text: Kumamoto University

text: live

text: Generic

text: Embryonic stem cell (feeder free)

characteristic: cell type

text: ES cells KAB6 (Albino B6)

characteristic: cell-line

text: Mus musculus

text: male

characteristic: strain

text: EGTC Gene Trap Library (Mus musculus B6(Cg)-Tyr<c-2J>/JCard)


status: PUBLIC

characteristic: External Id

text: Kumamoto University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Embryonic stem cell (feeder free)

tag: attribute

text: ES cells KTPU8 (TT2 sub line)

text: Mus musculus

characteristic: organism

text: male

characteristic: sex

text: EGTC Gene Trap Library (Mus musculus F1(B6xCBA))

characteristic: title


text: Bose Institute

text: live

text: Generic

text: Raghusail

characteristic: cultivar

text: 3 day old seedling

characteristic: dev-stage

text: Oryza sativa

text: Oryza sativa cv. Raghusail 3 day old seedling library


text: Montana State University

text: live

text: Generic

text: This library was prepared from DNA extracted using gentle lysis procedures from the 65 deg C site at Mushroom Spring Mat, Yellowstone National Park, WY (Lat_Lon = 44.5387 N 110.7980 W). High molecular weight DNA was partially digested using HINDIII and size selected to target molecules on the order of 100 kpb in length. DNA was then ligated to the pCC1BAC vector and transformed into DH10B Escherichia coli cells. Clones were end sequenced using the Sanger method and the T7 and M13R primers.

characteristic: description

text: uncultured bacterium

text: M65 Mushroom Spring microbial mat library


text: Montana State University

text: live

text: Generic

text: This library was prepared from DNA extracted using gentle lysis procedures from the 60 deg C site at Mushroom Spring Mat, Yellowstone National Park, WY (Lat_Lon = 44.5387 N 110.7980 W). High molecular weight DNA was partially digested with HINDIII and size selected to target molecules on the order of 100 kpb in length. DNA was then ligated to the pECBAC1 vector and transformed into DH10B Escherichia coli cells. Clones were end sequenced using the Sanger method and the T7 and M13R primers.

text: uncultured bacterium

text: M60 Mushroom Spring microbial mat library


text: College of Agronomy, Northwest A&F University

text: live

text: Generic

text: leaf

characteristic: organ

text: Psathyrostachys huashanica

text: PstI

text: EcoRI

text: subclone of Ns genome of Psathyrostachys huashanica library

text: Plasmid

characteristic: vector


text: Bose Institute

text: live

text: Generic

text: Bangladeshi Patnai

text: 3 day old seedling

text: Oryza sativa

text: Oryza sativa cv. Bangladeshi Patnai 3 day old seedling library


text: Bose Institute

text: live

text: Generic

text: CO 1

text: Mature Leaf

text: Carica papaya

text: Carica papaya CO 1 mature leaf library


Kananaskis

text: University of Alberta

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: This sample was generated by pooling approximate equal amounts of gDNA from 10 adult mountain pine beetles (MPB) from Kananaskis, Alberta. Individual beetle was collected in a 2mL tube, flash-frozen in Liquid Nitrogen and stored at -80C until extraction. The DNA from each beetle was extracted individually using CTAB-chloroform extraction method.

text: Dendroctonus ponderosae

text: D. ponderosae genomic DNA - Kananaskis, AB


Cypress Hills

characteristic: External Id

text: University of Alberta

text: live

text: Generic

text: This sample was generated by pooling approximate equal amounts of gDNA from 14 adult mountain pine beetles (MPB) from Cypress Hills, Alberta. Individual beetle was collected in a 1.5mL tube, flash-frozen in Liquid Nitrogen and stored at -80C until extraction. The DNA from each beetle was extracted individually using CTAB-chloroform extraction method.

text: Dendroctonus ponderosae

text: D. ponderosae genomic DNA - Cypress Hills, AB


Valhalla

text: University of Alberta

characteristic: INSDC center name

text: live

text: Generic

text: This sample was generated by pooling approximate equal amounts of gDNA from 11 adult mountain pine beetles (MPB) from Valhalla, British Columbia. The DNA of each beetle was extracted individually using CTAB-chloroform extraction method.

text: Dendroctonus ponderosae

text: D. ponderosae genomic DNA - Valhalla, BC


Houston

text: University of Alberta

characteristic: INSDC first public

text: live

text: Generic

text: This sample was generated by pooling approximate equal amounts of gDNA from 9 adult mountain pine beetles (MPB) from Houston, British Columbia. The DNA of each beetle was extracted individually using CTAB-chloroform extraction method.

text: Dendroctonus ponderosae

text: D. ponderosae genomic DNA - Houston, BC


text: Dunnlab at Brown University, Department of Ecology and Evolutionary Biology

characteristic: INSDC last update

text: live

text: Generic

text: mRNA directly extracted from youngest nectophores from Nanomia bijuga specimen #1

text: nectophore

characteristic: dev stage

text: Nanomia bijuga

text: Monterey Bay

characteristic: sample source

text: Nanomia bijuga nectophores


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: mRNA directly extracted from youngest nectophores from Nanomia bijuga specimen #2

text: Nanomia bijuga

text: Monterey Bay

text: Generic sample from Nanomia bijuga


text: live

text: Generic

text: mRNA directly extracted from youngest gastrozooids from Nanomia bijuga specimen #2

text: Nanomia bijuga

characteristic: organism

text: Monterey Bay

text: Generic sample from Nanomia bijuga

characteristic: title


text: live

text: Generic

text: mRNA directly extracted from youngest nectophores from Nanomia bijuga specimen #3

text: Nanomia bijuga

text: Monterey Bay

text: Generic sample from Nanomia bijuga


text: live

text: Generic

text: mRNA directly extracted from youngest gastrozooids from Nanomia bijuga specimen #3

text: Nanomia bijuga

text: Monterey Bay

text: Generic sample from Nanomia bijuga


Twist ChIP-seq

text: California Institute of Technology

text: live

text: Generic

text: Twist ChIP-seq sample. Chromatin was prepared from 5g of yw embryos 1-3h old. Rat anti-Twist antibody was used in the ChIP.

text: Drosophila melanogaster

text: Twist ChIP-seq


Twist ChIP-seq input control

text: California Institute of Technology

text: live

text: Generic

text: Sonicated and sequenced input control DNA sample from D. melanogaster embryos 1-3. The input sample was of the same pool as Twist ChIP-seq and was prepared at the same time.

text: Drosophila melanogaster

text: Twist ChIP-seq input control


text: Friedman, Computer Scince, Hebrew University

text: live

text: Generic

text: Caloric Restriction

characteristic: diet

text: Mus musculus

text: Sperm cells

characteristic: strain

text: sperm cytosine methylation caloric restriction diet B43.1


text: live

text: Generic

text: Control

text: Mus musculus

text: Sperm cells

text: sperm cytosine methylation control diet B43.2


text: live

text: Generic

text: Control

text: Mus musculus

text: Sperm cells

text: sperm cytosine methylation control diet B87.1


text: live

text: Generic

text: Low Protein

text: Mus musculus

text: Sperm cells

text: sperm cytosine methylation low protein diet B87.2


text: EMBL Grenoble

text: live

text: Generic

text: Mus musculus

text: total testes

text: testes

characteristic: tissue


Dorsal ChIP-seq

text: California Institute of Technology

text: live

text: Generic

text: Dorsal ChIP-seq sample. Chromatin was prepared from 5g of yw embryos 1-3h old.

characteristic: description

text: Drosophila melanogaster

text: Dorsal ChIP-seq


Dorsal ChIP-seq input control

text: California Institute of Technology

characteristic: INSDC secondary accession

text: live

text: Generic

text: Sonicated and sequenced input control DNA sample from D. melanogaster embryos 1-3. The input sample was of the same pool as Dorsal ChIP-seq and was prepared at the same time.

text: Drosophila melanogaster

text: Dorsal ChIP-seq input control


text: Genetics, CNRC-IRB

text: live

text: Generic

characteristic: SRA accession

characteristic: cell line

text: Drosophila melanogaster

text: S2 cell culture, GFP dsRNA

text: GFP dsRNA

characteristic: treatment

text: 6 days

characteristic: treatment time


characteristic: External Id

text: Genetics, CNRC-IRB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Drosophila melanogaster

text: S2 cell culture, eIF4AIII dsRNA

text: eIF4AIII dsRNA

text: 6 days


text: Genetics, CNRC-IRB

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Drosophila melanogaster

text: S2 cell culture, MAGO dsRNA

text: MAGO dsRNA

text: 6 days


text: Broad Institute of Harvard and MIT

text: live

text: Generic

characteristic: NCBI submission package

text: control

characteristic: agent

text: secondary, inducible MEFs

characteristic: cell type

text: Mus musculus

characteristic: organism

text: Uninduced MEFs

text: 129/SvJ x C57/B6 hybrid


text: Broad Institute of Harvard and MIT

text: live

text: Generic

text: doxycycline

characteristic: cell division cohort

text: secondary, inducible MEFs

text: Mus musculus

text: Doxycycline-induced MEFs

text: 129/SvJ x C57/B6 hybrid

characteristic: strain

characteristic: title


Mouse neonate dermis EDGE

text: Institute of Molecular and Cell Biology (A*STAR)

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: EDGE libraries were generated from neonate dermis (P3.5) RNA from five C57BL/6J non-mutant and five C57BL/6J mutant (Mc1r e/e) animals. One library per animal.

characteristic: description

text: Mus musculus

text: Mouse neonate dermis EDGE


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Phanerochaete carnosa HHB-10118-sp mycelia grown on mixed softwood with B3

text: mycelium

text: grown separately on 3 softwoods (Balsam fir, Lodgepole pine, White spruce) with B3 buffer.

characteristic: in vivo conditions

text: standard

characteristic: library description

text: standard

characteristic: library type

text: Phanerochaete carnosa HHB-10118-sp

text: Generic sample from Phanerochaete carnosa HHB-10118-sp


293T UBF ChIP-seq

characteristic: External Id

text: Case Western Reserve University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Source: HEK293T cells

text: Homo sapiens

text: ChIP-seq of UBF in HEK293T cells


Jatropha 454 Transcriptome data

text: SRM University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Jatropha curcas

text: De novo assembly and transcriptome analysis of five major tissues of Jatropha curcas L. using GS FLX Titanium Platform of 454 pyrosequencing


brain tissue

text: Hiberna Corp

text: live

text: Generic

characteristic: NCBI submission package

text: Ictidomys tridecemlineatus

text: brain tissue


text: University of Genoa

text: live

text: Generic

text: Bacterial 16SrDNA read sequences (V6 hypervariable region) from Continuous Plankton Recorder (CPR) samples collected in the North Sea

text: metagenomes

characteristic: organism

text: Bacterial 16SrDNA read sequences from CPR samples


heart tissue

text: Hiberna Corp

text: live

text: Generic

text: Ictidomys tridecemlineatus

text: heart tissue


kidney tissue

text: Hiberna Corp

text: live

text: Generic

text: Ictidomys tridecemlineatus

text: kidney tissue


liver tissue

text: Hiberna Corp

text: live

text: Generic

text: Ictidomys tridecemlineatus

text: liver tissue


Default sample

text: University of Genoa

text: live

text: Generic

text: metagenomes


neonatal tissue

text: Hiberna Corp

text: live

text: Generic

text: Ictidomys tridecemlineatus

text: neonatal tissue


text: Jiangsu Key Laboratory of Neuroregeneration, Nantong University

text: live

text: Generic

text: Rattus norvegicus

text: sciatic nerve resection

characteristic: protocol

text: dorsal root ganglia (DRGs)

text: Sprague-Dawley (SD)

characteristic: time post surgery

text: dorsal root ganglia (DRGs)

characteristic: tissue

text: DRG_sciatic nerve resection_0h

text: 180-220 g

characteristic: weight


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Rattus norvegicus

text: sciatic nerve resection

text: dorsal root ganglia (DRGs)

text: Sprague-Dawley (SD)

characteristic: strain

text: dorsal root ganglia (DRGs)

text: DRG_sciatic nerve resection_1d

characteristic: title

text: 180-220 g


text: live

text: Generic

text: Rattus norvegicus

text: sciatic nerve resection

text: dorsal root ganglia (DRGs)

text: Sprague-Dawley (SD)

text: dorsal root ganglia (DRGs)

text: DRG_sciatic nerve resection_4d

text: 180-220 g


text: live

text: Generic

text: Rattus norvegicus

text: sciatic nerve resection

text: dorsal root ganglia (DRGs)

text: Sprague-Dawley (SD)

text: dorsal root ganglia (DRGs)

text: DRG_sciatic nerve resection_7d

text: 180-220 g


text: live

text: Generic

text: Rattus norvegicus

text: sciatic nerve resection

text: dorsal root ganglia (DRGs)

text: Sprague-Dawley (SD)

text: dorsal root ganglia (DRGs)

text: DRG_sciatic nerve resection_14d

text: 180-220 g


text: Ruvkun, Molecular Biology, Massachusetts General Hospital

text: live

text: Generic

text: adult

characteristic: developmental stage

text: Caenorhabditis elegans

text: whole worms

text: wild type, adult


characteristic: External Id

text: live

text: Generic

text: adult

text: Caenorhabditis elegans

text: whole worms

text: mut-16(pk710) I

text: mut-16(pk710), adult


characteristic: INSDC center name

text: live

text: Generic

text: adult

text: Caenorhabditis elegans

text: whole worms

text: mut-16(mg461) I

text: mut-16(mg461), adult


characteristic: INSDC first public

text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: embryos

text: wild type, embryo


characteristic: INSDC last update

text: live

text: Generic

text: embryo

text: Caenorhabditis elegans

text: embryos

text: mut-16(pk710) I

text: mut-16(pk710), embryo


293T RPA116 ChIP-seq

text: Case Western Reserve University

text: live

characteristic: INSDC status

text: Generic

text: Source: HEK293T cells

characteristic: description

text: Homo sapiens

text: ChIP-seq of RPA116 (POLR1B) in HEK293T cells


293T input

text: Case Western Reserve University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Source: HEK293T input cells

text: Homo sapiens

text: Input DNA from HEK293T cells


K562 UBF ChIP-seq

text: Case Western Reserve University

text: live

text: Generic

text: Source: K562 cells

text: Homo sapiens

characteristic: organism

text: ChIP-seq of UBF in K562 cells


K562 input

text: Case Western Reserve University

text: live

text: Generic

text: Source: K562 cells

text: Homo sapiens

text: Input DNA from K562 cells


text: Ron W. Davis, Department of Biochemistry, Stanford Genome Technology Center

text: live

text: Generic

text: Homo sapiens

text: Human Liver Total RNA (Ambion)

text: liver


text: live

text: Generic

text: Homo sapiens

text: Human Skeletal Muscle Total RNA (Ambion)

text: muscle


text: Broad Institute of Harvard and MIT

text: live

text: Generic

text: control

characteristic: agent

text: Abcam

characteristic: antibody vendor

text: MEFControl

characteristic: cell division cohort

text: secondary, inducible MEFs

characteristic: cell type

characteristic: chip antibody

text: Mus musculus

text: Uninduced MEFs

text: 129/SvJ x C57/B6 hybrid


text: Broad Institute of Harvard and MIT

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Doxycycline

text: Abcam

text: secondary, inducible MEFs

text: Mus musculus

text: Doxycycline-induced MEFs

text: 129/SvJ x C57/B6 hybrid

characteristic: strain


characteristic: External Id

text: Broad Institute of Harvard and MIT

text: live

text: Generic

text: control

text: Millipore

text: MEFControl

text: secondary, inducible MEFs

text: Mus musculus

text: Uninduced MEFs

text: 129/SvJ x C57/B6 hybrid

characteristic: title


text: Broad Institute of Harvard and MIT

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Doxycycline

text: Millipore

text: secondary, inducible MEFs

text: Mus musculus

text: Doxycycline-induced MEFs

text: 129/SvJ x C57/B6 hybrid


text: Broad Institute of Harvard and MIT

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: control

text: MEFControl

text: secondary, inducible MEFs

text: Mus musculus

text: Uninduced MEFs

text: 129/SvJ x C57/B6 hybrid


text: Broad Institute of Harvard and MIT

text: live

text: Generic

characteristic: NCBI submission model

text: Doxycycline

text: secondary, inducible MEFs

text: Mus musculus

text: Doxycycline-induced MEFs

text: 129/SvJ x C57/B6 hybrid


text: Systems Biology, National Institute of Environmental Health Sciences, National Institutes of Health

text: live

text: Generic

characteristic: NCBI submission package

characteristic: antibody

text: Lin- bone marrow hematopoietic progenitor cells

text: Mus musculus

text: Bone marrow hematopoietic progenitor cells enriched by depletion of Lin+ cells

text: Lin- Ldb1 ChIP-Seq


text: live

text: Generic

text: Mus musculus

characteristic: organism

text: Lin- Scl/Tal1 ChIP-Seq


text: live

text: Generic

text: Mus musculus

text: Lin- Gata2 ChIP-Seq


text: live

text: Generic

text: IgG

text: Mus musculus

text: Lin- Control IgG ChIP-Seq


VISA

text: University of Melbourne

text: live

text: Generic

text: Staphylococcus aureus


genomic DNA, untreated

text: nci

text: live

text: Generic

text: This is the mouse genomic DNA untreated (input, untreated, JH03)

characteristic: description

text: Mus musculus

text: whole genomic DNA of mouse embryonic stem cells, untreated


genomic DNA, adriamycin, 8h

text: nci

text: live

text: Generic

text: This the whole genomic DNA from mouse embryonic stem cells, treated with adriamycin for 8 hours.

text: Mus musculus

text: whole genome DNA of mouse embryonic stem cells, adriamycin treated for 8 hours


text: National Institute of Biological Sciences, Beijing

text: live

text: Generic

text: About 400,000 Arg Ura colonies derived from DY1432, DY1433 and DY1434 upon transposition induction for 2 days in liquid EMM medium without thiamine were harvested and pooled. Genomic DNA was extracted from 30 OD600 units of cells and fragmented to the size of 250 ~1000 bp by sonication. The fragmented DNA in the size range of 250~750 bp was purified from 2% agarose gel with GFX PCR DNA and Gel Band Purification Kit (GE Healthcare). A DNA adaptor composed of oligo 496 and 497 was ligated to the DNA fragments with NEBNext DNA Sample Master Mix Set 1 (New England Biolabs). To amplify the PB insertion site-flanking sequences, we performed 30 cycles of PCR with a PB specific primer close to the terminal repeats (oligo 128) and a primer annealing to the adaptor (oligo 498). After purification using the GFX kit, a further round of 30-cycle PCR was performed with primers oligo 145 and Seqr to add sequences needed for Illumina sequencing. Forty-two-cycle single-end sequencing was carried out using an Illumina Genome Analyzer II. The sequencing primer oligo 594 was designed such that the first three bases of PB specific reads were GGG from PB terminal repeats followed by PB-flanking genomic DNA sequence.

text: Schizosaccharomyces pombe


Nycodenz_study_2010 1DB

text: University of Copenhagen, Department of Biology

text: live

text: Generic

text: DNA isolated directly from the soil from soil plot 1, technical replicate B

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 2DA

text: live

text: Generic

text: DNA isolated directly from the soil from soil plot 2, technical replicate A

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 2DB

text: live

text: Generic

text: DNA isolated directly from the soil from soil plot 2, technical replicate B

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 3DA

text: live

text: Generic

text: DNA isolated directly from the soil from soil plot 3, technical replicate A

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 3DB

text: live

text: Generic

text: DNA isolated directly from the soil from soil plot 3, technical replicate B

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 1NA

text: live

text: Generic

text: DNA isolated from Nycodenz extracted bacterial cells from from soil plot 1, technical replicate A

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 1NB

text: live

text: Generic

text: DNA isolated from Nycodenz extracted bacterial cells from from soil plot 1, technical replicate B

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 2NA

text: live

text: Generic

text: DNA isolated from Nycodenz extracted bacterial cells from from soil plot 2, technical replicate A

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 2NB

text: live

text: Generic

text: DNA isolated from Nycodenz extracted bacterial cells from from soil plot 2, technical replicate B

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 3NA

text: live

text: Generic

text: DNA isolated from Nycodenz extracted bacterial cells from from soil plot 3, technical replicate A

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 3NB

text: live

text: Generic

text: DNA isolated from Nycodenz extracted bacterial cells from from soil plot 3, technical replicate B

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 1PA

text: live

text: Generic

text: DNA isolated from the soil pellet left after extraction of cells by Nycodenz from soil plot 1, technical replicate A

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 1PB

text: live

text: Generic

text: DNA isolated from the soil pellet left after extraction of cells by Nycodenz from soil plot 1, technical replicate B

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 2PA

text: live

text: Generic

text: DNA isolated from the soil pellet left after extraction of cells by Nycodenz from soil plot 2, technical replicate A

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 2PB

text: live

text: Generic

text: DNA isolated from the soil pellet left after extraction of cells by Nycodenz from soil plot 2, technical replicate B

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 3PA

text: live

text: Generic

text: DNA isolated from the soil pellet left after extraction of cells by Nycodenz from soil plot 3, technical replicate A

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 3PB

text: University of Copenhagen, Department of Biology

text: live

text: Generic

text: DNA isolated from the soil pellet left after extraction of cells by Nycodenz from soil plot 3, technical replicate B

text: soil metagenome

text: Nycodenz extraction from soil


Nycodenz_study_2010 Default

text: live

text: Generic

text: soil metagenome

text: Nycodenz extraction from soil


p53 chip-seq, mES, untreated

text: nci

text: live

text: Generic

text: Mus musculus

text: p53 ChIP-seq in mouse ES cells, untreated


p53 chip-seq, mES, adriamycin, 8h

text: nci

text: live

text: Generic

text: Mus musculus

text: p53 ChIP-seq in mouse ES cells treated with adriamycin for 8 hours


p53S18P chip-seq, mES, untreated

text: nci

text: live

text: Generic

text: Mus musculus

text: mES cells for p53S18P ChIP-seq, untreated


p53S18P chip-seq, mES, adr, 8h

text: nci

text: live

text: Generic

text: Mus musculus

text: mES treated with adriamycin for 8 hours for p53S18P chip-seq


text: Washington University, Genome Sequencing Center

text: live

text: Generic

text: Sample Type : genomic dna

text: Paraburkholderia tuberum STM678

text: Generic sample from Burkholderia tuberum STM678


text: University of California San Diego

text: live

text: Generic

text: Each sample contains the paired-end sequencing files of genomic DNA that was isolated from a pool of 100 male and 100 female adult flies collected from hypoxia-adapted populations or generation matched control populations. A total of 3?g was sheared DNA and used to construct library for paired-end sequencing. The 54+54 paired-end sequencing was performed using genome analyzer II (Illumina, San Diego, CA) and sequencing kit v3. The fluorescent images were processed to sequences using the Illumina base-calling pipeline (GA Pipeline-1.4.0).

text: Drosophila melanogaster


text: Mount Desert Island Biological Laboratory

text: live

text: Generic

text: Stage 24-30 embryos

characteristic: developmental stage

text: elasmobranch

characteristic: lineage

text: Scyliorhinus canicula

text: Stage 24-30 embryonic

text: Scyliorhinus canicula pooled Stage 24-30 embryos


text: live

text: Generic

text: Stage 32 embryos

text: non-elasmobranch

text: Callorhinchus milii

text: Stage 32 embryonic

text: Callorhinchus milii pooled Stage 32 embryos


text: Boffelli, Center for Genetics, CHORI

text: live

text: Generic

text: rabbit polyclonal anti-mouse MIWI2 (PIWIL4)

characteristic: catalog number

text: Mus musculus

text: mouse erythroleukemia cells (ATCC TIB-55)

text: Friend virus-transformed early mouse erythroblasts

characteristic: tissue

text: Abcam

characteristic: vendor


text: Boffelli, Center for Genetics, CHORI

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: 10 weeks

characteristic: age

text: Mus musculus

text: splenocytes

characteristic: strain

text: spleen

text: Abcam


characteristic: External Id

text: Boffelli, Center for Genetics, CHORI

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: 10 weeks

text: Mus musculus

text: testis tissue

text: testis

characteristic: title


text: University of California, Davis

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Zea mays subsp. mays

text: B73, USDA-ARS accession: PI 550473


text: IPMC/CNRS

text: live

text: Generic

text: TRF1 monoclonal

characteristic: chip antibody

characteristic: chip antibody catalog

text: Abcam

characteristic: chip antibody provider

text: confluent, not synchronized cells

characteristic: culture

text: Homo sapiens

characteristic: organism

text: Transformed BJ fibroblasts (SV40 largeT, hTERT, H-ras V12, according to Hahn et.al. Nature 1999)

text: TRF1 monoclonal ChIP BJ fibroblasts


text: IPMC/CNRS

characteristic: INSDC secondary accession

text: live

text: Generic

text: TRF2 monoclonal

text: Imgenex

text: confluent, not synchronized cells

text: Homo sapiens

text: TRF2 monoclonal ChIP BJ fibroblasts


text: IPMC/CNRS

text: live

text: Generic

characteristic: SRA accession

text: TRF2 polyclonal

text: Imgenex

text: confluent, not synchronized cells

text: Homo sapiens

text: TRF2 polyclonal ChIP BJ fibroblasts


text: IPMC/CNRS

text: live

text: Generic

text: confluent, not synchronized cells

text: Homo sapiens

text: ProteinG beads background precipitation BJ fibroblasts


Zea luxurians

text: University of California, Davis

text: live

text: Generic

text: Zea luxurians

text: Zea luxurians, USDA-ARS accession: PI441933


text: Human Cancer Genetics, 814, Biomedical Research Tower, Molecular Virology, Immunology & Medical Genetics, The Ohio State University

text: live

text: Generic

text: untreated

characteristic: agent

characteristic: catalog number

text: MCF7, tamoxifen resistance

characteristic: cell line

text: Breast cancer cell

characteristic: cell type

text: PolII

text: Homo sapiens

text: Tamoxifen resistance MCF7 cell line

text: PolII control

text: Santa Cruz Biotechnology

characteristic: vendor


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: E2 treated

text: MCF7, tamoxifen resistance

text: Breast cancer cell

text: PolII

text: Homo sapiens

text: Tamoxifen resistance MCF7 cell line

text: PolII E2 treat

characteristic: title

text: Santa Cruz Biotechnology


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: untreated

text: MCF7, tamoxifen resistance

text: Breast cancer cell

text: ER

text: Homo sapiens

text: Tamoxifen resistance MCF7 cell line

text: ER control

text: Santa Cruz Biotechnology


text: live

text: Generic

text: E2 treated

text: MCF7, tamoxifen resistance

text: Breast cancer cell

text: ER

characteristic: chip antibody

text: Homo sapiens

text: Tamoxifen resistance MCF7 cell line

text: ER E2 treat

text: Santa Cruz Biotechnology


CEU-M

text: CSHL

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: NA12892 CEU Mother


CEU-F

text: CSHL

characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

text: NA12891 CEU Father


CEU-D

text: CSHL

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: NA12878 CEU Daughter


YRI-M

text: CSHL

text: live

text: Generic

text: Homo sapiens

text: NA19238 YRI Mother


YRI-F

text: CSHL

text: live

text: Generic

text: Homo sapiens

text: NA19239 YRI Father


YRI-D

text: CSHL

text: live

text: Generic

text: Homo sapiens

text: NA19240 YRI Daughter


text: University of Calgary

text: live

text: Generic

text: Water-phase microbial community from the oil field near Medicine Hat (AB, Canada): gravitational separation of the water phase from the oil phase; centrifugation; Marmur method of DNA isolation, no bead beating

characteristic: description

text: hydrocarbon metagenome

text: Aqueous phase microbial community


text: University of Calgary

text: live

text: Generic

text: Microbial community associated with the oil phase from the oil field near Medicine Hat (AB, Canada): gravitational separation of the oil phase from the water phase; centrifugation; Marmur method of DNA isolation, no bead beating

text: hydrocarbon metagenome

text: Oil phase microbial community


text: University of Calgary

text: live

text: Generic

text: Water-phase microbial community from the oil field near Medicine Hat (AB, Canada): gravitational separation of the water phase from the oil phase; centrifugation; Marmur method of DNA isolation with the bead beating step

text: hydrocarbon metagenome

text: Aqueous phase microbial community


text: University of Calgary

text: live

text: Generic

text: Microbial community associated with the oil phase from the oil field near Medicine Hat (AB, Canada): gravitational separation of the oil phase from the water phase; centrifugation; Marmur method of DNA isolation with the bead beating step

text: hydrocarbon metagenome

text: Oil phase microbial community


text: Victor Chang Cardiac Research Institute

text: live

text: Generic

text: RNAseq from day1 in culture. Biological replicate 1

text: Mus musculus

text: miRNA profile of mouse cardiomyocytes


text: The Australian National University

text: live

text: Generic

text: Hl1.day1.biological replicate2

text: Mus musculus

text: Mouse small RNA


text: The Australian National University

text: live

text: Generic

text: Mus musculus

text: Mouse small RNA


HeLa cells

text: The Australian National University

text: live

text: Generic

text: Homo sapiens

text: RNA Methylation in HeLa Cells of Human


text: Research Center for Epigenetic Disease, The University of Tokyo

text: live

text: Generic

text: Saccharomyces cerevisiae

text: Scc2 distribution in G2 phase


text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction for normalization of Scc2 ChIP


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Scc2 distribution in the yeast having circular chromosome III


text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction used for normalization of Scc2CircularChIP


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Distribution of Smc6 in wild type cells


text: live

text: Generic

text: Saccharomyces cerevisiae

text: WCE fraction used for normalization of Smc6 ChIP fraction


text: live

text: Generic

text: Saccharomyces cerevisiae

text: Smc6 distribution in the cell bearing circular chromosome III


text: live

text: Generic

text: Saccharomyces cerevisiae

text: The WCE fractiuon used for normalization


text: College of Fisheries and Life Science, Shanghai Ocean University

text: live

text: Generic

text: Paralichthys olivaceus

text: Japanese flounder larvae

text: metamorphosis stages

characteristic: stage

text: whole fish

characteristic: tissue

text: pol-sRNA Seq


text: Joint Genome Institute, U.S. Department of Energy

text: live

text: Generic

text: Phycomyces blakesleeanus NRRL 1555(-)

text: Phycomyces blakesleeanus NRRL 1555(-)

text: NRRL 1555(-)

characteristic: strain

text: Generic sample from Phycomyces blakesleeanus NRRL 1555(-)


text: Indiana University

text: live

text: Generic

text: Total RNA was extracted from leaves, excluding the midrib, according to the method of Bailey et al., 2005.

text: Theobroma cacao

text: T. cacao Matina1-6 leaf


collenchyma

text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: collenchyma tissues of fruit pericarp at 10 days post anthesis


epidermis

text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: epidermis tissues of fruit pericarp at 10 days post anthesis


vascular

text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: vascular tissues of fruit pericarp at 10 days post anthesis


parenchyma

text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: parenchyma tissues of fruit pericarp at 10 days post anthesis


endodermis

text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: endodermis tissues of fruit pericarp at 10 days post anthesis


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: pericarp of 1cm fruit (7 days post anthesis)


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: pericarp of fruit at mature green stage


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Ailsa Craig

text: Solanum lycopersicum

text: pericarp of fruit at breaker stage


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: pericarp of fruit at 7 days post breaker stage


text: Indiana University

text: live

text: Generic

text: Theobroma cacao

text: cBPQTL12, 27 BACs


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: rin mutant in Ailsa Craig background

text: Solanum lycopersicum

text: pericarp of fruit at 7 days post breaker stage (rin mutant)


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: nor mutant in Ailsa Craig background

text: Solanum lycopersicum

text: pericarp of fruit at 7 days post breaker stage (nor mutant)


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: Nr mutant in Ailsa Craig background

text: Solanum lycopersicum

text: pericarp of fruit at 7 days post breaker stage (Nr mutant)


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: hp1 mutant in Ailsa Craig background

text: Solanum lycopersicum

text: pericarp of fruit at 7 days post breaker stage (hp1 mutant)


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: apricot mutant in Ailsa Craig background

text: Solanum lycopersicum

text: pericarp of fruit at 7 days post breaker stage (apricot mutant)


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: TAGL1 RNAi line in Ailsa Craig background

text: Solanum lycopersicum

text: pericarp of fruit at 7 days post breaker stage (TAGL1 RNAi line)


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: M82

text: Solanum lycopersicum

text: pericarp of fruit at 7 days post breaker stage (M82)


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: S. pennellii introgression line IL2-2

text: Solanum lycopersicum

text: pericarp of fruit at 7 days post breaker stage (IL2-1t)


text: Boyce Thompson Institute

text: live

text: Generic

text: cultivar: M82

text: Solanum lycopersicum

text: pollen (M82)


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum pennellii

text: pollen (S. pennellii)


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: unpollinated style (M82)


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum pennellii

text: unpollinated style (S. pennellii)


text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: pollinated style (M82 X M82)


text: Boyce Thompson Institute

text: live

text: Generic

text: LA0716: S. pennellii

text: Solanum pennellii

text: pollinated style (LA0716 X LA0716)


text: Boyce Thompson Institute

text: live

text: Generic

text: LA0716: S. pennellii

text: Solanum lycopersicum

text: pollinated style (M82 X LA0716)


text: Boyce Thompson Institute

text: live

text: Generic

text: LA0716: S. pennellii

text: Solanum lycopersicum

text: pollinated style (LA0716 X M82)


text: VU University Amsterdam

text: live

text: Generic

text: Strain L. lactis NZ5521 is a descendant of strain KF147, and was evolved in milk for 1000 generations. The provisional name of this strain was HB01a. The strain is deposited under NZ5521 in the NIZO strain collection (NIZO food research, Ede, The Netherlands)

text: Lactococcus lactis subsp. lactis KF147

text: Lactococcus lactis ssp. lactis NZ5521


text: VU University Amsterdam

text: live

text: Generic

text: L. lactis strain NZ5522 is a descendant of strain KF147, and was evolved in milk for 1000 generations. The provisional name of this strain was HB03a. The strain is deposited under NZ5522 in the NIZO strain collection (NIZO food research, Ede, The Netherlands)

text: Lactococcus lactis subsp. lactis KF147

text: Lactococcus lactis ssp. lactis NZ5522


text: VU University Amsterdam

text: live

text: Generic

text: L. lactis strain NZ5523 is a descendant of strain KF147, and was evolved in milk for 1000 generations. The provisional name of this strain was HB05a. The strain is deposited under NZ5523 in the NIZO strain collection (NIZO food research, Ede, The Netherlands)

text: Lactococcus lactis subsp. lactis KF147

text: Lactococcus lactis ssp. lactis NZ5523


text: University of Bergen

text: live

text: Generic

text: sediment metagenome

text: Sample 1 top layer sediments collected using slurping device


text: University of Bergen

text: live

text: Generic

text: sediment metagenome

text: Sample 2 top layer sediments collected using ROV shovel box


text: Baylor College of Medicine

text: live

text: Generic

text: anti-ERalpha HC20

characteristic: antibody

text: Homo sapiens

text: Cell line

text: U2OS-ERalpha (stable)


characteristic: External Id

text: Baylor College of Medicine

text: live

text: Generic

text: anti-SRC1 M341

text: Homo sapiens

text: Cell line

text: U2OS-ERalpha (stable)


text: Baylor College of Medicine

characteristic: INSDC center name

text: live

text: Generic

text: normal rabbit IgG

text: Homo sapiens

text: Cell line

text: U2OS-ERalpha (stable)


text: Baylor College of Medicine

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: Cell line

text: U2OS-ERalpha (stable)


mock

text: Boyce Thompson Institute

text: live

text: Generic

text: Solanum lycopersicum

text: mock (water) inoculated tomato leaves

characteristic: title


text: Boyce Thompson Institute

characteristic: INSDC last update

text: live

text: Generic

text: The sample contains both tomato leaves and P. infestans so both tomato and P. infestans tarnscriptomes were sequenced

text: Solanum lycopersicum

text: tomato leaves after 48 hours of P. infestans infection


text: Boyce Thompson Institute

text: live

characteristic: INSDC status

text: Generic

text: Solanum lycopersicum

text: tomato leaves after 96 hours of P. infestans infection


text: Boyce Thompson Institute

text: live

text: Generic

characteristic: NCBI submission model

text: Solanum lycopersicum

text: tomato leaves after 144 hours of P. infestans infection


text: Washington University, Genome Sequencing Center

text: live

text: MIGS.ba

characteristic: NCBI submission package

text: Velvet

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft43.9x;242

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: skin

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: skin

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Acinetobacter baumannii 6013113

text: Acinetobacter baumannii 6013113

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

characteristic: sop

text: NCTC 13487

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Acinetobacter baumannii 6013113


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: Level 2: High-Quality Draft69.7x;208

text: not determined

text: not determined

text: skin

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: skin

text: not determined

text: not determined

text: Acinetobacter baumannii 6013150

characteristic: organism

text: Acinetobacter baumannii 6013150

text: Reference Genome

text: not determined

text: Illumina

text: NCTC 13486

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Acinetobacter baumannii 6013150

characteristic: title


text: live

text: MIGS.ba

text: Velvet

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft46.8x;209

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: skin

characteristic: isolation-source

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: skin

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Acinetobacter baumannii 6014059

text: Acinetobacter baumannii 6014059

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

characteristic: sop

text: NCTC 13485

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Acinetobacter baumannii 6014059


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: Level 2: High-Quality Draft99

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: oral

text: not determined

text: not determined

characteristic: organism

text: Actinomyces sp. oral taxon 170 F0386

text: Reference Genome

text: not determined

text: 454, Sanger

text: BEI HM-468

text: Homo sapiens

characteristic: specific host

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Actinomyces sp. oral taxon 170 str. F0386


text: live

text: MIGS.ba

text: not determined

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft580

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Actinomyces sp. oral taxon 171 F0337

characteristic: project name

text: Reference Genome

text: not determined

text: 454, Sanger

characteristic: sequencing method

text: BEI HM-284

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Actinomyces sp. oral taxon 171 str. F0337

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: Level 2: High-Quality Draft34

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Intestinal tract

text: not determined

text: not determined

text: Bacteroides clarus YIT 12056

characteristic: organism

text: Bacteroides clarus YIT 12056

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: DSM 22519, JCM 16067

text: Homo sapiens

text: YIT 12056

text: MIGS Cultured Bacterial/Archaeal sample from Bacteroides clarus YIT 12056


text: live

text: MIGS.ba

text: not determined

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft117

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Intestinal tract

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Bacteroides fluxus YIT 12057

text: Bacteroides fluxus YIT 12057

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

text: DSM 22534, JCM 16101

text: Homo sapiens

characteristic: specific host

text: YIT 12057

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Bacteroides fluxus YIT 12057


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: Level 2: High-Quality Draft157

text: not determined

text: not determined

text: oral cavity

characteristic: isolation-source

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: oral

text: not determined

text: not determined

text: Capnocytophaga sp. oral taxon 329 F0087

text: Reference Genome

text: not determined

text: 454, Sanger

characteristic: sequencing method

text: BEI HM-267

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Capnocytophaga sp. oral taxon 329 str. F0087

characteristic: title


text: live

text: MIGS.ba

text: Velvet v. 0.7.59

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Sample Type : genomic dna

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft76.5x;34

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Corynebacterium ammoniagenes DSM 20306

characteristic: organism

text: Corynebacterium ammoniagenes DSM 20306

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: DSM 20306, ATCC 6871, NCIB 8143, NCTC 2398

text: Homo sapiens

characteristic: specific host

text: DSM 20306

text: MIGS Cultured Bacterial/Archaeal sample from Corynebacterium ammoniagenes DSM 20306


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: Level 2: High-Quality Draft90.5x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

text: not determined

text: not determined

text: Enterococcus faecalis DAPTO 512

text: Enterococcus faecalis DAPTO 512

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-430

text: Homo sapiens

text: DAPTO 512

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis DAPTO 512

characteristic: title


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft71.1x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Blood

characteristic: misc_param: HMP body site

text: other

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis DAPTO 516

characteristic: organism

text: Enterococcus faecalis DAPTO 516

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-431

text: Homo sapiens

text: DAPTO 516

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis DAPTO 516


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: Level 2: High-Quality Draft67.4x;132

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

text: not determined

text: not determined

text: Enterococcus faecalis R712

text: Enterococcus faecalis R712

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-335

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis R712


text: live

text: MIGS.ba

text: not determined

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft71.3x;145

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Blood

characteristic: misc_param: HMP body site

text: other

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis S613

characteristic: organism

text: Enterococcus faecalis S613

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-334

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis S613

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: not determined

text: Level 2: High-Quality Draft76.2x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

text: not determined

text: not determined

text: Enterococcus faecalis TX0012

text: Enterococcus faecalis TX0012

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-437

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0012


text: Washington University, Genome Sequencing Center

text: live

text: MIGS.ba

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

text: not determined

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft81.3x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Blood

characteristic: misc_param: HMP body site

text: other

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX0017

characteristic: organism

text: Enterococcus faecalis TX0017

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-438

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0017


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Enterococcus faecalis TX0027 EFAH-100217_gDNA_tube1

characteristic: description

text: not determined

text: human-associated habitat [ENVO:00009003]

text: Level 2: High-Quality Draft70.2x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

text: not determined

text: not determined

text: Enterococcus faecalis TX0027

text: Enterococcus faecalis TX0027

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-439

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0027

characteristic: title


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

text: not determined

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft76.1x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Blood

characteristic: misc_param: HMP body site

text: other

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX0031

characteristic: organism

text: Enterococcus faecalis TX0031

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-440

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0031


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: not determined

text: Level 2: High-Quality Draft76.5x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

text: not determined

text: not determined

text: Enterococcus faecalis TX0043

text: Enterococcus faecalis TX0043

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-441

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0043


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft74.8x;83

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Blood

characteristic: misc_param: HMP body site

text: other

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX0102

characteristic: organism

text: Enterococcus faecalis TX0102

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-442

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0102

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: Level 2: High-Quality Draft85.9x;101

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

text: not determined

text: not determined

text: Enterococcus faecalis TX0109

text: Enterococcus faecalis TX0109

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-443

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0109


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

text: not determined

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft68.8x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: not determined

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX0309A

characteristic: organism

text: Enterococcus faecalis TX0309A

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-444

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0309A


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: not determined

text: Level 2: High-Quality Draft68.9x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: not determined

text: Enterococcus faecalis TX0309B

text: Enterococcus faecalis TX0309B

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-445

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0309B

characteristic: title


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

text: not determined

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft76.9x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX0312

characteristic: organism

text: Enterococcus faecalis TX0312

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-446

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0312


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: Level 2: High-Quality Draft73.7x;113

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: not determined

text: Enterococcus faecalis TX0411

text: Enterococcus faecalis TX0411

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-447

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0411


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft73.7x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: not determined

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX0470

characteristic: organism

text: Enterococcus faecalis TX0470

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-448

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0470

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

text: Sample Type : genomic dna

characteristic: description

text: not determined

text: Level 2: High-Quality Draft66x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

text: not determined

text: not determined

text: Enterococcus faecalis TX0630

text: Enterococcus faecalis TX0630

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-449

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0630


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft53.5x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis EnGen0311

characteristic: organism

text: Enterococcus faecalis TX0635

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-450

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0635


ICH_FHVE2CD Ich-G-1-494 Sample

characteristic: External Id

text: J. Craig Venter Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Whole genome shotgun sequencing of Ichthyophthirius multifiliis, strain G5, using a hybrid Sanger/454 strategy

characteristic: description

text: Ichthyophthirius multifiliis strain G5

text: Generic sample from Ichthyophthirius multifiliis strain G5

characteristic: title


text: Washington University, Genome Sequencing Center

text: live

text: MIGS.ba

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

text: not determined

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft67.6x;123

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Blood

characteristic: misc_param: HMP body site

text: other

text: not determined

text: not determined

text: Enterococcus faecalis TX0645

text: Enterococcus faecalis TX0645

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-451

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0645


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Sample Type : genomic dna

text: human-associated habitat [ENVO:00009003]

text: Level 2: High-Quality Draft91.3x;93

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX0855

characteristic: organism

text: Enterococcus faecalis TX0855

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-452

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0855


ICH_FI1W9NV02 Ich-G-1-494 Sample

text: J. Craig Venter Institute

text: live

text: Generic

characteristic: description

text: Ichthyophthirius multifiliis strain G5

characteristic: title


ICH_FISS88R Ich-G-1-494 Sample

text: J. Craig Venter Institute

text: live

text: Generic

text: Ichthyophthirius multifiliis strain G5


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft84.8x;88

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Blood

characteristic: misc_param: HMP body site

text: other

text: not determined

text: not determined

text: Enterococcus faecalis TX0860

text: Enterococcus faecalis TX0860

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-453

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX0860


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Sample Type : genomic dna

text: not determined

text: Level 2: High-Quality Draft83.4x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX1302

characteristic: organism

text: Enterococcus faecalis TX1302

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-454

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX1302


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: description

text: not determined

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft71.4x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: not determined

text: not determined

text: Enterococcus faecalis TX1341

text: Enterococcus faecalis TX1341

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-455

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX1341

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Sample Type : genomic dna

text: not determined

text: Level 2: High-Quality Draft76.1x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX1342

characteristic: organism

text: Enterococcus faecalis TX1342

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-456

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX1342


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: description

text: not determined

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft76.9x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: not determined

text: not determined

text: Enterococcus faecalis TX1346

text: Enterococcus faecalis TX1346

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-457

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX1346


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Sample Type : genomic dna

text: Level 2: High-Quality Draft69.7x;98

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX2134

characteristic: organism

text: Enterococcus faecalis TX2134

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-459

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX2134

characteristic: title


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: description

text: not determined

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft71.7x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: not determined

text: not determined

text: Enterococcus faecalis TX2137

text: Enterococcus faecalis TX2137

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-432

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX2137


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Sample Type : genomic dna

text: not determined

text: Level 2: High-Quality Draft73.5x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX2141

characteristic: organism

text: Enterococcus faecalis TX2141

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-433

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX2141


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: description

text: not determined

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft75.5x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: not determined

text: not determined

text: not determined

text: Enterococcus faecalis TX4000

text: Enterococcus faecalis TX4000

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-434

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX4000

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Sample Type : genomic dna

text: not determined

text: Level 2: High-Quality Draft87.3x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecalis TX4244

characteristic: organism

text: Enterococcus faecalis TX4244

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-435

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX4244


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft68.2x;112

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Lymph Node

characteristic: misc_param: HMP body site

text: other

text: not determined

text: not determined

text: Enterococcus faecalis TX4248

text: Enterococcus faecalis TX4248

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-436

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecalis TX4248


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Sample Type : genomic dna

text: Level 2: High-Quality Draft80.8x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecium TX0082

characteristic: organism

text: Enterococcus faecium TX0082

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-460

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecium TX0082

characteristic: title


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft73.2x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Blood

characteristic: misc_param: HMP body site

text: other

text: not determined

text: not determined

text: Enterococcus faecium TX0133A

text: Enterococcus faecium TX0133A

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-461

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecium TX0133A


characteristic: External Id

text: Washington University, Genome Sequencing Center

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Sample Type : genomic dna

text: Level 2: High-Quality Draft66.8x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecium TX0133a01

characteristic: organism

text: Enterococcus faecium TX0133a01

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-462

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecium TX0133a01


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: description

characteristic: estimated size

text: human-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 2: High-Quality Draft72.2x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Blood

characteristic: misc_param: HMP body site

text: other

text: not determined

text: not determined

text: Enterococcus faecium TX0133a04

text: Enterococcus faecium TX0133a04

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-463

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecium TX0133a04

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Sample Type : genomic dna

text: Level 2: High-Quality Draft73.5x

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: Blood

text: other

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Enterococcus faecium TX0133B

characteristic: organism

text: Enterococcus faecium TX0133B

text: Reference Genome

text: not determined

text: Illumina

characteristic: sop

text: BEI HM-464

text: Homo sapiens

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecium TX0133B


text: Bioinformatics Core, Luxembourg Centre for Systems Biomedicine, University of Luxembourg

text: live

text: Generic

text: Jemalong A17

characteristic: ecotype

text: Medicago truncatula

text: Medicago truncatula roots inoculated with Glomus intraradices (3wpi)

text: sr-myc


text: live

text: Generic

text: Jemalong A17

text: Medicago truncatula

text: Medicago truncatula roots

text: sr-nm


text: live

text: Generic

text: Jemalong A17

text: Medicago truncatula

text: deg-myc


text: live

text: Generic

text: Jemalong A17

text: Medicago truncatula

text: Medicago truncatula roots

text: deg-nm


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft74.2x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Blood

characteristic: misc_param: HMP body site

text: other

text: not determined

text: not determined

text: Enterococcus faecium TX0133C

text: Enterococcus faecium TX0133C

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

text: BEI HM-465

text: Homo sapiens

characteristic: specific host

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecium TX0133C


characteristic: External Id

text: TSRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CTCF (Millipore 07-729)

characteristic: antibody

text: CD19+Rag1−/− pro-B

characteristic: genotype/variation

text: Mus musculus

characteristic: organism

text: CTCF ChIP

characteristic: strain

text: bone marrow

characteristic: tissue

characteristic: title


text: TSRI

text: live

text: Generic

text: Rad21 (Millipore #ab992)

text: CD19+Rag1−/− pro-B

text: Mus musculus

text: Rad21 ChIP

text: bone marrow


text: TSRI

text: live

text: Generic

text: CD19+Rag1−/− pro-B

text: Mus musculus

text: Input DNA

text: bone marrow

text: Input DNA


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft65x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: Colon

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

characteristic: sequencing method

characteristic: sop

text: BEI HM-473

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Faecalibacterium cf. prausnitzii KLE1255


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not determined

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

text: not determined

text: Sample Type : genomic dna

text: Level 2: High-Quality Draft871

text: not determined

text: not determined

text: not determined

text: biological product [ENVO:02000043]

text: not determined

text: not determined

text: not determined

text: Klebsiella sp. MS 92-3

characteristic: organism

text: Klebsiella sp. MS 92-3

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-354

text: Homo sapiens

characteristic: specific host

text: MS 92-3

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Klebsiella sp. MS 92-3

characteristic: title


text: live

text: MIGS.ba

text: Velvet v. 0.7.57

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

text: Sample Type : genomic dna

characteristic: description

characteristic: estimated size

characteristic: feature

text: Level 2: High-Quality Draft124.7x

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

characteristic: host taxid

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

text: oral

characteristic: misc_param: HMP supersite

text: not determined

characteristic: nucleic acid extraction

text: not determined

text: Megasphaera micronuciformis F0359

text: Megasphaera micronuciformis F0359

characteristic: project name

text: Reference Genome

text: not determined

text: Illumina

text: BEI HM-269

text: Homo sapiens

text: MIGS Cultured Bacterial/Archaeal sample from Megasphaera micronuciformis F0359