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characteristic: DNA id

text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: Toscani in Italia

text: EUR

text: European

text: Human HapMap individual NA20809

characteristic: description

text: Homo sapiens

characteristic: organism

text: TSI

characteristic: population

text: male

text: Coriell GM20809

characteristic: title


characteristic: Coriell panel

characteristic: External Id

text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Toscani in Italia

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

text: Human HapMap individual NA20810

text: Homo sapiens

text: TSI

text: male

text: Coriell GM20810


characteristic: Coriell plate

characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Toscani in Italia

text: EUR

text: European

text: Human HapMap individual NA20811

text: Homo sapiens

text: TSI

text: male

text: Coriell GM20811


characteristic: DNA id

text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: Toscani in Italia

characteristic: SRA accession

text: EUR

text: European

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA20812

text: Homo sapiens

text: TSI

text: male

characteristic: sex

text: Coriell GM20812


characteristic: Coriell panel

characteristic: External Id

text: NCBI

text: live

text: Generic

text: Toscani in Italia

text: EUR

text: European

text: Human HapMap individual NA20813

characteristic: description

text: Homo sapiens

characteristic: organism

text: TSI

characteristic: population

text: female

text: Coriell GM20813

characteristic: title


characteristic: HapMap sample ID

text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Toscani in Italia

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

text: Human HapMap individual NA20814

text: Homo sapiens

text: TSI

text: male

text: Coriell GM20814


characteristic: Coriell plate

characteristic: DNA id

text: NCBI

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Toscani in Italia

text: EUR

text: European

text: Human HapMap individual NA20815

text: Homo sapiens

text: TSI

text: male

text: Coriell GM20815


characteristic: Coriell panel

text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: Toscani in Italia

characteristic: SRA accession

text: EUR

text: European

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA20816

text: Homo sapiens

text: TSI

text: male

characteristic: sex

text: Coriell GM20816


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

text: Human HapMap individual NA20817

characteristic: description

text: Homo sapiens

characteristic: organism

text: TSI

characteristic: population

text: HapMap sample from Homo sapiens

characteristic: title


characteristic: Coriell plate

characteristic: DNA id

text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Toscani in Italia

characteristic: Population Description

text: EUR

characteristic: Super Population Code

text: European

text: Human HapMap individual NA20818

text: Homo sapiens

text: TSI

text: female

text: Coriell GM20818


characteristic: Coriell panel

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Toscani in Italia

text: EUR

text: European

text: Human HapMap individual NA20819

text: Homo sapiens

text: TSI

text: female

text: Coriell GM20819


characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

characteristic: SRA accession

text: Human HapMap individual NA20820

text: Homo sapiens

text: TSI

text: HapMap sample from Homo sapiens


text: NCBI

text: live

text: Generic

text: Toscani in Italia

text: EUR

text: European

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA20821

characteristic: description

text: Homo sapiens

characteristic: organism

text: TSI

characteristic: population

text: female

characteristic: sex

text: Coriell GM20821


characteristic: Coriell plate

characteristic: DNA id

text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Toscani in Italia

characteristic: Population Description

text: EUR

text: European

text: Human HapMap individual NA20822

text: Homo sapiens

text: TSI

text: female

text: Coriell GM20822

characteristic: title


text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA20825

text: Homo sapiens

text: TSI

text: HapMap sample from Homo sapiens


characteristic: Coriell panel

characteristic: External Id

characteristic: HapMap sample ID

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: Toscani in Italia

characteristic: SRA accession

text: EUR

characteristic: Super Population Code

text: European

text: Human HapMap individual NA20826

text: Homo sapiens

text: TSI

text: female

text: Coriell GM20826


text: NCBI

text: live

text: Generic

text: Toscani in Italia

text: EUR

text: European

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA20827

characteristic: description

text: Homo sapiens

characteristic: organism

text: TSI

characteristic: population

text: male

characteristic: sex

text: Coriell GM20827


characteristic: Coriell plate

characteristic: DNA id

text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Toscani in Italia

characteristic: Population Description

text: EUR

text: European

text: Human HapMap individual NA20828

text: Homo sapiens

text: TSI

text: female

text: Coriell GM20828

characteristic: title


characteristic: External Id

text: NCBI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: HapMap

characteristic: NCBI submission model

text: Human HapMap individual NA20829

text: Homo sapiens

text: TSI

text: HapMap sample from Homo sapiens


characteristic: HapMap sample ID

text: NCBI

text: live

text: HapMap

characteristic: NCBI submission package

characteristic: SRA accession

text: Human HapMap individual NA20831

text: Homo sapiens

text: TSI

text: HapMap sample from Homo sapiens


characteristic: Coriell panel

text: NCBI

text: live

text: Generic

text: Toscani in Italia

text: EUR

characteristic: Super Population Code

text: European

characteristic: Super Population Description

characteristic: culture collection

text: Human HapMap individual NA20832

characteristic: description

text: Homo sapiens

characteristic: organism

text: TSI

text: female

text: Coriell GM20832


characteristic: Coriell plate

characteristic: DNA id

characteristic: Family ID

text: NCBI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Yoruba in Ibadan, Nigeria

text: AFR

text: African

text: Human HapMap individual NA19222

text: Homo sapiens

text: YRI

characteristic: population

text: female

characteristic: sex

text: Coriell GM19222


characteristic: External Id

text: UGA Marine Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

characteristic: collection date

text: 1:00:00 PM

characteristic: collection time

characteristic: depth

text: Metatranscriptome of a day sample collected at Station ALOHA at 13:00 on November 13, 2005 (HOT-175).

text: aquatic

characteristic: env biome

text: Pacific Ocean

characteristic: env feature

text: saline water

text: Pacific Ocean: North Pacific Subtropical Gyre

characteristic: geo loc name

text: Hawaii Ocean Time-series station WHOTS open ocean

characteristic: isolation source

text: 22.768333 N 157.89 W

characteristic: lat lon

characteristic: material id

text: marine metagenome

text: 202.5 uM

text: 35 psu

characteristic: salinity

text: 26.16 deg C

characteristic: temperature

text: MIMS Environmental/Metagenome sample from marine metagenome

characteristic: title


characteristic: External Id

text: Center for Comparative Genomics and Bioinformatics

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: M1 Wooly Mammoth hair shaft

characteristic: description

text: Mammuthus primigenius

characteristic: organism

text: Khatanga Ice Cave - CERPOLEX /Mammuthus

characteristic: sample source

text: Generic sample from Mammuthus primigenius


characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: M11 Wooly Mammoth hair shaft

text: Mammuthus primigenius


text: live

text: Generic

text: M12 Wooly Mammoth hair shaft

text: Mammuthus primigenius


characteristic: Collection Year

text: live

text: Generic

characteristic: age

text: M13(Adams) Wooly Mammoth hair shaft from Complete Mammoth skeleton with soft tissues

text: North-East Siberia, Lena Delta

characteristic: geographic origin

characteristic: latitude

characteristic: longitude

text: Mammuthus primigenius

text: Universita Degli Studi Di Parma, Italy


characteristic: External Id

text: live

text: Generic

text: M14 Wooly Mammoth hair shaft

text: Mammuthus primigenius

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: M15 Wooly Mammoth hair shaft

text: Russia: Ayon Island

text: Mammuthus primigenius

text: Universita Degli Studi Di Parma, Italy; Site 5 reference S1


text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: M16 Wooly Mammoth hair shaft

text: Mammuthus primigenius


text: live

text: Generic

text: M18 Wooly Mammoth hair shaft from Complete Mammoth skeleton with soft tissues

characteristic: description

text: West Siberia, North, Gydan Peninsula

text: Mammuthus primigenius

characteristic: organism

text: Institute of Animal and Plant Ecology RAS, Ekaterinburg; KOS-W-1


characteristic: INSDC center name

text: live

text: Generic

text: M19 Wooly Mammoth hair shaft

text: Russia: Yukagir Village, Yakutsk

text: Mammuthus primigenius

text: Zoological Instutite, Russian Academy of Sciences, Yukagir Mammoth

characteristic: sample source


M2 (Jarkov)

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: M2 (Jarkov) Wooly Mammoth hair shaft from Partial skeleton with soft tissues

text: Taimyr Peninsula

text: Mammuthus primigenius

text: Khatanga Ice Cave - CERPOLEX /Mammuthus


characteristic: Collection Year

text: live

text: Generic

characteristic: NCBI submission model

text: M20 Wooly Mammoth hair shaft

text: Russia: Bolshoy Lyakhovskiy Island

text: Mammuthus primigenius

text: Lena Delta Reserve; LDR-P72


text: live

text: Generic

characteristic: age

text: M21 Wooly Mammoth hair shaft

text: Russia: Bolshoy Lyakhovskiy Island

characteristic: geographic origin

text: Mammuthus primigenius

text: Lena Delta Reserve; LDR-P73


text: live

text: Generic

text: M22 Wooly Mammoth hair shaft

text: N-E Siberia, Novosibirsk Islands

characteristic: latitude

characteristic: longitude

text: Mammuthus primigenius

text: Lena Delta Reserve; LDR-P74


characteristic: External Id

text: live

text: Generic

text: 59300+/- 2700

text: M25 Wooly Mammoth hair shaft

text: Russia: Bolshaya Chukochya River

text: Mammuthus primigenius

text: Ice Age Museum, Moscow; F-0299

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: M26 Wooly Mammoth hair shaft from remains Found together with skull and tusks in soft tissues

text: N-E Siberia, Indigirka R.

text: Mammuthus primigenius

text: Ice Age Museum, Moscow; F-0308


M3 (Fishhook)

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: M3 (Fishhook) Wooly Mammoth hair shaft from Partial skeleton with soft tissues

text: Taimyr Peninsula

text: Mammuthus primigenius

text: Khatanga Ice Cave - CERPOLEX /Mammuthus


text: live

text: Generic

text: M4 Wooly Mammoth hair shaft

characteristic: description

text: Mammuthus primigenius

characteristic: organism

text: Palaeoart.com


characteristic: INSDC center name

text: live

text: Generic

text: M5 Wooly Mammoth hair shaft

text: Mammuthus primigenius

text: Palaeoart.com

characteristic: sample source


characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: M6 Wooly Mammoth hair shaft

text: Mammuthus primigenius


text: live

text: Generic

characteristic: NCBI submission model

text: M7 Wooly Mammoth hair shaft

text: Mammuthus primigenius


M8 (Dima)

characteristic: Collection Year

text: live

text: Generic

characteristic: age

text: M8 (Dima) Wooly Mammoth hair shaft from Baby Mammoth mummy

text: Magadan Region

text: Mammuthus primigenius

text: Zoological Instutite, Russian Academy of Sciences


text: UGA Marine Sciences

text: live

text: MIMS.me

characteristic: collection date

text: 3:00:00 AM

characteristic: collection time

characteristic: depth

text: Metatranscriptome of night sample was collected at 03:00 on November 11, 2005 (HOT-175).

text: aquatic

characteristic: env biome

text: Pacific Ocean

characteristic: env feature

text: saline water

characteristic: geo loc name

characteristic: isolation source

text: 22.768333 N 157.89 W

characteristic: lat lon

characteristic: material id

text: marine metagenome

text: 206.4 uM

text: 35.08 psu

characteristic: salinity

text: 25.26 deg C

characteristic: temperature


name: Oceanic unicellular nitrogen-fixing UCYN-A cyanobacteria

characteristic: External Id

text: 454 Life Sciences

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Sample was collected at 15 m in the vicinity of Station ALOHA 10 (22.74N,158W) in the North Pacific Ocean. DNA from 5000 flow sorted cells was amplified by multiple displacement amplification prior to library prep.

characteristic: description

text: Cyanothece

characteristic: organism

text: Generic sample from Cyanothece

characteristic: title


VRKPS

text: National Center for Genetic Engineering and Biotechnology

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Kamphaeng Saen

characteristic: cultivar

text: Vigna radiata (L.) Wilczek

text: Vigna radiata

text: Generic sample from Vigna radiata


text: University of Tokyo, Medical Genome Sciences

text: live

text: Generic

text: TIG_hypoxia_TSS (TIG cultured under 1 % oxygen) Human fetal lung fibroblast from Japanese female

text: Homo sapiens

characteristic: strain

text: Generic sample from Homo sapiens


text: live

text: Generic

text: TIG_normoxia_TSS (TIG cultured under 21 % oxygen) Human fetal lung fibroblast from Japanese female

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: MCF7_hypoxia_TSS (MCF7 cultured under 1 % oxygen) Human Breast adenocarcinoma from Caucasian female

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: MCF7_normoxia_TSS (MCF7 cultured under 21 % oxygen) Human Breast adenocarcinoma from Caucasian female

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: 293_hypoxia_TSS (HEK293 cultured under 1 % oxygen) human embryonic kidney transformed by adenovirus

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: 293_normoxia_TSS (HEK293 cultured under 21 % oxygen)

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: hif1_1%control_TSS (DLD-1 cultured under 1 % oxygen with non-targeting siRNA transfected.) human colon adenocarcinoma

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: hif2_1%hif1a1_TSS (DLD-1 cultured under 1 % oxygen with HIF1A-targeting siRNA transfected.) human colon adenocarcinoma

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: hif3_21%hif1a1_TSS (DLD-1 cultured under 21 % oxygen with HIF1A-targeting siRNA transfected.) human colon adenocarcinoma

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: hif4_1%hif1a2_TSS (DLD-1 cultured under 1 % oxygen with HIF2A-targeting siRNA transfected.) human colon adenocarcinoma

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: hif5_21%control_TSS (DLD-1 cultured under 21 % oxygen with non-targeting siRNA transfected.) human colon adenocarcinoma

text: Homo sapiens

text: Generic sample from Homo sapiens


text: live

text: Generic

text: hif6_21%hif1a2_TSS (DLD-1 cultured under 21 % oxygen with HIF2A-targeting siRNA transfected.) human colon adenocarcinoma

text: Homo sapiens

text: Generic sample from Homo sapiens


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embyonic Stem Cells (V6.5); characteristics: Genotype: 129SvJae x C57BL/6; Passages 10-15; description: Chromatin IP against Histone H3 (Abcam 1791)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embyonic Stem Cells (V6.5); characteristics: Genotype: 129SvJae x C57BL/6; Passages 10-15; description: Chromatin IP against H3K27me3 (Upstate 07-449)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embyonic Stem Cells (V6.5); characteristics: Genotype: 129SvJae x C57BL/6; Passages 10-15; description: Chromatin IP against H3K36me3 (Abcam 9050)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embyonic Stem Cells (V6.5); characteristics: Genotype: 129SvJae x C57BL/6; Passages 10-15; description: Chromatin IP against H3K4me3 (Abcam 8580)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embyonic Stem Cells (V6.5); characteristics: Genotype: 129SvJae x C57BL/6; Passages 10-15; description: Chromatin IP against H3K9me3 (Abcam 8898)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embyonic Stem Cells (V6.5); characteristics: Genotype: 129SvJae x C57BL/6; Passages 10-15; description: Chromatin IP against H4K20me3 (Upstate 07-463)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embyonic Stem Cells (V6.5); characteristics: Genotype: 129SvJae x C57BL/6; Passages 10-15; description: Chromatin IP against RNA polymerase II (Covance MMS-126R)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embyonic Stem Cells (V6.5); characteristics: Genotype: 129SvJae x C57BL/6; Passages 10-15; description: Whole cell extract (input DNA)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embyonic Stem Cells (hybrid); characteristics: Genotype: 129SvJae x M. m. castaneus F1; Passages 4-6); description: Chromatin IP against H3K36me3 (Abcam 9050)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embyonic Stem Cells (hybrid); characteristics: Genotype: 129SvJae x M. m. castaneus F1; Passages 4-6); description: Chromatin IP against H3K4me3 (Abcam 8580)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embyonic Stem Cells (hybrid); characteristics: Genotype: 129SvJae x M. m. castaneus F1; Passages 4-6); description: Chromatin IP against H3K9me3 (Abcam 8898)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embryonic fibroblasts; characteristics: Genotype: 129SvJae x C57BL/6; Timepoint: Embryonic day 13.5; Passages: 4-6; description: Chromatin IP against H3K27me3 (Upstate 07-449)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embryonic fibroblasts; characteristics: Genotype: 129SvJae x C57BL/6; Timepoint: Embryonic day 13.5; Passages: 4-6; description: Chromatin IP against H3K36me3 (Abcam 9050)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embryonic fibroblasts; characteristics: Genotype: 129SvJae x C57BL/6; Timepoint: Embryonic day 13.5; Passages: 4-6; description: Chromatin IP against H3K4me3 (Abcam 8580)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embryonic fibroblasts; characteristics: Genotype: 129SvJae x C57BL/6; Timepoint: Embryonic day 13.5; Passages: 4-6; description: Chromatin IP against H3K9me3 (Abcam 8898)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: Embryonic fibroblasts; characteristics: Genotype: 129SvJae x C57BL/6; Timepoint: Embryonic day 13.5; Passages: 4-6; description: Whole cell extract (input DNA)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: ES-derived neural precursor cells; characteristics: Genotype: 129SvJae x C57BL/6; description: Chromatin IP against H3K27me3 (Upstate 07-449)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: ES-derived neural precursor cells; characteristics: Genotype: 129SvJae x C57BL/6; description: Chromatin IP against H3K36me3 (Abcam 9050)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: ES-derived neural precursor cells; characteristics: Genotype: 129SvJae x C57BL/6; description: Chromatin IP against H3K4me3 (Abcam 8580)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: ES-derived neural precursor cells; characteristics: Genotype: 129SvJae x C57BL/6; description: Chromatin IP against H3K9me3 (Abcam 8898)

text: Mus musculus

text: Generic sample from Mus musculus


text: Gene Expression Omnibus

text: live

text: Generic

text: source: ES-derived neural precursor cells; characteristics: Genotype: 129SvJae x C57BL/6; description: Whole cell extract (input DNA)

text: Mus musculus

text: Generic sample from Mus musculus


PolII_ChIP-Seq in K562

text: Gene Expression Omnibus

text: live

text: Generic

text: source: K562; characteristics: Cell type: K562; Growth properties: Suspension; Morphology: lymphoblast; description: ChIP DNA prepared using RNA Pol II antibody

text: Homo sapiens

text: Generic sample from Homo sapiens


Input_DNA in K562

text: Gene Expression Omnibus

text: live

text: Generic

text: source: K562; characteristics: Cell type: K562; Growth properties: Suspension; Morphology: lymphoblast; description: Input DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


PolII_ChIP-Seq in NB4

text: Gene Expression Omnibus

text: live

text: Generic

text: source: NB4; characteristics: Cell type: NB4; Growth properties: Suspension; Morphology: Promyelocytic leukemia; description: ChIP DNA prepared using RNA Pol II antibody

text: Homo sapiens

text: Generic sample from Homo sapiens


Input_DNA in NB4

text: Gene Expression Omnibus

text: live

text: Generic

text: source: NB4; characteristics: Cell type: NB4; Growth properties: Suspension; Morphology: Promyelocytic leukemia; description: Input DNA

text: Homo sapiens

text: Generic sample from Homo sapiens


Wild-type

text: Gene Expression Omnibus

text: live

text: Generic

text: source: wild-type; characteristics: wild-type Ago1 pull-down; description: Argonaute-associated small RNAs were sequenced from wild-type fission yeast.

text: Schizosaccharomyces pombe

text: Generic sample from Schizosaccharomyces pombe


text: Gene Expression Omnibus

text: live

text: Generic

text: source: cid14-deletion; characteristics: cid14-deletion Ago1 pull-down; description: Argonaute-associated small RNAs were sequenced from cid14-deletion fission yeast.

text: Schizosaccharomyces pombe


brain abscess metagenomic

text: Universite de la Mediterranee Marseille

text: live

text: Generic

text: The bacterial flora responsible for brain abscess was analyzed by comparing the culture technique to three techniques using 16S rDNA amplification: (i) direct sequencing (providing a single sequence), (ii) multiple sequencing following cloning (providing around 100 different sequences), and (iii) multiple sequencing via high throughput pyrosequencing using the 454 Life Science-Roche platform. These approaches have been previously used to explore mixed dental, vaginal, pulmonary, and intestinal flora. The 20 case series indicates a tremendously expanding spectrum of bacterial species associated with brain abscess, including 27 species never before described in relation to this condition.

text: uncultured bacterium

text: Generic sample from uncultured bacterium


human lung metagenome

text: Universite de la Mediterranee Marseille

text: live

text: Generic

text: A targeted gene study of pathologic flora in the sputum of CF patients.

text: uncultured bacterium


text: Baylor College of Medicine

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: Human breast cancer cell line MCF-7


text: Mississippi Genome Exploration Laboratory

text: live

text: Generic

text: Unfractionated Loblolly Pine Genomic DNA (Pinus taeda)

text: Pinus taeda

text: Generic sample from Pinus taeda


text: live

text: Generic

text: Highly repetitive Cot fraction of Loblolly Pine Genomic DNA (Pinus taeda)

text: Pinus taeda

text: Generic sample from Pinus taeda


text: live

text: Generic

text: Moderately repetitive Cot fraction of Loblolly Pine Genomic DNA (Pinus taeda)

text: Pinus taeda

text: Generic sample from Pinus taeda


text: live

text: Generic

text: Single/low-copy Cot fraction of Loblolly Pine Genomic DNA (Pinus taeda)

text: Pinus taeda

text: Generic sample from Pinus taeda


text: live

text: Generic

text: Theoretical single-copy Cot fraction of Loblolly Pine Genomic DNA (Pinus taeda)

text: Pinus taeda

text: Generic sample from Pinus taeda


HMP047-454 Sample

text: J. Craig Venter Institute

text: live

text: MIGS.ba

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Enhydrobacter aerosaccus is a gram-negative, non-motile, facultative anaerobic, rod-shaped bacterium that contains gas vacuoles. The bacterium is chemoorganotrophic, able to use respiratory or fermentative metabolism.

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 6: Finished45x;88

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Left arm

characteristic: misc_param: HMP body site

text: skin

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enhydrobacter aerosaccus SK60

text: Enhydrobacter aerosaccus SK60

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-113

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enhydrobacter aerosaccus SK60


characteristic: External Id

text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Astrosporangium hypotensionis

characteristic: organism

text: Generic sample from Astrosporangium hypotensionis

characteristic: title


text: live

text: Generic

text: Rhodobacteraceae bacterium KLH11

characteristic: strain

text: Generic sample from Rhodobacteraceae bacterium KLH11


text: live

text: Generic

text: freshwater metagenome

text: Generic sample from freshwater metagenome


EAVIT

text: live

text: Generic

text: Acanthocheilonema viteae

text: Generic sample from Acanthocheilonema viteae


text: University of Texas, Austin

text: live

text: Generic

text: Larvae from a single cross were reared at 28oC and 32oC for 5 days, until the larvae robustly responded to the settlement cue (crustose coralline algae). Portions of the 28oC culture were then exposed either to the crustose coralline algae, 1 uM GLWamide to induce metamorphosis, or to 32oC, for 4 hours. RNA from larvae from five conditions (28oC culture untreated, exposed to settlement cue, to GLWamide, and to 32oC, plus the culture reared at 32oC) was pooled, normalized using Trimmer kit (Zhulidov et al, 2004), prepared for 454 using a novel method developed in our lab and sequenced.

characteristic: description

text: Acropora millepora

text: Generic sample from Acropora millepora


text: Broad Institute

text: live

text: Generic

text: Brucella ovis F8/05B

characteristic: collaborator sample id

text: broadinstitute.org:bsp.prod.sample:2TGFX

characteristic: lsid

text: Brucella ovis F8/05B

characteristic: sample barcode

text: Genomic DNA

characteristic: sample type

text: Brucella ovis F8/05B Genomic DNA sample 187235.0


characteristic: External Id

text: Broad Institute

text: live

text: Generic

text: Brucella canis CNGB 1324

text: broadinstitute.org:bsp.prod.sample:2TGGH

text: Brucella canis CNGB 1324

text: Genomic DNA

text: CNGB 1324

text: Brucella canis CNGB 1324 Genomic DNA sample 187240.0


text: Broad Institute

characteristic: INSDC center name

text: live

text: Generic

text: Brucella canis F7/05A

text: broadinstitute.org:bsp.prod.sample:2TGGC

text: Brucella canis F7/05A

text: Genomic DNA

text: Brucella canis F7/05A Genomic DNA sample 187238.0


text: Broad Institute

characteristic: INSDC first public

text: live

text: Generic

text: Brucella canis UK10/02

text: broadinstitute.org:bsp.prod.sample:2TGGE

text: Brucella canis UK10/02

text: Genomic DNA

text: Brucella canis UK10/02 Genomic DNA sample 187239.0


text: Broad Institute

characteristic: INSDC last update

text: live

text: Generic

text: Brucella abortus CNGB 752

text: broadinstitute.org:bsp.prod.sample:2TGFZ

text: Brucella abortus CNGB 752

text: Genomic DNA

text: CNGB 752

text: Brucella abortus CNGB 752 Genomic DNA sample 187241.0


text: Broad Institute

characteristic: INSDC secondary accession

text: live

text: Generic

text: Brucella abortus CNGB 1432

text: broadinstitute.org:bsp.prod.sample:2TGG2

text: Brucella abortus CNGB 1432

text: Genomic DNA

text: CNGB 1432

text: Brucella abortus CNGB 1432 Genomic DNA sample 187242.0


name: PRJNA172065.Anopheles gambiae 122 male testes

text: Broad Institute

text: live

characteristic: INSDC status

text: Generic

text: mosquito metagenome

text: Anopheles gambiae 122 male testes

characteristic: sample name

text: Generic sample from mosquito metagenome


name: PRJNA172065.Anopheles gambiae 125 femael ovaries

text: Broad Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: mosquito metagenome

text: Anopheles gambiae 125 femael ovaries

text: Generic sample from mosquito metagenome


name: PRJNA172065.Anopheles gambiae 121 male testes

text: Broad Institute

text: live

text: Generic

characteristic: SRA accession

text: mosquito metagenome

characteristic: organism

text: Anopheles gambiae 121 male testes

text: Generic sample from mosquito metagenome


name: PRJNA172065.Anopheles gambiae 122 male MAGs

text: Broad Institute

text: live

text: Generic

text: mosquito metagenome

text: Anopheles gambiae 122 male MAGs

text: Generic sample from mosquito metagenome

characteristic: title


name: PRJNA172065.Anopheles gambiae 18 male gut

text: Broad Institute

text: live

text: Generic

text: mosquito metagenome

text: Anopheles gambiae 18 male gut

text: Generic sample from mosquito metagenome


name: PRJNA172065.Anopheles gambiae 18 male MAGs

text: Broad Institute

text: live

text: Generic

text: mosquito metagenome

text: Anopheles gambiae 18 male MAGs

text: Generic sample from mosquito metagenome


text: Institute for Genome Sciences University of MD School of Medicine

text: live

text: Generic

text: mouth

characteristic: isolation-source

text: Homo sapiens

characteristic: nat-host

text: Streptococcus mitis SK321

characteristic: strain

text: Generic sample from Streptococcus mitis SK321


text: live

text: Generic

text: mouth

text: Homo sapiens

text: Streptococcus mitis SK564

text: Generic sample from Streptococcus mitis SK564


text: live

text: Generic

text: mouth

text: Homo sapiens

text: Streptococcus mitis SK597

text: Generic sample from Streptococcus mitis SK597


text: live

text: Generic

text: Streptomyces sp. H668

text: Generic sample from Streptomyces sp. H668


control limb

text: University of Kentucky

text: live

text: Generic

text: The day 0 pools were created using only the right limbs of 9 different individuals that were collected within minutes following limb amputation.

characteristic: description

text: Ambystoma mexicanum

text: Generic sample from Ambystoma mexicanum


text: University of Kentucky

text: live

text: Generic

text: NR (right) limbs were collected approximately 1 mm proximal to the amputation plane 5 days post amputation.

text: Ambystoma mexicanum

text: Generic sample from Ambystoma mexicanum


text: University of Kentucky

text: live

text: Generic

text: DL (left) limbs were collected approximately 1 mm proximal to the amputation plane 5 days post amputation.

text: Ambystoma mexicanum

text: Generic sample from Ambystoma mexicanum


text: University of Kentucky

text: live

text: Generic

text: NR (right) limbs were collected approximately 1 mm proximal to the amputation plane 14 days post amputation.

text: Ambystoma mexicanum

text: Generic sample from Ambystoma mexicanum


text: University of Kentucky

text: live

text: Generic

text: DL (left) limbs were collected approximately 1 mm proximal to the amputation plane 14 days post amputation.

text: Ambystoma mexicanum

text: Generic sample from Ambystoma mexicanum


FUZZ

text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Thioalkalivibrio sp. HL-EbGR7

text: Thioalkalivibrio sulfidiphilus HL-EbGr7

text: Generic sample from Thioalkalivibrio sulfidophilus HL-EbGr7


FUZY

text: live

text: Generic

text: Anaerocellum thermophilum DSM 6725

text: Caldicellulosiruptor bescii DSM 6725

text: DSM 6725

text: Generic sample from Caldicellulosiruptor bescii DSM 6725

text: type strain of Caldicellulosiruptor bescii

characteristic: type material


characteristic: External Id

text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 1.1.03.24

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Listeria grayi DSM20601

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 5: Non-contiguous Finished36.05x;6

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Listeria grayi DSM 20601

text: Listeria grayi DSM 20601

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: DSM 20601, ATCC 19120

text: Homo sapiens

characteristic: specific host

text: DSM 20601

text: MIGS Cultured Bacterial/Archaeal sample from Listeria grayi DSM 20601

text: type strain of Listeria grayi


characteristic: External Id

text: Università degli Studi di Verona

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Berries of Vitis vinifera cv Corvina (clone 48) were harvested at 6 different time-points from veraison to withering over the curse of the 2005 growing season from an experimental vineyard in the Verona Province (San Floriano, Verona, Italy). 30 clusters were collected for each sampling time-point, and 12 berries were sampled from each cluster to form a pool for each time-point. Total RNA was extracted according to Rezaian, M.A. & Krake (Rezaian, M.A. & Krake. 1987) 25 and equal quantities of total RNA were pooled together for a total of 300 ug of total RNA.

characteristic: description

text: Vitis vinifera

characteristic: organism

text: Generic sample from Vitis vinifera

characteristic: title


text: Center for Comparative Genomics and Bioinformatics, Pennsylvania State University

text: live

text: Generic

text: planktonic microbial community cDNA from Central North Pacific Gyre, 25 m depth

text: marine metagenome

text: Generic sample from marine metagenome


text: live

text: Generic

text: planktonic microbial community cDNA from Central North Pacific Gyre, 125m5 m depth

text: marine metagenome

text: Generic sample from marine metagenome


ZOVIpool

text: University of Gothenburg

text: live

text: Generic

text: Pool of mRNA extracted from Zoarces viviparus catched along the Swedish west-coast. Please refer to Kristiansson et al 2009 for full description.

text: Zoarces viviparus

text: Generic sample from Zoarces viviparus


text: CNRS

text: live

text: Generic

text: Small (18-30 nt) RNAs from hand-dissected ovaries of ago3/TM6B, Tb flies. Oxidized by periodate in the presence of boric acid.

text: Drosophila melanogaster

text: Generic sample from Drosophila melanogaster


text: CNRS

text: live

text: Generic

text: Small (18-30 nt) RNAs from hand-dissected ovaries of ago3t2/ago3t3 flies. Oxidized by periodate in the presence of boric acid.

text: Drosophila melanogaster


text: CNRS

text: live

text: Generic

text: Small (18-30 nt) RNAs from hand-dissected ovaries of aub/CyO flies. Oxidized by periodate in the presence of boric acid.

text: Drosophila melanogaster


text: CNRS

text: live

text: Generic

text: Small (18-30 nt) RNAs from hand-dissected ovaries of aubHN2/aubQC42 flies. Oxidized by periodate in the presence of boric acid.

text: Drosophila melanogaster


text: CNRS

text: live

text: Generic

text: Small (18-30 nt) RNAs from hand-dissected ovaries of ago3/TM6B, Tb flies, immuno-precipitated with anti-Aub antibody (described in Nishida et al. (2007) RNA 13(11):1911; PMID 17872506).

text: Drosophila melanogaster


text: CNRS

text: live

text: Generic

text: Small (18-30 nt) RNAs from hand-dissected ovaries of ago3/TM6B, Tb flies, immuno-precipitated with anti-Piwi antibody (described in Brennecke et al. (2007) Cell 128(6):1089; PMID 17346786).

text: Drosophila melanogaster


text: CNRS

text: live

text: Generic

text: Small (18-30 nt) RNAs from hand-dissected ovaries of ago3t2/ago3t3 flies, immuno-precipitated with anti-Aub antibody (described in Nishida et al. (2007) RNA 13(11):1911; PMID 17872506).

text: Drosophila melanogaster


text: CNRS

text: live

text: Generic

text: Small (18-30 nt) RNAs from hand-dissected ovaries of ago3t2/ago3t3 flies, immuno-precipitated with anti-Piwi antibody (described in Brennecke et al. (2007) Cell 128(6):1089; PMID 17346786).

text: Drosophila melanogaster


text: CNRS

text: live

text: Generic

text: Small (18-30 nt) RNAs from hand-dissected ovaries of ago3/TM6B, Tb flies, immuno-precipitated with anti-Ago3 antibody (described in Brennecke et al. (2007) Cell 128(6):1089; PMID 17346786).

text: Drosophila melanogaster


text: CNRS

text: live

text: Generic

text: Small (18-30 nt) RNAs from hand-dissected ovaries of Oregon R flies. Oxidized by periodate in the presence of boric acid.

text: Drosophila melanogaster


text: Baylor College of Medicine

text: live

text: MIGS.ba

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Gardnerella vaginalis ATCC 14019

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 5: Non-contiguous Finished88.88x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Gardnerella vaginalis ATCC 14019

text: Gardnerella vaginalis 317, ATCC 14019

text: Reference Genome

text: not determined

text: 454-GS-FLX, 454-Paired-end

text: ATCC 14019

text: Homo sapiens

text: ATCC 14019

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Gardnerella vaginalis ATCC 14019


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0-01162009

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: culture-collection

text: Corynebacterium seminale ATCC 51866

characteristic: description

text: Level 2: High-Quality Draft54.17x;142

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

characteristic: project name

text: Reference Genome

text: not determined

text: 454, Sanger, Illumina

characteristic: sequencing method

characteristic: sop

text: ATCC 51866

text: Homo sapiens

characteristic: specific host

text: ATCC 51866

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium glucuronolyticum ATCC 51866

text: type strain of Corynebacterium seminale

characteristic: type material


text: Baylor College of Medicine

text: live

text: MIGS.ba

text: Newbler v. 1.1.03.24

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Enterococcus faecalis ATCC 29200

characteristic: estimated size

characteristic: feature

text: Level 3: Improved-High-Quality Draft45.81x;123

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis ATCC 29200

characteristic: organism

text: Enterococcus faecalis ATCC 29200

text: Reference Genome

text: not determined

text: 454, Sanger, Illumina

text: ATCC 29200

text: Homo sapiens

text: ATCC 29200

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis ATCC 29200

characteristic: title


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.3-10192009

text: not determined

text: Clostridium difficile NAP07

characteristic: description

text: terrestrial biome [ENVO:00000446]

characteristic: environment (biome)

text: human-associated habitat [ENVO:00009003]

characteristic: environment (feature)

text: biological product [ENVO:02000043]

characteristic: environment (material)

text: Level 2: High-Quality Draft105.7x;100

text: not determined

characteristic: investigation type

text: not determined

text: not determined

text: not determined

text: not determined

text: not determined

text: Clostridioides difficile NAP07

text: Clostridium difficile NAP07

characteristic: project name

text: Reference Genome

text: not determined

characteristic: sequencing method

characteristic: sop

text: BEI HM-88

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Clostridium difficile NAP07


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v. 2.3-10192009

characteristic: assembly

text: not determined

characteristic: collection date

text: Clostridium difficile NAP08

text: terrestrial biome [ENVO:00000446]

text: biological product [ENVO:02000043]

characteristic: estimated size

text: Level 2: High-Quality Draft94.44x;111

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Clostridioides difficile NAP08

characteristic: organism

text: Clostridium difficile NAP08

text: Reference Genome

text: not determined

text: BEI HM-89

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Clostridium difficile NAP08

characteristic: title


text: Baylor College of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.0-Eclipse

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: culture-collection

text: Lactobacillus hilgardii ATCC 8290

characteristic: description

characteristic: feature

text: Level 3: Improved-High-Quality Draft78.96x;233

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: not determined

text: not determined

text: Lentilactobacillus hilgardii DSM 20176 = ATCC 8290

text: Lactobacillus hilgardii ATCC 8290

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina, Sanger

characteristic: sequencing method

characteristic: sop

text: ATCC 8290

text: Homo sapiens

text: ATCC 8290

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus hilgardii ATCC 8290

text: type strain of Lactobacillus hilgardii

characteristic: type material


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v. 1.1.03.24

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Lactobacillus buchneri ATCC 11577

characteristic: estimated size

text: Level 2: High-Quality Draft63x;165

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Lentilactobacillus buchneri ATCC 11577

characteristic: organism

text: Lactobacillus buchneri ATCC 11577

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina, Sanger

text: ATCC 11577

text: Homo sapiens

characteristic: specific host

text: ATCC 11577

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus buchneri ATCC 11577

characteristic: title


text: Baylor College of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.0-Eclipse

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: culture-collection

text: Lactobacillus acidophilus ATCC 4796

characteristic: description

characteristic: feature

text: Level 2: High-Quality Draft35.34x;69

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: not determined

text: not determined

text: Lactobacillus acidophilus ATCC 4796

text: Lactobacillus acidophilus ATCC 4796

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina, Sanger

characteristic: sequencing method

characteristic: sop

text: ATCC 4796

text: Homo sapiens

text: ATCC 4796

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus acidophilus ATCC 4796


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v. 1.1.03.24

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Lactobacillus johnsonii ATCC 33200

characteristic: estimated size

text: Level 5: Non-contiguous Finished103.24x;52

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Lactobacillus johnsonii ATCC 33200

characteristic: organism

text: Lactobacillus johnsonii ATCC 33200

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina, Sanger

text: ATCC 33200, DSM 10533

text: Homo sapiens

characteristic: specific host

text: ATCC 33200

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus johnsonii ATCC 33200

text: type strain of Lactobacillus johnsonii

characteristic: type material


text: Baylor College of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.0-Eclipse

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: culture-collection

text: Lactobacillus fermentum ATCC 14931

characteristic: description

characteristic: feature

text: Level 3: Improved-High-Quality Draft56.45x;145

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: not determined

text: not determined

text: Limosilactobacillus fermentum ATCC 14931

text: Lactobacillus fermentum ATCC 14931

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina, Sanger

characteristic: sequencing method

characteristic: sop

text: ATCC 14931, NCIB 11840

text: Homo sapiens

text: ATCC 14931

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus fermentum ATCC 14931

characteristic: title

text: type strain of Lactobacillus fermentum


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v. 2.0.01.12

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Atopobium vaginae DSM 15829

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

text: Level 3: Improved-High-Quality Draft21.65x;61

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: vagina

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Fannyhessea vaginae DSM 15829

characteristic: organism

text: Atopobium vaginae DSM 15829

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina, Sanger

text: ATCC BAA-55, DSM 15829, CCUG 38953, CIP 106431

text: Homo sapiens

characteristic: specific host

text: DSM 15829

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Atopobium vaginae DSM 15829

text: type strain of Atopobium vaginae

characteristic: type material


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0-01162009

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: culture-collection

characteristic: description

characteristic: feature

text: Level 2: High-Quality Draft44.79x;178

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

text: not determined

text: not determined

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, Sanger

characteristic: sequencing method

characteristic: sop

text: DSM 44291, CCUG 37336, DMMZ 1944

text: Homo sapiens

text: DSM 44291

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium lipophiloflavum DSM 44291

characteristic: title

text: type strain of Corynebacterium lipophiloflavum


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v. 2.0-01162009

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Lactobacillus antri DSM 16041

characteristic: estimated size

text: Level 2: High-Quality Draft42.47x;76

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: Stomach

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Limosilactobacillus antri DSM 16041

characteristic: organism

text: Lactobacillus antri DSM 16041

text: Reference Genome

text: not determined

text: 454-GS-FLX, Sanger, Illumina

text: DSM 16041, CCUG 48456, LMG 22111

text: Homo sapiens

characteristic: specific host

text: DSM 16041

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus antri DSM 16041

text: type strain of Lactobacillus antri

characteristic: type material


text: Baylor College of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0-01162009

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Lactobacillus rhamnosus

characteristic: description

characteristic: feature

text: Level 2: High-Quality Draft48.57x;162

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: not determined

text: not determined

text: Lacticaseibacillus rhamnosus LMS2-1

text: Lactobacillus rhamnosus LMS2-1

characteristic: project name

text: Reference Genome

text: not determined

text: 454, Illumina, Sanger

characteristic: sequencing method

characteristic: sop

text: BEI HM-106

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus rhamnosus LMS2-1

characteristic: title


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v. 2.0-01162009

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Lactobacillus ruminus ATCC 25644

characteristic: estimated size

text: Level 3: Improved-High-Quality Draft47.62x;58

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: gastrointestinal tract

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Ligilactobacillus ruminis ATCC 25644

characteristic: organism

text: Lactobacillus ruminis E 194e, ATCC 25644

text: Reference Genome

text: not determined

text: 454-GS-FLX, Sanger, Illumina

text: ATCC 25644

text: Homo sapiens

characteristic: specific host

text: ATCC 25644

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus ruminis ATCC 25644


PSACM

characteristic: External Id

text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Streptococcus agalactiae str. Camel

text: Camel

text: Generic sample from Streptococcus agalactiae str. Camel

characteristic: title


text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v. 2.0-01162009

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Lactobacillus ultunensis DSM 16047

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft45.18x;116

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: Stomach

text: not determined

text: not determined

text: Lactobacillus ultunensis DSM 16047

text: Lactobacillus ultunensis DSM 16047

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, Sanger

characteristic: sequencing method

characteristic: sop

text: DSM 16047, CCUG 48460, CIP 109908, LMG 22117

text: Homo sapiens

text: DSM 16047

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus ultunensis DSM 16047

text: type strain of Lactobacillus ultunensis

characteristic: type material


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.0-Eclipse

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Lactobacillus vaginalis ATCC 49540

text: Level 2: High-Quality Draft90.9x;202

text: not determined

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Limosilactobacillus vaginalis DSM 5837 = ATCC 49540

characteristic: organism

text: Lactobacillus vaginalis ATCC 49540

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina, Sanger

text: ATCC 49540, NCTC 12197

text: Homo sapiens

characteristic: specific host

text: ATCC 49540

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus vaginalis ATCC 49540

characteristic: title

text: type strain of Lactobacillus vaginalis


text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v. 2.0.0-Eclipse

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Proteus mirabilis ATCC 29906

characteristic: description

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft36.6x;115

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: not determined

text: not determined

text: Proteus mirabilis ATCC 29906

text: Proteus mirabilis ATCC 29906

characteristic: project name

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina, Sanger

characteristic: sequencing method

characteristic: sop

text: ATCC 29906, CDC PR 14

text: Homo sapiens

text: ATCC 29906

text: MIGS Cultured Bacterial/Archaeal sample from Proteus mirabilis ATCC 29906

text: type strain of Proteus mirabilis

characteristic: type material


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 1.1.02.12

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Level 3: Improved-High-Quality Draft28.49x;15

text: not determined

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: Vaginal

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

characteristic: organism

text: Reference Genome

text: not determined

text: ATCC 33861, CDC E7288, JCM 1277, NCTC 11386

text: Homo sapiens

characteristic: specific host

text: ATCC 33861

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Sphingobacterium spiritivorum ATCC 33861

characteristic: title

text: type strain of Sphingobacterium spiritivorum


text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v. 2.0-01162009

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Staphylococcus epidermidis

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft47.22x;115

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

text: skin

text: not determined

text: not determined

text: Staphylococcus epidermidis BCM-HMP0060

text: Staphylococcus epidermidis BCM-HMP0060

characteristic: project name

text: Reference Genome

text: not determined

text: 454, Sanger, Illumina

characteristic: sequencing method

characteristic: sop

text: BEI HM-140

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Staphylococcus epidermidis BCM-HMP0060


characteristic: External Id

text: Broad Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: human gut metagenome

characteristic: organism

characteristic: sample name

text: Generic sample from unclassified Bacteria (miscellaneous)


text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v2.3-04192010

characteristic: assembly

text: not determined

characteristic: collection date

text: Lactobacillus reuteri SD2112

characteristic: description

text: terrestrial biome [ENVO:00000446]

characteristic: environment (biome)

text: human-associated habitat [ENVO:00009003]

characteristic: environment (feature)

text: biological product [ENVO:02000043]

characteristic: environment (material)

characteristic: estimated size

text: Level 6: Finished63x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: investigation type

text: not determined

text: not determined

characteristic: lat lon

text: Intestinal tract

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Limosilactobacillus reuteri SD2112

text: Lactobacillus reuteri SD2112, ATCC 55730

text: Reference Genome

text: not determined

text: ATCC 55730

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus reuteri SD2112

characteristic: title


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 1.1.03.19

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Escherichia coli 83972

characteristic: feature

text: Level 5: Non-contiguous Finished30.16x;159

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: Urinary tract

text: not determined

text: not determined

text: Escherichia coli 83972

characteristic: organism

text: Escherichia coli 83972

characteristic: project name

text: Reference Genome

text: not determined

text: 454, Sanger, Illumina

characteristic: sequencing method

characteristic: sop

text: BEI HM-50

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Escherichia coli 83972


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Newbler v. 1.1.02.15

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Enterococcus faecalis TX1322

characteristic: description

characteristic: estimated size

text: Level 3: Improved-High-Quality Draft27.65x;116

characteristic: finishing strategy (depth of coverage)

text: not determined

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX1322

text: Enterococcus faecalis TX1322

text: Reference Genome

text: not determined

text: 454-GS-FLX, Illumina, Sanger

text: BEI HM-202

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX1322

characteristic: title


text: Baylor College of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 2.0.0-Eclipse

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Lactobacillus gasseri JVV03

characteristic: feature

text: Level 3: Improved-High-Quality Draft78.89x;10

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

text: biological product [ENVO:02000043]

characteristic: material

text: Vaginal

text: not determined

text: not determined

text: Lactobacillus paragasseri JV-V03

characteristic: organism

text: Lactobacillus gasseri JV-V03

characteristic: project name

text: Reference Genome

text: not determined

text: BEI HM-104

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus gasseri JV-V03