text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: wound

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9718


status: PUBLIC

text: Pathogen.cl

tag: attribute

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center alias

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: MDRO Network

text: China

text: Homo sapiens

characteristic: host

text: not applicable

text: wound

text: not applicable

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa ARLG-9719

characteristic: strain

characteristic: title


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9727


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9728


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9731


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9735


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9736


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9737


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9742


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9743


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9744


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9748


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9749


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9750


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9751


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: urine

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9752


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9754


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9755


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9756


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9761


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9762


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: blood

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9763


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9764


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9767


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: blood

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9768


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Nicaragua

text: Homo sapiens

text: not applicable

text: wound

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9955


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Nicaragua

text: Homo sapiens

text: not applicable

text: wound

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9957


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Nicaragua

text: Homo sapiens

text: not applicable

text: wound

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9958


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Nicaragua

text: Homo sapiens

text: not applicable

text: wound

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9961


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Nicaragua

text: Homo sapiens

text: not applicable

text: wound

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9965


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Nicaragua

text: Homo sapiens

text: not applicable

text: wound

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9978


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Nicaragua

text: Homo sapiens

text: not applicable

text: wound

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9980


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Argentina

text: Homo sapiens

text: not applicable

text: blood

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9982


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Argentina

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9984


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Argentina

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9986


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Australia

text: Homo sapiens

text: not applicable

text: blood

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9389


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9769


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9771


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: China

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9773


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Chile

text: Homo sapiens

text: not applicable

text: blood

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9987


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Chile

text: Homo sapiens

text: not applicable

text: urine

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9989


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Chile

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9990


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Chile

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9991


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Chile

text: Homo sapiens

text: not applicable

text: respiratory

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9993


text: Pathogen.cl

text: public

text: NCBI

text: MDRO Network

text: Chile

text: Homo sapiens

text: not applicable

text: wound

text: not applicable

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa ARLG-9994


text: Metagenome or environmental

text: public

text: Section 1 uninoculated

characteristic: Location

text: Systematic

characteristic: Sampling pattern

text: NCBI

text: Tissue sample taken in a systematic pattern from the uninoculated portion of field section 1

characteristic: description

text: USA:California

text: Lactuca sativa L.

text: Lactuca sativa L. leaf tissue from field

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Section 1 uninoculated

text: Aggregative

text: NCBI

text: Swab sample taken from the uninoculated portion of field section 1

text: USA:California

text: Lactuca sativa L.

text: Polymer cloth swab of Lactuca sativa L. leaf from field

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: External Id

characteristic: INSDC center alias

characteristic: INSDC center name

text: public

text: Section 2 uninoculated, replicate

text: Aggregative

text: NCBI

text: Swab sample taken from the uninoculated portion of field section 2, replicate

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Section 3 uninoculated

text: Stratified random

text: NCBI

text: Tissue sample taken in a stratified random pattern from the uninoculated portion of field section 3

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

text: public

text: Section 2 inoculated

characteristic: SRA accession

text: Systematic

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: Tissue sample taken in a systematic pattern from the inoculated portion of field section 2

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

text: public

text: Section 2 inoculated

text: Aggregative

text: NCBI

text: Swab sample taken from the inoculated portion of field section 2

text: USA:California

text: Lactuca sativa L.

characteristic: host

text: not collected

text: food metagenome

characteristic: organism

text: food metagenome


text: Metagenome or environmental

text: public

text: Section 3 inoculated, replicate

characteristic: Location

text: Aggregative

text: NCBI

text: Swab sample taken from the inoculated portion of field section 3, replicate

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome

characteristic: title


text: Metagenome or environmental

text: public

text: Retail store uninoculated

text: Not applicable

characteristic: Sampling pattern

text: NCBI

text: Tissue sample of uninoculated retail store Romaine

characteristic: description

text: USA:California

text: Lactuca sativa L.

text: Lactuca sativa L. leaf tissue from retail store

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

text: public

text: Section 2 uninoculated

text: Systematic

text: NCBI

text: Tissue sample taken in a systematic pattern from the uninoculated portion of field section 2

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Section 2 uninoculated

text: Aggregative

text: NCBI

text: Swab sample taken from the uninoculated portion of field section 2

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: INSDC center alias

characteristic: INSDC center name

text: public

text: Section 3 uninoculated, replicate

text: Aggregative

text: NCBI

text: Swab sample taken from the uninoculated portion of field section 3, replicate

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Retail store uninoculated, second replicate

text: Not applicable

text: NCBI

text: Tissue sample of uninoculated retail store Romaine, second replicate

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

text: public

characteristic: INSDC status

text: Section 1 inoculated

characteristic: SRA accession

text: Systematic

text: NCBI

text: Tissue sample taken in a systematic pattern from the inoculated portion of field section 1

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

text: public

text: Section 1 inoculated

text: Aggregative

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: Swab sample taken from the inoculated portion of field section 1

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

text: public

text: Section 2 inoculated, replicate

text: Aggregative

text: NCBI

text: Swab sample taken from the inoculated portion of field section 2, replicate

text: USA:California

text: Lactuca sativa L.

characteristic: host

text: not collected

text: food metagenome

characteristic: organism

text: food metagenome


text: Metagenome or environmental

text: public

text: Section 3 inoculated

characteristic: Location

text: Stratified random

text: NCBI

text: Tissue sample taken in a stratified random pattern from the inoculated portion of field section 3

text: USA:California

text: Lactuca sativa L.

text: Lactuca sativa L. leaf tissue from field

text: not collected

text: food metagenome

text: food metagenome

characteristic: title


text: Metagenome or environmental

text: public

text: Section 3 uninoculated

text: Systematic

characteristic: Sampling pattern

text: NCBI

text: Tissue sample taken in a systematic pattern from the uninoculated portion of field section 3

characteristic: description

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

text: public

text: Section 3 uninoculated

text: Aggregative

text: NCBI

text: Swab sample taken from the uninoculated portion of field section 3

text: USA:California

text: Lactuca sativa L.

text: Polymer cloth swab of Lactuca sativa L. leaf from field

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Section 1 uninoculated

text: Stratified random

text: NCBI

text: Tissue sample taken in a stratified random pattern from the uninoculated portion of field section 1

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: INSDC center alias

characteristic: INSDC center name

text: public

text: Retail store inoculated, first replicate

text: Not applicable

text: NCBI

text: Tissue sample of inoculated retail store Romaine, first replicate

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Section 3 inoculated

text: Systematic

text: NCBI

text: Tissue sample taken in a systematic pattern from the inoculated portion of field section 3

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

text: public

characteristic: INSDC status

text: Section 3 inoculated

characteristic: SRA accession

text: Aggregative

text: NCBI

text: Swab sample taken from the inoculated portion of field section 3

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

text: public

text: Section 1 inoculated

text: Stratified random

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: Tissue sample taken in a stratified random pattern from the inoculated portion of field section 1

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

text: public

text: Retail store inoculated

text: Not applicable

text: NCBI

text: Tissue sample of inoculated retail store Romaine

text: USA:California

text: Lactuca sativa L.

characteristic: host

text: Lactuca sativa L. leaf tissue from retail store

text: not collected

text: food metagenome

characteristic: organism

text: food metagenome


text: Metagenome or environmental

text: public

text: Section 1 and 2 inoculated

characteristic: Location

text: Systematic

text: NCBI

text: Tissue sample taken in a systematic pattern from the inoculated portion of field section 1and 2

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome

characteristic: title


text: Metagenome or environmental

text: public

text: Section 1 inoculated, replicate

text: Aggregative

characteristic: Sampling pattern

text: NCBI

text: Swab sample taken from the inoculated portion of field section 1, replicate

characteristic: description

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

text: public

text: Section 2 inoculated

text: Stratified random

text: NCBI

text: Tissue sample taken in a stratified random pattern from the inoculated portion of field section 2

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Retail store inoculated, second replicate

text: Not applicable

text: NCBI

text: Tissue sample of inoculated retail store Romaine, second replicate

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: INSDC center alias

characteristic: INSDC center name

text: public

text: Section 3 inoculated, replicate

text: Systematic

text: NCBI

text: Tissue sample taken in a systematic pattern from the inoculated portion of field section 3, replicate

text: USA:California

text: Lactuca sativa L.

text: Lactuca sativa L. leaf tissue from field

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Section 1 uninoculated, replicate

text: Aggregative

text: NCBI

text: Swab sample taken from the uninoculated portion of field section 1, replicate

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: Metagenome or environmental

text: public

characteristic: INSDC status

text: Section 2 uninoculated

characteristic: SRA accession

text: Stratified random

text: NCBI

text: Tissue sample taken in a stratified random pattern from the uninoculated portion of field section 2

text: USA:California

text: Lactuca sativa L.

text: not collected

text: food metagenome

text: food metagenome


text: MIGS.ba

text: pda|kiranpreet@orcid

text: pda|kiranpreet@orcid

text: public

characteristic: Submitter Id

text: NCBI

characteristic: broker name

characteristic: depth

characteristic: elev

text: Wetland bogs

text: Wild cranberry bog

text: soil

text: USA: Provincetown, MA

text: Vaccinium macrocarpon

text: PMID: 30533844

text: soil

text: 42.070624 N 70.210548 W

text: Pseudomonas moorei

characteristic: strain

text: Microbe sample from Pseudomonas moorei


text: MIGS.ba

text: pda|kiranpreet@orcid

text: pda|kiranpreet@orcid

text: public

text: NCBI

text: Wetland bogs

text: Wild cranberry bog

text: Soil

text: USA: Truro, MA

text: PMID: 30533844

text: soil

text: 42.064742 N 70.117562 W

text: Pseudomonas sp. MWU13-2924

characteristic: organism

text: MIGS Cultured Bacterial/Archaeal sample from Pseudomonas sp.

characteristic: title


text: Human

characteristic: BioSampleModel

text: pda|rmeganck

text: pda|rmeganck

text: public

characteristic: Infection

characteristic: Passage

characteristic: age

text: Charles M. Rice, The Rockefeller University

text: NCBI

text: hepatocarcinoma

text: human

characteristic: common name

characteristic: isolate

text: Homo sapiens

text: cell culture

text: male

characteristic: sex

text: liver

characteristic: tissue

text: Unselected CRISPR library

text: lenti-CRISPRv2 based GeCKO library integrated in cells

characteristic: treatment


text: Human

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: pda|rmeganck

characteristic: INSDC center alias

text: pda|rmeganck

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SADS-CoV

characteristic: SRA accession

text: NCBI

text: hepatocarcinoma

text: human

text: Homo sapiens

text: cell culture

text: male

text: liver

text: CRISPR library infected with SAD-CoV, passage 1


text: Human

characteristic: BioSampleModel

text: pda|rmeganck

text: pda|rmeganck

text: public

text: SADS-CoV

characteristic: Infection

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: hepatocarcinoma

text: human

text: Homo sapiens

characteristic: organism

text: cell culture

text: male

text: liver

text: CRISPR library infected with SAD-CoV, passage 2

characteristic: title


text: Human

text: pda|rmeganck

text: pda|rmeganck

text: public

text: SADS-CoV

characteristic: Passage

characteristic: age

text: NCBI

text: hepatocarcinoma

text: human

characteristic: common name

characteristic: isolate

text: Homo sapiens

text: cell culture

text: male

characteristic: sex

text: liver

characteristic: tissue

text: CRISPR library infected with SAD-CoV, passage 3


text: Human

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: pda|rmeganck

characteristic: INSDC center alias

text: pda|rmeganck

characteristic: INSDC center name

text: public

text: SADS-CoV

text: NCBI

text: hepatocarcinoma

text: human

text: Homo sapiens

text: cell culture

text: male

text: liver

text: CRISPR library infected with SAD-CoV, passage 4

characteristic: treatment


text: SARS-CoV-2: clinical or host-associated

characteristic: BioSampleModel

text: pda|wiarln

text: pda|wiarln

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NCBI

text: Wisconsin State Laboratory of Hygiene

text: USA: Wisconsin, Dodge County

text: Homo sapiens

characteristic: host

text: clinical

text: Severe acute respiratory syndrome coronavirus 2

text: Surveillance

text: Baseline surveillance (random sampling)

text: RNA Re-Extraction (Post RT-PCR)


text: SARS-CoV-2: clinical or host-associated

text: pda|wiarln

text: pda|wiarln

text: public

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: Wisconsin State Laboratory of Hygiene

text: USA: Wisconsin, Winnebago County

text: Homo sapiens

text: clinical

characteristic: organism

text: Surveillance

text: Baseline surveillance (random sampling)

text: RNA Re-Extraction (Post RT-PCR)

characteristic: title


text: SARS-CoV-2: clinical or host-associated

text: pda|wiarln

text: pda|wiarln

text: public

text: NCBI

text: Wisconsin State Laboratory of Hygiene

text: USA: Wisconsin, Waukesha County

text: Homo sapiens

characteristic: isolate

text: clinical

text: Surveillance

text: Baseline surveillance (random sampling)

text: RNA Re-Extraction (Post RT-PCR)


text: SARS-CoV-2: clinical or host-associated

characteristic: ENA-FIRST-PUBLIC

text: pda|wiarln

text: pda|wiarln

text: public

text: NCBI

text: Wisconsin State Laboratory of Hygiene

text: USA: Wisconsin, Jefferson County

text: Homo sapiens

text: clinical

text: Surveillance

text: Baseline surveillance (random sampling)

text: RNA Re-Extraction (Post RT-PCR)


text: SARS-CoV-2: clinical or host-associated

characteristic: ENA-LAST-UPDATE

text: pda|wiarln

text: pda|wiarln

text: public

text: NCBI

text: Wisconsin State Laboratory of Hygiene

text: USA: Wisconsin, Polk County

text: Homo sapiens

text: clinical

text: Surveillance

text: Baseline surveillance (random sampling)

text: RNA Re-Extraction (Post RT-PCR)


text: SARS-CoV-2: clinical or host-associated

characteristic: External Id

text: pda|wiarln

text: pda|wiarln

text: public

text: NCBI

text: Wisconsin State Laboratory of Hygiene

text: USA: Wisconsin

text: Homo sapiens

text: clinical

text: Surveillance

text: Baseline surveillance (random sampling)

text: RNA Re-Extraction (Post RT-PCR)


text: SARS-CoV-2: clinical or host-associated

text: pda|mohammed-allam@uiowa.edu

characteristic: INSDC center alias

text: pda|mohammed-allam@uiowa.edu

text: public

text: NCBI

text: State Hygienic Laboratory at the University of Iowa

text: USA: Iowa

text: Homo sapiens

text: clinical

text: Baseline surveillance


text: SARS-CoV-2: clinical or host-associated

text: pda|mohammed-allam@uiowa.edu

text: pda|mohammed-allam@uiowa.edu

characteristic: INSDC center name

text: public

text: NCBI

text: University of Iowa Hospitals and Clinics

text: USA: Iowa

text: Homo sapiens

text: clinical

text: Baseline surveillance


text: SARS-CoV-2: clinical or host-associated

text: pda|wiarln

text: pda|wiarln

text: public

text: NCBI

text: Wisconsin State Laboratory of Hygiene

text: USA: Wisconsin, Sheboygan County

text: Homo sapiens

text: clinical

text: Surveillance

text: Baseline surveillance (random sampling)

text: RNA Re-Extraction (Post RT-PCR)


text: SARS-CoV-2: clinical or host-associated

text: pda|wiarln

text: pda|wiarln

text: public

text: NCBI

text: Wisconsin State Laboratory of Hygiene

text: USA: Wisconsin, Taylor County

text: Homo sapiens

text: clinical

text: Surveillance

text: Baseline surveillance (random sampling)

text: RNA Re-Extraction (Post RT-PCR)


text: SARS-CoV-2: clinical or host-associated

text: pda|wiarln

text: pda|wiarln

text: public

text: NCBI

text: Wisconsin State Laboratory of Hygiene

text: USA: Wisconsin, Pepin County

text: Homo sapiens

text: clinical

text: Surveillance

text: Baseline surveillance (random sampling)

text: RNA Re-Extraction (Post RT-PCR)


text: Microbe, viral or environmental

text: pda|kgall@d.umn.edu

text: pda|kgall@d.umn.edu

text: public

characteristic: MLST

text: NCBI

text: USA

text: Homo sapiens

text: stool

text: Clostridioides difficile

characteristic: strain

text: Clostridioides difficile


Sugarcane vinasse

text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: INSDC first public

text: public

text: Sugarcane vinasse

text: NCBI

text: Brazil: Sao Paulo

text: not applicable

text: not collected

text: Sugarcane vinasse

text: 22.01 S 47.53 W

text: plant metagenome

text: mixed culture

text: not collected

text: plant metagenome


text: Viral

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NCBI

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: Human endogenous retrovirus K

text: Human endogenous retrovirus K


text: SARS-CoV-2: clinical or host-associated

text: pda|mohammed-allam@uiowa.edu

text: pda|mohammed-allam@uiowa.edu

text: public

characteristic: SRA accession

text: NCBI

text: USA: Illinois

text: Homo sapiens

characteristic: host

text: clinical

text: Baseline surveillance


text: public

characteristic: Submitter Id

text: none (input)

characteristic: antibody

text: NCBI

characteristic: broker name

text: hTSC CT27

characteristic: cell line

text: Human trophoblast stem cells

characteristic: cell type

text: human

characteristic: common name

text: Homo sapiens

text: hTSC CT27

text: hTSC, ChIP, Input


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: anti-H3K4me3 (Diagenode C15410003)

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

characteristic: organism

text: hTSC CT27

text: hTSC, ChIP, H3K4me3

characteristic: title


text: public

text: anti-H3K4me1 (Abcam ab8895)

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, ChIP, H3K4me1


text: public

text: anti-H3K27ac (Diagenode C15410196)

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, ChIP, H3K27ac


text: public

text: NCBI

text: LB

characteristic: media

text: synthetic construct

text: Untreated _ Control

characteristic: stress


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: NCBI

text: WT (T3SS+; exlA-)

characteristic: genotype

text: LB

text: Pseudomonas aeruginosa PAO1

text: Untreated _ exponential growth _ 37C


text: public

characteristic: INSDC status

characteristic: SRA accession

text: NCBI

text: WT JR32 Philadelphia-1 (LPDL5)

text: AYE

text: Legionella pneumophila

text: Untreated _ exponential growth _ 37C


text: public

characteristic: Submitter Id

text: NCBI

text: WT HG001 (AEs1)

text: BHI

text: Staphylococcus aureus

text: Untreated _ exponential growth _ 37C


text: public

text: NCBI

characteristic: broker name

text: WT

text: LB

text: Escherichia coli str. K-12 substr. MG1655

characteristic: strain

text: Untreated _ exponential growth _ 37C (Reference, R)

characteristic: substrain


text: public

text: NCBI

text: Mut. rne-3071 ts (EM1277)

text: LB

text: RNaseE-.E.coli

text: Heat shock (30C to 44C) _ RNase E inhibition


text: public

text: NCBI

text: WT

text: LB

text: Treated with rifampicin (R) _ 37C


text: public

text: NCBI

text: WT

text: LB

text: Treated with chloramphenicol (R) _ 37C


text: public

text: NCBI

text: WT

text: LB

text: Untreated _ stationary growth _ 37C


text: public

text: anti-TFAP2C (Santa Cruz sc-12762)

characteristic: antibody

text: NCBI

text: hTSC CT29

characteristic: cell line

text: Human trophoblast stem cells

characteristic: cell type

text: human

characteristic: common name

text: Homo sapiens

text: hTSC CT29

text: hTSC, CUT&RUN, TFAP2C


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: anti-TEAD4 (Stratech CSB-PA618010LA01HU)

text: NCBI

text: hTSC CT29

text: Human trophoblast stem cells

text: human

text: Homo sapiens

characteristic: organism

text: hTSC CT29

text: hTSC, CUT&RUN, TEAD4


characteristic: INSDC first public

text: public

text: anti-GATA3 (Santa Cruz sc-268)

text: NCBI

text: hTSC CT29

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT29

text: hTSC, CUT&RUN, GATA3

characteristic: title


characteristic: INSDC last update

text: public

text: Rabbit IgG (Santa Cruz sc-3888)

text: NCBI

text: mTSC EGFP

text: Mouse trophoblast stem cells

text: house mouse

text: Mus musculus

text: mTSC EGFP

text: mTSC, CUT&Tag, IgG, rep 2


text: public

characteristic: INSDC status

text: Rabbit IgG (Santa Cruz sc-3888)

text: NCBI

text: mTSC EGFP

text: Mouse trophoblast stem cells

text: house mouse

text: Mus musculus

text: mTSC EGFP

text: mTSC, CUT&Tag, IgG, rep 1


text: public

characteristic: SRA accession

text: anti-H3K4me3 (Abcam ab8580)

text: NCBI

text: mTSC EGFP

text: Mouse trophoblast stem cells

text: house mouse

text: Mus musculus

text: mTSC EGFP

text: mTSC, CUT&Tag, H3K4me3, rep 2


text: public

characteristic: Submitter Id

text: anti-H3K4me3 (Abcam ab8580)

text: NCBI

text: mTSC EGFP

text: Mouse trophoblast stem cells

text: house mouse

text: Mus musculus

text: mTSC EGFP

text: mTSC, CUT&Tag, H3K4me3, rep 1


text: public

text: anti-H3K4me1 (Abcam ab8895)

text: NCBI

characteristic: broker name

text: mTSC EGFP

text: Mouse trophoblast stem cells

text: house mouse

text: Mus musculus

text: mTSC EGFP

text: mTSC, CUT&Tag, H3K4me1, rep 2


text: public

text: anti-H3K4me1 (Abcam ab8895)

text: NCBI

text: mTSC EGFP

text: Mouse trophoblast stem cells

text: house mouse

text: Mus musculus

text: mTSC EGFP

text: mTSC, CUT&Tag, H3K4me1, rep 1


text: public

text: anti-H3K27ac (Abcam ab4729)

text: NCBI

text: mTSC EGFP

text: Mouse trophoblast stem cells

text: house mouse

text: Mus musculus

text: mTSC EGFP

text: mTSC, CUT&Tag, H3K27ac, rep 2


text: public

text: anti-H3K27ac (Abcam ab4729)

text: NCBI

text: mTSC EGFP

text: Mouse trophoblast stem cells

text: house mouse

text: Mus musculus

text: mTSC EGFP

text: mTSC, CUT&Tag, H3K27ac, rep 1


text: public

text: anti-JunD (Cell Signalling D17G2)

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, CUT&Tag, JunD


text: public

text: Rabbit IgG (Santa Cruz sc-2027)

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, CUT&Tag, IgG


text: public

text: anti-H3K4me1 (Abcam ab8895)

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, CUT&Tag, H3K4me1, rep 2


text: public

text: anti-H3K4me1 (Abcam ab8895)

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, CUT&Tag, H3K4me1, rep 1


text: public

text: anti-H3K27ac (Active Motif 39034)

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, CUT&Tag, H3K27ac, rep 2


text: public

text: anti-H3K27ac (Diagenode C15410196)

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, CUT&Tag, H3K27ac, rep 1


text: public

text: anti-cJun (Cell Signalling 60A8)

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, CUT&Tag, cJun


text: public

text: Rabbit IgG (Santa Cruz sc-2027)

text: NCBI

text: hTSC BTS5

text: Extravilous trophoblast differentiatied from hTSCs

text: human

text: Homo sapiens

text: hTSC BTS5

text: EVT, CUT&Tag, IgG

text: EVT differentiation

characteristic: treatment


text: public

text: anti-H3K27ac (Active Motif 39034)

text: NCBI

text: hTSC BTS5

text: human

text: Homo sapiens

text: hTSC BTS5

text: EVT, CUT&Tag, H3K27ac

text: EVT differentiation


text: public

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, SP600125, rep 3


text: public

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, SP600125, rep 2


text: public

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, SP600125, rep 1


text: public

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, DMSO, rep 3

text: DMSO


text: public

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, DMSO, rep 2

text: DMSO


text: public

text: NCBI

text: hTSC CT27

text: Human trophoblast stem cells

text: human

text: Homo sapiens

text: hTSC CT27

text: hTSC, DMSO, rep 1

text: DMSO


text: SARS-CoV-2: clinical or host-associated

characteristic: BioSampleModel

text: pda|garfinjm

characteristic: INSDC center alias

text: pda|garfinjm

characteristic: INSDC center name

text: public

text: NCBI

text: VALLEY MEDICAL & WELLNESS

text: USA: Minnesota

text: Homo sapiens

characteristic: host

characteristic: isolate

text: nasopharynx

text: baseline surveillance (random sampling)

text: Minnesota Department of Health, Public Health Laboratory


text: SARS-CoV-2: clinical or host-associated

characteristic: ENA-FIRST-PUBLIC

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: ALLINA HEALTH LABORATORY - ABBOTT NORTHWESTERN

text: USA: Minnesota

text: Homo sapiens

text: nasopharynx


text: SARS-CoV-2: clinical or host-associated

characteristic: ENA-LAST-UPDATE

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: HEALTHEAST - ST JOHNS HOSPITAL

text: USA: Minnesota

text: Homo sapiens

text: nasopharynx


text: SARS-CoV-2: clinical or host-associated

characteristic: External Id

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: UNIVERSITY OF MINNESOTA - BOYNTON HEALTH SERVICE

text: USA: Minnesota

text: Homo sapiens

text: nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2: clinical or host-associated

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: GRAND ITASCA CLINIC AND HOSPITAL

text: USA: Minnesota

text: Homo sapiens

text: nares

characteristic: organism

text: baseline surveillance (random sampling)


text: SARS-CoV-2: clinical or host-associated

text: pda|garfinjm

text: pda|garfinjm

characteristic: INSDC first public

text: public

text: NCBI

text: INFINITY BIOLOGIX

text: USA: Minnesota

text: Homo sapiens

text: saliva

text: baseline surveillance (random sampling)


text: Pathogen.cl

text: pda|janefaye

text: pda|janefaye

text: public

text: NCBI

text: IDEL

characteristic: description

text: USA: Utah

text: Homo sapiens

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Citrobacter freundii

text: Citrobacter freundii

characteristic: title


text: Pathogen.cl

text: pda|janefaye

text: pda|janefaye

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Citrobacter youngae

text: Citrobacter youngae


text: Pathogen.cl

text: pda|janefaye

text: pda|janefaye

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Citrobacter werkmanii

text: Citrobacter werkmanii


text: Pathogen.cl

text: pda|janefaye

text: pda|janefaye

text: public

text: NCBI

characteristic: broker name

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Citrobacter sedlakii

text: Citrobacter sedlakii


text: Pathogen.cl

characteristic: BioSampleModel

text: pda|janefaye

text: pda|janefaye

text: public

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Citrobacter braakii

text: Citrobacter braakii


text: Pathogen.cl

text: pda|janefaye

characteristic: INSDC center alias

text: pda|janefaye

text: public

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Escherichia coli

text: Escherichia coli


text: Pathogen.cl

text: pda|janefaye

text: pda|janefaye

characteristic: INSDC center name

text: public

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: blood

text: 40.7789 N 111.8795 W

text: Escherichia coli

text: Escherichia coli


text: Pathogen.cl

text: pda|janefaye

text: pda|janefaye

text: public

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

characteristic: host

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Pathogen.cl

text: pda|janefaye

text: pda|janefaye

text: public

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

characteristic: isolate

text: feces

text: 40.7789 N 111.8795 W

text: Enterobacter ludwigii

text: Enterobacter ludwigii


text: Pathogen.cl

characteristic: ENA-FIRST-PUBLIC

text: pda|janefaye

text: pda|janefaye

text: public

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Enterobacter hormaechei

text: Enterobacter hormaechei


text: Pathogen.cl

characteristic: ENA-LAST-UPDATE

text: pda|janefaye

text: pda|janefaye

text: public

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: blood

text: 40.7789 N 111.8795 W

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Pathogen.cl

characteristic: External Id

text: pda|janefaye

text: pda|janefaye

text: public

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Pathogen.cl

text: pda|janefaye

text: pda|janefaye

text: public

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: blood

text: 40.7789 N 111.8795 W

text: Klebsiella oxytoca

characteristic: organism

text: Klebsiella oxytoca


text: Pathogen.cl

text: pda|janefaye

text: pda|janefaye

characteristic: INSDC first public

text: public

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Klebsiella oxytoca

text: Klebsiella oxytoca


text: Pathogen.cl

text: pda|janefaye

text: pda|janefaye

text: public

text: NCBI

text: IDEL

characteristic: description

text: USA: Utah

text: Homo sapiens

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Klebsiella michiganensis

text: Klebsiella michiganensis


text: Pathogen.cl

text: pda|janefaye

text: pda|janefaye

text: public

text: NCBI

text: IDEL

text: USA: Utah

text: Homo sapiens

text: missing

text: feces

text: 40.7789 N 111.8795 W

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: title


text: MIGS/MIMS/MIMARKS.plant-associated

text: MIMARKS.survey

text: pda|cnakatsu

text: pda|cnakatsu

characteristic: INSDC last update

text: public

text: NCBI

text: rhizosphere

text: USA:Indiana

text: Celastrus orbiculatus

text: 41.6239425 N 87.088832 W

text: rhizosphere metagenome

text: rhizosphere metagenome


text: MIGS/MIMS/MIMARKS.plant-associated

text: MIMARKS.survey

text: pda|cnakatsu

text: pda|cnakatsu

text: public

characteristic: INSDC status

text: NCBI

text: rhizosphere

text: USA:Indiana

text: Celastrus orbiculatus

text: 41.6238506 N 87.089192 W

text: rhizosphere metagenome

text: rhizosphere metagenome


text: MIGS/MIMS/MIMARKS.plant-associated

text: MIMARKS.survey

text: pda|cnakatsu

text: pda|cnakatsu

text: public

characteristic: SRA accession

text: NCBI

text: rhizosphere

text: USA:Indiana

text: Celastrus orbiculatus

text: 41.6237348 N 87.089283 W

text: rhizosphere metagenome

text: rhizosphere metagenome


text: MIGS/MIMS/MIMARKS.plant-associated

text: MIMARKS.survey

text: pda|cnakatsu

text: pda|cnakatsu

text: public

characteristic: Submitter Id

text: NCBI

text: rhizosphere

text: USA:Indiana

text: Celastrus orbiculatus

text: 41.6239224 N 87.089433 W

text: rhizosphere metagenome

text: rhizosphere metagenome


text: MIGS/MIMS/MIMARKS.plant-associated

text: MIMARKS.survey

text: pda|cnakatsu

text: pda|cnakatsu

text: public

text: NCBI

characteristic: broker name

text: rhizosphere

text: USA:Indiana

text: Celastrus orbiculatus

text: 41.6236447 N 87.089585 W

text: rhizosphere metagenome

text: rhizosphere metagenome


text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: BioSampleModel

text: MIMARKS.survey

text: pda|cnakatsu

text: pda|cnakatsu

text: public

text: NCBI

text: rhizosphere

text: USA:Indiana

text: Celastrus orbiculatus

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text: public

text: NCBI

text: CARRIS HEALTH - WILLMAR MAIN CLINIC

text: USA: Minnesota

text: Homo sapiens

text: nasopharynx

text: baseline surveillance (random sampling)


text: SARS-CoV-2: clinical or host-associated

text: pda|garfinjm

text: pda|garfinjm

characteristic: INSDC center name

text: public

text: NCBI

text: HUTCHINSON HEALTH HOSPITAL

text: USA: Minnesota

text: Homo sapiens

text: nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2: clinical or host-associated

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: ESSENTIA HEALTH ST MARYS MEDICAL CENTER

text: USA: Minnesota

text: Homo sapiens

characteristic: host

text: nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2: clinical or host-associated

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: CENTRACARE LABORATORY SERVICES

text: USA: Minnesota

text: Homo sapiens

characteristic: isolate

text: oropharynx

text: baseline surveillance (random sampling)


text: SARS-CoV-2: clinical or host-associated

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: USA: Minnesota

text: Homo sapiens

text: nasopharynx

text: baseline surveillance (random sampling)


text: SARS-CoV-2: clinical or host-associated

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: USA: Minnesota

text: Homo sapiens

text: nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2: clinical or host-associated

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: UNIVERSITY OF MINNESOTA - INFECTIOUS DISEASE DIAGNOSTIC LABO

text: USA: Minnesota

text: Homo sapiens

text: nasopharynx


text: SARS-CoV-2: clinical or host-associated

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: USA: Minnesota

text: Homo sapiens

text: nares

text: baseline surveillance (random sampling)


text: SARS-CoV-2: clinical or host-associated

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: USA: Minnesota

text: Homo sapiens

text: nasopharynx

text: baseline surveillance (random sampling)


text: SARS-CoV-2: clinical or host-associated

text: pda|garfinjm

text: pda|garfinjm

text: public

text: NCBI

text: INFINITY BIOLOGIX

text: USA: Minnesota

text: Homo sapiens

text: saliva

text: baseline surveillance (random sampling)


Metabarcoding of juvenile spiders

text: Metagenome or environmental

text: pda|owenwangensteen

text: pda|owenwangensteen

text: public

text: Metabarcoding of juvenile spiders

text: NCBI

text: ngsfilter table avaiable from https://drive.google.com/drive/folders/12cfCtmX_gjf8i5Kwxhv6JxQpAlFjmCV3?usp=sharing

characteristic: description

text: Spain

text: pitfall traps

text: juvenile spiders

text: 40.2085 N 3.713 W

text: soil metagenome

text: standardised sampling protocol COBRA (Cardoso, 2009)

text: homogenization

text: 96 multiplexed samples of juvenile spiders


characteristic: ENA-FIRST-PUBLIC

text: public

text: NCBI

characteristic: capture-c viewpoint

text: house mouse

characteristic: common name

text: day 0 (undifferentiated)

characteristic: differentiation stage

characteristic: genotype

text: Mus musculus

text: mouse ESC (E14)

text: XY, 129/Ola

characteristic: strain


text: MIGS/MIMS/MIMARKS.human-associated

text: MIMS.me

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: pda|bioinformaticausfq

text: pda|bioinformaticausfq

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Serum_metagenome/Ecu/Borbon-Esm/15B/27-05-2019

text: NCBI

text: Detection of new pathogens which are relevant for public health in the Northern Coast of Ecuador

text: serum

text: rural communities

text: blood

text: Ecuador: Esmeraldas, Borbon

text: Homo sapiens

text: 1.08920204 N 78.98995971 W

text: metagenome

characteristic: organism

characteristic: title


HJT1366 GT 1 Amicon

text: Plant

characteristic: BioSampleModel

characteristic: INSDC center alias

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HJT1366 GT 1 Amicon

characteristic: Submitter Id

text: Tissue culture cuttings started 12Oct20 (1 tube), 12Nov20 (2 tubes), 7Jan21 (6 tubes), harvested 25Feb21

characteristic: age

text: NCBI

characteristic: broker name

characteristic: cultivar

text: USA:MI

text: Tissue culture light rack

text: Solanum candolleanum

text: seedling, above ground

characteristic: tissue

text: Solanum candolleanum, HJT1366, seedling, above ground


text: MIGS/MIMS/MIMARKS.human-associated

text: MIMS.me

characteristic: ENA-FIRST-PUBLIC

text: pda|bioinformaticausfq

text: pda|bioinformaticausfq

characteristic: INSDC center name

text: public

text: Serum_metagenome/Ecu/Borbon-Esm/17B/26-06-2019

text: NCBI

characteristic: description

text: serum

text: rural communities

text: blood

text: Ecuador: Esmeraldas, Borbon

text: Homo sapiens

characteristic: host

text: 1.08920204 N 78.98995971 W

text: metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

text: NCBI

characteristic: cell line

text: human

characteristic: common name

text: Homo sapiens

characteristic: replicate

text: ALL cell line

text: No treatment control

characteristic: treatment


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NCBI

text: human

text: Homo sapiens

characteristic: organism

text: ALL cell line

characteristic: title

text: LASP treated, 4hrs


text: public

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: REH

text: human

text: Homo sapiens

text: ALL cell line

text: No treatment control


characteristic: ENA-FIRST-PUBLIC

text: public

text: NCBI

text: REH

text: human

text: Homo sapiens

text: ALL cell line

text: LASP treated, 4hrs


text: public

text: NCBI

text: CEM

text: human

text: Homo sapiens

text: ALL cell line

text: No treatment control


text: public

text: NCBI

text: CEM

text: human

text: Homo sapiens

text: ALL cell line

text: LASP treated, 4hrs


text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: INSDC center alias

characteristic: INSDC center name

text: public

text: NCBI

text: Sequencing of the V3-V4 region of the bacterial 16S rRNA gene was performed using the barcoded primer set 515f/806r and 5 l of DNA. DNA was extracted and purified using MagAttrack Power Soil DNA KF kit.

text: 1D_S1_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

characteristic: filename

text: 1D_S1_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

characteristic: filetype

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

characteristic: platform

text: 16S rRNA sequencing of human duodenal samples: XS

text: human gut metagenome


text: Metagenome or environmental

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

text: NCBI

text: missing

text: 2D_S2_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 2D_S2_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

characteristic: host

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NCBI

text: 11D_S11_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 11D_S11_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

text: public

characteristic: SRA accession

text: NCBI

text: 12D_S12_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 12D_S12_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

characteristic: organism

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

text: public

characteristic: Submitter Id

text: NCBI

text: 14_S15_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 14_S15_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

characteristic: title

text: human gut metagenome


text: Metagenome or environmental

characteristic: ENA-FIRST-PUBLIC

text: public

text: NCBI

characteristic: broker name

text: 26_S25_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 26_S25_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: 16S rRNA sequencing of human duodenal samples: NS

text: human gut metagenome


text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: INSDC center alias

text: public

text: NCBI

text: 41_S17_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 41_S17_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC center name

text: public

text: NCBI

text: Sequencing of the V3-V4 region of the bacterial 16S rRNA gene was performed using the barcoded primer set 515f/806r and 5 l of DNA. DNA was extracted and purified using MagAttrack Power Soil DNA KF kit.

text: 49_S23_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

characteristic: filename

text: 49_S23_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: 16S rRNA sequencing of human duodenal samples: CS

text: human gut metagenome


text: Metagenome or environmental

text: public

text: NCBI

text: 55_S4_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 55_S4_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

characteristic: filetype

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

characteristic: platform

text: human gut metagenome


text: Metagenome or environmental

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: NCBI

text: 59_S21_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 59_S21_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: 16S rRNA sequencing of human duodenal samples: XS

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC first public

text: public

text: NCBI

text: 60_S6_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 60_S6_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

characteristic: host

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NCBI

text: 73D_S40_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 73D_S40_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

text: public

characteristic: SRA accession

text: NCBI

text: 77_S16_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 77_S16_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

characteristic: organism

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

text: public

characteristic: Submitter Id

text: NCBI

text: 81_S17_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 81_S17_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

characteristic: title

text: human gut metagenome


text: Metagenome or environmental

characteristic: ENA-FIRST-PUBLIC

text: public

text: NCBI

characteristic: broker name

text: Sequencing of the V3-V4 region of the bacterial 16S rRNA gene was performed using the barcoded primer set 515f/806r and 5 l of DNA. DNA was extracted and purified using MagAttrack Power Soil DNA KF kit.

text: 84_S19_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 84_S19_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: INSDC center alias

text: public

text: NCBI

text: 86_S21_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 86_S21_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC center name

text: public

text: NCBI

text: 87D_S4_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

characteristic: filename

text: 87D_S4_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

text: public

text: NCBI

text: 88_S22_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 88_S22_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

characteristic: filetype

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

characteristic: platform

text: 16S rRNA sequencing of human duodenal samples: CS

text: human gut metagenome


text: Metagenome or environmental

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: NCBI

text: 89B-2_S2_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 89B-2_S2_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: 16S rRNA sequencing of human duodenal samples: NS

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC first public

text: public

text: NCBI

text: 90_S23_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 90_S23_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

characteristic: host

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NCBI

text: 94_S27_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 94_S27_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: 16S rRNA sequencing of human duodenal samples: XS

text: human gut metagenome


text: Metagenome or environmental

text: public

characteristic: SRA accession

text: NCBI

text: Sequencing of the V3-V4 region of the bacterial 16S rRNA gene was performed using the barcoded primer set 515f/806r and 5 l of DNA. DNA was extracted and purified using MagAttrack Power Soil DNA KF kit.

text: 98_S1_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 98_S1_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

characteristic: organism

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

text: public

characteristic: Submitter Id

text: NCBI

text: 114ASBS_S1_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 114ASBS_S1_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

characteristic: title

text: human gut metagenome


text: Metagenome or environmental

characteristic: ENA-FIRST-PUBLIC

text: public

text: NCBI

characteristic: broker name

text: 116_S9_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 116_S9_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: INSDC center alias

text: public

text: NCBI

text: 117_S10_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 117_S10_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC center name

text: public

text: NCBI

text: 126D_S41_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

characteristic: filename

text: 126D_S41_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: 16S rRNA sequencing of human duodenal samples: CS

text: human gut metagenome


text: Metagenome or environmental

text: public

text: NCBI

text: 130_S19_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 130_S19_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

characteristic: filetype

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

characteristic: platform

text: human gut metagenome


text: Metagenome or environmental

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: NCBI

text: 133_S18_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 133_S18_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC first public

text: public

text: NCBI

text: 136_S21_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 136_S21_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

characteristic: host

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: 16S rRNA sequencing of human duodenal samples: NS

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NCBI

text: Sequencing of the V3-V4 region of the bacterial 16S rRNA gene was performed using the barcoded primer set 515f/806r and 5 l of DNA. DNA was extracted and purified using MagAttrack Power Soil DNA KF kit.

text: 138_S23_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 138_S23_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

text: public

characteristic: SRA accession

text: NCBI

text: 140_S25_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 140_S25_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

characteristic: organism

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

text: public

characteristic: Submitter Id

text: NCBI

text: 144D_S43_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 144D_S43_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

characteristic: title

text: human gut metagenome


text: Metagenome or environmental

characteristic: ENA-FIRST-PUBLIC

text: public

text: NCBI

characteristic: broker name

text: 161D_S7_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 161D_S7_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: INSDC center alias

text: public

text: NCBI

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text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: 16S rRNA sequencing of human duodenal samples: XS

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC center name

text: public

text: NCBI

text: 176ASBS_S6_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

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text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: 16S rRNA sequencing of human duodenal samples: CS

text: human gut metagenome


text: Metagenome or environmental

text: public

text: NCBI

text: 177_S27_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

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characteristic: filetype

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

characteristic: platform

text: human gut metagenome


text: Metagenome or environmental

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: NCBI

text: Sequencing of the V3-V4 region of the bacterial 16S rRNA gene was performed using the barcoded primer set 515f/806r and 5 l of DNA. DNA was extracted and purified using MagAttrack Power Soil DNA KF kit.

text: 178ASBS_S7_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 178ASBS_S7_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC first public

text: public

text: NCBI

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text: 182ASBS_S8_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

characteristic: host

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

characteristic: INSDC last update

text: public

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text: NCBI

text: 184ASBS_S9_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

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text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

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characteristic: SRA accession

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text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

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characteristic: organism

text: ILLUMINA

text: human gut metagenome


text: Metagenome or environmental

text: public

characteristic: Submitter Id

text: NCBI

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text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

characteristic: title

text: human gut metagenome


text: Metagenome or environmental

characteristic: ENA-FIRST-PUBLIC

text: public

text: NCBI

characteristic: broker name

text: 191D_S11_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

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text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: 16S rRNA sequencing of human duodenal samples: NS

text: human gut metagenome


text: Metagenome or environmental

characteristic: BioSampleModel

characteristic: INSDC center alias

text: public

text: NCBI

text: 192ASBS_S11_L001_R1_001 (paired) trimmed (paired, trimmed pairs).R1.fastq

text: 192ASBS_S11_L001_R2_001 (paired) trimmed (paired, trimmed pairs).R2.fastq

text: fastq

text: USA: Los Angeles

text: Homo sapiens

text: Illumina MiSeq

text: Duodenum

text: 34.0752 N 118.3802 W

text: paired

text: PCR

text: METAGENOMIC

text: AMPLICON

text: human gut metagenome

text: ILLUMINA

text: 16S rRNA sequencing of human duodenal samples: CS

text: human gut metagenome