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characteristic: host disease

characteristic: isolate

text: nasal swab

text: baseline surveillance (random sampling)

text: CDC Sars CoV2 Sequencing Baseline Constellation


text: SARS-CoV-2/Human/USA/ID-CDC-IBX245580898687/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Idaho

text: Homo sapiens

text: nasal swab

characteristic: isolation source

characteristic: lineage/clade name

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/ID-CDC-IBX219765573855/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Infinity Biologix

characteristic: collected by

characteristic: collection date

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Idaho

text: Homo sapiens

text: nasal swab

text: baseline surveillance (random sampling)


characteristic: External Id

text: SARS-CoV-2/Human/USA/ID-CDC-IBX104233935574/2022

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: SARS-CoV-2: clinical or host-associated

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Idaho

text: Homo sapiens

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/ID-CDC-IBX087263791820/2022

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Idaho

text: Homo sapiens

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/ID-CDC-IBX042872183436/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Idaho

characteristic: geo loc name

text: Homo sapiens

characteristic: host

characteristic: host disease

characteristic: isolate

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/GA-CDC-IBX666921423073/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Georgia

text: Homo sapiens

text: nasal swab

characteristic: isolation source

characteristic: lineage/clade name

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/GA-CDC-IBX396710302802/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Infinity Biologix

characteristic: collected by

characteristic: collection date

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Georgia

text: Homo sapiens

text: nasal swab

text: baseline surveillance (random sampling)


characteristic: External Id

text: SARS-CoV-2/Human/USA/FL-CDC-IBX516444646983/2022

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: SARS-CoV-2: clinical or host-associated

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Florida

text: Homo sapiens

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/FL-CDC-IBX479426842353/2022

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Florida

text: Homo sapiens

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CT-CDC-IBX982084963065/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Connecticut

characteristic: geo loc name

text: Homo sapiens

characteristic: host

characteristic: host disease

characteristic: isolate

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CT-CDC-IBX610554465330/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Connecticut

text: Homo sapiens

text: nasal swab

characteristic: isolation source

characteristic: lineage/clade name

characteristic: organism

text: baseline surveillance (random sampling)

characteristic: title


text: SARS-CoV-2/Human/USA/CT-CDC-IBX561151076914/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

characteristic: SRA accession

text: Infinity Biologix

characteristic: collected by

characteristic: collection date

text: Nasal Swab

characteristic: collection method

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Connecticut

text: Homo sapiens

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CA-CDC-IBX652660523376/2022

characteristic: External Id

text: CDC-OAMD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: SARS-CoV-2: clinical or host-associated

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: California

text: Homo sapiens

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/CA-CDC-IBX187965716751/2022

text: CDC-OAMD

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: SARS-CoV-2: clinical or host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: California

text: Homo sapiens

text: nasal swab

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AZ-CDC-IBX621538313859/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Arizona

characteristic: geo loc name

text: Homo sapiens

characteristic: host

characteristic: host disease

characteristic: isolate

text: nasal swab

text: Severe acute respiratory syndrome coronavirus 2

text: baseline surveillance (random sampling)


text: SARS-CoV-2/Human/USA/AZ-CDC-IBX487979314218/2022

text: CDC-OAMD

text: live

text: SARS-CoV-2: clinical or host-associated

text: Infinity Biologix

text: Nasal Swab

text: Nasal Swab

text: N gene

text: TaqPath

text: USA: Arizona

text: Homo sapiens

text: nasal swab

characteristic: isolation source

characteristic: lineage/clade name

characteristic: organism

text: baseline surveillance (random sampling)

text: CDC Sars CoV2 Sequencing Baseline Constellation

characteristic: title


characteristic: BioSampleModel

text: MIMARKS.survey

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: pda|javier.alegria@lnu.se

characteristic: INSDC center alias

text: pda|javier.alegria@lnu.se

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NCBI

characteristic: broker name

characteristic: depth

text: Sweden: Kalmar

text: 56.656944 N 16.360167 E

text: marine metagenome

text: marine metagenome


text: MIMARKS.survey

characteristic: External Id

text: pda|javier.alegria@lnu.se

text: pda|javier.alegria@lnu.se

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NCBI

text: Sweden: Oland

text: 56.9309 N 17.0607 E

text: marine metagenome

text: marine metagenome


text: public

text: NCBI

text: hepatocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Liver

characteristic: strain

text: Liver

characteristic: tissue


text: public

text: male

characteristic: Sex

characteristic: age

text: NCBI

text: mESC

text: house mouse

text: TCTCGCAA

characteristic: i5 index

text: TATGGCAC

characteristic: i7 index

text: Mus musculus

characteristic: organism

text: mouse embryonic stem cells (mESC)

text: bisulfite

characteristic: specific library preparation

text: OCT4 (CUT&RUN bisulfite) 2

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: male

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: mESC

text: house mouse

text: GATACTGG

text: AGCGAGAT

text: Mus musculus

text: mouse embryonic stem cells (mESC)

text: bisulfite

text: OCT4 (CUT&RUN bisulfite) 1


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: male

text: NCBI

text: mESC

text: house mouse

text: CTTCGTTC

text: GAATCACC

text: Mus musculus

text: mouse embryonic stem cells (mESC)

text: bisulfite

text: IgG (CUT&RUN bisulfite)


text: public

text: male

text: NCBI

text: mESC

characteristic: cell type

text: house mouse

characteristic: common name

text: TCTCTTCC

text: CGAGAGAA

text: Mus musculus

text: mouse embryonic stem cells (mESC)

text: hmC-Seal

characteristic: strain

text: OCT4 (CUT&RUN hmC-Seal) 2


text: public

text: male

characteristic: Sex

characteristic: age

text: NCBI

text: mESC

text: house mouse

text: GCAATTCG

characteristic: i5 index

text: GTAAGGTG

text: Mus musculus

text: mouse embryonic stem cells (mESC)

text: hmC-Seal

text: OCT4 (CUT&RUN hmC-Seal) 1


text: public

text: male

text: NCBI

text: mESC

text: house mouse

text: GATAGGCT

text: TGCGTAAC

characteristic: i7 index

text: Mus musculus

characteristic: organism

text: mouse embryonic stem cells (mESC)

text: OCT4 (CUT&RUN conventional) 2


characteristic: ENA-FIRST-PUBLIC

text: public

text: male

text: NCBI

text: mESC

text: house mouse

text: AGGTCACT

text: TCTAGGAG

text: Mus musculus

text: mouse embryonic stem cells (mESC)

text: OCT4 (CUT&RUN conventional) 1

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: male

text: NCBI

text: mESC

text: house mouse

text: GGAGATGA

text: CTTGCTAG

text: Mus musculus

text: mouse embryonic stem cells (mESC)

text: IgG (CUT&RUN conventional)


text: public

characteristic: Submitter Id

text: 24 weeks

text: NCBI

characteristic: broker name

text: house mouse

characteristic: genotype/variation

text: Mus musculus

text: Heart tissue

text: RNase H1-/- rep4


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 24 weeks

text: NCBI

text: house mouse

text: wild type

text: Mus musculus

text: Heart tissue

text: RNase H1+/+ rep4


text: public

characteristic: INSDC status

text: 24 weeks

text: NCBI

text: house mouse

characteristic: common name

text: Mus musculus

text: Heart tissue

text: RNase H1-/- rep3


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: wild type

text: Mus musculus

text: Heart tissue

characteristic: strain

text: RNase H1+/+ rep3


text: public

text: 24 weeks

characteristic: age

text: NCBI

text: house mouse

text: Mus musculus

text: Heart tissue

text: RNase H1-/- rep2


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: wild type

text: Mus musculus

text: Heart tissue

text: RNase H1+/+ rep2


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: Mus musculus

text: Heart tissue

text: RNase H1-/- rep1


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: wild type

text: Mus musculus

text: Heart tissue

text: RNase H1+/+ rep1


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: Mus musculus

text: Heart tissue

text: small RNase H1-/- rep4


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: wild type

text: Mus musculus

text: Heart tissue

text: small RNase H1+/+ rep4


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: Mus musculus

text: Heart tissue

text: small RNase H1-/- rep3


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: wild type

text: Mus musculus

text: Heart tissue

text: small RNase H1+/+ rep3


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: Mus musculus

text: Heart tissue

text: small RNase H1-/- rep2


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: wild type

text: Mus musculus

text: Heart tissue

text: small RNase H1+/+ rep2


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: Mus musculus

text: Heart tissue

text: small RNase H1-/- rep1


text: public

text: 24 weeks

text: NCBI

text: house mouse

text: wild type

text: Mus musculus

text: Heart tissue

text: small RNase H1+/+ rep1


text: public

text: 23-25 weeks

text: NCBI

text: house mouse

text: female

characteristic: gender

text: Mgme1 -/-

characteristic: genotype

text: Total DNA

characteristic: library prep

text: Mus musculus

text: Brain

text: brain

characteristic: tissue


characteristic: ENA-FIRST-PUBLIC

text: public

text: 23-25 weeks

text: NCBI

text: house mouse

text: female

text: Mgme1 +/+

text: Total DNA

text: Mus musculus

characteristic: organism

text: Brain

text: brain

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 23-25 weeks

text: NCBI

text: house mouse

text: male

text: Mgme1 -/-

text: Total DNA

text: Mus musculus

text: Brain

text: brain


characteristic: External Id

text: public

text: 23-25 weeks

text: NCBI

characteristic: broker name

text: house mouse

text: male

text: Mgme1 +/+

text: Total DNA

text: Mus musculus

text: Brain

text: brain


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 8 weeks

text: NCBI

text: house mouse

text: female

text: Total DNA

text: Mus musculus

text: Heart

text: heart


text: public

characteristic: INSDC status

text: 8 weeks

text: NCBI

text: house mouse

characteristic: common name

text: female

text: Rnaseh1 loxP/loxP

text: Total DNA

text: Mus musculus

text: Heart

text: heart


text: public

text: 8 weeks

characteristic: age

text: NCBI

text: house mouse

text: male

text: Mitochondrial DNA

text: Mus musculus

text: Heart

characteristic: strain

text: heart


text: public

text: 8 weeks

text: NCBI

text: house mouse

text: male

characteristic: gender

text: Rnaseh1 loxP/loxP

characteristic: genotype

text: Mitochondrial DNA

text: Mus musculus

text: Heart

text: heart


LMP/CD40 1

text: Model organism or animal

characteristic: BioSampleModel

text: pda|danielstrobl@googlemail.com

characteristic: INSDC center alias

text: pda|danielstrobl@googlemail.com

characteristic: INSDC center name

text: public

text: LMP/CD40 1

text: 8-11 weeks

text: NCBI

text: house mouse

text: Mus musculus

characteristic: replicate

text: male

characteristic: sex

text: BALB/c

text: spleen

characteristic: tissue

text: Mus musculus


LMP/CD40 2

text: Model organism or animal

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: pda|danielstrobl@googlemail.com

text: pda|danielstrobl@googlemail.com

text: public

characteristic: SRA accession

text: LMP/CD40 2

characteristic: Submitter Id

text: 8-11 weeks

text: NCBI

text: house mouse

text: Mus musculus

characteristic: organism

text: male

text: BALB/c

text: spleen

text: Mus musculus

characteristic: title


LMP/CD40 3

text: Model organism or animal

characteristic: External Id

text: pda|danielstrobl@googlemail.com

text: pda|danielstrobl@googlemail.com

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LMP/CD40 3

text: 8-11 weeks

text: NCBI

characteristic: broker name

text: house mouse

characteristic: common name

text: Mus musculus

text: male

text: BALB/c

text: spleen

text: Mus musculus


LMP/CD40 4

text: Model organism or animal

characteristic: BioSampleModel

text: pda|danielstrobl@googlemail.com

characteristic: INSDC center alias

text: pda|danielstrobl@googlemail.com

text: public

text: LMP/CD40 4

text: 8-11 weeks

characteristic: age

text: NCBI

text: house mouse

characteristic: genotype

text: Mus musculus

text: male

text: BALB/c

characteristic: strain

text: spleen

text: Mus musculus


LMP/CD40//RelBKO 1

text: Model organism or animal

characteristic: ENA-FIRST-PUBLIC

text: pda|danielstrobl@googlemail.com

text: pda|danielstrobl@googlemail.com

characteristic: INSDC center name

text: public

text: LMP/CD40//RelBKO 1

text: 8-11 weeks

text: NCBI

text: house mouse

text: Mus musculus

characteristic: replicate

text: male

characteristic: sex

text: BALB/c

text: spleen

characteristic: tissue

text: Mus musculus


LMP/CD40//RelBKO 2

text: Model organism or animal

characteristic: ENA-LAST-UPDATE

text: pda|danielstrobl@googlemail.com

text: pda|danielstrobl@googlemail.com

text: public

characteristic: SRA accession

text: LMP/CD40//RelBKO 2

characteristic: Submitter Id

text: 8-11 weeks

text: NCBI

text: house mouse

text: Mus musculus

characteristic: organism

text: male

text: BALB/c

text: spleen

text: Mus musculus

characteristic: title


LMP/CD40//RelBKO 3

text: Model organism or animal

characteristic: External Id

text: pda|danielstrobl@googlemail.com

text: pda|danielstrobl@googlemail.com

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: LMP/CD40//RelBKO 3

text: 8-11 weeks

text: NCBI

characteristic: broker name

text: house mouse

text: Mus musculus

text: male

text: BALB/c

text: spleen

text: Mus musculus


LMP/CD40//RelBKO 4

text: Model organism or animal

characteristic: BioSampleModel

text: pda|danielstrobl@googlemail.com

characteristic: INSDC center alias

text: pda|danielstrobl@googlemail.com

text: public

text: LMP/CD40//RelBKO 4

text: 8-11 weeks

characteristic: age

text: NCBI

text: house mouse

characteristic: common name

characteristic: genotype

text: Mus musculus

text: male

text: BALB/c

text: spleen

text: Mus musculus


text: AMP-CRO-CIP-GEN-NAL-SSS

characteristic: Antibiogram

text: Public Health Agency of Canada

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: CAN

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: IncFIA, IncFIB(AP001918), IncHI2, IncHI2A, IncX4

characteristic: Plasmid(s) found

characteristic: Sequence type

text: NML

text: Escherichia

characteristic: genus

text: Canada: BRITISH COLUMBIA

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: chicken

text: Not collected

text: Escherichia coli

characteristic: strain

text: Pathogen: environmental/food/other sample from Escherichia coli

type: AMR curated data - CABBAGE

value: chloramphenicol

value: broth dilution

value: mg/L

value: Sensititre

value: Escherichia coli

value: sulfisoxazole

value: ceftriaxone

value: ciprofloxacin

value: streptomycin

value: tetracycline

value: ampicillin

value: meropenem

value: nalidixic acid

value: amoxicillin-clavulanic acid

value: trimethoprim-sulfamethoxazole

value: gentamicin

value: cefoxitin

value: azithromycin


text: AMP-CIP-GEN-NAL-STR-SSS-SXT-TET

characteristic: External Id

text: Public Health Agency of Canada

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: CAN

text: Pathogen.env

text: IncFIA, IncFIB(AP001918), IncFIB(pLF82), IncI1, IncY

characteristic: SRA accession

text: NML

text: Escherichia

text: Canada: ALBERTA

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

characteristic: organism

characteristic: title

value: broth dilution

value: chloramphenicol


text: GEN-NAL-STR-SSS-TET

characteristic: Antibiogram

text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

text: Pathogen.env

text: IncFII, IncI1

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC secondary accession

text: live

text: CAN

text: Pathogen.env

characteristic: NCBI submission model

text: ColpVC, IncFIA, IncFIB(AP001918), IncFII(pSE11), IncI1, IncX2

text: NML

text: Escherichia

text: Canada: BRITISH COLUMBIA

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

value: mg/L

value: Sensititre


text: AMP-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: IncFIA, IncFIB(AP001918), IncI1, p0111

characteristic: Plasmid(s) found

text: Undetermined

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1

characteristic: Sequence type

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: AMC-AMP-CHL-FOX-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncA/C2, IncFII(pHN7A8), p0111

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli


text: CHL-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncA/C2, IncFII(pHN7A8), p0111

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncFIB(AP001918), IncFIB(pLF82)

text: NML

text: Escherichia

characteristic: genus

text: Canada: BRITISH COLUMBIA

text: other (non-clinical isolate)

characteristic: host

text: chicken

text: Not collected

text: Escherichia coli

text: Undetermined

value: sulfisoxazole

value: Escherichia coli


text: AMP-GEN

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: NML

text: Escherichia

text: Canada: ONTARIO

text: other (non-clinical isolate)

characteristic: isolate

text: chicken

text: Not collected

text: Escherichia coli

characteristic: strain

value: ciprofloxacin

value: ceftriaxone


text: GEN-STR

characteristic: External Id

text: Public Health Agency of Canada

characteristic: INSDC first public

text: live

text: Pathogen.env

text: IncFII(29), p0111

text: Undetermined

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-SXT

text: Public Health Agency of Canada

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: IncFII

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncFIA, IncFIB(AP001918), IncI1

characteristic: SRA accession

text: NML

text: Escherichia

text: Canada: ONTARIO

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

characteristic: organism

value: streptomycin

value: tetracycline


text: AMP-GEN-STR-SSS-SXT-TET

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFII, IncHI2, IncHI2A, p0111

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli

characteristic: title


text: GEN-STR-SSS

text: Public Health Agency of Canada

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: IncFII, IncI1, p0111

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN-STR-SSS

text: Public Health Agency of Canada

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: IncFIB(AP001918), IncFIB(pLF82), IncI1, p0111

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: Col156, Col8282, ColpVC

characteristic: Plasmid(s) found

characteristic: Sequence type

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncA/C2, IncFIB(AP001918), p0111

text: NML

text: Escherichia

characteristic: genus

text: Canada: ONTARIO

text: other (non-clinical isolate)

characteristic: host

text: chicken

text: Not collected

text: Escherichia coli

value: ampicillin

value: meropenem


text: AMP-GEN-NAL-STR-SSS-SXT-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncQ1, p0111

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli

characteristic: strain


text: AMP-GEN-STR-SSS-SXT-TET

characteristic: External Id

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC first public

text: live

text: Pathogen.env

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS

text: Public Health Agency of Canada

characteristic: INSDC last update

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: SASKATCHEWAN

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

characteristic: INSDC status

text: CAN

text: Pathogen.env

text: IncFIB(AP001918), IncI1, p0111

text: NML

text: Escherichia

text: Canada: SASKATCHEWAN

text: other (non-clinical isolate)

characteristic: isolate

text: chicken

text: Not collected

text: Escherichia coli

value: nalidixic acid

value: amoxicillin-clavulanic acid


text: AMP-GEN-STR-SSS-SXT-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncHI2, IncHI2A, p0111

characteristic: SRA accession

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli

characteristic: organism


text: AMP-GEN-STR-SSS-TET

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli

characteristic: title


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: CAN

text: Pathogen.env

text: IncFIA, IncFIB(AP001918), IncI1

text: NML

text: Escherichia

text: Canada: QUEBEC

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

value: gentamicin

value: trimethoprim-sulfamethoxazole


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1

characteristic: Plasmid(s) found

characteristic: Sequence type

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-TET

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncFIB(AP001918), IncI1

text: NML

text: Escherichia

characteristic: genus

text: Canada: ONTARIO

text: other (non-clinical isolate)

characteristic: host

text: chicken

text: Not collected

text: Escherichia coli

value: azithromycin

value: cefoxitin


text: GEN-NAL-STR-SSS-TET

characteristic: External Id

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli

characteristic: strain


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: CAN

text: Pathogen.env

text: IncFIB(AP001918), IncFII, IncFII(pHN7A8), IncX1

text: NML

text: Escherichia

text: Canada: BRITISH COLUMBIA

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

value: broth dilution

value: chloramphenicol


text: GEN-NAL-STR-SSS

text: Public Health Agency of Canada

text: live

characteristic: INSDC status

text: Pathogen.env

text: Col8282, IncFIB(AP001918), p0111

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1

characteristic: SRA accession

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli

characteristic: organism


text: AMP-GEN-STR-SSS-TET

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncFIB(AP001918), IncFII, IncI1, p0111

text: NML

text: Escherichia

text: Canada: ONTARIO

text: other (non-clinical isolate)

characteristic: isolate

text: chicken

text: Not collected

text: Escherichia coli

value: mg/L

value: Sensititre


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

text: Pathogen.env

text: IncFIA, IncFIB(AP001918), IncI1

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli

characteristic: title


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: IncFII(pHN7A8), IncI1

characteristic: Plasmid(s) found

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli


text: CHL-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncA/C2, IncFII(pHN7A8)

characteristic: Sequence type

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN-NAL-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncA/C2, IncFIB(AP001918), p0111

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFII(pHN7A8), IncI1

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: AMC-AMP-CHL-FOX-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncA/C2, IncFIB(AP001918), IncI2, p0111

text: NML

text: Escherichia

characteristic: genus

text: Canada: BRITISH COLUMBIA

text: other (non-clinical isolate)

characteristic: host

text: chicken

text: Not collected

text: Escherichia coli

value: Escherichia coli

value: sulfisoxazole


text: GEN

characteristic: External Id

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: Col156, IncFIB(AP001918)

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli

characteristic: strain


text: GEN-STR-SSS

text: Public Health Agency of Canada

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: IncHI2, IncHI2A

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

characteristic: INSDC status

text: Pathogen.env

text: IncFIB(AP001918), IncFII, IncHI2, IncHI2A

characteristic: SRA accession

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-TET

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncHI2, IncHI2A

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli

characteristic: organism


text: AMP-GEN-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

text: CAN

text: Pathogen.env

text: IncA/C2, IncFIB(AP001918), IncI2, p0111

text: NML

text: Escherichia

text: Canada: SASKATCHEWAN

text: other (non-clinical isolate)

characteristic: isolate

text: chicken

text: Not collected

text: Escherichia coli

text: Undetermined

value: ciprofloxacin

value: ceftriaxone


text: AMP-GEN-NAL-STR-TET

text: Public Health Agency of Canada

characteristic: INSDC secondary accession

text: live

text: CAN

text: Pathogen.env

text: IncFIC(FII), p0111

text: NML

text: Escherichia

text: Canada: BRITISH COLUMBIA

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

characteristic: title

value: streptomycin

value: tetracycline


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: IncFII(29), p0111

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: CHL-GEN-STR-SSS-SXT-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncI1, p0111

characteristic: Plasmid(s) found

characteristic: Sequence type

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: Col156, IncFIB(AP001918), p0111

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-SXT-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncX1, IncX4, p0111

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncFIB(AP001918), IncFII(pHN7A8), IncI1

text: NML

text: Escherichia

characteristic: genus

text: Canada: QUEBEC

text: other (non-clinical isolate)

characteristic: host

text: chicken

text: Not collected

text: Escherichia coli

text: Undetermined

value: meropenem

value: ampicillin


text: GEN-STR-SSS-TET

characteristic: External Id

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: ColpVC, IncX4, p0111

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli

characteristic: strain


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-SXT-TET

text: Public Health Agency of Canada

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

characteristic: INSDC status

text: Pathogen.env

text: IncFIC(FII), IncI1

characteristic: SRA accession

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncFII(29), IncI1

text: NML

text: Escherichia

text: Canada: QUEBEC

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

characteristic: organism

value: amoxicillin-clavulanic acid

value: nalidixic acid


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

text: Pathogen.env

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-NAL-STR-SSS

text: Public Health Agency of Canada

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: ColpVC, IncFIB(AP001918)

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli

characteristic: title


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: ColpVC, IncFII, p0111

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS

text: Public Health Agency of Canada

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: Col156, Col8282, ColpVC

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: ColpVC, IncFII, p0111

characteristic: Plasmid(s) found

text: NML

text: Escherichia

text: Canada: QUEBEC

text: other (non-clinical isolate)

characteristic: isolate

text: chicken

text: Not collected

text: Escherichia coli

value: gentamicin

value: trimethoprim-sulfamethoxazole


text: AMP-GEN-NAL-STR-SSS-SXT-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: ColpVC, ColpVC, IncFIB(AP001918), IncHI2, IncHI2A, IncI1

characteristic: Sequence type

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: ColpVC, IncFIB(AP001918)

text: NML

text: Canada: ALBERTA

text: chicken

text: Not collected

text: Escherichia coli


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: NML

text: Canada: ALBERTA

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), p0111

text: NML

text: Canada: ALBERTA

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: Col8282, IncFIB(AP001918)

text: NML

text: Canada: ALBERTA

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncA/C2, IncFIB(AP001918), p0111

text: NML

text: Canada: ALBERTA

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1, p0111

text: NML

text: Canada: ALBERTA

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncA/C2, IncHI2, IncHI2A

text: NML

text: Escherichia

characteristic: genus

text: Canada: ALBERTA

text: other (non-clinical isolate)

characteristic: host

text: chicken

text: Not collected

text: Escherichia coli

text: Undetermined

value: azithromycin

value: cefoxitin


text: GEN-STR-SSS

characteristic: External Id

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: NML

text: Canada: ALBERTA

text: chicken

text: Not collected

text: Escherichia coli

characteristic: strain


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1, IncY

text: NML

text: Canada: ALBERTA

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

characteristic: INSDC status

text: Pathogen.env

text: IncFIB(AP001918), IncI1

characteristic: SRA accession

text: NML

text: Canada: ALBERTA

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncFII, IncI1

text: NML

text: Canada: ALBERTA

text: chicken

text: Not collected

text: Escherichia coli

characteristic: organism


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncFIB(pLF82), IncI1

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

characteristic: NCBI submission model

text: ColpVC, p0111

text: NML

text: Escherichia

text: Canada: ONTARIO

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

characteristic: title

value: broth dilution

value: chloramphenicol


text: AMP-GEN-STR-TET

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

characteristic: NCBI submission package

text: IncFIB(pLF82), IncHI2, IncHI2A, p0111

characteristic: Plasmid(s) found

text: NML

text: Escherichia

text: Canada: BRITISH COLUMBIA

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

text: Undetermined

value: mg/L

value: Sensititre


text: AMP-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1, p0111

characteristic: Sequence type

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN-STR-SSS-SXT-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncFII, IncI1, IncQ1

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncI1, IncX4

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN-NAL-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-CHL-GEN-TET

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncY

text: NML

text: Escherichia

characteristic: genus

text: Canada: ONTARIO

text: other (non-clinical isolate)

characteristic: isolate

text: chicken

text: Not collected

text: Escherichia coli

value: Escherichia coli

value: sulfisoxazole


text: GEN-STR-SSS

characteristic: External Id

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: NML

text: Escherichia

text: Canada: ONTARIO

text: other (non-clinical isolate)

characteristic: host

text: chicken

text: Not collected

text: Escherichia coli

value: ceftriaxone

value: ciprofloxacin


text: GEN-STR-SSS

text: Public Health Agency of Canada

characteristic: INSDC first public

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli

characteristic: strain


text: AMC-AMP-FOX-GEN-NAL-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: CAN

text: Pathogen.env

text: IncFIB(AP001918), IncI1

text: NML

text: Escherichia

text: Canada: ALBERTA

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

value: streptomycin

value: tetracycline


text: GEN-STR-SSS

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: Pathogen.env

characteristic: SRA accession

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

text: CAN

text: Pathogen.env

text: NML

text: Escherichia

text: Canada: ALBERTA

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

characteristic: organism

value: meropenem

value: ampicillin


text: GEN-NAL-STR-SSS

text: Public Health Agency of Canada

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: NML

text: Canada: ALBERTA

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli

characteristic: title


text: GEN-STR-SSS

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFII(pSE11), IncHI2, IncHI2A

characteristic: Plasmid(s) found

characteristic: Sequence type

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: CHL-GEN-STR-SSS-SXT-TET

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncFIB(AP001918), IncI1

text: NML

text: Escherichia

characteristic: genus

text: Canada: QUEBEC

text: other (non-clinical isolate)

characteristic: isolate

text: chicken

text: Not collected

text: Escherichia coli

value: amoxicillin-clavulanic acid

value: nalidixic acid


text: AMP-GEN-STR-SSS

characteristic: External Id

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), p0111

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-TET

text: Public Health Agency of Canada

characteristic: INSDC first public

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncFIA, IncFIB(AP001918), IncI1, IncI2

text: NML

text: Escherichia

text: Canada: QUEBEC

text: other (non-clinical isolate)

characteristic: host

text: chicken

text: Not collected

text: Escherichia coli

characteristic: strain

value: trimethoprim-sulfamethoxazole

value: gentamicin


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: Col(BS512), IncFIB(AP001918), IncI1

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-SXT-TET

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: Col(BS512), IncFII(29), IncFII(pHN7A8), IncHI2, IncHI2A, IncI1, IncI2, IncX4

characteristic: SRA accession

text: NML

text: Escherichia

text: Canada: QUEBEC

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

value: azithromycin


text: GEN-STR-SSS

text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

text: Pathogen.env

text: IncFIA, IncFIB(AP001918), IncI1

text: NML

text: Canada: BRITISH COLUMBIA

text: chicken

text: Not collected

text: Escherichia coli

characteristic: organism


text: GEN-STR-SSS

text: Public Health Agency of Canada

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: Col(IMGS31), ColpVC, IncFIB(AP001918), IncHI2, IncHI2A

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN-STR-SSS-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: IncFIB(AP001918), IncI1

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli

characteristic: title


text: AMP-GEN

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

characteristic: Plasmid(s) found

characteristic: Sequence type

text: NML

text: Escherichia

text: Canada: BRITISH COLUMBIA

text: other (non-clinical isolate)

text: chicken

text: Not collected

text: Escherichia coli

value: cefoxitin

value: broth dilution


text: GEN-STR-SSS

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: Col156, Col156, Col156, Col8282, IncFIB(AP001918), IncI, p0111

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: Col8282, IncFIB(AP001918), p0111

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: Col8282, ColpVC, p0111

text: NML

text: Canada: ONTARIO

text: chicken

text: Not collected

text: Escherichia coli


text: AMC-AMP-FOX-CRO-GEN-STR-SSS-TET

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: IncFIB(AP001918), IncFII, IncHI2, IncHI2A, IncX1, p0111

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: GEN-STR-SSS

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.env

text: IncFIA, IncFIB(AP001918), IncHI2, IncHI2A

text: NML

text: Escherichia

characteristic: genus

text: Canada: BRITISH COLUMBIA

text: other (non-clinical isolate)

characteristic: isolate

text: chicken

text: Not collected

text: Escherichia coli

value: mg/L

value: chloramphenicol


text: AMC-AMP-CHL-FOX-CRO-GEN-STR-SSS-TET

characteristic: External Id

text: Public Health Agency of Canada

characteristic: INSDC first public

text: live

text: Pathogen.env

text: IncA/C2, IncFIB(AP001918), IncI2, IncX4

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: AMP-GEN

text: Public Health Agency of Canada

text: live

text: Pathogen.env

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli

characteristic: strain


text: GEN-STR-SSS-TET

text: Public Health Agency of Canada

characteristic: INSDC last update

text: live

text: CAN

text: Pathogen.env

text: IncFIB(AP001918), IncFII, p0111

text: NML

text: Escherichia

text: Canada: QUEBEC

text: other (non-clinical isolate)

characteristic: host

text: chicken

text: Not collected

text: Escherichia coli

value: Sensititre

value: Escherichia coli


text: GEN-STR-SSS

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

characteristic: INSDC status

text: Pathogen.env

text: Col156, Col156, ColpVC

text: NML

text: Canada: QUEBEC

text: chicken

text: Not collected

text: Escherichia coli


text: CIP-DOX-GEN-MXF-SXT

text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: Col156, IncB/O/K/Z, IncFIA, IncFII(pRSB107), IncX4

characteristic: SRA accession

text: NML

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

text: Pathogen: clinical or host-associated sample from Escherichia coli


text: GEN

text: Public Health Agency of Canada

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: Col(BS512), IncB/O/K/Z

text: NML

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: organism


text: CIP-DOX-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Col(BS512), Col156, IncFII(29), IncI1

text: NML

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-DOX-GEN-MXF-TOB-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col156, IncFIA

characteristic: Plasmid(s) found

text: NML

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: title


text: DOX-GEN-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col8282, IncFIB(AP001918), IncHI2, IncHI2A, p0111

text: Undetermined

characteristic: Sequence type

text: NML

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: AMC-CFZ-DOX-GEN-TZP-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: NML

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: DOX-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col156, IncFIA, IncFIB(AP001918), IncI1, p0111

text: NML

text: Canada: ALBERTA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: GEN-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: NML

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: GEN-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: NML

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: NML

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CFZ-GEN-MXF-TGC

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: NML

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-DOX-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col(BS512), Col156, IncFIA, IncFII(pRSB107), IncI, IncX4

text: NML

text: Canada: SASKATCHEWAN

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: AMC-CFZ-GEN-MXF-TZP-TOB-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col156, IncFII(29)

text: NML

text: Canada: ALBERTA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: GEN-SXT

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.cl

text: Col156, IncFII(29)

text: NML

text: Escherichia

characteristic: genus

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

characteristic: isolate

text: human

text: Not collected

text: Escherichia coli

text: Undetermined

value: ceftazidime

value: doxycycline

value: moxifloxacin

value: tigecycline

value: fosfomycin

value: tobramycin

value: piperacillin-tazobactam

value: cefazolin

value: colistin

value: ertapenem

value: ceftazidime-avibactam


text: CIP-GEN-MXF

characteristic: External Id

text: Public Health Agency of Canada

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: IncFIA, IncFII(pRSB107), IncI1, IncX4

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF

text: Public Health Agency of Canada

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: IncFIA, IncFII(pRSB107)

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: strain


text: CIP-DOX-GEN-MXF-SXT

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col156, IncFIA, IncFII(pRSB107)

text: NML

text: Canada: ONTARIO

text: Homo sapiens

characteristic: host

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CAZ-CIP-DOX-FOF-GEN-MXF-TGC-SXT

text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Col8282, ColpVC, IncFII, IncN, IncX1, p0111

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: GEN-MXF-SXT

text: Public Health Agency of Canada

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: NML

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: Col156, IncFIA, IncFII(pRSB107)

text: NML

text: Canada: NOVA SCOTIA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: organism


text: GEN-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: Plasmid(s) found

text: NML

text: Canada: NOVA SCOTIA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: DOX-GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col156, IncFII

characteristic: Sequence type

text: NML

text: Canada: NOVA SCOTIA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: title


text: CFZ-CIP-GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: IncFIA, IncFII(pRSB107), IncX1

text: NML

text: Canada: NEW BRUNSWICK

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: GEN-MXF

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.cl

text: NML

text: Escherichia

characteristic: genus

text: Canada: SASKATCHEWAN

text: Homo sapiens

text: E. coli gastroenteritis

characteristic: isolate

text: human

text: Not collected

text: Escherichia coli

value: cefepime

value: aztreonam

value: amikacin

value: ceftriaxone

value: trimethoprim-sulfamethoxazole

value: cefoxitin


text: CIP-GEN-MXF

characteristic: External Id

text: Public Health Agency of Canada

characteristic: INSDC first public

text: live

text: CAN

text: Pathogen.cl

text: IncFIA, IncFII(pRSB107)

text: NML

text: Escherichia

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

text: Undetermined

value: ceftazidime

value: broth dilution

value: mg/L

value: Sensititre

value: Escherichia coli

value: ceftolozane-tazobactam

value: imipenem

value: meropenem

value: amoxicillin-clavulanic acid


text: CFZ-GEN-MXF-SXT

text: Public Health Agency of Canada

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: Col156, IncFII(29)

text: NML

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: strain


text: CIP-GEN-MXF

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: IncFIA, IncFII(pRSB107)

text: NML

text: Canada: ALBERTA

text: Homo sapiens

characteristic: host

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: GEN-MXF-SXT

text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Col156, IncFII(29)

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: GEN-MXF-SXT

text: Public Health Agency of Canada

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: Col156, IncB/O/K/Z

characteristic: SRA accession

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: Col156, IncFIA, IncI1

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: organism


text: CIP-GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: Col(BS512), Col156, IncFIA

characteristic: Plasmid(s) found

text: NML

text: Canada: BRITISH COLUMBIA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CFZ-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.cl

text: Col156, IncFII(29)

characteristic: Sequence type

text: NML

text: Escherichia

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

text: Undetermined

characteristic: title

value: gentamicin

value: tigecycline

value: piperacillin-tazobactam

value: tobramycin

value: moxifloxacin

value: fosfomycin


text: GEN-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col156, IncFII(29)

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CFZ-CIP-DOX-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col(BS512), IncFIA, IncFIB(AP001918), IncFII(pRSB107), p0111

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: DOX-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: NML

text: Canada: NOVA SCOTIA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col156, IncFIA, IncI1

text: NML

text: Canada: SASKATCHEWAN

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF-TOB-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col156, IncFIA, IncFIB(AP001918)

text: NML

text: Canada: BRITISH COLUMBIA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-DOX-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: NML

text: Canada: NEW BRUNSWICK

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CFZ-CIP-GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: IncFIA, IncFII, IncFII(pRSB107)

text: NML

text: Canada: NEW BRUNSWICK

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: GEN-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col156, IncFIA, IncFIB(AP001918)

text: NML

text: Canada: ALBERTA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col(BS512), IncFII(29), RepA

text: NML

text: Canada: ALBERTA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: AMC-CFZ-FOX-CIP-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.cl

text: ColpVC, IncFIA, IncFIB(AP001918), IncQ1, p0111

text: NML

text: Escherichia

characteristic: genus

text: Canada: ALBERTA

text: Homo sapiens

text: E. coli gastroenteritis

characteristic: isolate

text: human

text: Not collected

text: Escherichia coli

value: nitrofurantoin

value: amikacin

value: doxycycline

value: trimethoprim-sulfamethoxazole

value: ceftazidime-avibactam

value: ceftriaxone


text: CFZ-CIP-DOX-GEN-MXF-SXT

characteristic: External Id

text: Public Health Agency of Canada

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: Col(BS512), IncB/O/K/Z, IncFIA, IncFII(pRSB107)

text: NML

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CFZ-DOX-GEN-SXT

text: Public Health Agency of Canada

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: NML

text: Canada: BRITISH COLUMBIA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: strain


text: GEN-SXT

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col156, IncFII(29)

text: NML

text: Canada: QUEBEC

text: Homo sapiens

characteristic: host

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-DOX-GEN-MXF-SXT

text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Col156, IncFIA, IncFII(pRSB107)

text: NML

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-DOX-GEN-MXF

text: Public Health Agency of Canada

characteristic: INSDC secondary accession

text: live

text: CAN

text: Pathogen.cl

text: Col(BS512), IncFIA, IncFIB(AP001918), IncN

characteristic: SRA accession

text: NML

text: Escherichia

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

value: cefazolin

value: broth dilution

value: mg/L

value: Sensititre

value: Escherichia coli

value: ciprofloxacin

value: colistin

value: cefoxitin


text: CST-GEN

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.cl

characteristic: NCBI submission model

text: Col156, IncFIB(AP001918), IncFII

text: NML

text: Escherichia

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: organism

value: tigecycline

value: aztreonam

value: tobramycin

value: ceftazidime

value: imipenem

value: meropenem

value: ceftolozane-tazobactam

value: cefepime


text: CIP-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: Col(BS512), Col156, IncFIA, IncFII(pRSB107)

characteristic: Plasmid(s) found

text: NML

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: IncFIB(AP001918), IncX1, IncX4, IncY

characteristic: Sequence type

text: NML

text: Canada: NOVA SCOTIA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: title


text: GEN

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: NML

text: Canada: ALBERTA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col(BS512), IncFIA, IncFII(pRSB107)

text: NML

text: Canada: ALBERTA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CFZ-GEN-MXF-TOB-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col156, IncFII(29)

text: NML

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: DOX-GEN-MXF-TGC-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: NML

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: IncFII(29), IncI1

text: NML

text: Canada: QUEBEC

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col(BS512), Col156, IncFIA

text: NML

text: Canada: SASKATCHEWAN

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: IncFIA, IncFII(pRSB107)

text: NML

text: Canada: NEW BRUNSWICK

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CFZ-FOX-CIP-GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: IncFIA, IncFII(pRSB107)

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CFZ-CIP-GEN-MXF

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: IncFIA

text: NML

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF

text: Public Health Agency of Canada

text: live

text: CAN

text: Pathogen.cl

text: IncFIA

text: NML

text: Escherichia

characteristic: genus

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

characteristic: isolate

text: human

text: Not collected

text: Escherichia coli

value: ertapenem

value: ceftazidime-avibactam

value: piperacillin-tazobactam

value: amoxicillin-clavulanic acid

value: moxifloxacin

value: trimethoprim-sulfamethoxazole

value: amikacin

value: doxycycline

value: gentamicin


text: CIP-GEN-MXF

characteristic: External Id

text: Public Health Agency of Canada

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: IncFIA, IncFII(pRSB107), IncI1

text: NML

text: Canada: MANITOBA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF

text: Public Health Agency of Canada

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: IncFIA, IncFII(pRSB107)

text: NML

text: Canada: BRITISH COLUMBIA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: strain


text: CIP-GEN-MXF-SXT

characteristic: Antibiogram

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col(BS512), Col156, ColpVC, IncFIA

text: NML

text: Canada: BRITISH COLUMBIA

text: Homo sapiens

characteristic: host

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-GEN-MXF-SXT

text: Public Health Agency of Canada

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Col156, IncFIA, IncFII(pRSB107)

text: NML

text: Canada: BRITISH COLUMBIA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CFZ-CIP-GEN-MXF

text: Public Health Agency of Canada

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: Col(BS512), IncFII(29)

characteristic: SRA accession

text: NML

text: Canada: BRITISH COLUMBIA

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: DOX-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: Col156, IncFII(29)

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: organism


text: AMC-CFZ-CIP-GEN-MXF-TZP

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: IncFIA, IncFII(pRSB107), IncY

characteristic: Plasmid(s) found

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli


text: CIP-DOX-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: Col(BS512), Col156, IncB/O/K/Z, IncFIA, IncI1

characteristic: Sequence type

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli

characteristic: title


text: CIP-GEN-MXF-SXT

text: Public Health Agency of Canada

text: live

text: Pathogen.cl

text: NML

text: Canada: ONTARIO

text: Homo sapiens

text: E. coli gastroenteritis

text: human

text: Not collected

text: Escherichia coli