text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Brazilian Creole

text: Sheep breed Brazilian Creole

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


status: PUBLIC

characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

tag: attribute

characteristic: biosamplemodel

text: Castellana

characteristic: breed

text: Sheep breed Castellana

characteristic: description

text: Ovis aries

characteristic: organism

text: blood

characteristic: source of DNA

text: Generic sample from Ovis aries

characteristic: title


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Changthangi

text: Sheep breed Changthangi

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Cheviot

text: Sheep breed Cheviot

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Romney

text: Sheep breed Romney

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Swiss Mirror

text: Sheep breed Swiss Mirror

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Sumatra

text: Sheep breed Sumatra

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Valais Blacknose

text: Sheep breed Valais Blacknose

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Northern Tibetan

text: Sheep breed Northern Tibetan

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Ovis dalli

text: Sheep breed Ovis dalli

text: Ovis dalli

text: blood

text: Generic sample from Ovis dalli


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Ethiopian Menz

text: Sheep breed Ethiopian Menz

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Garut

text: Sheep breed Garut

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Karya

text: Sheep breed Karya

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Merino

text: Sheep breed Merino

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Norduz

text: Sheep breed Norduz

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Ronderib Afrikaner

text: Sheep breed Ronderib Afrikaner

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Afshari

text: Sheep breed Afshari

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Turkish Awassi

text: Sheep breed Turkish Awassi

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Bangladeshi

text: Sheep breed Bangladeshi

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Brazilian Creole

text: Sheep breed Brazilian Creole

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Castellana

text: Sheep breed Castellana

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Cine Capari

text: Sheep breed Cine Capari

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Dollgellau Welsh Mountain

text: Sheep breed Dollgellau Welsh Mountain

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Salz

text: Sheep breed Salz

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Sakiz

text: Sheep breed Sakiz

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Swiss White Alpine

text: Sheep breed Swiss White Alpine

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Sumatra

text: Sheep breed Sumatra

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Welsh Hardy Speckled Face

text: Sheep breed Welsh Hardy Speckled Face

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Tregaon Welsh mountain

text: Sheep breed Tregaon Welsh mountain

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Finnsheep

text: Sheep breed Finnsheep

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Ovis dalli

text: Sheep breed Ovis dalli

text: Ovis dalli

text: blood

text: Generic sample from Ovis dalli


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Garut

text: Sheep breed Garut

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Karakas

text: Sheep breed Karakas

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Merino

text: Sheep breed Merino

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Norduz

text: Sheep breed Norduz

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Ronderib Afrikaner

text: Sheep breed Ronderib Afrikaner

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Awassi

text: Sheep breed Awassi

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: African White Dorper

text: Sheep breed African White Dorper

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Turkish Awassi

text: Sheep breed Turkish Awassi

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Changthangi

text: Sheep breed Changthangi

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Churra

text: Sheep breed Churra

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Cheviot

text: Sheep breed Cheviot

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Swiss White Alpine

text: Sheep breed Swiss White Alpine

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Texel

text: Sheep breed Texel

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Garole

text: Sheep breed Garole

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Indian Garole

text: Sheep breed Indian Garole

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Finnsheep

text: Sheep breed Finnsheep

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Gulf Coast native

text: Sheep breed Gulf Coast native

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Namaqua Afrikaner

text: Sheep breed Namaqua Afrikaner

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Ojalada

text: Sheep breed Ojalada

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

text: Poll Dorset

text: Sheep breed Poll Dorset

text: Ovis aries

text: blood

text: Generic sample from Ovis aries


text: ENCODE DCC

text: live

text: Generic

characteristic: antibody

text: Rabbit polyclonal, immunogen is synthetic peptide, corresponding to a region within amino acids 427-477 of Human MAZ, GenBank BAA33064.1. Antibody Target: MAZ

characteristic: antibody antibodydescription

text: May function as a transcription factor with dual roles in transcription initiation and termination. Binds to two sites, ME1a1 and ME1a2, within the MYC promoter having greater affinity for the former. Also binds to multiple G/C-rich sites within the promoter of the Sp1 family of transcription factors.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_HeLa-S3_MAZ_(ab85725)_IgG-rab

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NFKB

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: NFKB

characteristic: antibody antibodydescription

text: Epitope mapping at the C-terminus of NF-kappa-B p65 of human origin, recommended for detection of NFkB p65 of m, r and h origin by WB, IP, IF and ELISA

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell

text: lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: remapped from hg18, Data paired with GM19099_IgG_Control

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM19099_TNFa_NFKB_IgG-rab

characteristic: title

text: TNFa

characteristic: treatment

text: human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: CEBPZ

text: Rabbit polyclonal, immunogen sequence= KDNASLKQLRWEAERDDWLHNRDAKSIIKKKKHFKKKRIKTTQKTKKQRK. Antibody Target: CEBPZ

text: Stimulates transcription from the HSP70 promoter.

text: Sigma-Aldrich

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, Immunogen: A synthetic peptide, which represented a portion of human Dead Ringer-Like 1 encoded within exon 8. Antibody Target: ARID3A

characteristic: antibody antibodydescription

text: This gene encodes a member of the ARID (AT-rich interaction domain) family of DNA binding proteins. It was found by homology to the Drosophila dead ringer gene, which is important for normal embryogenesis. Other ARID family members have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation, and possibly in chromatin structure modification. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Novus Biologicals

characteristic: antibody vendorname

text: ATCC

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HepG2_ARID3A_(NB100-279)_IgG-rab

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal; epitope mapping at the C-terminus of Stat3 of mouse origin. Antibody Target: STAT3

text: Member of STAT family. After phosphorylation in response to cytokines and growth factors (including IFNs, EGF, IL5, IL6, HGF, LIF and BMP2), forms homo- or heterodimers that translocate to nucleus and activate transcription. Activates expression of a variety of genes with roles in processes such as cell growth and apoptosis.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: TBP

characteristic: antibody

text: Mouse monoclonal. Immunogen is synthetic peptide conjugated to KLH derived from within residues 1 - 100 of HumanTATA binding protein TBP. Antibody Target: TBP

characteristic: antibody antibodydescription

text: General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: c-Jun

text: Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

text: Santa Cruz Biotech

text: Lonza

characteristic: biomaterial provider

text: HUVEC

characteristic: cell

text: umbilical vein endothelial cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

text: HUVEC

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NFKB

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: NFKB

characteristic: antibody antibodydescription

text: Epitope mapping at the C-terminus of NF-kappa-B p65 of human origin, recommended for detection of NFkB p65 of m, r and h origin by WB, IP, IF and ELISA

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell

text: lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: remapped from hg18, Data paired with GM19193_IgG_Control

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM19193_TNFa_NFKB_IgG-rab

characteristic: title

text: TNFa

characteristic: treatment

text: human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder)


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: TBP

text: abcam

text: ATCC

characteristic: biomaterial provider

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: replicate

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NFKB

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell

text: lymphoblastoid, International HapMap Project, Han Chinese in Beijing, China, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: remapped from hg18, Data paired with GM18526_IgG_Control

characteristic: labversion

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM18526_TNFa_NFKB_IgG-rab

characteristic: title

text: TNFa

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: NFKB

text: Santa Cruz Biotech

text: Coriell

characteristic: biomaterial provider

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, Data paired with GM18505_IgG_Control

text: Homo sapiens

characteristic: replicate

text: Stanford_ChipSeq_GM18505_TNFa_NFKB_IgG-rab

text: TNFa

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, immunogen is synthetic peptide, corresponding to a region within amino acids 427-477 of Human MAZ, GenBank BAA33064.1. Antibody Target: MAZ

characteristic: antibody antibodydescription

text: May function as a transcription factor with dual roles in transcription initiation and termination. Binds to two sites, ME1a1 and ME1a2, within the MYC promoter having greater affinity for the former. Also binds to multiple G/C-rich sites within the promoter of the Sp1 family of transcription factors.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM12878_MAZ_(ab85725)_IgG-mus

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

characteristic: cell

text: lymphoblastoid NIGMS Human Genetic Cell Repository, DNA Polymorphism Discovery Resource Collection, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: replicate

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NFKB

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: NFKB

characteristic: antibody antibodydescription

text: Epitope mapping at the C-terminus of NF-kappa-B p65 of human origin, recommended for detection of NFkB p65 of m, r and h origin by WB, IP, IF and ELISA

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: F

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: remapped from hg18, Data paired with IgG_Control

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_GM12892_TNFa_NFKB_IgG-rab

characteristic: title

text: TNFa

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody description

text: Coriell

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

characteristic: labversion

text: Homo sapiens

characteristic: replicate

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Coriell

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: M

text: IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: remapped from hg18, Data paired with GM12891_IgG_Control.

text: Homo sapiens

characteristic: organism

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: Input

characteristic: antibody description

text: ATCC

characteristic: cell

text: osteosarcoma from the tibia of a 15 year old, J. Ponten and E. Saksela derived this line (originally 2T) in 1964 from a moderately differentiated sarcoma, viruses were not detected during co-cultivation with WI-38 cells or in CF tests against SV40, RSV or adenoviruses, mycoplasma contamination was detected and eliminated in 1972, (PMID: 6081590)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

characteristic: lab description

text: Homo sapiens

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, Immunogen: Synthetic peptide: MKRRLDDQESDVYAAQQRR, corresponding to amino acids 1-19 of Mouse mSin3A. Antibody Target: SIN3A (NB600-1263)

characteristic: antibody antibodydescription

text: Mammalian Sin 3 (mSin 3) is closely related to the yeast SIN3 repressor protein involved in the transcriptional repression of many genes. Containing 4 paired amphipathic helix domains (PAH domains), mSin 3A and mSin 3B have been shown to directly interact with several other transcriptional repressor proteins including HDAC 1, HDAC 2, RbAp 46, the methyl CpG binding protein MeCP 2, the Mad/Max heterodimer, and the corepressors silencing mediator of retinoic acid & thyroid hormone receptor (SMRT) and nuclear receptor corepressor (N-CoR).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Novus Biologicals

characteristic: antibody vendorname

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_H1-hESC_SIN3A_(NB600-1263)_IgG-rab

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Rabbit polyclonal. Raised against synthetic peptide: TTNPKPNKALKVKKEA conjugated to KLH by a C-terminal Cysteine residue linker, corresponding to amino acids 2-17 of Human MAFK. Antibody Target: MafK

text: NFE2 DNA-binding activity consists of a heterodimer containing an 18-kD Maf protein (MafF, MafG, or MafK) and p45. Both subunits are members of the activator protein-1 superfamily of basic leucine zipper (bZIP)proteins. Since they lack a putative transactivation domain, small Mafs behave as transcriptional repressors when they dimerize among themselves. They serve as transcriptional activators by dimerizing with other (usually larger) bZip proteins and recruiting them to specific DNA-binding sites.

text: Abcam

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: Stanford_ChipSeq_HeLa-S3_MafK_(ab50322)_IgG-rab

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Coriell

characteristic: biomaterial provider

text: lymphoblastoid NIGMS Human Genetic Cell Repository, DNA Polymorphism Discovery Resource Collection, treatment: Epstein-Barr Virus transformed

text: normal

text: mesoderm

text: human

text: U

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded. Data paired with GM15510_IgG_Control.

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Abcam

text: WiCell Research Institute

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: Stanford_ChipSeq_H1-hESC_MafK_(ab50322)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1

characteristic: antibody antibodydescription

text: Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: R&D Systems

characteristic: antibody vendorname

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_H1-hESC_Mxi1_(AF4185)_IgG-rab

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit Polyclonal. Antibody Target: P300

text: Santa Cruz Biotech

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CEBPB

characteristic: antibody

text: Rabbit polyclonal IgG. Antibody Target: CEBPB

characteristic: antibody antibodydescription

text: epitope mapping at the C-terminus of C/EBP-beta of rat origin

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: CHD1

text: CHD1 is a member of the CHD (chromodomain-helicase-DNA-binding) family of proteins that interacts with nucleosomes and plays a role in chromatin remodeling to modulate transcription. The members of the CHD family of proteins possess 3 common structural and functional domains: a chromodomain (chromatin organization modifier), an SNF2-like helicase/ATPase domain, and a C-terminal DNA-binding domain. CHD1 has been shown to interact with the transcriptional corepressor NCoR and histone deacetylase 1 indicating a role in transcriptional regulation. CHD1 has also been shown to interact with the Paf1 complex and Rtf1 implicating an additional role in transcriptional elongation. Alternate names for CHD1 include chromodomain-helicase-DNA-binding protein 1, ATP-dependent helicase CHD1, and DKFZp686E2337.

text: Bethyl Laboratories

text: WiCell Research Institute

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: Stanford_ChipSeq_H1-hESC_CHD1_(A301-218A)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal to CHD2 Synthetic peptide derived from within residues 1250 - 1350 of Human CHD2. Antibody Target: CHD2

characteristic: antibody antibodydescription

text: CHD family of proteins are characterized by presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_H1-hESC_CHD2_(AB68301)_IgG-rab

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Max

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

text: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male. - ATCC, newly promoted to tier 2: not in 2011 analysis

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal against peptide conjugated to KLH derived from within residues 1600 - 1700 of S. cerevisiae RNA polymerase II CTD repeat YSPTSPS, phosphorylated at S2. Antibody Target: POL2S2

characteristic: antibody antibodydescription

text: RNA polymerase II, large subunit- specific for phosphorylated C-terminal domain.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_A549_Pol2(phosphoS2)_IgG-rab

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: RAD21

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

text: Abcam

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Bethyl Laboratories

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM12878_CHD1_(A301-218A)_IgG-mus

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal anti-GCN5 antibody (2676), Immunogen : synthetic peptide coupled to Ovalbumin (sequence-MAEPSQAPTPAPAAQPRPLC). Antibody Target: GCN5

text: KAT2A, or GCN5, is a histone acetyltransferase (HAT) that functions primarily as a transcriptional activator. Acetylation of histones gives a specific tag for epigenetic transcription activation. In case of HIV-1 infection, it is recruited by the viral protein Tat. Regulates Tat's transactivating activity and may help inducing chromatin remodeling of proviral genes. Component of the SAGA and ATAC complexes, complexes with histone acetyltransferase activities on histones H3 and H4

text: Laszlo Tora

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: TBP

characteristic: antibody

text: Mouse monoclonal. Immunogen is synthetic peptide conjugated to KLH derived from within residues 1 - 100 of HumanTATA binding protein TBP. Antibody Target: TBP

characteristic: antibody antibodydescription

text: General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: WiCell Research Institute

characteristic: biomaterial provider

text: embryonic stem cells

text: normal

text: inner cell mass

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal against RFX5 peptide corresponding to a region at amino acids 320 to 494 of the human protein conjugated to Keyhole Limpet Hemocyanin. Antibody Target: RFX5

text: Activates transcription from class II MHC promoters. Recognizes X-boxes. Mediates cooperative binding betweenRFX and NF-Y. RFX binds the X1 box of MHC-II promoters

text: Rockland Immunochemicals

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: Stanford_ChipSeq_HepG2_RFX5_(200-401-194)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Raised against synthetic peptide: TTNPKPNKALKVKKEA conjugated to KLH by a C-terminal Cysteine residue linker, corresponding to amino acids 2-17 of Human MAFK. Antibody Target: MafK

characteristic: antibody antibodydescription

text: NFE2 DNA-binding activity consists of a heterodimer containing an 18-kD Maf protein (MafF, MafG, or MafK) and p45. Both subunits are members of the activator protein-1 superfamily of basic leucine zipper (bZIP)proteins. Since they lack a putative transactivation domain, small Mafs behave as transcriptional repressors when they dimerize among themselves. They serve as transcriptional activators by dimerizing with other (usually larger) bZip proteins and recruiting them to specific DNA-binding sites.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_HepG2_MafK_(ab50322)_IgG-rab

characteristic: title

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal. Raised against synthetic peptide corresponding to amino acids 147-163 of human MAFF. The immunizing peptide does not cross-react with other members of the family. Antibody Target: MafF

text: The protein encoded by this gene is a (bZIP) transcription factor that lacks a transactivation domain. It is known to bind the US-2 DNA element in the promoter of the oxytocin receptor (OTR) gene and most likely heterodimerizes with other leucine zipper-containing proteins to enhance expression of the OTR gene during term pregnancy. Can also form homodimers, and since it lacks a transactivation domain, the homodimer may act as a repressor of transcription. May also be involved in the cellular stress response.

text: Sigma-Aldrich

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: Stanford_ChipSeq_HepG2_MafF_(M8194)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal to CHD2 Synthetic peptide derived from within residues 1250 - 1350 of Human CHD2. Antibody Target: CHD2

characteristic: antibody antibodydescription

text: CHD family of proteins are characterized by presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_HepG2_CHD2_(AB68301)_IgG-rab

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Mouse monoclonal, Immunogen corresponding to amino acids 201-286 of Human NRF1. Antibody Target: NRF1

text: NRF1 is the mammalian homolog to the erect wing (ewg) Drosophila protein that is required for proper development of the central nervous system and indirect flight muscles. In mammals NRF1 functions as a transcription factor that activates the expression of the EIF2S1 (EIF-alpha) gene. This protein links the transcriptional modulation of key metabolic genes to cellular growth and development, and has been implicated in the control of nuclear genes required for respiration, heme biosynthesis and mitochondrialDNA transcription and replication. NRF1 forms a homodimer and binds DNA as a dimer. NRF1 shows a nuclear localization and is expressed widely in embryonic, fetal and adult tissues. Phosphorylation of NRF1 enhances DNA binding.

text: Abcam

text: WiCell Research Institute

characteristic: cell

text: embryonic stem cells

characteristic: cell description

text: normal

characteristic: cell karyotype

text: inner cell mass

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: biomaterial provider

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: Input signal from Normal Mouse IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal raised against synthetic peptide representing a portion within the last 100 amino acids of the human Structural Maintenance of Chromosomes-3 conjugated to KLH. Antibody Target: SMC3

text: Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication.

text: Abcam

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

text: Stanford_ChipSeq_K562_SMC3_(ab9263)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Raised against synthetic peptide: TTNPKPNKALKVKKEA conjugated to KLH by a C-terminal Cysteine residue linker, corresponding to amino acids 2-17 of Human MAFK. Antibody Target: MafK

characteristic: antibody antibodydescription

text: NFE2 DNA-binding activity consists of a heterodimer containing an 18-kD Maf protein (MafF, MafG, or MafK) and p45. Both subunits are members of the activator protein-1 superfamily of basic leucine zipper (bZIP)proteins. Since they lack a putative transactivation domain, small Mafs behave as transcriptional repressors when they dimerize among themselves. They serve as transcriptional activators by dimerizing with other (usually larger) bZip proteins and recruiting them to specific DNA-binding sites.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_K562_MafK_(ab50322)_IgG-rab

characteristic: title

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

text: RNA Polymerase II

text: Covance

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

text: pravastatin

characteristic: treatment

text: For sterol deprivation, cells were cultured with pravastatin (2 uM, Sigma) in DMEM with 0.5% BSA for 16 h. (Snyder)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: remapped from hg18

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Yale_ChipSeq_HepG2_pravastatin_Input_std

characteristic: title

text: pravastatin


text: ENCODE DCC

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: SREBP2

characteristic: antibody antibodydescription

text: Sterol regulatory element binding transcription factor 2

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Cayman Chemical

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: hepatocellular carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

text: Yale_ChipSeq_HepG2_pravastatin_SREBP2_std

text: pravastatin

characteristic: treatment


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: SREBP1

characteristic: antibody antibodydescription

text: Sterol regulatory element binding transcription factor 1

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: remapped from hg18

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Yale_ChipSeq_HepG2_pravastatin_SREBP1_std

characteristic: title

text: pravastatin

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: mouse monoclonal IgG1. Antibody Target: POL3

text: RNA Polymerase III

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: Incomplete fastq due to Illumina pipeline version

characteristic: labversion

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Fos

characteristic: antibody

text: Rabbit polyclonal to amino acids 210-335 mapping at the C-terminus of c-Fos of human origin. Antibody Target: c-Fos

characteristic: antibody antibodydescription

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: Contains incomplete fastq files

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Max

text: Rabbit polyclonal IgG, epitope mapping at the C-terminus of Max of human origin. Antibody Target: Max

text: The protein encoded by this gene is a member of the basic helix-loop-helix leucine zipper (bHLHZ) family of transcription factors. It is able to form homodimers and heterodimers with other family members, which include Mad, Mxi1 and Myc. Myc is an oncoprotein implicated in cell proliferation, differentiation and apoptosis. The homodimers and heterodimers compete for a common DNA target site (the E box) and rearrangement among these dimer forms provides a complex system of transcriptional regulation. Multiple alternatively spliced transcript variants have been described for this gene but the full-length nature for some of them is unknown (RefSeq).

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: Contains incomplete fastq files

characteristic: labversion

text: Homo sapiens

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal. Antibody Target: RAD21

characteristic: antibody antibodydescription

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

text: cancer

text: mesoderm

text: human

text: F

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Yale

text: Snyder - Yale University

text: Contains incomplete fastq files

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: c-Myc

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: cell

text: cervical carcinoma

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Yale

characteristic: lab

text: Snyder - Yale University

characteristic: lab description

text: Contains incomplete fastq files

characteristic: labversion

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: neuroblastoma clonal subline of the neuroepithelioma cell line SK-N-SH from the 1970 bone marrow biopsy of a 4-year-old girl with metastatic neuroblastoma, trisomy of 1q

text: cancer

text: ectoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

text: Farnham - University of Southern California

text: Homo sapiens

characteristic: organism

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: Coriell

characteristic: cell

text: lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Illumina 2.0, low confidence sequences excluded

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: Coriell

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, llumina 2.0, low confidence sequences excluded. Data paired with GM19099_IgG_Control.

characteristic: labversion

text: Homo sapiens

characteristic: organism


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: RNA Polymerase II

text: Covance

text: Coriell

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded. Data paired with GM19193_IgG_Control.

text: Homo sapiens

characteristic: replicate

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, a synthetic peptide corresponding to residues in C-terminus of human ELK-1 was used as immunogen. The antibody does not cross-react with other ETS family members. Antibody Target: ELK1

characteristic: antibody antibodydescription

text: Elk-1 is a transcription factor that is part of the ets oncogene superfamily. Elk-1 forms a ternary complex with the serum response factors, SRE and SRF, mediating gene activity in response to serum and growth factors. Activation by several mitogen- activated protein kinases (Erk1 and Erk2) mediates the immediate early responses of the c-fos promoter to growth factors and other stimuli.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Epitomics

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

text: Stanford_ChipSeq_HeLa-S3_ELK1_(1277-1)_IgG-rab


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody description

text: Invitrogen

characteristic: cell

text: embryonic kidney cells transformed with Adenovirus 5 DNA stably expressing tetracycline repressor, HEK293 (ATCC number CRL-1573) is the parental cell line, hypotriploid, XXX

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Homo sapiens

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: JunD

characteristic: antibody

text: rabbit polyclonal IgG. Antibody Target: JunD

characteristic: antibody antibodydescription

text: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: GATA2

text: GATA binding protein 2

text: Donated by Dr. E.H. Bresnick, UW Madison

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Fragmented using Bioruptor, precipitated with StaphA

text: Homo sapiens

text: PeakSeq1.0 (fdr 0.001)

characteristic: softwareversion

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Mouse polyclonal antibody raised against a partial recombinant ZNF274 (GST-fusion of a.a.420-531 of human ZNF274 protein). Works in IP, WB and ELISA. Antibody Target: ZNF274

characteristic: antibody antibodydescription

text: ZNF274 is a zinc finger protein containing five C2H2-type zinc finger domains, two Kruppel-associated box A (KRABA) domains, and a leucine-rich SCAN domain. The encoded protein has been suggested to be a transcriptional repressor. It localizes predominantly to the nucleolus.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: ABNOVA

characteristic: antibody vendorname

text: Coriell

characteristic: biomaterial provider

text: lymphoblastoid cell line, Instability of heterochromatin of chromosomes 1, 9, and 16 with variable combined immunodeficiency; dysmorphic facial features, developmental delay, malabsorption, and recurrent infections; see GM08747 Fibroblast; donor subject is a compound heterozygote: one allele has a G>A transition at nucleotide 1807 (1807G>A) of the DNMT3B gene resulting in an Ala to Thr substitution at codon 603 [Ala603Thr (A603T)], the mutation occurring in a region between motifs I and IV within the catalytic domain of DNMT3B; the second allele has a G>A transition within intron 22 located 11 nucleotides 5-prime of the normal splice acceptor site [IVS22AS,G>A,-11] resulting in the generation of a novel splice acceptor site and a 9-bp insertion in the processed RNA. This results in the insertion of 3 amino acids (serine, threonine, and proline) at codon 744 (744ins3). The insertion was within the conserved region of the catalytic domain, which is likely to be disrupted by the insertion of a proline residue. This mutation was de novo.

text: mesoderm

text: human

text: F

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

text: Farnham - University of Southern California

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: E2F4

text: mapping at the C-terminus of E2F4 of human origin

text: Santa Cruz Biotech

text: Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

characteristic: cell

text: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, Immunogen: Synthetic peptide: MKRRLDDQESDVYAAQQRR, corresponding to amino acids 1-19 of Mouse mSin3A. Antibody Target: SIN3A (NB600-1263)

characteristic: antibody antibodydescription

text: Mammalian Sin 3 (mSin 3) is closely related to the yeast SIN3 repressor protein involved in the transcriptional repression of many genes. Containing 4 paired amphipathic helix domains (PAH domains), mSin 3A and mSin 3B have been shown to directly interact with several other transcriptional repressor proteins including HDAC 1, HDAC 2, RbAp 46, the methyl CpG binding protein MeCP 2, the Mad/Max heterodimer, and the corepressors silencing mediator of retinoic acid & thyroid hormone receptor (SMRT) and nuclear receptor corepressor (N-CoR).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Novus Biologicals

characteristic: antibody vendorname

characteristic: biomaterial provider

text: normal

text: mesoderm

text: human

text: F

text: IgG-mus

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_GM12878_SIN3A_(NB600-1263)_IgG-mus


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: Rabbit polyclonal. Antibody Target: RAD21

text: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

text: Abcam

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: title

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Anti-GATA-1 rabbit polyclonal antibody was generated by using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1

characteristic: antibody antibodydescription

text: GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Donated by Dr. E.H. Bresnick, UW Madison

characteristic: antibody vendorname

text: Bouhassira Lab

characteristic: biomaterial provider

text: PBDEFetal

text: peripheral blood-derived erythroblasts from 16-19 week human fetal liver

text: normal

text: mesoderm

text: human

text: U

text: UCDavis

text: Input library was prepared at UC Davis.

text: ChipSeq

text: Chromatin IP Sequencing

text: USC

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: PBDEFetal


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Bouhassira Lab

text: PBDEFetal

characteristic: cell

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: cell sex

text: UCDavis

characteristic: control

text: Input library was prepared at UC Davis.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: USC

characteristic: lab

text: Farnham - University of Southern California

text: Homo sapiens

text: PBDEFetal

characteristic: title

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

text: Rabbit polyclonal, immunogen is synthetic peptide, corresponding to a region within amino acids 427-477 of Human MAZ, GenBank BAA33064.1. Antibody Target: MAZ

characteristic: antibody antibodydescription

text: May function as a transcription factor with dual roles in transcription initiation and termination. Binds to two sites, ME1a1 and ME1a2, within the MYC promoter having greater affinity for the former. Also binds to multiple G/C-rich sites within the promoter of the Sp1 family of transcription factors.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: hepatocellular carcinoma

text: cancer

text: endoderm

text: human

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_HepG2_MAZ_(ab85725)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: affinity purified goat polyclonal antibody raised against a peptide mapping at the N-terminus of ARID3A of human origin. Antibody Target: ARID3A

text: This gene encodes a member of the ARID (AT-rich interaction domain) family of DNA binding proteins. It was found by homology to the Drosophila dead ringer gene, which is important for normal embryogenesis. Other ARID family members have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation, and possibly in chromatin structure modification. (provided by RefSeq)

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

text: leukemia, The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

text: Stanford_ChipSeq_K562_ARID3A_(sc-8821)_IgG-rab

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: cancer

text: mesoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: Stanford_ChipSeq_K562_MAZ_(ab85725)_IgG-rab


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: UBF (F-9) is a mouse monoclonal antibody raised against amino acids 1-220 of UBF of human origin. Antibody Target: UBF

text: Upstream binding factor (UBF) is a transcription factor required for expression of the 18S, 5.8S, and 28S ribosomal RNAs, along with SL1 (a complex of TBP (MIM 600075) and multiple TBP-associated factors or 'TAFs'). Two UBF polypeptides, of 94 and 97 kD, exist in the human (Bell et al., 1988 (PubMed 3413483)). UBF is a nucleolar phosphoprotein with both DNA binding and transactivation domains. Sequence-specific DNA binding to the core and upstream control elements of the human rRNA promoter is mediated through several HMG boxes

text: Santa Cruz Biotech

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford

characteristic: lab

text: Snyder - Stanford University

text: Homo sapiens

text: Stanford_ChipSeq_K562_UBF_(sc-13125)_IgG-mus

characteristic: title

characteristic: treatment description


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18, Illumina 2.0, low confidence sequences excluded

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: Sheep polyclonal, immunogen: CPVTLTSQTTKTDDPQL. Antibody Target: ATF1

characteristic: antibody antibodydescription

text: ATF1 is a bZip transcription factor from the CREB family. ATF1 binds to both cAMP response elements (TGACGTCA).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: cell

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: F

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Harvard

characteristic: lab

text: Struhl - Harvard University

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Jun

characteristic: antibody

text: Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun

text: Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

text: Santa Cruz Biotech

text: ATCC

characteristic: biomaterial provider

text: cervical carcinoma

text: cancer

text: ectoderm

text: human

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford

text: Snyder - Stanford University

characteristic: lab description

text: remapped from hg18

characteristic: labversion

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title

characteristic: treatment description