text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Kia 1


status: PUBLIC

characteristic: External Id

text: GMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Full genome DNA of Arabidopsis thaliana from Sweden.

characteristic: description

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana individual sample Kor 3

characteristic: title


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Kor 4


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Kru 3


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Kva 2


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Lan 1


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Näs 2


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Nyl 13


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Öde 2


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Puk 1


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Puk 2


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Sim 1


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Spro 1


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Spro 2


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Spro 3


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Ste 2


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Ste 3


text: GMI

text: live

text: Generic

text: Full genome DNA of Arabidopsis thaliana from Sweden.

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Ste 4


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Tur 4


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample UllA 1


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample VårA 1


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Yst 1


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Ale-Stenar-41-1


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Ale-Stenar-44-4


text: GMI

text: live

text: Generic

text: Arabidopsis thaliana

text: Arabidopsis thaliana individual sample Ale-Stenar-56-14


text: Mayo Clinic

text: live

text: Generic

text: 2 days post fertilization

tag: attribute

characteristic: age

text: Segrest wild type

characteristic: genotype

text: Danio rerio

text: Zebrafish embryos/larvae

text: 2DPFETOH rep1

text: ethanol

characteristic: treatment


text: Mayo Clinic

text: live

text: Generic

text: 2 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 2DPFETOH rep2

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 2 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 2DPFETOH rep3

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 2 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 2DPFETOH rep4

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 2 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 2DPFETOH rep5

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 4 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 4DPFETOH rep1

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 4 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 4DPFETOH rep2

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 4 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 4DPFETOH rep3

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 4 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 4DPFETOH rep4

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 4 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 4DPFETOH rep5

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 6 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 6DPFETOH rep1

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 6 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 6DPFETOH rep2

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 6 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 6DPFETOH rep3

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 6 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 6DPFETOH rep4

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 6 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 6DPFETOH rep5

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 7 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 7DPFETOH rep1

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 7 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 7DPFETOH rep2

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 7 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 7DPFETOH rep3

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 7 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 7DPFETOH rep4

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 7 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 7DPFETOH rep5

text: ethanol


text: Mayo Clinic

text: live

text: Generic

text: 2 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 2DPFVD3 rep1


text: Mayo Clinic

text: live

text: Generic

text: 2 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 2DPFVD3 rep2


text: Mayo Clinic

text: live

text: Generic

text: 2 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 2DPFVD3 rep3


text: Mayo Clinic

text: live

text: Generic

text: 2 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 2DPFVD3 rep4


text: Mayo Clinic

text: live

text: Generic

text: 2 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 2DPFVD3 rep5


text: Mayo Clinic

text: live

text: Generic

text: 4 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 4DPFVD3 rep1


text: Mayo Clinic

text: live

text: Generic

text: 4 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 4DPFVD3 rep2


text: Mayo Clinic

text: live

text: Generic

text: 4 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 4DPFVD3 rep3


text: Mayo Clinic

text: live

text: Generic

text: 4 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 4DPFVD3 rep4


text: Mayo Clinic

text: live

text: Generic

text: 4 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 4DPFVD3 rep5


text: Mayo Clinic

text: live

text: Generic

text: 6 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 6DPFVD3 rep1


text: Mayo Clinic

text: live

text: Generic

text: 6 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 6DPFVD3 rep2


text: Mayo Clinic

text: live

text: Generic

text: 6 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 6DPFVD3 rep3


text: Mayo Clinic

text: live

text: Generic

text: 6 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 6DPFVD3 rep4


text: Mayo Clinic

text: live

text: Generic

text: 6 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 6DPFVD3 rep5


text: Mayo Clinic

text: live

text: Generic

text: 7 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 7DPFVD3 rep1


text: Mayo Clinic

text: live

text: Generic

text: 7 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 7DPFVD3 rep2


text: Mayo Clinic

text: live

text: Generic

text: 7 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 7DPFVD3 rep3


text: Mayo Clinic

text: live

text: Generic

text: 7 days post fertilization

text: Segrest wild type

text: Danio rerio

text: Zebrafish embryos/larvae

text: 7DPFVD3 rep4


name: Salmonella enterica subsp. enterica serovar Heidelberg str. N1536

text: Food and Drug Administration, Center for Food Safety and Applied Nutrition

text: live

text: Generic

characteristic: strain


name: 702099.11131.Genomic DNA.Corynebacterium pyruviciproducens 1773O

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Corynebacterium pyruviciproducens 1773O

characteristic: collaborator sample id

text: Corynebacterium pyruviciproducens ATCC BAA-1742

text: Genomic DNA

characteristic: sample type

text: Other

characteristic: sex

text: Corynebacterium pyruviciproducens 17730 Genomic DNA sample Corynebacterium pyruviciproducens 1773O


PRJNA28331.Corynebacterium sp. HFH0082

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: Corynebacterium sp. HFH0082

text: Corynebacterium sp. HFH0082

characteristic: sample name

text: Generic sample from Corynebacterium sp. HFH0082


LA1777 trichomes

text: Michigan State University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Total trichomes from stems and petioles of Solaum habrochaites LA1777

text: Solanum habrochaites

text: S. habrochaites LA1777 stem/petiole trichomes


PRJNA28331.Streptomyces sp. HGB0020

text: Broad Institute

text: live

text: Generic

text: Generic

text: Streptomyces sp. HGB0020

characteristic: organism

text: Streptomyces sp. HGB0020

text: Generic sample from Streptomyces sp. HGB0020

characteristic: title


PRJNA28331.Staphylococcus sp. HGB0015

text: Broad Institute

text: live

text: Generic

text: Generic

text: Staphylococcus sp. HGB0015

text: Staphylococcus sp. HGB0015

characteristic: strain

text: Generic sample from Staphylococcus sp. HGB0015


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Paenisporosarcina sp. HGH0030

text: Paenisporosarcina sp. HGH0030

text: Generic sample from Paenisporosarcina sp. HGH0030


PRJNA28331.Paenibacillus sp. HGH0039

text: Broad Institute

text: live

text: Generic

text: Generic

text: Paenibacillus sp. HGH0039

text: Paenibacillus sp. HGH0039

text: Generic sample from Paenibacillus sp. HGH0039


PRJNA28331.Coprococcus sp. HPP0074

text: Broad Institute

text: live

text: Generic

text: Generic

text: Coprococcus sp. HPP0074

text: Coprococcus sp. HPP0074

text: Generic sample from Coprococcus sp. HPP0074


PRJNA28331.Coprococcus sp. HPP0048

text: Broad Institute

text: live

text: Generic

text: Generic

text: Coprococcus sp. HPP0048

text: Coprococcus sp. HPP0048

text: Generic sample from Coprococcus sp. HPP0048


PRJNA28331.Bacteroides sp. HPS0048

text: Broad Institute

text: live

text: Generic

text: Generic

text: Bacteroides sp. HPS0048

text: Bacteroides sp. HPS0048

text: Generic sample from Bacteroides sp. HPS0048


text: EMBL Grenoble Outstation

text: live

text: Generic

characteristic: age

text: ACTA

characteristic: barcode

text: Fkbp6 +/-

characteristic: genotype/variation

text: Mus musculus

text: Anti-Mili (Reuter et al. 2009, Nat. Struct. Molec. Biol.)

characteristic: rip antibody

text: Mouse testis, P0

text: testis

characteristic: tissue

text: MILI IP P0 Fkbp6 Het


characteristic: External Id

text: EMBL Grenoble Outstation

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: CGGA

text: Fkbp6 -/-

text: Mus musculus

text: Mouse testis, P0

text: testis

text: MILI IP P0 Fkbp6 KO


text: EMBL Grenoble Outstation

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: ACTA

text: Fkbp6 +/-

text: Mus musculus

text: Mouse testis, P10

text: testis

text: MILI IP P10 Fkbp6 Het


text: EMBL Grenoble Outstation

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CGGA

text: Fkbp6 -/-

text: Mus musculus

text: Mouse testis, P10

text: testis

text: MILI IP P10 Fkbp6 KO


text: EMBL Grenoble Outstation

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Tdrd1 +/-

text: Mus musculus

text: Mouse testis, E18

text: testis

text: MILI IP E18 Tdrd1 Het


text: EMBL Grenoble Outstation

text: live

text: Generic

text: Tdrd1 -/-

text: Mus musculus

characteristic: organism

text: Mouse testis, E18

text: testis

text: MILI IP E18 Tdrd1 KO

characteristic: title


text: EMBL Grenoble Outstation

text: live

text: Generic

text: Tdrd1 +/-

text: Mus musculus

text: Anti Miwi2 (de Fazio et al. 2011, Nature)

text: Mouse testis, E18

characteristic: strain

text: testis

text: MIWI2 IP E18 Tdrd1 Het


text: EMBL Grenoble Outstation

text: live

text: Generic

characteristic: age

text: GTAA

text: Fkbp6 +/-

text: Mus musculus

text: Mouse testis, P0

text: testis

text: Total small RNAs (14-33nt) P0 Fkbp6 Het


text: EMBL Grenoble Outstation

text: live

text: Generic

text: TACA

characteristic: barcode

text: Fkbp6 -/-

text: Mus musculus

text: Mouse testis, P0

text: testis

text: Total small RNAs (14-33nt) P0 Fkbp6 KO


text: EMBL Grenoble Outstation

text: live

text: Generic

text: ACTA

characteristic: cell line

text: Bombyx mori

text: Anti-Siwi (Xiol et al. 2012, Mol. Cell)

text: Bombyx mori, BmN4 cells

text: Siwi IP Control

text: Control

characteristic: treatment protocol

text: control

characteristic: treatment time


characteristic: External Id

text: EMBL Grenoble Outstation

text: live

text: Generic

text: CGGA

text: Bombyx mori

text: Anti-Siwi (Xiol et al. 2012, Mol. Cell)

characteristic: rip antibody

text: Bombyx mori, BmN4 cells

text: Siwi IP GA

text: Geldanamycin

text: 4 days


text: EMBL Grenoble Outstation

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: TACA

text: Bombyx mori

text: Anti-Ago3 (Xiol et al. 2012, Mol. Cell)

text: Bombyx mori, BmN4 cells

text: Ago3 IP Control

text: Control

text: control


text: EMBL Grenoble Outstation

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: GTAA

text: Bombyx mori

text: Anti-Ago3 (Xiol et al. 2012, Mol. Cell)

text: Bombyx mori, BmN4 cells

text: Ago 3 IP GA, piRNAs

text: Geldanamycin

text: 4 days


text: EMBL Grenoble Outstation

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ACGC

text: Bombyx mori

text: Anti-Ago3 (Xiol et al. 2012, Mol. Cell)

text: Bombyx mori, BmN4 cells

text: Ago3 IP GA, ping-pong by-product #1

text: Geldanamycin

text: 4 days


text: EMBL Grenoble Outstation

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: GTAA

text: Bombyx mori

text: Anti-Ago3 (Xiol et al. 2012, Mol. Cell)

text: Bombyx mori, BmN4 cells

text: Ago3 IP GA, ping-pong by-product #2

text: Geldanamycin

text: 4 days


text: EMBL Grenoble Outstation

text: live

text: Generic

text: GTAA

text: Bombyx mori

characteristic: organism

text: Anti-Ago3 (Xiol et al. 2012, Mol. Cell)

text: Bombyx mori, BmN4 cells

text: Ago3 IP control, short RNAs (12-20nt)

characteristic: title

text: Control

text: control


text: EMBL Grenoble Outstation

text: live

text: Generic

text: Bombyx mori

text: Bombyx mori, BmN4 cells

text: Strand-specific polyA+ RNAseq, control

text: Control

text: control


text: EMBL Grenoble Outstation

text: live

text: Generic

text: Bombyx mori

text: Bombyx mori, BmN4 cells

text: Strand-specific polyA+ RNAseq, GA

text: Geldanamycin

text: 24 hours


text: EMBL Grenoble Outstation

text: live

text: Generic

text: ACTA

text: Bombyx mori

text: Anti-HA (Reuter et al. 2009, Nat. Struct. Molec. Biol.)

text: Bombyx mori, BmN4 cells

text: HA-Ago3 IP control

text: Control

text: control


text: EMBL Grenoble Outstation

text: live

text: Generic

text: CGGA

text: Bombyx mori

text: Bombyx mori, BmN4 cells

text: HA-Ago3 IP GA

text: Geldanamycin

text: 2 days


text: EMBL Grenoble Outstation

text: live

text: Generic

text: TACA

text: Bombyx mori

text: Bombyx mori, BmN4 cells

text: HA-Ago3 ADH IP control

text: Control

text: control


text: EMBL Grenoble Outstation

text: live

text: Generic

text: ACGC

text: Bombyx mori

text: Bombyx mori, BmN4 cells

text: HA-Ago3 ADH IP GA

text: Geldanamycin

text: 2 days


text: EMBL Grenoble Outstation

text: live

text: Generic

text: ACTA

text: Bombyx mori

text: Bombyx mori, BmN4 cells

text: HA-Ago3 R→ K IP control

text: Control

text: control


text: EMBL Grenoble Outstation

text: live

text: Generic

text: CGGA

text: Bombyx mori

text: Bombyx mori, BmN4 cells

text: HA-Ago3 R→ K IP GA

text: Geldanamycin

text: 2 days


text: Dr. Vivian G. Cheung Lab, Pediatrics&Genetics, HHMI/University of Michigan

text: live

text: Generic

characteristic: family

text: Homo sapiens

text: directional

characteristic: protocol

text: paternal grandmother

characteristic: relation

characteristic: sample

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: directional

text: maternal grandfather

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: non-directional

text: paternal grandmother

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: non-directional

text: mother

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: non-directional

text: paternal grandfather

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: non-directional

text: maternal grandfather

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: non-directional

text: maternal grandmother

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: non-directional

text: father

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: non-directional

text: proband

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: non-directional

text: twin sister

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: non-directional

text: twin brother

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: non-directional

text: daughter

text: cultured B-cells


text: live

text: Generic

text: Homo sapiens

text: non-directional

text: son

text: cultured B-cells


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Escherichia coli

characteristic: sample name

characteristic: strain

text: Generic sample from Escherichia coli


name: 661101.12947.Genomic DNA.Escherichia coli KTE183_A

characteristic: External Id

text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: Escherichia coli KTE183_A

characteristic: collaborator sample id

text: Escherichia coli KTE183

text: Genomic DNA

characteristic: sample type

text: Other

characteristic: sex

text: E. coli KTE183 Genomic DNA sample Escherichia coli KTE183_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE210_A

text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Generic

text: Escherichia coli KTE210_A

text: Escherichia coli KTE210

text: Genomic DNA

text: Other

text: E. coli KTE210 Genomic DNA sample Escherichia coli KTE210_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE205_A

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

text: Escherichia coli KTE205_A

text: Escherichia coli KTE205

characteristic: organism

text: Genomic DNA

text: Other

text: E. coli KTE205 Genomic DNA sample Escherichia coli KTE205_A

characteristic: title


name: 661101.12947.Genomic DNA.Escherichia coli KTE196_A

text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Escherichia coli KTE196_A

text: Escherichia coli KTE196

text: Genomic DNA

text: Other

text: E. coli KTE196 Genomic DNA sample Escherichia coli KTE196_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE182_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE182_A

text: Escherichia coli KTE182

text: Genomic DNA

text: Other

text: E. coli KTE182 Genomic DNA sample Escherichia coli KTE182_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE197_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE197_A

text: Escherichia coli KTE197

text: Genomic DNA

text: Other

text: E. coli KTE197 Genomic DNA sample Escherichia coli KTE197_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE204_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE204_A

text: Escherichia coli KTE204

text: Genomic DNA

text: Other

text: E. coli KTE204 Genomic DNA sample Escherichia coli KTE204_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE207_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE207_A

text: Escherichia coli KTE207

text: Genomic DNA

text: Other

text: E. coli KTE207 Genomic DNA sample Escherichia coli KTE207_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE194_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE194_A

text: Escherichia coli KTE194

text: Genomic DNA

text: Other

text: E. coli KTE194 Genomic DNA sample Escherichia coli KTE194_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE181_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE181_A

text: Escherichia coli KTE181

text: Genomic DNA

text: Other

text: E. coli KTE181 Genomic DNA sample Escherichia coli KTE181_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE212_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE212_A

text: Escherichia coli KTE212

text: Genomic DNA

text: Other

text: E. coli KTE212 Genomic DNA sample Escherichia coli KTE212_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE195_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE195_A

text: Escherichia coli KTE195

text: Genomic DNA

text: Other

text: E. coli KTE195 Genomic DNA sample Escherichia coli KTE195_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE206_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE206_A

text: Escherichia coli KTE206

text: Genomic DNA

text: Other

text: E. coli KTE206 Genomic DNA sample Escherichia coli KTE206_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE213_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE213_A

text: Escherichia coli KTE213

text: Genomic DNA

text: Other

text: E. coli KTE213 Genomic DNA sample Escherichia coli KTE213_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE186_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE186_A

text: Escherichia coli KTE186

text: Genomic DNA

text: Other

text: E. coli KTE186 Genomic DNA sample Escherichia coli KTE186_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE215_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE215_A

text: Escherichia coli KTE215

text: Genomic DNA

text: Other

text: E. coli KTE215 Genomic DNA sample Escherichia coli KTE215_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE200_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE200_A

text: Escherichia coli KTE200

text: Genomic DNA

text: Other

text: E. coli KTE200 Genomic DNA sample Escherichia coli KTE200_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE193_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE193_A

text: Escherichia coli KTE193

text: Genomic DNA

text: Other

text: E. coli KTE193 Genomic DNA sample Escherichia coli KTE193_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE214_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE214_A

text: Escherichia coli KTE214

text: Genomic DNA

text: Other

text: E. coli KTE214 Genomic DNA sample Escherichia coli KTE214_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE187_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE187_A

text: Escherichia coli KTE187

text: Genomic DNA

text: Other

text: E. coli KTE187 Genomic DNA sample Escherichia coli KTE187_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE192_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE192_A

text: Escherichia coli KTE192

text: Genomic DNA

text: Other

text: E. coli KTE192 Genomic DNA sample Escherichia coli KTE192_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE201_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE201_A

text: Escherichia coli KTE201

text: Genomic DNA

text: Other

text: E. coli KTE201 Genomic DNA sample Escherichia coli KTE201_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE202_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE202_A

text: Escherichia coli KTE202

text: Genomic DNA

text: Other

text: E. coli KTE202 Genomic DNA sample Escherichia coli KTE202_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE191_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE191_A

text: Escherichia coli KTE191

text: Genomic DNA

text: Other

text: E. coli KTE191 Genomic DNA sample Escherichia coli KTE191_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE184_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE184_A

text: Escherichia coli KTE184

text: Genomic DNA

text: Other

text: E. coli KTE184 Genomic DNA sample Escherichia coli KTE184_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE229_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE229_A

text: Escherichia coli KTE229

text: Genomic DNA

text: Other

text: E. coli KTE229 Genomic DNA sample Escherichia coli KTE229_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE217_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE217_A

text: Escherichia coli KTE217

text: Genomic DNA

text: Other

text: E. coli KTE217 Genomic DNA sample Escherichia coli KTE217_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE190_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE190_A

text: Escherichia coli KTE190

text: Genomic DNA

text: Other

text: E. coli KTE190 Genomic DNA sample Escherichia coli KTE190_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE203_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE203_A

text: Escherichia coli KTE203

text: Genomic DNA

text: Other

text: E. coli KTE203 Genomic DNA sample Escherichia coli KTE203_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE216_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE216_A

text: Escherichia coli KTE216

text: Genomic DNA

text: Other

text: E. coli KTE216 Genomic DNA sample Escherichia coli KTE216_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE185_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE185_A

text: Escherichia coli KTE185

text: Genomic DNA

text: Other

text: E. coli KTE185 Genomic DNA sample Escherichia coli KTE185_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE228_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE228_A

text: Escherichia coli KTE228

text: Genomic DNA

text: Other

text: E. coli KTE228 Genomic DNA sample Escherichia coli KTE228_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE224_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE224_A

text: Escherichia coli KTE224

text: Genomic DNA

text: Other

text: E. coli KTE224 Genomic DNA sample Escherichia coli KTE224_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE189_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE189_A

text: Escherichia coli KTE189

text: Genomic DNA

text: Other

text: E. coli KTE189 Genomic DNA sample Escherichia coli KTE189_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE225_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE225_A

text: Escherichia coli KTE225

text: Genomic DNA

text: Other

text: E. coli KTE225 Genomic DNA sample Escherichia coli KTE225_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE188_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE188_A

text: Escherichia coli KTE188

text: Genomic DNA

text: Other

text: E. coli KTE188 Genomic DNA sample Escherichia coli KTE188_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE230_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE230_A

text: Escherichia coli KTE230

text: Genomic DNA

text: Other

text: E. coli KTE230 Genomic DNA sample Escherichia coli KTE230_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE233_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE233_A

text: Escherichia coli KTE233

text: Genomic DNA

text: Other

text: E. coli KTE233 Genomic DNA sample Escherichia coli KTE233_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE218_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE218_A

text: Escherichia coli KTE218

text: Genomic DNA

text: Other

text: E. coli KTE218 Genomic DNA sample Escherichia coli KTE218_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE173_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE173_A

text: Escherichia coli KTE173

text: Genomic DNA

text: Other

text: E. coli KTE173 Genomic DNA sample Escherichia coli KTE173_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE226_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE226_A

text: Escherichia coli KTE226

text: Genomic DNA

text: Other

text: E. coli KTE226 Genomic DNA sample Escherichia coli KTE226_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE219_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE219_A

text: Escherichia coli KTE219

text: Genomic DNA

text: Other

text: E. coli KTE219 Genomic DNA sample Escherichia coli KTE219_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE221_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE221_A

text: Escherichia coli KTE221

text: Genomic DNA

text: Other

text: E. coli KTE221 Genomic DNA sample Escherichia coli KTE221_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE234_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE234_A

text: Escherichia coli KTE234

text: Genomic DNA

text: Other

text: E. coli KTE234 Genomic DNA sample Escherichia coli KTE234_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE199_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE199_A

text: Escherichia coli KTE199

text: Genomic DNA

text: Other

text: E. coli KTE199 Genomic DNA sample Escherichia coli KTE199_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE175_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE175_A

text: Escherichia coli KTE175

text: Genomic DNA

text: Other

text: E. coli KTE175 Genomic DNA sample Escherichia coli KTE175_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE220_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE220_A

text: Escherichia coli KTE220

text: Genomic DNA

text: Other

text: E. coli KTE220 Genomic DNA sample Escherichia coli KTE220_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE235_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE235_A

text: Escherichia coli KTE235

text: Genomic DNA

text: Other

text: E. coli KTE235 Genomic DNA sample Escherichia coli KTE235_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE198_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE198_A

text: Escherichia coli KTE198

text: Genomic DNA

text: Other

text: E. coli KTE198 Genomic DNA sample Escherichia coli KTE198_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE236_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE236_A

text: Escherichia coli KTE236

text: Genomic DNA

text: Other

text: E. coli KTE236 Genomic DNA sample Escherichia coli KTE236_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE208_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE208_A

text: Escherichia coli KTE208

text: Genomic DNA

text: Other

text: E. coli KTE208 Genomic DNA sample Escherichia coli KTE208_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE240_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE240_A

text: Escherichia coli KTE240

text: Genomic DNA

text: Other

text: E. coli KTE240 Genomic DNA sample Escherichia coli KTE240_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE209_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE209_A

text: Escherichia coli KTE209

text: Genomic DNA

text: Other

text: E. coli KTE209 Genomic DNA sample Escherichia coli KTE209_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE237_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE237_A

text: Escherichia coli KTE237

text: Genomic DNA

text: Other

text: E. coli KTE237 Genomic DNA sample Escherichia coli KTE237_A


name: 661101.12947.Genomic DNA.Escherichia coli KTE222_A

text: Broad Institute

text: live

text: Generic

text: Generic

text: Escherichia coli KTE222_A

text: Escherichia coli KTE222

text: Genomic DNA

text: Other

text: E. coli KTE222 Genomic DNA sample Escherichia coli KTE222_A


text: Broad Institute

text: live

text: Generic

text: Generic

characteristic: sample name

text: Erdman

text: Generic sample from Mycobacterium tuberculosis str. Erdman = ATCC 35801


text: Broad Institute

text: live

text: Generic

text: Generic

text: Mycobacterium tuberculosis str. Erdman = ATCC 35801

text: Erdman

characteristic: strain


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Generic

text: Mycobacterium tuberculosis H37Rv

text: Generic sample from Mycobacterium tuberculosis H37Rv


text: Oil Crop Research Institute, Chinese Academy of Agricultural Sciences

characteristic: INSDC center name

text: live

text: Generic

characteristic: cultivar

text: root

characteristic: organ

text: Arachis hypogaea

text: peanut roots response to Rastonia solanacearum infection forward SSH library


text: Guangdong Pharmaceutical University

text: live

text: Generic

text: Fallopia multiflora

text: F. multiflora gDNA subtractive hybridization library


text: Purdue University

text: live

text: Generic

text: all leaf tissues

characteristic: cell type

text: mature trees

characteristic: dev-stage

text: Juglans nigra

text: leaves

characteristic: tissue-type

text: Juglans nigra microsatellite library


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: high molecular weight genomic DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: peripheral blood granulocytes

characteristic: body site

text: not applicable (if normal DNA)

characteristic: histological type

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: Case-Control

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor high molecular weight genomic DNA sample from peripheral blood granulocytes of a human participant in the dbGaP study Genome-Wide Analysis of Splenic Marginal Zone Lymphoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: high molecular weight genomic DNA

text: frozen spleen biopsy

text: Splenic marginal zone lymphoma

text: Yes

text: SNP Genotypes (Array)

text: Homo sapiens

characteristic: organism

text: Case-Control

text: Tumor high molecular weight genomic DNA sample from frozen spleen biopsy of a human participant in the dbGaP study Genome-Wide Analysis of Splenic Marginal Zone Lymphoma

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: high molecular weight genomic DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: frozen spleen biopsy

characteristic: body site

text: Splenic marginal zone lymphoma

text: Yes

text: SNP Genotypes (Array)

text: Homo sapiens

text: Case-Control

text: Genome-Wide Analysis of Splenic Marginal Zone Lymphoma


text: dbGaP

text: live

text: Generic

text: high molecular weight genomic DNA

text: saliva

text: not applicable (if normal DNA)

characteristic: histological type

text: No

characteristic: is tumor

text: SNP Genotypes (Array)

characteristic: molecular data type

text: Homo sapiens

text: Case-Control

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

text: Non-tumor high molecular weight genomic DNA sample from saliva of a human participant in the dbGaP study Genome-Wide Analysis of Splenic Marginal Zone Lymphoma


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: high molecular weight genomic DNA

text: peripheral blood granulocytes

text: not applicable (if normal DNA)

text: No

text: SNP Genotypes (Array)

text: Homo sapiens

text: Case-Control

characteristic: submitter handle


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

text: brain

text: GRU-MDS

text: primary glioblastoma multiforme tumor stem cell lines

text: Yes

text: Homo sapiens

characteristic: organism

text: Case Set

text: Tumor RNA sample from brain of a human participant in the dbGaP study Gene Fusion Discovery through RNA Sequencing of Human Glioblastoma Stem Cell Lines

characteristic: title


text: dbGaP

text: live

text: Generic

text: RNA

characteristic: biospecimen repository sample id

text: brain

characteristic: body site

text: GRU-MDS

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: Case Set

characteristic: study design

text: Gene Fusion Discovery through RNA Sequencing of Human Glioblastoma Stem Cell Lines

characteristic: study name


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Brain

text: PCR

text: Yes

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

characteristic: submitted sample id

characteristic: submitted subject id

text: Tumor DNA sample from Brain of a human male participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

text: Blood

text: PCR

text: No

text: Homo sapiens

text: male

text: Case-Control

characteristic: submitter handle

text: Non-tumor DNA sample from Blood of a human male participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Brain

characteristic: body site

text: PCR

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: male

text: Case-Control

text: Genomic Sequencing of Pediatric Rhabdoid Cancers

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Blood

text: PCR

text: No

text: Homo sapiens

text: male

text: Case-Control

characteristic: study design

characteristic: study name


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: DNA

text: Soft tissue

text: DS-CA-MDS

text: Yes

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

characteristic: submitted sample id

characteristic: submitted subject id

text: Tumor DNA sample from Soft tissue of a human female participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Brain

text: PCR

text: Yes

text: Homo sapiens

text: female

text: Case-Control

characteristic: submitter handle

text: Tumor DNA sample from Brain of a human female participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Blood

characteristic: body site

text: PCR

text: No

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: female

text: Case-Control

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Kidney

text: PCR

text: Yes

text: Homo sapiens

text: male

text: Case-Control

characteristic: study design

characteristic: study name

text: Tumor DNA sample from Kidney of a human male participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Blood

text: DS-CA-MDS

text: No

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

characteristic: submitted sample id

characteristic: submitted subject id


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Bladder

text: PCR

text: Yes

text: Homo sapiens

text: male

text: Case-Control

characteristic: submitter handle

text: Tumor DNA sample from Bladder of a human male participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: Paraspinal

characteristic: body site

text: PCR

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: female

text: Case-Control

text: Tumor DNA sample from Paraspinal of a human female participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: Thoracic

text: PCR

text: Yes

text: Homo sapiens

text: male

text: Case-Control

characteristic: study design

characteristic: study name

text: Tumor DNA sample from Thoracic of a human male participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: DNA

text: Soft tissue

text: DS-CA-MDS

text: Yes

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

characteristic: submitted sample id

characteristic: submitted subject id

text: Tumor DNA sample from Soft tissue of a human male participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Liver

text: PCR

text: Yes

text: Homo sapiens

text: female

text: Case-Control

characteristic: submitter handle

text: Tumor DNA sample from Liver of a human female participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: Blood

characteristic: body site

text: DS-CA-MDS

text: No

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: male

text: Case-Control

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: Retroperitoneal

text: PCR

text: Yes

text: Homo sapiens

text: male

text: Case-Control

characteristic: study design

characteristic: study name

text: Tumor DNA sample from Retroperitoneal of a human male participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: DNA

text: Kidney

text: PCR

text: Yes

text: Homo sapiens

text: female

characteristic: sex

text: Case-Control

characteristic: submitted sample id

characteristic: submitted subject id

text: Tumor DNA sample from Kidney of a human female participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Supraclavicular

text: PCR

text: Yes

text: Homo sapiens

text: female

text: Case-Control

characteristic: submitter handle

text: Tumor DNA sample from Supraclavicular of a human female participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Bladder

characteristic: body site

text: PCR

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: female

text: Case-Control

text: Tumor DNA sample from Bladder of a human female participant in the dbGaP study Genomic Sequencing of Pediatric Rhabdoid Cancers

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: HTG

text: SNP Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: male

text: Mendelian

characteristic: study design

text: Hypertriglyceridemia

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

text: DNA sample from a human male participant in the dbGaP study Treatment of Genetic Screening of Hypertriglyceridemia type I, III, and V - HTG Amsterdam


text: dbGaP

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HTG

text: SNP Genotypes (NGS)

text: Homo sapiens

text: male

characteristic: sex

text: Mendelian

text: Hypertriglyceridemia

text: Treatment of Genetic Screening of Hypertriglyceridemia type I, III, and V - HTG Amsterdam

text: Yes

characteristic: submitted sample id

characteristic: submitted subject id


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: HTG

text: SNP Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: female

text: Mendelian

text: Hypertriglyceridemia

text: Yes

characteristic: submitter handle

text: DNA sample from a human female participant in the dbGaP study Treatment of Genetic Screening of Hypertriglyceridemia type I, III, and V - HTG Amsterdam

characteristic: title


IMCG

text: Inner Mongolia University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Cashmere goat as an important livestock, serve as good non-model system for hair growth study and hair biology, and the characterization of modulators associated with cashmere fiber growth was restricted by limited gene resources in the public database. Therefore, extensive transcriptomic sequences are needed. The skin tissue sampled from body side part of the trunk coat was subject to RNA-Seq using Illumina technology.

characteristic: description

text: Capra hircus

text: The body side skin part of body coat of the cashmere goat during anagen phase


IMCG-ANA-BL

text: Inner Mongolia University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Cashmere goat as an important livestock, serve as good non-model system for hair growth study and hair biology, and the characterization of modulators associated with cashmere fiber growth was restricted by limited gene resources in the public database. Therefore, extensive transcriptomic sequences are needed. The skin tissue sampled from belly part of the body coat was subject to RNA-Seq using Illumina technology.

text: Capra hircus

text: The belly skin part of body coat of the cashmere goat during anagen phase


IMCG-ANA-BK

text: Inner Mongolia University

text: live

text: Generic

text: Cashmere goat as an important livestock, serve as good non-model system for hair growth study and hair biology, and the characterization of modulators associated with cashmere fiber growth was restricted by limited gene resources in the public database. Therefore, extensive transcriptomic sequences are needed. The skin tissue sampled from back(dorsal) part of the body coat was subject to RNA-Seq using Illumina technology.

text: Capra hircus

text: The back skin part of body coat of the cashmere goat during anagen phase


IMCG-ANA-BS

text: Inner Mongolia University

text: live

text: Generic

text: Capra hircus

text: The body side skin part of trunk coat of the cashmere goat during anagen phase


Arabidopsis halleri gemmifera

text: Dean Lab - University of Southern California

text: live

text: Generic

text: Arabidopsis halleri subsp. gemmifera

text: Arabidopsis halleri gemmifera


text: University of Southern California

text: live

text: Generic

text: From population 7 of Tunisian collection

text: Medicago truncatula

text: Mtr WGS TN7.22


Arabidopsis kamchatica Alaska

text: live

text: Generic

text: Arabidopsis kamchatica

text: Arabidopsis kamchatica Alaska


Arabidopsis kamchatica British Columbia

text: live

text: Generic

text: Arabidopsis kamchatica

text: Arabidopsis kamchatica British Columbia


Arabidopsis kamchatica Japan

text: live

text: Generic

text: Arabidopsis kamchatica subsp. kawasakiana

text: Arabidopsis kamchatica Japan


Vibrio aestivus CECT 7558

text: University of Valencia

text: live

text: Generic

text: Random partial genome sequencing of strain CECT 7558, type of the species Vibrio aestivus

text: Vibrio sp.

text: Vibrio aestivus CECT 7558


text: Peter H. Quail, Plant and Microbial Biology, UC Berkeley

text: live

text: Generic

characteristic: developmental satge

text: WT

characteristic: genotype

text: true dark

characteristic: growth conditions

text: Arabidopsis thaliana

text: whole seedlings


text: live

text: Generic

text: true dark

text: Arabidopsis thaliana

text: whole seedlings


text: live

text: Generic

text: pif1pif4pif5 (pif145)

text: true dark

text: Arabidopsis thaliana

text: whole seedlings


text: live

text: Generic

text: pif1pif3pif4pif5 (pifq)

text: true dark

text: Arabidopsis thaliana

text: whole seedlings


text: live

text: Generic

text: anti-Myc (Abcam, ab9132)

characteristic: chip antibody

text: true dark

text: Arabidopsis thaliana

text: whole seedlings


characteristic: External Id

text: live

text: Generic

text: anti-Myc (Abcam, ab9132)

text: WT

text: true dark

text: Arabidopsis thaliana

text: whole seedlings


name: Drosophila simulans strain w501 500bp PE library

text: princeton university

characteristic: INSDC center name

text: live

text: Generic

text: Drosophila simulans

characteristic: strain


IMCG-ANA-BL

text: Inner Mongolia University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: 2 years

characteristic: age

text: belly skin

characteristic: body site

text: China: Ulan Town, Erdos, Inner Mongolia Autonomous Region

characteristic: geo loc name

text: breeding adult

characteristic: growth stage

text: anagen

characteristic: hair growth stage

text: ear tag #9332

characteristic: label

text: Capra hircus

text: female

characteristic: sex

text: skin

characteristic: tissue type

text: Sample from Capra hircus belly skin during anagen


IMCG-ANA-BK

text: Inner Mongolia University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 2 years

text: back skin

text: breeding adult

text: anagen

text: ear tag #9332

text: Capra hircus

characteristic: organism

text: female

text: skin

text: Sample from Capra hircus back skin during anagen

characteristic: title


IMCG-ANA-BS

characteristic: External Id

text: Inner Mongolia University

characteristic: INSDC center name

text: live

text: Generic

text: 2 years

text: body side skin

text: breeding adult

text: anagen

text: ear tag #9332

text: Capra hircus

text: female

text: skin

text: Sample from Capra hircus body side skin during anagen


IMCG

text: Inner Mongolia University

characteristic: INSDC first public

text: live

text: Generic

text: 2 years

text: body side skin

text: breeding adult

text: anagen

text: ear tag #9332

text: Capra hircus

text: female

text: skin


BCM-DGRPBerkeley

text: Baylor College of Medicine

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: Drosophila melanogaster DGRP-Berkeley

characteristic: description

text: Drosophila melanogaster

text: whole individuals

characteristic: source of DNA

text: DGRP-Berkeley

characteristic: strain

text: Sample from Drosophila melanogaster


text: National Research Council of Canada

text: live

text: Generic

text: Brassica napus

text: B. napus whole seed small RNA 10DAF


text: National Research Council of Canada

text: live

text: Generic

text: Brassica napus

text: B. napus whole seed small RNA 15DAF


text: National Research Council of Canada

text: live

text: Generic

text: Brassica napus

text: B. napus whole seed small RNA 20DAF


text: National Research Council of Canada

text: live

text: Generic

text: Brassica napus

text: B. napus whole seed small RNA 25DAF


text: transgene not reactivated by RNAi against prg-1

text: Hubrecht Institute

text: live

text: Generic

text: adult stage

characteristic: age

text: Caenorhabditis elegans

text: Complete worms

text: Bristol N2 background

text: RNA was not treated with any enzyme before ligation procedures

characteristic: treatment


text: transgene reactivates upon RNAi against prg-1

text: Hubrecht Institute

text: live

characteristic: INSDC status

text: Generic

text: adult stage

text: Caenorhabditis elegans

text: Complete worms

text: Bristol N2 background


text: Information and Computational Sciences, The James Hutton Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: biological replicate

text: short day

characteristic: day length

text: Solanum tuberosum

text: leaf

text: SD leaf BR1


text: live

text: Generic

characteristic: NCBI submission package

text: short day

text: Solanum tuberosum

characteristic: organism

text: leaf

text: SD leaf BR2

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: short day

text: Solanum tuberosum

text: leaf

text: SD leaf BR3


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: long day

text: Solanum tuberosum

text: leaf

text: LD leaf BR1


text: live

text: Generic

text: long day

text: Solanum tuberosum

text: leaf

text: LD leaf BR2


text: live

text: Generic

text: long day

text: Solanum tuberosum

text: leaf

text: LD leaf BR3


text: live

text: Generic

text: short day

text: Solanum tuberosum

text: stolon

text: stolon SD BR1


text: live

text: Generic

text: short day

text: Solanum tuberosum

text: stolon

text: stolon SD BR2


text: live

text: Generic

text: short day

text: Solanum tuberosum

text: stolon

text: stolon SD BR3


text: live

text: Generic

text: short day

text: Solanum tuberosum

text: swollen stolon

text: swollen stolon BR1


text: live

text: Generic

text: short day

text: Solanum tuberosum

text: swollen stolon

text: swollen stolon BR2


text: live

text: Generic

text: short day

text: Solanum tuberosum

text: swollen stolon

text: swollen stolon BR3


text: National Research Council of Canada

text: live

text: Generic

text: Brassica napus

text: B. napus whole seed small RNA 30DAF


text: National Research Council of Canada

text: live

text: Generic

text: Brassica napus

text: B. napus whole seed small RNA 35DAF


text: National Research Council of Canada

text: live

text: Generic

text: Brassica napus

text: B. napus whole seed small RNA 40DAF


text: National Research Council of Canada

text: live

text: Generic

text: Brassica napus

text: B. napus whole seed small RNA 45DAF


text: National Research Council of Canada

text: live

text: Generic

text: Brassica napus

text: B. napus whole seed small RNA 50DAF


text: National Research Council of Canada

text: live

text: Generic

text: Brassica napus

text: B. napus small RNA Flower Bud


text: Virginia Bioinformatics Institute

text: live

text: Generic

text: Wild-type

characteristic: genotype

text: Negative control (uninfected)

characteristic: infection

text: Mus musculus

characteristic: sampling day

text: Colon; uninfected WT mice; replicate 1

text: colon

characteristic: tissue


text: Virginia Bioinformatics Institute

text: live

characteristic: INSDC status

text: Generic

text: Wild-type

text: Negative control (uninfected)

text: Mus musculus

text: Colon; uninfected WT mice; replicate 2

characteristic: strain

text: colon


text: Virginia Bioinformatics Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Wild-type

text: Negative control (uninfected)

text: Mus musculus

text: Colon; uninfected WT mice; replicate 3

text: colon


text: Virginia Bioinformatics Institute

text: live

text: Generic

text: Wild-type

text: C. difficile-infected (107 cfu/mouse)

text: Mus musculus

text: Colon; Clostridium difficile infected WT mice; replicate 1

text: colon


text: Virginia Bioinformatics Institute

text: live

text: Generic

text: Wild-type

text: C. difficile-infected (107 cfu/mouse)

text: Mus musculus

text: Colon; Clostridium difficile infected WT mice; replicate 2

text: colon


text: Virginia Bioinformatics Institute

text: live

text: Generic

text: Wild-type

text: C. difficile-infected (107 cfu/mouse)

text: Mus musculus

text: Colon; Clostridium difficile infected WT mice; replicate 3

text: colon


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: March, 2007

characteristic: date

text: air metagenome

characteristic: sample number

text: Bowling Green

characteristic: station

text: New York City Subways Air Survey station Bowling Green


characteristic: External Id

text: MCDB, U of Colorado

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: August, 2007

text: air metagenome

characteristic: organism

text: Bowling Green

characteristic: title


text: MCDB, U of Colorado

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: August, 2008

text: air metagenome

text: Bowling Green


text: MCDB, U of Colorado

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: August, 2008

text: air metagenome

text: Union Square

text: New York City Subways Air Survey station Union Square


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: August, 2007

text: air metagenome

text: Union 14

text: New York City Subways Air Survey station Union 14


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: August, 2008

text: air metagenome

text: Union 14


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: March, 2007

text: air metagenome

text: Union 14


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: March, 2007

text: air metagenome

text: City Hall

text: New York City Subways Air Survey station City Hall


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: August, 2008

text: air metagenome

text: City Hall


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: August, 2007

text: air metagenome

text: Grand Central Mezzanine

text: New York City Subways Air Survey station Grand Central Mezzanine


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: August, 2008

text: air metagenome

text: Grand Central Mezzanine


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: March, 2007

text: air metagenome

text: Grand Central 7

text: New York City Subways Air Survey station Grand Central 7


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: August, 2008

text: air metagenome

text: Grand Central 7


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: August, 2007

text: air metagenome

text: Grand Central 7


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: March, 2007

text: air metagenome

text: Grand Central 456

text: New York City Subways Air Survey station Grand Central 456


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: August, 2008

text: air metagenome

text: Grand Central 456


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: March, 2007

text: air metagenome

text: Times Square

text: New York City Subways Air Survey station Times Square


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: August, 2007

text: air metagenome

text: Times Square


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: August, 2008

text: air metagenome

text: Times Square


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: August, 2007

text: air metagenome

text: Chambers

text: New York City Subways Air Survey station Chambers


text: MCDB, U of Colorado

text: live

text: Generic

text: Generic

text: March, 2007

text: air metagenome

text: Chambers


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Drosophila melanogaster DGRP-385

characteristic: description

text: Drosophila melanogaster

text: whole individuals

characteristic: source of DNA

text: Sample from Drosophila melanogaster


text: Zaret lab, Cell and Developmental Biology, University of Pennsylvania School of Medicine

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody

characteristic: cell type

text: asynchronous

characteristic: cycling state

text: Homo sapiens

text: HuH7 cells, asynchronously cycling

text: FoxA1 ChIP-seq in Asynchronous Cells 1

text: Abcam ab23738 (lot #737921)

characteristic: vendor/catalog/lot


text: live

text: Generic

characteristic: NCBI submission model

text: asynchronous

text: Homo sapiens

text: HuH7 cells, asynchronously cycling

text: FoxA1 ChIP-seq in Asynchronous Cells 2

text: Abcam ab23738 (lot #737921)


characteristic: External Id

text: live

text: Generic

text: asynchronous

text: Homo sapiens

text: HuH7 cells, asynchronously cycling

text: FoxA1 ChIP-seq in Asynchronous Cells 3

text: Abcam ab23738 (lot #737921)


text: live

text: Generic

characteristic: NCBI submission package

text: mitotic

text: Homo sapiens

text: HuH7 cells, mitotic block and release

text: FoxA1 ChIP-seq in Mitotic Cells 1

text: Abcam ab23738 (lot #737921)


text: live

text: Generic

text: mitotic

text: Homo sapiens

characteristic: organism

text: HuH7 cells, mitotic block and release

text: FoxA1 ChIP-seq in Mitotic Cells 2

text: Abcam ab23738 (lot #737921)


text: live

text: Generic

text: mitotic

text: Homo sapiens

text: HuH7 cells, mitotic block and release

text: FoxA1 ChIP-seq in Mitotic Cells 3

characteristic: title

text: Abcam ab23738 (lot #737921)


characteristic: INSDC center name

text: live

text: Generic

text: asynchronous

text: Homo sapiens

text: HuH7 cells, asynchronously cycling

text: Input in Asynchronous Cells


characteristic: INSDC first public

text: live

text: Generic

text: mitotic

text: Homo sapiens

text: HuH7 cells, mitotic block and release

text: Input in Mitotic Cells


text: University of Texas at Austin

characteristic: INSDC last update

text: live

text: Generic

characteristic: collection date

text: Panama: Greenhouse, Gamboa

characteristic: geo loc name

text: fungal garden

characteristic: isolation-source

text: ant metagenome

text: Bacterial communities of the attine ant Mycocepurus smithii, its fungus gardens, nest wall soil, and adjunct soil

characteristic: project name

text: Mycocepurus smithii fungus garden piece from the center of a complete garden

characteristic: sample description

text: Generic sample from ant metaganome


text: University of Texas at Austin

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Panama: Apartment183, Gamboa

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:KK100411-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Apartment183, Gamboa

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:KK100411-02

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Apartment183, Gamboa

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:KK100419-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Achiote

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:TAL100404-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Casa Verde

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:UGM100409-05

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Gatun

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:TAL100406-03

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Greenhouse, Gamboa

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:UGM100403-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Greenhouse, Gamboa

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:RS100403-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:TAL100408-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:UGM100408-04

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:UGM100402-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:KK100402-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:UGM100402-02

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: nest wall soil

text: ant metagenome

text: Mycocepurus smithii soil from garden chamber>source colony:RS100412-07

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Greenhouse, Gamboa

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden piece from the edge of a complete garden>source colony:RS100413-02

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Achiote

text: fungal garden

text: ant metagenome

text: Bacterial communities of the attine ant Mycocepurus smithii, its fungus gardens, nest wall soil, and adjunct soil

text: Mycocepurus smithii fungus garden>source colony: UGM100404-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Achiote

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden>source colony: RS100404-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Achiote

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden>source colony: TAL100404-02

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Achiote

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden>source colony: TAL100404-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Gatun

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden>source colony: UGM100406-1

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Greenhouse, Gamboa

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden>source colony: UGM100403-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Greenhouse, Gamboa

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden>source colony: RS100403-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus gardensource colony: RS100412-07

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden>source colony: UGM100402-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden>source colony: KK100402-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden>source colony: UGM100402-02

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden>source colony: RS100412-07

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: blank sample

text: ant metagenome

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: blank sample

text: ant metagenome

text: blank Ethanol vial>used as negative control

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Achiote

text: blank sample

text: ant metagenome

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Casa Verde

text: blank sample

text: ant metagenome

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Gatun

text: blank sample

text: ant metagenome

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Greenhouse, Gamboa

text: blank sample

text: ant metagenome

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: blank sample

text: ant metagenome

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Greenhouse, Gamboa

text: fungal garden

text: ant metagenome

text: Mycocepurus smithii fungus garden piece from the side (between edge and center) of a complete garden>source colony:RS100413-02

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Apartment183, Gamboa

text: soil

text: ant metagenome

text: Soil>1m of Mycocepurus smithii nest KK100419-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Apartment183, Gamboa

text: soil

text: ant metagenome

text: Soil>1m of Mycocepurus smithii nest KK100411-02

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Casa Verde

text: soil

text: ant metagenome

text: Bacterial communities of the attine ant Mycocepurus smithii, its fungus gardens, nest wall soil, and adjunct soil

text: Soil>1m of Mycocepurus smithii nest TAL100409-05

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Gatun

text: soil

text: ant metagenome

text: Soil>1m of Mycocepurus smithii nest TAL100406-03

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Greenhouse, Gamboa

text: worker

text: ant metagenome

text: Mycocepurus smithii worker>source colony:UGM100403-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Achiote

text: worker

text: ant metagenome

text: Mycocepurus smithii worker>source colony:TAL100404-02

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: worker

text: ant metagenome

text: Mycocepurus smithii worker>source colony:RS100412-07

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: worker

text: ant metagenome

text: Mycocepurus smithii worker>source colony:UGM100402-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: worker

text: ant metagenome

text: Mycocepurus smithii worker>source colony:UGM100402-02

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Achiote

text: worker

text: ant metagenome

text: Mycocepurus smithii worker>source colony:RS100404-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Achiote

text: worker

text: ant metagenome

text: Mycocepurus smithii worker>source colony:TAL100404-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Greenhouse, Gamboa

text: worker

text: ant metagenome

text: Mycocepurus smithii worker>source colony:RS100403-01

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Resort, Gamboa

text: worker

text: ant metagenome

text: Mycocepurus smithii worker>source colony:KK100402-01

text: Generic sample from ant metaganome


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Wolfiporia cocos MD-104 SS10 PD_media

characteristic: description

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Wolfiporia cocos MD-104 SS10

text: MD-104 SS10

characteristic: strain

text: Sample from Wolfiporia cocos MD-104 SS10


characteristic: External Id

text: University of Texas at Austin

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

characteristic: organism

text: Bacterial communities of multiple ant species and their gardens

text: Trachymyrmex zeteki RS1506 field garden from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

text: Trachymyrmex zeteki RS1507 field garden from Panama

text: Generic sample from ant metaganome

characteristic: title


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

characteristic: geo loc name

text: Trachymyrmex zeteki

characteristic: isolation-source

text: ant metagenome

characteristic: project name

text: Trachymyrmex zeteki RS1506 field worker (n=3) from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

text: Trachymyrmex zeteki RS1507 field worker (n=3) from Panama

characteristic: sample description

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

characteristic: SRA accession

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

text: Trachymyrmex zeteki RS1506 lab garden from Panama but lab maintained for 8 months UT Austin

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

text: Trachymyrmex zeteki RS1506 lab worker (n=3) from Panama but lab maintained for 8 months UT Austin

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

text: Trachymyrmex zeteki RS1507 lab worker (n=3) from Panama but lab maintained for 8 months UT Austin

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex longiscapus

text: ant metagenome

text: Cyphomyrmex longiscapus RS1607 field garden from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex longiscapus

text: ant metagenome

text: Cyphomyrmex longiscapus RS1607 field worker from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex longiscapus

text: ant metagenome

text: Cyphomyrmex longiscapus RS1607 lab garden from Panama but lab maintained for 8 months UT Austin

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex longiscapus

text: ant metagenome

text: Cyphomyrmex longiscapus RS1607 lab worker from Panama but lab maintained for 8 months UT Austin

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex muelleri

text: ant metagenome

text: Cyphomyrmex muelleri RS1605 field garden from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex muelleri

text: ant metagenome

text: Cyphomyrmex muelleri RS1605 field worker (n=3) from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex muelleri

text: ant metagenome

text: Cyphomyrmex muelleri RS1605 lab garden from Panama but lab maintained for 8 months UT Austin

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex muelleri

text: ant metagenome

text: Cyphomyrmex muelleri UGM0901 lab garden from Panama but lab maintained for 8 months UT Austin

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex muelleri

text: ant metagenome

text: Cyphomyrmex muelleri RS1605 lab worker (n=3) from Panama but lab maintained for 8 months UT Austin

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex muelleri

text: ant metagenome

text: Bacterial communities of multiple ant species and their gardens

text: Cyphomyrmex muelleri UGM0901 lab worker (n=3) from Panama but lab maintained for 8 months UT Austin

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex longiscapus

text: ant metagenome

text: Cyphomyrmex longiscapus RS1602 field garden from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Cyphomyrmex longiscapus

text: ant metagenome

text: Cyphomyrmex longiscapus RS1602 field worker (n=3) from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: USA: Spring Seat, Texas

text: Trachymyrmex turrifex

text: ant metagenome

text: Trachymyrmex turrifex field garden UGM100427-06 from Spring Seat Texas

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: USA: Brakenridge Field Laboratory, Texas

text: Trachymyrmex turrifex

text: ant metagenome

text: Trachymyrmex turrifex field garden UGM100501-01 from Brakenridge Field Laboratory Texas

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: USA: Spring Seat, Texas

text: Trachymyrmex turrifex

text: ant metagenome

text: Trachymyrmex turrifex field worker (n=5) UGM100427-06 from Spring Seat Texas

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Trachymyrmex turrifex

text: ant metagenome

text: Trachymyrmex turrifex field worker (n=5) UGM100507-04 from Brakenridge Field Laboratory Texas

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

text: Trachymyrmex zeteki NL1604 field garden from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

text: Trachymyrmex zeteki RS1601 field garden from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

text: Trachymyrmex zeteki RS1603 field garden from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

text: Trachymyrmex zeteki NL1604 field worker (n=3) from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

text: Trachymyrmex zeteki RS1601 field worker (n=3) from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Panama: Pipeline Road, Gamboa

text: Trachymyrmex zeteki

text: ant metagenome

text: Trachymyrmex zeteki RS1603 field worker (n=3) from Panama

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: USA: Caldwell Ecolab Texas

text: Cyphomyrmex wheeleri

text: ant metagenome

text: Cyphomyrmex wheeleri garden 3 from Caldwell Ecolab Texas

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: USA: Caldwell Ecolab Texas

text: Cyphomyrmex wheeleri

text: ant metagenome

text: Cyphomyrmex wheeleri worker 3 (n=7) from Caldwell Ecolab Texas

text: Generic sample from ant metaganome


ICG

text: University of Texas at Austin

text: live

text: Generic

text: USA: Caldwell Ecolab Texas

text: Cyphomyrmex wheeleri

text: ant metagenome

text: Bacterial communities of multiple ant species and their gardens

text: Cyphomyrmex wheeleri garden I from Caldwell Ecolab Texas

text: Generic sample from ant metaganome


ICW

text: University of Texas at Austin

text: live

text: Generic

text: USA: Caldwell Ecolab Texas

text: Cyphomyrmex wheeleri

text: ant metagenome

text: Cyphomyrmex wheeleri worker I (n=5) from Caldwell Ecolab Texas

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Cyphomyrmex rimosus

text: ant metagenome

text: Cyphomyrmex rimosus garden 1 from Brakenridge Field Laboratory Texas

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Cyphomyrmex rimosus

text: ant metagenome

text: Cyphomyrmex rimosus garden 2 from Brakenridge Field Laboratory Texas

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: USA: Brakenridge Field Laboratory, Texas

text: Cyphomyrmex rimosus

text: ant metagenome

text: Cyphomyrmex rimosus worker 1 (n=10) from Brakenridge Field Laboratory Texas

text: Generic sample from ant metaganome


text: University of Texas at Austin

text: live

text: Generic

text: Cyphomyrmex rimosus

text: ant metagenome

text: Cyphomyrmex rimosus worker 2 (n=5) from Brakenridge Field Laboratory Texas

text: Generic sample from ant metaganome


text: Brigham Young University DNA Sequencing Center -Udall Lab

text: live

text: Generic

text: Background: Yellow lupin (Lupinus luteus L.) is a minor legume crop characterized by its high seed protein content. Although grown in several temperate countries, its orphan condition has limited the generation of genomic tools to aid breeding efforts to improve yield and nutritional quality. In this study, we report the construction of 454-EST libraries, carried out comparative studies between L. luteus and model legume species, developed a comprehensive set of EST-SSR markers, and validated their utility on diversity studies and transferability to related species. Results: Two runs of 454 pyrosequencing yielded 205 Mb and 530 Mb of sequence data for L1 (young leaves, buds and flowers) and L2 (immature seeds) EST- libraries. A combined assembly (L1L2) yielded 71,655 contigs with an average contig length of 632 nucleotides. L1L2 contigs were clustered into 55,309 isotigs. 38,200 isotigs translated into proteins and 8,741 of them were full length. Around 57% of L. luteus sequences had significant similarity with at least one sequence of Medicago, Lotus, Arabidopsis, or Glycine, and 40.17% showed positive matches with all of these species. L. luteus isotigs were also screened for the presence of SSR sequences. A total of 2,572 isotigs contained at least one EST-SSR, with a frequency of one SSR per 17.75kbp. Empirical evaluation of the EST-SSR candidate markers resulted in 222 polymorphic EST-SSRs. Two hundred and fifty four (65.7%) and 113 (30%) SSR primer pairs were able to amplify fragments from L. hispanicus and L. mutabilis DNA, respectively. Fifty polymorphic EST-SSRs were used to genotype a sample of 64 L. luteus accessions. Neighbor-joining distance analysis detected the existence of several clusters among L. luteus accessions, strongly suggesting the existence of population subdivisions. However, no clear clustering patterns followed the accession’s origin. Conclusion: L. luteus deep transcriptome sequencing will facilitate the further development of genomic tools and lupin germplasm. Massive sequencing of cDNA libraries will continue to produce raw materials for gene discovery, identification of polymorphisms (SNPs, EST-SSRs, INDELs, etc.) for marker development, anchoring sequences for genome comparisons and putative gene candidates for QTL detection.

characteristic: description

text: Lupinus luteus

text: Yellow lupin (Lupinus luteus L.) transcriptome sequencing: molecular marker development and comparative studies


text: Prof. Deyou Qiu, State Key Laboratory of Tree Genetics and Breeding, Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China

text: live

text: Generic

text: De novo transcriptome assembly of the Taxus chinensis var. mairei transcriptome. Illumina GA reads were assembled using SOAPdenovo ver 3.2

text: China

text: Huaihua

characteristic: isolate

text: Taxus mairei

text: General Sample for Taxus mairei


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Brain

characteristic: body site

text: DS-CA

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Case-Control

characteristic: study design

text: Medulloblastoma exome sequence analysis

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Tumor DNA sample from Brain of a human male participant in the dbGaP study Medulloblastoma exome sequence analysis


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: Brain

text: DS-CA

text: No

text: Homo sapiens

characteristic: organism

text: female

text: Case-Control

text: Medulloblastoma exome sequence analysis

text: Non-tumor DNA sample from Brain of a human female participant in the dbGaP study Medulloblastoma exome sequence analysis

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Brain

characteristic: body site

text: DS-CA

text: Yes

text: Homo sapiens

text: female

text: Case-Control

text: Medulloblastoma exome sequence analysis

text: Tumor DNA sample from Brain of a human female participant in the dbGaP study Medulloblastoma exome sequence analysis