text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mouse monoclonal IgG, raised against a synthetic peptide corresponding to a.a. 900-909 of BCLAF1 of human origin. Antibody Target: BCLAF1

characteristic: antibody antibodydescription

text: This gene encodes a transcriptional repressor that interacts with several members of the BCL2 family of proteins. Overexpression of this protein induces apoptosis, which can be suppressed by co-expression of BCL2 proteins (RefSeq).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_K562_BCLAF1_(SC-101388)_PCR1x

characteristic: title


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal. Antibody Target: YY1

tag: attribute

text: Rabbit polyclonal

text: YIN YANG 1 transcription factor belongs to the GLI-Kruppel class of zinc finger proteins.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: Coriell

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

characteristic: cell description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_GM12892_YY1_v041610.1

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal. Antibody Target: RAD21

characteristic: antibody antibodydescription

text: Rabbit polyclonal

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: ATCC

text: hepatocellular carcinoma

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_HepG2_Rad21_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Bcl-3(C-14) is an affinity purified rabbit polyclonal antibody raised against a peptide mapping at the C-terminus of Bcl-3 of human origin. Recommended for detection of Bcl-3 of m, r and h origin by WB, IP, IF and ELISA.

text: This gene is a proto-oncogene candidate. It is identified by its translocation into the immunoglobulin alpha-locus in some cases of B-cell leukemia. The protein encoded by this gene contains seven ankyrin repeats, which are most closely related to those found in I kappa B proteins. This protein functions as a transcriptional co-activator that activates through its association with NF-kappa B homodimers. The expression of this gene can be induced by NF-kappa B, which forms a part of the autoregulatory loop that controls the nuclear residence of p50 NF-kappa B. (Provided by RefSeq).

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

characteristic: controlid

text: ChipSeq

text: ChIP-Seq

characteristic: datatype description

text: HudsonAlpha

characteristic: lab

text: Myers - Hudson Alpha Institute for Biotechnology

characteristic: lab description

characteristic: labexpid

text: Homo sapiens

text: 1-cycle of PCR (Myers)

text: tier 1

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit affinity purified polyclonal antibody. Epitope is the C-terminus of human estrogen receptor alpha (ESR1). Recommended for detection of estrogen receptor of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: ESR1

characteristic: antibody antibodydescription

text: This gene encodes an estrogen receptor, a ligand-activated transcription factor composed of several domains important for hormone binding, DNA binding, and activation of transcription. The protein localizes to the nucleus where it may form a homodimer or a heterodimer with estrogen receptor 2. Estrogen and its receptors are essential for sexual development and reproductive function, but also play a role in other tissues such as bone. Estrogen receptors are also involved in pathological processes including breast cancer, endometrial cancer, and osteoporosis. Alternative splicing results in several transcript variants, which differ in their 5-prime UTRs and use different promoters. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: epithelial cell line derived from a mammary ductal carcinoma.

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: HudsonAlpha_ChipSeq_T-47D_ERalpha_a_DMSO_0.02pct_v041610.2

characteristic: treatment

text: 1 h with 0.02% DMSO (Myers)

characteristic: treatment description

text: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: SRF

characteristic: antibody

text: Rabbit polyclonal

text: Rabbit polyclonal. Antibody Target: SRF

text: Serum response transcription factor

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: tier 1

text: MACS

characteristic: softwareversion

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RevXlinkChromatin

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: endoderm

characteristic: cell lineage

text: M

characteristic: cell sex

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

text: tier 1

text: HudsonAlpha_ChipSeq_HepG2_RevXlinkChromatin_PCR1x


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit Polyclonal. Antibody Target: P300

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_T-47D_p300_DMSO_0.02pct_v041610.2

characteristic: treatment

text: 1 h with 0.02% DMSO (Myers)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Max

characteristic: antibody

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: F

characteristic: cell sex

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: tier 1

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: GABP

text: Mouse monoclonal, GABPa(G-1), IgG1

characteristic: antibody antibodydescription

text: Mouse monoclonal, GABPa(G-1), IgG1. Antibody Target: GABP

text: The transcription factor GA-binding protein (GABP) is composed of two subunits, alpha and beta. Alpha binds to a specific DNA sequence.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: F

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: tier 1


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody

text: Rabbit polyclonal, Sin3A (k-20). Antibody Target: SIN3AK20

text: Rabbit polyclonal, Sin3A (k-20).

text: Co-repressor interacting with HDAC1, N-coR, SMRT, and MeCP2

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_K562_Sin3Ak-20_v041610.1

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

text: ATCC

text: neuroblastoma cell line, treatment: differentiated with retinoic acid. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

characteristic: cell description

text: neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: tier 1

text: HudsonAlpha_ChipSeq_SK-N-SH_RA_RevXlinkChromatin_v041610.2

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit polyclonal, USF-1 (C-20). Antibody Target: USF1

characteristic: antibody antibodydescription

text: The ubiquitously expressed cellular upstream stimulatory factor (USF) consists of USF-1 and USF-2 polypeptides which independently exhibit site-specific DNA binding and are members of the c-Myc-related family of regulatory factors containing helix-loop-helix domains. USF also contains a leucine repeat that is required for efficient DNA binding. USF was originally identified as an up- stream stimulatory factor that binds the core sequence CACGTG in the adeno- virus late promoter. These findings, together with the demonstration of coop- erative interaction between USF and the initiator-binding protein, TFII-I, raises the possibility of a more general involvement of USF in transcriptional regula- tion. While expression of both USF-1 and USF-2 species is ubiquitous, different ratios of USF homo- and heterodimers are found in different cell types.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labversion

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RevXlinkChromatin

characteristic: antibody

text: ATCC

text: neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: F

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

text: 2-cycles of PCR (Myers)

text: tier 1

text: SK-N-SH

text: HudsonAlpha_ChipSeq_SK-N-SH_RevXlinkChromatin_PCR2x

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: JunD

text: rabbit polyclonal IgG. Antibody Target: JunD

characteristic: antibody antibodydescription

text: rabbit polyclonal IgG

text: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Homo sapiens

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_H1-hESC_JunD_v041610.2


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_HepG2_Sin3Ak-20_PCR1x

characteristic: title

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit Polyclonal IgG. Antibody Target: PU1

characteristic: antibody antibodydescription

text: PU.1 (H-135)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit Polyclonal IgG. Antibody Target: PBX3

text: Pbx 3 (D-17)

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

characteristic: cell description

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

text: MACS

characteristic: softwareversion


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

text: ectoderm

characteristic: cell lineage

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Oct-2(C-20) is an affinity purified rabbit polyclonal antibody raised against a peptide mapping at the C-terminus of Oct-2 of human origin. Recommended for detection of Oct-2 of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: POU2F2

text: Transcription factor that specifically binds to the octamer motif (5'-ATTTGCAT-3'). Regulates transcription in a number of tissues in addition to activating immunoglobulin gene expression. Modulates transcription transactivation by NR3C1, AR and PGR. Isoform 5 activates the U2 small nuclear RNA (snRNA) promoter.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

characteristic: biomaterial provider

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_GM12878_POU2F2_PCR1x

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody antibodydescription

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1

text: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: tier 1

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_GM12891_YY1_(SC-281)_v041610.1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA Polymerase II

text: Covance

text: ATCC

characteristic: biomaterial provider

text: epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes

characteristic: cell description

text: endoderm

characteristic: cell lineage

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

text: tier 1

characteristic: replicate description

text: MACS

text: HudsonAlpha_ChipSeq_ECC-1_Pol2_DMSO_0.02pct_v041610.2

characteristic: title

characteristic: treatment

text: 1 h with 0.02% DMSO (Myers)

text: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Mouse monoclonal (p250). Antibody Target: TAF1

characteristic: antibody antibodydescription

text: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

text: tier 1

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal. Raised against recombinant B-ATF of human origin. Recommended for detection of B-ATF of m, r and h origin by WB, IP and ELISA. Antibody Target: BATF

text: The protein encoded by this gene is a nuclear basic leucine zipper protein that belongs to the AP-1/ATF superfamily of transcription factors. The leucine zipper of this protein mediates dimerization with members of the Jun family of proteins. This protein is thought to be a negative regulator of AP-1/ATF transcriptional events.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: one 15-cycle round of PCR (Myers)

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rabbit affinity purified polyclonal antibody. Epitope is the C-terminus of human estrogen receptor alpha (ESR1). Recommended for detection of estrogen receptor of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: ESR1

characteristic: antibody antibodydescription

text: This gene encodes an estrogen receptor, a ligand-activated transcription factor composed of several domains important for hormone binding, DNA binding, and activation of transcription. The protein localizes to the nucleus where it may form a homodimer or a heterodimer with estrogen receptor 2. Estrogen and its receptors are essential for sexual development and reproductive function, but also play a role in other tissues such as bone. Estrogen receptors are also involved in pathological processes including breast cancer, endometrial cancer, and osteoporosis. Alternative splicing results in several transcript variants, which differ in their 5-prime UTRs and use different promoters. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: ATCC

text: epithelial cell line derived from a mammary ductal carcinoma.

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_T-47D_ERalpha_a_Estradiol_10nM_v041610.2

characteristic: title

characteristic: treatment

text: 1 h with 10 nM Estradiol (Myers)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Mouse monoclonal IgG.

text: Mouse monoclonal IgG. Antibody Target: GATA2

text: This gene encodes a member of the GATA family of zinc-finger transcription factors that are named for the consensus nucleotide sequence they bind in the promoter regions of target genes. The encoded program plays an essential role in regulation transcription of genes involved in the development and proliferation of hematopoietic and endocrine cell lineages (RefSeq).

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_K562_GATA2_(SC-267)_PCR1x

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes

characteristic: cell description

text: endoderm

characteristic: cell lineage

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: protocol

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_ECC-1_ERalpha_a_Genistein_100nM_v041610.2

text: 1 h with 100 nM Genistein (Myers)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit Polyclonal

text: Rabbit Polyclonal. Antibody Target: P300

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Santa Cruz Biotechnology

text: WiCell Research Institute

characteristic: biomaterial provider

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_H1-hESC_p300_v041610.2

characteristic: title


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rhinovirus B

characteristic: organism

characteristic: strain

text: Rhinovirus p1210_sR2128_2009


CS-FINOLA-DNA

characteristic: External Id

text: University of Toronto

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Plant

text: Finola

characteristic: cultivar

text: Genomic DNA was purified from nuclei isolated from young leaves. Briefly, leaves were frozen in liquid nitrogen, extracted with homogenization buffer (10 mM Tris pH 9.5, 80 mM KCl, 10 mM EDTA, 1 mM spermidine, 1 mM spermine, 0.15% β-mercaptoethanol and 0.5% Triton X-100) with gentle stirring and the extract filtered through cheesecloth and Miracloth. The nuclei and cell debris were pelleted by centrifugation and resuspended in wash buffer (as above with 0.5% (v/v) Triton X-100 and 0.15% β-mercaptoethanol) using a paintbrush. After low-speed centrifugation to remove cell debris, the nuclei were recovered by centrifugation. The nuclei were resuspended in wash buffer and centrifuged three times to remove other organelles. Genomic DNA was isolated from purified nuclei by treatment with proteinase K, extraction with phenol-chloroform and precipitation with isopropanol. The precipitated DNA was spooled using a glass hook, washed with 70% ethanol and treated with RNase. The DNA was extracted with phenol-chloroform, precipitated with sodium acetate/ethanol, spooled with a glass hook, washed with 70% ethanol and air dried. The purified DNA was dissolved in TE buffer.

characteristic: description

text: Cannabis sativa

text: young leaf

characteristic: tissue

text: Cannabis sativa 'Finola' genomic DNA


text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Francisella tularensis

characteristic: sample name

text: Generic sample from Francisella tularensis


text: LCBS-MIIB, NIAMS, NIH

text: live

text: Generic

text: in vitro repolarized T helper1 cells

characteristic: cell type

characteristic: chip antibody

text: Millipore

characteristic: chip antibody manufacturer

text: Mus musculus

text: FACS sorted naive CD4+T cells cultured in vitro for 2 rounds of polarization under Th1 conditions

characteristic: passages

text: primary CD4+ T cells from spleen and lymph nodes

text: WT TCR transgenic OT-II


text: LCBS-MIIB, NIAMS, NIH

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: in vitro repolarized T helper2 cells

text: Millipore

text: Mus musculus

text: FACS sorted naive CD4+T cells cultured in vitro for 2 rounds of polarization under Th2 conditions

text: WT TCR transgenic OT-II

characteristic: title


characteristic: External Id

text: LCBS-MIIB, NIAMS, NIH

text: live

text: Generic

characteristic: NCBI submission model

text: in vitro repolarized T helper17 cells

text: Millipore

text: Mus musculus

characteristic: organism

text: FACS sorted naive CD4+T cells cultured in vitro for 2 rounds of polarization under Th17 conditions

text: WT TCR transgenic OT-II

characteristic: strain


text: LCBS-MIIB, NIAMS, NIH

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: in vitro repolarized T follicular helper-like cells

text: Millipore

text: Mus musculus

text: FACS sorted naive CD4+T cells cultured in vitro for 2 rounds of polarization under Tfh-like conditions

text: WT TCR transgenic OT-II

text: Tfh like-H3K4me3


text: LCBS-MIIB, NIAMS, NIH

text: live

text: Generic

characteristic: NCBI submission package

text: Millipore

text: Mus musculus

text: WT TCR transgenic OT-II

text: Tfh like-H3K27me3


text: LCBS-MIIB, NIAMS, NIH

text: live

text: Generic

characteristic: SRA accession

text: CXCR5+PD1+ sorted in vitro repolarized T follicular helper-like cells

text: Millipore

text: Mus musculus

text: WT TCR transgenic OT-II

text: Sorted Tfh like-H3K4me3


text: LCBS-MIIB, NIAMS, NIH

text: live

text: Generic

text: Millipore

text: Mus musculus

text: WT TCR transgenic OT-II

text: Sorted Tfh like-H3K27me3


text: LCBS-MIIB, NIAMS, NIH

text: live

text: Generic

text: ex vivo sorted T follicular helper cells

text: Millipore

text: Mus musculus

text: FACS sorted Tfh cells after immunization with SRBCs on day 6

text: Tfh ex vivo-H3K4me3


text: LCBS-MIIB, NIAMS, NIH

text: live

text: Generic

text: Millipore

text: Mus musculus

text: Tfh ex vivo-H3K27me3


text: Genome Technology Core, Whitehead Institute

text: live

text: Generic

text: 6-8 weeks

characteristic: age

text: male

characteristic: gender

text: Mus musculus

text: Mouse Heart

text: heart

characteristic: tissue


text: live

text: Generic

text: 6-8 weeks

text: female

text: Mus musculus

text: Mouse Heart

text: heart


CS-FINOLA-RNA-MFLW

text: University of Toronto

text: live

text: Plant

text: Finola

characteristic: cultivar

text: Finola total RNA was isolated from mid-stage flowers (flowers with visible, non-withered stigmas and conspicuous trichomes), using CTAB-based method followed by clean-up with an RNeasy Plant Mini Kit (Qiagen). Genomic DNA was removed by on-column digest with DNase I (Qiagen).

characteristic: description

text: Cannabis

text: mid-stage flowers

text: Cannabis sativa 'Finola' Mid-Flower polyA RNA-Seq library FN-MFLW


characteristic: INSDC last update

text: live

text: Generic

text: Rhinovirus B

text: Rhinovirus p1198_sR1308_2009


text: M.S. Swaminathan Research Foundation

text: live

text: Generic

text: Different developmental stages of Jatropha curcas fruits were collected from Kudankulam. Two micrograms of mRNA was purified from total RNA extracted from late (tester) and early (driver) maturation seed stages and used for constructing SSH (Supression Subtraction Hybridisation) library using Clontech's PCR Select cDNA Subtraction Kit (Cat: No:637401) following the manufacturer's protocol. Subtracted clones were ligated into T Vector from fermentas (Cat No: K1214) following the manufacturer's protocol.

text: Immature seed stages

characteristic: dev-stage

text: Jatropha curcas

text: Jatropha curcas, immature Seed cDNA subtraction library

text: T Vector

text: pTZ57R/T from fermantas

characteristic: vector


text: CENA-USP

text: live

characteristic: INSDC status

text: Generic

text: BAT 477

text: Plants from both Phaseolus vulgaris L. cultivars: BAT (tolerant) and Carioca 80SH (succeptible), were harvested after 120 hrs. of imposing drought stress. It was conducted total RNA extraction from roots of both samples and two cDNA libraries were constructed using PCR cDNA Synthesis Kit SMARTerTM kit and Advantage 2 PCR Kit. A suppressive subtractive library was done taking as tester BAT477 cDNA and as driver Carioca 80SH cDNA using the PCR-SelectTM cDNA Subtraction Kit. Inserts subtracted from the tolerant cDNA library were bonded to the vector pGEM - T Easy Vector from Promega and cloned in E. coli (DH5alpha) for sequencing.

text: Escherichia coli (DH5alpha)

characteristic: lab-host

text: Root

characteristic: organ

text: Phaseolus vulgaris

text: RsaI

text: RsaI

text: ESTs from a SSH Library for drought stress tolerance in Phaseolus vulgaris L. roots cv. BAT 477

characteristic: title

text: Plasmid

text: P-GEM T-Easy Vector


characteristic: External Id

text: Washington University, Genome Sequencing Center

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: Dictyocaulus viviparus

characteristic: organism

characteristic: sample id

characteristic: sample name

text: cdna

characteristic: sample type

text: Generic sample from Dictyocaulus viviparus


name: Caenorhabditis elegans N2 larval L4 control for Haptocillium sphaerosporum non-infected

text: University of Washington Genome Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: C. elegans N2 larval L4 control for Haptocillium sphaerosporum (http://wiki.modencode.org/project/index.php/DevStageWorm:Hsph:RW:1), non-infected 6 hours, 25 degrees C, polyA+ RNAseq random fragment. Kindly contributed by Jonathan Ewbank. This sample is available through the modENCODE DCC (www.modencode.org) as: L4_Haptocillium_control_EcoliOP50_exposed_6hrs Local library name: HsphEcoliCntl Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC last update

text: live

text: Generic

text: Rhinovirus C

characteristic: strain

text: Rhinovirus p1281_s6410_1999


name: Caenorhabditis elegans N2 larval L4 exposed to Haptocillium sphaerosporum

text: live

characteristic: INSDC status

text: Generic

text: C. elegans N2 larval L4 exposed to fungus Haptocillium sphaerosporum, 6 hours, 25 degrees C, polyA+ RNAseq random fragment. Sample received from the CBS (database http://www.mycobank.org/), sample CBS 889.85 Kindly contributed by Jonathan Ewbank. This sample is available through the modENCODE DCC (www.modencode.org) as: L4_Haptocillium_exposed_6hrs Local library name: Hsph Quality values are ASCII encoded Phred + 33.

characteristic: description

text: Caenorhabditis elegans


text: live

text: Generic

text: Rhinovirus C

text: Rhinovirus p1264_s3778_1999


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1201_sR3025_2009


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1162_sR1549_2009


text: live

text: Generic

text: Rhinovirus C

text: Rhinovirus p1210_sR2132_2009


text: live

text: Generic

text: Rhinovirus C

text: Rhinovirus p1196_sR3009_2008


text: Spira/Lenburg Lab, Computational Biomedicine, Boston University

text: live

text: Generic

characteristic: average age

text: 3 No

characteristic: lung cancer

text: Homo sapiens

text: 3 Female

characteristic: sex

text: 3 Never

characteristic: smoking status

text: Large airway epithelial cells

text: Healthy non-smoker


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: 3 No

text: Homo sapiens

characteristic: packyears

text: 1 Male, 2 Female

text: 3 Current

text: Large airway epithelial cells

text: Healthy smoker

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: 3 No

text: Homo sapiens

characteristic: organism

text: 1 Male, 2 Female

text: 2 Former, 1 Current

text: Large airway epithelial cells

text: Smoker without Lung Cancer


characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: 3 Yes

text: Homo sapiens

text: 2 Male, 1 Female

text: 2 Former, 1 Current

text: Large airway epithelial cells

text: Smoker with Lung Cancer


text: 2125 K, Cancer Center, Georgia Health Sciences University

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: CD19+ B-cells

characteristic: cell type

text: Homo sapiens

text: CLL primary B-cells

text: Blood

characteristic: tissue

text: Tumor

characteristic: tumorgenecity


text: live

characteristic: INSDC status

text: Generic

text: CD19+ B-cells

text: Homo sapiens

text: Normal CD19+ B-cells

text: Blood

text: Normal


text: live

text: Generic

text: CD19+ B-cells

text: Homo sapiens

text: Normal Naïve B-cells

text: Blood

text: Normal


text: live

text: Generic

text: CD19+ B-cells

text: Homo sapiens

text: Normal Memory B-cells

text: Blood

text: Normal


text: live

text: Generic

text: CD19+ B-cells

text: Homo sapiens

text: Mec-1 CLL cell lines

text: Blood

text: Tumor


text: live

text: Generic

text: CD19+ B-cells

text: Homo sapiens

text: Mec-2 CLL cell line

text: Blood

text: Tumor


text: live

text: Generic

text: CD19+ B-cells

text: Homo sapiens

text: WacCD5 CLL cell lines

text: Blood

text: Tumor


text: live

text: Generic

text: Rhinovirus C

characteristic: strain

text: Rhinovirus p1262_s3454_2000


text: Epigenetics, Medical & Molecular Genetics, King's College London

text: live

text: Generic

characteristic: age

text: wild type

characteristic: genotype

characteristic: mean insert/fragment size

text: Mus musculus

text: genomic DNA after MeDIP

characteristic: sample type

text: mixed

characteristic: sex

text: whole embryo

characteristic: stddev insert/fragment size

text: embryo

text: embryo wt rep1


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: wild type

text: Mus musculus

text: genomic DNA after MeDIP

text: mixed

text: whole embryo

text: embryo

text: embryo wt rep2

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Mus musculus

characteristic: organism

text: genomic DNA after MeDIP

text: mixed

text: whole embryo

text: embryo

text: embryo dnmt3l- rep1


text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: genomic DNA after MeDIP

text: mixed

text: whole embryo

characteristic: strain

text: embryo

characteristic: tissue

text: embryo dnmt3l- rep2


text: live

text: Generic

text: 3 months

characteristic: age

text: sperm

characteristic: cell type

text: wild type

characteristic: genotype

characteristic: mean insert/fragment size

text: Mus musculus

text: genomic DNA after MeDIP

text: male

text: sperm

text: sperm rep1


characteristic: External Id

text: live

text: Generic

text: 3 months

text: sperm

text: wild type

text: Mus musculus

text: genomic DNA after MeDIP

characteristic: sample type

text: male

characteristic: sex

text: sperm

characteristic: stddev insert/fragment size

text: sperm rep2


characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: 3 months

text: sperm

text: wild type

text: Mus musculus

text: genomic DNA after MeDIP

text: male

text: sperm

text: sperm rep3

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: 3 months

text: wild type

text: Mus musculus

text: genomic DNA after MeDIP

text: mixed

text: liver

text: liver

text: liver rep1


text: live

characteristic: INSDC status

text: Generic

text: wild type

text: Mus musculus

characteristic: organism

text: genomic DNA after MeDIP

text: mixed

text: liver

characteristic: strain

text: liver

characteristic: tissue

text: liver rep2


text: live

text: Generic

characteristic: age

text: wild type

characteristic: genotype

characteristic: mean insert/fragment size

text: Mus musculus

text: genomic DNA after MeDIP

text: mixed

text: liver

text: liver

text: liver rep3


characteristic: External Id

text: live

text: Generic

text: wild type

text: Mus musculus

text: genomic DNA after MeDIP

characteristic: sample type

text: mixed

characteristic: sex

text: liver

text: liver

text: liver rep4


characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: wild type

text: Mus musculus

text: genomic DNA after MeDIP

text: mixed

text: liver

characteristic: stddev insert/fragment size

text: liver

text: liver rep5


characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: wild type

text: Mus musculus

text: genomic DNA after MeDIP

text: mixed

text: liver

text: liver

text: liver rep6

characteristic: title


characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: wild type

text: Mus musculus

text: genomic DNA after MeDIP

text: mixed

text: liver

text: liver

text: liver rep7


text: live

characteristic: INSDC status

text: Generic

text: wild type

text: Mus musculus

characteristic: organism

text: genomic DNA after MeDIP

text: mixed

text: liver

characteristic: strain

text: liver

text: liver rep8


text: live

text: Generic

characteristic: age

text: wild type

characteristic: genotype

text: Mus musculus

text: genomic DNA after MeDIP

text: mixed

text: liver

text: liver

characteristic: tissue

text: liver rep9


characteristic: External Id

text: live

text: Generic

text: wild type

characteristic: mean insert/fragment size

text: Mus musculus

text: genomic DNA after MeDIP

characteristic: sample type

text: mixed

text: liver

text: liver

text: liver rep10


characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: wild type

text: Mus musculus

text: genomic DNA after MeDIP

text: mixed

characteristic: sex

text: liver

text: liver

text: liver rep11


characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: wild type

text: Mus musculus

text: genomic DNA after MeDIP

text: mixed

text: liver

characteristic: stddev insert/fragment size

text: liver

text: liver rep12


text: Laboratory of Epigenome Biology, Systems Biology Center, NHLBI/NIH

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: antibody

text: CD4+ T cells

characteristic: cell type

text: Homo sapiens

text: CD4+ T cells

characteristic: title

text: Millipore, 07-030

characteristic: vendor


Ler sequencing 2nd sample

text: Penn State University - Ma Lab

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: genomic sequence of Landsberg erecta (Ler) ecotype

characteristic: description

text: Arabidopsis thaliana

characteristic: organism

text: Ler genome resequencing 2nd sample


1st meiosis sample (1st tetrad)

characteristic: External Id

text: Penn State University - Ma Lab

text: live

text: Generic

text: sequencing a tetrad from Col/Ler hybrid

text: Arabidopsis thaliana

text: 1st tetrad


10dpp ox

text: Umass Medical School

characteristic: INSDC center name

text: live

text: Generic

text: West Nile virus

text: Small RNA


text: Buell Lab, Dept. of Plant Biology, Michigan State University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa, Nipponbare 20 Day Leaves


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa, Nipponbare Emerging Inflorescence


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa, Nipponbare Early Inflorescence


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa, Nipponbare Anther


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa, Nipponbare Pistil


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa, Nipponbare Seed 5 Days After Pollination


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa, Nipponbare Embryo 25 Days After Pollination


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa, Nipponbare Endosperm 25 Days After Pollination


text: live

text: Generic

text: Oryza sativa Japonica Group

text: Oryza sativa, Nipponbare Seed 10 Days After Pollination


PK-MFLW

text: University of Toronto

text: live

text: Plant

text: Purple Kush

characteristic: cultivar

text: Cannabis sativa Purple Kush polyA RNA isolated from Mid-stage flowers (flowers with visible, non-withered stigmas and conspicuous trichomes).

text: Cannabis sativa

text: mid-stage flowers

characteristic: tissue

text: Cannabis sativa Purple Kush Mid-stage flower polyA RNA


PK-EFLW

text: University of Toronto

characteristic: INSDC first public

text: live

text: Plant

characteristic: NCBI submission model

text: Purple Kush

text: Cannabis sativa Purple Kush polyA RNA isolated from Early-stage flowers (flowers with visible stigmas).

text: Cannabis sativa

text: ealry-stage flowers

text: Cannabis sativa Purple Kush Early-stage flower polyA RNA


PK-PFLW

text: University of Toronto

characteristic: INSDC last update

text: live

text: Plant

text: Purple Kush

text: Cannabis sativa Purple Kush polyA RNA isolated from Pre-flowers (shoot tips with flower primordia but no visible stigmas).

text: Cannabis sativa

text: pre-flowers

text: Cannabis sativa Purple Kush Pre-flower polyA RNA


PK-SHT

text: University of Toronto

text: live

text: Plant

characteristic: NCBI submission package

text: Purple Kush

text: Cannabis sativa Purple Kush polyA RNA isolated from shoots (shoot tips with young leaves and apical meristems).

text: Cannabis sativa

text: shoots

text: Cannabis sativa Purple Kush Shoot polyA RNA


PK-STM

text: University of Toronto

text: live

text: Plant

text: Purple Kush

text: Cannabis sativa Purple Kush polyA RNA isolated from Stems.

text: Cannabis sativa

text: stems

text: Cannabis sativa Purple Kush Stem polyA RNA


text: The Salk Institute - Ecker Laboratory

text: live

text: Generic

text: Arabidopsis thaliana

text: Col-0 replicate 1


text: The Salk Institute - Ecker Laboratory

text: live

text: Generic

text: Arabidopsis thaliana


PK-RT

text: University of Toronto

text: live

text: Plant

text: Purple Kush

text: Cannabis sativa Purple Kush polyA RNA isolated from roots.

text: Cannabis sativa

text: roots

text: Cannabis sativa Purple Kush Root polyA RNA


PK-Normalized

text: University of Toronto

text: live

text: Plant

text: Purple Kush

text: Normalized Cannabis sativa Purple Kush polyA RNA sample that was derived from a pool of RNA isolated from roots, shoots, stems, pre-flowers, early-stage flowers and mid-stage flowers.

text: Cannabis sativa

text: Cannabis sativa Purple Kush Normalized polyA RNA


2nd meiosis sample (2nd tetrad)

text: Penn State University - Ma Lab

text: live

text: Generic

text: sequencing a tetrad from Col/Ler hybrid

text: Arabidopsis thaliana

text: 2nd tetrad


name: Run 2/Sample 2 for squirrel transcriptome

text: University of Minnesota Duluth

text: live

text: Generic

text: These reads include skeletal muscle, white adipose tissue, and heart samples from April Active, and heart samples from October active, January torpid, and January active (interbout arousal) animals. Each timepoint is from 6 pooled individual RNA - 3 males and 3 females.

text: Ictidomys tridecemlineatus

text: 454 Transcriptome for Ictidomys tridecemlineatus, six timepoints from two tissues


name: Run 3/Sample 3 for squirrel transcriptome

text: University of Minnesota Duluth

text: live

text: Generic

text: These reads include skeletal muscle, white adipose tissue, and heart samples from August active and March active (interbout arousal) animals. Each timepoint is from 6 pooled individual RNA - 3 males and 3 females.

text: Ictidomys tridecemlineatus


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Hoatzin crop Protozoan 21

text: metagenome

characteristic: sample number

text: Generic sample from metagenome


text: KORDI

text: live

text: Generic

text: September, 2006

characteristic: Sampling date

text: 135.00E 14.00N

characteristic: location Stn 14

text: 135.00E 15.00N

characteristic: location Stn 16

text: 135.00E 16.00N

characteristic: location Stn 18

text: 135.00E 17.00N

characteristic: location Stn 20

text: 133.33E 15.00N

characteristic: location Stn 22

text: 131.67E 13.00N

characteristic: location Stn 24

text: 130.00E 12.00N

characteristic: location Stn 27

text: 130.00E 16.00N

characteristic: location Stn 31

text: 130.00E 19.00N

characteristic: location Stn 34

text: 126.00E 30.46N

characteristic: location Stn 36

text: 125.25E 32.08N

characteristic: location Stn 38

text: 127.20E 32.25N

characteristic: location Stn 39

text: 152.10E 6.90N

characteristic: location Stn 4

text: 127.67E 33.25N

characteristic: location Stn 40

text: 128.45E 34.17N

characteristic: location Stn 41

text: 151.43E 7.58N

characteristic: location Stn 8

text: 135.00E 11.50N

characteristic: location Stn 9

text: 150.52E 8.79N

characteristic: location Stn A1

text: 147.69E 9.53N

characteristic: location Stn A2

text: 145.60E 9.86N

characteristic: location Stn A3

text: 142.05E 10.39N

characteristic: location Stn A4

text: 140.05E 10.70N

characteristic: location Stn A5

text: 136.66E 11.23N

characteristic: location Stn A6

text: 128.83E 22.17N

characteristic: location Stn B1

text: 126.46E 26.73N

characteristic: location Stn B2

text: 126.20E 28.73N

characteristic: location Stn B3

text: environmental samples

text: picocyanobacteria at surface water of the Northwestern Pacific Ocean (LDP-POS0609)


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Methanoplanus limicola DSM 2279

characteristic: description

text: Methanoplanus limicola DSM 2279

characteristic: organism

characteristic: sample number

text: DSM 2279

characteristic: strain

text: Generic sample from Methanoplanus limicola DSM 2279

characteristic: title


name: Caenorhabditis brenneri PB2801 early embryo RNA library EE-1

text: University of Washington Genome Sciences

text: live

text: Generic

text: Illumina sequences of C. brenneri PB2801 early embryo library EE-1 polyA+ RNAseq random fragment library. C. brenneri strain PB2801 early embryos. Bleached from synchronized adult stage animals, grew at 20 degrees on enriched OP50 plates. This sample is available through the modENCODE DCC (www.modencode.org) as: PB2801_EE-1 Local library name: PB2801_EE-1 Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

text: Caenorhabditis brenneri


name: Caenorhabditis brenneri PB2801 larval L4 RNA library L4-1

text: live

text: Generic

text: C. brenneri PB2801 larval L4 animal Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

text: Caenorhabditis brenneri


name: C. brenneri strain PB2801 Young adult female_

text: live

text: Generic

text: C. brenneri strain PB2801 Young adult female; Synchronized L1s grew at 20 degrees for about 54 hrs on enriched OP50 plates; then the females were picked from these worms. This sample is available through the modENCODE DCC (www.modencode.org) as: PB2801_YAF-1 Local library name: PB2801_YAF-1 Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

text: Caenorhabditis brenneri

text: C. brenneri strain PB2801 Young adult female; Synchronized L1s grew at 20 degree for about 54 hrs on enriched OP50 plates; then the females were picked from these worms.


name: C. brenneri strain PB2801 Young adult male_

text: live

text: Generic

text: C. brenneri strain PB2801 Young adult male; Synchronized L1s grew at 20 degrees for about 54 hrs on enriched OP50 plates; then the males were picked from these worms. This sample is available through the modENCODE DCC (www.modencode.org) as: PB2801_YAM-1 Local library name: PB2801_YAM-1 Quality values are ASCII encoded Phred + 33 through GAPipeline1.8.

text: Caenorhabditis brenneri

text: C. brenneri strain PB2801 Young adult male; Synchronized L1s grew at 20 degree for about 54 hrs on enriched OP50 plates; then the males were picked from these worms.


text: Developmental Biology, CABD

text: live

text: Generic

characteristic: antibody

characteristic: antibody batch

characteristic: antibody catalog

text: Diagenode

characteristic: antibody vendor

text: dome

characteristic: developmental stage

text: Danio rerio

text: H3K4me3_dome, danRer6

text: whole embryo

characteristic: tissue

text: H3K4me3_dome, danRer6


characteristic: External Id

text: Developmental Biology, CABD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Diagenode

text: 80% epiboly

text: Danio rerio

text: H3K4me3_80%epi, danRer6

text: whole embryo

text: H3K4me3_80%epi, danRer6


text: Developmental Biology, CABD

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Diagenode

text: Danio rerio

text: H3K4me3_24hpf, danRer6

text: whole embryo

text: H3K4me3_24hpf, danRer6


text: Developmental Biology, CABD

text: live

text: Generic

characteristic: SRA accession

text: Diagenode

text: Danio rerio

characteristic: organism

text: H3K4me3_48hpf, danRer6

text: whole embryo

text: H3K4me3_48hpf, danRer6


text: Developmental Biology, CABD

text: live

text: Generic

text: Diagenode

text: dome

text: Danio rerio

text: H3K4me1_dome, danRer6

text: whole embryo

text: H3K4me1_dome, danRer6

characteristic: title


text: Developmental Biology, CABD

text: live

text: Generic

characteristic: antibody

text: Diagenode

text: 80% epiboly

text: Danio rerio

text: H3K4me1_80%epi, danRer6

text: whole embryo

text: H3K4me1_80%epi, danRer6


text: Developmental Biology, CABD

text: live

text: Generic

characteristic: antibody batch

text: Diagenode

text: Danio rerio

text: H3K4me1_24hpf, danRer6

text: whole embryo

text: H3K4me1_24hpf, danRer6


text: Developmental Biology, CABD

text: live

text: Generic

characteristic: antibody catalog

text: Diagenode

text: Danio rerio

text: H3K4me1_48hpf, danRer6

text: whole embryo

text: H3K4me1_48hpf, danRer6


text: Developmental Biology, CABD

text: live

text: Generic

text: Abcam

text: dome

text: Danio rerio

text: H3K27ac_dome, danRer6

text: whole embryo

text: H3K27ac_dome, danRer6


text: Developmental Biology, CABD

text: live

text: Generic

text: Abcam

text: 80% epiboly

text: Danio rerio

text: H3K27ac_80%epi, danRer6

text: whole embryo

text: H3K27ac_80%epi, danRer6


text: Developmental Biology, CABD

text: live

text: Generic

text: Abcam

text: Danio rerio

text: H3K27ac_24hpf, danRer6

text: whole embryo

text: H3K27ac_24hpf, danRer6


text: Developmental Biology, CABD

text: live

text: Generic

text: Abcam

text: Danio rerio

text: H3K27ac_48hpf, danRer6

text: whole embryo

text: H3K27ac_48hpf, danRer6


text: Butler lab, School of Biomolecular and Biomedical Science, University Colege Dublin Conway Institute

text: live

text: Generic

text: BMW

characteristic: medium

text: Candida parapsilosis

characteristic: oxygen concentration

text: Total RNA from Candida parapsilosis

characteristic: strain

text: 30 degree Celsius

characteristic: temperature


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: YPD

text: Candida parapsilosis

text: Total RNA from Candida parapsilosis

text: 30 degree Celsius


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: YPD

text: Candida parapsilosis

text: Total RNA from Candida parapsilosis

text: 37 degree Celsius


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: mix of YPD and BMW medium

text: Candida parapsilosis

text: Total RNA from Candida parapsilosis

text: mix of 30 and 37 degree Celsius


name: Caenorhabditis elegans N2 early embryo EE_50-300 RNA library

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Illumina sequencing of C. elegans N2 early embryo EE_50-300 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 300 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-300 Local library name: N2_EE_50-300 Quality values are ASCII encoded Phred + 33.

characteristic: description

text: Caenorhabditis elegans


text: Cincinnati Children's Hospital Medical Center

text: live

text: Generic

characteristic: SRA accession

characteristic: cell type

text: Mus musculus

characteristic: organism

characteristic: title

text: osmolality at 300-320 mosmol/kg

characteristic: treatment

text: No.05-636, Millipore

characteristic: vendor


text: live

text: Generic

characteristic: antibody

text: Mus musculus

text: bleomycin was used at concentration of 5 µg/ml for 30 min

text: No.05-636, Millipore


text: live

text: Generic

text: Mus musculus

text: 15 J/m2 of UV light in a Stratalinker UV Crosslinker

text: No.05-636, Millipore


text: live

text: Generic

text: Mus musculus

text: osmolality at 500 mosmol/kg

text: No.05-636, Millipore


text: live

text: Generic

text: Mus musculus

text: osmolality at 500 mosmol/kg for 22 hr and then 300-320 mosmol/kg 15 min

text: No.05-636, Millipore


text: Faculty of Life Science and Technology

text: live

text: Generic

text: activated sludge bacterium GC_R2A_S_1

characteristic: strain

text: the PCR product of activated sludge


characteristic: External Id

text: Faculty of Life Science and Technology

text: live

text: Generic

text: anaerobic bacterium A104

text: the PCR product of anaerobic sludge


text: HSRC

characteristic: INSDC center name

text: live

text: Generic

text: Sesame growth and development analysis with seedling transcriptome

text: Sesamum indicum

text: Sesame growth and development trancriptome


text: Max Planck Institute for Developmental Biology

characteristic: INSDC first public

text: live

text: Generic

characteristic: ecotype

text: control

characteristic: genotype/variation

text: Arabidopsis thaliana

text: Col-0 control

text: leaves

characteristic: tissue

text: control


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: transgenic 35S::MIR164ACol-0

text: Arabidopsis thaliana

text: Col-0 35S::MIR164ACol-0

text: leaves


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: transgenic 35S::MIR164AC24

text: Arabidopsis thaliana

text: Col-0 35S::MIR164AC24

text: leaves


name: Tragopogon dubius (Sff File - FP1STUK04)

text: University of Florida

text: live

text: Generic

text: 454 Titanium Run Name: FP1STUK04.sff (1/4th plate); Tissue Type: Leaf Normalized; Library: YES; Other 454 reads for the same individual are found in SRA009218;

characteristic: description

text: Tragopogon dubius

characteristic: organism

text: Tragopogon dubius Titanium (Soltis and Soltis Collection # 2674-4)

characteristic: title


text: United States Department of Agriculture

text: live

text: Generic

text: Glycine max

text: Glycine max (Soybean) sample


text: Towson University

text: live

text: Generic

text: Vaccinium corymbosum

text: Bud 789 cdna


text: Towson University

text: live

text: Generic

text: Vaccinium corymbosum

text: Bud 1333 cdna


text: Towson University

text: live

text: Generic

text: Vaccinium corymbosum

text: Ripe cdna


text: Towson University

text: live

text: Generic

text: Vaccinium corymbosum

text: Bud 397 cdna


text: Towson University

text: live

text: Generic

text: Vaccinium corymbosum

text: Leaf cdna


text: Towson University

text: live

text: Generic

text: Vaccinium corymbosum

text: Green cdna


text: Towson University

text: live

text: Generic

text: Vaccinium corymbosum

text: White fruit cdna


text: Towson University

text: live

text: Generic

text: Vaccinium corymbosum

text: Pink fruit cdna


text: Towson University

text: live

text: Generic

text: Vaccinium corymbosum

text: Bud 0 cdna


text: Genoscope - Centre National de Sequencage

text: live

text: Generic

text: Pinot Noir, PN177

characteristic: cultivar

text: Vitis vinifera

text: flowers

characteristic: tissue-type

text: Vitis vinifera cv. Pinot Noir PN177 cDNA library


characteristic: External Id

text: University Of Aberdeen

text: live

text: Generic

text: United Kingdom: England, Dorset

characteristic: country

text: full length normalised cDNA library directionally cloned into pcDNA 3.1+

text: bryozoan stage

characteristic: dev-stage

text: infected bryozoa

characteristic: isolation-source

text: Tetracapsuloides bryosalmonae

text: spore sacs

text: Tetracapsuloides bryosalmonae spore sacs bryozoan stage


text: Chinese Academy of Medical Sciences & Peking Union Medical College

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: the first three stages of seed germination

text: Dendrobium officinale

text: seed

text: Dendrobium officinale day 35 symbiotic germinated SSH library


text: Chongqing University

characteristic: INSDC last update

text: live

text: Generic

text: To study molecular mechanism underline Brassica juncea var. tumida Tsen in response to Plasmodiophora brassicae infection, Suppression subtractive hybridization (SSH) associated with cDNA array dot bloting was used to screen differentially expressed genes .Total RNA from the Brassica juncea var. tumida Tsen roots inoculated with water was used to synthetize cDNA which used as driver (harvested at 10,15,20,25, 30 and 40 dpi),cDNA synthetized by total RNA which was extracted from Brassica juncea var. tumida Tsen roots inoculated with resting spores of P. brassicae used as tester (harvested at 10,15,20,25, 30 and 40 dpi).

text: harvested at 10,15,20,25,30 and 40 dpi (days post inoculation)

text: Brassica juncea var. tumida

text: root

text: Brassica juncea var. tumida SSH cDNA library

characteristic: vector


text: China Agricultural University

text: live

characteristic: INSDC status

text: Generic

text: Samantha

text: Rose flowers used were subjected to water deficit stress treatment

text: stage 2

text: Escherichia coli DH5alpha

characteristic: lab-host

text: Rosa hybrid cultivar

text: flower

text: Rose flowers responsive to WDS subtracted library

text: pGEM T-easy


Doubled haploid channel catfish

text: Auburn University Fish Molecular Genetic

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: A doubled haploid channel catfish, which has a set of two identical chromosomes, was used for RNA-Seq in this work. The cDNAs were made from pooled RNA samples collected from 19 tissues of the fish.

text: Ictalurus punctatus

text: Doubled haploid channel catfish for RNA-seq


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: SRA accession

text: Saccharomyces cerevisiae YB210

characteristic: description

text: Saccharomyces cerevisiae

characteristic: organism

characteristic: sample number

characteristic: strain

text: Generic sample from Saccharomyces cerevisiae


DLB

characteristic: External Id

text: Oil Crops Research Institute

text: live

text: Generic

text: Brassica napus

text: drought stress conditions

characteristic: title


SaWA

text: Oil Crops Research Institute

text: live

text: Generic

text: Brassica napus

text: rewatering growth conditions


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: ENCODE DCC

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: F

characteristic: cell sex

characteristic: controlid

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. Amy Murtha at Duke University

text: chorion cells (outermost of two fetal membranes), fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes.

text: extraembryonic mesoderm, trophectoderm

text: human

characteristic: cell organism

text: U

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

text: Homo sapiens

characteristic: organism

text: tier 1

text: Chorion


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: WiCell Research Institute

characteristic: biomaterial provider

text: stem cell

characteristic: biomaterial type

text: embryonic stem cell (hESC) H9

characteristic: cell description

text: human embryonic stem cell (hESC) H9

text: inner cell mass

characteristic: cell lineage

text: F

characteristic: cell sex

characteristic: controlid

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

characteristic: line

text: Homo sapiens

text: tier 1

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ScienCell

text: epidermal melanocytes

text: normal

characteristic: cell karyotype

text: ectoderm

text: U

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: Melano

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

characteristic: cell organism

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

text: cancer

text: ectoderm

characteristic: cell lineage

text: F

characteristic: cell sex

characteristic: controlid

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_HelaS3,p-value cutoff: 0.05

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

characteristic: title

characteristic: treatment

text: Interferon alpha treatment - 4 hours with 500 U/ml (Crawford)

text: 4 hours of 500 U/ml Interferon alpha (Crawford)


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: ATCC

text: prostate adenocarcinoma, LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma. - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

text: human

text: M

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: LNCaP

text: androgen

text: 12 hrs with 1 nM Methyltrienolone (R1881) (Crawford)

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

text: epidermal keratinocytes

text: normal

text: ectoderm

text: human

characteristic: cell organism

text: U

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

text: Homo sapiens

characteristic: organism

text: tier 1

text: NHEK


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Dr. Darrell Bigner at Duke University Medical Center

text: medulloblastoma (aka D721), surgical resection from a patient with medulloblastoma as described by Darrell Bigner (1997)

characteristic: cell description

text: Medulloblastoma (aka D721), surgical resection from a patient with medulloblastoma as described by Darrell Bigner (1997)

text: cancer

text: ectoderm

characteristic: cell lineage

text: U

characteristic: cell sex

characteristic: controlid

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1, input was generic_female (should have been male)

text: aligned to female and input was generic_female (should have been male),fseq v 1.84, iff_generic_female (should have been male),p-value cutoff: 0.05, input was generic_female (should have been male),baseAlignCounts.pl v 1, input was generic_female (should have been male)

text: Homo sapiens

text: tier 1

text: Medullo

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: ATCC

text: cancer

characteristic: cell karyotype

text: endoderm

text: human

text: M

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: LNCaP


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. Ming-Sound Tsao, Ontario Cancer Institute

characteristic: biomaterial provider

text: pancreatic duct cells immortalized with E6E7 gene of HPV

text: normal

text: endoderm

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Dr. Ravi Jhaveri at Duke University

text: Hepatocellular carcinoma

characteristic: cell description

text: hepatocellular carcinoma

text: cancer

text: endoderm

characteristic: cell lineage

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: ATCC

text: cervical carcinoma

text: cancer

characteristic: cell karyotype

text: ectoderm

text: F

characteristic: cell sex

characteristic: controlid

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_HelaS3,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

text: tier 1

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Charles H. Graham, Department of Anatomy & Cell Biology, Queen's University at Kingston, Kingston, Ontario, Canada

text: trophoblast (HTR-8/SVneo) cell line, a thin layer of ectoderm that forms the wall of many mammalian blastulas and functions in the nutrition and implantation of the embryo

text: normal

text: ectoderm

text: Blastula

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

text: umbilical vein endothelial cells

characteristic: cell description

text: normal

text: mesoderm

text: human

characteristic: cell organism

text: U

text: HUVEC/Input

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_HUVEC

text: Homo sapiens

text: tier 1

text: HUVEC


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Coriell

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, Treatment: Epstein-Barr Virus transformed

text: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

text: mesoderm

characteristic: cell lineage

text: F

characteristic: cell sex

characteristic: controlid

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ATCC

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

text: cancer

characteristic: cell karyotype

text: endoderm

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

text: Homo sapiens

characteristic: replicate

text: tier 1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Coriell

characteristic: biomaterial provider

text: Lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, Treatment: Epstein-Barr Virus transformed

text: lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

text: mesoderm

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: Homo sapiens

text: tier 1

characteristic: replicate description

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Lonza

text: osteoblasts (NHOst)

characteristic: cell description

text: normal human osteoblasts (NHOst)

text: normal

text: mesoderm

characteristic: cell lineage

text: U

characteristic: cell sex

characteristic: controlid

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1

text: Osteobl


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

characteristic: cell karyotype

text: mesoderm

text: human

characteristic: cell organism

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_K562

text: Homo sapiens

text: tier 1

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Coriell

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, Treatment: Epstein-Barr Virus transformed

text: mesoderm

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Coriell

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: F

characteristic: cell sex

characteristic: controlid

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: Coriell

text: mesoderm

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: Homo sapiens

text: tier 1

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: liver carcinoma

text: hepatocellular carcinoma

text: cancer

characteristic: cell karyotype

text: endoderm

text: M

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_HepG2,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: zen-bio

text: Primary Human Hepatocytes, liver perfused by enzymes to generate single cell suspension

characteristic: cell description

text: primary hepatocytes, liver perfused by enzymes to generate single cell suspension

text: normal

text: endoderm

characteristic: cell lineage

text: B

characteristic: cell sex

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1, input was generic_female (should have been male)

text: aligned to female and input was generic_female (should have been male),fseq v 1.84, iff_generic_female (should have been male),p-value cutoff: 0.05, input was generic_female (should have been male),baseAlignCounts.pl v 1, input was generic_female (should have been male)

text: Homo sapiens

text: tier 1

text: Hepatocytes


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: F

characteristic: controlid

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: baseAlignCounts.pl v 1,DNaseHS,fseq v 1.84, iff_GM12878,p-value cutoff: 0.05,1% ENCODE array platform validation tests

text: Homo sapiens

characteristic: organism

text: tier 1

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DSMZ

characteristic: biomaterial provider

text: human pancreas adenocarcinoma (PA-TU-8988T), established in 1985 from the liver metastasis of a primary pancreatic adenocarcinoma from a 64-year-old woman - DSMZ

text: cancer

text: endoderm

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female

text: Homo sapiens

text: tier 1

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Dr. Darrell Bigner at Duke University Medical Center

text: glioblastoma, these cells (aka H54 and D54) come from a surgical resection from a patient with glioblastoma multiforme (WHO Grade IV). D54 is a commonly studied glioblastoma cell line (Bao et al., 2006) that has been thoroughly described by S Bigner (1981). (PMID: 7252524)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

text: human

characteristic: cell organism

text: U

text: Gliobla/Input

text: DnaseSeq

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_H54,p-value cutoff: 0.05

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: Gliobla


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: ATCC

text: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

text: cancer

text: ectoderm

characteristic: cell lineage

text: F

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1

characteristic: treatment

text: 24 h with 1% p02 and 10mM Lactate, pH 6.7 (Crawford)

text: Hypoxia and Lactic acidosis: 1% p02 and 10 mM Lactate, pH of 6.7 for 24 hours (Crawford)


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. Ravi Jhaveri at Duke University

characteristic: biomaterial provider

text: hepatocellular carcinoma, hepatocytes selected for high levels of hepatitis C replication

text: Hepatocellular carcinoma, hepatocytes selected for high levels of hepatitis C replication

text: cancer

text: endoderm

text: M

characteristic: controlid

text: DnaseSeq

text: DNaseI HS Sequencing

characteristic: datatype description

text: align_on_cluster_bwa.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05

text: Homo sapiens

text: tier 1

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Dr. Steve Choi at Duke University

text: Human Hepatic Stellate Cells, Liver that was perfused with collagenase and sellected for hepatic stellate cells by density gradient

characteristic: cell description

text: hepatic stellate cells, liver that was perfused with collagenase and sellected for hepatic stellate cells by density gradient

text: normal

characteristic: cell karyotype

text: endoderm

text: F

text: DnaseSeq

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

text: Stellate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: ATCC

text: T-47D is a human epithelial cell line derived from an mammary ductal carcinoma.

text: epithelial cell line derived from a mammary ductal carcinoma.

text: cancer

text: F

characteristic: cell sex

text: DnaseSeq

characteristic: datatype

text: DNaseI HS Sequencing

text: align_on_cluster_bwa.pl v 1

text: Homo sapiens

characteristic: organism

text: tier 1


text: Ware Lab, Cold Spring Harbor Labs

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

characteristic: inbred

text: Zea mays

text: Maize whole root

characteristic: time point

text: whole root

characteristic: tissue

text: control

characteristic: treatment


text: Ware Lab, Cold Spring Harbor Labs

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Zea mays

text: Maize whole root

text: whole root

characteristic: title

text: waterlogging


characteristic: External Id

text: Whitehead Institute for Biomedical Research

characteristic: INSDC first public

text: live

text: Generic

characteristic: antibody

text: Abcam

characteristic: antibody manufacturer

text: 24 hours post fertilization

characteristic: developmental stage

text: wt

characteristic: genotype

text: Danio rerio

text: whole embryo at 24 hours post fertilization, H3K4me3 ChIP

text: whole embryo

text: H3K4me3 IP 24 hpf


characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Abcam

text: 72 hours post fertilization

text: wt

text: Danio rerio

characteristic: organism

text: whole embryo at 72 hours post fertilization, H3K4me3 ChIP

text: whole embryo

text: H3K4me3 IP 72 hpf


text: live

text: Generic

characteristic: SRA accession

text: Abcam

text: mixed gender adults

text: wt

text: Danio rerio

text: mixed gender adults, H3K4me3 ChIP

text: whole adult

text: H3K4me3 IP Adult


text: live

text: Generic

text: Abcam

text: 24 hours post fertilization

text: wt

text: Danio rerio

text: whole embryo at 24 hours post fertilization, H3K36me3 ChIP

text: whole embryo

characteristic: tissue

text: H3K36me3 IP 24 hpf


text: live

text: Generic

text: Abcam

text: 72 hours post fertilization

text: wt

text: Danio rerio

text: whole embryo at 72 hours post fertilization, H3K36me3 ChIP

text: whole embryo

text: H3K36me3 IP 72 hpf


text: live

text: Generic

text: Abcam

text: mixed gender adults

text: wt

text: Danio rerio

text: mixed gender adults, H3K36me3 ChIP

text: whole adult

text: H3K36me3 IP Adult


text: live

text: Generic

text: 24 hours post fertilization

text: wt

text: Danio rerio

text: whole embryo at 24 hours post fertilization, input

text: whole embryo

text: Input 24 hpf (control for H3K4me3)


text: live

text: Generic

text: 24 hours post fertilization

text: wt

text: Danio rerio

text: whole embryo

text: Input 24 hpf (control for H3K36me3)


text: live

text: Generic

text: 72 hours post fertilization

text: wt

text: Danio rerio

text: whole embryo at 72 hours post fertilization, input

text: whole embryo

text: Input 72 hpf (control for H3K4me3)


text: live

text: Generic

text: 72 hours post fertilization

text: wt

text: Danio rerio

text: whole embryo

text: Input 72 hpf (control for H3K36me3)


text: live

text: Generic

text: mixed gender adults

text: wt

text: Danio rerio

text: mixed gender adults, input

text: whole adult

text: Input Adult


text: live

text: Generic

text: 24 hours post fertilization

text: wt

text: Danio rerio

text: whole embryo at 24 hours post fertilization

text: whole embryo

text: Strand-specific RNA-Seq 24 hpf


text: live

text: Generic

text: 72 hours post fertilization

text: wt

text: Danio rerio

text: whole embryo at 72 hours post fertilization

text: whole embryo

text: Strand-specific RNA-Seq 72 hpf


text: live

text: Generic

text: 24 hours post fertilization

text: wt

text: Danio rerio

text: whole embryo

text: 3P-Seq 24 hpf


text: live

text: Generic

text: 72 hours post fertilization

text: wt

text: Danio rerio

text: whole embryo

text: 3P-Seq 72 hpf


text: live

text: Generic

text: mixed gender adults

text: wt

text: Danio rerio

text: mixed gender adults

text: whole adult

text: 3P-Seq Adult


text: Dept of BCMP, Harvard Medical School

text: live

text: Generic

text: ChIP-seq of Gcn4 using anti-Gcn4 antibody (Santa Cruz).

characteristic: description

text: Saccharomyces cerevisiae W303

text: Gcn4 ChIP-seq