text: Pathogen.cl

text: pda|peerah

text: pda|peerah

text: public

text: NCBI

text: USA: California / Los Angeles County

text: Homo sapiens

text: Monkeypox infection

text: Monkeypox virus/Human/USA/CA-LACPHL-MA00177/2022

text: clinical

text: Monkeypox virus

text: Monkeypox virus


status: PUBLIC

text: Pathogen.cl

tag: attribute

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: pda|peerah

characteristic: INSDC center alias

text: pda|peerah

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: Los Angeles County Public Health Laboratories

text: USA: California / Los Angeles County

text: Homo sapiens

characteristic: host

text: Monkeypox infection

text: Monkeypox virus/Human/USA/CA-LACPHL-MA00178/2022

characteristic: isolate

text: clinical

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

characteristic: title


text: Pathogen.cl

text: pda|peerah

text: pda|peerah

text: public

text: NCBI

text: USA: California / Los Angeles County

text: Homo sapiens

text: Monkeypox infection

text: Monkeypox virus/Human/USA/CA-LACPHL-MA00179/2022

text: clinical

text: Monkeypox virus

text: Monkeypox virus


text: Pathogen.cl

text: pda|peerah

text: pda|peerah

text: public

text: NCBI

text: USA: California / Los Angeles County

text: Homo sapiens

text: Monkeypox infection

text: Monkeypox virus/Human/USA/CA-LACPHL-MA00180/2022

text: clinical

text: Monkeypox virus

text: Monkeypox virus


text: Pathogen.env

text: Salmonella

characteristic: Genus

text: environmental-factory/production facility| environmental-water

characteristic: IFSAC+ Category

text: CFSAN

text: CFSAN

text: public

characteristic: ProjectAccession

characteristic: PublicAccession

text: enterica

characteristic: Species

text: environmental/food/other

text: NCBI

text: UNAB

text: Chile

text: irrigation canal

text: irrigation canal:ENVO_00000036

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: source type

characteristic: strain


text: Pathogen.env

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Salmonella

text: environmental-water| environmental-factory/production facility

text: CFSAN

characteristic: INSDC center alias

text: CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: enterica

text: environmental/food/other

text: NCBI

text: UNAB

text: Chile

text: Irrigation canal

text: irrigation canal:ENVO_00000036

text: Salmonella enterica

text: GenomeTrakr

text: environmental


text: Pathogen.env

text: Salmonella

text: environmental-water

text: CFSAN

text: CFSAN

text: public

characteristic: INSDC status

characteristic: SRA accession

text: enterica

characteristic: Submitter Id

text: environmental/food/other

text: NCBI

characteristic: broker name

text: UNAB

text: Chile

text: river

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: environmental

characteristic: title


text: Pathogen.env

text: Salmonella

characteristic: Genus

characteristic: IFSAC+ Category

text: CFSAN

text: CFSAN

text: public

characteristic: ProjectAccession

characteristic: PublicAccession

text: enterica

characteristic: Species

text: environmental/food/other

text: NCBI

text: UNAB

text: Chile

text: irrigation canal

text: irrigation canal:ENVO_00000036

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

text: environmental


text: Pathogen.env

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Salmonella

text: environmental-water

text: CFSAN

text: CFSAN

text: public

text: enterica

text: environmental/food/other

text: NCBI

text: UNAB

text: Chile

text: estuary

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: source type

characteristic: strain


text: SARS-CoV-2: clinical or host-associated

characteristic: INSDC center alias

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: California

text: Homo sapiens

characteristic: host

text: COVID-19 [MONDO:0100096]

characteristic: isolate

text: clinical

text: Severe acute respiratory syndrome coronavirus 2

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Washington

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

characteristic: organism

text: Diagnostic Testing [GENEPIO:0100002]

characteristic: title


text: SARS-CoV-2: clinical or host-associated

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Indiana

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Virginia

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: West Virginia

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Georgia

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: North Carolina

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Colorado

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: South Carolina

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Minnesota

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Florida

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: New Jersey

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Illinois

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Wisconsin

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: New Mexico

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Washington

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: environmental

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: California

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Washington

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Oregon

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Texas

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Pennsylvania

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Indiana

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Georgia

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Virginia

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Nebraska

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: SARS-CoV-2: clinical or host-associated

text: public

text: NCBI

text: IEH

text: Swab [GENEPIO:0100027]

text: Swabbing [GENEPIO:0002117]

text: USA: Minnesota

text: Homo sapiens

text: COVID-19 [MONDO:0100096]

text: clinical

text: Diagnostic Testing [GENEPIO:0100002]


text: Pathogen.env

text: Salmonella

characteristic: Genus

characteristic: IFSAC+ Category

text: CFSAN

text: CFSAN

text: public

characteristic: ProjectAccession

characteristic: PublicAccession

text: enterica

characteristic: Species

text: environmental/food/other

text: NCBI

text: UNAB

text: Chile

text: irrigation canal

text: irrigation canal:ENVO_00000036

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: source type

characteristic: strain


text: Pathogen.env

text: Salmonella

text: CFSAN

characteristic: INSDC center alias

text: CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: enterica

text: environmental/food/other

text: NCBI

text: UNAB

text: Chile

text: irrigation canal

text: irrigation canal:ENVO_00000036

text: Salmonella enterica

text: GenomeTrakr

text: environmental


text: Pathogen.env

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

text: Salmonella

text: environmental-water

text: CFSAN

text: CFSAN

text: public

text: enterica

characteristic: Submitter Id

text: environmental/food/other

text: NCBI

characteristic: broker name

text: UNAB

text: Chile

text: river

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: environmental

characteristic: title


text: Pathogen.env

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Salmonella

characteristic: Genus

text: environmental-water

characteristic: IFSAC+ Category

text: CFSAN

text: CFSAN

text: public

characteristic: ProjectAccession

characteristic: PublicAccession

text: enterica

text: environmental/food/other

text: NCBI

text: UNAB

text: Chile

text: river water

text: river water:ENVO_01000599

text: Salmonella enterica

text: GenomeTrakr

text: environmental


text: MIMS.me

text: pda|lnanderscience

characteristic: INSDC center alias

text: pda|lnanderscience

characteristic: INSDC center name

text: public

text: NCBI

text: 0-20 cm

characteristic: depth

text: DNA was extracted from the soil samples using the Qiagen PowerSoil® DNA Isolation Kit, and the analysis was carried out with 16S primers targeting the V4 hypervariable region of the 16S small-subunit (SSU) and ITS1f and ITS2 primers targeting the ITS1 region. Amplicons were sequenced on an Illumina MiSeq using the 500 cycle MiSeq Reagent Kit v2 according to the standard manufacturer instructions.

characteristic: description

text: 300 m

characteristic: elev

text: ENVO:01000177 (grassland biome)

text: ENVO:00005750 (grassland soil)

text: ENVO:00001998 (soil)

text: USA: Washington, Prosser, Irrigated Agricultural Research and Extension Center (IAREC)

text: 46.25 N 119.73 W

text: soil metagenome

text: soil metagenome


text: Pathogen.env

characteristic: BioSampleModel

text: Salmonella

text: environmental-factory/production facility | environmental-water

text: CFSAN

text: CFSAN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: enterica

characteristic: Species

text: environmental/food/other

text: NCBI

text: UNAB

text: Chile

text: irrigation canal

text: irrigation canal:ENVO_00000036

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: source type

characteristic: strain


text: Pathogen.env

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Salmonella

characteristic: Genus

characteristic: IFSAC+ Category

text: CFSAN

text: CFSAN

text: public

text: enterica

characteristic: Submitter Id

text: environmental/food/other

text: NCBI

characteristic: broker name

text: UNAB

text: Chile

text: Irrigation canal

text: irrigation canal:ENVO_00000036

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: environmental

characteristic: title