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text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737886/2022

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: SARS-CoV-2: clinical or host-associated

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

text: Homo sapiens

characteristic: host

text: White

text: male

text: Nasal - Anterior Nares

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737866/2022

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

characteristic: collection method

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

text: Homo sapiens

characteristic: host age

text: Asian

text: male

text: Nasal - Anterior Nares

characteristic: isolation source

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737865/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Aegis Sciences Corporation

characteristic: collected by

characteristic: collection date

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

characteristic: geo loc name

text: Homo sapiens

characteristic: host disease

text: White

characteristic: host race

text: female

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


characteristic: External Id

text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737864/2022

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: SARS-CoV-2: clinical or host-associated

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

text: Homo sapiens

characteristic: host

text: White

text: female

characteristic: host sex

characteristic: isolate

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737279/2022

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

characteristic: collection method

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

text: Homo sapiens

characteristic: host age

text: White

text: female

text: Nasal - Anterior Nares

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737278/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Aegis Sciences Corporation

characteristic: collected by

characteristic: collection date

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

characteristic: geo loc name

text: Homo sapiens

text: Asian

text: female

text: Nasal - Anterior Nares

characteristic: isolation source

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737277/2022

characteristic: External Id

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: SARS-CoV-2: clinical or host-associated

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

text: Homo sapiens

characteristic: host

characteristic: host disease

text: male

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737276/2022

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

characteristic: collection method

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

text: Homo sapiens

text: Asian

characteristic: host race

text: male

characteristic: host sex

characteristic: isolate

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737275/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Aegis Sciences Corporation

characteristic: collected by

characteristic: collection date

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

text: Homo sapiens

characteristic: host age

text: Asian

text: male

text: Nasal - Anterior Nares

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


characteristic: External Id

text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737273/2022

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: SARS-CoV-2: clinical or host-associated

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

characteristic: geo loc name

text: Homo sapiens

text: White

text: male

text: Nasal - Anterior Nares

characteristic: isolation source

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737270/2022

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

characteristic: collection method

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

text: Homo sapiens

characteristic: host

characteristic: host disease

text: male

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CA-CDC-ASC210737197/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Aegis Sciences Corporation

characteristic: collected by

characteristic: collection date

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: California

text: Homo sapiens

text: male

characteristic: host sex

characteristic: isolate

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


characteristic: External Id

text: SARS-CoV-2/Human/USA/AZ-CDC-ASC210847801/2022

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: SARS-CoV-2: clinical or host-associated

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arizona

text: Homo sapiens

characteristic: host age

text: Black or African American

characteristic: host race

text: female

text: Nasal - Anterior Nares

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/AZ-CDC-ASC210847319/2022

text: CDC-OAMD

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arizona

characteristic: geo loc name

text: Homo sapiens

text: male

text: Nasal - Anterior Nares

characteristic: isolation source

characteristic: lineage/clade name

text: baseline surveillance (random sampling)

text: CDC Sars CoV2 Sequencing Baseline Constellation


text: SARS-CoV-2/Human/USA/AZ-CDC-ASC210847318/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Aegis Sciences Corporation

characteristic: collected by

characteristic: collection date

text: Nasal - Anterior Nares

characteristic: collection method

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arizona

text: Homo sapiens

characteristic: host

characteristic: host disease

text: male

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AZ-CDC-ASC210847261/2022

characteristic: External Id

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: SARS-CoV-2: clinical or host-associated

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arizona

text: Homo sapiens

characteristic: host age

text: White

characteristic: host race

text: female

characteristic: host sex

characteristic: isolate

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AZ-CDC-ASC210847253/2022

text: CDC-OAMD

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arizona

characteristic: geo loc name

text: Homo sapiens

text: White

text: male

text: Nasal - Anterior Nares

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/AZ-CDC-ASC210846249/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Aegis Sciences Corporation

characteristic: collected by

characteristic: collection date

text: Nasal - Anterior Nares

characteristic: collection method

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arizona

text: Homo sapiens

text: White

text: male

text: Nasal - Anterior Nares

characteristic: isolation source

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AZ-CDC-ASC210846196/2022

characteristic: External Id

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: SARS-CoV-2: clinical or host-associated

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arizona

text: Homo sapiens

characteristic: host

characteristic: host age

characteristic: host disease

text: White

characteristic: host race

text: female

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AZ-CDC-ASC210738919/2022

text: CDC-OAMD

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arizona

characteristic: geo loc name

text: Homo sapiens

text: Black or African American

text: male

characteristic: host sex

characteristic: isolate

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AZ-CDC-ASC210738393/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Aegis Sciences Corporation

characteristic: collected by

characteristic: collection date

text: Nasal - Anterior Nares

characteristic: collection method

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arizona

text: Homo sapiens

text: Asian

text: female

text: Nasal - Anterior Nares

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


characteristic: External Id

text: SARS-CoV-2/Human/USA/AZ-CDC-ASC210738377/2022

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: SARS-CoV-2: clinical or host-associated

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arizona

text: Homo sapiens

characteristic: host

characteristic: host age

text: White

text: female

text: Nasal - Anterior Nares

characteristic: isolation source

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AZ-CDC-ASC210738212/2022

text: CDC-OAMD

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arizona

characteristic: geo loc name

text: Homo sapiens

characteristic: host disease

text: White

characteristic: host race

text: male

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AR-CDC-ASC210737962/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Aegis Sciences Corporation

characteristic: collected by

characteristic: collection date

text: Nasal - Anterior Nares

characteristic: collection method

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Arkansas

text: Homo sapiens

text: White

text: female

characteristic: host sex

characteristic: isolate

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AL-CDC-ASC210847262/2022

characteristic: External Id

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: SARS-CoV-2: clinical or host-associated

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Alabama

text: Homo sapiens

characteristic: host

characteristic: host age

text: White

text: female

text: Nasal - Anterior Nares

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/AL-CDC-ASC210738051/2022

text: CDC-OAMD

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Alabama

characteristic: geo loc name

text: Homo sapiens

text: White

text: male

text: Nasal - Anterior Nares

characteristic: isolation source

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AK-CDC-ASC210737966/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Aegis Sciences Corporation

characteristic: collected by

characteristic: collection date

text: Nasal - Anterior Nares

characteristic: collection method

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Alaska

text: Homo sapiens

characteristic: host disease

text: White

characteristic: host race

text: female

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AK-CDC-ASC210737913/2022

characteristic: External Id

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: SARS-CoV-2: clinical or host-associated

text: Aegis Sciences Corporation

text: Nasal - Anterior Nares

text: Nasal - Anterior Nares

text: N gene

text: S gene

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: TaqPath COVID-19 Combo Kit

text: USA: Alaska

text: Homo sapiens

characteristic: host

characteristic: host age

text: White

text: male

characteristic: host sex

characteristic: isolate

text: Nasal - Anterior Nares

text: baseline surveillance (random sampling)


Mycobacterium tuberculosis 361

text: St. Petersburg Pasteur Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: Maria Badleeva

text: Russia: Ulan-Ude

text: Homo sapiens

text: tuberculosis

text: Mycobacterium tuberculosis 361

text: sputum

text: 51.50 N 107.36 E

text: Mycobacterium tuberculosis

characteristic: organism

text: Pathogen: clinical or host-associated sample from Mycobacterium tuberculosis

characteristic: title


Mycobacterium tuberculosis 362

text: St. Petersburg Pasteur Institute

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: Maria Badleeva

text: Russia: Ulan-Ude

text: Homo sapiens

text: tuberculosis

text: Mycobacterium tuberculosis 362

text: sputum

text: 51.50 N 107.36 E

text: Mycobacterium tuberculosis


Mycobacterium tuberculosis 380

text: St. Petersburg Pasteur Institute

text: live

text: Pathogen.cl

text: Maria Badleeva

text: Russia: Ulan-Ude

text: Homo sapiens

text: tuberculosis

text: Mycobacterium tuberculosis 380

text: sputum

text: 51.50 N 107.36 E

text: Mycobacterium tuberculosis


Mycobacterium tuberculosis 390

text: St. Petersburg Pasteur Institute

text: live

text: Pathogen.cl

text: Maria Badleeva

text: Russia: Ulan-Ude

text: Homo sapiens

text: tuberculosis

text: Mycobacterium tuberculosis 390

text: sputum

text: 51.50 N 107.36 E

text: Mycobacterium tuberculosis


Mycobacterium tuberculosis 396

text: St. Petersburg Pasteur Institute

text: live

text: Pathogen.cl

text: Maria Badleeva

text: Russia: Ulan-Ude

text: Homo sapiens

text: tuberculosis

text: Mycobacterium tuberculosis 396

text: sputum

text: 51.50 N 107.36 E

text: Mycobacterium tuberculosis


text: Ruijin Hospital affiliated to Shanghai Jiao Tong University School of Medicine

text: live

text: Metagenome or environmental

text: China:shanghai

text: not collected

text: human gut metagenome


text: Baylor College of Medicine

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:5.0

characteristic: description

text: Prothesis

text: Hip

text: biopsy sample

text: USA: St. Luke's, Chesterfield, Missouri

characteristic: geo loc name

text: Homo sapiens

text: hip prothesis biopsy

characteristic: isolation-source

text: 38.6513 N 90.5036 W

characteristic: lat lon

text: Enterobacter hormaechei

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Enterobacter hormaechei


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: Prothesis

text: Hip

text: biopsy sample

text: USA: UCSF Medical Center, San Francisco, California

text: Homo sapiens

characteristic: host

text: hip prothesis biopsy

text: 37.7629 N 122.4575 W

text: Klebsiella aerogenes

text: MIGS Cultured Bacterial/Archaeal sample from Klebsiella aerogenes


text: Baylor College of Medicine

characteristic: INSDC last update

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: Bacterimia

text: Blood

text: blood

text: USA: Keck School of Medicine USC, Los Angeles, California

text: Homo sapiens

text: blood

text: 34.0611 N 118.2057 W

text: Escherichia coli

text: MIGS Cultured Bacterial/Archaeal sample from Escherichia coli


text: Baylor College of Medicine

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: Urinary tract infection

text: Urinary tract

text: urine

text: USA: UCSD Medical Center, San Diego, California

text: Homo sapiens

text: Urinary tract

text: 32.7539 N 117.1655 W

text: Escherichia coli


text: Baylor College of Medicine

text: live

text: MIGS/MIMS/MIMARKS.human-associated

characteristic: NCBI submission model

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: Urinary tract infection

text: Urinary tract

text: urine

text: USA: UM Hospital, Miami, Florida

text: Homo sapiens

text: Urinary tract

text: 25.7885 N 80.2162 W

text: Klebsiella pneumoniae

text: MIGS Cultured Bacterial/Archaeal sample from Klebsiella pneumoniae


text: Baylor College of Medicine

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: VAD Infection

text: Ventricular Assist Device

text: biopsy sample

text: USA: Mayo Clinic, Rochester, Minnesota

text: Homo sapiens

text: ventricular Assist Device

text: 44.0196 N 92.4811 W

text: Staphylococcus aureus

characteristic: organism

text: MIGS Cultured Bacterial/Archaeal sample from Staphylococcus aureus


text: Baylor College of Medicine

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: VAD Infection

text: Ventricular Assist Device

text: biopsy sample

text: Homo sapiens

text: ventricular Assist Device

text: 32.7539 N 117.1655 W

text: Staphylococcus aureus

characteristic: title


text: Baylor College of Medicine

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:5.0

text: VAD Infection

text: Ventricular Assist Device

text: biopsy sample

text: USA: University of Minnesota Medical Center, Minneapolis, Minnesota

text: Homo sapiens

text: ventricular Assist Device

text: 29.7079 N 95.4016 W

text: Enterococcus faecium

text: MIGS Cultured Bacterial/Archaeal sample from Enterococcus faecium


text: Baylor College of Medicine

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: VAD Infection

text: Ventricular Assist Device

text: biopsy sample

text: Homo sapiens

text: ventricular Assist Device

text: 44.0196 N 92.4811 W

text: Escherichia coli


text: Baylor College of Medicine

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: Sternotomy infection

text: Sternum

text: biopsy sample

text: USA: Texas Children's Hospital, Houston, Texas

text: Homo sapiens

text: sternum

text: 40.4421 N 79.9608 W

text: Klebsiella pneumoniae


text: Baylor College of Medicine

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: Prothesis

text: Hip

text: biopsy sample

text: USA: Mayo Clinic, Rochester, Minnesota

text: Homo sapiens

text: hip prothesis biopsy

text: 38.6513 N 90.5036 W

text: Pseudomonas aeruginosa

text: MIGS Cultured Bacterial/Archaeal sample from Pseudomonas aeruginosa


text: Baylor College of Medicine

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: Prothesis

text: Hip

text: biopsy sample

text: USA: Mayo Clinic, Rochester, Minnesota

text: Homo sapiens

text: hip prothesis biopsy

text: 38.6513 N 90.5036 W

text: Klebsiella pneumoniae


text: Baylor College of Medicine

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:5.0

text: Bacterimia

text: Blood

text: blood

text: USA: University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania

text: Homo sapiens

text: blood

text: 44.9712 N 93.2307 W

text: Staphylococcus aureus


text: Cancer Genetics & Genomics, Roswell Park Comprehensive Cancer Center

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: C57 BL/6J

characteristic: host strain

text: Mus musculus

text: bladder urothelial cancer cells

text: bladder urothelial carcinoma xenograft

characteristic: tissue

text: Anti-PD-1 Responder

characteristic: treatment

text: Trp53, Rb1, PTEN mutations

characteristic: tumor cell genotype


text: live

text: Generic

text: C57 BL/6J

text: Mus musculus

text: bladder urothelial cancer cells

text: bladder urothelial carcinoma xenograft

text: Anti-PD-1 Non-responder

text: Trp53, Rb1, PTEN mutations


text: live

text: Generic

text: C57 BL/6J

text: Mus musculus

text: bladder urothelial cancer cells

text: bladder urothelial carcinoma xenograft

text: Control IgG2a

text: Control IgG2a

text: Trp53, Rb1, PTEN mutations


text: New York Genome Center

text: live

text: Generic

text: Adig

characteristic: genotype

text: TCRb, B220, Ter199, CD3

characteristic: magnetic depletion

text: Mus musculus

text: all live

characteristic: sorting conditions

text: Immune cells


characteristic: External Id

text: New York Genome Center

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Adig

text: TCRb, B220, Ter199, CD3

text: Mus musculus

text: GFP+ and live

text: Immune cells


text: IgG WT colon replicate 1

characteristic: Biological replicate

text: Weill Cornell Medicine

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

characteristic: host

text: Colon luminal contents

text: not applicable

text: IgG WT

characteristic: mouse genotype

text: mouse gut metagenome

text: Bacterial genomic DNA was extracted from colon luminal contents using the E.Z.N.A stool DNA kit (Omega Biotek). The V4 region of the 16S rRNA was PCR amplified and libraries were prepared for sequencing using standard Illumina 16S Metagenomic Sequencing Library Preparation protocols. Paired-end reads were analyzed and classified into operational taxonomic units (OTUs) at > 97% identity level using Mothur v.1.40.5. Taxonomic assignments were determined using the SILVA 16S rRNA reference file release 132 and the Ribosomal Database Project (RDP) training set version 16.

text: IgG WT colon luminal contents

text: IgG WT 1, colon


text: IgG WT colon replicate 2

text: Weill Cornell Medicine

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: not collected

text: not applicable

text: Mus musculus

text: Colon luminal contents

text: not applicable

text: IgG WT

text: mouse gut metagenome

characteristic: organism

text: SILVA 16S rRNA reference file release 132

text: IgG WT colon luminal contents

text: IgG WT 2, colon

characteristic: title


text: IgG WT colon replicate 3

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: not collected

text: not applicable

text: Mus musculus

text: Colon luminal contents

text: not applicable

text: IgG WT

text: mouse gut metagenome

text: IgG WT colon luminal contents

text: IgG WT 3, colon


text: IgG WT colon replicate 4

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Colon luminal contents

text: not applicable

text: IgG WT

text: mouse gut metagenome

text: IgG WT colon luminal contents

text: IgG WT 4, colon


text: IgG WT colon replicate 5

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Colon luminal contents

text: not applicable

text: IgG WT

text: mouse gut metagenome

text: IgG WT colon luminal contents

text: IgG WT 5, colon


text: IgG -/- colon replicate 1

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Colon luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG -/- colon luminal contents

text: IgG-/- 1, colon


text: IgG -/- colon replicate 2

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Colon luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG -/- colon luminal contents

text: IgG-/- 2, colon


text: IgG -/- colon replicate 3

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Colon luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG -/- colon luminal contents

text: IgG-/- 3, colon


text: IgG -/- colon replicate 4

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Colon luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG -/- colon luminal contents

text: IgG-/- 4, colon


text: IgG -/- colon replicate 5

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Colon luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG -/- colon luminal contents

text: IgG-/- 5, colon


text: IgG -/- colon replicate 6

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Colon luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG -/- colon luminal contents

text: IgG-/- 6, colon


text: IgG -/- colon replicate 7

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Colon luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG -/- colon luminal contents

text: IgG-/- 7, colon


text: IgG WT SI replicate 1

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG WT

text: mouse gut metagenome

text: IgG WT small intestine luminal contents

text: IgG WT 1, small intestine


text: IgG WT SI replicate 2

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG WT

text: mouse gut metagenome

text: IgG WT small intestine luminal contents

text: IgG WT 2, small intestine


text: IgG WT SI replicate 3

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG WT

text: mouse gut metagenome

text: IgG WT small intestine luminal contents

text: IgG WT 3, small intestine


text: IgG WT SI replicate 4

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG WT

text: mouse gut metagenome

text: IgG WT small intestine luminal contents

text: IgG WT 4, small intestine


text: IgG WT SI replicate 5

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG WT

text: mouse gut metagenome

text: IgG WT small intestine luminal contents

text: IgG WT 5, small intestine


text: IgG -/- SI replicate 1

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG -/- small intestine luminal contents

text: IgG-/- 1, small intestine


text: IgG -/- SI replicate 2

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 2, small intestine


text: IgG -/- SI replicate 3

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 3, small intestine


text: IgG -/- SI replicate 4

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 4, small intestine


text: IgG -/- SI replicate 5

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 5, small intestine


text: IgG -/- SI replicate 6

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 6, small intestine


text: IgG -/- SI replicate 7

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Small intestine luminal contents

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 7, small intestine


text: Evandro Chagas Institute - IEC

text: live

text: Pathogen.env

text: IEC,SABMI

text: Brazil:Para State, Guajara Bay

text: river water

text: 1.4742596 S 48.5057271 W

text: Klebsiella pneumoniae

characteristic: strain

text: Pathogen: environmental/food/other sample from Klebsiella pneumoniae


text: WT Day -14 replicate 1

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day -14 (before cohousing)

characteristic: Timepoint

text: IgG-/- and WT mice were cohoused for two weeks, then treated with DSS for 1 week

characteristic: Treatment

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 1, day -14


text: WT Day -14 replicate 2

characteristic: External Id

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day -14 (before cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 2, day -14


text: WT Day -14 replicate 3

text: Weill Cornell Medicine

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: Day -14 (before cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 3, day -14


text: WT Day -14 replicate 4

text: Weill Cornell Medicine

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: Day -14 (before cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 4, day -14


text: WT Day -14 replicate 5

characteristic: Biological replicate

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day -14 (before cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 5, day -14


text: IgG-/- Day -14 replicate 1

text: Weill Cornell Medicine

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: Day -14 (before cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 1, day -14


text: IgG-/- Day -14 replicate 2

text: Weill Cornell Medicine

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Day -14 (before cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 2, day -14


text: IgG-/- Day -14 replicate 3

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day -14 (before cohousing)

text: not collected

text: not applicable

text: Mus musculus

characteristic: host

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 3, day -14


text: IgG-/- Day -14 replicate 4

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day -14 (before cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

characteristic: mouse genotype

text: mouse gut metagenome

text: IgG-/- 4, day -14


text: IgG-/- Day -14 replicate 5

text: Weill Cornell Medicine

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Day -14 (before cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 5, day -14


text: WT Day 0 replicate 1

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Day 0 (after cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 1, day 0


text: WT Day 0 replicate 2

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: Day 0 (after cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 2, day 0


text: WT Day 0 replicate 3

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day 0 (after cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

characteristic: organism

text: Wildtype 3, day 0


text: WT Day 0 replicate 4

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day 0 (after cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 4, day 0

characteristic: title


text: WT Day 0 replicate 5

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: Day 0 (after cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 5, day 0


text: IgG-/- Day 0 replicate 1

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day 0 (after cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 1, day 0


text: IgG-/- Day 0 replicate 2

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day 0 (after cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 2, day 0


text: IgG-/- Day 0 replicate 3

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day 0 (after cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 3, day 0


text: IgG-/- Day 0 replicate 4

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day 0 (after cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 4, day 0


text: IgG-/- Day 0 replicate 5

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day 0 (after cohousing)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 5, day 0


text: WT Day 7 replicate 1

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: Day 7 (after cohousing and DSS treatment)

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 1, day 7


text: WT Day 7 replicate 2

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 2, day 7


text: WT Day 7 replicate 3

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 3, day 7


text: WT Day 7 replicate 4

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Wildtype C57BL/6

text: mouse gut metagenome

text: Wildtype 4, day 7


text: IgG-/- Day 7 replicate 1

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 1, day 7


text: IgG-/- Day 7 replicate 2

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 2, day 7


text: IgG-/- Day 7 replicate 3

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 3, day 7


text: IgG-/- Day 7 replicate 4

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 4, day 7


text: IgG-/- Day 7 replicate 5

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: IgG-/-

text: mouse gut metagenome

text: IgG-/- 5, day 7


text: IgG+ bacteria replicate 1

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: IgG coated (IgG+) bacteria from 3-week-old SPF mice

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Germ-free wildtype C57BL/6

text: mouse gut metagenome

text: Bacterial genomic DNA was extracted from fecal pellets using the E.Z.N.A stool DNA kit (Omega Biotek). The V4 region of the 16S rRNA was PCR amplified and libraries were prepared for sequencing using standard Illumina 16S Metagenomic Sequencing Library Preparation protocols. Paired-end reads were analyzed and classified into operational taxonomic units (OTUs) at > 97% identity level using Mothur v.1.40.5. Taxonomic assignments were determined using the SILVA 16S rRNA reference file release 132 and the Ribosomal Database Project (RDP) training set version 16.

text: ExGF IgG+ bacteria 1


text: IgG+ bacteria replicate 2

text: Weill Cornell Medicine

text: live

text: Metagenome or environmental

text: not collected

text: not applicable

text: Mus musculus

text: Fecal pellets

text: not applicable

text: Germ-free wildtype C57BL/6

text: mouse gut metagenome

text: ExGF IgG+ bacteria 2