characteristic: ENA first public

characteristic: ENA last update

text: NVRL

text: NVRL

text: public

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00356915/2022

characteristic: virus identifier


status: PUBLIC

tag: attribute

characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: NVRL

characteristic: INSDC center alias

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Interinstitutional project for the sequencing of circulating SARS-CoV-2 strains in the population of the Republic of Ireland during the 2020 pandemic of COVID19

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

unit: DD

text: Europe / Ireland / Wexford

unit: years

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-S22IRL00357192/2022

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

text: NVRL

text: NVRL

text: public

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: male

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00356979/2022

characteristic: virus identifier


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: NVRL

characteristic: INSDC center alias

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Wexford

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-S22IRL00356983/2022

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

text: Anthony Smith, NICD

text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase, Warwick Medical School, University of Warwick

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

characteristic: collected by

characteristic: collection date

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Blood culture

characteristic: isolation source

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center alias

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Enteritidis


characteristic: ENA first public

characteristic: ENA last update

text: Anthony Smith, NICD

text: Anthony Smith, NICD

text: public

characteristic: broker name

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Dublin

characteristic: title


text: Anthony Smith, NICD

text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: collected by

characteristic: collection date

characteristic: description

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Stool

characteristic: isolation source

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center alias

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


text: Anthony Smith, NICD

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Typhimurium


characteristic: ENA first public

characteristic: ENA last update

text: Anthony Smith, NICD

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

characteristic: broker name

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Isangi


text: EMG

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474039 of study SRP319028.

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: Analyze the bacteria and antibiotic resistance gene in pig fecal in China

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474039_bin.12_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Bacteroidales bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474039_bin.14_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474039_bin.15_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Bacteroidales bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474039_bin.17_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474039_bin.19_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Ignatzschineria sp.

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474039_bin.2_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474039_bin.22_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Bacteroidales bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474039_bin.24_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474039_bin.29_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Ignatzschineria sp.

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474039_bin.34_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474039_bin.35_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Treponema sp.

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474039_bin.7_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474040 of study SRP319028.

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474040_bin.10_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Prevotella sp.

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474040_bin.17_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

text: Analyze the bacteria and antibiotic resistance gene in pig fecal in China

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474040_bin.19_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Bacteroides sp.

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474040_bin.25_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474040_bin.28_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474040_bin.3_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: Ruminococcus flavefaciens

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474040_bin.34_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Pseudomonadaceae bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474040_bin.5_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474040_bin.9_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474041 of study SRP319028.

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Treponema sp.

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474041_bin.16_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Solobacterium sp.

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474041_bin.18_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Planctomycetaceae bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474041_bin.2_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Lactobacillus sp.

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474041_bin.20_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474041_bin.23_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Acetitomaculum sp.

characteristic: project name

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text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474041_bin.24_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

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text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Ruminococcus sp.

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474041_bin.5_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

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characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: Analyze the bacteria and antibiotic resistance gene in pig fecal in China

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474041_bin.6_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

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characteristic: INSDC center alias

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

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text: EMG broker account, EMBL-EBI

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text: Pig digestive system

text: Colon

text: Feces

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text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474041_bin.7_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

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text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474042 of study SRP319028.

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

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characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

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characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474042_bin.11_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

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characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

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characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474042_bin.15_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

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characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

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characteristic: metagenomic source

text: uncultured Tenericutes bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474042_bin.17_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

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characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: Aerococcus urinaeequi

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474042_bin.21_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

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characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

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text: uncultured Clostridia bacterium

characteristic: project name

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text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474042_bin.28_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

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characteristic: INSDC center alias

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

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text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

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characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: Turicibacter sanguinis

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474042_bin.3_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

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characteristic: metagenomic source

text: uncultured Treponema sp.

characteristic: project name

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text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474042_bin.32_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

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characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

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characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474042_bin.7_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474043 of study SRP319028.

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Ruminococcus sp.

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474043_bin.1_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: Escherichia coli

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474043_bin.10_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474043_bin.11_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Pseudomonadaceae bacterium

characteristic: organism

text: Analyze the bacteria and antibiotic resistance gene in pig fecal in China

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474043_bin.13_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

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characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: Methanobrevibacter smithii

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474043_bin.15_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Psychrobacillus sp.

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474043_bin.16_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Fibrobacter sp.

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474043_bin.18_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474043_bin.19_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Prevotella sp.

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474043_bin.20_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Gammaproteobacteria bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474043_bin.21_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Verrucomicrobia bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474043_bin.22_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

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text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474043_bin.25_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474043 of study SRP319028.

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

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text: uncultured Clostridia bacterium

characteristic: project name

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text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474043_bin.26_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

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text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

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text: Colon

text: Feces

text: China

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text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474043_bin.28_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

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text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

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text: uncultured Clostridia bacterium

characteristic: project name

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text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474043_bin.3_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

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characteristic: INSDC last update

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characteristic: INSDC status

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characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

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text: EMG broker account, EMBL-EBI

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characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Clostridium sp.

characteristic: organism

text: Analyze the bacteria and antibiotic resistance gene in pig fecal in China

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474043_bin.4_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

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characteristic: completeness software

characteristic: contamination score

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text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

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text: uncultured Verrucomicrobia bacterium

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characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474043_bin.8_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

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characteristic: INSDC last update

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

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characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474044 of study SRP319028.

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474044_bin.14_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

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text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

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characteristic: completeness software

characteristic: contamination score

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characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

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characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: project name

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characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474044_bin.9_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

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characteristic: External Id

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characteristic: INSDC status

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text: metaSPAdes v3.15.3

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text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474045 of study SRP319028.

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474045_bin.11_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

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text: public

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text: metaWRAP v1.3

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characteristic: completeness software

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characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

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text: uncultured bacterium

characteristic: project name

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characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474045_bin.17_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

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characteristic: INSDC status

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characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

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characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Bacteroidales bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474045_bin.21_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

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text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

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text: uncultured Bacteroidales bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474045_bin.22_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

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characteristic: INSDC last update

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

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characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Ruminococcus sp.

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474045_bin.23_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474045_bin.28_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474045_bin.32_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474046 of study SRP319028.

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474046_bin.15_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Spirochaetales bacterium

characteristic: organism

text: Analyze the bacteria and antibiotic resistance gene in pig fecal in China

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474046_bin.16_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474046_bin.19_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Bacteroidales bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474046_bin.20_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474046_bin.26_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Prevotella sp.

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474046_bin.27_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474046_bin.32_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Treponema sp.

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474046_bin.34_metaWRAP_v1.3_MAG


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EMG broker account, EMBL-EBI

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Firmicutes bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14474046_bin.36_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMG

characteristic: INSDC center alias

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

text: Pig digestive system

text: Colon

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR14474046_bin.37_metaWRAP_v1.3_MAG