text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

characteristic: antibody targetdescription

text: ab8580; 07-473

characteristic: antibody vendorid

text: 1)abcam; 2)Millipore

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

text: epidermal keratinocytes

characteristic: cell description

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: keratinocyte

characteristic: cell type

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

text: NHEK


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

text: rabbit polyclonal. Antibody Target: H3K36me3

text: Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts.

text: abcam

text: Lonza

text: primary cell

text: osteoblasts (NHOst)

text: mesoderm

characteristic: cell lineage

text: human

text: U

text: osteoblast

text: std

text: Standard input signal for most experiments.

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: Osteobl

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K27me3

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: mammary epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HMEC


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ab8580; 07-473

text: 1)abcam; 2)Millipore

text: Lonza

text: lung fibroblasts

text: normal

text: endoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: NHLF

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: mammary epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

text: HMEC


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: abcam

text: WiCell Research Institute

text: stem cell

characteristic: biomaterial type

text: embryonic stem cells

text: inner cell mass

characteristic: cell lineage

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

characteristic: line

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: primary cell

text: epidermal keratinocytes

characteristic: cell description

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: keratinocyte

characteristic: cell type

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

text: NHEK

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2

text: H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).

text: Active Motif

text: Lonza

text: skeletal muscle myotubes differentiated from the HSMM cell line

text: mesoderm

characteristic: cell lineage

text: human

text: U

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: HSMMtube

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H4K20me1

characteristic: antibody antibodydescription

text: Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: epidermal keratinocytes

characteristic: cell description

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

text: NHEK

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Millipore

text: Lonza

text: primary cell

characteristic: biomaterial type

text: astrocytes (also called Astrocy)

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

text: astrocyte

characteristic: cell type

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: donor id

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: NH-A


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Refer to the protocol documents for differing sources

characteristic: biomaterial provider

text: primary cell

text: skeletal muscle myoblasts

characteristic: cell description

text: mesoderm

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: skeletal muscle myoblast

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

text: HSMM

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Lonza

text: primary cell

characteristic: biomaterial type

text: lung fibroblasts

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

text: fibroblast of lung

characteristic: cell type

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: donor id

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: NHLF


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

text: hepatocellular carcinoma

characteristic: cell description

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: line

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K36me3

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

text: adult dermal fibroblasts

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: softwareversion

text: NHDF-Ad


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K4me2

text: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.

text: abcam

text: ATCC

characteristic: biomaterial provider

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K9ac

characteristic: antibody antibodydescription

text: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

text: umbilical vein endothelial cells

characteristic: cell description

text: human

text: std

text: Standard input signal for most experiments.

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

text: Homo sapiens

text: HUVEC

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Active Motif

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

characteristic: softwareversion


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

characteristic: antibody targetdescription

text: ab8580; 07-473

characteristic: antibody vendorid

text: 1)abcam; 2)Millipore

characteristic: antibody vendorname

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: hepatocellular carcinoma

characteristic: cell description

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

characteristic: line

text: Homo sapiens

characteristic: replicate

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ab8580; 07-473

text: 1)abcam; 2)Millipore

text: Lonza

characteristic: biomaterial provider

text: in vitro differentiated cells

text: skeletal muscle myotubes differentiated from the HSMM cell line

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: myotube

characteristic: cell type

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

text: HSMMtube


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K27ac

characteristic: antibody antibodydescription

text: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

text: osteoblasts (NHOst)

characteristic: cell description

text: mesoderm

text: human

text: U

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

text: Osteobl

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

characteristic: antibody

characteristic: antibody description

text: Lonza

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

text: epidermal keratinocytes

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: keratinocyte

characteristic: cell type

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: NHEK


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2

characteristic: antibody antibodydescription

text: H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Active Motif

characteristic: antibody vendorname

text: skeletal muscle myoblasts

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

text: U

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: HSMM

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

characteristic: line

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

text: immortalized cell line

text: hepatocellular carcinoma

characteristic: cell description

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Rabbit polyclonal. Antibody Target: CTCF

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

text: Millipore

text: Lonza

characteristic: biomaterial provider

text: adult dermal fibroblasts

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: NHDF-Ad


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K27me3

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Lonza

text: adult dermal fibroblasts

characteristic: cell description

text: normal

text: mesoderm

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: NHDF-Ad

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ

text: H2A.Z is a sequence variant of Histone H2A.

text: Millipore

text: Lonza

characteristic: biomaterial provider

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

text: HSMMtube

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: ab8580; 07-473

characteristic: antibody vendorid

text: 1)abcam; 2)Millipore

characteristic: antibody vendorname

text: Lonza

text: astrocytes (also called Astrocy)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

text: human

text: std

text: Standard input signal for most experiments.

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: NH-A

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Millipore

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: softwareversion

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Lonza

text: osteoblasts (NHOst)

characteristic: cell description

text: mesoderm

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

text: Osteobl

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: mouse monoclonal, clone CTD4H8. Antibody Target: POL2B

text: RNA polymerase II. Is responsible for RNA transcription. It is generally enriched at 5' gene ends, probably due to higher rate of occupancy associated with transition from initiation to elongation.

text: Covance

text: Lonza

characteristic: biomaterial provider

text: umbilical vein endothelial cells

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HUVEC


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: Lonza

text: adult dermal fibroblasts

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

text: NHDF-Ad

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: rabbit polyclonal. Antibody Target: H3K36me3

characteristic: antibody antibodydescription

text: Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: astrocytes (also called Astrocy)

text: normal

text: ectoderm

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: softwareversion

text: NH-A

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Millipore

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: rabbit polyclonal. Antibody Target: H3K4me2

characteristic: antibody antibodydescription

text: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: adult dermal fibroblasts

text: normal

text: mesoderm

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: softwareversion

text: NHDF-Ad


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Millipore

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: hepatocellular carcinoma

characteristic: cell description

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

characteristic: line

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: rabbit polyclonal. Antibody Target: H3K27ac

characteristic: antibody antibodydescription

text: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Refer to the protocol documents for differing sources

characteristic: biomaterial provider

text: skeletal muscle myoblasts

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: softwareversion

text: HSMM

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K9ac

text: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

text: abcam

text: ATCC

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: treatment description


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: umbilical vein endothelial cells

characteristic: cell description

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

text: HUVEC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K27me3

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

text: Millipore

text: immortalized cell line

characteristic: biomaterial type

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

characteristic: line

text: Homo sapiens

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: human

characteristic: cell organism

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ

text: H2A.Z is a sequence variant of Histone H2A.

text: Millipore

text: skeletal muscle myoblasts

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: softwareversion

text: HSMM

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: rabbit polyclonal. Antibody Target: H3K4me1

characteristic: antibody antibodydescription

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

characteristic: biomaterial provider

text: skeletal muscle myoblasts

text: mesoderm

text: human

characteristic: cell organism

text: U

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

text: HSMM


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal. Antibody Target: CTCF

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

text: Millipore

text: skeletal muscle myoblasts

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: HSMM

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

text: astrocytes (also called Astrocy)

text: normal

characteristic: cell karyotype

text: ectoderm

text: human

characteristic: cell organism

text: astrocyte

characteristic: cell type

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: softwareversion

text: NH-A

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Millipore

text: Lonza

text: primary cell

text: lung fibroblasts

characteristic: cell description

text: normal

text: endoderm

characteristic: cell lineage

text: human

text: fibroblast of lung

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: NHLF

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: astrocytes (also called Astrocy)

text: normal

characteristic: cell karyotype

text: ectoderm

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: softwareversion

text: NH-A

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Millipore

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K4me2

characteristic: antibody antibodydescription

text: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

characteristic: biomaterial provider

text: skeletal muscle myoblasts

text: mesoderm

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

text: HSMM

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: abcam

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: inner cell mass

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K9ac

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Refer to the protocol documents for differing sources

text: skeletal muscle myoblasts

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

text: HSMM

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K27ac

text: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

text: abcam

characteristic: biomaterial provider

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

characteristic: cell description

text: normal

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: Standard input signal for most experiments.

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

text: abcam

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: inner cell mass

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ

characteristic: antibody antibodydescription

text: H2A.Z is a sequence variant of Histone H2A.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

text: hepatocellular carcinoma

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3

text: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

text: abcam

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K9me1

characteristic: antibody antibodydescription

text: Histone H3 (mono-methyl K9). Is associated with active and accessible regions. NOTE CONTRAST to H3K9me3 which is associated with repressive heterochromatic state.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

text: ATCC

text: mesoderm

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

text: Homo sapiens

characteristic: softwareversion

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K4me2

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

text: Lonza

text: osteoblasts (NHOst)

text: mesoderm

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Osteobl


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

characteristic: line

text: Homo sapiens

characteristic: replicate

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

text: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

text: lung fibroblasts

text: normal

characteristic: cell karyotype

text: endoderm

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

text: NHLF

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me1

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

text: abcam

text: WiCell Research Institute

characteristic: biomaterial provider

text: stem cell

characteristic: biomaterial type

text: embryonic stem cells

characteristic: cell description

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

characteristic: line

text: Homo sapiens

characteristic: replicate

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Lonza

text: skeletal muscle myotubes differentiated from the HSMM cell line

text: mesoderm

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

text: HSMMtube

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Millipore

text: Lonza

characteristic: biomaterial provider

text: osteoblasts (NHOst)

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

text: Osteobl

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Millipore

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: softwareversion

characteristic: title


name: Mycobacterium colombiense CECT 3035 type strain

text: Universidad Nacional de Colombia

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: description

text: Mycobacterium colombiense CECT 3035

text: CECT 3035

characteristic: strain


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: ScienCell

characteristic: biomaterial provider

text: HVMF

characteristic: cell

text: Human Villous Mesenchymal Fibroblast Cells

characteristic: cell description

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HVMF


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

text: Jurkat

text: T lymphoblastoid derived from an acute T cell leukemia, The Jurkat cell line was established from the peripheral blood of a 14 year old boy by Schneider et al., and was originally designated JM. - ATCC. (PMID: 68013)

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: Human

characteristic: cell organism

text: M

text: Homo sapiens

text: Jurkat

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: colorectal carcinoma (PMID: 7214343)

text: cancer

text: endoderm

text: Human

text: M

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: ScienCell

text: HCFaa

text: Human Cardiac Fibroblasts-Adult Atrial

text: Human

text: F

text: Homo sapiens

text: HCFaa


text: ENCODE DCC

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: retinoblastoma (PMID: 844036)

characteristic: cell description

text: Human

text: F

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: lymphoblastoid

text: relatively normal

text: International HapMap Project - CEPH/Utah - European Caucasion; Epstein-Barr Virus

text: Human

text: F

characteristic: cell sex

text: Homo sapiens

characteristic: organism

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: Lonza

text: SKMC

text: Human Skeletal Muscle Cells

text: mesoderm

characteristic: cell lineage

text: Human

text: U

text: Homo sapiens

text: SKMC


text: ENCODE DCC

text: live

text: Generic

text: Lonza

text: NHDF-neo

text: Neonatal Human Dermal Fibroblasts

text: mesoderm

text: Human

characteristic: cell organism

text: U

text: Homo sapiens

text: NHDF-neo

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: ScienCell

text: HRGEC

text: Human Renal Glomerular Endothelial Cells

text: Normal

characteristic: cell karyotype

text: Endothelial

text: human

text: U

text: Homo sapiens

text: HRGEC


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: colorectal adenocarcinoma. (PMID: 1939345)

text: cancer

text: Human

text: M

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Primary human Th2 T cells

text: mesoderm

text: Human

text: U

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

text: ScienCell

characteristic: biomaterial provider

text: HPF

characteristic: cell

text: Human Pulmonary Fibroblasts isolated from lung tissue

characteristic: cell description

text: Human

text: U

text: Homo sapiens

text: HPF


text: ENCODE DCC

text: live

text: Generic

text: ScienCell

text: HCM

text: Human Cardiac Myocytes

text: mesoderm

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HCM


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: Lonza

text: AoAF

text: Normal Human Aortic Adventitial Fibroblast Cells

text: Human

characteristic: cell organism

text: F

text: Homo sapiens

text: AoAF


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

text: ATCC

text: epithelial cell line This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old Caucasian male. - ATCC, derived from a lung carcinoma tissue. (PMID: 175022)

text: cancer

text: endoderm

characteristic: cell lineage

text: Human

text: M

text: Homo sapiens

characteristic: title


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Lonza

text: HMVEC-LLy

text: Normal Human Lymphatic Microvascular Endothelial Cells, Lung-Derived

text: Human

text: F

text: Homo sapiens

text: HMVEC-LLy


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: Human neuroblastoma

text: ectoderm

text: Human

text: M

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: ScienCell

text: HBMEC

text: Human Brain Microvascular Endothelial Cells

text: Human

text: U

text: Homo sapiens

text: HBMEC


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

characteristic: cell karyotype

text: ectoderm

text: Human

text: F

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

text: Lonza

text: HMVEC-LBl

characteristic: cell

text: Normal Human Blood Microvascular Endothelial Cells, Lung-Derived

characteristic: cell description

text: Human

text: F

characteristic: cell sex

text: Homo sapiens

text: HMVEC-LBl


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12865

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, Treatment: Epstein-Barr Virus transformed

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: organism

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

text: S. Heimfeld Laboratory, FHCRC

text: Monocytes-CD14+ are CD14-positive cells from human leukapheresis product

text: Normal

text: Monocytic

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

text: Homo sapiens


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=AG04450

text: Fetal lung fibroblast

text: mesoderm

text: Human

text: M

text: Homo sapiens

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ScienCell

text: HConF

text: Human Conjunctival Fibroblast

text: Human

text: U

text: Homo sapiens

text: HConF


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

text: pancreatic carcinoma. (PMID: 1140870)

text: cancer

text: Human

text: M

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

text: ATCC

text: BJ

characteristic: cell

text: Skin fibroblast The line was established from skin taken from normal foreskin. - ATCC. (PMID: 9916803)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

text: Human

text: M

text: Homo sapiens

text: BJ


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: pancreatic carcinoma. (PMID: 1140870)

text: cancer

text: Human

text: M

characteristic: cell sex

characteristic: line

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Lonza

text: NHDF-Ad

text: Adult Normal Human Dermal Fibroblasts

text: Human

characteristic: cell organism

text: F

text: Homo sapiens

characteristic: replicate

text: NHDF-Ad


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Lonza

text: HMVEC-dBl-Neo

text: Normal Neonatal Human Blood Microvascular Endothelial Cells, Dermal-Derived

text: Human

text: M

text: Homo sapiens

text: HMVEC-dBl-Neo

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

text: SK-N-MC

text: neuroepithelioma cell line derived from a metastatic supra-orbital human brain tumor, SK-N-MC was isolated in September of l971 and was found to have moderate dopamine - beta - hydroxylase activity as well as formaldehyde induced fluorescence indicative of intracellular catecholamines. - ATCC. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

text: cancer

text: ectoderm

characteristic: cell lineage

text: Human

text: F

text: Homo sapiens

text: SK-N-MC


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: Lonza

text: HMVEC-dBl-Ad

characteristic: cell

text: Normal Adult Human Blood Microvascular Endothelial Cells, Dermal-Derived

characteristic: cell description

text: Human

text: F

text: Homo sapiens

text: HMVEC-dBl-Ad


text: ENCODE DCC

text: live

text: Generic

text: Dr. Torok-Storb, FHCRC

text: HFF-Myc

text: Human Foreskin Fibroblast Cells Expressing Canine cMyc

text: Normal (cMyc)

characteristic: cell karyotype

text: Fibroblast

text: human

text: M

characteristic: cell sex

text: Homo sapiens

characteristic: organism

text: HFF-Myc


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12864

text: mesoderm

text: Human

characteristic: cell organism

text: M

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

text: Dr. Carl Mann, SBIGeM

text: Embryonic Lung Fibroblast Cells, hTERT immortalized, includes Raf1 construct

text: Normal (RAF)

text: Fibroblast

text: human

text: F

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: Lonza

text: HRE

text: Human Renal Epithelial cells (normal)

text: normal

text: mesoderm

text: Human

text: U

text: Homo sapiens

text: HRE

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

text: HPdLF

text: Normal Human Periodontal Ligament Fibroblasts

text: Human

text: M

text: Homo sapiens

text: HPdLF


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/

characteristic: cell

text: acute promyelocytic leukemia cell line. (PMID: 1995093)

text: cancer

text: Human

text: U

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

text: Lonza

text: HSMMtube

text: Normal Human Skeletal Muscle Myotubes

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: Human

text: U

text: Homo sapiens

text: HSMMtube


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

text: Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=AG09319

text: Adult human gum tissue fibroblasts

text: mesoderm

text: Human

text: F

characteristic: cell sex

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

text: ScienCell

text: HEEpiC

text: Human Esophageal Epithelial Cells

text: endoderm

text: Human

characteristic: cell organism

text: U

text: Homo sapiens

text: HEEpiC


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: Lonza

text: HUVEC

text: Human Umbilical Vein Endothelial Cell

text: normal

text: mesoderm

text: Human

text: U

text: Homo sapiens

characteristic: replicate

text: HUVEC


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: ScienCell

text: HVMF

text: Human Villous Mesenchymal Fibroblast Cells

text: Human

text: U

text: Homo sapiens

text: HVMF

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: ScienCell

characteristic: biomaterial provider

text: HA-h

text: Human Astrocytes-hippocampal

text: Normal

text: Astrocytic

text: human

text: U

text: Homo sapiens

text: HA-h


text: ENCODE DCC

text: live

text: Generic

text: Lonza

text: NHLF

characteristic: cell

text: Normal Human Lung Fibroblasts

characteristic: cell description

text: Human

text: U

text: Homo sapiens

text: NHLF


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

text: ScienCell

text: HA-sp

text: Human astrocytes spinal cord

text: Normal

characteristic: cell karyotype

text: Astrocytic

characteristic: cell lineage

text: human

text: U

text: Homo sapiens

text: HA-sp


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: ScienCell

text: HAc

text: Human Astrocytes-cerebellar

text: Normal

text: Astrocytic

text: human

text: U

characteristic: cell sex

text: Homo sapiens

characteristic: organism

text: HAc


text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

text: Lonza

text: RPTEC

text: Renal Proximal Tubule Epithelial Cells

text: Human

characteristic: cell organism

text: U

text: Homo sapiens

text: RPTEC


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

text: ScienCell

text: HCF

text: Human Cardiac Fibroblasts

text: mesoderm

text: Human

text: U

text: Homo sapiens

characteristic: replicate

text: HCF


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: ScienCell

text: HMF

text: human mammary fibroblasts

text: Human

text: F

text: Homo sapiens

text: HMF

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

text: HMVEC-LBl

characteristic: cell

text: Normal Human Blood Microvascular Endothelial Cells, Lung-Derived

text: Human

text: F

text: Homo sapiens

text: HMVEC-LBl


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

text: Lonza

text: NH-A

text: normal human astrocytes

characteristic: cell description

text: Human

text: U

text: Homo sapiens

text: NH-A


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Lonza

text: NHEK

text: Normal Human Epidermal Keratinocytes

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: Human

text: F

text: Homo sapiens

text: NHEK


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Lonza

text: NHDF-neo

text: Neonatal Human Dermal Fibroblasts

text: mesoderm

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

characteristic: organism

text: NHDF-neo


text: ENCODE DCC

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: ScienCell

text: HConF

text: Human Conjunctival Fibroblast

text: Human

characteristic: cell organism

text: U

text: Homo sapiens

text: HConF


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: Lonza

text: HRE

text: Human Renal Epithelial cells (normal)

text: normal

text: mesoderm

text: Human

text: U

text: Homo sapiens

characteristic: replicate

text: HRE


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

text: HRCEpiC

text: Human Renal Cortical Epithelial cells (normal)

text: normal

text: mesoderm

text: Human

text: U

text: Homo sapiens

text: HRCEpiC

characteristic: title


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

text: ScienCell

characteristic: biomaterial provider

text: HNPCEpiC

characteristic: cell

text: Human Non-Pigment Ciliary Epithelial Cells

text: Human

text: U

text: Homo sapiens

text: HNPCEpiC


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=AG09309

text: Adult human toe fibroblast

characteristic: cell description

text: mesoderm

text: Human

text: F

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Lonza

text: HMEC

text: Human Mammary Epithelial Cells

text: Human

text: U

text: Homo sapiens

text: HMEC


text: ENCODE DCC

text: live

text: Generic

text: Lonza

text: HSMM

text: Normal Human Skeletal Muscle Myoblasts

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

text: HSMM


text: ENCODE DCC

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: ScienCell

text: HBMEC

text: Human Brain Microvascular Endothelial Cells

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: HBMEC


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: ScienCell

text: HPAF

text: Human Pulmonary Artery Fibroblasts

text: Human

characteristic: cell organism

text: U

text: Homo sapiens

text: HPAF


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM06990

text: Lymphoblastoid, International HapMap Project, CEPH/Utah, Treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: Human

text: F

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

text: neuroblastoma cell line, treatment: differentiated with retinoic acid. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

text: cancer

text: ectoderm

text: Human

text: F

text: Homo sapiens

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12865

characteristic: cell

text: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, Treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: mesoderm

text: Human

text: F

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=AG04449

text: Fetal buttock/thigh fibroblast

text: mesoderm

characteristic: cell lineage

text: Human

text: M

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=AG04450

text: Fetal lung fibroblast

text: mesoderm

text: Human

text: M

characteristic: cell sex

text: Homo sapiens


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: cervical carcinoma

text: cancer

characteristic: cell karyotype

text: ectoderm

text: Human

text: F

characteristic: line

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

text: LNCaP

text: prostate adenocarcinoma, LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old Caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma. - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.)

text: cancer

text: endoderm

text: Human

characteristic: cell organism

text: M

text: Homo sapiens

text: LNCaP


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

text: leukemia

text: cancer

text: The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: Human

text: F

text: Homo sapiens

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Lonza

text: NHDF-Ad

characteristic: cell

text: Adult Normal Human Dermal Fibroblasts

characteristic: cell description

text: Human

text: F

text: Homo sapiens

text: NHDF-Ad


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

text: ScienCell

text: HCF

text: Human Cardiac Fibroblasts

text: mesoderm

characteristic: cell lineage

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

text: HCF


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: ScienCell

text: HCPEpiC

text: Human Choroid Plexus Epithelial Cells

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: HCPEpiC


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ScienCell

text: HGF

text: Human Gingival Fibroblasts

text: normal

characteristic: cell karyotype

text: Human

text: U

text: Homo sapiens

text: HGF


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

text: ATCC

text: SK-N-MC

text: neuroepithelioma cell line derived from a metastatic supra-orbital human brain tumor, SK-N-MC was isolated in September of l971 and was found to have moderate dopamine - beta - hydroxylase activity as well as formaldehyde induced fluorescence indicative of intracellular catecholamines. - ATCC. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

text: cancer

text: ectoderm

text: Human

characteristic: cell organism

text: F

text: Homo sapiens

text: SK-N-MC


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

text: Lonza

characteristic: biomaterial provider

text: HMVEC-dBl-Neo

text: Normal Neonatal Human Blood Microvascular Endothelial Cells, Dermal-Derived

text: Human

text: M

text: Homo sapiens

characteristic: replicate

text: HMVEC-dBl-Neo


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Dr. Torok-Storb, FHCRC

text: HFF

text: Human Foreskin Fibroblast

text: Normal

text: Fibroblast

text: human

text: M

text: Homo sapiens

text: HFF

characteristic: title


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

text: Lonza

text: HMVEC-dLy-Neo

characteristic: cell

text: Normal Neonatal Human Lymphatic Microvascular Endothelial Cells, Dermal-Derived

characteristic: cell description

text: Human

text: M

text: Homo sapiens

text: HMVEC-dLy-Neo


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: ScienCell

text: HPF

text: Human Pulmonary Fibroblasts isolated from lung tissue

text: Human

text: U

characteristic: cell sex

text: Homo sapiens

text: HPF


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

text: Lonza

text: HUVEC

text: Human Umbilical Vein Endothelial Cell

text: normal

text: mesoderm

characteristic: cell lineage

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: HUVEC


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

text: ATCC

text: cancer

characteristic: cell karyotype

text: ectoderm

text: Human

text: F

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: ATCC

text: epithelial cell line This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old Caucasian male. - ATCC, derived from a lung carcinoma tissue. (PMID: 175022)

text: cancer

text: endoderm

text: Human

characteristic: cell organism

text: M

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

text: mammary gland, adenocarcinoma. (PMID: 4357757)

text: cancer

text: Human

text: F

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: Cellular Dynamics

text: stem cell

characteristic: biomaterial type

text: Human Embryonic Stem Cells

text: normal

text: embryonic stem cells

text: Human

text: M

characteristic: line

text: Homo sapiens

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: Lonza

text: AoAF

characteristic: cell

text: Normal Human Aortic Adventitial Fibroblast Cells

characteristic: cell description

text: Human

text: F

characteristic: cell sex

text: Homo sapiens

text: AoAF


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

text: Lonza

text: primary cell

text: NH-A

text: normal human astrocytes

text: Human

text: U

text: astrocyte

characteristic: cell type

characteristic: donor id

text: Homo sapiens

characteristic: organism

text: NH-A


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: ScienCell

characteristic: biomaterial provider

text: HEEpiC

text: Human Esophageal Epithelial Cells

text: endoderm

characteristic: cell lineage

text: Human

characteristic: cell organism

text: U

text: Homo sapiens

text: HEEpiC


text: ENCODE DCC

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: ScienCell

text: HAc

text: Human Astrocytes-cerebellar

text: Normal

characteristic: cell karyotype

text: Astrocytic

text: human

text: U

text: Homo sapiens

characteristic: replicate

text: HAc

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: ATCC

characteristic: cell

text: colorectal adenocarcinoma. (PMID: 1939345)

characteristic: cell description

text: cancer

text: Human

text: M

characteristic: cell sex

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: cancer

text: Human

text: F

characteristic: line

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: ScienCell

characteristic: biomaterial provider

text: HIPEpiC

text: Human Iris Pigment Epithelial Cells

text: ectoderm

characteristic: cell lineage

text: Human

text: U

text: Homo sapiens

text: HIPEpiC


text: ENCODE DCC

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: Fetal buttock/thigh fibroblast

text: mesoderm

text: Human

characteristic: cell organism

text: M

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: Lonza

text: HMVEC-dLy-Ad

characteristic: cell

text: Normal Adult Human Blood Microvascular Endothelial Cells, Dermal-Derived

text: Human

text: F

text: Homo sapiens

text: HMVEC-dLy-Ad

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

text: primary human Th1 T cells

characteristic: cell description

text: mesoderm

text: Human

text: U

characteristic: cell sex

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Lonza

text: SKMC

text: Human Skeletal Muscle Cells

text: mesoderm

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: SKMC


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: ScienCell

text: HA-h

text: Human Astrocytes-hippocampal

text: Normal

characteristic: cell karyotype

text: Astrocytic

text: human

text: U

text: Homo sapiens

text: HA-h


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: ATCC

characteristic: biomaterial provider

text: Human promyelocytic leukemia cells. (PMID: 276884)

text: cancer

text: Human

text: F

text: Homo sapiens


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

text: ATCC

text: BJ

text: Skin fibroblast The line was established from skin taken from normal foreskin. - ATCC. (PMID: 9916803)

text: normal

text: mesoderm

characteristic: cell lineage

text: Human

characteristic: cell organism

text: M

text: Homo sapiens

text: BJ


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: ScienCell

text: HCPEpiC

text: Human Choroid Plexus Epithelial Cells

text: Human

text: U

text: Homo sapiens

characteristic: replicate

text: HCPEpiC


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=AG10803

characteristic: cell

text: Adult human abdominal skin fibroblasts

text: mesoderm

text: Human

text: M

text: Homo sapiens

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: colorectal carcinoma (PMID: 7214343)

characteristic: cell description

text: cancer

text: endoderm

text: Human

text: M

characteristic: cell sex

characteristic: line

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: ScienCell

text: HCFaa

text: Human Cardiac Fibroblasts-Adult Atrial

text: Human

text: F

text: Homo sapiens

characteristic: organism

text: HCFaa


text: ENCODE DCC

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: Dr. Torok-Storb, FHCRC

characteristic: biomaterial provider

text: HFF

text: Human Foreskin Fibroblast

text: Normal

characteristic: cell karyotype

text: Fibroblast

characteristic: cell lineage

text: human

text: M

text: Homo sapiens

text: HFF


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

text: ATCC

text: LNCaP

text: cancer

text: endoderm

text: Human

characteristic: cell organism

text: M

text: Homo sapiens

characteristic: replicate

text: LNCaP


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission package

text: Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/

characteristic: cell

text: acute promyelocytic leukemia cell line. (PMID: 1995093)

characteristic: cell description

text: cancer

text: Human

text: U

text: Homo sapiens

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: Dr. Torok-Storb, FHCRC

text: HFF-Myc

text: Human Foreskin Fibroblast Cells Expressing Canine cMyc

text: Normal (cMyc)

text: Fibroblast

text: human

text: M

characteristic: cell sex

text: Homo sapiens

text: HFF-Myc


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: ScienCell

text: HAEpiC

text: Human Amniotic Epithelial Cells

text: Human

text: U

text: Homo sapiens

characteristic: organism

text: HAEpiC


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

text: DSMZ

characteristic: biomaterial provider

text: CMK

text: human acute megakaryocytic leukemia cells, established from the peripheral blood of a 10-month-old boy with Down's syndrome and acute megakaryocytic leukemia (AML M7) at relapse in 1985 - DSMZ. (PMID: 3016165)

text: Human

text: M

text: Homo sapiens

text: CMK


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Lonza

text: SAEC

text: Small Airway Epithelial Cells

text: normal

characteristic: cell karyotype

text: Human

text: U

text: Homo sapiens

text: SAEC