sapiens

text: IBS

text: trio

text: female

text: Coriell HG02232


text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Human 1000 genomes individual HG02234

characteristic: description

text: Homo sapiens

characteristic: organism

text: IBS

text: trio

text: male child

text: Human 1000 genomes individual HG02234


characteristic: External Id

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: cultivar

text: Manihot esculenta

text: Manihot esculenta

text: Generic sample from Manihot esculenta

characteristic: title


text: ONPRC

text: live

text: Generic

text: Prefrontal cortex tissue

text: Macaca mulatta

text: Chinese Rhesus, animal 1, for snp discovery


text: NICHD

text: live

text: Generic

text: Strain yMWB3-15 isolated as harboring sla1 RRM1 mutations at Y157A and F201A; Containing a suppressor tRNASer(UCA) with disruptive mutation C47:6U introduced in integrative plasmid pJK148 by Leu1 selection.

text: Schizosaccharomyces pombe

text: Pombe strain yMWB3-15 : Parent strain harboring mutant sla1 and mutant suppressor tRNA


text: NICHD

text: live

text: Generic

text: Spontanious revertant of yMWB3-15 suppression phenotpye. Harbors mutant sla1 RRM1 Y157A and F201A. Harbors two tandem copies of pJK148 integrated with tRNASer (UCA) C47:6U

text: Schizosaccharomyces pombe

text: Pombe strain yDA317 : Spontanious revertant of yMWB3-15 suppresson phenotype


text: NICHD

text: live

text: Generic

text: Pombe strain yMWB2-4 generated in parallel with yMWB3-15 harboring different known mutations

text: Schizosaccharomyces pombe


freshwater benthic macroinvertebrate

text: university of guelph

text: live

text: Generic

text: metagenomes

text: Pool of freshwater benthic macroinvertebrate species


text: Molecular Biology, Biology, Universidad Nacional de Colombia

text: live

text: Generic

text: Xanthomonas axonopodis. pv manihotis

characteristic: infection

text: Manihot esculenta

text: Leaves and stem tissues

text: Xam CIO151

characteristic: strain

text: 0 hours post inoculation -hpi, 6hpi, 24hpi, 2 days post-inoculation -dpi, 5dpi, 7dpi and 15dpi

characteristic: time post inoculation


text: live

text: Generic

text: control

text: Manihot esculenta

text: Leaves and stem tissues


text: National Center for Genome Resources

text: live

text: Generic

text: Staphylococcus aureus

text: Sample from Staphylococcus aureus


text: University of California - Davis, Drosophila Population Genomics Project

text: live

text: Generic

text: Sub-Saharan African population - Zambia (Siavonga). Haploid embryo.

text: Drosophila melanogaster


text: live

text: Generic

text: Sub-Saharan African population - Zambia (Siavonga). 5 generations of sib-sib inbreeding; haploid embryo.

text: Drosophila melanogaster


text: Buell Lab, Dept. of Plant Biology, Michigan State University

text: live

text: Generic

text: Salvia rosmarinus

text: leaf treated with meJA 72 hrs, 48hrs, and control


text: live

text: Generic

text: Salvia rosmarinus

text: leaf (Dancing_Water_74317*H)


text: live

text: Generic

text: Salvia rosmarinus

text: leaf (Israeli_Commercial_74309*J)


text: live

text: Generic

text: Salvia rosmarinus

text: leaf (Red-Flowered_74333*H)


text: live

text: Generic

text: Salvia rosmarinus

text: leaf (Barbeque_76170*H)


text: live

text: Generic

text: Salvia rosmarinus

text: leaf (Rexford_74319*H), mix of young & mature leaves


text: live

text: Generic

text: Salvia rosmarinus

text: leaf (Majorca_Collingwood_ingram_74316*H)


text: live

text: Generic

text: Salvia rosmarinus

text: mature leaf, fully expanded (wild_type_ROS20)


text: live

text: Generic

text: Salvia rosmarinus

text: secondary stem, entire (wild_type_ROS20)


text: live

text: Generic

text: Salvia rosmarinus

text: young leaf (<25% expanded) (wild_type_ROS20)


text: live

text: Generic

text: Salvia rosmarinus

text: entire root (wild_type_ROS20)


text: live

text: Generic

text: Salvia rosmarinus

text: leaf, 0.1% of MeJA 72 hours (wild_type_78786*H)


text: live

text: Generic

text: Salvia rosmarinus

text: leaf nontreated negative control for MeJA treatment, spayed with 0.1% Tween20 (wild_type_78786*H)


text: live

text: Generic

text: Salvia rosmarinus

text: leaf 0.1% of MeJA 48 hours (wild_type_78786*H)


text: live

text: Generic

text: Salvia rosmarinus

text: normalized library, young leaf (<25% expanded), entire root, mature leaf (fully expanded), secondary stem-entire


text: live

text: Generic

text: Salvia rosmarinus

text: callus


text: live

text: Generic

text: Salvia rosmarinus

text: mature flower (fully expanded)


ELBW Metagenome Infant 5

text: Duke University

text: live

text: Generic

text: Stool samples were collected from this infant at multiple time points. Total genomic DNA was isolated from the stool for sequencing.

text: Bacteria

text: ELBW Infant 5


text: USDA-ARS

text: live

text: Generic

text: Subtractive hybridization was performed with the PCR-Select cDNA Subtraction Kit (Clontech), according to the manufacture's protocol. Tester tissue consisted of the posterior kidney of fish 6 hours post injection of Aeromonas hydrophila. Driver tissue was the posterior kidney of tryptic soy broth injected control fish.

text: 8 months

characteristic: dev-stage

text: posterior kidney

characteristic: organ

text: Oreochromis niloticus

text: mixed

characteristic: sex

text: Auburn

text: Nile tilapia posterior kidney subtractive library 6h post infection of Aeromonas hydrophila

text: pGEM T easy (promega)

characteristic: vector


text: Zoologsches Forschungsmuseum Alexander Koenig

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Adult

text: Speleonectes cf. tulumensis BMR-2011

text: complete specimen

characteristic: tissue-type

text: Speleonectes cf. tulumensis dmp038 cDNA library


text: University of Manitoba

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Wheat plants (cv Sumai3) were grown under a 16 h light (20degC)/8 h dark (16degC) regime until mid-anthesis. Two florets after the ten basal spikelets were point-inoculated with 10 uL of a conidia suspension of Fusarium graminearum Fg2 (5-10 × 10^4 conidia/mL). Water inoculation was used as an experimental control on separate plants. The infected spikelets were harvested at 6, 12, 24, 36, 48, 72 and 144 h after inoculation. Total RNA was extracted and Poly(A+) RNA was purified. A subtraction suppression hybridization (SSH) library was generated with the PCR Select cDNA Subtraction Kit (Clontech, USA) according to the manufacturer's instructions by using cDNA from Fg2-inoculated spikelets as the tester, subtracted with water-inoculated cDNA as the driver. The enriched SSH PCR products were cloned into the pGEM T-Easy vector (Promega).

text: Anthesis at 6, 12, 24, 36, 48, 72, and 144 hours after inoculation with Fusarium graminearum Fg2

text: E. coli

characteristic: lab-host

text: Triticum aestivum

text: Whole spikelets at floral stage

text: SSH cDNA library from wheat spikes inoculated by Fusarium graminearum

text: Plasmid

text: pGEM-T Easy


characteristic: External Id

text: IPK-Gatersleben

text: live

text: Generic

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum isolated egg cells


text: Forestry and Forest Products Research Institute

text: live

text: Generic

text: seedling

text: Primula sieboldii

text: Primula sieboldii seedling cDNA library

characteristic: title


text: live

text: Generic

text: adults

text: Primula sieboldii

text: winter buds

text: Primula sieboldii winter buds cDNA library


text: International Center for Bamboo and Rattan

text: live

text: Generic

text: Ma bamboo

characteristic: cultivar

text: The preparation of library was according to the protocol provided by CreatorTM SMARTTM cDNA library construction kit, using SMARTTM cDNA synthesis by LD-PCR for obtaining enough cDNA (Protocol No.PT3577-1, Version No. PR651803). Vector was provided by producer and cut by Sfi I A and Sfi I B.

characteristic: description

text: Escherichia coli DH10B

text: leaf

text: Dendrocalamus latiflorus

text: Sfi I A (5' side of insert)

text: Sfi I B (3' side of insert)

text: Leaf of Dendrocalamus latiflorus (Ma bamboo)

text: Plasmid

text: pDNR-LIB


text: live

text: Generic

characteristic: collection-date

text: Sweden:West coast

characteristic: country

text: adult

characteristic: dev-stage

text: shore of Saltoe Island

characteristic: isolation-source

text: Littorina saxatilis

text: male

text: foot muscle

text: TMN


text: live

text: Generic

text: Sweden:West coast

text: adult

text: shore of Saltoe Island

text: Littorina saxatilis

text: male

characteristic: sex

text: foot muscle

text: TMU


text: University of Pennsylvania School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: Homo sapiens HIV integration targeting Library


text: NCI-Frederick

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: anti-histone 3 lysine 4 trimethylation (anti-H3K4me3) (Abcam)

characteristic: antibody

text: Mouse embryonic fibroblast

characteristic: cell type

text: Lsh+/+

characteristic: genotype/variation

text: Mus musculus

text: Lsh+/+ H3K4me3 sequence

text: Lsh+/+ H3K4me3


characteristic: External Id

text: NCI-Frederick

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mouse embryonic fibroblast

text: Lsh-/-

text: Mus musculus

characteristic: organism

text: Lsh-/- H3K4me3 sequence

text: Lsh-/- H3K4me3


text: Department of Molecular Biology (274), Radboud University

text: live

text: Generic

text: CBFb

characteristic: antibody catalog number

text: Diagenode

characteristic: antibody vendor

text: hematopoietic cell

text: leukemic

characteristic: disease state

text: Homo sapiens

text: SKNO-1 (leukemic)

text: SKNO-1_CBFb (A1329_Diagenode)_no

characteristic: title

text: no

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: antibody lot/batch number

text: Abcam

text: hematopoietic cell

text: leukemic

text: Homo sapiens

text: SKNO-1 (leukemic)

text: SKNO-1_RUNX1 (Abcam ab23980, Gr21798-1)_no

text: no


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: ERG

text: SantaCruz

text: hematopoietic cell

text: cancer

text: Homo sapiens

text: MCF7 (cancer)

text: no


text: live

text: Generic

text: AE (A706)

characteristic: antibody

text: n/a (commercialization pending manuscript publication)

text: hematopoietic cell

characteristic: cell type

text: cancer

text: Homo sapiens

text: MCF7 (cancer)

text: no


characteristic: External Id

text: live

characteristic: INSDC status

text: Generic

text: ERG

text: SantaCruz

text: hematopoietic cell

text: leukemic

text: Homo sapiens

text: K562 (leukemic)

text: no


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ERG

text: SantaCruz

text: hematopoietic cell

text: leukemic

text: Homo sapiens

text: K562 (leukemic)

text: K562-ERG_ERG(SantaCruz_sc353_C20)_72hrsdox

text: 72 hrs dox


text: live

text: Generic

text: AE (A706)

characteristic: antibody catalog number

text: hematopoietic cell

text: leukemic

text: Homo sapiens

characteristic: organism

text: K562 (leukemic)

text: no


text: live

text: Generic

text: AE (A706)

characteristic: antibody vendor

text: hematopoietic cell

text: leukemic

characteristic: disease state

text: Homo sapiens

text: K562 (leukemic)

text: 72 hrs dox


text: live

text: Generic

text: RNAPII

text: Diagenode

text: hematopoietic cell

text: leukemic

text: Homo sapiens

text: UAE (leukemic)

text: UAE_RNAPII(8WG16, Diagenode)_no

characteristic: title

text: no

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: RNAPII

text: Diagenode

text: hematopoietic cell

text: leukemic

text: Homo sapiens

text: UAE (leukemic)

text: UAE_RNAPII(8WG16, Diagenode)_5 hrs zinc

text: 5 hrs zinc


text: HVB, Genetics & Genomic Sciences, Mount Sinai Hospital

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody lot number

text: Abcam

text: T cells

text: CD4+/CD8+ double-positive (DP)

characteristic: developmental stage

text: Mus musculus

text: Primary T-cells

characteristic: strain

text: thymus

characteristic: tissue


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Santa Cruz

text: T cells

characteristic: cell type

text: CD4+/CD8+ double-positive (DP)

text: Mus musculus

text: Primary T-cells

text: thymus


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: antibody catalog number

text: Santa Cruz

text: T cells

text: CD4+/CD8+ double-positive (DP)

text: Mus musculus

text: Primary T-cells

text: thymus


text: live

text: Generic

text: T cells

text: CD4+/CD8+ double-positive (DP)

text: Mus musculus

characteristic: organism

text: Primary T-cells

text: thymus

characteristic: title


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: HMB

text: Blood

characteristic: histological type

text: No

characteristic: is tumor

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Family/Twin/Trios

characteristic: study design

text: Atrial Fibrillation

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Blood of a human male participant in the dbGaP study NHLBI GO-ESP: Family Studies: (Familial Atrial Fibrillation)


characteristic: External Id

text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Blood

text: HMB

text: Blood

text: No

text: SNP Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: male

text: Family/Twin/Trios

text: Atrial Fibrillation

text: NHLBI GO-ESP: Family Studies: (Familial Atrial Fibrillation)

text: Yes

characteristic: title


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: HMB

text: Blood

characteristic: histological type

text: No

characteristic: is tumor

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Family/Twin/Trios

characteristic: study design

text: Atrial Fibrillation

text: Yes

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study NHLBI GO-ESP: Family Studies: (Familial Atrial Fibrillation)


characteristic: External Id

text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: DNA

text: Buccal

text: HMB

text: Buccal cells

text: No

text: SNP Genotypes (NGS)

text: Homo sapiens

text: female

text: Family/Twin/Trios

text: Atrial Fibrillation

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Buccal of a human female participant in the dbGaP study NHLBI GO-ESP: Family Studies: (Familial Atrial Fibrillation)


text: BC Genome Sciences Centre

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Embyonic Stem Cell

characteristic: cell type

text: WT

characteristic: genotype/variation

text: Mus musculus

characteristic: organism

text: Embyonic Stem Cell

text: TT2 (C57BL/6/CBA F1)

characteristic: strain

characteristic: title


characteristic: External Id

text: BC Genome Sciences Centre

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Embyonic Stem Cell

text: SETDB1 KO

text: Mus musculus

text: Embyonic Stem Cell

text: TT2 (C57BL/6/CBA F1)


text: BC Genome Sciences Centre

text: live

text: Generic

text: Embyonic Stem Cell

text: H3K9me3 (Active Motif, cat #39161, lot #170)

characteristic: chip antibody

text: WT

text: Mus musculus

text: Embyonic Stem Cell

text: TT2 (C57BL/6/CBA F1)


text: BC Genome Sciences Centre

text: live

text: Generic

text: Embyonic Stem Cell

text: SETDB1 KO

text: Mus musculus

text: Embyonic Stem Cell

text: TT2 (C57BL/6/CBA F1)


text: BC Genome Sciences Centre

text: live

text: Generic

text: Embyonic Stem Cell

text: WT

text: Mus musculus

text: Embyonic Stem Cell


text: BC Genome Sciences Centre

text: live

text: Generic

text: Embyonic Stem Cell

text: DMNT1 TKO

text: Mus musculus

text: Embyonic Stem Cell


text: BC Genome Sciences Centre

text: live

text: Generic

text: Embyonic Stem Cell

text: WT

text: Mus musculus

text: Embyonic Stem Cell


text: BC Genome Sciences Centre

text: live

text: Generic

text: Embyonic Stem Cell

text: H3K9me3 (Active Motif, #39161, lot #170)

text: DMNT1 TKO

text: Mus musculus

text: Embyonic Stem Cell


text: WT/CRUK Gurdon Institute, University of Cambridge

text: live

text: Generic

characteristic: developmental stage

text: Caenorhabditis elegans

text: L3 embyros


text: live

text: Generic

text: Caenorhabditis elegans

text: L3 embyros

text: Input control 3


text: live

text: Generic

text: Caenorhabditis elegans

text: L3 embyros

text: Input control 4


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Aspergillus carbonarius ITEM 5010

characteristic: description

text: Aspergillus carbonarius ITEM 5010

text: ITEM 5010

text: Generic sample from Aspergillus carbonarius ITEM 5010


text: School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center

characteristic: INSDC center name

text: live

text: Generic

text: Vermilion

characteristic: cultivar

text: Sporobolus alterniflorus

text: Spartina alterniflora cv. Vermilion differential display cDNA library


text: Beijing University of Chemical Technology

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Blakeslea trispora

text: Blakeslea trispora EST Library


ycnbwsp-long

text: University of California - Davis, Drosophila Population Genomics Project

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Long insert - jumping library.

text: Drosophila melanogaster

text: ycnbwsp-long


ycnbwsp-long-HE

text: live

text: Generic

text: Long insert (jumping library) using DNA from a haploid embryo.

text: Drosophila melanogaster

text: ycnbwsp-long-HE


text: live

text: Generic

text: Spathaspora passalidarum

text: Spathaspora passalidarum

characteristic: sample number

text: Generic sample from Spathaspora passalidarum


text: BIG

text: live

text: Generic

text: Oryza sativa

characteristic: organism

text: The first generation restoring line for hybrid-rice


text: BIG

text: live

text: Generic

text: Oryza sativa

text: The second generation restoring line for hybrid-rice


text: BIG

text: live

text: Generic

text: Oryza sativa

text: The three generation restoring line for hybrid-rice


text: BIG

text: live

text: Generic

text: Oryza sativa

text: The four generation restoring line for hybrid-rice


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Streptococcus pneumoniae GA44288

characteristic: strain

text: Streptococcus pneumoniae GA44288


text: live

text: Generic

text: Streptococcus pneumoniae GA47281

text: Streptococcus pneumoniae GA47281

characteristic: title


characteristic: External Id

text: live

text: Generic

text: Streptococcus pneumoniae GA47751

text: Streptococcus pneumoniae GA47751


characteristic: INSDC first public

text: live

text: Generic

text: Streptococcus pneumoniae 4027-06

text: Streptococcus pneumoniae 4027-06


characteristic: INSDC last update

text: live

text: Generic

text: Streptococcus pneumoniae 6735-05

text: Streptococcus pneumoniae 6735-05


Transcriptomics of the whitefly

text: Beijing Institute of Genomics Chinese Acad of Sci - Key Lab

characteristic: INSDC secondary accession

text: live

text: Generic

text: Bemisia tabaci

text: Transcriptomics of the whitefly (Bemisia tabaci)


text: live

text: Generic

text: Vibrio cholerae HC-43B1

text: HC-43B1 HC-43B1


text: live

text: Generic

text: Crytosporangium arvum DSM 44712

text: Streptococcus oralis Uo5

text: DSM 44712

text: Generic sample from Streptococcus oralis Uo5


text: Department of Integrative Biology and Physiology, University of California, Los Angeles

text: live

text: Generic

text: transverse aortic constriction

characteristic: operation

text: Mus musculus

text: TAC mice at hypertrophy stage

text: left ventricle tissue

characteristic: tissue


text: live

text: Generic

text: sham operation

text: Mus musculus

text: SHAM mice at hypertrophy stage

text: left ventricle tissue


text: live

text: Generic

text: transverse aortic constriction

text: Mus musculus

text: TAC mice at heart failure stage

text: left ventricle tissue


text: live

text: Generic

text: sham operation

text: Mus musculus

text: SHAM mice at heart failure stage

text: left ventricle tissue


text: Genetics, Stanford University

text: live

text: Generic

characteristic: cell line

text: embryonic stem cells

characteristic: cell type

text: SMAD2/3, rabbit polyclonal

characteristic: chip antibody

text: Santa Cruz

characteristic: chip antibody manufacturer

text: Homo sapiens

characteristic: passages

text: human embryonic stem cells

text: hESC SMAD2/3 A ChIP-Seq pool


text: Genetics, Stanford University

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: embryonic stem cells

text: SMAD2/3, goat polyclonal

text: R&D Systems

text: Homo sapiens

text: human embryonic stem cells

text: hESC SMAD2/3 B ChIP-Seq rep1


text: Genetics, Stanford University

text: live

text: Generic

characteristic: SRA accession

text: embryonic stem cells

text: SMAD3, rabbit polyclonal

text: Abcam

text: Homo sapiens

characteristic: organism

text: human embryonic stem cells

text: hESC SMAD3 ChIP-Seq rep1


characteristic: External Id

text: Genetics, Stanford University

text: live

text: Generic

text: embryonic stem cells

text: SMAD4, goat polyclonal

text: R&D Systems

text: Homo sapiens

text: human embryonic stem cells

text: hESC SMAD4 ChIP-Seq rep1

characteristic: title


text: Genetics, Stanford University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: embryonic stem cells

text: FOXH1, sheep polyclonal

text: R&D Systems

text: Homo sapiens

text: human embryonic stem cells

text: hESC FOXH1 ChIP-Seq pool


text: Genetics, Stanford University

characteristic: INSDC secondary accession

text: live

text: Generic

text: embryonic stem cells

text: Homo sapiens

text: human embryonic stem cells

text: hESC input DNA pool


text: Genetics, Stanford University

text: live

text: Generic

text: embryonic stem cells

text: H3K4me3, rabbit polyclonal

text: Abcam

text: Homo sapiens

text: human embryonic stem cells

text: hESC H3K4me3 ChIP-Seq pool


text: Genetics, Stanford University

text: live

text: Generic

text: embryonic stem cells

text: H3K27me3, rabbit polyclonal

text: Upstate

text: Homo sapiens

text: human embryonic stem cells

text: hESC H3K27me3 ChIP-Seq pool


text: Genetics, Stanford University

text: live

text: Generic

text: embryonic stem cells

text: Homo sapiens

text: human embryonic stem cells

text: hESC input DNA pool (for histone modifications)


text: Genetics, Stanford University

text: live

text: Generic

text: ESC-derived endoderm

text: SMAD2/3, rabbit polyclonal

text: Santa Cruz

text: Homo sapiens

text: endoderm precursor cells

text: Endoderm SMAD2/3 A ChIP-Seq pool


text: Genetics, Stanford University

text: live

text: Generic

text: ESC-derived endoderm

text: SMAD2/3, goat polyclonal

text: R&D Systems

text: Homo sapiens

text: endoderm precursor cells

text: Endoderm SMAD2/3 B ChIP-Seq rep1


text: Genetics, Stanford University

text: live

text: Generic

text: ESC-derived endoderm

text: SMAD3, rabbit polyclonal

text: Abcam

text: Homo sapiens

text: endoderm precursor cells

text: Endoderm SMAD3 ChIP-Seq rep1


text: Genetics, Stanford University

text: live

text: Generic

text: ESC-derived endoderm

text: SMAD4, goat polyclonal

text: R&D Systems

text: Homo sapiens

text: endoderm precursor cells

text: Endoderm SMAD4 ChIP-Seq rep1


text: Genetics, Stanford University

text: live

text: Generic

text: ESC-derived endoderm

text: FOXH1, sheep polyclonal

text: R&D Systems

text: Homo sapiens

text: endoderm precursor cells

text: Endoderm FOXH1 ChIP-Seq pool


text: Genetics, Stanford University

text: live

text: Generic

text: ESC-derived endoderm

text: Homo sapiens

text: endoderm precursor cells

text: Endoderm input DNA pool


text: Genetics, Stanford University

text: live

text: Generic

text: ESC-derived endoderm

text: H3K4me3, rabbit polyclonal

text: Abcam

text: Homo sapiens

text: endoderm precursor cells

text: Endoderm H3K4me3 ChIP-Seq pool


text: Genetics, Stanford University

text: live

text: Generic

text: ESC-derived endoderm

text: H3K27me3, rabbit polyclonal

text: Upstate

text: Homo sapiens

text: endoderm precursor cells

text: Endoderm H3K27me3 ChIP-Seq pool


text: Genetics, Stanford University

text: live

text: Generic

text: ESC-derived endoderm

text: Homo sapiens

text: endoderm precursor cells

text: Endoderm input DNA pool (for histone modifications)


text: Molecular Neurobiology, MBB, Karolinska Institutet

text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

characteristic: source cell line

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_1

characteristic: well


text: live

text: Generic

text: Embryonic stem cell

characteristic: cell type

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_2


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_3


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_4


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_5


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_6


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_7


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_8


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_9


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_10


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_11


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_12


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_13


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_14


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_15


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_16


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_17


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_18


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_19


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_20


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_21


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_22


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_23


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_24


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_25


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_26


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_27


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_28


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_29


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_30


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_31


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_32


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_33


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_34


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_35


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_36


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_37


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_38


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_39


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_40


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_41


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_42


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_43


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_44


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_45


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_46


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_47


text: live

text: Generic

text: Embryonic stem cell

text: Mus musculus

text: Embryonic stem cell

text: Embryonic stem cell L139_ESC_48


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_49


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_50


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_51


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_52


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_53


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_54


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_55


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_56


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_57


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_58


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_59


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_60


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_61


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_62


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_63


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_64


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_65


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_66


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_67


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_68


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_69


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_70


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_71


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_72


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_73


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_74


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_75


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_76


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_77


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_78


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_79


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_80


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_81


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_82


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_83


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_84


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_85


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_86


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_87


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_88


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_89


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_90


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_91


text: live

text: Generic

text: Embryonic fibroblast

text: Mus musculus

text: Embryonic fibroblast

text: Embryonic fibroblast L139_MEF_92


text: live

text: Generic

text: Negative control

text: Mus musculus

text: Negative control

text: Negative control L139_EMPTY_93


text: live

text: Generic

text: Negative control

text: Mus musculus

text: Negative control

text: Negative control L139_EMPTY_94


text: live

text: Generic

text: Negative control

text: Mus musculus

text: Negative control

text: Negative control L139_EMPTY_95


text: live

text: Generic

text: Negative control

text: Mus musculus

text: Negative control

text: Negative control L139_EMPTY_96


text: live

text: Generic

text: Streptococcus pneumoniae GA47502

characteristic: strain

text: Streptococcus pneumoniae GA47502


text: Zhejiang University

text: live

text: Generic

text: colon cell

text: Total RNA from adjacent normal colon tissue was subjected to RT-PCR with primers PCR_F: TGGTGCCGTGACTCGGAT and PCR_B: GCTGAGTCCGAAAAGAGAGTC. PCR products were then cloned into pGEM-T Easy vectors. Clones were selected randomly and sequenced.

characteristic: description

text: Homo sapiens

text: colon

characteristic: tissue-type

text: Normal colon tissue human endogenous retrovirus-related transcript library

text: Plasmid

text: pGEM-T Easy (Promega)

characteristic: vector


text: Zhejiang University

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: colon cancer cells

text: Total RNA from colon tumor tissue was subjected to RT-PCR with primers PCR_F: TGGTGCCGTGACTCGGAT and PCR_B: GCTGAGTCCGAAAAGAGAGTC. PCR products were then cloned into pGEM-T Easy vectors. Clones were selected randomly and sequenced.

text: Homo sapiens

text: colon

text: Colon tumor human endogenous retrovirus-related transcript library

text: Plasmid

text: pGEM-T Easy (Promega)


text: Zhejiang University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: colon cancer

characteristic: cell-line

text: Total RNA from HT29 cells was subjected to RT-PCR with primers PCR_F: TGGTGCCGTGACTCGGAT and PCR_B: GCTGAGTCCGAAAAGAGAGTC. PCR products were then cloned into pGEM-T Easy vectors. Clones were selected randomly and sequenced.

text: Homo sapiens

text: Colon HT29 cells human endogenous retrovirus-related transcript library

text: Plasmid

text: pGEM-T Easy (Promega)


characteristic: External Id

text: Zhejiang University

text: live

text: Generic

text: colon cancer

text: Total RNA from LS174T cells was subjected to RT-PCR with primers PCR_F: TGGTGCCGTGACTCGGAT and PCR_B: GCTGAGTCCGAAAAGAGAGTC. PCR products were then cloned into pGEM-T Easy vectors. Clones were selected randomly and sequenced.

text: Homo sapiens

characteristic: organism

text: Colon LS174T cells human endogenous retrovirus-related transcript library

text: Plasmid

text: pGEM-T Easy (Promega)


text: Zhejiang University

characteristic: INSDC first public

text: live

text: Generic

text: colon cancer

text: RKO

text: Total RNA from RKO cells was subjected to RT-PCR with primers PCR_F: TGGTGCCGTGACTCGGAT and PCR_B: GCTGAGTCCGAAAAGAGAGTC. PCR products were then cloned into pGEM-T Easy vectors. Clones were selected randomly and sequenced.

text: Homo sapiens

text: Colon RKO cells human endogenous retrovirus-related transcript library

characteristic: title

text: Plasmid

text: pGEM-T Easy (Promega)


text: Zhejiang University

characteristic: INSDC last update

text: live

text: Generic

text: colon cancer

text: Total RNA from SW480 cells was subjected to RT-PCR with primers PCR_F: TGGTGCCGTGACTCGGAT and PCR_B: GCTGAGTCCGAAAAGAGAGTC. PCR products were then cloned into pGEM-T Easy vectors. Clones were selected randomly and sequenced.

text: Homo sapiens

text: Colon SW480 cells human endogenous retrovirus-related transcript library

text: Plasmid

text: pGEM-T Easy (Promega)


text: Zhejiang University

text: live

text: Generic

text: colon cancer

text: Total RNA from SW620 cells was subjected to RT-PCR with primers PCR_F: TGGTGCCGTGACTCGGAT and PCR_B: GCTGAGTCCGAAAAGAGAGTC. PCR products were then cloned into pGEM-T Easy vectors. Clones were selected randomly and sequenced.

text: Homo sapiens

text: Colon SW620 cells human endogenous retrovirus-related transcript library

text: Plasmid

text: pGEM-T Easy (Promega)


Salix repens

text: University of Oslo

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Pyrosequencing of the ITS1 region using a nested PCR approach and tagged fusion primers. <TAGS> ATACGACGTA TCACGTACTA CGTCTAGTAC TCTACGTAGC TGTACTACTC <Forward primer> GGAAGTAAAAGTCGTAACAAGG <Reverse primer> GCATCGATGAAGAACGCAGC <Adaptor> CTGAGCGGGCTGGCAAGGCGCATAG <EOF>

text: root metagenome

text: Root associated fungi on Salix repens


Stele rep 2 (WOL2)

text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: Stele small RNA seq


Endodermis rep 1 (SCR1)

text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: Endodermis small RNA seq


Whole root sorted rep 1 (WR1, lane 3)

text: Duke University

text: live

text: Generic

text: unsorted!

text: Arabidopsis thaliana

text: Whole root unsorted small RNA seq


Epidermis rep 1 (WER1, lane4)

text: Duke University

text: live

text: Generic

text: Arabidopsis thaliana

text: Epidermis rep 1


whole seedling centromere methylation

text: University of Georgia

text: live

text: Generic

text: B73 stock, 14-day-old seedlings

text: Zea mays

text: Maize B73 seedlings


root tip small RNA

text: University of Georgia

text: live

text: Generic

text: Wild type maize seeds, B73 stock, were germinated in vermiculite at 30 C for three days and the last 2-3 mm of the primary root tips cut off with a razor blade and frozen on dry ice.

text: Zea mays

text: maize B73 root tips


text: Malaysia Genome Institute

text: live

text: Generic

text: RNA was extracted from E. tenella second generation merozoites using the TRIzol reagent and used in the construction of a full-length cDNA library by the oligo-capping method. Briefly, RNAs were sequentially treated with bacterial alkaline phosphatase (BAP) and tobacco acid pyprophosphatase (TAP). The BAP-TAP treated RNAs were then ligated with 5' oligo-cap linker using RNA ligase. First strand cDNAs were synthesised with the oligo-capped mRNA as a template, followed by PCR using the oligo-cap linker sequence and oligo-dT-adapter as primers. The full-length cDNAs produced were then cloned into the pME18S-FL3 plasmid vector and subsequently transformed into Escherichia coli ElectroMAX DH10B cells (Invitrogen, USA).

text: Second generation merozoite

characteristic: dev-stage

text: Eimeria tenella

text: Houghton

text: Eimeria tenella EtmzflcDNA


text: Oil Crops Research Institute, CAAS

text: live

text: Generic

characteristic: cultivar

text: flowering stage

text: Sesamum indicum

text: hermaphrodite

characteristic: sex

text: root tip


text: University of California - Davis, Drosophila Population Genomics Project

text: live

text: Generic

text: Drosophila simulans


Siraitia grosvenorii fruits

text: Institute of Medicinal Plant, Chinese Academy of Medical Sciences

text: live

text: Generic

text: Siraitia grosvenorii, which belongs to the Cucurbitaceae family, has long been used in traditional Chinese medicine as a natural sweetener and as a folk medicine for the treatment of lung congestion, colds and sore throats. Equal amount of RNA taken from S. grosvenorii fruit at 50 days after flowering (DAF) and 70 DAF using Trizol reagent (Invitrogen).

characteristic: description

text: Siraitia grosvenorii


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

characteristic: cell type

text: Mus musculus

text: Neural progenitor cells

characteristic: strain

characteristic: template number

text: 1st digestion HindIII; 2nd digestion DpnII/PvuII

characteristic: template preparation

text: R23a_NPC 129Xa-CASTXi (#132)


text: Hubrecht Institute

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Pctk1_Xa_NPC 129Xa-CASTXi (#132)


characteristic: External Id

text: Hubrecht Institute

characteristic: INSDC first public

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

characteristic: organism

text: Neural progenitor cells

text: 1st digestion HindIII; 2nd digestion Csp6I;digestion post PCR SnaBI

text: MeCP2_Xa_NPC 129Xa-CASTXi (#169)


text: Hubrecht Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Slitrk4_Xa_NPC 129Xa-CASTXi (#169)

characteristic: title


text: Hubrecht Institute

text: live

text: Generic

characteristic: SRA accession

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Pcdh11x_Xa_NPC 129Xi-CASTXa (#170)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Jarid1C_Xa_NPC 129Xa-CASTXi (#132)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 1st digestion HindIII; 2nd digestion NlaIII;linearization NcoI

text: R23a_NPC 129Xi-CASTXa (#137)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Pctk1_Xi_NPC 129Xi-CASTXa (#137)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: MeCP2_Xi_NPC 129Xi-CASTXa (#170)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Slitrk4 _Xi_NPC 129Xi-CASTXa (#170)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Pcdh11x_Xi_NPC 129Xa-CASTXi (#169)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 1st digestion HindIII; 2nd digestion Csp6I; digestion post PCR BamHI

text: Xist_Xi_NPC 129Xi-CASTXa (#170)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Jarid1C_Xi_NPC 129Xi-CASTXa (#137)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: R23a_NPC 129Xi-CastXa (#179)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Pctk1_condXi_NPC 129Xi-CastXa (#179)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 1st digestion HindIII; 2nd digestion Csp6I

text: Mecp2_condXi_NPC 129Xi-CastXa (#177)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 1st digestion HindIII; 2nd digestion DpnII

text: Pcdh11X_condXi_NPC 129Xi-CastXa (#178)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Slitrk4_condXi_NPC 129Xi-CastXa (#177)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Xist_condXi_NPC 129Xi-CastXa (#177)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: Jarid1C_condXi_NPC 129Xi-CastXa (#178)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 1st digestion HindIII; 2nd digestion Csp6I; digestion post PCR Tsp509I

text: Sox3_condXi_NPC 129Xi-CastXa (#177)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 129SvJ-knock out Xist/CAST

text: 1st digestion HindIII; 2nd digestion DpnII/PvuII; Cre mediated Xist knock out was achieved by first differentiating 129SVJ-Xist2lox/CAST ES cells (Csankovszki et al. 1999) to NPCs. NPCs showing proper XCI were transfected with pCMV-Cre-puro using AmaxaÂ® according to manufacturers protocol, followed by transient puromycin selection for 2 days. XistKO NPCs were cultured an additional 12 days with cell numbers increasing >10 fold before analysis to dilute out stable Xi markers.

text: R23a_KOXi_NPC 129Xi-CastXa (#182)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 129SvJ-knock out Xist/CAST

text: Pctk1_KOXi_NPC 129Xi-CastXa (#182)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 129SvJ-knock out Xist/CAST

text: 1st digestion HindIII; 2nd digestion Csp6I; Cre mediated Xist knock out was achieved by first differentiating 129SVJ-Xist2lox/CAST ES cells (Csankovszki et al. 1999) to NPCs. NPCs showing proper XCI were transfected with pCMV-Cre-puro using AmaxaÂ® according to manufacturers protocol, followed by transient puromycin selection for 2 days. XistKO NPCs were cultured an additional 12 days with cell numbers increasing >10 fold before analysis to dilute out stable Xi markers.

text: Mecp2_KOXi_NPC 129Xi-CastXa (#180)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 129SvJ-knock out Xist/CAST

text: 1st digestion HindIII; 2nd digestion DpnII; Cre mediated Xist knock out was achieved by first differentiating 129SVJ-Xist2lox/CAST ES cells (Csankovszki et al. 1999) to NPCs. NPCs showing proper XCI were transfected with pCMV-Cre-puro using AmaxaÂ® according to manufacturers protocol, followed by transient puromycin selection for 2 days. XistKO NPCs were cultured an additional 12 days with cell numbers increasing >10 fold before analysis to dilute out stable Xi markers.

text: Pcdh11X_KOXi_NPC 129Xi-CastXa (#181)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 129SvJ-knock out Xist/CAST

text: Slitrk4_KOXi_NPC 129Xi-CastXa (#180)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 129SvJ-knock out Xist/CAST

text: Jarid1C_KOXi_NPC 129Xi-CastXa (#181)


text: Hubrecht Institute

text: live

text: Generic

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: 129SvJ-knock out Xist/CAST

text: 1st digestion HindIII; 2nd digestion Csp6I; digestion post PCR Tsp509I; Cre mediated Xist knock out was achieved by first differentiating 129SVJ-Xist2lox/CAST ES cells (Csankovszki et al. 1999) to NPCs. NPCs showing proper XCI were transfected with pCMV-Cre-puro using AmaxaÂ® according to manufacturers protocol, followed by transient puromycin selection for 2 days. XistKO NPCs were cultured an additional 12 days with cell numbers increasing >10 fold before analysis to dilute out stable Xi markers.

text: Sox3_KOXi_NPC 129Xi-CastXa (#180)


text: Dr. Gottgens, Dept. of haematology, CIMR, University of cambridge

text: live

text: Generic

characteristic: antibody catalog number

characteristic: antibody lot number

text: Abcam

characteristic: antibody vendor

text: Runx1(Venus/+) ES cell line

characteristic: cell line

characteristic: cell subpopulation

text: differentiated ES cells

characteristic: chip antibody

characteristic: days of differentiation

text: Mus musculus

text: FACS-sorted day 6 differentiated ES cells, Runx1+/VE-cadherin+/CD41+, Runx1 ChIP

text: Runx1+/VE-cadherin+/CD41+, ChIP-seq


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: Abcam

text: Runx1(Venus/+) ES cell line

text: differentiated ES cells

characteristic: cell type

text: Mus musculus

text: FACS-sorted day 6 differentiated ES cells, Runx1+/VE-cadherin+/CD41-, Runx1 ChIP

text: Runx1+/VE-cadherin+/CD41-, ChIP-seq


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Abcam

text: Runx1(Venus/+) ES cell line

text: differentiated ES cells

text: Mus musculus

text: FACS-sorted day 6 differentiated ES cells, Runx1+/VE-cadherin-/CD41+, Runx1 ChIP

text: Runx1+/VE-cadherin-/CD41+, ChIP-seq


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Runx1(Venus/+) ES cell line

text: unsorted

text: differentiated ES cells

text: IgG

text: Mus musculus

characteristic: organism

text: Runx1(Venus/+) ES cell line, IgG control

text: IgG control, ChIP-seq


text: Snyder, Genetics, Stanford University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: mouse anti-FLAG (Sigma, catalog # F1804)

text: stably expressing FLAG-KAP1 wild type

characteristic: genotype/variation

characteristic: harvest date

text: Homo sapiens

text: Transformed embryonic kidney cell line

text: FLAG-KAP1 wild type_HEK293 stables_ChIP-seq_rep1_lane3,6,7

characteristic: title


text: Snyder, Genetics, Stanford University

text: live

text: Generic

characteristic: cell line

text: stably expressing FLAG-KAP1 HP1-binding domain mutant

text: Homo sapiens

text: Transformed embryonic kidney cell line

text: FLAG-KAP1 HP1BDmut_HEK293 stables_ChIP-seq_rep1_lane4


text: Snyder, Genetics, Stanford University

text: live

text: Generic

characteristic: chip antibody

text: stably expressing FLAG-KAP1 N-ter RBCC{delta} mutant

text: Homo sapiens

text: Transformed embryonic kidney cell line

text: FLAG-KAP1 N-ter RBCC{delta} mut_HEK293 stables_ChIP-seq_rep1_lane2


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: stably expressing FLAG-KAP1 C-ter PB{delta} mutant

text: Homo sapiens

text: Transformed embryonic kidney cell line

text: FLAG-KAP1 C-ter PB{delta}_HEK293 stables_ChIP-seq_rep1_lane5


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: stably expressing Tetracycline repressor and FLAG-KAP1 N/C-ter (RBCC+PB){delta} mutant

text: Homo sapiens

text: Transformed embryonic kidney cell line

text: FLAG-KAP1 N/C-ter (RBCC+PB){delta}_T -Rex HEK293 stables_ChIP-seq_rep1_lane2


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: rabbit anti-KAP1 (Abcam, catalog # ab10483)

text: original cells (non-transformed) from ATCC

text: Homo sapiens

text: Untransformed embryonic kidney cell line

text: Endogenous KAP1_HEK293 cells_ChIP-seq_rep1_lane3


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: Homo sapiens

text: Endogenous KAP1_HEK293 cells_ChIP-seq_rep1_lane4


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: rabbit anti-ELK4 (SantaCruz, catalog # sc13030-X)

text: Homo sapiens

text: Endogenous ELK4_HEK293 cells_ChIP-seq_rep1_lane7


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: Homo sapiens

text: Endogenous ELK4_HEK93 cells_ChIP-seq_rep2_lane8


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: stably expressing FLAG-KAP1 wild type

text: Homo sapiens

text: Transformed embryonic kidney cell line

text: Input_1_HEK293 stables_ChIP-seq_rep1_lane6


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: stably expressing FLAG-KAP1 HP1-binding domain mutant

text: Homo sapiens

text: Transformed embryonic kidney cell line

text: Input_2_HEK293 stables_ChIP-seq_rep1_lane6


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: stably expressing FLAG-KAP1 N-ter RBCC{delta} mutant

text: Homo sapiens

text: Transformed embryonic kidney cell line

text: Input_3_HEK293 stables_ChIP-seq_rep1_lane5


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: stably expressing FLAG-KAP1 C-ter PB{delta} mutant

text: Homo sapiens

text: Transformed embryonic kidney cell line

text: Input_4_HEK293 stables_ChIP-seq_rep1_lane6


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: stably expressing shKAP1 and FLAG-KAP1 wild type

text: Homo sapiens

text: Osteosarcoma cell line

text: FLAG-KAP1 wild type_U2OS stables_ChIP-seq_rep1_lane8


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: Homo sapiens

text: Osteosarcoma cell line

text: Input_U2OS stables_ChIP-seq_rep1_lane4


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: mouse anti-FLAG (Sigma, catalog # F1804)

text: Homo sapiens

text: Osteosarcome cell line

text: FLAG-KAP1 wild type_U2OS stables_ChIP-seq_rep2A_lane5


text: Snyder, Genetics, Stanford University

text: live

text: Generic

text: Homo sapiens

text: Osteosarcome cell line

text: FLAG-KAP1 wild type_U2OS stables_ChIP-seq_rep2B_lane7


text: Erin O'Shea, Molecular and Cellular Biology, Harvard University

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast cells

characteristic: strain

text: pho4::PHO4-C-Avitag-TRP1 ura3::pRS306-birA

characteristic: variant


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: Saccharomyces cerevisiae

text: yeast cells

text: pho2::N-Avitag-PHO2 ura3::pRS306-birA


characteristic: External Id

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast cells

text: cbf1::CBF1-C-Avitag-TRP1 ura3::pRS306-birA


text: live

text: Generic

characteristic: NCBI submission model

text: Saccharomyces cerevisiae

text: yeast cells


text: live

text: Generic

characteristic: NCBI submission package

text: Saccharomyces cerevisiae

text: yeast cells

text: pho4::PHO4-C-Avitag-TRP1 pho80::HIS3MX6 ura3::pRS306-birA


characteristic: INSDC first public

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast cells

text: pho4::PHO4-C-Avitag-TRP1 cbf1::HIS3MX6 pho80::CgLEU2 ura3::pRS306-birA


characteristic: INSDC last update

text: live

text: Generic

text: Saccharomyces cerevisiae

text: yeast cells

text: pho4::PHO4-C-Avitag- TRP1 pho2:: HI3MX6 ura3::pRS306-birA


text: live

text: Generic

text: Saccharomyces cerevisiae

characteristic: organism

text: yeast cells

text: wild type


text: modENCODE DCC, Ontario Institute for Cancer Research

characteristic: INSDC secondary accession

text: live

text: Generic

text: fed L1

characteristic: developmental stage

text: unc119(ed3);wgIs321(tlp-1::TY1 EGFP FLAG;unc119)

characteristic: genotype

text: Caenorhabditis elegans

text: hermaphrodite

characteristic: sex

text: Snyder_TLP-1_Input_L1 extraction1_seq1 channel_1

text: OP321(official name : TLP-1 genotype : unc119(ed3); wgIs321(tlp-1::TY1 EGFP FLAG; unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The spatio-temporal expression pattern of TLP-1::EGFP fusion protein was examined through in vivo microscopy. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the TLP-1 transcription factor. made_by : Bob Waterston's lab from UW )

text: Snyder_TLP-1_Input_L1 extraction1_seq1 aliquote 1


text: live

text: Generic

characteristic: SRA accession

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_TLP-1_Input_L1 extraction2_seq2 channel_1

text: Snyder_TLP-1_Input_L1 extraction2_seq2 aliquote 1

characteristic: title


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_TLP-1_GFP_L1_rep1 extraction3_seq3 channel_1

text: Snyder_TLP-1_GFP_L1_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_TLP-1_GFP_L1_rep2 extraction4_seq4 channel_1

text: Snyder_TLP-1_GFP_L1_rep2 extraction4_seq4 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PHA-4_Input_L3 extraction1_seq1 channel_1

text: OP37(official name : OP37 genotype : unc-119(ed3) III; wgIs37 [unc-119(+) pha-4::TY1::EGFP::3xFLAG] outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The PHA-4::EGFP fusion protein is expressed in the correct pha-4 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the PHA-4 transcription factor. made_by : R. Waterston and S. Kim )

text: Snyder_PHA-4_Input_L3 extraction1_seq1 aliquote 1


text: live

text: Generic

text: unc-119(ed3) III; wgIs37 [unc-119(+) pha-4::TY1::EGFP::3xFLAG]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PHA-4_Input_L3 extraction2_seq2 channel_1

text: Snyder_PHA-4_Input_L3 extraction2_seq2 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PHA-4_GFP_L3_rep1 extraction3_seq3 channel_1

text: Snyder_PHA-4_GFP_L3_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_PHA-4_GFP_L3_rep2 extraction4_seq4 channel_1

text: Snyder_PHA-4_GFP_L3_rep2 extraction4_seq4 aliquote 1


text: live

text: Generic

text: L4-Young Adult

text: unc119(ed3);wgIs215(W03F9.2::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_W03F9.2_Input_YA extraction1_seq1 channel_1

text: OP215(official name : OP215 genotype : unc119(ed3); wgIs215(W03F9.2::TY1 EGFP FLAG; unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for bombardment transformation of an unc-119(ed3) strain. The W03F9.2::EGFP fusion protein is mainly expressed in germline cells. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the W03F9.2 transcription factor. made_by : Tony Hyman's lab from MPI-CBG )

text: Snyder_W03F9.2_Input_YA extraction1_seq1 aliquote 1


text: live

text: Generic

text: L4-Young Adult

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_W03F9.2_Input_YA extraction2_seq2 channel_1

text: Snyder_W03F9.2_Input_YA extraction2_seq2 aliquote 1


text: live

text: Generic

text: L4-Young Adult

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_W03F9.2_GFP_YA_rep1 extraction3_seq3 channel_1

text: Snyder_W03F9.2_GFP_YA_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: L4-Young Adult

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_W03F9.2_GFP_YA_rep2 extraction4_seq4 channel_1

text: Snyder_W03F9.2_GFP_YA_rep2 extraction4_seq4 aliquote 1


text: live

text: Generic

text: unc119(ed3);wgIs322(ztf-4::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZTF-4_Input_L3 extraction1_seq1 channel_1

text: OP322(official name : ZTF-4 genotype : unc119(ed3); wgIs322(ztf-4::TY1 EGFP FLAG; unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The spatio-temporal expression pattern of ZTF-4::EGFP fusion protein was examined through in vivo microscopy. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the ZTF-4 transcription factor. made_by : Bob Waterston's lab from UW )

text: Snyder_ZTF-4_Input_L3 extraction1_seq1 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZTF-4_Input_L3 extraction2_seq2 channel_1

text: Snyder_ZTF-4_Input_L3 extraction2_seq2 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZTF-4_GFP_L3_rep1 extraction3_seq3 channel_1

text: Snyder_ZTF-4_GFP_L3_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZTF-4_GFP_L3_rep2 extraction4_seq4 channel_1

text: Snyder_ZTF-4_GFP_L3_rep2 extraction4_seq4 aliquote 1


text: live

text: Generic

text: unc119(ed3);wgIs332(ztf-71::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZTF-7_Input_L4 extraction1_seq1 channel_1

text: OP332(official name : ZTF-7 genotype : unc119(ed3); wgIs332(ztf-71::TY1 EGFP FLAG; unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The spatio-temporal expression pattern of ZTF-7::EGFP fusion protein was examined through in vivo microscopy. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the ZTF-7 transcription factor. made_by : Bob Waterston's lab from UW )

text: Snyder_ZTF-7_Input_L4 extraction1_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZTF-7_Input_L4 extraction2_seq2 channel_1

text: Snyder_ZTF-7_Input_L4 extraction2_seq2 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZTF-7_GFP_L4_rep1 extraction3_seq3 channel_1

text: Snyder_ZTF-7_GFP_L4_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZTF-7_GFP_L4_rep2 extraction4_seq4 channel_1

text: Snyder_ZTF-7_GFP_L4_rep2 extraction4_seq4 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: unc119(ed3);wgIs83(zag-1::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZAG-1_Input_L2 extraction1_seq1 channel_1

text: OP83(official name : OP83 genotype : unc119(ed3); wgIs83(zag-1::TY1 EGFP FLAG; unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The ZAG-1::EGFP fusion protein is expressed in the correct zag-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the ZAG-1 transcription factor. made_by : R Waterston )

text: Snyder_ZAG-1_Input_L2 extraction1_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZAG-1_Input_L2 extraction2_seq2 channel_1

text: Snyder_ZAG-1_Input_L2 extraction2_seq2 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZAG-1_GFP_L2_rep1 extraction3_seq3 channel_1

text: Snyder_ZAG-1_GFP_L2_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_ZAG-1_GFP_L2_rep2 extraction4_seq4 channel_1

text: Snyder_ZAG-1_GFP_L2_rep2 extraction4_seq4 aliquote 1


text: live

text: Generic

text: unc-119(ed3); wgIs174(ces-1::TY1 EGFP FLAG;unc-119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_CES-1_Input_L4 extraction1_seq1 channel_1

text: OP174(official name : OP174 genotype : unc-119(ed3); wgIs174(ces-1::TY1 EGFP FLAG; unc-119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CES-1::EGFP fusion protein is expressed in the correct ces-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CES-1 transcription factor. made_by : S. Kim )

text: Snyder_CES-1_Input_L4 extraction1_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_CES-1_Input_L4 extraction2_seq2 channel_1

text: Snyder_CES-1_Input_L4 extraction2_seq2 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_CES-1_GFP_L4_rep1 extraction3_seq3 channel_1

text: Snyder_CES-1_GFP_L4_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_CES-1_GFP_L4_rep2 extraction4_seq4 channel_1

text: Snyder_CES-1_GFP_L4_rep2 extraction4_seq4 aliquote 1


text: live

text: Generic

text: unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_Input_L3 extraction1_seq1 channel_1

text: OP600(official name : OP600 genotype : unc119(ed3); wgIs600(unc-62::TY1 EGFP FLAG; unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The UNC-62::EGFP fusion protein is expressed in the correct unc-62 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the UNC-62 transcription factor. made_by : S Kim )

text: Snyder_UNC-62_Input_L3 extraction1_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_Input_L3 extraction2_seq2 channel_1

text: Snyder_UNC-62_Input_L3 extraction2_seq2 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_GFP_L3_rep1 extraction3_seq3 channel_1

text: Snyder_UNC-62_GFP_L3_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_GFP_L3_rep2 extraction4_seq4 channel_1

text: Snyder_UNC-62_GFP_L3_rep2 extraction4_seq4 aliquote 1


text: live

text: Generic

text: unc119(ed3);wgIs317(nhr-28::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_NHR-28_Input_L4 extraction1_seq1 channel_1

text: OP317(official name : OP317 genotype : unc119(ed3); wgIs317(nhr-28::TY1 EGFP FLAG; unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The NHR-28::EGFP fusion protein is expressed in the correct nhr-28 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the NHR-28 transcription factor. made_by : R Waterston )

text: Snyder_NHR-28_Input_L4 extraction1_seq1 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_NHR-28_Input_L4 extraction2_seq2 channel_1

text: Snyder_NHR-28_Input_L4 extraction2_seq2 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_NHR-28_GFP_L4_rep1 extraction3_seq3 channel_1

text: Snyder_NHR-28_GFP_L4_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_NHR-28_GFP_L4_rep2 extraction4_seq4 channel_1

text: Snyder_NHR-28_GFP_L4_rep2 extraction4_seq4 aliquote 1


text: live

text: Generic

text: unc119(ed3);wgIs304(fos-1::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_FOS-1_Input_L2 extraction1_seq1 channel_1

text: OP304(official name : OP304 genotype : unc119(ed3); wgIs304(fos-1::TY1 EGFP FLAG; unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The FOS-1::EGFP fusion protein is expressed in the correct fos-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the FOS-1 transcription factor. made_by : R Waterston )

text: Snyder_FOS-1_Input_L2 extraction1_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_FOS-1_Input_L2 extraction2_seq2 channel_1

text: Snyder_FOS-1_Input_L2 extraction2_seq2 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_FOS-1_GFP_L2_rep1 extraction3_seq3 channel_1

text: Snyder_FOS-1_GFP_L2_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_FOS-1_GFP_L2_rep2 extraction4_seq4 channel_1

text: Snyder_FOS-1_GFP_L2_rep2 extraction4_seq4 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_Input_L2 extraction1_seq1 channel_1

text: OP600(official name : OP600 genotype : unc119(ed3); wgIs600(unc-62::TY1 EGFP FLAG; unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The UNC-62::EGFP fusion protein is expressed in the correct unc-62 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the UNC-62 transcription factor. made_by : S Kim )

text: Snyder_UNC-62_Input_L2 extraction1_seq1 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_Input_L2 extraction2_seq2 channel_1

text: Snyder_UNC-62_Input_L2 extraction2_seq2 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_GFP_L2_rep1 extraction3_seq3 channel_1

text: Snyder_UNC-62_GFP_L2_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_GFP_L2_rep2 extraction4_seq4 channel_1

text: Snyder_UNC-62_GFP_L2_rep2 extraction4_seq4 aliquote 1


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Cyanothece sp. ATCC 51472

characteristic: description

text: Crocosphaera subtropica ATCC 51472

text: ATCC 51472

text: Generic sample from Cyanothece sp. ATCC 51472


text: live

text: Generic

text: unc119(ed3);wgIs343(C01B12.2:TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_C01B12.2_Input_L2 extraction1_seq1 channel_1

text: OP343(official name : OP343 genotype : unc119(ed3); wgIs343(C01B12.2:TY1 EGFP FLAG; unc119) outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for bombardment transformation of an unc-119(ed3) strain. The C01B12.2::EGFP fusion protein has broad expression pattern at L2 stage. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the DPL-1 transcription factor. made_by : Bob Waterston's lab from UW )

characteristic: strain

text: Snyder_C01B12.2_Input_L2 extraction1_seq1 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_C01B12.2_Input_L2 extraction2_seq2 channel_1

text: Snyder_C01B12.2_Input_L2 extraction2_seq2 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_C01B12.2_GFP_L2_rep1 extraction3_seq3 channel_1

text: Snyder_C01B12.2_GFP_L2_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_C01B12.2_GFP_L2_rep2 extraction4_seq4 channel_1

text: Snyder_C01B12.2_GFP_L2_rep2 extraction4_seq4 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_EOR-1_Input_L3 extraction1_seq1 channel_1

text: OP81(official name : OP81 genotype : unc-119(ed3) III; wgIs81 [unc-119(+) eor-1::TY1::EGFP::3xFLAG] outcross : 0 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The EOR-1::EGFP fusion protein is expressed in the correct eor-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the EOR-1 transcription factor. made_by : R. Waterston and S. Kim )

text: Snyder_EOR-1_Input_L3 extraction1_seq1 aliquote 1


text: live

text: Generic

text: unc-119(ed3) III; wgIs81 [unc-119(+) eor-1::TY1::EGFP::3xFLAG]

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_EOR-1_Input_L3 extraction2_seq2 channel_1

text: Snyder_EOR-1_Input_L3 extraction2_seq2 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_EOR-1_GFP_L3_rep1 extraction3_seq3 channel_1

text: Snyder_EOR-1_GFP_L3_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_EOR-1_GFP_L3_rep2 extraction4_seq4 channel_1

text: Snyder_EOR-1_GFP_L3_rep2 extraction4_seq4 aliquote 1


text: modENCODE DCC, Ontario Institute for Cancer Research

text: live

text: Generic

text: fed L1

text: unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_Input_L1 extraction1_seq1 channel_1

text: OP600(official name : OP600 genotype : unc119(ed3); wgIs600(unc-62::TY1 EGFP FLAG; unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The UNC-62::EGFP fusion protein is expressed in the correct unc-62 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the UNC-62 transcription factor. made_by : S Kim )

text: Snyder_UNC-62_Input_L1 extraction1_seq1 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_Input_L1 extraction2_seq2 channel_1

text: Snyder_UNC-62_Input_L1 extraction2_seq2 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_GFP_L1_rep1 extraction3_seq3 channel_1

text: Snyder_UNC-62_GFP_L1_rep1 extraction3_seq3 aliquote 1


text: live

text: Generic

text: fed L1

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_UNC-62_GFP_L1_rep2 extraction4_seq4 channel_1

text: Snyder_UNC-62_GFP_L1_rep2 extraction4_seq4 aliquote 1


text: live

text: Generic

text: Caenorhabditis elegans

text: hermaphrodite

text: Snyder_NHR-6v2_Input_L2 extraction1_seq1 channel_1

text: OP90(official name : OP90 genotype : unc-119(ed3) III; wgIs90 [unc-119(+) nhr-6::TY1::EGFP::3xFLAG] outcross : 0 mutagen : None tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The NHR-6::EGFP fusion protein is expressed in neurons surrounding pharynx at L2 stage. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the NHR-6 transcription factor. made_by : R. Waterston )

text: Snyder_NHR-6v2_Input_L2 extraction1_seq1 aliquote 1