2007-06-07 08:16

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2007-06-07 08:16; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: June 2007 MABMO


2007-07-11 09:23

status: PUBLIC

characteristic: External Id

text: Pacific Northwest National Labs

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 2007-07-11 09:23; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

characteristic: description

text: marine metagenome

characteristic: organism

text: July 2007 MABMO

characteristic: title


2007-08-07 08:04

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2007-08-07 08:04; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Aug 2007 MABMO


2007-09-05 07:00

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2007-09-05 07:00; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Sept 2007 MABMO


2007-10-16 08:49

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2007-10-16 08:49; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Oct 2007 MABMO


2007-11-08 07:20

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2007-11-08 07:20; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Nov 2007 MABMO


2007-12-10 08:15

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2007-12-10 08:15; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Dec 2007 MABMO


2008-03-11 10:24

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2008-03-11 10:24; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: March 2008 MABMO


2008-04-11 09:25

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2008-04-11 09:25; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Apr 2008 MABMO


2008-05-03 07:39

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2008-05-03 07:39; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: May 2008 MABMO


2008-06-03 07:56

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2008-06-03 07:56; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: June 2008 MABMO


2008-07-10 06:00

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2008-07-10 06:00; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: July 2008 MABMO


2008-08-18 08:24

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2008-08-18 08:24; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Aug 2008 MABMO


2008-09-08 09:00

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2008-09-08 09:00; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Sept 2008 MABMO


2008-10-27 08:27

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2008-10-27 08:27; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Oct 2008 MABMO


2008-11-12 08:45

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2008-11-12 08:45; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Nov 2008 MABMO


2008-12-16 11:41

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2008-12-16 11:41; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Dec 2008 MABMO


2009-03-04 01:08

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2009-03-04 01:08; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: March 2009 MABMO


2009-04-17 10:01

text: Pacific Northwest National Labs

text: live

text: Generic

text: 2009-04-17 10:01; 38* 50.935' N, 75* 06.456' W; 1m depth; 0.22-0.8um filtrate

text: marine metagenome

text: Apr 2009 MABMO


plusFe

text: Unversity of Washington

text: live

text: Generic

text: Iron-enriched seawater collected at Ocean Station Papa (OSP; 50 N, 145 W) from a depth of 10m and incubated for 98 hrs. Poly-A selected mRNA. Harvested on June 13, 2008.

text: metagenomes

text: Ocean Station Papa seawater plusFe incubation


ambient

text: Unversity of Washington

text: live

text: Generic

text: Seawater collected at Ocean Station Papa (OSP; 50 N, 145 W) from a depth of 10m. Poly-A selected mRNA. Collected on June 8, 2008.

text: metagenomes

text: Ocean Station Papa ambient seawater


P.granii

text: Unversity of Washington

text: live

text: Generic

text: Pseudo-nitzschia granii isolate obtained at Ocean Station Papa (OSP; 50 N, 145 W) obtained from the iron-enriched seawater. Harvest 24 hrs after iron-resupply to iron-limited cells. . Isolated in June 2008.

text: Pseudo-nitzschia granii

text: Pseudo-nitzschia granii isolate


adult Taenia pisiformis

text: Sichuan Agricultural University

text: live

text: Generic

text: Taenia pisiformis

text: Taenia pisiformis is one of the most common intestinal tapeworms of canines.


text: McGill University

text: live

text: Generic

text: Homo sapiens

text: HCC1937 BRCA1-related breast cancer cell line


text: McGill University

text: live

text: Generic

text: Homo sapiens

text: SUM149 BRCA1-related breast cancer cell line


text: McGill University

text: live

text: Generic

text: Homo sapiens

text: HCC3153 BRCA1-related breast cancer cell line


text: McGill University

text: live

text: Generic

text: Homo sapiens

text: SUM1315 BRCA1-related breast cancer cell line


text: McGill University

text: live

text: Generic

text: Homo sapiens

text: Breast metasplastic carcinoma cell line, no BRCA1 mutation


text: Human Genetics, University of Chicago

text: live

text: Generic

text: 2 months

tag: attribute

characteristic: age

text: Goat anti-GFP (kindly provided by Kevin P White, University of Chicago)

characteristic: chip antibody

text: Mus musculus

text: adult whole heart

characteristic: strain

text: whole heart

characteristic: tissue

text: Tbx20 (fused to GFP) ChIP-seq


text: Human Genetics, University of Chicago

text: live

text: Generic

text: Mus musculus

text: whole heart

text: whole heart

text: whole heart input 1


text: Human Genetics, University of Chicago

text: live

text: Generic

text: Mus musculus

text: whole heart

text: whole heart

text: whole heart input 2


text: Human Genetics, University of Chicago

text: live

text: Generic

text: Mus musculus

text: whole heart

text: whole heart

text: whole heart input 3


text: University College Dublin

text: live

text: Generic

characteristic: cell line

text: kidney proximal tubule epithelial cell line

characteristic: cell type

text: Homo sapiens

text: HK-2 cells

text: HK2 cells untreated; 48hrs rep1


characteristic: External Id

text: University College Dublin

characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

text: HK-2 cells

text: HK2 cells untreated; 48hrs rep2


text: University College Dublin

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: HK-2 cells

text: HK2 cells TGF-beta1; 48hrs rep1


text: University College Dublin

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: HK-2 cells

text: HK2 cells untreated; 48hrs rep3


text: University College Dublin

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Homo sapiens

text: HK-2 cells

text: HK2 cells TGF-beta1; 48hrs rep2


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

characteristic: SRA accession

text: Macaca fascicularis

text: brain

text: crab-eating macaque

characteristic: species

text: brain


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Macaca fascicularis

characteristic: organism

text: ileum

text: crab-eating macaque

text: ileum

characteristic: title


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Macaca fascicularis

text: kidney

text: crab-eating macaque

text: kidney


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Macaca fascicularis

text: liver

text: crab-eating macaque

text: liver


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Macaca fascicularis

text: testes

text: crab-eating macaque

text: testes


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Macaca fascicularis

text: white adipose

text: crab-eating macaque

text: white adipose


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Macaca mulatta

text: brain

text: Indian rhesus macaque

text: brain


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Macaca mulatta

text: heart

text: Indian rhesus macaque

text: heart


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Macaca mulatta

text: kidney

text: Indian rhesus macaque

text: kidney


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Macaca mulatta

text: liver

text: Indian rhesus macaque

text: liver


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Macaca mulatta

text: quadriceps

text: Indian rhesus macaque

text: quadriceps


text: BGI-Shenzhen, Shenzhen 518083, China

text: live

text: Generic

text: Macaca mulatta

text: testes

text: Indian rhesus macaque

text: testes


text: Jason Lieb, Biology, University of North Carolina at Chapel Hill

text: live

text: Generic

text: dextrose

characteristic: carbon source

characteristic: od

text: Saccharomyces cerevisiae

text: 3 hours

characteristic: time point


text: Bose Institute

text: live

text: Generic

text: Complimentary DNA amplified fragment length polymorphism (cDNA AFLP) analysis was carried out to reveal the differential gene expression pattern between aphid tolerant wild crucifer Rorippa indica plants infested with mustard aphid Lipaphis erysimi and uninfested R. indica plants. The differentially expressed cDNA AFLP fragments were gel eluted, re-amplified, cloned and sequenced.

characteristic: description

text: Full-grown plants

characteristic: dev-stage

text: E coli DH5alpha

characteristic: lab-host

text: Rorippa indica

text: Whole plant without root

characteristic: tissue-type

text: RiEST30: cDNA-AFLP fragments/L. erysimi & R. indica interaction

text: Plasmid

text: pGEM-T Easy

characteristic: vector


characteristic: External Id

text: Kobe University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: sample obtained from Maruit Lake, Egypt

text: Halomonas sp. MA2

text: Halomonas sp. MA2 DNA pMA21 (Osman O)


text: Kobe University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: sample obtained from Maruit Lake, Egypt

text: Halomonas sp. MA2

text: Halomonas sp. MA2 DNA pMA22 (Osman O)


Escherichia coli TY-2482

text: Beijing Genome Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: enterohemorrhagic E. coli strain implicated in spring 2011 European outbreak EHEC serovar O104:H4

text: stool sample from patient with hemolytic uremic syndrome (HUS)

characteristic: isolation source

text: Escherichia coli O104:H4 str. TY-2482

characteristic: organism

characteristic: serovar

characteristic: strain

text: Escherichia coli TY-2482


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Vibrio cholerae CP1048(21)

text: CP1048(21) CP1048(21)

characteristic: title


text: live

text: Generic

text: Vibrio cholerae HC-41A1

text: HC-41A1 HC-41A1


text: live

text: Generic

text: Vibrio cholerae HC-50A1

text: HC-50A1 HC-50A1


text: live

text: Generic

text: Vibrio cholerae HC-57A2

text: HC-57A2 HC-57A2


text: live

text: Generic

text: Vibrio cholerae CP1040(13)

text: CP1040 CP1040


text: live

text: Generic

text: Vibrio cholerae CP1041(14)

text: CP1041(14) CP1041(14)


text: live

text: Generic

text: Vibrio cholerae CP1038(11)

text: CP1038(11) CP1038(11)


text: live

text: Generic

text: Vibrio cholerae CP1032(5)

text: CP1032(5) CP1032(5)


text: live

text: Generic

text: Vibrio cholerae HC-57A1

text: HC-57A1 HC-57A1


text: live

text: Generic

text: Vibrio paracholerae HE-16

text: HE-16 HE-16


text: live

text: Generic

text: Vibrio cholerae CP1030(3)

text: CP1030(3) CP1030(3)


text: live

text: Generic

text: Vibrio cholerae CP1037(10)

text: CP1037(10) CP1037(10)


text: live

text: Generic

text: Vibrio cholerae CP1046(19)

text: CP1046(19) CP1046(19)


text: live

text: Generic

text: Vibrio cholerae CP1042(15)

text: CP1042(15) CP1042(15)


text: live

text: Generic

text: Vibrio cholerae HC-39A1

text: HC-39A1 HC-39A1


text: live

text: Generic

text: Vibrio cholerae HC-42A1

text: HC-42A1 HC-42A1


text: live

text: Generic

text: Vibrio cholerae HC-47A1

text: HC-47A1 HC-47A1


text: live

text: Generic

text: Vibrio cholerae HC-56A1

text: HC-56A1 HC-56A1


text: live

text: Generic

text: Vibrio cholerae HC-56A2

text: HC-56A2 HC-56A2


text: live

text: Generic

text: Vibrio cholerae HC-51A1

text: HC-51A1 HC-51A1


text: live

text: Generic

text: Vibrio cholerae HC-52A1

text: HC-52A1 HC-52A1


text: live

text: Generic

text: Vibrio cholerae HC-55A1

text: HC-55A1 HC-55A1


text: live

text: Generic

text: Vibrio cholerae HC-81A2

text: HC-81A2 HC-81A2


text: live

text: Generic

text: Vibrio cholerae CP1047(20)

text: CP1047 CP1047


text: live

text: Generic

text: Vibrio cholerae CP1050(23)

text: CP1050 CP1050


text: live

text: Generic

text: Vibrio cholerae CP1044(17)

text: CP1044(17) CP1044(17)


phop-deleted

text: Yale university

text: live

text: Generic

text: E. coli MG1655 with phoP gene deleted by Kan insertion

characteristic: description

text: Escherichia coli str. K-12 substr. MG1655

text: phop-deleted E.coli MG1655


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: epidermal keratinocytes

characteristic: cell description

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: NHEK

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

characteristic: antibody targetdescription

text: ab8580; 07-473

text: 1)abcam; 2)Millipore

text: Refer to the protocol documents for differing sources

text: primary cell

characteristic: biomaterial type

text: skeletal muscle myoblasts

text: mesoderm

characteristic: cell lineage

text: human

text: U

text: skeletal muscle myoblast

characteristic: cell type

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

text: HSMM

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K9ac

text: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: cell description

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: abcam

text: Lonza

text: skeletal muscle myotubes differentiated from the HSMM cell line

text: mesoderm

characteristic: cell lineage

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

text: HSMMtube

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Lonza

characteristic: biomaterial provider

text: in vitro differentiated cells

characteristic: biomaterial type

characteristic: cell description

text: mesoderm

text: human

characteristic: cell organism

text: U

text: myotube

characteristic: cell type

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: donor id

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: HSMMtube


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H4K20me1

characteristic: antibody antibodydescription

text: Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

text: umbilical vein endothelial cells

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

text: HUVEC

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2

text: H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).

text: Active Motif

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: cell description

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: mouse monoclonal, clone CTD4H8. Antibody Target: POL2B

text: RNA polymerase II. Is responsible for RNA transcription. It is generally enriched at 5' gene ends, probably due to higher rate of occupancy associated with transition from initiation to elongation.

text: Covance

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: mesoderm

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

text: mesoderm

characteristic: cell lineage

text: human

text: U

characteristic: cell sex

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

text: HSMMtube

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: CTCF

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

text: Millipore

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: cell description

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K27ac

characteristic: antibody antibodydescription

text: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

text: primary cell

characteristic: biomaterial type

text: lung fibroblasts

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

text: fibroblast of lung

characteristic: cell type

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

text: NHLF

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: abcam

text: Lonza

characteristic: biomaterial provider

text: mammary epithelial cells

characteristic: cell description

text: normal

text: ectoderm

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion

text: HMEC

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K4me1

characteristic: antibody antibodydescription

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

text: lung fibroblasts

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

text: NHLF

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K4me3

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

text: ab8580; 07-473

text: 1)abcam; 2)Millipore

text: Lonza

characteristic: biomaterial provider

text: adult dermal fibroblasts

characteristic: cell description

text: normal

text: mesoderm

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion

text: NHDF-Ad

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K4me2

characteristic: antibody antibodydescription

text: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K9ac

text: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

text: abcam

text: Lonza

characteristic: biomaterial provider

text: lung fibroblasts

characteristic: cell description

text: normal

characteristic: cell karyotype

text: endoderm

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: NHLF

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: ab8580; 07-473

characteristic: antibody vendorid

text: 1)abcam; 2)Millipore

text: WiCell Research Institute

text: embryonic stem cells

text: inner cell mass

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: softwareversion

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2

text: H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).

text: Active Motif

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: abcam

text: Lonza

text: mammary epithelial cells

text: normal

characteristic: cell karyotype

text: ectoderm

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: HMEC

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K9me1

text: Histone H3 (mono-methyl K9). Is associated with active and accessible regions. NOTE CONTRAST to H3K9me3 which is associated with repressive heterochromatic state.

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: epidermal keratinocytes

characteristic: cell description

text: human

characteristic: cell organism

text: U

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

text: NHEK

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: abcam

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

characteristic: line

text: Homo sapiens

characteristic: replicate

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K27me3

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

text: mesoderm

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: line

text: Homo sapiens

characteristic: replicate


text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K27ac

characteristic: antibody antibodydescription

text: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: mammary epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion

text: HMEC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K4me1

characteristic: antibody antibodydescription

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

text: Lonza

text: skeletal muscle myotubes differentiated from the HSMM cell line

text: mesoderm

text: human

text: U

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

text: HSMMtube

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

characteristic: antibody

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

text: adult dermal fibroblasts

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: fibroblast of dermis

characteristic: cell type

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: donor id

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: NHDF-Ad


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: Refer to the protocol documents for differing sources

characteristic: biomaterial provider

text: skeletal muscle myoblasts

text: mesoderm

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

text: HSMM

text: Bernstein_HSMM_Control (superseded by GSE136426)

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: softwareversion


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K9ac

characteristic: antibody antibodydescription

text: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

text: abcam

text: Lonza

characteristic: biomaterial provider

text: epidermal keratinocytes

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

text: NHEK

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: HSMMtube

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K27me3

characteristic: antibody antibodydescription

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

text: Millipore

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

text: skeletal muscle myoblasts

text: mesoderm

text: human

text: U

characteristic: cell sex

text: skeletal muscle myoblast

characteristic: cell type

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: HSMM


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Lonza

text: primary cell

text: mammary epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

text: mammary epithelial cell

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HMEC

text: Bernstein_HMEC_Control (superseded by GSE136555)

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2

characteristic: antibody antibodydescription

text: H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Active Motif

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion


text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K4me2

text: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.

text: abcam

text: WiCell Research Institute

text: embryonic stem cells

characteristic: cell description

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: mouse monoclonal, clone CTD4H8. Antibody Target: POL2B

characteristic: antibody antibodydescription

text: RNA polymerase II. Is responsible for RNA transcription. It is generally enriched at 5' gene ends, probably due to higher rate of occupancy associated with transition from initiation to elongation.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Lonza

text: epidermal keratinocytes

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

text: NHEK


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: CTCF

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

text: Millipore

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

characteristic: cell description

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K4me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

characteristic: antibody targetdescription

text: ab8580; 07-473

characteristic: antibody vendorid

text: 1)abcam; 2)Millipore

text: Lonza

text: umbilical vein endothelial cells

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

text: HUVEC

characteristic: title

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K27ac

text: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

text: epidermal keratinocytes

characteristic: cell description

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: keratinocyte

characteristic: cell type

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: donor id

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: NHEK


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H4K20me1

characteristic: antibody antibodydescription

text: Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: softwareversion

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: abcam

text: Refer to the protocol documents for differing sources

characteristic: biomaterial provider

text: skeletal muscle myoblasts

characteristic: cell description

text: mesoderm

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: HSMM


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K9ac

characteristic: antibody antibodydescription

text: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: softwareversion


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Lonza

characteristic: biomaterial provider

text: astrocytes (also called Astrocy)

characteristic: cell description

text: normal

text: ectoderm

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: NH-A

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K36me3

characteristic: antibody antibodydescription

text: Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: softwareversion


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K4me3

text: ab8580; 07-473

text: 1)abcam; 2)Millipore

text: ATCC

characteristic: biomaterial provider

characteristic: cell description

text: mesoderm

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3

characteristic: antibody antibodydescription

text: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

text: primary cell

characteristic: biomaterial type

text: osteoblasts (NHOst)

text: mesoderm

characteristic: cell lineage

text: human

text: U

characteristic: cell sex

text: osteoblast

characteristic: cell type

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

text: Osteobl


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

text: ab8580; 07-473

text: 1)abcam; 2)Millipore

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

characteristic: line

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K4me2

characteristic: antibody antibodydescription

text: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

text: umbilical vein endothelial cells

characteristic: cell description

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

text: HUVEC


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K27ac

text: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

text: abcam

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

characteristic: line

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

text: immortalized cell line

text: hepatocellular carcinoma

characteristic: cell description

text: human

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: abcam

text: Lonza

characteristic: biomaterial provider

text: epidermal keratinocytes

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion

text: NHEK


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H4K20me1

characteristic: antibody antibodydescription

text: Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: WiCell Research Institute

text: embryonic stem cells

characteristic: cell description

text: inner cell mass

characteristic: cell lineage

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K27me3

text: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.

text: Millipore

text: Lonza

characteristic: biomaterial provider

text: umbilical vein endothelial cells

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HUVEC

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

characteristic: antibody

text: rabbit polyclonal. Antibody Target: H3K4me1

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

text: abcam

text: Lonza

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

text: umbilical vein endothelial cells

characteristic: cell description

text: human

characteristic: cell organism

text: endothelial cell of umbilical vein

characteristic: cell type

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: donor id

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: HUVEC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

text: primary cell

text: umbilical vein endothelial cells

text: human

text: endothelial cell of umbilical vein

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: HUVEC

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: abcam

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

characteristic: line

text: Homo sapiens

characteristic: organism


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

text: hepatocellular carcinoma

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: abcam

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

characteristic: cell description

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

text: Lonza

text: lung fibroblasts

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

text: NHLF


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: line

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Lonza

text: osteoblasts (NHOst)

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

text: U

characteristic: cell sex

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

text: Osteobl

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: epidermal keratinocytes

text: human

characteristic: cell organism

text: U

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion

text: NHEK


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K36me3

text: Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts.

text: abcam

text: Lonza

text: lung fibroblasts

characteristic: cell description

text: normal

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

text: NHLF

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K4me2

characteristic: antibody antibodydescription

text: Histone H3 (di methyl K4). Marks promoters and enhancers. Most CpG islands are marked by H3K4me2 in primary cells. May be associated also with poised promoters.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: skeletal muscle myotubes differentiated from the HSMM cell line

text: mesoderm

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

text: HSMMtube


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Millipore

text: Lonza

text: primary cell

characteristic: biomaterial type

text: epidermal keratinocytes

characteristic: cell description

text: human

text: U

text: keratinocyte

characteristic: cell type

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: NHEK

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Refer to the protocol documents for differing sources

characteristic: biomaterial provider

text: primary cell

text: skeletal muscle myoblasts

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: skeletal muscle myoblast

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

text: HSMM

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K9me1

text: Histone H3 (mono-methyl K9). Is associated with active and accessible regions. NOTE CONTRAST to H3K9me3 which is associated with repressive heterochromatic state.

text: abcam

text: Lonza

text: umbilical vein endothelial cells

characteristic: cell description

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: HUVEC

characteristic: title


text: ENCODE DCC

text: live

text: Generic

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: primary cell

characteristic: biomaterial type

text: osteoblasts (NHOst)

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: osteoblast

characteristic: cell type

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: donor id

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism

text: Osteobl


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: abcam

text: Lonza

text: primary cell

text: mammary epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

text: human

text: U

text: mammary epithelial cell

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: HMEC

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H4K20me1

text: Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair.

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: lung fibroblasts

text: normal

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

text: Homo sapiens

characteristic: organism

text: NHLF


text: ENCODE DCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: abcam

text: Lonza

text: primary cell

characteristic: biomaterial type

text: mammary epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

text: human

text: U

characteristic: cell sex

text: mammary epithelial cell

characteristic: cell type

text: std

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: HMEC

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: rabbit polyclonal. Antibody Target: H3K4me3

text: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

text: ab8580; 07-473

characteristic: antibody vendorid

text: 1)abcam; 2)Millipore

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K9ac

characteristic: antibody antibodydescription

text: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

characteristic: antibody targetdescription

text: abcam

text: Lonza

text: adult dermal fibroblasts

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: softwareversion

text: NHDF-Ad

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: rabbit polyclonal. Antibody Target: H3K4me1

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: astrocytes (also called Astrocy)

text: normal

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

text: NH-A


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: rabbit polyclonal. Antibody Target: H3K36me3

characteristic: antibody antibodydescription

text: Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts.

characteristic: antibody targetdescription

text: abcam

text: ATCC

text: immortalized cell line

characteristic: biomaterial type

text: human

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

characteristic: line

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: antibody

text: ab8580; 07-473

characteristic: antibody vendorid

text: 1)abcam; 2)Millipore

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: primary cell

text: mammary epithelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: mammary epithelial cell

characteristic: cell type

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

characteristic: donor id

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

text: HMEC

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: abcam

text: Lonza

text: mammary epithelial cells

text: normal

text: ectoderm

text: human

text: U

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion

text: HMEC


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Homo sapiens

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Lonza

text: umbilical vein endothelial cells

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Illumina_GA2e and Illumina_GA2x

characteristic: labversion

text: Homo sapiens

text: HUVEC

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Lonza

characteristic: biomaterial provider

text: umbilical vein endothelial cells

characteristic: cell description

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

text: Illumina_GA2e and Illumina_GA2x

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion

text: HUVEC


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: abcam

text: Lonza

text: in vitro differentiated cells

characteristic: biomaterial type

text: skeletal muscle myotubes differentiated from the HSMM cell line

text: mesoderm

characteristic: cell lineage

text: human

text: U

characteristic: cell sex

text: myotube

characteristic: cell type

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: donor id

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

text: HSMMtube

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K27ac

characteristic: antibody antibodydescription

text: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: WiCell Research Institute

characteristic: biomaterial provider

text: stem cell

text: embryonic stem cells

characteristic: cell description

text: inner cell mass

text: human

characteristic: cell organism

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

text: Chromatin IP Sequencing

text: Broad

text: Bernstein - Broad Institute

characteristic: line

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: softwareversion


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Millipore

text: ATCC

text: mesoderm

characteristic: cell lineage

text: human

text: std

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Broad

characteristic: lab

text: Bernstein - Broad Institute

characteristic: lab description

text: Homo sapiens

characteristic: title

characteristic: treatment description