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text: TaqPath

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text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12514611/2021

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mako Medical

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

text: Homo sapiens

characteristic: host

characteristic: host age

text: A

text: female

text: nasal swab

characteristic: isolation source

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12514494/2021

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Mako Medical

characteristic: collected by

characteristic: collection date

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

characteristic: geo loc name

text: Homo sapiens

text: W

text: female

text: nasal swab

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12514229/2021

characteristic: External Id

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

text: Homo sapiens

characteristic: host disease

text: W

characteristic: host race

text: male

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12514120/2021

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mako Medical

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

text: Homo sapiens

characteristic: host

characteristic: host age

text: B

text: female

characteristic: host sex

characteristic: isolate

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12513342/2021

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Mako Medical

characteristic: collected by

characteristic: collection date

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

characteristic: geo loc name

text: Homo sapiens

text: W

text: female

text: nasal swab

characteristic: isolation source

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


characteristic: External Id

text: SARS-CoV-2/Human/USA/CO-CDC-MMB12512732/2021

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

text: Homo sapiens

text: O

text: female

text: nasal swab

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12510649/2021

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mako Medical

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

text: Homo sapiens

characteristic: host

characteristic: host age

characteristic: host disease

text: W

characteristic: host race

text: female

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12509138/2021

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Mako Medical

characteristic: collected by

characteristic: collection date

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

characteristic: geo loc name

text: Homo sapiens

text: W

text: male

characteristic: host sex

characteristic: isolate

text: nasal swab

text: baseline surveillance (random sampling)


characteristic: External Id

text: SARS-CoV-2/Human/USA/CO-CDC-MMB12509086/2021

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

text: Homo sapiens

text: W

text: male

text: nasal swab

characteristic: isolation source

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12506607/2021

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mako Medical

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

text: Homo sapiens

characteristic: host

characteristic: host age

text: W

text: female

text: nasal swab

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12506321/2021

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Mako Medical

characteristic: collected by

characteristic: collection date

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

characteristic: geo loc name

text: Homo sapiens

characteristic: host disease

text: W

characteristic: host race

text: male

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12505404/2021

characteristic: External Id

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

text: Homo sapiens

text: O

text: male

characteristic: host sex

characteristic: isolate

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12504082/2021

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mako Medical

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

text: Homo sapiens

characteristic: host

characteristic: host age

text: W

text: female

text: nasal swab

characteristic: isolation source

characteristic: lineage/clade name

text: Severe acute respiratory syndrome coronavirus 2

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CO-CDC-MMB12502478/2021

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Mako Medical

characteristic: collected by

characteristic: collection date

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Colorado

characteristic: geo loc name

text: Homo sapiens

text: W

text: male

text: nasal swab

characteristic: organism

text: baseline surveillance (random sampling)

text: CDC Sars CoV2 Sequencing Baseline Constellation

characteristic: title


text: SARS-CoV-2/Human/USA/CA-CDC-MMB12528494/2021

characteristic: External Id

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: California

text: Homo sapiens

characteristic: host disease

text: W

characteristic: host race

text: male

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CA-CDC-MMB12520271/2021

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mako Medical

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: California

text: Homo sapiens

characteristic: host

characteristic: host age

text: W

text: female

characteristic: host sex

characteristic: isolate

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CA-CDC-MMB12466027/2021

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Mako Medical

characteristic: collected by

characteristic: collection date

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: California

characteristic: geo loc name

text: Homo sapiens

text: O

text: female

text: nasal swab

characteristic: isolation source

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AZ-CDC-MMB12566717/2021

characteristic: External Id

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Arizona

text: Homo sapiens

text: W

text: female

text: nasal swab

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/AZ-CDC-MMB12566652/2021

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mako Medical

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Arizona

text: Homo sapiens

characteristic: host

characteristic: host age

characteristic: host disease

text: W

characteristic: host race

text: male

text: nasal swab

text: baseline surveillance (random sampling)


text: AMP-CFZ-CAZ-CRO-FEP-SAM-CIP-AMK-SXT

text: herbs

characteristic: IFSAC+ Category

text: New York State GenomeTrakr

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: MICROB-R

characteristic: collected by

characteristic: collection date

text: Chile

characteristic: geo loc name

text: parsley

text: parsley leaf (whole):FOODON_00002942

characteristic: ontological term

text: Escherichia coli

text: GenomeTrakr; LFFM-FY2

characteristic: project name

text: New York State Department of Health

text: food

characteristic: source type

text: food

characteristic: strain

text: Pathogen: environmental/food/other sample from Escherichia coli


text: AMP-CFZ-CAZ-CRO-FEP-SAM-CIP-SXT

characteristic: External Id

text: herbs

text: New York State GenomeTrakr

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: MICROB-R

text: Chile

text: parsley

characteristic: isolation source

text: parsley leaf (whole):FOODON_00002942

text: Escherichia coli

characteristic: organism

text: GenomeTrakr; LFFM-FY2

text: New York State Department of Health

text: food

text: food

characteristic: title


text: AMP-CFZ-CAZ-CRO-SAM

text: herbs

characteristic: IFSAC+ Category

text: New York State GenomeTrakr

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: MICROB-R

text: Chile

text: parsley

text: parsley leaf (whole):FOODON_00002942

text: Escherichia coli

text: GenomeTrakr; LFFM-FY2

text: New York State Department of Health

text: food

text: food


text: AMP-CFZ-CAZ-CRO-FEP-CIP-SXT

text: vegetable row crops (leafy)

text: New York State GenomeTrakr

text: live

text: Pathogen.env

text: MICROB-R

characteristic: collected by

characteristic: collection date

text: Chile

characteristic: geo loc name

text: lettuce

text: lettuce head food product:FOODON_00001998

characteristic: ontological term

text: Escherichia coli

text: GenomeTrakr; LFFM-FY2

text: New York State Department of Health

text: food

text: food


text: AMP-CFZ-CAZ-CRO-FEP-ETP-SAM-CIP-AMK-SXT

characteristic: External Id

text: herbs

text: New York State GenomeTrakr

text: live

text: Pathogen.env

text: MICROB-R

text: Chile

text: parsley

text: parsley leaf (whole):FOODON_00002942

text: Escherichia coli

text: GenomeTrakr; LFFM-FY2

characteristic: project name

text: New York State Department of Health

text: food

characteristic: source type

text: food

characteristic: strain


text: AMP-CFZ-CAZ-CRO-SAM-CIP-SXT

text: herbs

text: New York State GenomeTrakr

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: MICROB-R

text: Chile

text: parsley

text: parsley leaf (whole):FOODON_00002942

text: Escherichia coli

text: GenomeTrakr; LFFM-FY2

text: New York State Department of Health

text: food

text: food


text: AMP-CFZ-CAZ-STX

text: vegetable row crops (leafy)

text: New York State GenomeTrakr

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: MICROB-R

text: Chile

text: chard

characteristic: isolation source

text: swiss chard leaf (whole| raw):FOODON_03306698

text: Escherichia coli

characteristic: organism

text: GenomeTrakr; LFFM-FY2

text: New York State Department of Health

text: food

text: food

characteristic: title


text: AMP-CFZ-CAZ-SXT

text: vegetable row crops (leafy)

characteristic: IFSAC+ Category

text: New York State GenomeTrakr

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: MICROB-R

text: Chile

text: chard

text: Escherichia coli

text: GenomeTrakr; LFFM-FY2

text: New York State Department of Health

text: food

text: food


text: AMP-CFZ-CRO-FEP-FOF-SXT

text: root/underground (roots)

text: New York State GenomeTrakr

text: live

text: Pathogen.env

text: MICROB-R

characteristic: collected by

characteristic: collection date

text: Chile

characteristic: geo loc name

text: beet

text: beetroot (whole):FOODON_03317254

characteristic: ontological term

text: Escherichia coli

text: GenomeTrakr; LFFM-FY2

text: New York State Department of Health

text: food

text: food


characteristic: External Id

text: University of Science and Technology of China

text: live

text: Generic

text: Homo sapiens

text: Normal human blood

text: normal; control

characteristic: subject status

text: peripheral blood

characteristic: tissue


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: Human blood with calcification

text: coronary arterial calcification (CAC) patient

text: peripheral blood


text: UBC

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: diet

text: Canada: Vancouver

text: Mus musculus

characteristic: host

text: fecal pellet

text: 49.26 N 123.24 W

text: mouse gut metagenome

text: Metagenome or environmental sample from mouse gut metagenome

characteristic: uniqueID


text: UBC

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: inulin

text: Canada: Vancouver

text: Mus musculus

text: fecal pellet

text: 49.26 N 123.24 W

text: mouse gut metagenome

characteristic: organism

characteristic: title


text: UBC

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: guargum

text: Canada: Vancouver

text: Mus musculus

text: fecal pellet

text: 49.26 N 123.24 W

text: mouse gut metagenome


text: UBC

text: live

text: Metagenome or environmental

text: ResistantStarch

text: Canada: Vancouver

text: Mus musculus

text: fecal pellet

text: 49.26 N 123.24 W

text: mouse gut metagenome


text: UBC

text: live

text: Metagenome or environmental

text: pectin

text: Canada: Vancouver

text: Mus musculus

text: fecal pellet

text: 49.26 N 123.24 W

text: mouse gut metagenome


text: UBC

text: live

text: Metagenome or environmental

text: cellulose

text: Canada: Vancouver

text: Mus musculus

text: fecal pellet

text: 49.26 N 123.24 W

text: mouse gut metagenome


text: UBC

text: live

text: Metagenome or environmental

text: zerofibre

text: Canada: Vancouver

text: Mus musculus

text: fecal pellet

text: 49.26 N 123.24 W

text: mouse gut metagenome


text: NYAG

text: veterinary clinical/research| chicken

characteristic: IFSAC+ Category

text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: Pathogen.env

text: UNIETAR

characteristic: collected by

text: Ecuador:Pichincha

characteristic: geo loc name

text: caecum content (Gallus gallus domesticus)

characteristic: isolation source

text: caecum:UBERON_0001153| chicken:FOODON_03411457| composition:PATO_0000025

characteristic: ontological term

text: Campylobacter coli

text: GenomeTrakr; LFFM-FY2

characteristic: project name

text: New York State Department of Agriculture and Markets

text: animal

characteristic: source type

characteristic: strain

text: Campylobacter coli


characteristic: External Id

text: environmental-retail

text: CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: Food safety Labs, University of Pretoria

characteristic: collection date

text: Listeria

characteristic: genus

text: South Africa

text: retailer

text: Listeria monocytogenes

text: GenomeTrakr

text: FDA Center for Food Safety and Applied Nutrition

characteristic: sequenced by

text: environmental

text: monocytogenes

characteristic: species

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: environmental-factory/production facility| environmental-water

characteristic: IFSAC+ Category

text: CFSAN

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

characteristic: collected by

text: Salmonella

text: South Africa

characteristic: geo loc name

text: water from irrigation pivot point

characteristic: isolation source

text: water:CHEBI_15377| irrigation:CURATION_0000309| point:SIO_000507

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: environmental

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica

characteristic: title


characteristic: Age

characteristic: Animal ID

characteristic: External Id

text: Alpha

characteristic: Farm

text: Universitat Autonoma de Barcelona

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Spain: Lleida

text: Sus scrofa domesticus

characteristic: host

text: feces

text: 41.55 N 0.89 E

text: pig gut metagenome

text: Metagenome or environmental sample from pig gut metagenome


text: Beta

text: Universitat Autonoma de Barcelona

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Spain: Lleida

text: Sus scrofa domesticus

text: feces

text: 41.55 N 0.89 E

text: pig gut metagenome


text: pw

text: Alpha

text: Universitat Autonoma de Barcelona

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Spain: Lleida

text: Sus scrofa domesticus

text: feces

text: 41.55 N 0.89 E

text: pig gut metagenome


text: pw

text: Beta

text: Universitat Autonoma de Barcelona

text: live

text: Metagenome or environmental

text: Spain: Lleida

text: Sus scrofa domesticus

text: feces

text: 41.55 N 0.89 E

text: pig gut metagenome


text: Charlie

text: Universitat Autonoma de Barcelona

text: live

text: Metagenome or environmental

text: Spain: Lleida

text: Sus scrofa domesticus

text: feces

text: 41.55 N 0.89 E

text: pig gut metagenome


text: Delta

text: Universitat Autonoma de Barcelona

text: live

text: Metagenome or environmental

text: Spain: Lleida

text: Sus scrofa domesticus

text: feces

text: 41.55 N 0.89 E

text: pig gut metagenome


text: Echo

text: Universitat Autonoma de Barcelona

text: live

text: Metagenome or environmental

text: Spain: Lleida

text: Sus scrofa domesticus

text: feces

text: 41.55 N 0.89 E

text: pig gut metagenome


text: Foxtrot

text: Universitat Autonoma de Barcelona

text: live

text: Metagenome or environmental

text: Spain: Lleida

text: Sus scrofa domesticus

text: feces

text: 41.55 N 0.89 E

text: pig gut metagenome


text: mollusks (bi-valve)

characteristic: IFSAC+ Category

text: live

characteristic: IsolatDate

characteristic: NCBI bioproject

text: Pathogen.env

text: Vibrio parahaemolyticus

text: Pathogen:Environmental/Food/Other

text: New Jersey Department of Health

characteristic: collected by

characteristic: collection date

text: Vibrio

characteristic: genus

text: USA:NJ

characteristic: geo loc name

text: oyster

characteristic: ontological term

text: Vibrio parahaemolyticus

text: GenomeTrakr; LFFM-FY2

characteristic: project name

text: New Jersey Department of Health

text: food

characteristic: source type

text: parahaemolyticus

characteristic: species

characteristic: strain

text: Pathogen: environmental/food/other sample from Vibrio parahaemolyticus


characteristic: External Id

text: mollusks (bi-valve)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: Vibrio parahaemolyticus

text: Pathogen:Environmental/Food/Other

text: New Jersey Department of Health

text: Vibrio

text: USA:NJ

text: hard clam

characteristic: isolation source

text: mercenaria campechiensis:NCBITAXON_115816

text: Vibrio parahaemolyticus

characteristic: organism

text: GenomeTrakr; LFFM-FY2

text: New Jersey Department of Health

text: food

text: parahaemolyticus

characteristic: title


text: mollusks (bi-valve)

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

characteristic: IsolatDate

characteristic: NCBI bioproject

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: New Jersey Department of Health

text: Vibrio parahaemolyticus

characteristic: SRA accession

text: USA

characteristic: SourceCountry

text: USA:NJ

characteristic: SourceCountryState

text: Hard Clam

characteristic: SourceSite

text: NJ

characteristic: SourceState

text: food

characteristic: SourceType

text: Pathogen:Environmental/Food/Other

text: New Jersey Department of Health

characteristic: collected by

text: Vibrio

text: USA:NJ

text: hard clam

text: NJ

characteristic: lab id

text: Vibrio parahaemolyticus

text: GenomeTrakr; LFFM-FY2

text: New Jersey Department of Health

text: food

text: parahaemolyticus


characteristic: External Id

text: mollusks (bi-valve)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: New Jersey Department of Health

text: Vibrio parahaemolyticus

text: USA

text: USA:NJ

text: oyster

text: NJ

text: food

text: Pathogen:Environmental/Food/Other

text: New Jersey Department of Health

characteristic: collection date

text: Vibrio

characteristic: genus

text: USA:NJ

characteristic: geo loc name

text: oyster

characteristic: isolation source

text: NJ

characteristic: ontological term

text: Vibrio parahaemolyticus

text: GenomeTrakr; LFFM-FY2

characteristic: project name

text: New Jersey Department of Health

text: food

characteristic: source type

text: parahaemolyticus

characteristic: species

characteristic: strain


text: mollusks (bi-valve)

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

characteristic: IsolatDate

characteristic: NCBI bioproject

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: New Jersey Department of Health

text: Vibrio parahaemolyticus

characteristic: SRA accession

text: USA

characteristic: SourceCountry

text: USA:NJ

characteristic: SourceCountryState

text: oyster

characteristic: SourceSite

text: NJ

characteristic: SourceState

text: food

characteristic: SourceType

text: Pathogen:Environmental/Food/Other

text: New Jersey Department of Health

text: Vibrio

text: USA:NJ

text: oyster

text: NJ

text: Vibrio vulnificus

characteristic: organism

text: GenomeTrakr; LFFM-FY2

text: New Jersey Department of Health

text: food

text: parahaemolyticus

characteristic: title


characteristic: External Id

text: mollusks (bi-valve)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: New Jersey Department of Health

text: Vibrio parahaemolyticus

text: USA

text: USA:NJ

text: Hard Clam

text: NJ

text: food

text: Pathogen:Environmental/Food/Other

text: New Jersey Department of Health

characteristic: collected by

characteristic: collection date

text: Vibrio

characteristic: genus

text: USA:NJ

characteristic: geo loc name

text: hard clam

characteristic: isolation source

text: NJ

characteristic: lab id

characteristic: ontological term

text: Vibrio vulnificus

text: GenomeTrakr; LFFM-FY2

characteristic: project name

text: New Jersey Department of Health

text: food

characteristic: source type

text: parahaemolyticus


text: mollusks (bi-valve)

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

characteristic: IsolatDate

characteristic: NCBI bioproject

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: New Jersey Department of Health

text: Vibrio vulnificus

characteristic: SRA accession

text: USA

characteristic: SourceCountry

text: USA:NJ

characteristic: SourceCountryState

text: oyster

characteristic: SourceSite

text: NJ

characteristic: SourceState

text: food

characteristic: SourceType

text: Pathogen:Environmental/Food/Other

text: New Jersey Department of Health

text: Vibrio

text: USA:NJ

text: oyster

text: NJ

text: Vibrio vulnificus

text: GenomeTrakr; LFFM-FY2

text: New Jersey Department of Health

text: food

text: vulnificus

characteristic: species

characteristic: strain

text: Pathogen: environmental/food/other sample from Vibrio vulnificus


characteristic: External Id

text: Universidad Nacional de Colombia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Invertebrate

text: Not collected

text: Backcross progeny of parental individuals HWB29 and F1-8; F1-8 is the progeny of parental wild-type individuals HWB29 and HWB53

characteristic: description

text: Not applicable

text: Backcross individual 3

characteristic: isolate

text: Laboratory culture

text: Hydractinia symbiolongicarpus

characteristic: organism

text: Colony

characteristic: tissue

text: Invertebrate sample from Hydractinia symbiolongicarpus

characteristic: title


text: Universidad Nacional de Colombia

characteristic: INSDC secondary accession

text: live

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Not collected

text: Not applicable

text: Backcross individual 15

text: Laboratory culture

text: Hydractinia symbiolongicarpus

text: Colony


text: Room 470, Pharmacy, Univ of Florida

text: live

text: Generic

text: TSA 500nM

characteristic: agent

text: Mus musculus

text: pancreatic acinar cells

text: Day 4 – TSA 500nM rep. 3


text: Room 470, Pharmacy, Univ of Florida

text: live

text: Generic

text: TSA 500nM

text: Mus musculus

text: pancreatic acinar cells

text: Day 4 – TSA 500nM rep. 2


text: Room 470, Pharmacy, Univ of Florida

text: live

text: Generic

text: TSA 500nM

text: Mus musculus

text: pancreatic acinar cells

text: Day 4 – TSA 500nM rep. 1


text: Room 470, Pharmacy, Univ of Florida

text: live

text: Generic

text: LLL12B 500nM

text: Mus musculus

text: pancreatic acinar cells

text: Day 4 – LLL12B 500nM rep. 3


text: Room 470, Pharmacy, Univ of Florida

text: live

text: Generic

text: LLL12B 500nM

text: Mus musculus

text: pancreatic acinar cells

text: Day 4 – LLL12B 500nM rep. 2


text: Room 470, Pharmacy, Univ of Florida

text: live

text: Generic

text: LLL12B 500nM

text: Mus musculus

text: pancreatic acinar cells

text: Day 4 – LLL12B 500nM rep. 1


text: Room 470, Pharmacy, Univ of Florida

text: live

text: Generic

text: Control

text: Mus musculus

text: pancreatic acinar cells

text: Day 4 – Control rep. 3


text: Room 470, Pharmacy, Univ of Florida

text: live

text: Generic

text: Control

text: Mus musculus

text: pancreatic acinar cells

text: Day 4 – Control rep. 2


text: Room 470, Pharmacy, Univ of Florida

text: live

text: Generic

text: Control

text: Mus musculus

text: pancreatic acinar cells

text: Day 4 – Control rep. 1


text: Fudan University

text: live

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

characteristic: host

text: 7-day-DSS-treated WT mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 1

characteristic: replicate

text: Metagenome or environmental sample from gut metagenome


characteristic: External Id

text: Fudan University

text: live

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

text: 7-day-DSS-treated WT mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 2


text: Fudan University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

text: 7-day-DSS-treated WT mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 3


text: Fudan University

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

text: 7-day-DSS-treated WT mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 4


text: Fudan University

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

text: 7-day-DSS-treated WT mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 5


text: Fudan University

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

text: 7-day-DSS-treated WT mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 6


text: Fudan University

text: live

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

text: 7-day-DSS-treated KO mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 1


text: Fudan University

text: live

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

text: 7-day-DSS-treated KO mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 2


text: Fudan University

text: live

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

text: 7-day-DSS-treated KO mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 3


text: Fudan University

text: live

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

text: 7-day-DSS-treated KO mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 4


text: Fudan University

text: live

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

text: 7-day-DSS-treated KO mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 5


text: Fudan University

text: live

text: Metagenome or environmental

text: China:Shanghai

text: Mus musculus

text: 7-day-DSS-treated KO mice

text: 31.19 N 121.43 E

text: gut metagenome

text: biological replicate 6


unclassified sequences S01 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

characteristic: Residual chlorine (mg/L)

text: China:Jiaxing

text: not applicable

text: 30.7 N 120.78 E

text: drinking water metagenome

text: Metagenome or environmental sample from drinking water metagenome


unclassified sequences S02 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.7 N 120.78 E

text: drinking water metagenome


unclassified sequences S03 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.7 N 120.78 E

text: drinking water metagenome


unclassified sequences TW01 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.68 N 120.78 E

text: drinking water metagenome


unclassified sequences TW02 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.75 N 120.79 E

text: drinking water metagenome


unclassified sequences TW03 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.78 N 120.79 E

text: drinking water metagenome


unclassified sequences TW04 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.67 N 120.81 E

text: drinking water metagenome


unclassified sequences TW05 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.75 N 120.81 E

text: drinking water metagenome


unclassified sequences TW06 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.73 N 120.82 E

text: drinking water metagenome


unclassified sequences TW07 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.78 N 120.75 E

text: drinking water metagenome


unclassified sequences TW08 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.74 N 120.83 E

text: drinking water metagenome


unclassified sequences TW09 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.67 N 120.86 E

text: drinking water metagenome


unclassified sequences TW10 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.71 N 120.86 E

text: drinking water metagenome


unclassified sequences TW11 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.65 N 120.72 E

text: drinking water metagenome


unclassified sequences TW12 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.65 N 120.72 E

text: drinking water metagenome


unclassified sequences TW13 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.75 N 120.8 E

text: drinking water metagenome


unclassified sequences TW14 metagenome

text: Tongji University

text: live

text: Metagenome or environmental

text: China:Jiaxing

text: not applicable

text: 30.71 N 120.93 E

text: drinking water metagenome


Siddiqui

text: National Institute for Biotechnology and genetic Engineering (NIBGE)

text: live

text: Plant

text: 40 DAS

characteristic: age

characteristic: cultivar

text: Vegetative

text: Triple gene

characteristic: ecotype

text: Pakistan

characteristic: isolate

text: Gossypium hirsutum

text: Leaf

text: NIBGE triple gene cotton


text: China Agricultural University

characteristic: INSDC secondary accession

text: live

text: Invertebrate

characteristic: breed

text: China

text: Platymeris biguttatus

characteristic: organism

text: anterior main gland

characteristic: tissue

text: Invertebrate sample from Platymeris biguttatus

characteristic: title


text: China Agricultural University

text: live

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: China

characteristic: host

text: Platymeris biguttatus

text: posterior main gland


characteristic: External Id

text: China Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Invertebrate

text: China

text: Platymeris biguttatus

text: accessory gland


text: beef

characteristic: IFSAC+ Category

text: PulseNet Next Generation Subtyping Methods Unit

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: Missouri State Public Health Laboratory

characteristic: collected by

characteristic: collection date

text: USA:MO

characteristic: geo loc name

text: beef trim

characteristic: isolation source

text: beef trim:FOODON_03311508

characteristic: ontological term

text: Escherichia coli

text: GenomeTrakr; LFFM-FY2

text: Missouri State Public Health Laboratory

characteristic: serovar

text: food

characteristic: source type

characteristic: strain

text: Escherichia coli


text: environmental

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Missouri State Public Health Laboratory

text: USA:MO

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr; LFFM-FY2

text: Missouri State Public Health Laboratory

text: environmental

text: Listeria monocytogenes

characteristic: title


characteristic: External Id

text: veterinary clinical/research

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: SRA accession

text: Missouri State Public Health Laboratory

text: USA:MO

text: Salmonella enterica

text: GenomeTrakr; LFFM-FY2

text: Missouri State Public Health Laboratory

text: Kentucky

text: animal

text: Salmonella enterica


text: veterinary clinical/research

characteristic: IFSAC+ Category

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: Missouri State Public Health Laboratory

characteristic: collected by

text: USA:MO

text: Salmonella enterica

text: GenomeTrakr; LFFM-FY2

text: Missouri State Public Health Laboratory

text: Abaetetuba

text: animal

text: Salmonella enterica


text: chicken

text: live

text: Pathogen.env

text: Missouri State Public Health Laboratory

characteristic: collection date

text: USA:MO

characteristic: geo loc name

text: ground chicken

characteristic: isolation source

text: chicken (ground or minced):FOODON_03311826

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr; LFFM-FY2

text: Missouri State Public Health Laboratory

text: Typhimurium

text: food

text: Salmonella enterica


text: environmental| chicken

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: Missouri State Public Health Laboratory

text: USA:MO

text: chicken rinse

text: chicken:FOODON_03411457| rinse:CURATION_0001629

text: Salmonella enterica

text: GenomeTrakr; LFFM-FY2

text: Missouri State Public Health Laboratory

text: Kentucky

characteristic: serovar

text: environmental

characteristic: source type

characteristic: strain

text: Salmonella enterica


text: beef

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Missouri State Public Health Laboratory

text: USA:MO

text: beef trim

text: beef trim:FOODON_03311508

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr; LFFM-FY2

text: Missouri State Public Health Laboratory

text: Montevideo

text: food

text: Salmonella enterica

characteristic: title


characteristic: External Id

text: veterinary clinical/research

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: SRA accession

text: Missouri State Public Health Laboratory

text: USA:MO

text: Salmonella enterica

text: GenomeTrakr; LFFM-FY2

text: Missouri State Public Health Laboratory

text: Norwich

text: animal

text: Salmonella enterica


text: mollusks (bi-valve)

characteristic: IFSAC+ Category

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: New Jersey Department of Health

characteristic: collected by

text: USA:NJ

text: oyster

text: Vibrio parahaemolyticus

text: GenomeTrakr; LFFM-FY2

characteristic: project name

text: New Jersey Department of Health

text: food


text: mollusks (bi-valve)

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: New Jersey Department of Health

characteristic: collection date

text: USA:NJ

characteristic: geo loc name

text: oyster

characteristic: isolation source

characteristic: ontological term

text: Vibrio vulnificus

text: GenomeTrakr; LFFM-FY2

text: New Jersey Department of Health

text: food


text: SARS-CoV-2/Human/USA/WV-CDC-MMB13624118/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mako Medical

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: West Virginia

text: Homo sapiens

characteristic: host

characteristic: host age

characteristic: host disease

text: male

characteristic: host sex

characteristic: isolate

text: nasal swab

characteristic: lineage/clade name

text: Severe acute respiratory syndrome coronavirus 2

text: baseline surveillance (random sampling)

text: CDC Sars CoV2 Sequencing Baseline Constellation


characteristic: External Id

text: SARS-CoV-2/Human/USA/WV-CDC-MMB13475237/2022

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: West Virginia

text: Homo sapiens

text: male

text: nasal swab

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/WV-CDC-MMB13473643/2022

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

text: Mako Medical

characteristic: collected by

characteristic: collection date

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: West Virginia

characteristic: geo loc name

text: Homo sapiens

text: female

text: nasal swab

characteristic: isolation source

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/WV-CDC-MMB13472128/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

text: Mako Medical

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: West Virginia

text: Homo sapiens

characteristic: host

characteristic: host age

characteristic: host disease

text: female

characteristic: host sex

text: nasal swab

text: baseline surveillance (random sampling)


characteristic: External Id

text: SARS-CoV-2/Human/USA/WV-CDC-MMB13465093/2022

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: West Virginia

text: Homo sapiens

text: male

characteristic: isolate

text: nasal swab

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/WV-CDC-MMB13463735/2022

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: SRA accession

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: West Virginia

text: Homo sapiens

text: female

text: nasal swab

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/WV-CDC-MMB13443540/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

text: Mako Medical

characteristic: collected by

characteristic: collection date

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: West Virginia

characteristic: geo loc name

text: Homo sapiens

text: male

text: nasal swab

characteristic: isolation source

text: baseline surveillance (random sampling)


characteristic: External Id

text: SARS-CoV-2/Human/USA/WV-CDC-MMB13440701/2022

text: CDC-OAMD

characteristic: INSDC center name

text: live

text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: West Virginia

text: Homo sapiens

characteristic: host

characteristic: host age

characteristic: host disease

text: male

characteristic: host sex

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/WI-CDC-MMB13606288/2022

text: CDC-OAMD

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Wisconsin

text: Homo sapiens

text: W

characteristic: host race

text: male

characteristic: isolate

text: nasal swab

characteristic: lineage/clade name

text: baseline surveillance (random sampling)


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text: CDC-OAMD

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characteristic: SRA accession

text: Mako Medical

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text: Nasal Swab

text: Nasal Swab

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text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Wisconsin

text: Homo sapiens

text: W

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text: CDC-OAMD

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text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

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text: Nasal Swab

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text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Wisconsin

characteristic: geo loc name

text: Homo sapiens

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text: SARS-CoV-2: clinical or host-associated

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text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Wisconsin

text: Homo sapiens

characteristic: host disease

text: nasal swab

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text: Mako Medical

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text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Wisconsin

text: Homo sapiens

text: W

characteristic: host race

text: female

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characteristic: collection date

text: Nasal Swab

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text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Wisconsin

text: Homo sapiens

text: W

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text: live

text: SARS-CoV-2: clinical or host-associated

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text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Wisconsin

characteristic: geo loc name

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text: Mako Medical

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text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Wisconsin

text: Homo sapiens

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text: W

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text: female

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text: CDC-OAMD

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text: Mako Medical

characteristic: collected by

characteristic: collection date

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Wisconsin

text: Homo sapiens

text: W

text: female

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text: Severe acute respiratory syndrome coronavirus 2

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/WI-CDC-MMB13529579/2022

text: CDC-OAMD

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text: live

text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

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text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Wisconsin

characteristic: geo loc name

text: Homo sapiens

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text: W

text: female

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text: CDC Sars CoV2 Sequencing Baseline Constellation

characteristic: title


text: SARS-CoV-2/Human/USA/WI-CDC-MMB13528712/2022

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text: Mako Medical

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text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Wisconsin

text: Homo sapiens

characteristic: host age

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text: baseline surveillance (random sampling)


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text: SARS-CoV-2/Human/USA/VA-CDC-MMB13698024/2022

text: CDC-OAMD

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text: live

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text: Mako Medical

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characteristic: collection date

text: Nasal Swab

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text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

text: male

characteristic: host sex

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/VA-CDC-MMB13698016/2022

text: CDC-OAMD

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text: live

text: SARS-CoV-2: clinical or host-associated

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

characteristic: geo loc name

text: Homo sapiens

text: female

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text: SARS-CoV-2/Human/USA/VA-CDC-MMB13697980/2022

text: CDC-OAMD

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text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

characteristic: host

text: female

text: nasal swab

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text: baseline surveillance (random sampling)

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text: SARS-CoV-2/Human/USA/VA-CDC-MMB13697977/2022

text: CDC-OAMD

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text: SARS-CoV-2: clinical or host-associated

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text: Mako Medical

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text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

characteristic: host age

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text: female

text: nasal swab

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text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/VA-CDC-MMB13697960/2022

text: CDC-OAMD

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text: Mako Medical

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characteristic: collection date

text: Nasal Swab

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text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

text: male

characteristic: host sex

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/VA-CDC-MMB13697794/2022

text: CDC-OAMD

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text: SARS-CoV-2: clinical or host-associated

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text: Mako Medical

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text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

characteristic: geo loc name

text: Homo sapiens

text: female

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text: CDC-OAMD

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text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission package

text: Mako Medical

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text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

characteristic: host

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text: nasal swab

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text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

characteristic: host age

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text: female

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text: SARS-CoV-2/Human/USA/VA-CDC-MMB13697720/2022

text: CDC-OAMD

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text: Mako Medical

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text: Nasal Swab

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text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

text: female

characteristic: host sex

text: nasal swab

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text: SARS-CoV-2/Human/USA/VA-CDC-MMB13697716/2022

text: CDC-OAMD

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text: TaqPath

text: TaqPath

text: TaqPath

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characteristic: geo loc name

text: Homo sapiens

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text: SARS-CoV-2/Human/USA/VA-CDC-MMB13697714/2022

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text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

characteristic: host

text: female

text: nasal swab

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text: SARS-CoV-2/Human/USA/VA-CDC-MMB13697708/2022

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text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

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text: male

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text: SARS-CoV-2/Human/USA/VA-CDC-MMB13697691/2022

characteristic: External Id

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text: Mako Medical

characteristic: collected by

characteristic: collection date

text: Nasal Swab

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text: Nasal Swab

text: N gene

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text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

text: male

characteristic: host sex

text: nasal swab

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text: SARS-CoV-2/Human/USA/VA-CDC-MMB13697682/2022

text: CDC-OAMD

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text: Mako Medical

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text: N gene

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text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

characteristic: geo loc name

text: Homo sapiens

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text: Severe acute respiratory syndrome coronavirus 2

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text: SARS-CoV-2/Human/USA/VA-CDC-MMB13697659/2022

text: CDC-OAMD

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text: SARS-CoV-2: clinical or host-associated

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text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

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text: male

text: nasal swab

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text: CDC-OAMD

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text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

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text: CDC-OAMD

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text: Nasal Swab

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text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

text: female

characteristic: host sex

text: nasal swab

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text: TaqPath

text: TaqPath

text: TaqPath

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characteristic: geo loc name

text: Homo sapiens

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text: CDC-OAMD

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text: TaqPath

text: TaqPath

text: TaqPath

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text: Homo sapiens

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text: nasal swab

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text: S gene

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text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

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text: female

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text: CDC-OAMD

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text: Mako Medical

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text: Nasal Swab

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text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

text: female

characteristic: host sex

text: nasal swab

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text: CDC-OAMD

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text: SARS-CoV-2: clinical or host-associated

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text: TaqPath

text: TaqPath

text: TaqPath

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characteristic: geo loc name

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text: TaqPath

text: TaqPath

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text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

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text: Mako Medical

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text: Nasal Swab

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text: Undetermined

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text: Homo sapiens

text: male

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text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

characteristic: geo loc name

text: Homo sapiens

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text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

characteristic: host age

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text: female

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text: CDC-OAMD

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characteristic: NCBI submission model

text: Mako Medical

characteristic: collected by

characteristic: collection date

text: Nasal Swab

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text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

text: W

characteristic: host race

text: female

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text: baseline surveillance (random sampling)


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characteristic: NCBI submission package

text: Mako Medical

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characteristic: collection method

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: male

characteristic: host sex

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/VA-CDC-MMB13644735/2022

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Mako Medical

text: Nasal Swab

text: Nasal Swab

text: N gene

text: S gene

text: Undetermined

text: TaqPath

text: TaqPath

text: TaqPath

text: TaqPath

text: USA: Virginia

text: Homo sapiens

characteristic: host age

characteristic: host disease

text: female

characteristic: isolate

text: nasal swab

characteristic: lineage/clade name

text: Severe acute respiratory syndrome coronavirus 2

text: baseline surveillance (random sampling)