characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal, epitope corresponding to amino acids 246-310 mapping within an internal region of CoREST of human origin recommended for detection of CoREST of mouse, rat and human origin. Antibody Target: COREST (sc30189)

text: Essential component of the BHC complex, a corepressor complex that represses transcription of neuron-specific genes in non-neuronal cells. In the BHC complex, it serves as a molecular beacon for the recruitment of molecular machinery, including MeCP2 and SUV39H1, that imposes silencing across a chromosomal interval. Plays a central role in demethylation of Lys-4 of histone H3 by promoting demethylase activity of KDM1A on core histones and nucleosomal substrates.

text: Santa Cruz Biotech

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: strain

characteristic: strain description

text: Stanford_ChipSeq_CH12_COREST_(sc-30189)_IgG-rab

characteristic: treatment description


status: PUBLIC

characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

tag: attribute

characteristic: age

text: Immortal cells

characteristic: age description

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: IgG-rat

text: Input signal from Normal Rat IgG ChIP-seq

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

characteristic: replicate

text: MEL

text: Unknown strain origin

text: Stanford_ChipSeq_MEL_Input_DMSO_2.0pct_IgG-rat

characteristic: title

characteristic: treatment

text: 5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)


text: ENCODE DCC

characteristic: INSDC last update

text: live

text: Generic

text: immortalized

text: Immortal cells

text: UBF (F-9) is a mouse monoclonal antibody raised against amino acids 1-220 of UBF of human origin. Antibody Target: UBF

characteristic: antibody antibodydescription

text: Upstream binding factor (UBF) is a transcription factor required for expression of the 18S, 5.8S, and 28S ribosomal RNAs, along with SL1 (a complex of TBP (MIM 600075) and multiple TBP-associated factors or 'TAFs'). Two UBF polypeptides, of 94 and 97 kD, exist in the human (Bell et al., 1988 (PubMed 3413483)). UBF is a nucleolar phosphoprotein with both DNA binding and transactivation domains. Sequence-specific DNA binding to the core and upstream control elements of the human rRNA promoter is mediated through several HMG boxes

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-mus

characteristic: control

text: Input signal from Normal Mouse IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

text: MEL

text: Unknown strain origin

characteristic: strain description

text: Stanford_ChipSeq_MEL_UBF_(sc-13125)_IgG-mus

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

characteristic: labversion

text: Mus musculus

characteristic: organism

text: MEL

text: Unknown strain origin

text: Stanford_ChipSeq_MEL_COREST_(sc-30189)_IgG-rab

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal, immunogen is synthetic peptide, corresponding to a region within amino acids 427-477 of Human MAZ, GenBank BAA33064.1. Antibody Target: MAZ

text: May function as a transcription factor with dual roles in transcription initiation and termination. Binds to two sites, ME1a1 and ME1a2, within the MYC promoter having greater affinity for the former. Also binds to multiple G/C-rich sites within the promoter of the Sp1 family of transcription factors.

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

text: MEL

text: Unknown strain origin

characteristic: strain description

text: Stanford_ChipSeq_MEL_MAZ_(ab85725)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: Rabbit polyclonal IgG. Antibody Target: Nrf2

characteristic: antibody antibodydescription

text: epitope corresponding to amino acids 1-180 mapping at the N-terminus of GABP-alpha of human origin

characteristic: antibody targetdescription

text: Santa Cruz Biotech

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

text: MEL

text: Unknown strain origin

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal antibody. The immunogen recognized by this antibody maps to a region between residue 250 and 300 of human zinc finger CCCH-type containing 11A.

text: ZC3H11A is a C3H1-type zinc finger protein. ZC3H11A has been identified as a protein that is phosphorylated upon DNA damage by ATM or ATR. The function of ZC3H11A remains uncharacterized.

characteristic: antibody vendorid

text: NovusBio

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: strain

text: Derived by inbreeding from selected F2 progeny of B10.A X B10.129

characteristic: strain description

text: Stanford_ChipSeq_CH12_ZC3H11A_(NB100-74650)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: Rabbit Polyclonal against synthetic peptide conjugated to KLH derived from within residues 200 - 300 of Human Zinc finger MIZ domain-containing protein 1.

characteristic: antibody antibodydescription

text: Zinc finger MIZ domain-containing protein 1 that increases ligand-dependent transcriptional activity of AR and promotes AR sumoylation. The stimulation of AR activity is dependent upon sumoylation.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

text: Stanford_ChipSeq_CH12_ZNF-MIZD-CP1_(ab65767)_IgG-rab

characteristic: title


characteristic: External Id

text: ENCODE DCC

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal, maps to a region between residues 350 and the C-terminus (residue 412). Antibody Target: BHLHE40

text: This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differentiation.

text: Novus

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

characteristic: labversion

text: Mus musculus

text: MEL

text: Unknown strain origin

characteristic: strain description

text: Stanford_ChipSeq_MEL_BHLHE40_(NB100-1800)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: Rabbit polyclonalantibody against residue 1700 and 1750 of human host cell factor C1

characteristic: antibody antibodydescription

text: The epitope recognized by this antibody maps to a region between residue 1700 and 1750 of human host cell factor C1 (VP16-accessory protein).

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: NovusBio

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: Input signal from Normal Rabbit IgG ChIP-seq.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

characteristic: strain

text: Stanford_ChipSeq_CH12_HCFC1_(NB100-68209)_IgG-rab

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal generated using the immunogen: Zinc finger protein 384 recombinant protein epitope signature tag (PrEST)

text: This gene encodes a C2H2-type zinc finger protein, which may function as a transcription factor. This gene also contains long CAG trinucleotide repeats that encode consecutive glutamine residues. The protein appears to bind and regulate the promoters of the extracellular matrix genes MMP1, MMP3, MMP7 and COL1A1. Studies in mouse suggest that nuclear matrix transcription factors (NP/NMP4) may be part of a general mechanical pathway that couples cell construction and function during extracellular matrix remodeling. Alternative splicing results in multiple transcript variants. Recurrent rearrangements of this gene with the Ewing's sarcoma gene, EWSR1 on chromosome 22, or with the TAF15 gene on chromosome 17, or with the TCF3 (E2A) gene on chromosome 19, have been observed in acute leukemia. A related pseudogene has been identified on chromosome 7.

text: SIGMA

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: strain description

text: Stanford_ChipSeq_CH12_ZNF384_(HPA004051)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: SIGMA

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

text: MEL

text: Unknown strain origin

text: Stanford_ChipSeq_MEL_ZNF384_(HPA004051)_IgG-rab

characteristic: title


text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Abcam

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

text: MEL

text: Unknown strain origin

characteristic: strain description

text: Stanford_ChipSeq_MEL_ZNF-MIZD-CP1_(ab65767)_IgG-rab

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: NovusBio

text: Santos lab

text: mouse embryonic stem cell line E14

text: mouse

text: M

text: std

text: Standard input signal for most experiments.

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

characteristic: strain

text: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.

text: Stanford_ChipSeq_ES-E14_HCFC1_(NB100-68209)_std

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal IgG. Antibody Target: Nrf2

text: epitope corresponding to amino acids 1-180 mapping at the N-terminus of GABP-alpha of human origin

text: Santa Cruz Biotech

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

text: Derived by inbreeding from selected F2 progeny of B10.A X B10.129

characteristic: strain description

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: Rabbit polyclonal, immunogen is synthetic peptide, corresponding to a region within amino acids 427-477 of Human MAZ, GenBank BAA33064.1. Antibody Target: MAZ

characteristic: antibody antibodydescription

text: May function as a transcription factor with dual roles in transcription initiation and termination. Binds to two sites, ME1a1 and ME1a2, within the MYC promoter having greater affinity for the former. Also binds to multiple G/C-rich sites within the promoter of the Sp1 family of transcription factors.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

characteristic: labversion

text: Mus musculus

characteristic: organism

characteristic: strain

text: Stanford_ChipSeq_CH12_MAZ_(ab85725)_IgG-rab

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal anti-GCN5 antibody (2676), Immunogen : synthetic peptide coupled to Ovalbumin (sequence-MAEPSQAPTPAPAAQPRPLC). Antibody Target: GCN5

text: KAT2A, or GCN5, is a histone acetyltransferase (HAT) that functions primarily as a transcriptional activator. Acetylation of histones gives a specific tag for epigenetic transcription activation. In case of HIV-1 infection, it is recruited by the viral protein Tat. Regulates Tat's transactivating activity and may help inducing chromatin remodeling of proviral genes. Component of the SAGA and ATAC complexes, complexes with histone acetyltransferase activities on histones H3 and H4

text: Laszlo Tora

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

characteristic: cell

text: B-cell lymphoma (GM12878 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: F

characteristic: cell sex

text: IgG-rab

characteristic: control

text: Input signal from Normal Rabbit IgG ChIP-seq.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: strain description

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

text: Rabbit polyclonal, The epitope recognized by this antibody maps to a region between residue 1660 and 1710 of human chromodomain helicase DNA binding protein 1 using the numbering given in entry NP_001261.2 (GeneID 1105). Antibody Target: CHD1

characteristic: antibody antibodydescription

text: ATP-dependent chromatin-remodeling factor which functions as substrate recognition component of the transcription regulatory histone acetylation (HAT) complex SAGA. Regulates polymerase II transcription. Also required for efficient transcription by RNA polymerase I, and more specifically the polymerase I transcription termination step. Also required to maintain a specific chromatin configuration across the genome. Is also associated with histone deacetylase (HDAC) activity (By similarity). Required for the bridging of SNF2, the FACT complex, the PAF complex as well as the U2 snRNP complex to H3K4me3. Required for maintaining open chromatin and pluripotency in embryonic stem cells

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Novus Biologicals

text: Weissman lab

text: B-cell lymphoma (GM12878 analog)

text: mouse

text: F

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

characteristic: strain

text: Stanford_ChipSeq_CH12_CHD1_(NB100-60411)_IgG-rab

characteristic: title

text: No special treatment or protocol applies


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Laszlo Tora

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: IgG-rab

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

text: MEL

text: Unknown strain origin

characteristic: strain description

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: immortalized

characteristic: age

text: Immortal cells

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Novus Biologicals

text: Weissman lab

text: MEL

text: Leukemia (K562 analog)

text: mouse

text: M

text: IgG-rab

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

text: MEL

text: Unknown strain origin

text: Stanford_ChipSeq_MEL_CHD1_(NB100-60411)_IgG-rab

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Rabbit polyclonal. Raised against synthetic peptide: TTNPKPNKALKVKKEA conjugated to KLH by a C-terminal Cysteine residue linker, corresponding to amino acids 2-17 of Human MAFK. Antibody Target: MafK

text: NFE2 DNA-binding activity consists of a heterodimer containing an 18-kD Maf protein (MafF, MafG, or MafK) and p45. Both subunits are members of the activator protein-1 superfamily of basic leucine zipper (bZIP)proteins. Since they lack a putative transactivation domain, small Mafs behave as transcriptional repressors when they dimerize among themselves. They serve as transcriptional activators by dimerizing with other (usually larger) bZip proteins and recruiting them to specific DNA-binding sites.

text: Abcam

characteristic: antibody vendorname

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

characteristic: labversion

text: Mus musculus

text: MEL

text: Unknown strain origin

characteristic: strain description

text: Stanford_ChipSeq_MEL_MafK_(ab50322)_DMSO_2.0pct_std

characteristic: treatment

text: 5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

text: Rabbit polyclonal generated using the immunogen: Zinc finger protein 384 recombinant protein epitope signature tag (PrEST)

characteristic: antibody antibodydescription

text: This gene encodes a C2H2-type zinc finger protein, which may function as a transcription factor. This gene also contains long CAG trinucleotide repeats that encode consecutive glutamine residues. The protein appears to bind and regulate the promoters of the extracellular matrix genes MMP1, MMP3, MMP7 and COL1A1. Studies in mouse suggest that nuclear matrix transcription factors (NP/NMP4) may be part of a general mechanical pathway that couples cell construction and function during extracellular matrix remodeling. Alternative splicing results in multiple transcript variants. Recurrent rearrangements of this gene with the Ewing's sarcoma gene, EWSR1 on chromosome 22, or with the TAF15 gene on chromosome 17, or with the TCF3 (E2A) gene on chromosome 19, have been observed in acute leukemia. A related pseudogene has been identified on chromosome 7.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: SIGMA

characteristic: antibody vendorname

text: Santos lab

text: mouse embryonic stem cell line E14

text: mouse

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

characteristic: strain

text: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.

text: Stanford_ChipSeq_ES-E14_ZNF384_(HPA004051)_std

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Anti-GATA-1 rabbit polyclonal antibody was generated by using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1

text: GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells.

text: Donated by Dr. E.H. Bresnick, UW Madison

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

characteristic: labversion

text: Mus musculus

text: MEL

text: Unknown strain origin

characteristic: strain description

text: Stanford_ChipSeq_MEL_GATA-1_DMSO_2.0pct_std

characteristic: treatment

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Abcam

characteristic: antibody vendorname

text: Santos lab

text: mouse embryonic stem cell line E14

text: mouse

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

characteristic: strain

text: Stanford_ChipSeq_ES-E14_MafK_(ab50322)_std

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Embryonic day 0 (stem cell)

text: Rabbit polyclonal antibody. The immunogen recognized by this antibody maps to a region between residue 250 and 300 of human zinc finger CCCH-type containing 11A.

text: ZC3H11A is a C3H1-type zinc finger protein. ZC3H11A has been identified as a protein that is phosphorylated upon DNA damage by ATM or ATR. The function of ZC3H11A remains uncharacterized.

text: NovusBio

text: Santos lab

characteristic: biomaterial provider

characteristic: cell

text: mouse embryonic stem cell line E14

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

characteristic: strain description

text: Stanford_ChipSeq_ES-E14_ZC3H11A_(NB100-74650)_std

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: age

text: Embryonic day 0 (stem cell)

characteristic: age description

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: Santos lab

text: mouse embryonic stem cell line E14

text: mouse

text: M

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Stanford-m

text: Snyder - Stanford University

text: Mus musculus

characteristic: organism

characteristic: replicate

characteristic: strain

characteristic: title

text: No special treatment or protocol applies


text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: immortalized

text: Immortal cells

text: Input

text: Weissman lab

characteristic: biomaterial provider

text: MEL

characteristic: cell

text: Leukemia (K562 analog)

characteristic: cell description

text: mouse

characteristic: cell organism

text: M

characteristic: cell sex

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: Stanford-m

characteristic: lab

text: Snyder - Stanford University

characteristic: lab description

text: Mus musculus

text: MEL

text: Unknown strain origin

characteristic: strain description

text: Stanford_ChipSeq_MEL_Input_DMSO_2.0pct_std

characteristic: treatment


characteristic: External Id

text: UPR9022, IBMC, CNRS

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: cell line

text: mock

characteristic: infection

text: Invertebrate iridescent virus 6

characteristic: organism

text: Drosophila S2 cells

characteristic: title


text: UPR9022, IBMC, CNRS

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Invertebrate iridescent virus 6

text: Invertebrate iridescent virus 6

text: Drosophila S2 cells


text: UPR9022, IBMC, CNRS

text: live

text: Generic

text: Invertebrate iridescent virus 6

text: Invertebrate iridescent virus 6

text: Adult flies

text: yw

characteristic: strain

text: whole organism

characteristic: tissue


text: UPR9022, IBMC, CNRS

text: live

text: Generic

text: Invertebrate iridescent virus 6

text: Invertebrate iridescent virus 6

text: Adult flies

text: Dcr-2-/-; yw

text: whole organism


text: Young Lab, Whitehead Institute for Biomedical Research

text: live

text: Generic

text: Abcam AB4729

characteristic: antibody catalog number

text: H1 embryonic stem cells

characteristic: cell type

characteristic: chip antibody

characteristic: drug concentration

text: Activin

characteristic: drug treatment

characteristic: duration of treatment

text: Homo sapiens

text: Chromatin IP against 48hr_H3K27ac


characteristic: External Id

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Millipore 07-473

text: H1 embryonic stem cells

text: Activin

text: Homo sapiens

text: Chromatin IP against 48hr_H3K4me3


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Millipore 12-370

text: H1 embryonic stem cells

text: IgG

text: Activin

text: Homo sapiens

characteristic: organism

text: Chromatin IP against 48hr_IgG


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: H1 embryonic stem cells

text: Homo sapiens

text: RNA-seq H1-hESC

characteristic: title


text: live

text: Generic

text: H1 embryonic stem cells

text: Activin

text: Homo sapiens

text: RNA-seq H1-hESC-48hr-Activin


text: live

text: Generic

text: Santa Cruz 32323-ac

characteristic: antibody catalog number

text: H1 embryonic stem cells

text: BrdU

text: TCGTATGCCGTCTTCTGCTTG

text: Homo sapiens

text: GRO-seq H1-hESC


text: live

text: Generic

text: Santa Cruz 32323-ac

text: H1 embryonic stem cells

characteristic: cell type

text: BrdU

text: TCGTATGCCGTCTTCTGCTTG

text: Homo sapiens

text: GRO-seq H1-hESC-RPMI


text: live

text: Generic

text: Santa Cruz 32323-ac

text: H1 embryonic stem cells

text: BrdU

characteristic: chip antibody

text: Activin

text: TCGTATGCCGTCTTCTGCTTG

text: Homo sapiens

text: GRO-seq H1-hESC-1hr-Activin


text: live

text: Generic

text: Santa Cruz 32323-ac

text: H1 embryonic stem cells

text: BrdU

characteristic: drug concentration

text: Activin

text: TCGTATGCCGTCTTCTGCTTG

text: Homo sapiens

text: GRO-seq H1-hESC-48hr-Activin


text: Institute for Genetics, Justus-Liebig-University Giessen

text: live

text: Generic

text: HeLa

text: Homo sapiens

text: HeLa

characteristic: transfected construct


Bacillus pumilus BA06

text: Hong Feng

text: live

text: Generic

text: China: Chengdu

characteristic: geo loc name

text: Isolated from proteinaceous soil

characteristic: isolate

text: soil

characteristic: isolation-source

text: Bacillus pumilus BA06

characteristic: strain

text: General Sample for Bacillus pumilus BA06


Chorr A

characteristic: External Id

text: Florida State University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: The venom-gland transcriptome of a type A timber rattlesnake (Crotalus horridus) from northern Florida. The gland was removed four days after venom extraction under anesthesia.

characteristic: description

text: Crotalus horridus

text: Type A Crotalus horridus venom-gland transcriptome


text: Genome Research Foundation

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

characteristic: organism


Sample 1

text: Weizmann Institute of Science

characteristic: INSDC first public

text: live

text: Generic

text: Solanum lycopersicum

text: SmallRNA from wild type tomato apices (s_1_sequence)

characteristic: title


text: Weizmann Institute of Science

text: live

text: Generic

text: Solanum lycopersicum

text: SmallRNA from tomato dcl4 mutant apices (s_2_sequence)


Sample 3

text: Weizmann Institute of Science

text: live

text: Generic

text: Solanum lycopersicum

text: SmallRNA from tomato ago7 mutant apices (s_3_sequence)


Sample 4

text: Weizmann Institute of Science

text: live

text: Generic

text: Solanum lycopersicum

text: SmallRNA from tomato rdr6 mutant apices


tiger puffer/Takifugu rubripes

text: Institue of Oceanology,Chinese Academy of Sciences

text: live

text: Generic

text: Takifugu rubripes

text: tiger puffer/Takifugu rubripes transcriptome


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: soil metagenome


tawny puffer/Takifugu flavidus

text: live

text: Generic

text: about five months old, sampled from Hebei Institute of Fisheries, China

text: Takifugu flavidus

text: tawny puffer/Takifugu flavidus


text: International Institute of Molecular and Cell Biology

text: live

text: Generic

text: Escherichia coli

text: bisulfite converted

characteristic: protocol

text: genomic DNA

text: Escherichia coli control


text: live

text: Generic

text: Escherichia coli

text: bisulfite converted

text: genomic DNA

text: Escherichia coli M.MpeI methylated in vitro methylated genomic DNA


OORC

text: Baylor College of Medicine

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Orcinus orca

text: Orcinus orca

text: blood

characteristic: source of DNA

text: Sample from Orcinus orca


text: Baylor College of Medicine

text: live

text: Generic

text: Generic

characteristic: collection date

text: Orcinus orca

text: Morgan

characteristic: isolate

text: Norwegian herring-eating population

characteristic: note orgmod

text: Orcinus orca

text: female

characteristic: sex

text: blood

text: Generic sample from Orcinus orca


characteristic: External Id

text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: LabPH

text: Generic

text: Generic

text: yes

characteristic: hiv

text: human metagenome

characteristic: patient

text: no

characteristic: pid

text: African American

characteristic: race

text: human metagenome 254498

characteristic: visit


name: Lupulin glands from Taurus (Mainburg, Germany collection)

text: National Research Council of Canada

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Lupulin glands were isolated from mature female inflorescences (cones) of the high-alpha acid hop cultivar 'Taurus' collected in Mainburg, Germany in August 2005. Glands were removed from dissected cone bracts and bracteoles by stirring in liquid nitrogen, followed by filtration through a 1 mm mesh screen to remove cone materials.

characteristic: description

text: Humulus lupulus

characteristic: organism

text: Hop lupulin glands from Taurus (Mainburg, Germany collection)

characteristic: title


Bel

characteristic: External Id

text: Cleveland Clinic Foundation

characteristic: INSDC last update

text: live

text: Generic

text: Plasmodium vivax belem strain from infected monkey

text: Plasmodium vivax strain Belem

text: Plasmodium vivax monkey adapted belem strain


Sal-I

text: Cleveland Clinic Foundation

characteristic: INSDC secondary accession

text: live

text: Generic

text: Plasmodium vivax Sal-I sample for re-sequencing

text: Plasmodium vivax Sal-1

text: Plasmodium vivax Sal-I resequencing


Trichome - Taurus, Saskatoon

text: National Research Council of Canada

text: live

text: Generic

text: Lupulin glands were isolated from mature female inflorescences (cones) of the high-alpha acid hop cultivar 'Taurus' collected in Saskatoon, Germany in September 2011. Glands were removed from dissected cone bracts and bracteoles by stirring in liquid nitrogen, followed by filtration through a 1 mm mesh screen to remove cone materials.

text: Humulus lupulus

text: Hop lupulin glands from Taurus (Saskatoon, Canada collection)


Trichome - Apollo, Yakima

text: National Research Council of Canada

text: live

text: Generic

text: Lupulin glands were isolated from mature female inflorescences (cones) of the high-alpha acid hop cultivar 'Apollo' collected in Yakima, USA in August 2009. Glands were removed from dissected cone bracts and bracteoles by stirring in liquid nitrogen, followed by filtration through a 1 mm mesh screen to remove cone materials.

text: Humulus lupulus

text: Hop lupulin glands from Apollo (Yakima, USA collection)


Trichome - Nugget, Mainburg

text: National Research Council of Canada

text: live

text: Generic

text: Lupulin glands were isolated from mature female inflorescences (cones) of the high-alpha acid hop cultivar 'Nugget' collected in Mainburg, Germany in August 2005. Glands were removed from dissected cone bracts and bracteoles by stirring in liquid nitrogen, followed by filtration through a 1 mm mesh screen to remove cone materials.

text: Humulus lupulus

text: Hop lupulin glands from Nugget (Mainburg, Germany collection)


Trichome - Magnum, Mainburg

text: National Research Council of Canada

text: live

text: Generic

text: Lupulin glands were isolated from mature female inflorescences (cones) of the high-alpha acid hop cultivar 'Magnum' collected in Mainburg, Germany in August 2005. Glands were removed from dissected cone bracts and bracteoles by stirring in liquid nitrogen, followed by filtration through a 1 mm mesh screen to remove cone materials.

text: Humulus lupulus

text: Hop lupulin glands from Magnum (Mainburg, Germany collection)


Cone - Taurus, Mainburg

text: National Research Council of Canada

text: live

text: Generic

text: Lupulin glands were removed from mature female inflorescences (cones) of the high-alpha acid hop cultivar 'Taurus' collected in Mainburg, Germany in August 2005. Glands were removed from dissected cone bracts and bracteoles by stirring in liquid nitrogen, followed by filtration through a 1 mm mesh screen to remove lupulin glands.

text: Humulus lupulus

text: Hop cone with lupulin glands removed fromTaurus (Mainburg, Germany collection)


Cone - Taurus, Saskatoon

text: National Research Council of Canada

text: live

text: Generic

text: Lupulin glands were isolated from mature female inflorescences (cones) of the high-alpha acid hop cultivar 'Taurus' collected in Saskatoon, Canada in September 2011. Glands were removed from dissected cone bracts and bracteoles by stirring in liquid nitrogen, followed by filtration through a 1 mm mesh screen to remove lupulin glands.

text: Humulus lupulus

text: Hop cone with lupulin glands removed from Taurus (Saskaoton, Canada collection)


Cone - Apollo, Yakima

text: National Research Council of Canada

text: live

text: Generic

text: Lupulin glands were isolated from mature female inflorescences (cones) of the high-alpha acid hop cultivar 'Apollo' collected in Yakima, USA in September 2011. Glands were removed from dissected cone bracts and bracteoles by stirring in liquid nitrogen, followed by filtration through a 1 mm mesh screen to remove lupulin glands.

text: Humulus lupulus

text: Hop cone with lupulin glands removed from Apollo (Yakima, USA collection


Leaf - Taurus, Mainburg

text: National Research Council of Canada

text: live

text: Generic

text: Leaves of the high-alpha acid hop cultivar 'Taurus' collected in Mainburg, Germany in August 2005.

text: Humulus lupulus

text: Hop leaves from Taurus (Mainburg, Germany collection)


Leaf - Taurus, Saskatoon

text: National Research Council of Canada

text: live

text: Generic

text: Leaves of the high-alpha acid hop cultivar 'Taurus' collected in Saskatoon, Canada in August 2011.

text: Humulus lupulus

text: Hop leaves from Taurus (Saskatoon, Canada collection)


Leaf - Apollo, Yakima

text: National Research Council of Canada

text: live

text: Generic

text: Leaves of the high-alpha acid hop cultivar 'Apollo' collected in Yakima, USA in August 2009.

text: Humulus lupulus

text: Hop leaves from Apollo (Yakima, USA collection)


text: ENCODE DCC

text: live

text: Generic

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: F

characteristic: cell sex

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05

text: Homo sapiens

characteristic: replicate

text: UT-A_ChipSeq_MCF-7_serum_starved_media_Pol2

characteristic: treatment

text: Grown with normal serum levels (10%), then switched to media containing low level of FBS (0.05%) for 72 hours

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: c-Myc

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

text: Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: organism

text: UT-A_ChipSeq_MCF-7_serum_starved_media_c-Myc

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: NICHD

characteristic: biomaterial provider

characteristic: cell

text: Primary frozen heart tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase), 1863 (Rep B1 FAIRE), 4548 (Rep B2 FAIRE)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: B

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: fseq v 1.84

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Input

text: NICHD ; NICHD ; NICHD ; NCTC ; NICHD

text: Primary frozen kidney tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase), 1863 (Rep B3 FAIRE) and NCTC donor ID 10-0022A (Rep B1 FAIRE)

text: normal

text: human

text: B

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: fseq v 1.84

characteristic: labversion

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

text: rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: Rabbit polyclonal. Antibody Target: CTCF

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Coriell

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_GM13977

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

text: CTCF

characteristic: antibody

text: Millipore

text: Coriell

characteristic: biomaterial provider

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_GM10266

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Input

characteristic: antibody description

text: NCTC

characteristic: cell

text: Primary frozen pancreas tissue from NCTC donor IDs 09-0144A (Rep B1) and 10-0021A (Rep B2)

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: M

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: fseq v 1.84

characteristic: labversion

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

text: NICHD

text: Primary frozen spleen tissue from NICHD donor IDs 1863 (Rep B1) and 4548 (Rep B2)

text: normal

text: human

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: fseq v 1.84

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

characteristic: antibody

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Coriell

characteristic: biomaterial provider

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_20000,p-value cutoff: 0.05

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: replicate


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: CTCF

text: Millipore

text: ATCC

text: M

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_LnCAP,p-value cutoff: 0.05

text: Homo sapiens

text: LNCaP


text: ENCODE DCC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

text: Millipore

text: ATCC

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05

text: Homo sapiens

characteristic: organism

text: UT-A_ChipSeq_MCF-7_serum_stimulated_media_CTCF

characteristic: title

characteristic: treatment

text: Grown with normal serum levels (10%), then switched back to normal serum levels (10% FBS) for 3 hours.

characteristic: treatment description


text: ENCODE DCC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: antibody

text: mouse monoclonal, clone 8WG16. Antibody Target: POL2

characteristic: antibody antibodydescription

text: RNA Polymerase II

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Covance

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: F

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: replicate

text: UT-A_ChipSeq_MCF-7_serum_stimulated_media_Pol2


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: c-Myc

text: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

text: Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC

text: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: F

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: Homo sapiens

text: UT-A_ChipSeq_MCF-7_serum_stimulated_media_c-Myc


text: ENCODE DCC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: rabbit polyclonal. Antibody Target: CTCF

text: Rabbit polyclonal. Antibody Target: CTCF

text: Millipore

text: ATCC

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: organism

text: UT-A_ChipSeq_MCF-7_serum_starved_media_CTCF

characteristic: title

characteristic: treatment

text: Grown with normal serum levels (10%), then switched to media containing low level of FBS (0.05%) for 72 hours

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

characteristic: antibody description

text: ATCC

characteristic: biomaterial provider

text: LNCaP

characteristic: cell

text: prostate adenocarcinoma, LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma. - ATCC. (Horoszewicz et al. LNCaP Model of Human Prostatic Carcinoma. Cancer Research 43, 1809-1818, April 1983.)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: endoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: fseq v 1.84

text: Homo sapiens

text: LNCaP


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Input

text: NICHD ; NICHD ; NICHD ; CF Center ; CF Center

text: Primary frozen lung tissue from NICHD donor IDs 1104 (Rep B1 DNase), 602 (Rep B2 DNase), 1442 (Rep B3 DNase) and CF Center donor IDs DD006I (Rep B1 FAIRE) and DD007I (Rep B2 FAIRE)

text: normal

text: human

text: B

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: fseq v 1.84

characteristic: labversion

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: CTCF

characteristic: antibody

characteristic: antibody antibodydescription

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: NCTC

characteristic: biomaterial provider

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1

text: fseq v 1.84, iff_Pancreas,baseAlignCounts.pl v 1,p-value cutoff: 0.05

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: CTCF

text: Millipore

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_Lung

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: CTCF

text: Millipore

text: NICHD

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1

characteristic: labversion

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_Spleen,p-value cutoff: 0.05

text: Homo sapiens


text: ENCODE DCC

text: live

text: Generic

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: Coriell

characteristic: cell

text: lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation

characteristic: cell description

text: affected

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: fseq v 1.84

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

characteristic: antibody antibodydescription

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Coriell

characteristic: biomaterial provider

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: fseq v 1.84, iff_GM13976,baseAlignCounts.pl v 1,p-value cutoff: 0.05

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF

characteristic: antibody

text: Millipore

text: NICHD ; NICHD ; NICHD ; NCTC ; NICHD

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_Kidney,p-value cutoff: 0.05

characteristic: labversion

text: baseAlignCounts.pl v 1

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

characteristic: antibody antibodydescription

text: Millipore

text: ATCC

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_LnCAP,p-value cutoff: 0.05

text: Homo sapiens

text: LNCaP

text: androgen

characteristic: treatment

text: 12 hrs with 1 nM Methyltrienolone (R1881) (Crawford)

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

text: Input

characteristic: antibody description

text: NCTC

characteristic: biomaterial provider

characteristic: cell

text: Primary frozen colon tissue from NCTC donor IDs 10-0005A (Rep B1) and 10-0170A (Rep B2), African American and caucasian

characteristic: cell description

text: normal

characteristic: cell karyotype

text: human

characteristic: cell organism

text: B

text: ChipSeq

text: Chromatin IP Sequencing

text: fseq v 1.84

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Coriell

text: lymphoblastoid cell line, Clinically affected; microcephaly; low frontal hairline; synophris; penciled arched eyebrows; short nose; crescent shaped mouth; hirsutism; micromelia; short thumbs; mental retardation; clinically normal monozygotic twin sister is GM13976

text: affected

text: mesoderm

characteristic: cell lineage

text: human

text: F

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: fseq v 1.84

characteristic: labversion

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Input

characteristic: antibody description

text: Coriell

characteristic: biomaterial provider

characteristic: cell

text: lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation; seizures; 3 cousins are also affected; 46,XY,-22,+der (22)t(3;22)(q25.3;p12)

text: affected

text: mesoderm

text: human

text: M

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: fseq v 1.84

text: Homo sapiens


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: CTCF

text: rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody antibodydescription

text: Rabbit polyclonal. Antibody Target: CTCF

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: Coriell

text: M

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1,fseq v 1.84, iff_GM10248,p-value cutoff: 0.05

text: baseAlignCounts.pl v 1

text: Homo sapiens

characteristic: organism

characteristic: replicate

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

text: Control signal which may be subtracted from experimental raw signal before peaks are called.

text: Dr. Darrell Bigner at Duke University Medical Center

text: Medullo

text: medulloblastoma (aka D721), surgical resection from a patient with medulloblastoma as described by Darrell Bigner (1997)

characteristic: cell description

text: cancer

characteristic: cell karyotype

text: ectoderm

characteristic: cell lineage

text: human

characteristic: cell organism

text: U

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: fseq v 1.84

characteristic: labversion

text: Homo sapiens

text: Medullo


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: CTCF

characteristic: antibody antibodydescription

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

characteristic: biomaterial provider

text: U

characteristic: cell sex

text: ChipSeq

text: Chromatin IP Sequencing

text: baseAlignCounts.pl v 1

text: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_D721

text: Homo sapiens

text: Medullo


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Input

characteristic: antibody

characteristic: antibody description

text: Coriell

characteristic: cell

text: lymphoblastoid cell line, clinically normal; monozygotic twin sister with Cornelia De Lange syndrome is GM13977

characteristic: cell description

text: normal

characteristic: cell karyotype

text: mesoderm

characteristic: cell lineage

text: human

text: F

text: ChipSeq

text: Chromatin IP Sequencing

text: fseq v 1.84

text: Homo sapiens

characteristic: organism

characteristic: title


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Input

text: Coriell

text: lymphoblastoid cell line, Clinically normal; 4 paternal cousins have Cornelia de Lange syndrome; 46,XY, t(3;22)(q25.3;p12)

text: normal

text: mesoderm

text: human

characteristic: cell organism

text: M

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

text: fseq v 1.84

characteristic: labversion

text: Homo sapiens


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: RnaPet

text: RNA Paired-End Tags

characteristic: labexpid

text: clone-free

text: cell

characteristic: localization

text: Whole cell

characteristic: localization description

text: Homo sapiens

characteristic: readtype

text: Paired 36 nt reads

characteristic: readtype description

characteristic: replicate

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ATCC

text: RnaPet

characteristic: datatype

text: RNA Paired-End Tags

text: clone-free

text: nucleus

text: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA

text: Homo sapiens

characteristic: organism

text: Paired 36 nt reads

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: RnaPet

text: RNA Paired-End Tags

characteristic: datatype description

text: clone-free

characteristic: labversion

text: cytosol

text: The fluid between the cells outer membrane and the nucleus

text: Homo sapiens

text: Paired 36 nt reads

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt


text: ENCODE DCC

text: live

text: Generic

text: ATCC

text: RnaPet

text: RNA Paired-End Tags

characteristic: labexpid

text: iIDR,clone-free

text: iIDR

text: cell

characteristic: localization

text: Whole cell

characteristic: localization description

text: Homo sapiens

characteristic: readtype

text: Paired 36 nt reads

characteristic: readtype description

characteristic: replicate

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ATCC

text: RnaPet

characteristic: datatype

text: RNA Paired-End Tags

text: clone-free

text: nucleus

text: Homo sapiens

characteristic: organism

text: Paired 36 nt reads

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: SK-N-SH

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: ATCC

characteristic: biomaterial provider

characteristic: biorep

text: RnaPet

text: RNA Paired-End Tags

characteristic: datatype description

text: clone-free

characteristic: labversion

text: cytosol

text: Homo sapiens

text: Paired 36 nt reads

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: SK-N-SH


text: ENCODE DCC

text: live

text: Generic

text: ATCC

text: RnaPet

text: RNA Paired-End Tags

characteristic: labexpid

text: clone-free

text: cell

characteristic: localization

text: Whole cell

characteristic: localization description

text: Homo sapiens

characteristic: readtype

text: Paired 36 nt reads

characteristic: readtype description

characteristic: replicate

text: longPolyA

characteristic: rnaextract

text: Poly(A)+ RNA longer than 200 nt

characteristic: rnaextract description

text: SK-N-SH


text: ENCODE DCC

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: ATCC

text: F

characteristic: cell sex

text: RnaPet

characteristic: datatype

text: RNA Paired-End Tags

text: clone-free

text: nucleus

text: Homo sapiens

characteristic: organism

text: Paired 36 nt reads

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

characteristic: title


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Lonza

characteristic: biomaterial provider

characteristic: biorep

text: U

text: RnaPet

text: RNA Paired-End Tags

characteristic: datatype description

characteristic: labexpid

text: clone-free

characteristic: labversion

text: cytosol

text: Homo sapiens

text: Paired 36 nt reads

text: longPolyA

text: Poly(A)+ RNA longer than 200 nt

text: HUVEC


Temperature

text: GEOMAR, Kiel, Germany

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: marine

characteristic: biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:5.0

characteristic: description

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: env package

text: marine

characteristic: feature

text: Germany: Kiel Bight, Western Baltic

characteristic: geo loc name

text: metagenome

characteristic: investigation type

text: 54.45 N 10.18 E

characteristic: lat lon

text: algal tissue

characteristic: material

text: epibiont metagenome

text: Analysis of epibacterial community on brown macroalgae

characteristic: project name

text: brown alga Fucus vesiculosus

characteristic: specific host

text: MIMS Environmental/Metagenome sample from Fucus vesiculosus


characteristic: External Id

text: Genome Research Foundation

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

characteristic: organism

characteristic: title


Larval sample#1/2

text: Ben-Gurion University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Macrobracium rosenbergii larval and post-larval whole organism samples were processed for transcriptome sequencing using Illumina HiSeq2000. Many transcripts were found to be differentially expressed between these developmental stages. This sample represents transcripts from the transcriptome of 1/2 larval samples.

characteristic: description

text: Macrobrachium rosenbergii

text: Larval sample#1/2


Larval sample#2/2

text: Ben-Gurion University

text: live

text: Generic

text: Macrobracium rosenbergii larval and post-larval whole organism samples were processed for transcriptome sequencing using Illumina HiSeq2000. Many transcripts were found to be differentially expressed between these developmental stages. This sample represents transcripts from the transcriptome of 2/2 larval samples.

text: Macrobrachium rosenbergii

text: Larval sample#2/2


Post-larval sample#1/2

text: Ben-Gurion University

text: live

text: Generic

text: Macrobracium rosenbergii larval and post-larval whole organism samples were processed for transcriptome sequencing using Illumina HiSeq2000. Many transcripts were found to be differentially expressed between these developmental stages. This sample represents transcripts from the transcriptome of 1/2 post-larval samples.

text: Macrobrachium rosenbergii

text: Post-larval sample#1/2


Post-larval sample#2/2

text: Ben-Gurion University

text: live

text: Generic

text: Macrobracium rosenbergii larval and post-larval whole organism samples were processed for transcriptome sequencing using Illumina HiSeq2000. Many transcripts were found to be differentially expressed between these developmental stages. This sample represents transcripts from the transcriptome of 2/2 post-larval samples.

text: Macrobrachium rosenbergii

text: Post-larval sample#2/2


Normalized larval sample#1/2

text: Ben-Gurion University

text: live

text: Generic

text: Macrobracium rosenbergii larval and post-larval whole organism samples were processed for transcriptome sequencing using Illumina HiSeq2000. Many transcripts were found to be differentially expressed between these developmental stages. This sample represents transcripts from the transcriptome of 1/2 larval samples, that were normalized enzymatically prior to sequencing.

text: Macrobrachium rosenbergii

text: Normalized larval sample#1/2


Normalized larval sample#2/2

text: Ben-Gurion University

text: live

text: Generic

text: Macrobracium rosenbergii larval and post-larval whole organism samples were processed for transcriptome sequencing using Illumina HiSeq2000. Many transcripts were found to be differentially expressed between these developmental stages. This sample represents transcripts from the transcriptome of 2/2 larval samples, that were normalized enzymatically prior to sequencing.

text: Macrobrachium rosenbergii

text: Normalized larval sample#2/2


Normalized post-larval sample#1/2

text: Ben-Gurion University

text: live

text: Generic

text: Macrobracium rosenbergii larval and post-larval whole organism samples were processed for transcriptome sequencing using Illumina HiSeq2000. Many transcripts were found to be differentially expressed between these developmental stages. This sample represents transcripts from the transcriptome of 1/2 post-larval samples, that were normalized enzymatically prior to sequencing.

text: Macrobrachium rosenbergii

text: Normalized post-larval sample#1/2


Normalized post-larval sample#2/2

text: Ben-Gurion University

text: live

text: Generic

text: Macrobracium rosenbergii larval and post-larval whole organism samples were processed for transcriptome sequencing using Illumina HiSeq2000. Many transcripts were found to be differentially expressed between these developmental stages. This sample represents transcripts from the transcriptome of 2/2 post-larval samples, that were normalized enzymatically prior to sequencing.

text: Macrobrachium rosenbergii

text: Normalized post-larval sample#2/2


HNI

text: University of Tokyo, Graduate School of Frontier Science, Dept. of Computational Biology

text: live

text: Generic

text: Oryzias latipes

text: Medaka (Oryzias latipes) HNI strain


HSOK

text: live

text: Generic

text: Oryzias latipes

text: Medaka (Oryzias latipes) HSOK strain


Transcriptome of the Chilo suppressalis

text: Zhejiang university

text: live

text: Generic

text: The Chilo suppressalis strain was collected from the farm at the Fuyang, Hangzhou, Zhejiang, China in 2011. This strain was reared in plastic containers (15 cm diameter * 8 cm high) on an artificial diet at 28 * 1 *C under a 16 h photoperiod and > 80% relative humidity.

text: Chilo suppressalis

text: Transcriptome of the rice stem borer Chilo suppressalis


Hd-rR blastula

text: live

text: Generic

text: Oryzias latipes

text: Hd-rR blastula


Hd-rR testis

text: live

text: Generic

text: Oryzias latipes

text: Hd-rR testis


HNI blastula

text: live

text: Generic

text: Oryzias latipes

text: HNI blastula


HNI testis

text: live

text: Generic

text: Oryzias latipes

text: HNI testis


text: Beijing Genome Institute

text: live

text: Generic

text: Glycine max

text: Sample from Glycine max


text: Weizmann Institute of Science

text: live

text: Generic

characteristic: antibody

text: Diagenode

characteristic: antibody manufacturer

characteristic: cell line

text: WI-38 primary human lung fibroblasts

characteristic: cell type

text: Homo sapiens

characteristic: passage

text: WI-38 cell culture

text: MeDIP seq 19


characteristic: External Id

text: Weizmann Institute of Science

text: live

text: Generic

text: Diagenode

text: hTERT-immortalized WI-38 primary human lung fibroblasts

text: Homo sapiens

text: WI-38 cell culture

text: MeDIP seq A39


text: Weizmann Institute of Science

characteristic: INSDC center name

text: live

text: Generic

text: Diagenode

text: Homo sapiens

text: WI-38 cell culture

text: MeDIP seq A50


text: Weizmann Institute of Science

characteristic: INSDC secondary accession

text: live

text: Generic

text: Diagenode

text: Homo sapiens

text: WI-38 cell culture

text: MeDIP seq A58


text: Weizmann Institute of Science

text: live

characteristic: INSDC status

text: Generic

text: Diagenode

text: Homo sapiens

text: WI-38 cell culture

text: MeDIP seq A67


text: Weizmann Institute of Science

text: live

text: Generic

characteristic: NCBI submission model

text: Diagenode

text: Homo sapiens

text: WI-38 cell culture

text: MeDIP seq A95


text: Weizmann Institute of Science

text: live

text: Generic

characteristic: NCBI submission package

text: Diagenode

text: Homo sapiens

text: WI-38 cell culture

text: MeDIP seq B96


text: Weizmann Institute of Science

text: live

text: Generic

characteristic: SRA accession

text: Diagenode

text: Homo sapiens

text: WI-38 cell culture

text: MeDIP seq mSssI


text: Weizmann Institute of Science

text: live

text: Generic

text: Millipore

text: WI-38 primary human lung fibroblasts

text: Homo sapiens

characteristic: organism

text: WI-38 cell culture

text: ChIP seq H3K27me3 19


text: Weizmann Institute of Science

text: live

text: Generic

text: Millipore

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq H3K27me3 A39

characteristic: title


text: Weizmann Institute of Science

characteristic: INSDC first public

text: live

text: Generic

text: Millipore

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq H3K27me3 A50


text: Weizmann Institute of Science

characteristic: INSDC last update

text: live

text: Generic

text: Millipore

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq H3K27me3 A58


text: Weizmann Institute of Science

text: live

text: Generic

text: Millipore

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq H3K27me3 A67


text: Weizmann Institute of Science

text: live

text: Generic

text: Millipore

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq H3K27me3 A95


text: Weizmann Institute of Science

text: live

text: Generic

text: Millipore

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq H3K27me3 B96


text: Weizmann Institute of Science

text: live

text: Generic

text: Abcam

text: WI-38 primary human lung fibroblasts

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq H3K4me3 19


text: Weizmann Institute of Science

text: live

text: Generic

text: Abcam

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq H3K4me3 A95


text: Weizmann Institute of Science

text: live

text: Generic

text: CTCF

text: Millipore

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq CTCF A39


text: Weizmann Institute of Science

text: live

text: Generic

text: CTCF

text: Millipore

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq CTCF A95


text: Weizmann Institute of Science

text: live

text: Generic

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq Input A39


text: Weizmann Institute of Science

text: live

text: Generic

text: Homo sapiens

text: WI-38 cell culture

text: ChIP seq Input A95


text: Miska, Wellcome Trust/Cancer Research UK Gurdon Institute, The Henry We, University of Cambridge

text: live

text: Generic

text: Orsay virus infection

characteristic: infection status

text: Caenorhabditis elegans

text: C.elegans whole animal, mixed stage

text: N2 Bristol

characteristic: strain


text: live

text: Generic

text: Caenorhabditis elegans

text: C.elegans whole animal, mixed stage

text: N2 Bristol


text: live

text: Generic

text: Orsay virus infection

text: Caenorhabditis elegans

text: C.elegans whole animal, mixed stage


text: live

text: Generic

text: Caenorhabditis elegans

text: C.elegans whole animal, mixed stage


text: Princeton University

text: live

text: Generic

text: anti-IgG (mouse) Santa Cruz Biotechnology, CAT# sc-2025, lot C1111

characteristic: antibody

text: Oxytricha trifallax

text: Vegetative IgG

text: vegetative cells

characteristic: stage

text: Vegetative IgG DIP-seq


text: Princeton University

text: live

text: Generic

text: anti-methylcytosine (mouse) Eurogentec, CAT# BI-MECY-0100

text: Oxytricha trifallax

text: Vegetative mC

text: vegetative cells

text: Vegetative mC DIP-seq


text: Princeton University

text: live

text: Generic

text: anti-hydroxymethylcytosine (Rabbit) Active Motif, CAT# 39791, lot# 13611004

text: Oxytricha trifallax

text: Vegetative hmC

text: vegetative cells

text: Vegetative hmC DIP-seq


text: Princeton University

text: live

text: Generic

text: Oxytricha trifallax

text: 46h IgG

text: conjugating cells

text: 46h IgG DIP-seq


text: Princeton University

text: live

text: Generic

text: Oxytricha trifallax

text: 46h mC

text: conjugating cells

text: 46h mC DIP-seq


text: Princeton University

text: live

text: Generic

text: Oxytricha trifallax

text: 46h hmC

text: conjugating cells

text: 46h hmC DIP-seq


text: Molecular, Cell and Developmental Biology, University of California, Los Angeles

text: live

text: Generic

text: Williams 82

characteristic: cultivar

text: mid-maturation

characteristic: developmental stage

text: Glycine max

text: Soybean mid-maturation-stage seed coat

text: seed coat

characteristic: tissue

text: Mid-maturation-stage seed coat


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Williams 82

text: mid-maturation

text: Glycine max

text: Soybean mid- maturation-stage embryonic cotyledons

text: embyronic cotyledon

text: Mid-maturation-stage embryonic cotyledons


text: Butler lab, School of Biomolecular and Biomedical Science, University Colege Dublin Conway Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Myc-Tag (9B11) Mouse mAB

characteristic: chip antibody

text: Cell Signaling

characteristic: chip antibody vendor

text: log phase

characteristic: growth phase

text: Candida parapsilosis


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: log phase

text: Candida parapsilosis

characteristic: organism

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: wild type

characteristic: genotype/variation

text: log phase

text: Candida parapsilosis

text: concentric

characteristic: phenotype

text: wild type_concentric

characteristic: strain


characteristic: External Id

text: live

text: Generic

text: efg1 deletion

text: log phase

text: Candida parapsilosis

text: concentric

text: efg1 mutant_concentric


characteristic: INSDC center name

text: live

text: Generic

text: efg1 deletion

text: log phase

text: Candida parapsilosis

text: smooth

text: efg1 mutant_smooth


text: Baylor College of Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Odobenus rosmarus divergens

characteristic: description

text: Odobenus rosmarus divergens

text: blood

characteristic: source of DNA

text: Sample from Odobenus rosmarus divergens


Dysdercus fasciatus midgut microbiota

text: Max Planck Institue of Chemcial Ecology

text: live

characteristic: INSDC status

text: Generic

text: insect gut metagenome

text: Midgut microbiota of Dysdercus fasciatus by 454 amplicon pyrosequencing


text: live

text: Generic

characteristic: NCBI submission model

text: Williams 82

characteristic: cultivar

text: 6 days after imbibition

characteristic: developmental stage

text: Glycine max

text: Soybean seedling six days after imbibition

text: seedling

characteristic: tissue

text: Seedling biological replicate 1


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Williams 82

text: 6 days after imbibition

text: Glycine max

characteristic: organism

text: Soybean cotyledons of Seedling six days after imbibition

text: cotyledon from seedling

text: Cotyledon of seedling biological replicate 1

characteristic: title


text: Tokyo Medical & Dental University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: antibody

text: Wako

characteristic: antibody manufacturer

characteristic: cell line

text: Homo sapiens

text: 0 h

characteristic: time

text: HepG2 Ago2IP NT

text: NT

characteristic: treatment


characteristic: External Id

text: Tokyo Medical & Dental University

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: Wako

text: Homo sapiens

text: HepG2,miR-195,24h, Ago2-IP

text: 24 h

text: HepG2 Ago2IP miR-195


text: Tokyo Medical & Dental University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Wako

text: Homo sapiens

text: HepG2,miR-497,24h, Ago2-IP

text: 24 h

text: HepG2 Ago2IP miR-497


text: Tokyo Medical & Dental University

text: live

text: Generic

text: Homo sapiens

text: 0 h

text: HepG2 total RNA NT

text: NT


text: Tokyo Medical & Dental University

text: live

text: Generic

text: Homo sapiens

text: HepG2,miR-195,24h, totalRNA

text: 24 h

text: HepG2 total RNA miR-195


text: Tokyo Medical & Dental University

text: live

text: Generic

text: Homo sapiens

text: HepG2,miR-497,24h, totalRNA

text: 24 h

text: HepG2 total RNA miR-497


text: McGill University

text: live

text: MIMS.me

text: arctic

characteristic: biome

characteristic: collection date

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:5.0

characteristic: description

text: 20 m

characteristic: elev

characteristic: env package

text: tundra soil

characteristic: feature

text: Canada: site 1, Axel Heiburg, Nunavut

characteristic: geo loc name

text: metagenome

characteristic: investigation type

text: 79 N 90 W

characteristic: lat lon

text: soil

characteristic: material

text: soil metagenome

text: Replicate 1

characteristic: other

characteristic: ph

text: Analysis of Arctic soil samples that are untreated or treated with diesel and/or nutrients

characteristic: project name

text: MIMS Environmental/Metagenome sample from tundra soil metagenome


characteristic: External Id

text: McGill University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIMS.me

characteristic: NCBI submission package

characteristic: SRA accession

text: arctic

text: Keywords: GSC:MIxS;MIMS:5.0

text: 20 m

text: tundra soil

text: Canada: site 1, Axel Heiburg, Nunavut

text: metagenome

text: 79 N 90 W

text: soil

text: soil metagenome

characteristic: organism

text: Replicate 2

characteristic: title


text: McGill University

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: arctic

characteristic: biome

characteristic: collection date

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:5.0

characteristic: description

text: 20 m

characteristic: elev

characteristic: env package

text: tundra soil

characteristic: feature

text: Canada: site 1, Axel Heiburg, Nunavut

text: metagenome

text: 79 N 90 W

text: soil

text: soil metagenome

text: Replicate 3


characteristic: External Id

text: McGill University

characteristic: INSDC center name

text: live

text: MIMS.me

text: arctic

text: Keywords: GSC:MIxS;MIMS:5.0

text: 20 m

text: tundra soil

text: Canada: site 1, Axel Heiburg, Nunavut

characteristic: geo loc name

text: metagenome

characteristic: investigation type

text: 79 N 90 W

characteristic: lat lon

text: soil

characteristic: material

text: soil metagenome

text: Replicate 1

characteristic: other

characteristic: ph

characteristic: project name

text: Diesel added

characteristic: samp mat process


text: McGill University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: arctic

characteristic: biome

text: Keywords: GSC:MIxS;MIMS:5.0

text: 20 m

text: tundra soil

text: Canada: site 1, Axel Heiburg, Nunavut

text: metagenome

text: 79 N 90 W

text: soil

text: soil metagenome

characteristic: organism

text: Replicate 2

text: Diesel added

characteristic: title


characteristic: External Id

text: McGill University

characteristic: INSDC center name

text: live

text: MIMS.me

text: arctic

characteristic: collection date

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:5.0

characteristic: description

text: 20 m

characteristic: elev

characteristic: env package

text: tundra soil

characteristic: feature

text: Canada: site 1, Axel Heiburg, Nunavut

characteristic: geo loc name

text: metagenome

characteristic: investigation type

text: 79 N 90 W

text: soil

text: soil metagenome

text: Replicate 1

text: Diesel & monoammonium phosphate added


text: McGill University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

text: arctic

text: Keywords: GSC:MIxS;MIMS:5.0

text: 20 m

text: tundra soil

text: Canada: site 1, Axel Heiburg, Nunavut

text: metagenome

text: 79 N 90 W

characteristic: lat lon

text: soil

characteristic: material

text: soil metagenome

text: Replicate 2

characteristic: other

characteristic: ph

characteristic: project name

text: Diesel & monoammonium phosphate added

characteristic: samp mat process


characteristic: External Id

text: McGill University

characteristic: INSDC center name

text: live

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: arctic

characteristic: biome

characteristic: collection date

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:5.0

text: 20 m

text: tundra soil

text: Canada: site 1, Axel Heiburg, Nunavut

text: metagenome

text: 79 N 90 W

text: soil

text: soil metagenome

characteristic: organism

text: Replicate 3

text: Diesel & monoammonium phosphate added

characteristic: title


text: McGill University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

text: arctic

text: Keywords: GSC:MIxS;MIMS:5.0

characteristic: description

text: 20 m

characteristic: elev

characteristic: env package

text: tundra soil

characteristic: feature

text: Canada: site 2, Axel Heiburg, Nunavut

characteristic: geo loc name

text: metagenome

characteristic: investigation type

text: 79 N 90 W

text: soil

text: soil metagenome

text: Replicate 1


characteristic: External Id

text: McGill University

characteristic: INSDC center name

text: live

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

text: arctic

text: Keywords: GSC:MIxS;MIMS:5.0

text: 20 m

text: tundra soil

text: Canada: site 2, Axel Heiburg, Nunavut

text: metagenome

text: 79 N 90 W

characteristic: lat lon

text: soil

characteristic: material

text: soil metagenome

text: Replicate 2

characteristic: other

characteristic: ph

characteristic: project name


text: McGill University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIMS.me

characteristic: SRA accession

text: arctic

characteristic: biome

characteristic: collection date

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:5.0

text: 20 m

text: tundra soil

text: Canada: site 2, Axel Heiburg, Nunavut

text: metagenome

text: 79 N 90 W

text: soil

text: soil metagenome

characteristic: organism

text: Replicate 3

characteristic: title