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text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 269319


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 269301


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 269439


text: live

characteristic: LabPH

text: Generic

text: Generic

characteristic: biosamplemodel

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 269381


text: live

text: Generic

text: Generic

text: no

characteristic: hiv

text: human metagenome

characteristic: organism

text: no

text: African American

text: human metagenome 269419


text: live

text: Generic

text: Generic

text: no

text: human metagenome

characteristic: patient

text: no

characteristic: pid

text: African American

text: human metagenome 269459


characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: yes

text: African American

characteristic: race

text: human metagenome 259026


characteristic: External Id

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 269379

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 269361

characteristic: visit


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 259007


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 269359


text: live

text: menses

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 269259


text: live

characteristic: LabPH

text: Generic

text: Generic

characteristic: biosamplemodel

text: no

text: human metagenome

text: no

text: Caucasian

text: human metagenome 269519


text: live

text: Generic

text: Generic

text: no

characteristic: hiv

text: human metagenome

characteristic: organism

text: yes

text: African American

text: human metagenome 269561


text: live

text: Generic

text: Generic

text: no

text: human metagenome

characteristic: patient

text: yes

characteristic: pid

text: African American

text: human metagenome 269539


characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: yes

text: African American

characteristic: race

text: human metagenome 269541


characteristic: External Id

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 269559

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 269461

characteristic: visit


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 269481


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Generic

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 269619


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 269479


text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: no

text: human metagenome

text: no

text: Latino/Hispanic

text: human metagenome 269499


text: live

characteristic: LabPH

text: Generic

text: Generic

text: no

characteristic: hiv

text: human metagenome

text: yes

text: African American

text: human metagenome 269621


text: live

text: Generic

text: Generic

text: no

text: human metagenome

characteristic: organism

characteristic: patient

text: yes

text: African American

text: human metagenome 269599


characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: no

characteristic: pid

text: African American

text: human metagenome 270592


characteristic: External Id

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: yes

text: African American

characteristic: race

text: human metagenome 272176


characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 272256

characteristic: title


characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 270652

characteristic: visit


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 272096


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 270712


text: live

text: Generic

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 272016


text: live

text: menses

characteristic: LabPH

text: Generic

text: Generic

text: no

characteristic: hiv

text: human metagenome

text: yes

text: African American

text: human metagenome 271200


text: live

text: Generic

text: Generic

text: no

text: human metagenome

characteristic: organism

characteristic: patient

text: no

text: African American

text: human metagenome 270892


characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: no

characteristic: pid

text: African American

text: human metagenome 270894


characteristic: External Id

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: yes

text: African American

characteristic: race

text: human metagenome 270714


characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 271380

characteristic: title


characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 272018

characteristic: visit


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 271080


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 271022


text: live

text: Generic

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 271020


text: live

characteristic: LabPH

text: Generic

text: Generic

text: no

characteristic: hiv

text: human metagenome

text: no

text: African American

text: human metagenome 272658


text: live

text: Generic

text: Generic

text: no

text: human metagenome

characteristic: organism

characteristic: patient

text: no

text: African American

text: human metagenome 272738


characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: no

characteristic: pid

text: African American

text: human metagenome 272736


characteristic: External Id

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: no

text: African American

characteristic: race

text: human metagenome 272656


characteristic: INSDC center name

text: live

text: Generic

text: Generic

text: yes

text: human metagenome

text: no

text: African American

text: human metagenome 272816

characteristic: title


characteristic: INSDC last update

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 272496

characteristic: visit


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 273138


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: no

text: human metagenome

text: no

text: African American

text: human metagenome 273056


text: live

text: Generic

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: no

text: human metagenome

text: yes

text: African American

text: human metagenome 272898


text: live

text: menses

characteristic: LabPH

text: Generic

text: Generic

text: no

characteristic: hiv

text: human metagenome

text: no

text: African American

text: human metagenome 272336


text: live

text: Generic

text: Generic

text: no

text: human metagenome

characteristic: organism

characteristic: patient

text: yes

text: African American

text: human metagenome 272576


characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: yes

text: human metagenome

text: no

characteristic: pid

text: African American

text: human metagenome 272818


characteristic: External Id

text: live

text: Generic

text: Generic

text: no

text: human metagenome

text: yes

text: African American

characteristic: race

text: human metagenome 272896


text: Corces, Biology, Emory University

characteristic: INSDC center name

text: live

text: Generic

text: S2 DRSC: Schneider's line 2

characteristic: cell line

text: CP190 antibody (rabbit)

characteristic: chip antibody

text: Drosophila melanogaster

text: S2 cells

characteristic: title

text: control

characteristic: treatment


text: Corces, Biology, Emory University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: S2 DRSC: Schneider's line 2

text: CP190 antibody (rabbit)

text: Drosophila melanogaster

text: S2 cells

text: 3AB treated


text: Corces, Biology, Emory University

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: S2 DRSC: Schneider's line 2

text: Su(Hw) antibody 406 (rabbit)

text: Drosophila melanogaster

text: S2 cells

text: control


text: Corces, Biology, Emory University

text: live

text: Generic

text: S2 DRSC: Schneider's line 2

text: Su(Hw) antibody 406 (rabbit)

text: Drosophila melanogaster

characteristic: organism

text: S2 cells

text: 3AB treated


text: Corces, Biology, Emory University

text: live

text: Generic

text: S2 DRSC: Schneider's line 2

text: Mod(mdg4)2.2 antibody (rabbit)

text: Drosophila melanogaster

text: S2 cells

text: control


text: Corces, Biology, Emory University

text: live

text: Generic

text: S2 DRSC: Schneider's line 2

text: Mod(mdg4)2.2 antibody (rabbit)

text: Drosophila melanogaster

text: S2 cells

text: 3AB treated


text: Corces, Biology, Emory University

text: live

text: Generic

text: S2 DRSC: Schneider's line 2

text: dCTCF antibody 68 (rat)

text: Drosophila melanogaster

text: S2 cells

text: control


text: Corces, Biology, Emory University

text: live

text: Generic

text: S2 DRSC: Schneider's line 2

text: dCTCF antibody 68 (rat)

text: Drosophila melanogaster

text: S2 cells

text: 3AB treated


text: Corces, Biology, Emory University

text: live

text: Generic

text: S2 DRSC: Schneider's line 2

text: Drosophila melanogaster

text: S2 cells

text: control


text: Corces, Biology, Emory University

text: live

text: Generic

text: S2 DRSC: Schneider's line 2

text: Drosophila melanogaster

text: S2 cells

text: 3AB treated


Drosophila simulans Kib32

text: University of Veterinary Medicine Vienna

text: live

text: Generic

text: Drosophila simulans

text: Drosophila simulans Kib32 genome


text: University of British Columbia

text: live

text: Generic

text: Saccharomyces cerevisiae S288C

characteristic: strain

text: Generic sample from Saccharomyces_cerevisiae


text: University of Illinois at Urbana-Champaign

characteristic: INSDC first public

text: live

text: Generic

text: A soybean near-isogenic line that harbors rhg1-b from PI 88788

characteristic: description

text: Glycine max

text: SCN resistant soybean line


characteristic: External Id

text: University of Florida

text: live

text: Generic

text: KSHV

characteristic: infecting virus

text: anti-Argonaute 2A8

characteristic: ip antibody

text: Homo sapiens

text: B cell lymphoma

text: BCBL-1 mRNA


text: University of Florida

characteristic: INSDC center name

text: live

text: Generic

characteristic: cell line

text: KSHV

text: anti-Argonaute 2A8

text: Homo sapiens

text: B cell lymphoma

text: BC-3 mRNA


text: University of Florida

text: live

text: Generic

text: KSHV

text: anti-Argonaute 2A8

text: Homo sapiens

text: B cell lymphoma

text: BC-3 miRNA biological replicate 1

characteristic: title


text: University of Florida

text: live

text: Generic

text: KSHV

text: anti-Argonaute 2A8

text: Homo sapiens

text: B cell lymphoma

text: BC-3 miRNA biological replicate 2


text: University of Florida

text: live

text: Generic

text: KSHV

text: anti-Argonaute 2A8

text: Homo sapiens

text: B cell lymphoma

text: BC-3 miRNA biological replicate 3


text: University of Florida

text: live

text: Generic

text: KSHV

text: anti-Argonaute 2A8

text: Homo sapiens

text: B cell lymphoma

text: BCBL-1 miRNA biological replicate 1


text: University of Florida

text: live

text: Generic

text: KSHV

text: anti-Argonaute 2A8

text: Homo sapiens

text: B cell lymphoma

text: BCBL-1 miRNA biological replicate 2


text: College of Agriculture, Bu-Ali Sina University

text: live

text: Generic

text: 4-5 leaves

characteristic: dev-stage

text: leaf

characteristic: organ

text: Viola tricolor

text: MHV-Cold stress-Viola library


text: University of Georgia

characteristic: INSDC last update

text: live

text: Generic

characteristic: cultivar

text: Zea diploperennis

text: leaf

characteristic: tissue-type

text: Zea diploperennis (M-2) genome: random shotgun sample

text: plasmid

characteristic: vector


text: University of Georgia

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Zea luxurians

text: leaf

text: Zea luxurians (G-5) genome: random shotgun sample

text: plasmid


text: University of Georgia

characteristic: INSDC first public

text: live

text: Generic

text: Zea luxurians

characteristic: organism

text: leaf

text: Zea luxurians (G-42) genome: random shotgun sample

text: plasmid


characteristic: External Id

text: University of Crete

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: collection date

text: Total DNA extraction from water column

characteristic: description

text: Crete

characteristic: geo loc name

text: seawater

characteristic: isolation-source

text: marine metagenome

text: Generic sample from Bacteria


text: Institute of Military Veterinary

characteristic: INSDC center name

text: live

text: Generic

text: Bats are reservoir animals harboring many important pathogenic viruses and have capability to transmit them to humans and other animals. In order to establish an effective surveillance to monitor transboundary spread of bat viruses between Myanmar and China, tissue samples from six bat species from two Burmese counties close to Yunnan province of China, were collected and tested for their virome through metagenomics by Solexa sequencing and bioinformatic analysis. In total, 3,742,314 reads were generated, and over 86.14% were assembled into 1,649,512 contigs with average length of 114bp, of which 131,729 (8%) contigs were viral sequences belonging to 24 viral families. Of the 131,729 viral contigs 87.42% (115157/131729) were vertebrate viruses. Insect viruses and phages respectively constituted 5.65% (7442/131729) and 5.37% (7074/131729) of the total. The remaining 2056 viral contigs belonged to plant viruses and unclassified viruses. The metagenomic results were further confirmed by PCR of selected viruses in all bat samples followed by phylogenetic analysis, which led to the discovery of some novel bat viruses in the genera Mamastrovirus, Bocavirus, Circovirus, Iflavirus and Orthohepadnavirus. The PCR results also demonstrated the prevalence rates of each of selected viruses in two bat species. In conclusion, the present study is the first report showing the bat virome in Myanmar, and the results obtained further expands the spectrum of viruses harbored by bats.

text: Viruses

text: Complete virome profiling of bats from Myanmar by metagenomic analysis of tissue samples reveals more novel mammalian viruses

characteristic: title


454 reads from ATM colonies

text: University of Vienna

characteristic: INSDC last update

text: live

text: Generic

text: Bacteria

text: Pooled 16S rRNA gene sequences


Drosophila simulans Africa Pool-Seq

text: live

text: Generic

text: Drosophila simulans

text: Drosophila simulans Africa Pool-Seq


ARREO

text: CNB

text: live

text: Generic

text: freshwater sediment metagenome


Myanmar Bats

text: Institute of Military Veterinary

text: live

text: Generic

text: Totally, 853 dead bodies of insectivous bats comprising Miniopterus fuliginosus (M. fuliginosus), Hipposideros armiger (H. armiger), Rhinolophus ferrumequinum (R. ferrumequinum), Myotis chinensis (M. chinensis), Megaderma lyra (M. lyra) and Hipposideros fulvus (H. fulvus), were purchased from Burmese living in border areas between Myanmar and Yunnan province in October and December, 2008. All bats were collected from habitats in two Burmese counties, Sedon and Wutao, which are close to Tengchong county of Yunnan province in China. The organs in thorax and abdomen of each bat were separately collected and stored at -20?.

text: Viruses


text: Genomics, IMPPC

text: live

text: Generic

text: Control

characteristic: agent

characteristic: biological replicate

text: HeLa

characteristic: cell line

text: Homo sapiens

text: Cervical cancer cell line (HeLa)

text: Control replicate 1


text: Genomics, IMPPC

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Control

text: HeLa

text: Homo sapiens

text: Cervical cancer cell line (HeLa)

text: Control replicate 2


text: Genomics, IMPPC

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

text: Control

text: HeLa

text: Homo sapiens

text: Cervical cancer cell line (HeLa)

text: Control replicate 3


characteristic: External Id

text: Genomics, IMPPC

text: live

text: Generic

text: EGF

text: HeLa

text: Homo sapiens

characteristic: organism

text: Cervical cancer cell line (HeLa)

text: EGF replicate 1


text: Genomics, IMPPC

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: EGF

text: HeLa

text: Homo sapiens

text: Cervical cancer cell line (HeLa)

text: EGF replicate 2


text: Genomics, IMPPC

text: live

text: Generic

text: EGF

text: HeLa

text: Homo sapiens

text: Cervical cancer cell line (HeLa)

text: EGF replicate 3


text: Department of Anatomy and Developmental Biology, Kyoto prefectural university of medicine

text: live

text: Generic

text: sorted Flk1+ mesoderm progenitor cells (ES-derived)

characteristic: cell type

text: Santa Cruz, sc-1237, lot K1611

characteristic: chip antibody info

text: BD pharmingen, L97-56, lot 17576

text: Santa Cruz, sc-25310, lot J0611

characteristic: clone name

characteristic: differentiation day

text: wild type

characteristic: genotype/variation

text: Mus musculus

text: J1 derived from 129 background

characteristic: parental cell line


characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

text: Santa Cruz, sc-1237, lot K1611

text: BD pharmingen, L97-56, lot 17576

text: Santa Cruz, sc-25310, lot J0611

text: Mus musculus

text: J1 derived from 129 background

characteristic: title


text: live

characteristic: INSDC status

text: Generic

text: embryonic stem (ES) cells

text: Santa Cruz, sc-1237, lot K1611

text: BD pharmingen, L97-56, lot 17576

text: Santa Cruz, sc-25310, lot J0611

text: undifferentiated

text: wild type

text: Mus musculus

text: J1 derived from 129 background


text: live

text: Generic

characteristic: NCBI submission model

text: embryonic stem (ES) cells

text: Santa Cruz, sc-1237, lot K1611

text: BD pharmingen, L97-56, lot 17576

text: Santa Cruz, sc-25310, lot J0611

text: undifferentiated

text: Mus musculus

text: J1 derived from 129 background


text: Haag Lab, Department of Biology, University of Maryland

characteristic: INSDC first public

text: live

text: Generic

text: RTA 1.8.70.0

characteristic: base calling software version

text: L4 & adult pseudo-females

characteristic: developmental stage

text: Caenorhabditis elegans

text: poly-A RNA

characteristic: rna

text: whole animal

text: JK574 fog-2(q71)

characteristic: strain

text: C.elegans XX 1


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RTA 1.10.36

text: L4 & adult pseudo-females

text: Caenorhabditis elegans

characteristic: organism

text: poly-A RNA

text: whole animal

text: JK574 fog-2(q71)

text: C.elegans XX 2


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult pseudo-females

text: Caenorhabditis elegans

text: poly-A RNA

text: whole animal

text: JK574 fog-2(q71)

text: C.elegans XX 3


text: live

text: Generic

text: RTA 1.8.70.0

text: L4 & adult males

text: Caenorhabditis elegans

text: poly-A RNA

text: whole animal

text: JK574 fog-2(q71)

text: C. elegans XO 1


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult males

text: Caenorhabditis elegans

text: poly-A RNA

text: whole animal

text: JK574 fog-2(q71)

text: C. elegans XO 2


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult males

text: Caenorhabditis elegans

text: poly-A RNA

text: whole animal

text: JK574 fog-2(q71)

text: C. elegans XO 3


text: live

text: Generic

text: RTA 1.12.4.2

text: L4 & adult pseudo-females

text: Caenorhabditis briggsae

text: poly-A RNA

text: whole animal

text: C. briggsae XX 1


text: live

text: Generic

text: RTA 1.12.4.2

text: L4 & adult pseudo-females

text: Caenorhabditis briggsae

text: poly-A RNA

text: whole animal

text: C. briggsae XX 2


text: live

text: Generic

text: RTA 1.12.4.2

text: L4 & adult pseudo-females

text: Caenorhabditis briggsae

text: poly-A RNA

text: whole animal

text: C. briggsae XX 3


text: live

text: Generic

text: RTA 1.12.4.2

text: L4 & adult males

text: Caenorhabditis briggsae

text: poly-A RNA

text: whole animal

text: AF16 (WT)

text: C. briggsae XO 1


text: live

text: Generic

text: RTA 1.12.4.2

text: L4 & adult males

text: Caenorhabditis briggsae

text: poly-A RNA

text: whole animal

text: AF16 (WT)

text: C. briggsae XO 2


text: live

text: Generic

text: RTA 1.12.4.2

text: L4 & adult males

text: Caenorhabditis briggsae

text: poly-A RNA

text: whole animal

text: AF16 (WT)

text: C. briggsae XO 3


text: live

text: Generic

text: RTA 1.8.70.0

text: L4 & adult females

text: Caenorhabditis japonica

text: poly-A RNA

text: whole animal

text: DF5081 (WT)

text: C. japonica XX 1


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult females

text: Caenorhabditis japonica

text: poly-A RNA

text: whole animal

text: DF5081 (WT)

text: C. japonica XX 2


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult females

text: Caenorhabditis japonica

text: poly-A RNA

text: whole animal

text: DF5081 (WT)

text: C. japonica XX 3


text: live

text: Generic

text: RTA 1.8.70.0

text: L4 & adult males

text: Caenorhabditis japonica

text: poly-A RNA

text: whole animal

text: DF5081 (WT)

text: C. japonica XO 1


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult males

text: Caenorhabditis japonica

text: poly-A RNA

text: whole animal

text: DF5081 (WT)

text: C. japonica XO 2


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult males

text: Caenorhabditis japonica

text: poly-A RNA

text: whole animal

text: DF5081 (WT)

text: C. japonica XO 3


text: live

text: Generic

text: RTA 1.7.48

text: L4 & adult females

text: Caenorhabditis brenneri

text: poly-A RNA

text: whole animal

text: PB2801 (WT)

text: C. brenneri XX 1


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult females

text: Caenorhabditis brenneri

text: poly-A RNA

text: whole animal

text: PB2801 (WT)

text: C. brenneri XX 2


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult females

text: Caenorhabditis brenneri

text: poly-A RNA

text: whole animal

text: PB2801 (WT)

text: C. brenneri XX 3


text: live

text: Generic

text: RTA 1.8.70.0

text: L4 & adult males

text: Caenorhabditis brenneri

text: poly-A RNA

text: whole animal

text: PB2801 (WT)

text: C. brenneri XO 1


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult males

text: Caenorhabditis brenneri

text: poly-A RNA

text: whole animal

text: PB2801 (WT)

text: C. brenneri XO 2


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult males

text: Caenorhabditis brenneri

text: poly-A RNA

text: whole animal

text: PB2801 (WT)

text: C. brenneri XO 3


text: live

text: Generic

text: RTA 1.8.70.0

text: L4 & adult females

text: Caenorhabditis remanei

text: poly-A RNA

text: whole animal

text: PB4641 (WT)

text: C. remanei XX 1


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult females

text: Caenorhabditis remanei

text: poly-A RNA

text: whole animal

text: PB4641 (WT)

text: C. remanei XX 2


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult females

text: Caenorhabditis remanei

text: poly-A RNA

text: whole animal

text: PB4641 (WT)

text: C. remanei XX 3


text: live

text: Generic

text: RTA 1.8.70.0

text: L4 & adult males

text: Caenorhabditis remanei

text: poly-A RNA

text: whole animal

text: PB4641 (WT)

text: C. remanei XO 1


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult males

text: Caenorhabditis remanei

text: poly-A RNA

text: whole animal

text: PB4641 (WT)

text: C. remanei XO 2


text: live

text: Generic

text: RTA 1.10.36

text: L4 & adult males

text: Caenorhabditis remanei

text: poly-A RNA

text: whole animal

text: PB4641 (WT)

text: C. remanei XO 3


text: SCELSE-NUS

text: live

text: Generic

characteristic: cell cycle stage

text: trophoblast stem (TS) cells

characteristic: cell type

text: H2A.Z antibodies produced in-house [PMID:12660166]

characteristic: chip antibody

text: blastocysts

text: ChIP DNA

characteristic: molecule subtype

text: Mus musculus

text: TS cells_H2A.Z G1

text: H2A.Z G1


text: SCELSE-NUS

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

text: S

text: trophoblast stem (TS) cells

text: blastocysts

text: ChIP DNA

text: Mus musculus

text: TS cells_H2A.Z S

text: H2A.Z S

characteristic: title


text: SCELSE-NUS

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: M

text: trophoblast stem (TS) cells

text: blastocysts

text: ChIP DNA

text: Mus musculus

text: TS cells_H2A.Z M

text: H2A.Z M


text: SCELSE-NUS

text: live

text: Generic

text: trophoblast stem (TS) cells

text: Abcam

characteristic: chip antibody vendor

text: blastocysts

characteristic: developmental stage

text: ChIPreChIP DNA

text: Mus musculus

text: TS cells_reChIP H2A G1

text: reChIP H2A G1


characteristic: External Id

text: SCELSE-NUS

text: live

text: Generic

text: S

text: trophoblast stem (TS) cells

text: Abcam

text: blastocysts

text: ChIPreChIP DNA

text: Mus musculus

text: TS cells_reChIP H2A S

characteristic: strain

text: reChIP H2A S


text: SCELSE-NUS

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: M

text: trophoblast stem (TS) cells

text: Abcam

text: blastocysts

text: ChIPreChIP DNA

text: Mus musculus

text: TS cells_reChIP H2A M

text: reChIP H2A M


text: SCELSE-NUS

text: live

text: Generic

characteristic: SRA accession

text: trophoblast stem (TS) cells

text: blastocysts

text: Input DNA

text: Mus musculus

characteristic: organism

text: TS cells_Input G1

text: Input G1


text: SCELSE-NUS

text: live

text: Generic

text: S

characteristic: cell cycle stage

text: trophoblast stem (TS) cells

characteristic: cell type

text: blastocysts

text: Input DNA

text: Mus musculus

text: TS cells_Input S

text: Input S


text: SCELSE-NUS

text: live

text: Generic

text: M

text: trophoblast stem (TS) cells

text: blastocysts

text: Input DNA

characteristic: molecule subtype

text: Mus musculus

text: TS cells_Input M

text: Input M


text: SCELSE-NUS

characteristic: INSDC center name

text: live

text: Generic

text: trophoblast stem (TS) cells

text: anti-CTCF

characteristic: chip antibody

text: Abcam

text: blastocysts

text: ChIP DNA

text: Mus musculus

text: TS cells_CTCF G1

text: CTCF G1


text: SCELSE-NUS

characteristic: INSDC last update

text: live

text: Generic

text: S

text: trophoblast stem (TS) cells

text: anti-CTCF

text: Abcam

text: blastocysts

text: ChIP DNA

text: Mus musculus

text: TS cells_CTCF S

text: CTCF S

characteristic: title


text: SCELSE-NUS

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: M

text: trophoblast stem (TS) cells

text: anti-CTCF

text: Abcam

text: blastocysts

text: ChIP DNA

text: Mus musculus

text: TS cells_CTCF M

text: CTCF M


text: SCELSE-NUS

text: live

text: Generic

characteristic: NCBI submission model

text: trophoblast stem (TS) cells

text: Abcam

characteristic: chip antibody vendor

text: blastocysts

text: ChIP DNA

text: Mus musculus

text: TS cells_H3 G1

text: H3 G1


characteristic: External Id

text: SCELSE-NUS

text: live

text: Generic

text: S

text: trophoblast stem (TS) cells

text: Abcam

text: blastocysts

characteristic: developmental stage

text: ChIP DNA

text: Mus musculus

text: TS cells_H3 S

text: H3 S


text: SCELSE-NUS

characteristic: INSDC secondary accession

text: live

text: Generic

text: M

text: trophoblast stem (TS) cells

text: Abcam

text: blastocysts

text: ChIP DNA

text: Mus musculus

text: TS cells_H3 M

characteristic: strain

text: H3 M


text: live

characteristic: LabPH

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Generic

characteristic: biosamplemodel

text: yes

characteristic: hiv

text: human metagenome

characteristic: patient

text: no

characteristic: pid

text: African American

characteristic: race

text: human metagenome 215704

characteristic: visit


text: Prof. Hagai Bergman, Medical Neurobiology, The Hebrew University of Jeruslem

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: blood leukocytes

characteristic: cell type

text: healthy

characteristic: disease state

text: male

characteristic: gender

text: Homo sapiens

characteristic: organism

text: Blood leukocytes, healthy control

text: Healthy control (HC) volunteer, sample 1

characteristic: title


characteristic: External Id

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: blood leukocytes

text: healthy

text: male

text: Homo sapiens

text: Blood leukocytes, healthy control

text: Healthy control (HC) volunteer, sample 2


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: blood leukocytes

text: healthy

text: male

text: Homo sapiens

text: Blood leukocytes, healthy control

text: Healthy control (HC) volunteer, sample 3


text: live

text: Generic

text: blood leukocytes

text: Parkinson's disease

text: male

text: Homo sapiens

text: Blood leukocytes, PD, pre-DBS

text: Parkinson's Disease (PD) patient, pre-DBS, sample 4

text: pre-deep brain stimulation

characteristic: treatment state


text: live

text: Generic

text: blood leukocytes

text: Parkinson's disease

text: male

text: Homo sapiens

text: Blood leukocytes, PD, post-DBS, on electrical stimulation

text: Parkinson's Disease (PD) patient, post-DBS on electrical stimulation (ON-Stim), sample 5

text: post-deep brain stimulation on electrical stimulation


text: live

text: Generic

text: blood leukocytes

text: Parkinson's disease

text: male

text: Homo sapiens

text: Blood leukocytes, PD, post-DBS, off electrical stimulation

text: Parkinson's Disease (PD) patient, post-DBS following 1 hour off electrical stimulation (OFF-Stim), sample 6

text: post-deep brain stimulation following 1 hour off electrical stimulation


text: live

text: Generic

text: blood leukocytes

text: Parkinson's disease

text: male

text: Homo sapiens

text: Blood leukocytes, PD, pre-DBS

text: Parkinson's Disease (PD) patient, pre-DBS, sample 7

text: pre-deep brain stimulation


text: live

text: Generic

text: blood leukocytes

text: Parkinson's disease

text: male

text: Homo sapiens

text: Parkinson's Disease (PD) patient, post-DBS on electrical stimulation (ON-Stim), sample 8


text: live

text: Generic

text: blood leukocytes

text: Parkinson's disease

text: male

text: Homo sapiens

text: Parkinson's Disease (PD) patient, post-DBS following 1 hour off electrical stimulation (OFF-Stim), sample 9


text: live

text: Generic

text: blood leukocytes

text: Parkinson's disease

text: male

text: Homo sapiens

text: Blood leukocytes, PD, pre-DBS

text: Parkinson's Disease (PD) patient, pre-DBS, sample 10

text: pre-deep brain stimulation


text: live

text: Generic

text: blood leukocytes

text: Parkinson's disease

text: male

text: Homo sapiens

text: Parkinson's Disease (PD) patient, post-DBS on electrical stimulation (ON-Stim), sample 11


text: live

text: Generic

text: blood leukocytes

text: Parkinson's disease

text: male

text: Homo sapiens

text: Parkinson's Disease (PD) patient, post-DBS following 1 hour off electrical stimulation (OFF-Stim), sample 12


text: Tresch Group, Plant Breeding Research, Max Planck Institute Cologne

text: live

text: Generic

text: Mus musculus

text: Mouse liver reference cell pool

characteristic: strain

text: liver

characteristic: tissue

text: Reference cell pool


characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: Mouse liver single cell

text: liver

text: Single cell #1


characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus

text: Mouse liver single cell

text: liver

text: Single cell #2


characteristic: INSDC last update

text: live

text: Generic

text: Mus musculus

text: Mouse liver single cell

text: liver

text: Single cell #3


text: live

text: Generic

text: Mus musculus

text: Mouse liver single cell

text: liver

text: Single cell #4


text: Livestock Gentec, University of Alberta

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: eukaryote

characteristic: investigation type

text: DNA

characteristic: material

text: Bos taurus

text: diploid

characteristic: ploidy

characteristic: project name

text: MIGS Eukaryotic sample from Bos taurus


Black pepper infected

characteristic: External Id

text: University Federal of Para

text: live

text: Generic

text: Piper nigrum

characteristic: organism

text: Piper nigrum Infected

characteristic: title


text: Polyploidy, Hybrid Vigor, and Epigenetics, Molecular Cell and Developmental Biology, The University of Texas at Austin

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 4 DAP (days after pollination)

characteristic: age

text: Silique tissue

characteristic: cell type

characteristic: ecotype of arabidopsis thaliana

text: Arabidopsis thaliana x Arabidopsis arenosa

text: F1 interspecific hybrid

characteristic: sample type

text: 4 DAP silique tissue


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: 4 DAP (days after pollination)

text: Silique tissue

text: Ler

text: F1 interspecific hybrid

text: 4 DAP silique tissue

text: LerXAa


characteristic: INSDC last update

text: live

text: Generic

text: 4 DAP (days after pollination)

text: Silique tissue

text: Col

text: F1 interspecific hybrid

text: 4 DAP silique tissue

text: ColXAa


text: live

text: Generic

text: 4 DAP (days after pollination)

text: Silique tissue

text: Ler

text: F8 allotetraploid

text: 4 DAP silique tissue


text: Developmental Biology, Institute of Life Sciences, Fuzhou University

text: live

text: Generic

text: male

characteristic: gender

text: Mus musculus

text: skin

characteristic: strain

characteristic: time

text: skin

characteristic: tissue

text: Time 0


characteristic: External Id

text: live

text: Generic

text: male

text: Mus musculus

characteristic: organism

text: skin

text: 1 day after treatment

text: skin

characteristic: title

text: 150mg/km Cyclophosphamide

characteristic: treatment


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: male

text: Mus musculus

text: skin

text: 2 day after treatment

text: skin

text: 150mg/km Cyclophosphamide


text: Meehan, Human genetics Unit, Medical Research Council

text: live

text: Generic

text: 29-32 days

characteristic: age

characteristic: animal id

characteristic: chip antibody

text: A

characteristic: experiment id

text: Mus musculus

text: whole liver extract

text: B6C3F1/Crl (C57BL/6 male x C3H/He female)

text: liver

text: A H3K36me3 vehicle donor1024

text: vehicle

characteristic: treament


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: 29-32 days

text: A

text: Mus musculus

text: whole liver extract

text: liver

text: A H3K36me3 phenobarbital donor2021

text: phenobarbital


characteristic: External Id

text: live

text: Generic

text: 29-32 days

text: A

text: Mus musculus

text: whole liver extract

characteristic: strain

text: liver

characteristic: tissue

text: A H3K36me3 phenobarbital donor2024

text: phenobarbital


text: live

text: Generic

text: 29-32 days

text: INPUT

text: A

text: Mus musculus

characteristic: organism

text: whole liver extract

text: liver

text: A INPUT vehicle donor1021

characteristic: title

text: vehicle


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 29-32 days

text: INPUT

text: A

text: Mus musculus

text: whole liver extract

text: liver

text: A INPUT vehicle donor1024

text: vehicle


text: live

text: Generic

characteristic: NCBI submission model

text: 29-32 days

characteristic: age

text: INPUT

text: A

text: Mus musculus

text: whole liver extract

text: liver

text: A INPUT phenobarbital donor2021

text: phenobarbital


text: live

text: Generic

text: 29-32 days

characteristic: animal id

text: INPUT

characteristic: chip antibody

text: A

text: Mus musculus

text: whole liver extract

text: liver

text: A INPUT phenobarbital donor2024

text: phenobarbital


text: live

text: Generic

text: 29-32 days

text: A

characteristic: experiment id

text: Mus musculus

text: whole liver extract

text: liver

text: A H3K36me3 vehicle donor1021

text: vehicle

characteristic: treament


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: 29-32 days

text: INPUT

text: B

text: Mus musculus

text: whole liver extract

text: liver

text: B INPUT vehicle donor1

text: vehicle


characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: 29-32 days

text: INPUT

text: B

text: Mus musculus

text: whole liver extract

text: liver

text: B INPUT vehicle donor7

text: vehicle


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: 29-32 days

text: INPUT

text: B

text: Mus musculus

text: whole liver extract

text: liver

text: B INPUT phenobarbital donor11

text: phenobarbital


text: live

text: Generic

text: 29-32 days

text: INPUT

text: B

text: Mus musculus

text: whole liver extract

characteristic: strain

text: liver

characteristic: tissue

text: B INPUT phenobarbital donor15

text: phenobarbital


text: live

text: Generic

text: 29-32 days

text: B

text: Mus musculus

characteristic: organism

text: whole liver extract

text: liver

text: B H3K4me2 vehicle donor1

characteristic: title

text: vehicle


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 29-32 days

text: B

text: Mus musculus

text: whole liver extract

text: liver

text: B H3K4me2 vehicle donor7

text: vehicle


text: live

text: Generic

characteristic: NCBI submission model

text: 29-32 days

characteristic: age

text: B

text: Mus musculus

text: whole liver extract

text: liver

text: B H3K4me2 phenobarbital donor11

text: phenobarbital


text: live

text: Generic

text: 29-32 days

characteristic: animal id

characteristic: chip antibody

text: B

text: Mus musculus

text: whole liver extract

text: liver

text: B H3K4me2 phenobarbital donor15

text: phenobarbital


text: live

text: Generic

text: 29-32 days

text: INPUT

text: C

characteristic: experiment id

text: Mus musculus

text: whole liver extract

text: liver

text: C INPUT vehicle donor5

text: vehicle

characteristic: treament


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: 29-32 days

text: INPUT

text: C

text: Mus musculus

text: whole liver extract

text: liver

text: C INPUT vehicle donor10

text: vehicle


characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: 29-32 days

text: INPUT

text: C

text: Mus musculus

text: whole liver extract

text: liver

text: C INPUT phenobarbital donor14

text: phenobarbital


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: 29-32 days

text: INPUT

text: C

text: Mus musculus

text: whole liver extract

text: liver

text: C INPUT phenobarbital donor17

text: phenobarbital


text: live

text: Generic

text: 29-32 days

text: C

text: Mus musculus

text: whole liver extract

characteristic: strain

text: liver

characteristic: tissue

text: C H3K27me3 vehicle donor5

text: vehicle


text: live

text: Generic

text: 29-32 days

text: C

text: Mus musculus

characteristic: organism

text: whole liver extract

text: liver

text: C H3K27me3 vehicle donor10

characteristic: title

text: vehicle


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 29-32 days

text: C

text: Mus musculus

text: whole liver extract

text: liver

text: C H3K27me3 phenobarbital donor14

text: phenobarbital


text: live

text: Generic

characteristic: NCBI submission model

text: 29-32 days

characteristic: age

text: C

text: Mus musculus

text: whole liver extract

text: liver

text: C H3K27me3 phenobarbital donor17

text: phenobarbital


text: The Procter & Gamble Company

text: live

text: Generic

text: Malassezia globosa CBS 7966

text: CBS 7966

text: Malassezia globosa strain CBS 7966 EST library


wtLbrsiRNAs

text: Yale School of Public Health

text: live

text: Generic

text: We carried out an in-depth analysis of small interfering RNAs (siRNAs) associated with L. braziliensis Argonaute1 (AGO1). In contrast to T. brucei, Leishmania siRNAs are not modified at the 3’ end, indicating that their biogenesis, and most-likely their metabolism, is different in these organisms. Similarly to T. brucei, putative mobile elements and repeats constitute the major Leishmania siRNA-producing loci and AGO1 ablation leads to accumulation of long transcripts derived from putative mobile elements. However, contrary to T. brucei, no siRNAs were detected from other genomic regions with the potential to form double-stranded RNA, namely sites of convergent transcription and inverted repeats.

characteristic: description

text: Leishmania braziliensis MHOM/BR/75/M2904

text: siRNAs associated with AGO1 in wild-type Leishmania braziliensis


text: University of British Columbia Department of Botany - Rieseberg Lab

text: live

text: Generic

text: Centaurea solstitialis

text: California CA-P1-1


BCBL1 KSHV DNA

text: UCSF/HHMI

text: live

text: Generic

text: DNA from Kaposi's sarcoma-associated herpesvirus grown in the BCBL1 human cell line. The majority of the data derived from the human cells' DNA.

text: Human gammaherpesvirus 8

text: BCBL1 KSHV DNA


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: hot springs metagenome

text: Small shallow hydrothermal spring at solfataric field near Caldeira do Esguicho (Site A, Sample I)


text: Goettingen Genomics Laboratory

text: live

text: Generic

text: hot springs metagenome

text: Small shallow hydrothermal spring at solfataric field near Caldeira do Esguicho (Site A, Sample IV)


text: Nicolaus Copernicus University

text: live

text: Generic

characteristic: Texture - clay

characteristic: Texture - sand

characteristic: Texture - silt

characteristic: Water content of soil

text: Fragments 357-786 of 16S rRNA gene

characteristic: amplification

text: Generic

characteristic: biosamplemodel

characteristic: depth

text: 20 kg of soil were collected from railway tracks 200 m from a chimney of chromium green-producing facility in Alwernia, Poland

text: Modified method of Zhou et al. (PMID 8593035)

characteristic: extraction method

text: 52 02 54.8 N

characteristic: latitude

text: 19 31 38.4 E

characteristic: longitude

text: soil metagenome

characteristic: ph

characteristic: sample size

characteristic: sample weight for DNA extraction


text: Sieving through 1/4 in and 1/16 in mesh

characteristic: Biomaterial treatment

characteristic: External Id

text: Nicolaus Copernicus University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Fresh, at 9 C

characteristic: Storage conditions

characteristic: Time of sample collection

text: Fragments 357-786 of 16S rRNA gene

text: Generic

text: 20 kg of soil sampled at a border of a rye field 70 m from a chimney of chromium green-producing facility in Alwernia, Poland

text: 50 02 40.4 N

text: 19 31 38.4 E

text: soil metagenome

characteristic: organism

characteristic: title


text: Max-Delbrueck-Center

text: live

text: Generic

characteristic: NCBI submission model

text: mixed

characteristic: developmental stage

text: Caenorhabditis elegans

text: N2 (Bristol)

characteristic: strain

text: nematode whole worm

characteristic: tissue


text: Max-Delbrueck-Center

text: live

text: Generic

text: dauer

text: Caenorhabditis elegans

text: N2 (Bristol)

text: nematode whole worm


text: Max-Delbrueck-Center

text: live

text: Generic

text: mixed

text: Pristionchus pacificus

text: RS2333 (formerly known as PS312)

text: nematode whole worm


text: Max-Delbrueck-Center

text: live

text: Generic

text: dauer

text: Pristionchus pacificus

text: RS2333 (formerly known as PS312)

text: nematode whole worm


text: Max-Delbrueck-Center

text: live

text: Generic

text: mixed

text: Strongyloides ratti

text: Basel (Dr. G. Pluschke; Swiss Tropical Insitute)

text: nematode whole worm


text: Max-Delbrueck-Center

text: live

text: Generic

text: infective larvae

text: Strongyloides ratti

text: nematode whole worm


text: University of Florida

text: live

text: Generic

text: Tragopogon porrifolius

text: ID 3928


Tekoa 2609-24

text: University of Florida

text: live

text: Generic

text: Tragopogon pratensis

text: ID: 3920


Spokane 2665-8

text: University of Florida

text: live

text: Generic

text: Tragopogon dubius

text: ID: 3938


2684-3-2 Troy

text: University of Florida

text: live

text: Generic

text: Tragopogon porrifolius

text: ID: 4012


2677-5 Pullman

text: University of Florida

text: live

text: Generic

text: Tragopogon porrifolius

text: ID: 3931


2692-16-8 Spangle

text: University of Florida

text: live

text: Generic

text: Tragopogon pratensis

text: ID: 3942


2615-4-2 Spokane

text: University of Florida

text: live

text: Generic

text: Tragopogon dubius

text: ID: 3927


2669-7-17 Oakesdale

text: University of Florida

text: live

text: Generic

text: Tragopogon dubius

text: ID: 3937


text: Scripps Translational Science Institute

text: live

text: Generic

text: methicillin resistant staphylococcus aureus clinical isolate

characteristic: description

text: Staphylococcus aureus

text: MRSA SGH-10-168


characteristic: External Id

text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Minoru Baba

characteristic: collected-by

text: Indonesia: West Java

characteristic: country

text: Galeopterus variegatus

characteristic: sample id

characteristic: sample name

text: genomic dna

characteristic: sample type

text: male

characteristic: sex

text: Generic sample from Galeopterus variegatus


WeeT

text: GNF (Genomics Institute of the Novartis Research Foundation)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: N-ethyl-N-nitrosourea (ENU), a potent chemical mutagen, was used to randomly introduce mutations dispersed throughout the C57BL/6 mouse genome. In a G3 mutagenesis screen, we subsequently used flow cytometric peripheral blood analysis to identify lymphopenic mice. In one pedigree, named WeeT, ~25% of G3 progeny had reduced peripheral blood proportions of conventional CD4 and CD8 αβ T cells, indicative of a single recessive mutation. Deep sequencing of genomic DNA after enrichment by pulldown from a custom microarray designed with probes for exons in the 4.5 Mb region of chr2 unveiled an A to C transversion in exon 5 of the Mst1 (Stk4) gene.

text: Mus musculus

text: WeeT mice are T-cell deficient due to a mutation in Mst1 (Stk4)


text: Alfred Wegener Institute for Polar and Marine Research

text: live

text: MIMS.me

characteristic: NCBI submission model

text: Eukaryotes

characteristic: biome

characteristic: collection date

text: surface

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:5.0

characteristic: env package

text: water

characteristic: feature

text: Southern Ocean: Pacific sector

characteristic: geo loc name

text: metagenome

characteristic: investigation type

text: 50.05 S 178.41 W

characteristic: lat lon

text: genomic DNA

characteristic: material

text: marine metagenome

characteristic: organism

characteristic: project name

text: MIMS Environmental/Metagenome sample from environmental sample

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIMS.me

text: Eukaryotes

text: surface

text: Keywords: GSC:MIxS;MIMS:5.0

characteristic: description

text: water

text: Southern Ocean: Pacific sector

text: metagenome

text: 52.93 S 178.41 W

text: genomic DNA

text: marine metagenome


text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Eukaryotes

characteristic: biome

text: surface

text: Keywords: GSC:MIxS;MIMS:5.0

text: water

text: Southern Ocean: Pacific sector

text: metagenome

text: 60.82 S 170.93 W

text: genomic DNA

text: marine metagenome


text: live

text: MIMS.me

text: Eukaryotes

characteristic: collection date

text: surface

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:5.0

characteristic: env package

text: water

characteristic: feature

text: Southern Ocean: Pacific sector

text: metagenome

text: 66.39 S 166.01 W

text: genomic DNA

text: marine metagenome


text: live

text: MIMS.me

text: Eukaryotes

text: surface

text: Keywords: GSC:MIxS;MIMS:5.0

text: water

text: Southern Ocean: Pacific sector

characteristic: geo loc name

text: metagenome

characteristic: investigation type

text: 69.09 S 164.88 W

characteristic: lat lon

text: genomic DNA

characteristic: material

text: marine metagenome


characteristic: External Id

text: live

text: MIMS.me

text: Eukaryotes

text: surface

text: Keywords: GSC:MIxS;MIMS:5.0

text: water

text: Southern Ocean: Pacific sector

text: metagenome

text: 69.38 S 164.86 W

text: genomic DNA

text: marine metagenome

characteristic: organism

characteristic: project name

characteristic: title


text: Health Protection Agency

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: United Kingdom: Surrey

text: human

characteristic: isolation-source

text: Escherichia coli H093460648

characteristic: strain

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

text: United Kingdom: Surrey

text: human

text: Escherichia coli H093520770

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

characteristic: geo loc name

text: human

text: Escherichia coli H093580621

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: human

text: Escherichia coli H093660495

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: human

text: Escherichia coli H093700588

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: human

text: Escherichia coli H093720386

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: human

text: Escherichia coli H093740759

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: human

text: Escherichia coli H093740495

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: sheep

text: Escherichia coli H093800010

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: pig

text: Escherichia coli H093800011

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: Lamb

text: Escherichia coli H093800012

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: Lamb

text: Escherichia coli H093800013

text: Generic sample from Escherichia coli


text: Health Protection Agency

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: United Kingdom: Surrey

text: Calf

text: Escherichia coli O157:H7 str. H093800014

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: Goat kid

text: Escherichia coli H093800016

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: Mixed Faeces

text: Escherichia coli H093800018

text: Generic sample from Escherichia coli


text: Health Protection Agency

text: live

text: Generic

text: United Kingdom: Surrey

text: Pony

text: Escherichia coli H093800019

text: Generic sample from Escherichia coli


text: Genome Research Foundation

text: live

text: Generic

text: Homo sapiens


sabaigrass

text: majorbio

text: live

text: Generic

characteristic: altitude

text: Generic

characteristic: biosamplemodel

text: China

characteristic: country

text: Twenty Eulaliopsis binata clusters were mainly collected from south of China (north latitude: 22*26′-34*51′; east longitude: 101*35′- 113*16'; altitude: 100 - 1000 m; annual average air temperature: 10.6 - 21.9℃; annual rainfall: 642 - 2330 mm )

characteristic: description

text: south China

characteristic: lat lon

text: Eulaliopsis binata

text: sabaigrass sequencing project


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: 58530 sequences from an environmental sample gained by 454-pyrosequencing on a GS FLX Titanium sequencer.

text: uncultured marine eukaryote

characteristic: organism

text: Environmental sample from the Subpolar Region

characteristic: title


Temperature tolerant pseudomonas

text: Central Research Institute for Dryland Agriculture

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: A Pseudomonas stain isolated from Hayatnagar, Rangareddy, Andra pradesh possessing temperature tolerance and also phosphate solubilization ability

text: Pseudomonas

text: Whole genome sequence of salinity tolerant biocontrol strain of Pseudomonas P21


Hippoglossus hippoglossus

text: University of Stirling

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Hippoglossus hippoglossus

text: Hippoglossus hippoglossus (Pool the families B and C)


LEC-L

text: Helmholtz Zentrum München

text: live

text: Generic

characteristic: NCBI submission package

text: GEUS

characteristic: biomaterial provider

text: groundwater

characteristic: biome

text: single-celled organism

characteristic: cell type

characteristic: collection date

text: Denmark

text: metagenome

characteristic: investigation type

text: aquifer material

characteristic: isolation-source

characteristic: label

text: groundwater metagenome

text: LEC-L


text: HHU Duesseldorf

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Expression under standard conditions

characteristic: description

text: Trichomonas vaginalis


characteristic: External Id

text: HHU Duesseldorf

characteristic: INSDC center name

text: live

text: Generic

text: Expression after 5 minutes oxygen stress

text: Trichomonas vaginalis

characteristic: organism


text: HHU Duesseldorf

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Expression after 30 minutes oxygen stress

text: Trichomonas vaginalis

characteristic: title


text: HHU Duesseldorf

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Expression after 120 minutes oxygen stress

text: Trichomonas vaginalis


text: HHU Duesseldorf

text: live

text: Generic

text: Expression after 5 minutes of oxygen stress and VEC cell infection

text: Trichomonas vaginalis


text: Auble Lab, Biomedical Sciences: Biochemistry, Molecular Biology & Genetics, University of Virginia Health System

text: live

text: Generic

text: Anti-myc (9E10)

characteristic: chip antibody

text: Hybridoma core facility at UVA

characteristic: chip antibody manufacturer

text: Saccharomyces cerevisiae

text: Myc tagged Sir2

characteristic: sample type

text: Genomic DNA

characteristic: strain

text: Sir2 ChIP-seq


text: live

text: Generic

text: Anti-myc (9E10)

text: Hybridoma core facility at UVA

text: Saccharomyces cerevisiae

text: Myc tagged Sum1

text: Genomic DNA

text: Sum1 ChIP-seq


text: live

text: Generic

text: Anti-myc (9E10)

text: Hybridoma core facility at UVA

text: Saccharomyces cerevisiae

text: Myc tagged Hst1

text: Genomic DNA

text: Hst1 ChIP-seq


text: live

text: Generic

text: Anti-myc (9E10)

text: Hybridoma core facility at UVA

text: Saccharomyces cerevisiae

text: Myc tagged Hst2

text: Genomic DNA

text: Hst2 ChIP-seq


text: live

text: Generic

text: Anti-myc (9E10)

text: Hybridoma core facility at UVA

text: Saccharomyces cerevisiae

text: Myc tagged Hst3

text: Genomic DNA

text: Hst3 ChIP-seq


text: live

text: Generic

text: Anti-myc (9E10)

text: Hybridoma core facility at UVA

text: Saccharomyces cerevisiae

text: Myc tagged Hst4

text: Genomic DNA

text: Hst4 ChIP-seq


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Genomic DNA

text: Input ChIP-seq


text: HHU Duesseldorf

text: live

text: Generic

text: Expression after 30 minutes of oxygen stress and VEC cell infection

text: Trichomonas vaginalis


text: HHU Duesseldorf

text: live

text: Generic

text: Expression after 120 minutes of oxygen stress and VEC cell infection

text: Trichomonas vaginalis


text: HHU Duesseldorf

text: live

text: Generic

text: Expression of oxygen addapted cells under standard conditions

text: Trichomonas vaginalis


text: HHU Duesseldorf

text: live

text: Generic

text: Expression of oxygen adapted cells after 5 minutes VEC cell infection

text: Trichomonas vaginalis


text: HHU Duesseldorf

text: live

text: Generic

text: Expression of oxygen adapted cells after 30 minutes VEC cell infection

text: Trichomonas vaginalis


text: HHU Duesseldorf

text: live

text: Generic

text: Expression of oxygen adapted cells after 120 minutes VEC cell infection

text: Trichomonas vaginalis


RP metacommunity

text: Dep, of Limnology

text: live

text: Generic

text: uncultured bacterium

text: bacterial communities of brackish and freshwater rock pools


text: Howe, Biochemistry, UBC

text: live

text: Generic

text: H3K4me3 (Abcam, mAbcam1012, lot 1152779)

characteristic: antibody

text: WT

characteristic: genotype/variation

text: logarithmic

characteristic: growth stage

text: Saccharomyces cerevisiae

text: Yeast


text: Howe, Biochemistry, UBC

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: logarithmic

text: Saccharomyces cerevisiae

text: Yeast


characteristic: External Id

text: Washington University, Genome Sequencing Center

characteristic: INSDC center name

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

text: Chlorocebus sabaeus

characteristic: sample id

characteristic: sample name

text: genomic dna

text: Generic sample from Chlorocebus aethiops


text: Rätsch Lab, Computational Biology Center, Memorial Sloan-Kettering Cancer Center

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: 11 days old seedlings

characteristic: developmental stage

text: Columbia

characteristic: ecotype

text: wild type

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: seedling

characteristic: title

text: untreated

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 11 days old seedlings

text: Columbia

text: Arabidopsis thaliana

text: seedling

text: untreated


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: 11 days old seedlings

text: Columbia

text: wild type

text: Arabidopsis thaliana

text: seedling

text: incubated for 4 h in liquid MS medium (mock treatment)


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: 11 days old seedlings

text: Columbia

text: wild type

text: Arabidopsis thaliana

text: seedling

text: incubated for 4 h in liquid MS medium containing 10 µg/ml cycloheximide


text: live

text: Generic

text: 11 days old seedlings

text: Columbia

text: At3g01150 & At5g53180 downregulation via miRNA

text: Arabidopsis thaliana

text: seedlings


text: live

text: Generic

text: 11 days old seedlings

text: Columbia

text: At1g43190 downregulation via miRNA

text: Arabidopsis thaliana

text: seedlings


text: live

text: Generic

text: 11 days old seedlings

text: Columbia

text: wild type

text: Arabidopsis thaliana

text: seedlings


text: live

text: Generic

text: 11 days old seedlings

text: Columbia

text: At5g53180 overexpression

text: Arabidopsis thaliana

text: seedlings


text: live

text: Generic

text: 11 days old seedlings

text: Columbia

text: At1g43190 overexpression

text: Arabidopsis thaliana

text: seedlings


text: live

text: Generic

text: 11 days old seedlings

text: Columbia

text: At3g01150 overexpression

text: Arabidopsis thaliana

text: seedlings


text: ISA

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

characteristic: collection date

text: USA

characteristic: country

text: Fish Aquaria

characteristic: environment location

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: saline water [ENVO:00002010]

characteristic: lat lon

text: In store tank water

characteristic: material

text: aquatic metagenome

text: 0.2 micron sterivex

characteristic: time


text: ISA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: USA

text: Whole Organism

text: whole organism

text: animal associated habitat [ENVO:00006776]

text: whole organism

text: apparently healthy

characteristic: health status

text: Zebrasoma veliferum

characteristic: host

text: whole fish

text: fish metagenome

text: whole fish homogenization


text: ISA

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: USA

text: Fish Aquaria

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: saline water [ENVO:00002010]

text: In store tank water

text: aquatic metagenome

characteristic: organism

text: 0.2 micron sterivex

characteristic: title


characteristic: External Id

text: ISA

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: USA

text: Whole Organism

text: whole organism

text: whole organism

text: sick;morbid

text: Xiphophorus helleri

text: whole fish

text: fish metagenome

text: whole fish homogenization


text: ISA

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

characteristic: collection date

text: USA

characteristic: country

text: Whole Organism

characteristic: environment location

text: whole organism

text: whole organism

text: sick;morbid

text: Heniochus acuminatus

text: whole fish

text: fish metagenome

text: whole fish homogenization


text: ISA

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: USA

text: Fish Aquaria

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: saline water [ENVO:00002010]

characteristic: lat lon

text: Treatment shipping bag water with fish

characteristic: material

text: aquatic metagenome

text: 0.2 micron sterivex


text: ISA

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: USA

text: Mucus

text: mucus [ENVO:02000040]

text: mucus [ENVO:02000040]

text: Dendrochirus brachypterus

text: mucus

text: fish metagenome

text: cotton swab


text: ISA

text: live

text: Generic

characteristic: NCBI submission model

text: Generic

text: USA

text: Fish Aquaria

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: saline water [ENVO:00002010]

text: Pre-departure tank water

text: aquatic metagenome

text: 0.2 micron sterivex


text: ISA

text: live

text: Generic

characteristic: NCBI submission package

text: Generic

text: USA

text: Whole Organism

text: whole organism

text: whole organism

text: sick;morbid

characteristic: health status

text: Poecilia reticulata

characteristic: host

text: skin sample

text: fish metagenome

text: skin dissection


characteristic: External Id

text: ISA

text: live

text: Generic

text: Generic

text: USA

text: Whole Organism

text: whole organism

text: whole organism

text: sick;morbid

text: Amphiprion ocellaris

text: whole fish

text: fish metagenome

characteristic: organism

text: whole fish homogenization

characteristic: title


text: ISA

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Generic

text: USA

text: Fish Aquaria

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: saline water [ENVO:00002010]

text: Control shipping bag water without fish

text: aquatic metagenome

text: 0.2 micron sterivex


text: ISA

text: live

text: Generic

text: Generic

characteristic: biosamplemodel

characteristic: collection date

text: USA

characteristic: country

text: Whole Organism

text: whole organism

text: whole organism

text: sick;morbid

text: Poecilia reticulata

text: whole fish

text: fish metagenome

text: whole fish homogenization


text: ISA

characteristic: INSDC first public

text: live

text: Generic

text: Generic

text: USA

text: Whole Organism

characteristic: environment location

text: whole organism

text: whole organism

text: sick;morbid

text: Dendrochirus brachypterus

characteristic: lat lon

text: whole fish

text: fish metagenome

text: whole fish homogenization


text: ISA

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Generic

text: USA

text: Whole Organism

text: whole organism

text: whole organism

text: sick;morbid

text: Trichogaster trichopterus

text: whole fish

characteristic: material

text: fish metagenome

text: whole fish homogenization


text: ISA

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Generic

text: Greenland

text: ENVO:00000873; ENVO:00000892; ENVO:00002026

characteristic: environment

text: freshwater biome [ENVO:00000873]

text: cold temperature habitat [ENVO:00000892]

text: brackish water [ENVO:00002026]

text: freshwater metagenome

characteristic: ph

text: Oxic

characteristic: salinity

characteristic: temp


characteristic: External Id

text: ISA

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: 11.975 (orig)

text: Generic

text: 20 (orig)

characteristic: bottle

text: 10.08 (orig)

text: 56 (orig)

characteristic: cast

text: 0.17 (orig)

characteristic: chlorophyll

text: 2.89 (orig)

characteristic: conductivity

text: 28.9 (conv)

text: USA (orig)

text: 27.107 (orig)

characteristic: density

text: 11.857 (orig)

characteristic: depth

text: top 50 m (orig)

text: 43.7 (orig)

text: 344.7 (orig)

text: ENVO:seawater;ENVO:marine_habitat;ENVO:water

text: marine biome [ENVO:00000447]

text: marine habitat [ENVO:00000569]

text: sea water [ENVO:00002149]

text: 0.5256 (orig)

characteristic: fluorescence

text: -66.45-73.03 (orig)

text: 4.94 (orig)

characteristic: leucine

text: -73.03 (orig)

characteristic: lon

text: Polar Antarctic Province

text: Palmer LTER Grid station 200.2 (orig)

text: 20.2 (orig)

characteristic: nitrate

text: 0.6 (orig)

characteristic: nitrite

text: 20.8 (orig)

text: PAL_5_2_2008_01_23 (orig)

text: marine metagenome

characteristic: organism

text: 62.9 (orig)

text: 13.5 (orig)

text: 1.6 (orig)

characteristic: phosphate

text: Oxic

text: 33.8298 (orig)

text: Niskin (orig)

text: 2 (orig)

text: OFF

text: 39 (orig)

characteristic: silicate

text: 0.9155 (orig)

text: 4.25 (orig)

characteristic: time

text: ISATAB-MBL-4:source:PAL_5_2_2008_01_23 (orig)

characteristic: title

text: 3701 (orig)

text: 30.6 (orig)