text: live

text: Generic

text: Drosophila melanogaster

text: E0-12_HDAC-497_ChIPSeq_1 amd 2

text: ChIP

text: E0-12_HDAC-497_ChIPSeq_1 and 2


status: PUBLIC

characteristic: External Id

text: Institute for Genomics and Systems Biology, University of Chicago

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: antibody

characteristic: development stage

text: Drosophila melanogaster

characteristic: organism

text: E0-12_HDAC-498_ChIPSeq_1 and 2

text: ChIP

characteristic: test

text: E0-12_HDAC-498_ChIPSeq_1 and 2

characteristic: title


text: live

text: Generic

text: Drosophila melanogaster

text: E0-12_HDAC-499_ChIPSeq_1 and 2

text: ChIP

text: E0-12_HDAC-499_ChIPSeq_1 and 2


text: live

text: Generic

text: Drosophila melanogaster

text: E0-12_HDAC-500_ChIPSeq_1 and 2

text: ChIP

text: E0-12_HDAC-500_ChIPSeq_1 and 2


text: live

text: Generic

text: Drosophila melanogaster

text: E0-12_HDAC-501_ChIPSeq_1 and 2

text: ChIP

text: E0-12_HDAC-501_ChIPSeq_1 and 2


text: live

text: Generic

text: Caudal

text: Drosophila melanogaster

text: E0-4h_7T_ChIPSeq_1 and 2

text: ChIP

text: E0-4h_7T_ChIPSeq_1 and 2


text: live

text: Generic

text: Drosophila melanogaster

text: input

characteristic: reference


text: live

text: Generic

text: goat anti GFP

text: Drosophila melanogaster

text: ChIP


text: live

text: Generic

text: CTCF

characteristic: cell line

text: Drosophila melanogaster

text: S2_CTCF200_ChIPSeq_1 and 2

text: ChIP

text: S2_CTCF200_ChIPSeq_1 and 2


text: live

text: Generic

text: Drosophila melanogaster

text: input


text: live

text: Generic

text: CTCF

text: Drosophila melanogaster

text: S2_CTCF500_ChIPSeq_1 and 2

text: ChIP

text: S2_CTCF500_ChIPSeq_1 and 2


text: live

text: Generic

text: goat anti GFP

text: Drosophila melanogaster

text: WPP30-33_EcRGFP_ChIPSeq_1, 2 and 3

text: ChIP

text: WPP30-33_EcRGFP_ChIPSeq_1, 2 and 3


text: live

text: Generic

text: goat anti GFP

text: Drosophila melanogaster

text: WPP_EcRGFP_ChIPSeq_1, 2 and 3

text: ChIP

text: WPP(EcR-GFP)_ChIPSeq_1, 2 and 3


text: live

text: Generic

text: goat anti GFP

text: Drosophila melanogaster

text: w3L_7TGFP_ChIPSeq_1, 2 and 3

text: ChIP

text: w3L_7T(cad-GFP)_ChIPSeq_1, 2 and 3


text: Developmental Genomics, LCDB, NIDDK, NIH

text: live

text: Generic

text: female

characteristic: gender

text: Drosophila pseudoobscura

text: Drosophila Species Stock Center (DSSC) 14011-0121.94. Line MV2-25 Baylor sequencing strain (Richards et al. 2005. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res. 15:1-18). Wild-type genotype. Collected from Anderson, Mesa Verde, Colorado in 1996. Unknown inbred generations.

characteristic: source

text: head tissue

text: head

characteristic: tissue


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: male

text: Drosophila pseudoobscura

text: head tissue

text: head


C2C12 myotubes

text: Fred Hutchinson Cancer Research Center

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: C2C12 cells were grown in DMEM with 10% fetal bovine serum, and differentiation was induced at confluence in DMEM with 2% horse serum, 10 ug/mL insulin, and 10 ug/mL transferrin (differentiation media, DM) for 48 h.

characteristic: description

text: Mus musculus

text: Generic sample from Mus musculus


C2C12 myoblasts 95% confluency

text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: C2C12 cells were grown to 95% confluency in DMEM with 10% fetal bovine serum

text: Mus musculus

text: Generic sample from Mus musculus


MEF MyoD

text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

text: Mouse embryo Myf-5/MyoD null fibroblasts transduced with pCLBABE-Myod retrovirus or control pCLBABE retrovirus were maintained in DMEM with 2ug/ml puromycin and 10% bovine calf serum, and differentiation was induced at confluence in DM.

text: Mus musculus

characteristic: organism

text: Generic sample from Mus musculus


primary Myotubes

text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

text: Primary mouse myoblasts were isolated from adult mouse hindlimb muscle (see supplementary methods for details), cultured in Ham's F10 media supplemented with 20% FBS, 2.5ng/ml bFGF, penicillin/streptomycin, and L-glutamine. Cells were differentiated for 3 days in DM before collection.

text: Mus musculus

text: Generic sample from Mus musculus

characteristic: title


MEF controls

text: Fred Hutchinson Cancer Research Center

text: live

text: Generic

text: Mouse embryo Myf-5/MyoD null fibroblasts transduced with control pCLBABE retrovirus were maintained in DMEM with 2ug/ml puromycin and 10% bovine calf serum.

text: Mus musculus

text: Generic sample from Mus musculus


Permafrost

text: NRCC-Biotechnology Research Institute

text: live

text: Generic

text: The soil core (Eur3, Steven et al., 2008) was collected in May 2003 near Eureka, in the Canadian High Arctic (80*0.029 N, 85*50.367 W). Core samples were kept frozen during transport and stored at -20*C until further analysis. Soil subsamples for molecular analyses were collected under sterile conditions from the center of the core. Control of microbiological contamination during coring and subsampling was monitored as previously described (Juck et al., 2005). The active layer and 2 m deep permafrost soils were used in the present study.

text: environmental samples

text: Generic sample from environmental samples


text: live

text: Generic

text: S2 cells

characteristic: cell type

text: male

text: Drosophila melanogaster

text: Drosophila S2 cell

text: WT

characteristic: strain


text: live

text: Generic

text: S2 cells

text: Drosophila melanogaster

text: control (WT)

characteristic: protocol

text: Drosophila S2 cell


text: live

text: Generic

text: S2 cells

text: Drosophila melanogaster

text: msl2 knockdown, RNAi-mediated

text: Drosophila S2 cell


text: live

text: Generic

text: S2 cells

text: Drosophila melanogaster

text: mof knockdown, RNAi-mediated

text: Drosophila S2 cell


text: Genome Institute of Singapore

text: live

text: Generic

text: anti-HA

characteristic: antibody

text: embryonic stem cells

characteristic: dev stage

text: Mus musculus

text: embryonic stem cells


characteristic: External Id

text: Genome Institute of Singapore

text: live

text: Generic

text: anti-HA

text: embryonic stem cells

text: Mus musculus

text: embryonic stem cells

text: Mock ChIP using anti-HA antibody


BCM-DGRP517 dup

text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: Generic

text: Drosophila melanogaster DGRP-517

text: Drosophila melanogaster

text: Sample from Drosophila melanogaster


text: Axtell, Biology, Pennsylvania State University

characteristic: INSDC first public

text: live

text: Generic

text: 8 weeks

characteristic: age

text: Arabidopsis lyrata

text: rosette leaves

text: rosette leaves

characteristic: tissue


C2C12 myoblasts 50% confluency

text: Fred Hutchinson Cancer Research Center

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: C2C12 cells were grown to 50% confluency in DMEM with 10% fetal bovine serum

text: Mus musculus

text: Generic sample from Mus musculus


ITS

text: UC BERKELEY

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Multiplex of ITS1, 5.8s and ITS2 sequences primed from both directions

characteristic: description

text: environmental samples


LSU

text: UC BERKELEY

text: live

text: Generic

characteristic: SRA accession

text: Multiplexed samples of fungi primed with LRORf and LR5f primers

text: environmental samples

characteristic: organism

characteristic: title


text: Experimental Oncology, European Institute of Oncology

text: live

text: Generic

text: Embyonic stem cells

characteristic: cell type

text: Infected with SCR shRNA expression lentivirus

characteristic: genome/variation

text: Mus musculus

text: Embyonic stem cells

characteristic: strain


characteristic: External Id

text: live

text: Generic

characteristic: antibody

text: Embyonic stem cells

text: Infected with Jarid2 shRNA expression lentivirus

text: Mus musculus

text: Embyonic stem cells


C2C12 preimmune

text: Fred Hutchinson Cancer Research Center

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus

text: Generic sample from Mus musculus


text: Duke Institute for Genome Sciences & Policy

text: live

text: Generic

text: Homo sapiens

text: HeLa, human immortal cell line transfected with splicing factor SF2/ASF


Metagenomic Sample

text: J. Craig Venter Institute

text: live

text: Generic

characteristic: Salinity (ppt)

text: Antarctic Territory Claimed by Australia

characteristic: country

text: Metagenomic

text: 68 degrees 24'0S; 78 degrees 11'0E

characteristic: location

text: metagenome

text: Ace Lake, Antarctica

characteristic: sample location

characteristic: sampling site id

characteristic: size fraction (um)

characteristic: temperature (c)

text: Generic sample from metagenome sequence


Metagenomic Sample_1

text: J. Craig Venter Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Metagenomic

characteristic: description

text: 68 degrees 24'0S; 78 degrees 11'0E

text: metagenome

text: Ace Lake, Antarctica

text: Generic sample from metagenome sequence


Metagenomic Sample_1_2

characteristic: External Id

text: J. Craig Venter Institute

text: live

text: Generic

text: Metagenomic

text: 68 degrees 24'0S; 78 degrees 11'0E

text: metagenome

characteristic: organism

text: Ace Lake, Antarctica

text: Generic sample from metagenome sequence

characteristic: title


Metagenomic Sample_1_2_3

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: Salinity (ppt)

text: Metagenomic

text: 68 degrees 24'0S; 78 degrees 11'0E

text: metagenome

text: Ace Lake, Antarctica

text: Generic sample from metagenome sequence


Metagenomic Sample_1_2_3_4

text: J. Craig Venter Institute

text: live

text: Generic

characteristic: country

text: Metagenomic

text: 68 degrees 24'0S; 78 degrees 11'0E

characteristic: location

text: metagenome

text: Ace Lake, Antarctica

characteristic: sample location

text: Generic sample from metagenome sequence


Metagenomic Sample_1_2_3_4_5

text: J. Craig Venter Institute

text: live

text: Generic

text: Metagenomic

text: 68 degrees 24'0S; 78 degrees 11'0E

text: metagenome

text: Ace Lake, Antarctica

characteristic: sampling site id

characteristic: size fraction (um)

characteristic: temperature (c)

text: Generic sample from metagenome sequence


Metagenomic Sample_1_2_3_4_5_6

text: J. Craig Venter Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Metagenomic

text: 68 degrees 24'0S; 78 degrees 11'0E

text: metagenome

text: Ace Lake, Antarctica

text: Generic sample from metagenome sequence


Metagenomic Sample_1_2_3_4_5_6_7

text: J. Craig Venter Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Metagenomic

text: 68 degrees 24'0S; 78 degrees 11'0E

text: metagenome

text: Ace Lake, Antarctica

text: Generic sample from metagenome sequence


Metagenomic Sample_1_2_3_4_5_6_7_8

characteristic: External Id

text: J. Craig Venter Institute

text: live

text: Generic

text: Metagenomic

characteristic: description

text: 68 degrees 24'0S; 78 degrees 11'0E

text: metagenome

characteristic: organism

text: Ace Lake, Antarctica

text: Generic sample from metagenome sequence


Metagenomic Sample_1_2_3_4_5_6_7_8_9

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Metagenomic

text: 68 degrees 24'0S; 78 degrees 11'0E

text: metagenome

text: Ace Lake, Antarctica

text: Generic sample from metagenome sequence

characteristic: title


Metagenomic Sample_1_2_3_4_5_6_7_8_9_10

text: J. Craig Venter Institute

text: live

text: Generic

characteristic: Salinity (ppt)

characteristic: country

text: Metagenomic

text: 68 degrees 24'0S; 78 degrees 11'0E

characteristic: location

text: metagenome

text: Ace Lake, Antarctica

text: Generic sample from metagenome sequence


Prevotella bivia Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: This strain was isolated from the human vaginal cavity

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft89x;121

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Prevotella bivia JCVIHMP010

text: Prevotella bivia JCVIHMP010

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: ATCC 29303

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Prevotella bivia JCVIHMP010


name: Micrococcus luteus; CV39; AJ717368 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: This strain was isolated from human skin

characteristic: description

text: Level 2: High-Quality Draft27.01x;112

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Left arm

text: skin

text: not determined

text: not determined

text: Micrococcus luteus SK58

characteristic: organism

text: Micrococcus luteus SK58

text: Reference Genome

text: not determined

text: BEI HM-114

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Micrococcus luteus SK58

characteristic: title


Peptostreptococcus stomatis Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: Newbler Assembler v. 2.0.00.20

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

characteristic: culture-collection

text: This strain was isolated from the human oral cavity

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft114.5x;74

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Peptostreptococcus stomatis DSM 17678

text: Peptostreptococcus stomatis DSM 17678

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: DSM 17678, CCUG 51858

text: Homo sapiens

text: DSM 17678

text: MIGS Cultured Bacterial/Archaeal sample from Peptostreptococcus stomatis DSM 17678


Peptoniphilus lacramalis Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: description

text: Level 2: High-Quality Draft124x;71

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Vaginal

text: not determined

text: not determined

text: Peptoniphilus lacrimalis 315-B

characteristic: organism

text: Peptoniphilus lacrimalis 315-B

text: Reference Genome

text: not determined

text: BEI HM-134

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Peptoniphilus lacrimalis 315-B


text: Matteo Pellegrini, MCD Biology, UCLA

text: live

text: Generic

text: Sperm

characteristic: cell type

text: wild type

characteristic: genotype

text: Mus musculus

text: Sperm

characteristic: title


characteristic: External Id

text: Matteo Pellegrini, MCD Biology, UCLA

characteristic: INSDC center name

text: live

text: Generic

text: Sperm

text: aid -/-

text: Mus musculus

text: Sperm


text: Matteo Pellegrini, MCD Biology, UCLA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Embyonic stem cell

text: wild type

text: Mus musculus

text: Embryonic stem cells


text: Matteo Pellegrini, MCD Biology, UCLA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Embyonic stem cell

text: Np95 -/-

text: Mus musculus

text: Embryonic stem cells


text: Matteo Pellegrini, MCD Biology, UCLA

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: wild type

text: Mus musculus

text: Fetus

text: Fetus

characteristic: tissue


text: Matteo Pellegrini, MCD Biology, UCLA

text: live

text: Generic

characteristic: SRA accession

text: aid -/-

text: Mus musculus

text: Fetus

text: Fetus


text: Matteo Pellegrini, MCD Biology, UCLA

text: live

text: Generic

text: wild type

text: Mus musculus

text: Placenta

text: Placenta


text: Matteo Pellegrini, MCD Biology, UCLA

text: live

text: Generic

text: aid -/-

text: Mus musculus

text: Placenta

text: Placenta


text: Matteo Pellegrini, MCD Biology, UCLA

text: live

text: Generic

text: Male primordial germ cell

text: wild type

text: Mus musculus

text: Male primordial germ cells


text: Matteo Pellegrini, MCD Biology, UCLA

text: live

text: Generic

text: Male primordial germ cell

text: aid -/-

text: Mus musculus

text: Male primordial germ cells


text: Matteo Pellegrini, MCD Biology, UCLA

text: live

text: Generic

text: Female primordial germ cell

text: wild type

text: Mus musculus

text: Female primordial germ cells


text: Matteo Pellegrini, MCD Biology, UCLA

text: live

text: Generic

text: Female primordial germ cell

text: aid -/-

text: Mus musculus

text: Female primordial germ cells


HMP080-454 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: This strain was isolated from human skin.

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft26x;33

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: skin

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Staphylococcus epidermidis SK135

text: Staphylococcus epidermidis SK135

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-118

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Staphylococcus epidermidis SK135


Bacteroides Genomes #3f Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler Assembler v. 1.1.03.24-64-7

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Partial genome sequencing of Australian HMP09 using 454 technology

text: Level 2: High-Quality Draft67.4x;156

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Bacteroides ovatus SD CMC 3f

characteristic: organism

text: Bacteroides ovatus SD CMC 3f

text: Reference Genome

text: not determined

text: not determined

text: Homo sapiens

characteristic: specific host

text: SD CMC 3f

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bacteroides ovatus SD CMC 3f

characteristic: title


cco and cje

text: Cornell University

text: live

text: Generic

text: Campylobacter

text: Generic sample from Campylobacter


text: Washington University Center for Genome Sciences

text: live

text: Generic

text: Fecal microbiome of monozygotic twin

characteristic: description

text: human gut metagenome

text: Generic sample from Bacteria


MAQC Brain

text: UC Berkeley

text: live

text: Generic

text: RNA sequencing of Ambion's human brain reference from the MAQC project. In two experiments we compared the effect of using the phi X control lane for base-calling. Both these two experiments used the exact same image files to generate base-calls using phi X calibration or auto calibrartion. Note that since the input is commercial RNA, there is no RNA extraction process involved.

text: Homo sapiens

text: Generic sample from Homo sapiens


MAQC UHR

text: UC Berkeley

text: live

text: Generic

text: RNA sequencing of Stratagene's human universal reference RNA (UHR). In two experiments we compared the effect of using the phi X control lane for base-calling. Both these two experiments used the exact same image files to generate base-calls using phi X calibration or auto calibrartion. In for separate experiments, four different library preparations were made and the results sequenced. Note that since the input is commercial RNA, there is no RNA extraction process involved.

text: Homo sapiens

text: Generic sample from Homo sapiens


text: INRA

text: live

text: Generic

text: Plasmodium falciparum

text: Generic sample from Plasmodium falciparum


text: University Leipzig

text: live

text: Generic

text: 454 library generated from terminator exonuclease treated RNA harvested from H. pylori strain 26695 grown to mid-log phase (OD600 = 1.5)

text: Helicobacter pylori 26695

text: Generic sample from Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from untreated total RNA harvested from H. pylori strain 26695 grown to mid-log phase (OD600 = 1.5)

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from terminator exonuclease treated RNA harvested from H. pylori strain 26695 grown to mid-log phase (OD600 = 1.5) and 30 min acid-stress at pH 5.2

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from untreated total RNA harvested from H. pylori strain 26695 grown to mid-log phase (OD600 = 1.5) and 30 min acid-stress at pH 5.2

text: Helicobacter pylori 26695


ML

text: University Leipzig

text: live

text: Generic

text: Solexa RNA-seq library of total RNA harvested from H. pylori grown to mid-log phase (OD600 = 1.5).

text: Helicobacter pylori 26695


AS

text: University Leipzig

text: live

text: Generic

text: Solexa RNA-seq library of total RNA harvested from H. pylori grown to mid log phase and then 30 min acid stress at pH 5.2.

text: Helicobacter pylori 26695


PL

text: University Leipzig

text: live

text: Generic

text: Solexa RNA-seq library of RNA harvested from Helicobacter pylori 26695 grown in cell culture medium.

text: Helicobacter pylori 26695


AG

text: University Leipzig

text: live

text: Generic

text: Solexa RNA-seq library of RNA harvested from Helicobacter pylori 26695 grown in the presence of responsive gastric epithelial AGS cells.

text: Helicobacter pylori 26695


HU

text: University Leipzig

text: live

text: Generic

text: Solexa RNA-seq library of RNA harvested from Helicobacter pylori 26695 grown in the presence of non-responsive Huh7 liver cells.

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from untreated total RNA harvested from H. pylori strain 26695 grown in contact with non-responsive Huh7 liver cells.

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from terminator exonuclease treated RNA harvested from H. pylori strain 26695 grown in contact with non-responsive Huh7 liver cells.

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from untreated total RNA harvested from H. pylori strain 26695 grown in contact with responsive gastric epithelial AGS cells.

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from terminator exonuclease treated RNA harvested from H. pylori strain 26695 grown in contact with responsive gastric epithelial AGS cells.

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from untreated total RNA harvested from H. pylori strain 26695 grown in cell culture medium.

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from terminator exonuclease treated total RNA harvested from H. pylori strain 26695 grown in cell culture medium.

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from untreated total RNA harvested from H. pylori strain 26695 grown to mid-log phase (OD600 = 1.5) (1st replicate).

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from terminator exonuclease treated RNA harvested from H. pylori strain 26695 grown to mid-log phase (OD600 = 1.5) (1st replicate).

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from untreated total RNA harvested from H. pylori strain 26695 grown to mid-log phase (OD600 = 1.5) (2nd replicate).

text: Helicobacter pylori 26695

text: Generic sample from Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated from terminator exonuclease treated RNA harvested from H. pylori strain 26695 grown to mid-log phase (OD600 = 1.5) (2nd replicate).

text: Helicobacter pylori 26695


text: University Leipzig

text: live

text: Generic

text: 454 library generated in the presence of actinomycin D from terminator exonuclease treated total RNA (1st replicate) harvested from H. pylori strain 26695 grown to mid-log phase (OD600 = 1.5).

text: Helicobacter pylori 26695


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Mix of DNA from 10 organisms with complete genome assemblies

text: mixed DNA library

text: Generic sample from mixed DNA library


U87MG Glioblastoma Cell-line

text: University of California, Los Angeles

text: live

text: Generic

text: U87MG is a long established cell line derived from a human grade IV glioma that has been used in over 1,700 publications as of the beginning of year 2010. A wide range of biological information is already known about this cell line. The U87MG cell line is known to have a highly aberrant genomic structure based on karyotyping, SKY, and FISH. However, these methods neither provide the resolution required to visualize the precise breakpoint of a translocation event, nor are they generally capable of identifying genomic microdeletions (deletions on the order of a megabase or less in size) in a whole genome survey of structural variation. Therefore, these more difficult to resolve mutations have yet to be assessed and it is the goal of this sequencing study to assess them.

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Center for Comparative Genomics and Bioinformatics

text: live

text: Generic

text: nuclear DNA from iGubi, as Bushman from the Tuu tribe of Namibia

text: Homo sapiens

text: male

characteristic: sex

text: blood

characteristic: tissue

text: Southern African Bushman


characteristic: External Id

text: live

text: Generic

text: Namibian Bushman

text: Homo sapiens

text: male

text: blood

text: Southern African Bushman


ABT

characteristic: INSDC center name

text: live

text: Generic

text: nuclear DNA from Archbishop Tutu

text: Homo sapiens

text: male

text: blood

text: Southern African Bantu


text: Cornell University

characteristic: INSDC first public

text: live

text: Generic

text: This is a Swine sample collected in 2001 in the USA

text: Campylobacter coli

text: Generic sample from Campylobacter coli


text: Cornell University

characteristic: INSDC last update

text: live

text: Generic

text: This a human sample (gastrointestinal) collected in 2005 in Poland

text: Campylobacter coli

text: Generic sample from Campylobacter coli


pooled sample

text: Center for Genomics and Bioinformatics, Indiana University

characteristic: INSDC secondary accession

text: live

text: Generic

text: To avoid possible contamination from their food, we collected samples as follows. We dissected head and three thoracic segments from our larval samples. Instead of dissecting head and thoracic segments from pupae, we used the whole body. Late pupae were transferred to clean, humid chamber to let the adults emerge and not to let them consume any cow dung. To enrich the pool of expressed genes with various classes of transcripts, we included the major stages of beetle late development: mid 3rd (last) inster larva, late 3rd instar larva, prepupa within 24hrs and prepupa between 36 and 48hrs, pupa within 24hrs after pupation, between 36 and 48hrs after pupation, mid pupa (7 and 9 days after pupation), and late pupa (12 days after pupation), adults 4 days after molt. Each stage includes two males and two females except for pupa day7 (one female) and day 9 (one male). In total, we used 32 animals to extract total RNA. To enrich the pool of expressed genes with rare transcripts, we normalized the cDNA library.

text: Onthophagus taurus

text: Generic sample from Onthophagus taurus


text: Biochimie, Université de Sherbrooke

text: live

characteristic: INSDC status

text: Generic

text: Siberian C

characteristic: cultivar

text: peach latent mosaic viroid (PLMVd)

characteristic: infection

text: Prunus persica

text: leaf tree, peach latent mosaic viroid infected


text: Wilhelmina Children's Hospital, University Medical Center Utrecht

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

text: blood

text: blood


text: Yu, Medicine - Hem/Onc, Northwestern University

text: live

text: Generic

text: Estrogen Receptor (ER)

characteristic: antibody

characteristic: cell line

text: estrogen-responsive breast cancer

characteristic: cell type

text: Homo sapiens

characteristic: organism

text: hormone starved for 3 days, treated with 1% ethanol for 45 minutes

characteristic: treatment variable


text: live

text: Generic

text: Estrogen Receptor (ER)

text: estrogen-responsive breast cancer

text: Homo sapiens

characteristic: title

text: hormone starved for 3 days, treated with 10 nM β-estradiol for 45 minutes


characteristic: External Id

text: Genetics, UNC

text: live

text: Generic

text: Homo sapiens

text: pancreatic islet cells

text: Purified pancreatic islets

characteristic: tissue

text: Islet_FAIRE-seq 3


text: Genetics, UNC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: pancreatic islet cells

text: Purified pancreatic islets

text: Islet_FAIRE-seq 1


text: Genetics, UNC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

text: pancreatic islet cells

text: Purified pancreatic islets

text: Islet_FAIRE-seq 2


text: TH Wildau

text: live

characteristic: INSDC status

text: Generic

text: Rattus norvegicus

text: Generic sample from Rattus norvegicus


LS-viruliferous

text: Institute of Microbiology, Chinese Academy of Sciences

text: live

text: Generic

text: The sample is rice stripe virus infected (viruliferous) Laodelphax striatellus

characteristic: description

text: Laodelphax striatellus

text: Generic sample from Laodelphax striatellus


LS-naive

text: live

text: Generic

characteristic: NCBI submission model

text: This sample is naive Laodelphax striatellus that is not infected with rice stripe virus (RSV)

text: Laodelphax striatellus


text: P.J. Green - B.C. Meyers, Plant and Soil Sciences Department, University of Delaware

text: live

text: Generic

characteristic: NCBI submission package

text: Miscanthus x giganteus

text: Leaves

text: leaves

text: Small RNAs from Miscanthus leaves


text: live

text: Generic

characteristic: SRA accession

text: Miscanthus x giganteus

text: Flowers

text: flower

text: Small RNAs from Miscanthus flowers


text: live

text: Generic

text: Miscanthus x giganteus

text: Rhizomes

text: rhizomes (apical tip portion)

text: Small RNAs from Miscanthus rhizomes


text: William L. Stanford, IBBME, University of Toronto

text: live

text: Generic

text: Undifferentiated mouse embryonic stem cells

text: PCL2 (MTF2)

characteristic: chip antibody

text: Mus musculus

characteristic: strain


text: Beijing Institute of Genomics Chinese Acad of Sci - Key Lab

text: live

text: Generic

text: 10 weeks male BABL/c mouse

text: Mus musculus

text: Generic sample from Mus musculus


text: Ronald Evans, Gene Expression Lab, Salk Institute

text: live

text: Generic

text: primary bone marrow-derived macrophages

characteristic: cell type

text: 10 month old male

characteristic: donor age

text: Mus musculus

text: primary bone marrow-derived macrophages

text: unstimulated macrophages

characteristic: treatment


text: live

text: Generic

text: primary bone marrow-derived macrophages

text: IgG

text: 10 month old male

text: Mus musculus

characteristic: organism

text: primary bone marrow-derived macrophages

characteristic: title

text: unstimulated macrophages


characteristic: External Id

text: live

text: Generic

text: primary bone marrow-derived macrophages

text: n/a (input_DNA)

text: 10 month old male

text: Mus musculus

text: primary bone marrow-derived macrophages

text: unstimulated macrophages


text: Iowa State University

characteristic: INSDC center name

text: live

text: Generic

text: 14 days after planting

characteristic: age

characteristic: genotype

text: Zea mays

text: Shoot apical meristem

text: 14 day old

characteristic: stage


text: Plant Sciences, University of Cambridge

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: ecotype

text: Arabidopsis thaliana

text: wildtype

text: Whole aerial parts (leaf tissue)

characteristic: tissue


text: Plant Sciences, University of Cambridge

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Arabidopsis thaliana

text: rdr6-15 knockout

text: Whole aerial parts (leaf tissue)


text: Oregon St Univ - Center for Genome Research & Biocomputing

text: live

text: Generic

text: Brachypodium distachyon

text: Generic sample from Brachypodium distachyon


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: bacterium S5

characteristic: description

text: Desulfurispirillum indicum S5

characteristic: strain

text: Generic sample from Desulfurispirillum indicum S5


characteristic: GOLD Stamp ID

text: Gram+

characteristic: Gram Staining

characteristic: Greengenes ID

text: live

text: Generic

text: Sporulating

characteristic: Sporulation

text: free living

characteristic: biotic relationship

text: Keywords: GSC:MIGS:2.1

text: Fresh water, Soil

characteristic: environment

characteristic: investigation type

text: Micromonospora sp. L5

characteristic: organism

text: Micromonospora sp L5

characteristic: project name

text: aerobe

text: Mesophile

characteristic: temperature range

text: Micromonospora sp. L5, complete genome.

characteristic: title


CHO cell line

characteristic: External Id

text: Boehringer Ingelheim Pharma GmbH & Co KG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Cricetulus griseus

text: Generic sample from Cricetulus griseus


Horseweed transcriptome (454)

text: Department of Plant Sciences, University of Tennessee Knoxville

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Erigeron canadensis

text: Generic sample from Conyza canadensis


text: Broad Institute

text: live

text: Generic

text: Dorea sp. 4_1_36FAA

characteristic: sample name

characteristic: strain

text: Generic sample from Dorea sp. 4_1_36FAA


WL-A

text: Uppsala University

text: live

text: Generic

text: White Leghorn chicken from research Line 13 at SLU, 11 male chickens.

characteristic: description

text: Gallus gallus gallus

text: Generic sample from Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: White Leghorn chicken from research Line 13 at SLU.

text: Gallus gallus gallus


WL-B

text: Uppsala University

text: live

text: Generic

text: White Leghorn chicken from a commercial line, 8 male chickens.

text: Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: White Leghorn chicken from a commercial line.

text: Gallus gallus gallus


OS

text: Uppsala University

text: live

text: Generic

text: Obsese strain chicken, 10 male chickens.

text: Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: Obsese strain chicken.

text: Gallus gallus gallus


RIR

text: Uppsala University

text: live

text: Generic

text: Rhode Island red chicken from the AvianDiv panel, provided by Hubbard-ISA, 8 male.

text: Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: Rhode Island red chicken from the AvianDiv panel, provided by Hubbard-ISA.

text: Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: Commerical broiler chicken from the Ross 308 line, 10 male chickens.

text: Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: Commerical broiler chicken from the Ross 308 line.

text: Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: Commerical broiler chicken from the AvianDiv panel, provided by Hubbard-ISA, 10 female chickens.

text: Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: Commerical broiler chicken from the AvianDiv panel, provided by Hubbard-ISA.

text: Gallus gallus gallus


High

text: Uppsala University

text: live

text: Generic

text: Chicken from the VT high growth selection line, 7 male and 4 female.

text: Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: Chicken from the VT high growth selection line.

text: Gallus gallus gallus


Low

text: Uppsala University

text: live

text: Generic

text: Chicken from the VT low growth selection line, 7 male and 4 female.

text: Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: Chicken from the VT low growth selection line.

text: Gallus gallus gallus


RJF

text: Uppsala University

text: live

text: Generic

text: Red junglefowl from a Swedish zoo, 8 male chickens.

text: Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: Red junglefowl from a Swedish zoo.

text: Gallus gallus gallus


text: Uppsala University

text: live

text: Generic

text: Red junglefowl UCD-001 from U.C. Davis. This is the individual used for the genome reference sequence.

text: Gallus gallus gallus


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Thermocrinis albus DSM 14484

text: Thermocrinis albus DSM 14484

text: DSM 14484

text: Generic sample from Thermocrinis albus DSM 14484


BGI-Saqqaq

text: Beijing Genomics Institute

text: live

text: Generic

text: Greenland: Saqqaq Culture site Qeqertasussuk, north-western Greenland

characteristic: country

text: ancient human hair tufts excavated directly from culturally deposited permafrozen sediments at Qeqertasussuk, Greenland

text: Homo sapiens

characteristic: sample age

text: male

characteristic: sex

text: hair

characteristic: tissue

text: 4000 year old hair tuft of male individual from extinct Saqqaq Palaeo-Eskimo culture


EBV SHORT library

text: Medical University Innsbruck

text: live

text: Generic

text: Noncodig RNAs (18-500 nucelotides length) of non-infected B cells were subtracted from EBV-immortalized cells by employing SHORT (Subtractive Hybridization Of non-coding RNA Transcripts). EBV-induced cDNA, obtained by SHORT, was PCR amplified, cloned and deep sequenced (Mrazek et al., 2007).

text: Human herpesvirus 4 strain B95-8

characteristic: organism

text: Generic sample from Human herpesvirus 4 (strain B95-8)

characteristic: title


EBV SHORT library_1

characteristic: External Id

text: Medical University Innsbruck

characteristic: INSDC center name

text: live

text: Generic

text: Human herpesvirus 4 strain B95-8


text: DOE-CSP 2007

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Gram-

characteristic: Gram Staining

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Nonsporulating

characteristic: Sporulation

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Keywords: GSC:MIGS:2.1

text: Host, Rhizosphere, Rhizosphere-colonizing

characteristic: environment

characteristic: investigation type

text: Motile

characteristic: motility

text: Burkholderia sp. CCGE1003

text: Burkholderia sp. CCGE1003

characteristic: project name

text: facultative

text: Mesophile

characteristic: temperature range

text: Burkholderia sp. CCGE1003 chromosome 2, complete sequence.


text: National Center for Genome Resources

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: description

text: Medicago truncatula

characteristic: organism

text: Generic sample from Medicago truncatula


PZ

characteristic: External Id

text: University of Notre Dame

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Adult females were collected 2 populations of P. zelicaon, near the latitudinal center of the species distribution (within 50 km of Medford, Oregon). Eggs laid by these females were hatched under conditions characteristic of native habitats in a greenhouse and then moved to Conviron growth chambers at the University of Notre Dame. Multiple individuals of each larval instar were collected through the final instar before pupation. Individuals of the 3rd and 4th instars were exposed to a heat stress of 35 degrees for 60 minutes and a cold stress of 0 degrees for 120 minutes. Individuals in the 3rd and 5th instars of were exposed to a desiccation agent (silica gel) for 120 minutes. In addition, some of the collected larvae of P. zelicaon were fed Petrsolinum crispum and others were fed Lomatium utriculatum. The former contains higher concentrations of linear furanocoumarins, a defensive compound against herbivores, than the latter. After treatment, larvae were frozen in liquid nitrogen and stored at -80 degrees C. \textcolor{red}{Whole-body} RNA from these \textcolor{red}{frozen} individuals was extracted using an RNA Easy kit (QIAGEN Inc.) \textcolor{red}{over a period of two months.} \textcolor{red}{Prior to library construction, pooling was done by adjusting sample contributions to equimolar amounts of total RNA per individual.} In total, 53 larvae of \textit{E. propertius} and 61 larvae of \textit{P. zelicaon} were pooled prior to sequencing, representing a minimum of 11 and a maximum of 48 wild mothers in \textit{E. propertius} and exactly 5 wild mothers for \textit{P. zelicaon}.

text: Papilio zelicaon

text: Generic sample from Papilio zelicaon

characteristic: title


text: University of Florida

characteristic: INSDC last update

text: live

text: Generic

characteristic: strain

text: Generic sample from Escherichia coli str. K-12 substr. MG1655


text: University of Florida

text: live

text: Generic

text: Escherichia coli str. K-12 substr. MG1655


text: DOEM 2007

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Gram+

characteristic: Gram Staining

characteristic: Greengenes ID

text: live

text: Generic

text: Nonsporulating

characteristic: Sporulation

text: Yes

characteristic: Type Strain

text: free living

characteristic: biotic relationship

text: Rod-shaped

characteristic: cell shape

text: Keywords: GSC:MIGS:2.1

text: Sludge

characteristic: environment

characteristic: investigation type

text: Anaerobic activated sludge of molasses wastewater in a continuous stirred-tank reactor

characteristic: isolation site

text: anaerobic activated sludge of molasses wastewater in a continuous stirred-tank reactor

characteristic: isolation-source

text: Motile

text: Ethanoligenens harbinense YUAN-3

text: 3.5 - 9.0

characteristic: ph

text: Ethanoligenens harbinense YUAN-3T, DSM 18485

text: DSM 18485, JCM 12961, CGMCC 1.5033

text: obligate anaerobe

text: 20 - 44C

characteristic: temperature optimum

text: Mesophile

text: Ethanoligenens harbinense YUAN-3, complete genome.

text: type strain of Ethanoligenens harbinense

characteristic: type material


characteristic: External Id

text: Wenzhou Medical College, China

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: pooled sequencing of plasmids from 110 strains of Klebsiella pneumoniae isolated from 2002 to 2006

characteristic: description

text: Klebsiella pneumoniae

characteristic: organism

text: Generic sample from Klebsiella pneumoniae

characteristic: title


text: Wenzhou Medical College, China

text: live

text: Generic

text: Pooled sequencing of plasmids from 96 strains of Klebsiella pneumoniae isolated from 2007 to 2008

text: Klebsiella pneumoniae


Goat genome

text: Sandor Proteomics

text: live

text: Generic

text: Capra hircus

text: Generic sample from Capra hircus


Aphis glycines BI whole body

text: Case Western Reserve University

text: live

text: Generic

text: The sample is mRNA from the whole body of soybean aphid Aphis glycines BI biotype.

text: Aphis glycines

text: Generic sample from Aphis glycines


name: Aphis glycines BII reduced representation

text: Case Western Reserve University

text: live

text: Generic

text: This is a reduced representation genomic sample from Aphis glycines BII biotype.

text: Aphis glycines

text: Generic sample from Aphis glycines


KFFL GW study

text: Spring Warming 2005

characteristic: AACCAACC

text: Fall Control 2005

characteristic: AACCAAGG

text: Spring Control 2006

characteristic: AACCATCG

text: Spring Control 2005

characteristic: AACCATGC

text: Fall Warming 2005

characteristic: AACGTTGC

text: Spring Warming 2006

characteristic: AAGCAACG

text: Fall Warming 2004

characteristic: AAGCATCC

text: Fall Control 2004

characteristic: AAGCCGAA

text: University of Oklahoma

text: live

text: Generic

text: soil metagenome

text: Effect of warming and drought on grassland microbial communities


characteristic: External Id

text: Washington University, Genome Sequencing Center

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Coriell GM04272

text: Pongo abelii

text: Generic sample from Pongo abelii


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Coriell PR01109

text: Pongo abelii

text: Generic sample from Pongo abelii


text: live

text: Generic

characteristic: SRA accession

text: Coriell PR01109; Studbook #1044 PPAJ-454_RNA_070831_Tube1

characteristic: description

text: Pongo abelii

characteristic: organism

text: Sumatran orangutan

characteristic: title


text: live

text: Generic

text: Pongo abelii

text: Generic sample from Pongo abelii


CCAP

text: Baylor College of Medicine

text: live

text: Generic

text: Ceratitis capitata

text: Ceratitis capitata

text: ISPRA

characteristic: strain

text: Generic sample from Ceratitis capitata


text: Kim, Bioinformatics, University of Michigan

text: live

text: Generic

text: Caenorhabditis elegans

characteristic: phenotype

text: eri-1 young adult

text: young adult

characteristic: stage

text: eri-1_young_adult_small_RNA (454)


text: live

text: Generic

text: Caenorhabditis elegans

text: glp-4 young adult

text: young adult

text: glp-4_young_adult_small_RNA (454)


text: live

text: Generic

text: Caenorhabditis elegans

text: N2 (Bristol)

text: N2 young adult

text: young adult

text: N2_young_adult_small_RNA (454)


text: live

text: Generic

text: Caenorhabditis elegans

text: him-8 sperm

text: sperm

characteristic: tissue

text: him-8_sperm_small_RNA (454)


text: live

text: Generic

text: Caenorhabditis elegans

text: fer-1 oocyte

text: oocyte

text: fer-1_oocyte_small_RNA (454)


text: live

text: Generic

text: Caenorhabditis elegans

text: N2 (Bristol)

text: N2 embryos

text: embryo

text: N2_embryo_small_RNA (Illumina)


text: live

text: Generic

text: Caenorhabditis elegans

text: eri-1 young adult

text: young adult

text: eri-1_young_adult_small_RNA (Illumina)


text: live

text: Generic

text: Caenorhabditis elegans

text: glp-4 young adult

text: young adult

text: glp-4_young_adult_small_RNA (Illumina)


text: live

text: Generic

text: Caenorhabditis elegans

text: N2 (Bristol)

text: N2 mixed stage

text: mixed stage

text: N2_mixed_stage_small_RNA (Illumina)


text: live

text: Generic

text: Caenorhabditis elegans

text: him-8 sperm

text: sperm

text: him-8_sperm_small_RNA (Illumina)


text: live

text: Generic

text: Caenorhabditis elegans

text: fer-1 oocyte

text: oocyte

text: fer-1_oocyte_small_RNA (Illumina)


text: The Key Sericultural Laboratory of Agricultural Ministry, College of Biotechnology, Southwest University

text: live

text: Generic

text: Bombyx mori

text: of 5th-instar day-3 larvae

characteristic: passages

text: whole silkworm body (whole body)

text: whole silkworm body

text: Whole body_primary results


characteristic: External Id

text: live

text: Generic

text: Bombyx mori

text: from 5th-instar day-3 larvae

text: anterior silk glands

text: anterior silk glands

text: Anterior silkgland_primary results


characteristic: INSDC center name

text: live

text: Generic

text: Bombyx mori

text: from 5th-instar day-3 larvae

text: posterior silk glands

text: Posterior silkgland_primary results

text: posterior silk glands

characteristic: wtissue


text: Friedrich Miescher Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Schizosaccharomyces pombe

text: wt

text: Wild-type


text: Friedrich Miescher Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Schizosaccharomyces pombe


text: Hernandez/Herr, CIG, University of Lausanne

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: RPC4:CS682 (#6)

characteristic: antibody

characteristic: cell type

text: Homo sapiens


text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

characteristic: organism

characteristic: title


text: live

text: Generic

text: Homo sapiens


text: University of Toronto

text: live

text: Generic

text: hMSC cells

text: Homo sapiens

text: hMSC cells mock-depleted using a control siRNA

text: siControl


text: University of Toronto

text: live

text: Generic

text: hMSC cells

text: Homo sapiens

text: hMSC cells depleted of MRG15 using specific siRNA


text: University of Toronto

text: live

text: Generic

text: hMSC cells

text: Homo sapiens

text: hMSC cells depleted of PTB using specific siRNA

text: siPTB


text: University of Toronto

text: live

text: Generic

text: hMSC cells

text: Homo sapiens

text: hMSC cells depleted of SETD2 using specific siRNA


D.mel. polyA mixed embryo

text: Berkeley Drosophila Genome Project

text: live

text: Generic

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


text: Bioinformatics center, Beijing Genomics Institute at Shenzhen

text: live

text: Generic

text: Aspergillus oryzae

text: cell in solid culture

characteristic: strain

text: Solid culture control RNA-Seq


text: live

text: Generic

text: Aspergillus oryzae

text: cell in liquid culture

text: Liquid culture control RNA-Seq


text: live

text: Generic

text: Aspergillus oryzae

text: cell under ER stress in solid culture

text: Solid culture ER stress RNA-seq


text: live

text: Generic

text: Aspergillus oryzae

text: cell under ER stress in liquid culture

text: Liquid culture ER stress RNA-Seq


text: James C. Carrington, Donald Danforth Plant Science Center

text: live

text: Generic

text: Plants were grown in long-day conditions (16 h days/8 h nights) at 25°C for 28-35 days

characteristic: growth conditions

text: Brachypodium distachyon

text: Oregon State University

characteristic: source

text: panicles

text: panicles

characteristic: tissue


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Abiotrophia defectiva strain ATCC 49176

characteristic: description

text: Abiotrophia defectiva ATCC 49176

text: ATCC 49176

text: Generic sample from Abiotrophia defectiva ATCC 49176


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.ba

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Actinomyces odontolyticus strain F0309

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 3: Improved-High-Quality Draft46.5x;97

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: airways

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Schaalia odontolytica F0309

text: Actinomyces odontolyticus F0309

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-94

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Actinomyces odontolyticus F0309


characteristic: External Id

text: Bioinformatics Core Facility, Wellcome Centre for Cell Biology, University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rdp1::KanMX6 ars1::pREP1GFP-HP-LEU2 arg3::ura4-GFP arg11::HphMX6 ade6-210/216 leu1-32 ura4-D18

characteristic: genotype

text: small RNA

characteristic: molecule

text: Schizosaccharomyces pombe

characteristic: organism

text: polyacrylamide gel purification

characteristic: purification

characteristic: strain

characteristic: title


text: live

text: Generic

text: ars1::pREP1GFP-HP-LEU2 arg3::ura4-GFP arg11::HphMX6 his3-D1 leu1-32 ura4-D18 ade6-210/216

text: small RNA

text: Schizosaccharomyces pombe

text: polyacrylamide gel purification


text: Washington University, Genome Sequencing Center

text: live

text: MIGS.ba

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Actinomyces sp. oral taxon 848 strain F0332

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 3: Improved-High-Quality Draft28.7x;73

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Actinomyces sp. oral taxon 848 F0332

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-90

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Actinomyces sp. oral taxon 848 str. F0332


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.0-PreRelease-04/10/2008

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: culture-collection

text: Anaerococcus hydrogenalis GIFU 7662

text: Level 2: High-Quality Draft86.8x;52

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Anaerococcus hydrogenalis DSM 7454

characteristic: organism

text: Anaerococcus hydrogenalis DSM 7454

text: Reference Genome

text: not determined

text: DSM 7454, ATCC 49630, JCM 7635

text: Homo sapiens

characteristic: specific host

text: DSM 7454

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Anaerococcus hydrogenalis DSM 7454

characteristic: title


text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Bacteroides sp. CRE21

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft16.3x;525

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Bacteroides cellulosilyticus DSM 14838

text: Bacteroides cellulosilyticus DSM 14838

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: DSM 14838, CCUG 44979

text: Homo sapiens

text: DSM 14838

text: MIGS Cultured Bacterial/Archaeal sample from Bacteroides cellulosilyticus DSM 14838


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: culture-collection

text: Bacteroides coprophilus JCM 18818

text: Level 2: High-Quality Draft16.4x;284

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Phocaeicola coprophilus DSM 18228 = JCM 13818

characteristic: organism

text: Bacteroides coprophilus DSM 18228

text: Reference Genome

text: not determined

characteristic: sop

text: DSM 18228, JCM 18818

text: Homo sapiens

characteristic: specific host

text: DSM 18228

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bacteroides coprophilus DSM 18228

text: type strain of Bacteroides coprophilus

characteristic: type material


text: live

text: Generic

text: Bacteroides dorei JCM 13471

characteristic: description

text: Phocaeicola dorei DSM 17855

text: DSM 17855

text: Generic sample from Bacteroides dorei DSM 17855

characteristic: title

text: type strain of Bacteroides dorei


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Bacteroides eggerthii ATCC 27754

text: Bacteroides eggerthii DSM 20697

text: DSM 20697

text: Generic sample from Bacteroides eggerthii DSM 20697


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Bacteroides finegoldii JCM 13345

characteristic: estimated size

characteristic: feature

text: Level 3: Improved-High-Quality Draft17.5x;339

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Bacteroides finegoldii DSM 17565

text: Bacteroides finegoldii DSM 17565

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: DSM 17565, JCM 13345

text: Homo sapiens

text: DSM 17565

text: MIGS Cultured Bacterial/Archaeal sample from Bacteroides finegoldii DSM 17565


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Bacteroides pectinophilus strain ATCC 43243

characteristic: description

text: [Bacteroides] pectinophilus ATCC 43243

characteristic: organism

text: ATCC 43243

characteristic: strain

text: Generic sample from [Bacteroides] pectinophilus ATCC 43243

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Bifidobacterium angulatum strain DSM 20098

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 3: Improved-High-Quality Draft27.9x;40

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: not determined

text: not determined

text: Bifidobacterium angulatum DSM 20098

text: Reference Genome

text: not determined

characteristic: sop

text: DSM 20098, ATCC 27535

text: Homo sapiens

characteristic: specific host

text: DSM 20098

text: MIGS Cultured Bacterial/Archaeal sample from Bifidobacterium angulatum DSM 20098 = JCM 7096


characteristic: External Id

text: Washington University, Genome Sequencing Center

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.00.20

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Bifidobacterium breve strain DSM 20213

characteristic: description

text: Level 3: Improved-High-Quality Draft25.5x;117

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

characteristic: organism

text: Bifidobacterium breve DSM 20213

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: DSM 20213, ATCC 15700, NCTC 11815

text: Homo sapiens

text: DSM 20213

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bifidobacterium breve DSM 20213 = JCM 1192


text: Cuppen lab, Genome Biology, Hubrecht Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rattus norvegicus

text: BN-Lx

text: brain

characteristic: tissue

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: Rattus norvegicus

text: BN-Lx

text: liver


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Rattus norvegicus

text: BN-Lx

text: spleen


text: live

text: Generic

characteristic: SRA accession

text: Rattus norvegicus

text: BN-Lx

text: heart


text: live

text: Generic

text: Rattus norvegicus

text: BN-Lx

text: testis


text: live

text: Generic

text: Rattus norvegicus

text: BN-Lx

text: kidney


text: live

text: Generic

text: Rattus norvegicus

text: SHR

text: brain


text: live

text: Generic

text: Rattus norvegicus

text: SHR

text: liver


text: live

text: Generic

text: Rattus norvegicus

text: SHR

text: spleen


text: live

text: Generic

text: Rattus norvegicus

text: SHR

text: heart


text: live

text: Generic

text: Rattus norvegicus

text: SHR

text: testis


text: live

text: Generic

text: Rattus norvegicus

text: SHR

text: kidney


text: live

text: Generic

text: Rattus norvegicus

text: BN-Lx

text: liver

text: BN-Lx_adult_male_whole_liver, replicate 2


text: live

text: Generic

text: Rattus norvegicus

text: BN-Lx

text: liver

text: BN-Lx_adult_male_whole_liver, replicate 3


text: live

text: Generic

text: Rattus norvegicus

text: SHR

text: liver

text: SHR_adult_male_whole_liver, replicate 2


text: live

text: Generic

text: Rattus norvegicus

text: SHR

text: liver

text: SHR_adult_male_whole_liver, replicate 3


text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Bifidobacterium catenulatum strain DSM 16992

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft55.8x;31

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043

text: Bifidobacterium catenulatum DSM 16992

text: Reference Genome

text: not determined

characteristic: sop

text: DSM 16992, ATCC 27539, CIP 104175, DSM 20103

text: Homo sapiens

characteristic: specific host

text: DSM 16992

text: MIGS Cultured Bacterial/Archaeal sample from Bifidobacterium catenulatum DSM 16992 = JCM 1194


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.00.20

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Bifidobacterium pseudocatenulatum LMG 10505

text: Level 3: Improved-High-Quality Draft50.7x;37

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505

characteristic: organism

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: DSM 20438, ATCC 27919, LMG 10505, JCM 1200

text: Homo sapiens

text: DSM 20438

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200

characteristic: title


text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Ruminococcus hansenii DSM 20583

characteristic: description

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 3: Improved-High-Quality Draft21.5x;110

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Blautia hansenii DSM 20583

text: Blautia hansenii VPI C7-24, DSM 20583

text: Reference Genome

text: not determined

characteristic: sop

text: DSM 20583, ATCC 27752

text: Homo sapiens

text: DSM 20583

text: MIGS Cultured Bacterial/Archaeal sample from Blautia hansenii DSM 20583


characteristic: External Id

text: Washington University, Genome Sequencing Center

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Clostridium-like sp. I-52

text: Marvinbryantia formatexigens DSM 14469

characteristic: organism

text: DSM 14469

characteristic: strain

text: Generic sample from Marvinbryantia formatexigens DSM 14469


text: live

text: Generic

text: Catenibacterium mitsuokai JCM 10609

characteristic: description

text: Catenibacterium mitsuokai DSM 15897

text: DSM 15897

text: Generic sample from Catenibacterium mitsuokai DSM 15897

characteristic: title


text: live

text: Generic

text: Catonella morbi strain ATCC 51271

text: Catonella morbi ATCC 51271

text: ATCC 51271

text: Generic sample from Catonella morbi ATCC 51271


text: live

text: Generic

text: Citrobacter sp. ATCC 29220

text: Citrobacter youngae ATCC 29220

text: ATCC 29220

text: Generic sample from Citrobacter youngae ATCC 29220


text: live

text: MIGS.ba

text: Newbler v. 2.0.0-PostRelease-10/28/2008

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Clostridium sp. DSM 15981

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft14.3x;610

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: [Clostridium] asparagiforme DSM 15981

text: Clostridium asparagiforme DSM 15981

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: DSM 15981, CCUG 48471

text: Homo sapiens

characteristic: specific host

text: DSM 15981

text: MIGS Cultured Bacterial/Archaeal sample from Clostridium asparagiforme DSM 15981


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Clostridium hathewayi strain DSM 13479

characteristic: description

text: Level 2: High-Quality Draft14.2x;1294

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Hungatella hathewayi DSM 13479

characteristic: organism

text: Clostridium hathewayi DSM 13479

text: Reference Genome

text: not determined

characteristic: sop

text: DSM 13479, CCUG 43506

text: Homo sapiens

text: DSM 13479

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Clostridium hathewayi DSM 13479


text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Clostridium hylemonae TN-271

characteristic: estimated size

characteristic: feature

text: Level 3: Improved-High-Quality Draft18.9x;118

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: [Clostridium] hylemonae DSM 15053

text: Clostridium hylemonae DSM 15053

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: DSM 15053, JCM 10539, CIP 106689, CCUG 45367

text: Homo sapiens

text: DSM 15053

text: MIGS Cultured Bacterial/Archaeal sample from Clostridium hylemonae DSM 15053

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Clostridium sp. M62/1

characteristic: description

text: Clostridium sp. M62/1

characteristic: organism

text: Generic sample from Clostridium sp. M62/1


text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Clostridium methylpentosum R2

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft22.2x;146

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: [Clostridium] methylpentosum DSM 5476

text: Clostridium methylpentosum R2, DSM 5476

text: Reference Genome

text: not determined

characteristic: sop

text: DSM 5476, ATCC 43829

text: Homo sapiens

characteristic: specific host

text: DSM 5476

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Clostridium methylpentosum DSM 5476


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. post-1.1.03-Dev_01252007

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Collinsella intestinalis RCA56-68

characteristic: description

text: Level 3: Improved-High-Quality Draft37.2x;94

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Collinsella intestinalis DSM 13280

text: Collinsella intestinalis DSM 13280

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: DSM 13280, JCM 10643

text: Homo sapiens

text: DSM 13280

text: MIGS Cultured Bacterial/Archaeal sample from Collinsella intestinalis DSM 13280

characteristic: title


text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Collinsella stercoris strain DSM 13279

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft32.9x;273

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Collinsella stercoris DSM 13279

characteristic: organism

text: Collinsella stercoris DSM 13279

text: Reference Genome

text: not determined

characteristic: sop

text: DSM 13279, JCM 10641

text: Homo sapiens

characteristic: specific host

text: DSM 13279

text: MIGS Cultured Bacterial/Archaeal sample from Collinsella stercoris DSM 13279


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Coprococcus comes strain ATCC 27758

characteristic: description

text: Coprococcus comes ATCC 27758

text: ATCC 27758

characteristic: strain

text: Generic sample from Coprococcus comes ATCC 27758


text: Washington University, Genome Sequencing Center

text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Corynebacterium matruchotii strain ATCC 33806

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft24.6x;58

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Gingival crevices

text: oral

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Corynebacterium matruchotii ATCC 33806

text: Corynebacterium matruchotii ATCC 33806

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: ATCC 33806, CCUG 47160

text: Homo sapiens

text: ATCC 33806

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium matruchotii ATCC 33806

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Desulfovibrio piger DSM 749

characteristic: description

text: Desulfovibrio piger ATCC 29098

characteristic: organism

text: ATCC 29098

text: Generic sample from Desulfovibrio piger ATCC 29098


text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Desulfovibrio piger DSM 749

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft54.8x;523

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Desulfovibrio piger ATCC 29098

text: Desulfovibrio piger ATCC 29098

text: Reference Genome

text: not determined

characteristic: sop

text: ATCC 29098, DSM 749

text: Homo sapiens

characteristic: specific host

text: ATCC 29098

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Desulfovibrio piger ATCC 29098


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Dialister invisus str. DSM 15470

characteristic: description

text: Level 3: Improved-High-Quality Draft38.3x;2

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: Teeth

text: oral

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Dialister invisus DSM 15470

text: Dialister invisus DSM 15470

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: DSM 15470

text: Homo sapiens

text: DSM 15470

text: MIGS Cultured Bacterial/Archaeal sample from Dialister invisus DSM 15470

characteristic: title


text: live

text: Generic

text: Edwardsiella tarda strain ATCC 23685

text: Edwardsiella tarda ATCC 23685

characteristic: organism

text: ATCC 23685

text: Generic sample from Edwardsiella tarda ATCC 23685


text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Eikenella corrodens strain ATCC 23834

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft36.1x;65

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Eikenella corrodens ATCC 23834

text: Eikenella corrodens ATCC 23834

text: Reference Genome

text: not determined

characteristic: sop

text: ATCC 23834, BCRC 14415, CCUG 2138, DSM 8340

text: Homo sapiens

characteristic: specific host

text: ATCC 23834

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Eikenella corrodens ATCC 23834


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Eubacterium saphenum strain ATCC 49989

characteristic: description

text: Level 3: Improved-High-Quality Draft61.6x;5

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: Periodontal

text: oral

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Eubacterium saphenum ATCC 49989

text: Eubacterium saphenum ATCC 49989

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: ATCC 49989

text: Homo sapiens

text: ATCC 49989

text: MIGS Cultured Bacterial/Archaeal sample from Eubacterium saphenum ATCC 49989

characteristic: title


text: live

text: Generic

text: Enterobacter cancerogenus strain ATCC 35316

text: Enterobacter cancerogenus ATCC 35316

characteristic: organism

text: ATCC 35316

text: Generic sample from Enterobacter cancerogenus ATCC 35316


text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Eubacterium biforme strain DSM 3989

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft31.7x;161

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Holdemanella biformis DSM 3989

text: Eubacterium biforme DSM 3989

text: Reference Genome

text: not determined

characteristic: sop

text: DSM 3989, ATCC 27806

text: Homo sapiens

characteristic: specific host

text: DSM 3989

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Eubacterium biforme DSM 3989


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Eubacterium hallii ATCC 27751

characteristic: description

text: Anaerobutyricum hallii DSM 3353

text: DSM 3353

text: Generic sample from Eubacterium hallii DSM 3353

characteristic: title


text: Washington University, Genome Sequencing Center

text: live

text: MIGS.ba

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Fusobacterium periodonticum strain ATCC 33693

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft28.3x;143

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: oral

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Fusobacterium periodonticum ATCC 33693

characteristic: organism

text: Fusobacterium periodonticum ATCC 33693

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: ATCC 33693

text: Homo sapiens

text: ATCC 33693

text: MIGS Cultured Bacterial/Archaeal sample from Fusobacterium periodonticum ATCC 33693


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Gemella haemolysans strain ATCC 10379

characteristic: description

text: Gemella haemolysans ATCC 10379

text: ATCC 10379

characteristic: strain

text: Generic sample from Gemella haemolysans ATCC 10379


text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Holdemania filiformis strain DSM 12042

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft18.2x;289

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Holdemania filiformis DSM 12042

text: Holdemania filiformis VPI J1-31B-1, DSM 12042

text: Reference Genome

text: not determined

characteristic: sop

text: DSM 12042, ATCC 51649

text: Homo sapiens

characteristic: specific host

text: DSM 12042

text: MIGS Cultured Bacterial/Archaeal sample from Holdemania filiformis DSM 12042

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Jonquetella anthropi strain E3_33 E1

characteristic: description

text: Level 3: Improved-High-Quality Draft42.4x;45

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: oral

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Jonquetella anthropi E3_33 E1

characteristic: organism

text: Jonquetella anthropi E3_33 E1

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

text: BEI HM-17

text: Homo sapiens

text: E3_33 E1

text: MIGS Cultured Bacterial/Archaeal sample from Jonquetella anthropi E3_33 E1


text: live

text: MIGS.ba

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Kingella oralis strain ATCC 51147

characteristic: estimated size

characteristic: feature

text: Level 3: Improved-High-Quality Draft30x;12

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: Periodontal

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Kingella oralis ATCC 51147

text: Kingella oralis UB-38, ATCC 51147

text: Reference Genome

text: not determined

characteristic: sop

text: ATCC 51147, CCUG 30450

text: Homo sapiens

characteristic: specific host

text: ATCC 51147

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Kingella oralis ATCC 51147


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Leptotrichia hofstadii strain F0254

characteristic: description

text: Level 3: Improved-High-Quality Draft25.1x;67

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: oral

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Leptotrichia hofstadii F0254

characteristic: organism

text: Leptotrichia hofstadii F0254

characteristic: project name

text: Reference Genome

text: not determined

text: BEI HM-9

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Leptotrichia hofstadii F0254

characteristic: title


text: live

text: MIGS.ba

text: Newbler v. 2.0.00.20

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Methanobrevibacter smithii F1

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft49x;24

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: Intestinal tract

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Methanobrevibacter smithii DSM 2374

text: Methanobrevibacter smithii DSM 2375

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: DSM 2375

text: Homo sapiens

characteristic: specific host

text: DSM 2374

text: MIGS Cultured Bacterial/Archaeal sample from Methanobrevibacter smithii DSM 2374