text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Abcam

text: Mus musculus

text: Mm NP K36me3 b


status: PUBLIC

characteristic: External Id

text: Friedrich Miescher Institute for Biomedical Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Terminally differentiated Neurons (TN) derived from mouse embryonic stem cells

tag: attribute

characteristic: cell type

characteristic: chip antibody

text: Abcam

characteristic: chip antibody manufacturer

text: Mus musculus

characteristic: organism

characteristic: strain

text: Mm TN K36me3 a

characteristic: title


text: live

text: Generic

text: Abcam

text: Mus musculus

text: Mm TN K36me3 b


text: Rubin / Pennacchio, Genomics Division, Lawrence Berkeley National Laboratory

text: live

text: Generic

text: 4771/lot 2

characteristic: catalog/batch number

text: anti-acetyl-CBP/p300 (rabbit polyclonal)

text: Cell signaling technology

characteristic: chip antibody vendor

text: adult (45yr)

characteristic: developmental stage

text: male

characteristic: gender

text: Homo sapiens

text: heart

characteristic: tissue


characteristic: External Id

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 4771/lot 2

text: Cell signaling technology

text: fetus (gestational week 16)

text: Homo sapiens

text: heart


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: ab817/lot 639746

text: anti-RNA polymerase II (mouse monoclonal)

text: Abcam

text: fetus (gestational week 16)

text: Homo sapiens

text: heart


text: live

text: Generic

characteristic: SRA accession

text: 4771/lot 2

characteristic: chip antibody

text: Cell signaling technology

text: postnatal day 2

text: mixed

text: Mus musculus

text: heart


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Vibrio cholerae HC-50A2

characteristic: organism

characteristic: strain

text: Vibrio cholerae HC-50A2


text: live

text: Generic

text: Vibrio cholerae CP1033(6)

text: Vibrio cholerae CP1033(6)

characteristic: title


text: John Lis, Molecular Biology and Genetics, Cornell University

text: live

text: Generic

text: Anti-FLAG M2

characteristic: antibody

text: immunoprecipitation

characteristic: library selection

text: naked, sheared genomic Drosophila S2 DNA

characteristic: library source

text: PB-Seq

characteristic: library strategy

text: Drosophila melanogaster

text: HSF IP


characteristic: External Id

text: live

text: Generic

text: Anti-FLAG M2

text: immunoprecipitation

text: PB-Seq

text: Drosophila melanogaster

text: mock IP (no HSF)


text: live

characteristic: INSDC status

text: Generic

text: Vibrio cholerae CP1035(8)

text: Vibrio cholerae CP1035


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

characteristic: NCBI submission model

text: Spirochaeta africana DSM 8902

characteristic: description

text: Spirochaeta africana DSM 8902

characteristic: sample number

text: DSM 8902

text: Generic sample from Spirochaeta africana DSM 8902


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: Pseudomonas aeruginosa UCSF15-17

text: Pseudomonas aeruginosa UCSF15-17

text: Generic sample from Pseudomonas aeruginosa


text: J. Craig Venter Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Genomic DNA was obtained from axenic culture of strain HM3:IMSS from ATCC

text: Entamoeba histolytica HM-3:IMSS

text: Generic sample from Entamoeba histolytica HM-3:IMSS


text: live

text: Generic

text: Wisconsin, Restored Prairie soil metagenome reference core

text: soil metagenome

characteristic: organism

text: Generic sample from soil metagenome


catfish BAC

text: Auburn University Fish Molecular Genetic

text: live

text: Generic

text: Ictalurus punctatus

text: Pooled catfish BAC clones

characteristic: title


coalbed methane CRW

text: College of Resources and Environment, Graduate University of Chinese Academy of Sciences

text: live

text: Generic

text: Water, coal and rock samples were obtained from a coalbed methane reservoir in Ordos Basin in China to analyze the microbial communities associated with coalbed methane using 454 pyrosequencing and DGGE.

text: hydrocarbon metagenome

text: water, coal and rock samples related to coalbed methane


text: live

text: Generic

text: Iowa, Native Prairie soil metagenome reference core

text: soil metagenome

text: Generic sample from soil metagenome


Pooled immune tissue RNA-seq

text: The Walter and Eliza Hall Institute of Medical Research

text: live

text: Generic

text: Transcriptome of pooled immune tissues: unstimulated thymus and bone marrow, and mitogen stimulated spleen, whole blood and lymph node.

text: Pteropus alecto

text: Unstimulated thymus &amp; bone marrow, &amp; mitogen-stimulated spleen, whole blood and lymph node transcriptome


text: Internal Medicine, University of California, Davis

text: live

text: Generic

text: Abcam

characteristic: antibody vender

text: myotubes induced from wild type mouse fetal (E18.5) primary myoblasts

characteristic: cell type

characteristic: chip antibody

text: Mus musculus

characteristic: passages

text: primary myotubes

characteristic: strain


characteristic: External Id

text: live

characteristic: INSDC status

text: Generic

text: Abcam

text: Pol II

text: Mus musculus

text: primary myotubes


text: live

text: Generic

characteristic: NCBI submission model

text: Mus musculus

text: primary myotubes


text: Albert Einstein college of medicine

text: live

text: Generic

text: hiPSCs

characteristic: clone

text: Homo sapiens

text: hiPSCs

text: iPS1-C3 day 0


text: Albert Einstein college of medicine

characteristic: INSDC center name

text: live

text: Generic

text: hiPSCs-derived neurons

text: Homo sapiens

text: neurons

text: iPS1-C3 day 10


name: 1131298515005 Toxoplasma gondii RUB strain RUB-PE-ILI9-2 Sample

text: J. Craig Venter Institute

characteristic: INSDC first public

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii RUB strain tachyzoites

characteristic: description

text: Toxoplasma gondii RUB

text: Generic sample from Toxoplasma gondii RUB


name: 1131297450003 Toxoplasma gondii B41 strain TGB41-PE-ILI1-1 Sample

text: J. Craig Venter Institute

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: HMW total gDNA isolated from T. gondii B41 strain tachyzoites

text: Toxoplasma gondii B41

text: Generic sample from Toxoplasma gondii B41


name: 1131299939014 Toxoplasma gondii BRCTgH21016 strain BRCTGH21016-PE-ILI21-1 Sample

text: J. Craig Venter Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: HMW total gDNA isolated from T. gondii BRCTgH21016 strain tachyzoites

text: Toxoplasma gondii BRCTgH21016

text: Generic sample from Toxoplasma gondii BRCTgH21016


name: 1131298977038 Toxoplasma gondii GUY-2004-JAG1 strain GUY2004JAG1-PE-ILI52-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii GUY-2004-JAG1 strain tachyzoites

text: Toxoplasma gondii GUY-2004-JAG1

characteristic: organism

text: Generic sample from Toxoplasma gondii GUY-2004-JAG1

characteristic: title


name: 1131298515007 Toxoplasma gondii ARI strain TGARI-PE-ILI6-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii ARI strain tachyzoites

text: Toxoplasma gondii ARI

text: Generic sample from Toxoplasma gondii ARI


name: 1131302892501 Toxoplasma gondii BOF strain BOF-PE-ILI13-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii BOF strain tachyzoites

text: Toxoplasma gondii BOF

text: Generic sample from Toxoplasma gondii BOF


name: 1131302892505 Toxoplasma gondii TgCatBr15 strain TGCATBR15-PE-ILI53-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgCatBr15 strain tachyzoites

text: Toxoplasma gondii TgCatBr15

text: Generic sample from Toxoplasma gondii TgCatBr15


name: 1131302892509 Toxoplasma gondii TgCatBr26 strain TGCATBR26-PE-ILI11-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgCatBr26 strain tachyzoites

text: Toxoplasma gondii TgCatBr26

text: Generic sample from Toxoplasma gondii TgCatBr26


name: 1131301056001 Toxoplasma gondii TgCatBr9 strain TGCATBR9-PE-ILI12-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgCatBr9 strain tachyzoites

text: Toxoplasma gondii TgCATBr9

text: Generic sample from Toxoplasma gondii TgCATBr9


name: 1131298515015 Toxoplasma gondii GUY-DOS strain TGDOS-PE-ILI3-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii GUY-DOS strain tachyzoites

text: Toxoplasma gondii GUY-DOS

text: Generic sample from Toxoplasma gondii GUY-DOS


name: 1131298977040 Toxoplasma gondii GUY-MAT strain TGMAT-PE-ILI2-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii GUY-MAT strain tachyzoites

text: Toxoplasma gondii GUY-MAT

text: Generic sample from Toxoplasma gondii GUY-MAT


name: 1131301056003 Toxoplasma gondii TgCkCr10 strain TGCKCR10-PE-ILI23-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgCkCr10 strain tachyzoites

text: Toxoplasma gondii TgCkCr10

text: Generic sample from Toxoplasma gondii TgCkCr10


name: 1131298515009 Toxoplasma gondii TgCkGy2 strain TGCKGY2-PE-ILI12-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgCkGy2 strain tachyzoites

text: Toxoplasma gondii TgCkGy2

text: Generic sample from Toxoplasma gondii TgCkGy2


name: 1131298515011 Toxoplasma gondii COUG strain TGCOUG-PE-ILI5-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii COUG strain tachyzoites

text: Toxoplasma gondii COUG

text: Generic sample from Toxoplasma gondii COUG


name: 1131298515013 Toxoplasma gondii TgDogCo17 strain TGDGCO17-PE-ILI54-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgDogCo17 strain tachyzoites

text: Toxoplasma gondii TgDogCo17

text: Generic sample from Toxoplasma gondii TgDogCo17


name: 1131297450005 Toxoplasma gondii CAST strain TGCAST-PE-ILI20-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

characteristic: collection date

text: USA: CA

characteristic: country

text: HMW total gDNA isolated from T. gondii CAST strain tachyzoites

text: Homo sapiens

characteristic: nat-host

text: Toxoplasma gondii CAST

text: CAST

text: Generic sample from Toxoplasma gondii CAST


name: 1131297450007 Toxoplasma gondii CASTELLS strain TGCASTELLS-PE-ILI4-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii CASTELLS strain tachyzoites

text: Toxoplasma gondii CASTELLS

text: Generic sample from Toxoplasma gondii CASTELLS


name: 1131297450009 Toxoplasma gondii TgCatBr1 strain TGCATBR1-PE-ILI10-2 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgCatBr1 strain tachyzoites

text: Toxoplasma gondii TgCatBr1

text: Generic sample from Toxoplasma gondii TgCatBr1


name: 1131302892503 Toxoplasma gondii TgCatBr10 strain TGCATBR10-PE-ILI15-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgCatBr10 strain tachyzoites

text: Toxoplasma gondii TgCatBr10

text: Generic sample from Toxoplasma gondii TgCatBr10


name: 1131297450011 Toxoplasma gondii PRU strain TGPRU-PE-ILI22-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii PRU strain tachyzoites

text: Toxoplasma gondii PRU

text: Generic sample from Toxoplasma gondii PRU


name: 1131302892511 Toxoplasma gondii RAY strain TGRAY-PE-ILI2-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii RAY strain tachyzoites

text: Toxoplasma gondii RAY

text: Generic sample from Toxoplasma gondii RAY


name: 1131302892507 Toxoplasma gondii TgCatBr18 strain TGCATBR18-PE-ILI14-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgCatBr18 strain tachyzoites

text: Toxoplasma gondii TgCatBr18

text: Generic sample from Toxoplasma gondii TgCatBr18


name: 1131299939016 Toxoplasma gondii TgCatBr5 strain TGCATBR5-PE-ILI7-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgCatBr5 strain tachyzoites

text: Toxoplasma gondii TgCATBr5

text: Generic sample from Toxoplasma gondii TgCATBr5


name: 1131298515017 Toxoplasma gondii GUY-KOE strain TGKOE-PE-ILI1-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii GUY-KOE strain tachyzoites

text: Toxoplasma gondii GUY-KOE

text: Generic sample from Toxoplasma gondii GUY-KOE


name: 1131298977046 Toxoplasma gondii TgCatPRC3 strain TGPRE3-PE-ILI3-3 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgCatPRC3 strain tachyzoites

text: Toxoplasma gondii TgCatPRC3

text: Generic sample from Toxoplasma gondii TgCatPRC3


name: 1131301056005 Toxoplasma gondii GT1 strain TGONDGT1MRNA-PE-ILI4-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Illumina PE sequencing of total mRNA isolated from Toxoplasma gondii GT1 tachyzoites.

text: Toxoplasma gondii GT1

text: Generic sample from Toxoplasma gondii GT1


name: 1131301810009 Toxoplasma gondii ARI strain TGONDIARI-BP3KB-A2NB-1-464 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii ARI strain tachyzoites

text: Toxoplasma gondii ARI

text: Generic sample from Toxoplasma gondii ARI


name: 1131301810011 Toxoplasma gondii ARI strain TGONDIARI-P8KB-1-749 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Toxoplasma gondii ARI


name: 1131301810013 Toxoplasma gondii COUG strain TGONDICOUG-BP3KB-A1NB-1-456 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii COUG strain tachyzoites

text: Toxoplasma gondii COUG

text: Generic sample from Toxoplasma gondii COUG


name: 1131301810015 Toxoplasma gondii COUG strain TGONDICOUG-P8KB-1-944 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Toxoplasma gondii COUG


name: 1131301810017 Toxoplasma gondii TgCatBr5 strain TGCATBR5-P3KB-01-580 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Toxoplasma gondii TgCATBr5


name: 1131301810019 Toxoplasma gondii TgCatBr5 strain TGCATBR5-P8KB-01-528 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Toxoplasma gondii TgCATBr5


name: 1131301810021 Toxoplasma gondii TgCatBr9 strain TGCATBR9-P3KB-01-584 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: HMW total gDNA isolated from T. gondii TgCatBr9 strain tachyzoites

text: Toxoplasma gondii TgCATBr9

text: Generic sample from Toxoplasma gondii TgCATBr9


name: 1131301810023 Toxoplasma gondii TgCatBr9 strain TGCATBR9-P8KB-01-605 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Toxoplasma gondii TgCATBr9


text: The Medical Centre of Postgraduate Education

text: live

text: Generic

text: Pituitary

characteristic: organ

text: Homo sapiens

text: Homo sapiens pituitary cDNA library


characteristic: External Id

text: Northesast Forestry University

text: live

text: Generic

text: Betula platyphylla

text: Inflorescense

characteristic: tissue-type

text: Betula platyphylla Bplmme cDNA-AFLP


text: Northesast Forestry University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Betula platyphylla

text: Inflorescense

text: Betula platyphylla Bplmm cDNA-AFLP


text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Generic

text: The library was made from oligo(dT)-primed cDNA and cloned into vector pDNR-LIB (Clontech Laboratories, Inc., Mountain View, CA) using the SMART system (BD Biosciences, San Jose, CA). To generate the first strand, polyA RNA was primed with an oligo(dT) primer (5'-ATTCTAGAGGCCGAGGCGGCCGACATG(T)30 VN-3', where V = A, G, or C). The second strand was synthesized by PCR using primer 5'-AAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGG-3' followed by digestion of the SfiI sites. cDNA was size selected >2kb using 1.1% agarose gel electrophoresis, then ligated into pDNR-LIB. Library is normalized. Library was created and sequencing performed by the DOE Joint Genome Institute (Walnut Creek, CA).

text: DH10B TonA

characteristic: lab-host

text: Setaria italica

text: SfiI (A)

text: SfiI (B)

characteristic: strain

text: whole seedlings

text: CFBX Setaria italica Yugu1 whole seedlings

text: pDNR-LIB

characteristic: vector


text: DOE Joint Genome Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: description

text: DH10B TonA

text: Setaria italica

text: SfiI (A)

text: SfiI (B)

text: floral spike

text: CFGZ Setaria italica Yugu1 floral spike

text: pDNR-LIB


text: Ghent University

text: live

text: Generic

text: cell growth

characteristic: dev-stage

text: Micrasterias denticulata

characteristic: organism

text: Micrasterias denticulata cell growth

characteristic: title


text: Universite Claude Bernard Lyon 1

text: live

text: Generic

text: Marmeisse R, Debaud JC, Damon C

characteristic: collected-by

characteristic: collection-date

text: France: North East France Nievre-Morvan Breuil Chenue forest

characteristic: country

text: sandy clay soil from a Picea abies forest stand

characteristic: isolation-source

text: 47.18 N 4.4 E

characteristic: lat-lon

text: uncultured eukaryote

text: uncultured eukaryote library (Marmeisse R)


characteristic: External Id

text: Marine biotechnology Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: crab

text: Scylla paramamosain

text: hepatopancreas

characteristic: tissue-type

text: Scylla paramamosain hepatopancreas crab


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: CADM

text: Homo sapiens

text: Clinical Trial

characteristic: study design

text: DCEG Imputation Reference Dataset

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from a human participant in the dbGaP study DCEG Imputation Reference Dataset


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: DNA

text: EGC

text: Homo sapiens

characteristic: organism

text: Clinical Trial

text: DCEG Imputation Reference Dataset

characteristic: title


characteristic: External Id

text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: USDA Bee Lab, Tucson AZ, colony 100, dissected gut of ind.1

characteristic: description

text: gut metagenome

text: TCGCTacgggcggtgtgtRc

characteristic: primer

text: Generic sample from gut metagenome


characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

text: USDA Bee Lab, Tucson AZ, colony 100, dissected gut of ind.2

text: gut metagenome

text: TCGTGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 100, dissected gut of ind.3

text: gut metagenome

text: TCGACacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 100, dissected gut of ind.4

text: gut metagenome

text: TCAGTacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 100, dissected gut of ind.5

text: gut metagenome

text: TGCGCacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 107, dissected gut of ind.1

text: gut metagenome

text: TGCATacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 107, dissected gut of ind.2

text: gut metagenome

text: TGTGTacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 107, dissected gut of ind.3

text: gut metagenome

text: TGACTacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 107, dissected gut of ind.4

text: gut metagenome

text: TACTCacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 107, dissected gut of ind.5

text: gut metagenome

text: TATCTacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 109, dissected gut of ind.1

text: gut metagenome

text: TATACacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 109, dissected gut of ind.2

text: gut metagenome

text: CTCTGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 109, dissected gut of ind.3

text: gut metagenome

text: CTCATacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 109, dissected gut of ind.4

text: gut metagenome

text: CTGCGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 109, dissected gut of ind.5

text: gut metagenome

text: CTGTCacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 125, dissected gut of ind.1

text: gut metagenome

text: CGCTCacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 125, dissected gut of ind.2

text: gut metagenome

text: CGCGTacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 125, dissected gut of ind.3

text: gut metagenome

text: CGCAGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 125, dissected gut of ind.4

text: gut metagenome

text: CGTCTacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Tucson AZ, colony 125, dissected gut of ind.5

text: gut metagenome

text: CGACGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 19, dissected gut of ind.1

text: gut metagenome

text: CTACTacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 19, dissected gut of ind.2

text: gut metagenome

text: CTCGCacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 19, dissected gut of ind.3

text: gut metagenome

text: CGTACacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 19, dissected gut of ind.4

text: gut metagenome

text: TACGTacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 19, dissected gut of ind.5

text: gut metagenome

text: TAGAGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 216, dissected gut of ind.1

text: gut metagenome

text: TCATCacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 216, dissected gut of ind.2

text: gut metagenome

text: TCTATacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 216, dissected gut of ind.3

text: gut metagenome

text: TGCTGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 216, dissected gut of ind.4

text: gut metagenome

text: TGTAGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 216, dissected gut of ind.5

text: gut metagenome

text: ACGTCacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 299, dissected gut of ind.1

text: gut metagenome

text: ACACGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 299, dissected gut of ind.2

text: gut metagenome

text: AGTGTacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 299, dissected gut of ind.3

text: gut metagenome

text: AGCACacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 299, dissected gut of ind.4

text: gut metagenome

text: ATGCTacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 299, dissected gut of ind.5

text: gut metagenome

text: ATATGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 365, dissected gut of ind.1

text: gut metagenome

text: CATGCacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 365, dissected gut of ind.2

text: gut metagenome

text: CACAGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 365, dissected gut of ind.3

text: gut metagenome

text: CGATGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 365, dissected gut of ind.4

text: gut metagenome

text: TCTCGacgggcggtgtgtRc

text: Generic sample from gut metagenome


text: live

text: Generic

text: USDA Bee Lab, Beltsville, MD, colony 365, dissected gut of ind.5

text: gut metagenome

text: TCTGCacgggcggtgtgtRc

text: Generic sample from gut metagenome


high-throughtput sequencing

text: Inner Mongolia University

text: live

text: Generic

text: Reaumuria trigyna transcriptome sequencing and exploration of salt stress-related genes. Reaumuria trigyna is a xerophytic dicotyledonous plant specific to the Eastern Alxa-Western Ordos area of Inner Mongolia, China.

text: Reaumuria trigyna

text: Solexa Sequencing and Analysis of Reaumuria trigyna Transcriptomes


text: live

text: Generic

text: Clostridium thermocellum ATCC 27405

text: Acetivibrio thermocellus ATCC 27405

characteristic: sample number

text: ATCC 27405

characteristic: strain

text: Generic sample from Clostridium thermocellum ATCC 27405

text: type strain of Clostridium thermocellum

characteristic: type material


resource chemistry stream biofilm

text: University of Vienna

text: live

text: Generic

text: biofilm metagenome

text: Effects of resource chemistry on the composition and function of hyporheic stream biofilms


text: live

text: Generic

text: terrestrial

characteristic: env biome

text: Alaska

text: permafrost

text: USA:Alaska

text: Alaskan Permafrost

characteristic: isolation source

text: 69.373 N -152.441 W

characteristic: lat lon

text: soil metagenome

text: Permafrost metagenome PermafrostLayerDay2 library


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: terrestrial

text: Alaska

text: permafrost

text: USA:Alaska

text: Alaskan Permafrost

text: 69.373 N -152.441 W

text: soil metagenome

text: Permafrost metagenome PermafrostLayerDay0 library


characteristic: External Id

text: live

text: Generic

text: Permafrost metagenome ActiveLayerDay7

text: terrestrial

text: Alaska

text: permafrost

text: USA:Alaska

text: Alaskan Permafrost

text: 69.373 N -152.441 W

text: soil metagenome

characteristic: organism

text: Permafrost metagenome ActiveLayerDay7 library

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Permafrost metagenome ActiveLayerDay2

text: terrestrial

text: Alaska

text: permafrost

text: USA:Alaska

text: Alaskan Permafrost

text: 69.373 N -152.441 W

text: soil metagenome

text: Permafrost metagenome ActiveLayerDay2 library


text: Institute for Genomics and Systems Biology, University of Chicago

characteristic: INSDC center name

text: live

text: Generic

text: CNC

characteristic: antibody name

text: WPP

characteristic: developmental stage

text: White Lab

characteristic: manufacturer

text: Drosophila melanogaster

text: WPP

text: iso1 (y; bw cn sp)

text: CNC_ChIPSeq_1 and Seq2


text: live

text: Generic

characteristic: NCBI submission model

text: WPP

text: Drosophila melanogaster

text: WPP

text: iso1 (y; bw cn sp)

characteristic: strain


text: Institute for Cell and Molecular Biology, University of Texas at Austin

text: live

text: Generic

text: CTCF

characteristic: antibody

characteristic: cell line

text: breast adenocarcinoma cells

characteristic: cell type

text: Homo sapiens

text: breast adenocarcinoma cells


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: cMYC

text: breast adenocarcinoma cells

text: Homo sapiens

text: breast adenocarcinoma cells


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission package

text: breast adenocarcinoma cells

text: Homo sapiens

text: breast adenocarcinoma cells


text: live

text: Generic

text: INPUT

text: breast adenocarcinoma cells

text: Homo sapiens

characteristic: organism

text: breast adenocarcinoma cells

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: CTCF

text: Normal child fibroblasts

text: Homo sapiens

text: Normal child fibroblasts


characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: cMYC

text: Normal child fibroblasts

text: Homo sapiens

text: Normal child fibroblasts


text: live

text: Generic

text: INPUT

text: Normal child fibroblasts

text: Homo sapiens

text: Normal child fibroblasts


text: live

text: Generic

text: CTCF

text: Progeria fibroblast

text: Homo sapiens

text: Progeria fibroblast


text: live

text: Generic

text: cMYC

text: Progeria fibroblast

text: Homo sapiens

text: Progeria fibroblast


text: live

text: Generic

text: Progeria fibroblast

text: Homo sapiens

text: Progeria fibroblast


text: live

text: Generic

text: INPUT

text: Progeria fibroblast

text: Homo sapiens

text: Progeria fibroblast


text: live

text: Generic

text: CTCF

text: glioblastoma

text: Homo sapiens

text: glioblastoma


text: live

text: Generic

text: cMYC

text: glioblastoma

text: Homo sapiens

text: glioblastoma


text: live

text: Generic

text: glioblastoma

text: Homo sapiens

text: glioblastoma


text: live

text: Generic

text: INPUT

text: glioblastoma

text: Homo sapiens

text: glioblastoma


text: Bing Ren, Ludwig Institute for Cancer Research

text: live

text: Generic

text: fetal lung fibroblast

text: Homo sapiens

text: fetal lung fibroblast IMR90 cell line


text: live

text: Generic

text: pan anti-lysine acetylation antibody

text: fetal lung fibroblast

text: Homo sapiens

text: fetal lung fibroblast IMR90 cell line


text: live

text: Generic

text: pan anti-lysine crotonylation antibody

text: fetal lung fibroblast

text: Homo sapiens

text: fetal lung fibroblast IMR90 cell line


text: live

text: Generic

text: Spermatocyte

text: Mus musculus

text: Spermatocyte


text: live

text: Generic

text: pan anti-lysine acetylation antibody

text: Spermatocyte

text: Mus musculus

text: Spermatocyte


text: live

text: Generic

text: pan anti-lysine crotonylation antibody

text: Spermatocyte

text: Mus musculus

text: Spermatocyte


text: live

text: Generic

text: Round spermatids

text: Mus musculus

text: Round spermatids


text: live

text: Generic

text: pan anti-lysine acetylation antibody

text: Round spermatids

text: Mus musculus

text: Round spermatids


text: live

text: Generic

text: pan anti-lysine crotonylation antibody

text: Round spermatids

text: Mus musculus

text: Round spermatids


text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal. Antibody Target: H3K4me1

characteristic: antibody antibodydescription

text: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: abcam

characteristic: antibody vendorname

text: Abcam

text: ATCC

characteristic: biomaterial provider

text: immortalized cell line

characteristic: biomaterial type

text: hepatocellular carcinoma

characteristic: cell description

text: std

characteristic: control

text: Standard input signal for most experiments.

characteristic: control description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: line

text: Homo sapiens

characteristic: replicate

text: tier 1

characteristic: replicate description

characteristic: softwareversion

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: antibody antibodydescription

text: abcam

text: Abcam

text: ATCC

text: immortalized cell line

text: ectoderm

characteristic: cell lineage

text: std

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

text: tier 1

characteristic: title


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Permafrost metagenome ActiveLayerDay0

characteristic: description

text: terrestrial

characteristic: env biome

text: Alaska

text: permafrost

text: USA:Alaska

text: Alaskan Permafrost

characteristic: isolation source

text: 69.373 N -152.441 W

characteristic: lat lon

text: soil metagenome

characteristic: sample number

text: Permafrost metagenome ActiveLayerDay0 library


characteristic: External Id

text: UT Austin

characteristic: INSDC center name

text: live

text: Generic

text: HdT minus 1, clone A, day 150

text: Escherichia coli B str. REL606

characteristic: strain


text: UT Austin

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: LdT minus 1, clone A, day 150

text: Escherichia coli B str. REL606


text: UT Austin

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: HdT plus 1, clone B, day 150

text: Escherichia coli B str. REL606


text: UT Austin

text: live

text: Generic

characteristic: SRA accession

text: LdT plus 1, clone A, day 150

text: Escherichia coli B str. REL606


text: UT Austin

text: live

text: Generic

text: LdT minus 2, clone A, day 150

text: Escherichia coli B str. REL606

characteristic: organism


text: UT Austin

text: live

text: Generic

text: LdT minus 5, clone A, day 150

text: Escherichia coli B str. REL606

characteristic: title


text: UT Austin

text: live

text: Generic

text: LdT plus 4, clone A, day 150

characteristic: description

text: Escherichia coli B str. REL606


text: Rice Research Institute of Sichuan Agricultural University

text: live

text: Generic

text: 10 hour

characteristic: age

text: AG1 IA

characteristic: isolate

text: Rhizoctonia solani AG-1 IA

text: Mycelium

text: Mycelium incubated 10h


text: live

text: Generic

text: 18 hour

text: AG1 IA

text: Rhizoctonia solani AG-1 IA

text: Mycelium

text: Mycelium incubated 18h


text: live

text: Generic

text: 24 hour

text: AG1 IA

text: Rhizoctonia solani AG-1 IA

text: Mycelium

text: Mycelium incubated 24h


text: live

text: Generic

text: 32 hour

text: AG1 IA

text: Rhizoctonia solani AG-1 IA

text: Mycelium

text: Mycelium incubated 32h


text: live

text: Generic

text: 48 hour

text: AG1 IA

text: Rhizoctonia solani AG-1 IA

text: Mycelium

text: Mycelium incubated 48h


text: live

text: Generic

text: 72 hour

text: AG1 IA

text: Rhizoctonia solani AG-1 IA

text: Mycelium

text: Mycelium incubated 72h


text: Boston College

text: live

text: Generic

text: Saccharomyces cerevisiae S288C

text: Cerevisiae

text: S288c wt (FY4xFY5).

text: Cerevisiae Rep 1


text: Boston College

text: live

text: Generic

text: Saccharomyces cerevisiae S288C

text: Cerevisiae

text: S288c wt (FY4xFY5).

text: Cerevisiae Rep 2


text: Boston College

text: live

text: Generic

text: Saccharomyces paradoxus NRRL Y-17217

text: Paradoxus

text: Paradoxus Rep 1


text: Boston College

text: live

text: Generic

text: Saccharomyces paradoxus NRRL Y-17217

text: Paradoxus

text: Paradoxus Rep 2


text: Boston College

text: live

text: Generic

text: Saccharomyces mikatae IFO 1815

text: Mikatae

text: Mikatae Rep 1

text: type material of Saccharomyces mikatae

characteristic: type material


text: Boston College

text: live

text: Generic

text: Saccharomyces mikatae IFO 1815

text: Mikatae

text: Mikatae Rep 2

text: type material of Saccharomyces mikatae


text: National Institute of Allergy and Infectious Diseases

text: live

text: Generic

text: Staphylococcus aureus phage-type 80/81 clones

text: Staphylococcus aureus subsp. aureus MRSA252

text: Staphylococcus aureus


text: Wilhelmina Children's Hospital, University Medical Center Utrecht

text: live

text: Generic

text: rabbit polyclonal E2F7, Santa Cruz, sc-66870

characteristic: antibody

text: HeLa

characteristic: cell line

text: Homo sapiens

text: mid to late S-phase

characteristic: timepoint

text: E2F7 in HeLa cells run1 and run2


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: HeLa

text: Homo sapiens

text: Input HeLa cells

text: mid to late S-phase

text: Input HeLa cells


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Spirochaeta africana DSM 8902

text: Spirochaeta africana DSM 8902

text: DSM 8902

characteristic: strain

text: Generic sample from Spirochaeta africana DSM 8902


text: Genoscope - Centre National de Sequencage

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Pinot Noir, PN162

characteristic: cultivar

text: Vitis vinifera

text: leaves

characteristic: tissue-type

text: Vitis vinifera cv. Pinot Noir PN162 leaves cDNA library


text: live

text: Generic

characteristic: NCBI submission package

text: Cabernet Sauvignon

text: pool of CS2 suspension cells grown under normal and abiotic stress conditions (salt/water/hot/cold/anaerobic/hygromycine)

text: Vitis vinifera

characteristic: organism

text: CS2 cells

text: Vitis vinifera cv. Cabernet Sauvignon cDNA library

characteristic: title


text: COLD SPRING HARBOR LABORATORY

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: Germline


text: COLD SPRING HARBOR LABORATORY

text: live

text: Generic

text: Homo sapiens

text: tumor


text: Uppsala University-Dept. of Molecular Evolution

text: live

text: Generic

text: Isolated from a Grey Kangaroo (Macropus giganteus)

characteristic: description

text: Bartonella australis

text: Bartonella australis Aust/NH1


BBb

text: live

text: Generic

text: Isolated from a cow

text: Bartonella bovis

text: Bartonella bovis (Bermond) 91-4


text: live

text: Generic

text: Isolated from a wild moose (Alces alces)

text: Bartonella bovis

text: Bartonella bovis m02


text: live

text: Generic

text: Bartonella schoenbuchensis

text: Bartonella schoenbuchensis m07a


BVtw

text: live

text: Generic

text: Isolated from a dog (Canis lupus familiaris)

text: Bartonella vinsonii subsp. berkhoffii

text: Bartonella vinsonii Winnie


text: live

text: Generic

text: Bartonella vinsonii subsp. berkhoffii

text: Bartonella vinsonii Tweed


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Kansas, Native Prairie metagenome reference core

text: soil metagenome

characteristic: sample number

text: Generic sample from soil metagenome


text: live

text: Generic

text: Kansas, Cultivated corn soil metagenome reference core

text: soil metagenome

text: Generic sample from soil metagenome


text: live

text: Generic

text: Frankia sp. QA3

text: Frankia sp. QA3

text: Generic sample from Frankia sp. QA3


text: live

text: Generic

text: Oidiodendron maius Zn

text: Oidiodendron maius Zn

text: Zn

text: Generic sample from Oidiodendron maius Zn


text: Eawag

text: live

text: Generic

text: Activated sludge was amended with 0.1% E. coli that expresses the AtzA gene. RNA was then isolated, depleted of rRNA, and sequenced with Illumina sequencing.

text: wastewater metagenome

text: Activated sludge with 0.1% E. coli (vol/vol)


text: Eawag

text: live

text: Generic

text: Activated sludge was amended with 1% E. coli that expresses the AtzA gene. RNA was then isolated, depleted of rRNA, and sequenced with Illumina sequencing.

text: wastewater metagenome

text: Activated sludge with 1% E. coli (vol/vol)


text: Eawag

text: live

text: Generic

text: Activated sludge was amended with 2% E. coli that expresses the AtzA gene. RNA was then isolated, depleted of rRNA, and sequenced with Illumina sequencing.

text: wastewater metagenome

text: Activated sludge with 2% E. coli (vol/vol)


text: Eawag

text: live

text: Generic

text: Activated sludge was amended with 10% E. coli that expresses the AtzA gene. RNA was then isolated, depleted of rRNA, and sequenced with Illumina sequencing.

text: wastewater metagenome

text: Activated sludge with 10% E. coli (vol/vol)


text: Eawag

text: live

text: Generic

text: Activated sludge was amended with 50% E. coli that expresses the AtzA gene. RNA was then isolated, depleted of rRNA, and sequenced with Illumina sequencing.

text: wastewater metagenome

text: Activated sludge with 50% E. coli (vol/vol)


text: Eawag

text: live

text: Generic

text: RNA was isolated from E. coli that expresses the AtzA gene. The RNA was then depleted of rRNA and sequenced with Illumina sequencing.

text: wastewater metagenome

text: 100% E. coli (vol/vol)


text: McGill University

text: live

text: Generic

text: Homo sapiens

text: HCC1937 breast cancer cell line


text: McGill University

text: live

text: Generic

text: Homo sapiens

text: SUM149PT breast cancer cell line


text: McGill University

text: live

text: Generic

text: Homo sapiens

text: HCC3153 breast cancer cell line


text: McGill University

text: live

text: Generic

text: Homo sapiens

text: SUM1315O2 breast cancer cell line


text: McGill University

text: live

text: Generic

text: RNA sequencing was performed on HCC2337, a lymphocyte cell line derived from the same patient as HCC1937 breast cancer cell line.

text: Homo sapiens

text: HCC2337 lymphocyte cell line


text: McGill University

text: live

text: Generic

text: Homo sapiens

text: MCF10A non-tumorigenic breast epithelial cell line


name: Caenorhabditis elegans N2 early embryo EE_50-570 RNA library

text: University of Washington Genome Sciences

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-570 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 570 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-570 Local library name: N2_EE_50-570 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-600 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-600 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 600 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-600 Local library name: N2_EE_50-600 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-630 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-630 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 630 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-630 Local library name: N2_EE_50-630 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-660 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-660 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 660 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-660 Local library name: N2_EE_50-660 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-330 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-330 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 330 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-330 Local library name: N2_EE_50-330 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-360 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-360 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 360 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-360 Local library name: N2_EE_50-360 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-390 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-390 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 390 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-390 Local library name: N2_EE_50-390 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-420 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-420 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 420 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-420 Local library name: N2_EE_50-420 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-180 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-180 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 180 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-180 Local library name: N2_EE_50-180 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-240 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-240 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 240 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-240 Local library name: N2_EE_50-240 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-480 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-480 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 480 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-480 Local library name: N2_EE_50-480 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-540 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-540 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 540 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-540 Local library name: N2_EE_50-540 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-690 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-690 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 690 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-690 Local library name: N2_EE_50-690 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-150 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-150 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 150 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-150 Local library name: N2_EE_50-150 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-210 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-210 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 210 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-210 Local library name: N2_EE_50-210 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-270 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-270 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 270 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-270 Local library name: N2_EE_50-270 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-450 RNA library

text: University of Washington Genome Sciences

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-450 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 450 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-450 Local library name: N2_EE_50-450 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-510 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-510 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 510 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-510 Local library name: N2_EE_50-510 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: Caenorhabditis elegans N2 early embryo EE_50-720 RNA library

text: live

text: Generic

text: Illumina sequencing of C. elegans N2 early embryo EE_50-720 polyA+ RNAseq random fragment library Make eggs, hatch in the absence of food to get them all in L1 arrest, add food and wait 50 hours. Eggs are then harvested from the adults -- just a few have an egg or two. Then the eggs are incubated for 720 minutes. This sample is one of a series of developmental timepoints for N2_EE_50 samples. This sample is available through the modENCODE DCC (www.modencode.org) as: N2_EE_50-720 Local library name: N2_EE_50-720 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis elegans


name: 1131378926508 Entamoeba nuttalli P19 ENUTALLI-PE-ILI7-01 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Genomic DNA was obtained from axenic culture of strainP19 originally isolated from a rhesus monkey in Nepal. Material was provided by Dr. Hiroshi Tachibana at Department of Infectious Diseases, Tokai University School of Medicine, 143 Shimokasuya, Isehara, Kanagawa 259-1193, Japan

text: Entamoeba nuttalli

text: Generic sample from Entamoeba nuttalli


Empirical Validation

text: Stanford University

text: live

text: Generic

text: Drosophila melanogaster

text: Empirical Validation of Pooled Resequencing


name: Caenorhabditis briggsae AF16 young adult YA RNA library YA-2

text: live

text: Generic

text: C. briggsae strain AF16 young adult animal. Synchronized L1s grew at 20 degree for about 48-50 hrs on enriched OP50 plates Illumina sequencing of C. briggsae AF16 young adult library YA-2 polyA+ RNAseq random fragment library This sample is available through the modENCODE DCC (www.modencode.org) as: AF16_YA-2 This sample is a biological replicate for DCC project: AF16_YA-1 Local library name: AF16_YA-2 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis briggsae


name: Caenorhabditis briggsae AF16 early embryo RNA library EE-3

text: live

text: Generic

text: C. briggsae strain AF16 early embryos. Bleached from synchronized Adult stage animal grew at 20 degree on enriched OP50 plates. Illumina sequencing of C. briggsae AF16 early embryo library EE-3 polyA+ RNAseq random fragment library This sample is available through the modENCODE DCC (www.modencode.org) as: AF16_EE-3 This sample is a biological replicate for DCC project: AF16_EE-2 Local library name: AF16_EE-3 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis briggsae


name: Caenorhabditis briggsae AF16 larval L2 RNA library L2-2

text: live

text: Generic

text: C. briggsae strain AF16 larval L2 animal. Synchronized L1s grew at 20 degree for about 18 hrs on enriched OP50 plates Illumina sequencing of C. briggsae AF16 larval L2 library L2-2 polyA+ RNAseq random fragment library This sample is available through the modENCODE DCC (www.modencode.org) as: AF16_L2-2 This sample is a biological replicate for DCC project: AF16_L2-1 Local library name: AF16_L2-2 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis briggsae


name: Caenorhabditis briggsae AF16 larval L4 RNA library L4-2

text: live

text: Generic

text: C. briggsae strain AF16 larval L4 animal. Synchronized L1s grew at 20 degree for about 42 hrs on enriched OP50 plates Illumina sequencing of C. briggsae AF16 larval L4 library L4-2 polyA+ RNAseq random fragment library This sample is available through the modENCODE DCC (www.modencode.org) as: AF16_L4-2 This sample is a biological replicate for DCC project: AF16_L4-1 Local library name: AF16_L4-2 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis briggsae


name: Caenorhabditis japonica DF5081 larval L2 RNA library L2-1

text: live

text: Generic

text: C. japonica strain DF5081 L2 animals; Synchronized L1s grew at 20 degree for about 18 hrs on enriched OP50 plates to reach L2 stage Illumina sequencing of C. japonica DF5081 larval L2 library L2-1 polyA+ RNAseq random fragment library This sample is available through the modENCODE DCC (www.modencode.org) as: DF5081_L2-1 Local library name: DF5081_L2-1 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis japonica


text: live

text: Generic

text: Illumina sequences of C. japonica DF5081 larval L4 library L4-1 polyA+ RNAseq random fragment library. C. japonica strain DF5081 L4 animals; Synchronized L1s grew at 20 degree for 42 hrs on enriched OP50 plates to reach L4 stage. This sample is available through the modENCODE DCC (www.modencode.org) as: DF5081_L4-1 Local library name: DF5081_L4-1 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis japonica


name: Caenorhabditis japonica DF5081 young adult male RNA library 1

text: live

text: Generic

text: C. japonica strain DF5081 young adult male: Synchronized L1s grown at 20 degrees for about 48 hrs on enriched OP50 plates to reach the young adult stage stage. Males were then hand-picked and placed in separate tubes for RNA collection. Illumina sequencing of C. japonica DF5081 adult male library AD-M-1 polyA+ RNAseq random fragment library This sample is available through the modENCODE DCC (www.modencode.org) as: DF5081_AD-M-1 Local library name: DF5081_AD-M-1 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis japonica


name: Caenorhabditis japonica DF5081 young adult female RNA library 1

text: live

text: Generic

text: C. japonica strain DF5081 young adult female: Synchronized L1s grown at 20 degrees for about 48 hrs on enriched OP50 plates to reach the young adult stage stage. Females were then hand-picked and placed in separate tubes for RNA collection. Illumina sequencing of C. japonica DF5081 adult female library AD-F-1 polyA+ RNAseq random fragment library This sample is available through the modENCODE DCC (www.modencode.org) as: DF5081_AD-F-1 Local library name: DF5081_AD-F-1 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis japonica


name: Caenorhabditis japonica DF5081 early embryo RNA library EE-1

text: live

text: Generic

text: C. japonica strain DF5081 early embryo animals Illumina sequencing of C. japonica DF5081 early embryo library EE-1 polyA+ RNAseq random fragment library This sample is available through the modENCODE DCC (www.modencode.org) as: DF5081_EE-1 Local library name: DF5081_EE-1 Quality values are ASCII encoded Phred + 33.

text: Caenorhabditis japonica


E-Tian

text: Beijing Genome Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


Keller

text: Beijing Genome Institute

text: live

text: Generic

text: Sorghum bicolor

text: Generic sample from Sorghum bicolor


Colwellia SLW05

text: McMaster University

text: live

text: Generic

text: Colwellia SLW05 was isolated from a melt pond in Antarctic sea ice. Unlike a related species (Colwellia psychrerythraea strain 34H), it secretes an extracellular ice-binding protein that changes the morphology of growing ice.

text: Colwellia sp. SLW05

text: Colwellia SLW05 genome


text: Beijing Genome Institute

text: live

text: Generic

text: Cynoglossus semilaevis

text: female

characteristic: sex

text: Cynoglossus semilaevis CYSEZW001


dietary perturbations

characteristic: External Id

text: SJTU

text: live

text: Generic

text: mouse gut metagenome

text: Structural resilience of the gut microbiota in adult mice under dietary perturbations


text: Beijing Genome Institute

characteristic: INSDC center name

text: live

text: Generic

text: Cynoglossus semilaevis

text: Male

text: Cynoglossus semilaevis CYSEZZ002


name: Ruditapes philippinarum transcriptome (stimulated hemocytes)

text: University of Barcelona

characteristic: INSDC first public

text: live

text: Generic

text: R. philippinarum clams were obtained from a commercial shellfish farm (Vigo, Galicia, Spain). Clams were maintained in open circuit filtered sea water tanks at 15°C with aeration and were fed daily with Phaeodactylum tricornutum and Isochrysis galbana. Prior to the experiments, clams were acclimatized to aquaria conditions for one week. R. philippinarum hemocytes previously stimulated with different pathogen-associated molecular patterns (PAMPs) to obtain the greatest number of immune-related transcripts as possible. Clams were notched in the shell in the area adjacent to the anterior adductor muscle. Hemolymph was withdrawn from the adductor muscle of the clams with an insulin syringe, pooled and distributed in 6-well plates, 7 ml per well. Hemocytes were allowed to settle to the base of the wells for 30 min at 15°C in the darkness. Then, the hemocytes were stimulated with 50 µg/ml of Polyinosinic:polycytidylic acid (Poly I:C), Peptidoglycans, ß- Glucan, Vibrio anguillarum DNA (CpG), Lipopolysaccharide (LPS), Lipoteichoic acid (LTA) or 1 x 106 UFC/ml of heat-inactivated Vibrio anguillarum (one stimulus per well) for 3 h at 15°C. All stimuli were purchased from SIGMA. After stimulation, hemolymph was centrifuged at 1700 g at 4ºC for 5 minutes, the pellet was resuspended in 1 ml of Trizol (Invitrogen) and RNA was extracted following the manufacturer’s protocol. After RNA extraction, samples were treated with Turbo DNase free (Ambion) to eliminate DNA. Next, the concentration and purity of the RNA samples were measured using a NanoDrop ND1000 spectrophotometer. From each sample, 1 μg of RNA was pooled and used for the production of normalized cDNA for 454 sequencing in the Unitat de Genòmica (SCT-UB, Barcelona, Spain). The RNA quality was assessed in a Bioanalyzer 2010 (Agilent Technologies). Next, the RNA sample was processed, normalized and sequenced with a 454 GS FLX (Roche-454 Life Sciences) sequencer using the Titanium chemistry.

text: Ruditapes philippinarum

text: Transcriptomics of in vitro immune-stimulated hemocytes from the Manila clam Ruditapes philippinarum using high-throughput sequencing.


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC last update

text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae GA17719

text: Streptococcus pneumoniae GA17719

type: AMR curated data - CABBAGE

value: rifampin

value: Streptococcus pneumoniae

value: erythromycin

value: resistant

value: vancomycin

value: susceptible

value: quinupristin-dalfopristin

value: chloramphenicol

value: penicillin

value: tetracycline

value: amoxicillin

value: trimethoprim-sulfamethoxazole

value: clindamycin

value: gatifloxacin

value: levofloxacin

value: cefuroxime

value: meropenem

value: cefotaxime


text: live

characteristic: INSDC status

text: USA

text: Generic

characteristic: NCBI submission model

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA14373

characteristic: strain

text: Streptococcus pneumoniae GA14373

value: Streptococcus pneumoniae

value: rifampin

value: intermediate


text: live

text: USA

text: Generic

characteristic: NCBI submission package

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA40028

characteristic: organism

text: Streptococcus pneumoniae GA40028

value: sparfloxacin

value: ciprofloxacin

value: erythromycin

value: resistant

value: vancomycin

value: linezolid


text: Joint Genome Institute, U.S. Department of Energy

characteristic: INSDC secondary accession

text: live

text: Generic

text: Porphyra umbilicalis asexual low light

text: maturing

text: 10C, 50 umol, photons, Provasilii's enrichment (West and McBride), 14:10 L:D, bubbled

characteristic: in vivo conditions

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Porphyra umbilicalis

text: asexual

text: Generic sample from Porphyra umbilicalis

characteristic: title


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: Porphyra umbilicalis vegetative low light

characteristic: description

text: standard

text: standard

text: Porphyra umbilicalis


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Porphyra umbilicalis vegetative high light

text: standard

text: standard

text: Porphyra umbilicalis


text: live

text: Generic

text: Porphyra umbilicalis olio

text: standard

text: standard

text: Porphyra umbilicalis


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1146_sR3288_2010


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1172_sR1216_2009


text: live

text: Generic

text: Rhinovirus C

text: Rhinovirus p1221_sR1448_2009


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Ornithorhynchus anatinus

characteristic: sample id

text: rna

characteristic: sample type

text: Generic sample from Ornithorhynchus anatinus


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rhinovirus A

text: Rhinovirus p1205_sR3204_2009


text: live

text: Generic

characteristic: NCBI submission package

text: blade

text: Porphyra purpurea gametophyte

text: gametophyte

text: nutrient light and dark

text: standard

text: standard

text: Porphyra purpurea

text: Generic sample from Porphyra purpurea


text: live

text: Generic

text: conchocelis

text: Porphyra purpurea conchocelis

text: standard

text: standard

text: Porphyra purpurea

characteristic: organism

text: Generic sample from Porphyra purpurea


characteristic: INSDC secondary accession

text: live

text: Generic

text: Saccharomonospora glauca K62

text: Saccharomonospora glauca K62

characteristic: strain

text: Generic sample from Saccharomonospora glauca K62


Iapar

text: University of Montreal

text: live

text: Generic

text: Coffea arabica

text: Iapar


Rubi

text: University of Montreal

text: live

text: Generic

text: Coffea arabica

text: Coffea arabica cv. Rubi


text: live

text: Generic

text: Zostera marina

text: Zostera marina

characteristic: sample number

text: Generic sample from Zostera marina


text: live

text: Generic

text: Piloderma croceum F 1598

text: Piloderma croceum F 1598

text: F 1598

text: Generic sample from Piloderma croceum F 1598


text: Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, CAS

text: live

text: Generic

text: insect hemocoel

characteristic: niche

text: Beauveria bassiana

text: Fungal cells isolated from the fifith instar larvae of cotton bollworm 48 hours post injection with conidia

text: ARSEF 2860

text: CB RNA_seq


text: live

text: Generic

text: insect cuticle

text: Beauveria bassiana

text: Fungal cells differentiated on locust hind wings 24 hours post inoculation

text: ARSEF 2860

text: LW RNA_seq

characteristic: title


characteristic: External Id

text: live

text: Generic

text: plant root exudate

text: Beauveria bassiana

text: Mycelia grown in corn root exudates for 24 hours

text: ARSEF 2860

text: RE RNA_seq


text: University of Pennsylvania

text: live

text: Generic

characteristic: SRA accession

characteristic: age

text: pooled male and female

characteristic: gender

text: control wild type (w, 5905)

characteristic: genotype

text: Drosophila melanogaster

text: 2-3d 5905 (wild-type) fly

text: whole fly

characteristic: tissue

text: Drosophila_2-3d_whole fly_wild type


text: University of Pennsylvania

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: pooled male and female

text: Drosophila melanogaster

text: 2-3d nbr[f02257] null fly

text: whole fly

text: Drosophila_2-3d_whole fly_nbr null 1


text: Corces, Biology, Emory University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Interphase

characteristic: cell cycle phase

text: Kc167 Drosophila Embryonic

characteristic: cell line

characteristic: chip antibody

text: Drosophila melanogaster

text: Kc cells


text: Corces, Biology, Emory University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: Mitosis

text: Kc167 Drosophila Embryonic

text: Drosophila melanogaster

characteristic: organism

text: Kc cells


characteristic: External Id

text: Corces, Biology, Emory University

text: live

text: Generic

text: Interphase

text: Kc167 Drosophila Embryonic

text: dCTCF

text: Drosophila melanogaster

text: Kc cells

characteristic: title


text: Corces, Biology, Emory University

text: live

text: Generic

characteristic: SRA accession

text: Mitosis

text: Kc167 Drosophila Embryonic

text: dCTCF

text: Drosophila melanogaster

text: Kc cells


text: Corces, Biology, Emory University

text: live

text: Generic

text: Interphase

text: Kc167 Drosophila Embryonic

text: BEAF

text: Drosophila melanogaster

text: Kc cells


text: Corces, Biology, Emory University

text: live

text: Generic

text: Mitosis

text: Kc167 Drosophila Embryonic

text: BEAF

text: Drosophila melanogaster

text: Kc cells


text: Corces, Biology, Emory University

text: live

text: Generic

text: Mitosis

text: Kc167 Drosophila Embryonic

text: Su(Hw)

text: Drosophila melanogaster

text: Kc cells


text: LSBM, RCAST

text: live

text: Generic

text: Human umbilical vein cells

characteristic: cell type

text: Homo sapiens

text: within 6 passage

characteristic: passage

text: H3K27Ac NS ChIP seq


text: LSBM, RCAST

text: live

text: Generic

text: Human umbilical vein cells

text: Homo sapiens

text: within 6 passage

text: MEF2C control ChIP seq

text: DMSO for 4 hr

characteristic: treatment


text: LSBM, RCAST

characteristic: INSDC center name

text: live

text: Generic

text: Human umbilical vein cells

text: Homo sapiens

text: within 6 passage

text: MEF2C statin ChIP seq

text: statin for 4 hr


text: IGBMC

characteristic: INSDC first public

text: live

text: Generic

text: H3396 cells

text: CBP

text: Santa Cruz

characteristic: chip antibody manufacturer

text: Santa Cruz: CBP (A22)

characteristic: comment

text: Homo sapiens

text: H3396 cells

text: CBP E2

text: estrogen


text: IGBMC

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: H3396 cells

text: CBP

text: Santa Cruz

text: Santa Cruz: CBP (A22)

text: Homo sapiens

text: H3396 cells

text: CBP EtOH

text: ethanol


text: IGBMC

text: live

text: Generic

text: H3396 cells

characteristic: cell line

text: peptide MGP(Rme2a)AASPMC

characteristic: chip antibody

text: In house

text: In house Rabbit polyclonal: peptide MGP(Rme2a)AASPMC

text: Homo sapiens

text: H3396 cells

text: CBPR742m E2

text: estrogen


text: IGBMC

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: H3396 cells

text: CBPR768m peptide ISPS(Rme2a)MPQPC

text: In house

text: In house Rabbit polyclonal: peptide ISPS(Rme2a)MPQPC

text: Homo sapiens

text: H3396 cells

text: CBPR768m E2

text: estrogen


characteristic: External Id

text: IGBMC

text: live

text: Generic

text: H3396 cells

text: CBPR768m peptide ISPS(Rme2a)MPQPC

text: In house

text: Homo sapiens

characteristic: organism

text: H3396 cells

text: CBPR768m EtOH

text: ethanol


text: IGBMC

text: live

text: Generic

characteristic: SRA accession

text: H3396 cells

text: CBPR2151m peptide AGVP(Rme2a)PGVPC

text: In house

text: In house Rabbit polyclonal: peptide AGVP(Rme2a)PGVPC

text: Homo sapiens

text: H3396 cells

text: CBPR2151m E2

characteristic: title

text: estrogen


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: CBPR2151m peptide AGVP(Rme2a)PGVPC

text: In house

text: Homo sapiens

text: H3396 cells

text: CBPR2151m EtOH

text: ethanol


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: ERa

text: Santa Cruz

text: Santa Cruz: ERa (HC20)

text: Homo sapiens

text: H3396 cells

text: ERa E2

text: estrogen


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: ERa

text: Santa Cruz

text: Santa Cruz: ERa (HC20)

text: Homo sapiens

text: H3396 cells

text: ERa EtOH

text: ethanol


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: H3/H4 acetylated

text: In house

text: In house Rabbit polyclonal: Total H3/H4 acetylated

text: Homo sapiens

text: H3396 cells

text: H3-4ac E2

text: estrogen


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: Abcam

text: Abcam: H3K18ac (ab1191)

text: Homo sapiens

text: H3396 cells

text: H3K18ac E2

text: estrogen


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: Abcam

text: Abcam: H3K18ac (ab1191)

text: Homo sapiens

text: H3396 cells

text: H3K18ac EtOH

text: ethanol


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: PolII 7C2 clone

text: In house

text: In house Mouse: 7C2 Clone

text: Homo sapiens

text: H3396 cells

text: PolII E2

text: estrogen


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: PolII 7C2 clone

text: In house

text: In house Mouse: 7C2 Clone

text: Homo sapiens

text: H3396 cells

text: PolII EtOH

text: ethanol


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: Santa Cruz

text: Santa Cruz: RAC3 (M397)

text: Homo sapiens

text: H3396 cells

text: RAC3 E2

text: estrogen


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: CARM1 aa. 595-608

text: In house

text: In house Rabbit polyclonal: aa. 595-608

text: Homo sapiens

text: H3396 cells

text: CARM1 E2

text: estrogen


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: CARM1 aa. 595-608

text: In house

text: In house Rabbit polyclonal: aa. 595-608

text: Homo sapiens

text: H3396 cells

text: CARM1 EtOH

text: ethanol


text: IGBMC

text: live

text: Generic

text: H3396 cells

text: Homo sapiens

text: H3396 cells

text: Input E2 rep1

text: estrogen


CucumberLeaf

text: Boyce Thompson Institute

text: live

text: Generic

text: Cucumis sativus

text: leaf

characteristic: tissue type

text: cucumber leaf tissue


stem

text: Boyce Thompson Institute

text: live

text: Generic

text: Cucumis sativus

text: cucumber stem tissue


female

text: Boyce Thompson Institute

text: live

text: Generic

text: Cucumis sativus

text: cucumber female flower tissue


male

text: Boyce Thompson Institute

text: live

text: Generic

text: Cucumis sativus

text: cucumber male flower tissue


text: Boyce Thompson Institute

text: live

text: Generic

text: Cucumis sativus

text: cucumber expanded ovary tissue (unfertilized)


text: Boyce Thompson Institute

text: live

text: Generic

text: Cucumis sativus

text: cucumber expanded ovary tissue (fertilized)


ovary

text: Boyce Thompson Institute

text: live

text: Generic

text: Cucumis sativus

text: cucumber ovary tissue (unexpanded)


root

text: Boyce Thompson Institute

text: live

text: Generic

text: Cucumis sativus

text: cucumber root tissue


teddril

text: Boyce Thompson Institute

text: live

text: Generic

text: Cucumis sativus

text: cucumber tendril tissue


text: Boyce Thompson Institute

text: live

text: Generic

text: Cucumis sativus

text: cucumber tendril tissue (base part)


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: Rhinovirus A

characteristic: strain

text: Rhinovirus p1224_sR3080_2008


text: Computer Science, The Hebrew University of Jerusalem

characteristic: INSDC center name

text: live

text: Generic

text: HA

characteristic: epitope tag

text: wt

characteristic: genotype

text: old

characteristic: histone h3

text: Saccharomyces cerevisiae

text: before release from arrest

characteristic: sampling time

text: H3-HA, wt, generation 0

text: H3-HA (old) generation 0


characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: wt

text: new

text: Saccharomyces cerevisiae

text: before release from arrest

text: H3-T7, wt, generation 0

text: H3-T7 (new) generation 0


text: live

text: Generic

characteristic: NCBI submission model

text: HA

text: wt

text: old

text: Saccharomyces cerevisiae

text: after 5 hrs of G2/M arrest

text: H3-HA, wt, G2/M

text: H3-HA (old) in G2/M


characteristic: INSDC secondary accession

text: live

text: Generic

text: wt

text: new

text: Saccharomyces cerevisiae

text: after 5 hrs of G2/M arrest

text: H3-T7, wt, G2/M

text: H3-T7 (new) in G2/M


text: live

text: Generic

characteristic: NCBI submission package

text: HA

text: wt

text: old

text: Saccharomyces cerevisiae

text: at 1 cell division

text: H3-HA, wt, generation 1

text: H3-HA (old) generation 1


characteristic: External Id

text: live

text: Generic

text: wt

text: new

text: Saccharomyces cerevisiae

text: at 1 cell division

text: H3-T7, wt, generation 1

text: H3-T7 (new) generation 1


text: live

text: Generic

text: HA

text: cac1 deletion

text: old

text: Saccharomyces cerevisiae

characteristic: organism

text: after 3 cell divisions

text: H3-HA, cac1 deletion, generation 3

text: H3-HA (old) cac1 deletion generation 3


text: live

text: Generic

characteristic: SRA accession

text: cac1 deletion

text: new

text: Saccharomyces cerevisiae

text: after 3 cell divisions

text: H3-T7, cac1 deletion, generation 3

text: H3-T7 (new) cac1 deletion generation 3


text: live

text: Generic

text: HA

text: top1 deletion

text: old

text: Saccharomyces cerevisiae

text: after 3 cell divisions

text: H3-HA, top1 deletion, generation 3

text: H3-HA (old) top1 deletion generation 3

characteristic: title


text: live

text: Generic

text: top1 deletion

text: new

text: Saccharomyces cerevisiae

text: after 3 cell divisions

text: H3-T7, top1 deletion, generation 3

text: H3-T7 (new) top1 deletion generation 3


text: live

text: Generic

text: HA

text: H4 tail deletion

text: old

text: Saccharomyces cerevisiae

text: after 3 cell divisions

text: H3-HA, H4 tail deletion, generation 3

text: H3-HA (old) H4 tail delete generation 3


text: live

text: Generic

text: H4 tail deletion

text: new

text: Saccharomyces cerevisiae

text: after 3 cell divisions

text: H3-T7, H4 tail deletion, generation 3

text: H3-T7 (new) H4 tail delete generation 3


text: Biostatistics and Computational Biology, Dana-Farber Cancer Institute

text: live

text: Generic

characteristic: chip seq antibody

text: abcam

characteristic: chip-seq antibody manufacturer

text: Sonication

characteristic: fragmentation methods

text: Mus musculus

text: Liver

characteristic: time

text: liver

characteristic: tissue

text: HDAC3 ChIP at ZT10-1


characteristic: INSDC center name

text: live

text: Generic

text: abcam

text: Sonication

text: Mus musculus

text: Liver

characteristic: strain

text: liver

text: HDAC3 ChIP at ZT10-2


characteristic: INSDC first public

text: live

text: Generic

text: abcam

text: Sonication

text: Mus musculus

text: Liver

text: liver

text: HDAC3 ChIP at ZT10-3


characteristic: INSDC last update

text: live

text: Generic

text: abcam

text: Sonication

text: Mus musculus

text: Liver

text: liver

text: HDAC3 ChIP at ZT22-1


text: live

characteristic: INSDC status

text: Generic

text: abcam

text: Sonication

text: Mus musculus

text: Liver

text: liver

text: HDAC3 ChIP at ZT22-2


text: live

text: Generic

characteristic: NCBI submission model

text: NCoR

text: home made rabbit polyclonal

text: Sonication

text: Mus musculus

text: Liver

text: liver

text: NCoR ChIP at ZT10


characteristic: INSDC secondary accession

text: live

text: Generic

text: NCoR

text: home made rabbit polyclonal

text: Sonication

text: Mus musculus

text: Liver

text: liver

text: NCoR ChIP at ZT22


text: live

text: Generic

characteristic: NCBI submission package

text: Rev-erba

text: cell signaling

text: Sonication

text: Mus musculus

text: Liver

text: liver

text: Rev-erba ChIP at ZT10


characteristic: External Id

text: live

text: Generic

text: Rev-erba

text: cell signaling

text: Sonication

text: Mus musculus

text: Liver

text: liver

text: Rev-erba ChIP at ZT22


text: live

text: Generic

text: Pol II

text: santa cruz

text: Sonication

text: Mus musculus

characteristic: organism

text: Liver

text: liver

text: Pol II ChIP at ZT10


text: live

text: Generic

characteristic: SRA accession

text: Pol II

text: santa cruz

text: Sonication

text: Mus musculus

text: Liver

text: liver

text: Pol II ChIP at ZT22


text: live

text: Generic

text: Sonication

text: Mus musculus

text: Liver

text: liver

text: Liver input at ZT10

characteristic: title


text: live

text: Generic

text: Sonication

text: Mus musculus

text: Liver

text: liver

text: Liver input at ZT22


text: live

text: Generic

characteristic: chip seq antibody

text: Millipore

text: Mnase Digestion

text: Mus musculus

text: Liver

text: liver

text: H3K9ac at ZT10


text: live

text: Generic

text: Millipore

characteristic: chip-seq antibody manufacturer

text: Mnase Digestion

text: Mus musculus

text: Liver

text: liver

text: H3K9ac at ZT22


text: live

text: Generic

text: Millipore

text: Mnase Digestion

characteristic: fragmentation methods

text: Mus musculus

text: Liver

text: liver

text: H3K9ac in HDAC3 KO liver at ZT10


text: live

text: Generic

text: Mnase Digestion

text: Mus musculus

text: Liver

characteristic: time

text: liver

text: Liver input at ZT10 Mnase digestion


text: live

text: Generic

text: Mnase Digestion

text: Mus musculus

text: Liver

text: liver

characteristic: tissue

text: Liver input at ZT22 Mnase digestion


characteristic: INSDC center name

text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1152_sR1111_2009


text: Zon Laboratory, Children's Hospital Boston

text: live

text: Generic

text: None WCE

characteristic: antibody catalog number

text: Erthyroid Progenitor (G1E)

characteristic: cell type

text: Mus musculus

text: Input ChIP-Seq in mouse G1E treated with BMP


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Santa Cruz SC-9008

text: Erthyroid Progenitor (G1E)

characteristic: chip antibody

text: Mus musculus

text: Gata2 ChIP-Seq in mouse G1E treated with BMP


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Santa Cruz SC-7965

text: Erthyroid Progenitor (G1E)

text: Mus musculus

text: Smad1 ChIP-Seq in mouse G1E treated with BMP


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission package

text: None WCE

text: Erthyroid Progenitor (G1ER)

text: Mus musculus

characteristic: organism

text: Input ChIP-Seq in mouse G1ER treated with BIO


text: live

text: Generic

characteristic: SRA accession

text: Santa Cruz SC-265

text: Erthyroid Progenitor (G1ER)

text: Mus musculus

text: Gata1 ChIP-Seq in mouse G1ER treated with BIO

characteristic: title


text: live

text: Generic

text: Santa Cruz SC-7965

text: Erthyroid Progenitor (G1ER)

text: Mus musculus

text: Smad1 ChIP-Seq in mouse G1ER treated with BMP


text: live

text: Generic

text: Santa Cruz SC-9008

text: Hematopoietic Stem & Progenitor Cells

text: Homo sapiens

text: GATA2 ChIP-seq CD34+ progenitors BMP


text: live

text: Generic

text: Santa Cruz SC-7965

text: Pro-erythroblasts

text: Homo sapiens

text: SMAD1 ChIP-seq CD34 ertyhroid BMP


text: Institute of Metabolic Science, University of Cambridge

text: live

text: Generic

text: Mus musculus

text: Liver tissue

characteristic: strain

characteristic: time point

text: Liver


text: live

text: Generic

text: Mus musculus

text: Liver tissue

text: Liver

characteristic: tissue


characteristic: INSDC center name

text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1191_sR1286_2009


text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1201_sR3023_2009


text: Naval Medical Research Center, Biological Defense Research Directorate

text: live

text: Generic

characteristic: NMRC sample ID

characteristic: culture-collection

text: Bacillus thuringiensis serovar berliner ATCC 10792

text: berliner

characteristic: serovar

text: ATCC 10792

text: Bacillus thuringiensis strain ATCC_10792 NS1035


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Rhinovirus A

text: Rhinovirus p1148_sR1495_2009


characteristic: INSDC secondary accession

text: live

text: USA

text: Generic

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae GA05245

text: Streptococcus pneumoniae GA05245

value: cefaclor

value: chloramphenicol

value: susceptible

value: penicillin

value: quinupristin-dalfopristin

value: ofloxacin

value: tetracycline


characteristic: External Id

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Rhinovirus A

text: Rhinovirus p1103_sR1167_2009


text: live

text: USA

text: Generic

characteristic: SRA accession

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA13723

characteristic: organism

characteristic: strain

text: Streptococcus pneumoniae GA13723

characteristic: title

value: cefotaxime

value: clindamycin

value: meropenem

value: trimethoprim-sulfamethoxazole

value: cefuroxime

value: amoxicillin

value: trovafloxacin

value: levofloxacin


characteristic: INSDC center name

text: live

text: USA

text: Generic

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae GA47794

text: Streptococcus pneumoniae GA47794

value: Streptococcus pneumoniae

value: erythromycin

value: resistant

value: vancomycin

value: ciprofloxacin

value: ceftriaxone

value: intermediate

value: rifampin

value: telithromycin


name: 1131384245488 HM1:IMSS Clone A ENTCLONE1-PE-ILI10-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Genomic DNA was obtained from axenic culture of a clone (Clona A) from Entamoeba histolytica strain HM1:IMSS from Dr. Egbert Tannich, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany

characteristic: description

text: Entamoeba histolytica HM-1:IMSS-A

text: Generic sample from Entamoeba histolytica HM-1:IMSS-A


name: 1131377699611 HM1:IMSS Clone B ENTCLONE2-PE-ILI11-1 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Genomic DNA was obtained from axenic culture of a clone (Clone B) from Entamoeba histolytica strain HM1:IMSS from Dr. Egbert Tannich, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany

text: Entamoeba histolytica HM-1:IMSS-B

text: Generic sample from Entamoeba histolytica HM-1:IMSS-B


text: ENCODE DCC

text: live

text: Generic

text: rabbit polyclonal

characteristic: antibody antibodydescription

text: Rabbit polyclonal. Antibody Target: CTCF

text: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

characteristic: antibody targetdescription

characteristic: antibody vendorid

text: Millipore

characteristic: antibody vendorname

text: ATCC

characteristic: biomaterial provider

text: neuroblastoma cell line, treatment: differentiated with retinoic acid, (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: protocol

text: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)

characteristic: protocol description

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

text: HudsonAlpha_ChipSeq_SK-N-SH_RA_CTCF_v041610.2

text: No special treatment or protocol applies

characteristic: treatment description


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Goat polyclonal IgG, 200 ?g/ml. Epitope mapping at the C-terminus of Pax-5 of human origin. Recommended for detection of Pax-5 of m, r and h origin by WB, IP, IF, IHC(P) and ELISA

text: Goat polyclonal IgG, 200 micrograms/ml. Epitope mapping at the C-terminus of Pax-5 of human origin. Recommended for detection of Pax-5 of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: PAX5

text: This gene encodes a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA-binding motif, known as the paired box. PAX proteins are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: Coriell

text: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

characteristic: organism

text: 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

text: tier 1

text: MACS

text: HudsonAlpha_ChipSeq_GM12892_PAX5-C20_v041610.1

characteristic: title


text: ENCODE DCC

text: live

text: Generic

text: Mouse monoclonal. Antibody Target: NRSF

characteristic: antibody antibodydescription

text: Neuron-restrictive silencer transcription factor

characteristic: antibody targetdescription

text: (Made by Protein Expression Center: pec@caltech.edu)

characteristic: antibody vendorid

text: Dr. David Anderson at Caltech

characteristic: antibody vendorname

text: David Anderson, Caltech

text: ATCC

characteristic: biomaterial provider

text: neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.

characteristic: cell description

characteristic: controlid

text: ChipSeq

characteristic: datatype

text: Chromatin IP Sequencing

characteristic: datatype description

characteristic: labexpid

text: Homo sapiens

characteristic: protocol

text: a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers)

text: 2-cycles of PCR (Myers)

text: tier 1

text: MACS

text: SK-N-SH


characteristic: External Id

text: ENCODE DCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: HEB (A-20) Rabbit polyclonal IgG, 200 ?g/ml. Epitope mapping within the C-terminus of HEB of human origin. Antibody Target: TCF12

text: The protein encoded by this gene is a member of the basic helix-loop-helix (bHLH) E-protein family that recognizes the consensus binding site (E-box) CANNTG. This encoded protein is expressed in many tissues, among them skeletal muscle, thymus, B- and T-cells, and may participate in regulating lineage-specific gene expression through the formation of heterodimers with other bHLH E-proteins. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined.

text: Santa Cruz Biotech

text: Santa Cruz Biotechnology

text: ATCC

text: hepatocellular carcinoma

text: ChipSeq

text: Chromatin IP Sequencing

text: Homo sapiens

text: one 15-cycle round of PCR (Myers)

characteristic: protocol description

text: 1-cycle of PCR (Myers)

characteristic: replicate

text: tier 1

characteristic: replicate description

text: MACS

characteristic: softwareversion

characteristic: treatment description