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text: Mus musculus

characteristic: replicate

text: NIH3T3 cells

text: Osmotic stress (KCl, 7h)

characteristic: stress type


characteristic: External Id

text: Faculty of Medicine, Technion

characteristic: INSDC center name

text: live

text: Generic

text: Mouse embryonic fibroblasts NIH3T3

text: Ribosome protected mRNA footprint

text: Mus musculus

text: NIH3T3 cells

text: Osmotic stress (KCl, 2h)


text: Faculty of Medicine, Technion

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Mouse embryonic fibroblasts NIH3T3

text: Ribosome protected mRNA footprint

text: Mus musculus

text: NIH3T3 cells

text: Control for H2O2 and KCl


text: Faculty of Medicine, Technion

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Mouse embryonic fibroblasts NIH3T3

text: Ribosome protected mRNA footprint

text: Mus musculus

text: NIH3T3 cells

text: Oxidative stress (H2O2, 7h)


text: Faculty of Medicine, Technion

text: live

text: Generic

text: Mouse embryonic fibroblasts NIH3T3

text: Ribosome protected mRNA footprint

text: Mus musculus

text: NIH3T3 cells

text: Oxidative stress (H2O2, 2h)


text: Faculty of Medicine, Technion

text: live

text: Generic

text: Mouse embryonic fibroblasts NIH3T3

text: PolyA-selected mRNA

text: Mus musculus

text: NIH3T3 cells

text: Osmotic stress (KCl, 7h)


text: Faculty of Medicine, Technion

text: live

text: Generic

text: Mouse embryonic fibroblasts NIH3T3

text: PolyA-selected mRNA

text: Mus musculus

text: NIH3T3 cells

text: Osmotic stress (KCl, 2h)


text: Faculty of Medicine, Technion

text: live

text: Generic

text: Mouse embryonic fibroblasts NIH3T3

text: PolyA-selected mRNA

text: Mus musculus

text: NIH3T3 cells

text: Control for heat stress


text: Faculty of Medicine, Technion

text: live

text: Generic

text: Mouse embryonic fibroblasts NIH3T3

text: PolyA-selected mRNA

text: Mus musculus

text: NIH3T3 cells

text: Heat stress (42°C, 8h)


text: Faculty of Medicine, Technion

text: live

text: Generic

text: Mouse embryonic fibroblasts NIH3T3

text: PolyA-selected mRNA

text: Mus musculus

text: NIH3T3 cells

text: Heat stress (44°C, 2h)


text: Faculty of Medicine, Technion

text: live

text: Generic

text: Mouse embryonic fibroblasts NIH3T3

text: PolyA-selected mRNA

text: Mus musculus

text: NIH3T3 cells

text: Control for H2O2 and KCl


text: Faculty of Medicine, Technion

text: live

text: Generic

text: Mouse embryonic fibroblasts NIH3T3

text: PolyA-selected mRNA

text: Mus musculus

text: NIH3T3 cells

text: Oxidative stress (H2O2, 7h)


text: Faculty of Medicine, Technion

text: live

text: Generic

text: Mouse embryonic fibroblasts NIH3T3

text: PolyA-selected mRNA

text: Mus musculus

text: NIH3T3 cells

text: Oxidative stress (H2O2, 2h)


text: Institute for Life and Medical Sciences, Kyoto University

text: live

text: Generic

text: 9 weeks

characteristic: age

text: Pax8rtTA; tetO-Cre; Gpx4 f/f

characteristic: genotype

text: Mus musculus

text: Dissociated total kidney cells

characteristic: strain

text: Kidney

characteristic: tissue

text: Gpx4 cKO female


characteristic: INSDC secondary accession

text: live

text: Generic

text: 9 weeks

text: Pax8rtTA; tetO-Cre; Gpx4 f/f

text: Mus musculus

characteristic: organism

text: Dissociated total kidney cells

text: Kidney

text: Gpx4 cKO male

characteristic: title


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 9 weeks

text: Gpx4 f/f

text: Mus musculus

text: Dissociated total kidney cells

text: Kidney

text: Control female


text: live

text: Generic

text: 9 weeks

text: Gpx4 f/f

text: Mus musculus

text: Dissociated total kidney cells

text: Kidney

text: Control male


text: Blizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London

text: live

text: Generic

characteristic: full name

text: Mus musculus

text: mESC

text: TI

characteristic: transduction


characteristic: External Id

text: live

text: Generic

text: HA Ab (Biolegend, 901501)

characteristic: antibodies

text: Mus musculus

text: mESC


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: mESC WT IgG Control for H3K9me3 Rep 2


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: mESC WT IgG Control for H3K9me3 Rep 1


text: live

text: Generic

characteristic: SRA accession

text: anti-H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: mESC

text: mESC WT H3K9me3 Rep 2


text: live

text: Generic

text: anti-H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: mESC

text: mESC WT H3K9me3 Rep 1


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: GFPBright cell were sorted as detailed in Fernandes et al., 2022

characteristic: time-point

text: shTRIM28 IgG Control for H3K9me3 Rep 2


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

characteristic: strain

text: shTRIM28 IgG Control for H3K9me3 Rep 1


text: live

text: Generic

text: anti-H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: mESC

text: shTRIM28 H3K9me3 Rep 2


text: live

text: Generic

text: anti-H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: mESC

text: shTRIM28 H3K9me3 Rep 1


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: shZfp819 62 IgG Control for H3K9me3 Rep 2


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: shZfp819 62 IgG Control for H3K9me3 Rep 1


text: live

text: Generic

text: anti-H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: mESC

text: shZfp819 62 H3K9me3 Rep 2


text: live

text: Generic

text: anti-H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: mESC

text: shZfp819 62 H3K9me3 Rep 1


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: shZfp819 59 IgG Control for H3K9me3 Rep 2


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: shZfp819 59 IgG Control for H3K9me3 Rep 1


text: live

text: Generic

text: anti-H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: mESC

text: shZfp819 59 H3K9me3 Rep 2


text: live

text: Generic

text: anti-H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: mESC

text: shZfp819 59 H3K9me3 Rep 1


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: shEmpty IgG Control for H3K9me3 Rep 2

text: shEmpty


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: shEmpty IgG Control for H3K9me3 Rep 1

text: shEmpty


text: live

text: Generic

text: anti-H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: mESC

text: shEmpty H3K9me3 Rep 2

text: shEmpty


text: live

text: Generic

text: anti-H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: mESC

text: shEmpty H3K9me3 Rep 1

text: shEmpty


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: Samples collected 5 days post puromycin selection

text: shTRIM28 IgG Control for H3K27ac Rep 2


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: shTRIM28 IgG Control for H3K27ac Rep 1


text: live

text: Generic

text: anti-H3K27ac (Abcam, ab4729)

text: Mus musculus

text: mESC

text: shTRIM28 H3K27ac Rep 2


text: live

text: Generic

text: anti-H3K27ac (Abcam, ab4729)

text: Mus musculus

text: mESC

text: shTRIM28 H3K27ac Rep 1


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: shZfp819 62 IgG Control for H3K27ac Rep 2


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: shZfp819 62 IgG Control for H3K27ac Rep 1


text: live

text: Generic

text: anti-H3K27ac (Abcam, ab4729)

text: Mus musculus

text: mESC

text: shZfp819 62 H3K27ac Rep 2


text: live

text: Generic

text: anti-H3K27ac (Abcam, ab4729)

text: Mus musculus

text: mESC

text: shZfp819 62 H3K27ac Rep 1


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: shEmpty IgG Control for H3K27ac Rep 2

text: shEmpty


text: live

text: Generic

text: IgG control Ab (Millipore, 12-370)

text: Mus musculus

text: mESC

text: shEmpty IgG Control for H3K27ac Rep 1

text: shEmpty


text: live

text: Generic

text: anti-H3K27ac (Abcam, ab4729)

text: Mus musculus

text: mESC

text: shEmpty H3K27ac Rep 2

text: shEmpty


text: live

text: Generic

text: anti-H3K27ac (Abcam, ab4729)

text: Mus musculus

text: mESC

text: shEmpty H3K27ac Rep 1

text: shEmpty


text: live

text: Generic

text: Mus musculus

text: mESC

text: Experiment3 shEmpty

text: shEmpty


text: live

text: Generic

text: Mus musculus

text: mESC

text: Experiment3 shZFP819


text: live

text: Generic

text: Mus musculus

text: mESC

text: Experiment2 shEmpty

text: shEmpty


text: live

text: Generic

text: Mus musculus

text: mESC

text: Experiment2 shZFP819


text: live

text: Generic

text: Mus musculus

text: mESC

text: Experiment1 shEmpty

text: shEmpty


text: live

text: Generic

text: Mus musculus

text: mESC

text: Experiment1 shZFP819


text: Berlin Institute for Medical Systems Biology (BIMSB), Max Delbrück Center for Molecular Medicine

text: live

text: Generic

text: Flp-In-293 Cell Line

characteristic: cell type

text: Homo sapiens

text: HEK293 cells

text: 120 minutes 4sU + IAA

characteristic: treatment


characteristic: INSDC secondary accession

text: live

text: Generic

text: Flp-In-293 Cell Line

text: Homo sapiens

characteristic: organism

text: HEK293 cells

text: 60 minutes 4sU + IAA


text: live

text: Generic

characteristic: NCBI submission model

text: Flp-In-293 Cell Line

text: Homo sapiens

text: HEK293 cells

characteristic: title

text: 30 minutes 4sU + IAA


text: live

text: Generic

characteristic: NCBI submission package

text: Flp-In-293 Cell Line

text: Homo sapiens

text: HEK293 cells

text: (no 4sU) + IAA


text: live

text: Generic

text: Flp-In-293 Cell Line

text: Homo sapiens

text: HEK293 cells

text: 24 hours 4sU + IAA


text: live

text: Generic

text: Flp-In-293 Cell Line

text: Homo sapiens

text: HEK293 cells

text: 15 minutes 4sU + IAA


text: DATA, NBT, NSTDA

text: live

text: Generic

text: Intraerythrocytic parasites

characteristic: Stage

text: Plasmodium falciparum 3D7

text: Intraerythrocytic parasites

text: Mixed intraerythrocytic stage total RNA


characteristic: External Id

text: Arizona State University

text: live

text: Plant

text: Benjamin Wilder

text: Greer Dolby

text: Genomic type specimen for Encelia farinosa, funded by NSF award #1925535

characteristic: description

text: adult

text: Arizona

characteristic: ecotype

text: USA: Tucson, Arizona at Tumamoc Hill, Desert Laboratory

characteristic: isolate

text: 32.214161 N 111.005587 W

text: Encelia farinosa

text: tissue

text: leaf

characteristic: tissue

text: Encelia farinosa assembly from Tumamoc Hill


WT HCT116 C1 Fusion

text: Cardiff University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Human

text: Mid-crisis

characteristic: age

text: Prof. Eric Hendrickson, College of Biological Sciences, University of Minnesota, USA

text: carcinoma

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: WT HCT116 C1 Fusion

characteristic: property

text: male

characteristic: sex

text: colon

text: HCT116 WT Clone 1 crisis fusion


WT HCT116 C3 Fusion

text: Cardiff University

characteristic: INSDC secondary accession

text: live

text: Human

characteristic: SRA accession

text: Mid-crisis

text: carcinoma

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

characteristic: organism

text: WT HCT116 C3 Fusion

text: male

text: colon

text: HCT116 WT Clone 3 crisis fusion


WT HCT116 C11 Fusion

text: Cardiff University

text: live

text: Human

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mid-crisis

text: carcinoma

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: WT HCT116 C11 Fusion

text: male

text: colon

text: HCT116 WT Clone 11 crisis fusion

characteristic: title


WT HCT116 C17 Fusion

characteristic: External Id

text: Cardiff University

text: live

text: Human

text: Mid-crisis

text: carcinoma

text: Telomere fusion ampicon-seq

characteristic: description

text: Cell culture

text: Homo sapiens

text: WT HCT116 C17 Fusion

text: male

text: colon

text: HCT116 WT Clone 17 crisis fusion


POLQ-/- HCT116 C1 Fusion

text: Cardiff University

text: live

text: Human

text: Mid-crisis

text: carcinoma

text: Telomere fusion ampicon-seq

text: Cell culture

characteristic: isolate

text: Homo sapiens

text: POLQ-/- HCT116 C1 Fusion

text: male

text: colon

text: HCT116 POLQ-/- Clone 1 crisis fusion


POLQ-/- HCT116 C2 Fusion

text: Cardiff University

text: live

text: Human

text: Mid-crisis

text: carcinoma

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: POLQ-/- HCT116 C2 Fusion

text: male

text: colon

characteristic: tissue

text: HCT116 POLQ-/- Clone 2 crisis fusion


POLQ-/- HCT116 C7 Fusion

text: Cardiff University

characteristic: INSDC center name

text: live

text: Human

text: Mid-crisis

text: carcinoma

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: POLQ-/- HCT116 C7 Fusion

text: male

text: colon

text: HCT116 POLQ-/- Clone 7 crisis fusion


POLQ-/- HCT116 C10 Fusion

text: Cardiff University

characteristic: INSDC first public

text: live

text: Human

text: Mid-crisis

text: carcinoma

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: POLQ-/- HCT116 C10 Fusion

text: male

text: colon

text: HCT116 POLQ-/- Clone 10 crisis fusion


WT HCT116 Parental

text: Cardiff University

characteristic: INSDC last update

text: live

text: Human

text: parental

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HCT116 Parental

text: male

text: colon

text: HCT116 WT parental


POLQ-/- HCT116 Parental

text: Cardiff University

text: live

characteristic: INSDC status

text: Human

text: parental

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HCT116 Parental

text: male

text: colon

text: HCT116 POLQ-/- parental


WT HCT116 C1 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

characteristic: age

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HCT116 C1 Early crisis WGS

text: male

text: colon

text: HCT116 WT Clone 1 Early crisis WGS


WT HCT116 C1 Late crisis WGS

text: Cardiff University

text: live

text: Human

text: Late crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HCT116 C1 Late crisis WGS

characteristic: property

text: male

text: colon

text: HCT116 WT Clone 1 Late crisis WGS


WT HCT116 C3 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HCT116 C3 Early crisis WGS

text: male

characteristic: sex

text: colon

text: HCT116 WT Clone 3 Early crisis WGS


WT HCT116 C3 Late crisis WGS

text: Cardiff University

characteristic: INSDC secondary accession

text: live

text: Human

text: Late crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HCT116 C3 Late crisis WGS

text: male

text: colon

text: HCT116 WT Clone 3 Late crisis WGS


WT HCT116 C11 Early crisis WGS

text: Cardiff University

text: live

text: Human

characteristic: SRA accession

text: Early crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HCT116 C11 Early crisis WGS

text: male

text: colon

text: HCT116 WT Clone 11 Early crisis WGS


WT HCT116 C11 Late crisis WGS

text: Cardiff University

text: live

text: Human

text: Late crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

characteristic: organism

text: WT HCT116 C11 Late crisis WGS

text: male

text: colon

text: HCT116 WT Clone 11 Late crisis WGS


WT HCT116 C17 Early crisis WGS

text: Cardiff University

text: live

text: Human

characteristic: NCBI submission model

text: Early crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HCT116 C17 Early crisis WGS

text: male

text: colon

text: HCT116 WT Clone 17 Early crisis WGS


WT HCT116 C17 Late crisis WGS

text: Cardiff University

text: live

text: Human

characteristic: NCBI submission package

text: Late crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HCT116 C17 Late crisis WGS

text: male

text: colon

text: HCT116 WT Clone 17 Late crisis WGS


POLQ-/- HCT116 C1 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HCT116 C1 Early crisis WGS

text: male

text: colon

text: HCT116 POLQ-/- Clone 1 Early crisis WGS

characteristic: title


POLQ-/- HCT116 C1 Late crisis WGS

characteristic: External Id

text: Cardiff University

text: live

text: Human

text: Late crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HCT116 C1 Late crisis WGS

text: male

text: colon

text: HCT116 POLQ-/- Clone 1 Late crisis WGS


POLQ-/- HCT116 C2 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

text: carcinoma

text: Whole genome sequencing sample

characteristic: description

text: Cell culture

text: Homo sapiens

text: POLQ-/- HCT116 C2 Early crisis WGS

text: male

text: colon

text: HCT116 POLQ-/- Clone 2 Early crisis WGS


POLQ-/- HCT116 C2 Late crisis WGS

text: Cardiff University

text: live

text: Human

text: Late crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

characteristic: isolate

text: Homo sapiens

text: POLQ-/- HCT116 C2 Late crisis WGS

text: male

text: colon

text: HCT116 POLQ-/- Clone 2 Late crisis WGS


POLQ-/- HCT116 C7 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HCT116 C7 Early crisis WGS

text: male

text: colon

characteristic: tissue

text: HCT116 POLQ-/- Clone 7 Early crisis WGS


POLQ-/- HCT116 C7 Late crisis WGS

text: Cardiff University

characteristic: INSDC center name

text: live

text: Human

text: Late crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HCT116 C7 Late crisis WGS

text: male

text: colon

text: HCT116 POLQ-/- Clone 7 Late crisis WGS


POLQ-/- HCT116 C10 Early crisis WGS

text: Cardiff University

characteristic: INSDC first public

text: live

text: Human

text: Early crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HCT116 C10 Early crisis WGS

text: male

text: colon

text: HCT116 POLQ-/- Clone 10 Early crisis WGS


POLQ-/- HCT116 C10 Late crisis WGS

text: Cardiff University

characteristic: INSDC last update

text: live

text: Human

text: Late crisis

text: carcinoma

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HCT116 C10 Late crisis WGS

text: male

text: colon

text: HCT116 POLQ-/- Clone 10 Late crisis WGS


WT HAP1 C1 Fusion

text: Cardiff University

text: live

characteristic: INSDC status

text: Human

text: Mid-crisis

text: Prof. Geoffrey Higgins, Department of Oncology, University of Oxford, UK

text: myeloid leukaemia

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: WT HAP1 C1 Fusion

text: male

text: CML

text: HAP1 WT Clone 1 crisis fusion


WT HAP1 C7 Fusion

text: Cardiff University

text: live

text: Human

text: Mid-crisis

characteristic: age

text: myeloid leukaemia

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: WT HAP1 C7 Fusion

text: male

text: CML

text: HAP1 WT Clone 7 crisis fusion


WT HAP1 C8 Fusion

text: Cardiff University

text: live

text: Human

text: Mid-crisis

text: myeloid leukaemia

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: WT HAP1 C8 Fusion

characteristic: property

text: male

text: CML

text: HAP1 WT Clone 8 crisis fusion


WT HAP1 C11 Fusion

text: Cardiff University

text: live

text: Human

text: Mid-crisis

text: myeloid leukaemia

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: WT HAP1 C11 Fusion

text: male

characteristic: sex

text: CML

text: HAP1 WT Clone 11 crisis fusion


WT HAP1 C12 Fusion

text: Cardiff University

characteristic: INSDC secondary accession

text: live

text: Human

text: Mid-crisis

text: myeloid leukaemia

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: WT HAP1 C12 Fusion

text: male

text: CML

text: HAP1 WT Clone 12 crisis fusion


POLQ-/- HAP1 C2 Fusion

text: Cardiff University

text: live

text: Human

characteristic: SRA accession

text: Mid-crisis

text: myeloid leukaemia

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C2 Fusion

text: male

text: CML

text: HAP1 POLQ-/- Clone 2 crisis fusion


POLQ-/- HAP1 C3 Fusion

text: Cardiff University

text: live

text: Human

text: Mid-crisis

text: myeloid leukaemia

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

characteristic: organism

text: POLQ-/- HAP1 C3 Fusion

text: male

text: CML

text: HAP1 POLQ-/- Clone 3 crisis fusion


POLQ-/- HAP1 C5 Fusion

text: Cardiff University

text: live

text: Human

characteristic: NCBI submission model

text: Mid-crisis

text: myeloid leukaemia

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C5 Fusion

text: male

text: CML

text: HAP1 POLQ-/- Clone 5 crisis fusion


POLQ-/- HAP1 C8 Fusion

text: Cardiff University

text: live

text: Human

characteristic: NCBI submission package

text: Mid-crisis

text: myeloid leukaemia

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C8 Fusion

text: male

text: CML

text: HAP1 POLQ-/- Clone 8 crisis fusion


POLQ-/- HAP1 C10 Fusion

text: Cardiff University

text: live

text: Human

text: Mid-crisis

text: myeloid leukaemia

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C10 Fusion

text: male

text: CML

text: HAP1 POLQ-/- Clone 10 crisis fusion

characteristic: title


WT HAP1 Parental

characteristic: External Id

text: Cardiff University

text: live

text: Human

text: parental

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 Parental

text: male

text: CML

text: HAP1 WT parental


POLQ-/- HAP1 Parental

text: Cardiff University

text: live

text: Human

text: parental

text: myeloid leukaemia

text: Whole genome sequencing sample

characteristic: description

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 Parental

text: male

text: CML

text: HAP1 POLQ-/- parental


WT HAP1 C1 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

characteristic: isolate

text: Homo sapiens

text: WT HAP1 C1 Early crisis WGS

text: male

text: CML

text: HAP1 WT Clone 1 Early crisis WGS


WT HAP1 C1 Late crisis WGS

text: Cardiff University

text: live

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C1 Late crisis WGS

text: male

text: CML

characteristic: tissue

text: HAP1 WT Clone 1 Late crisis WGS


WT HAP1 C7 Early crisis WGS

text: Cardiff University

characteristic: INSDC center name

text: live

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C7 Early crisis WGS

text: male

text: CML

text: HAP1 WT Clone 7 Early crisis WGS


WT HAP1 C7 Late crisis WGS

text: Cardiff University

characteristic: INSDC first public

text: live

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C7 Late crisis WGS

text: male

text: CML

text: HAP1 WT Clone 7 Late crisis WGS


WT HAP1 C8 Early crisis WGS

text: Cardiff University

characteristic: INSDC last update

text: live

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C8 Early crisis WGS

text: male

text: CML

text: HAP1 WT Clone 8 Early crisis WGS


WT HAP1 C8 Late crisis WGS

text: Cardiff University

text: live

characteristic: INSDC status

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C8 Late crisis WGS

text: male

text: CML

text: HAP1 WT Clone 8 Late crisis WGS


WT HAP1 C9 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

characteristic: age

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C9 Early crisis WGS

text: male

text: CML

text: HAP1 WT Clone 9 Early crisis WGS


WT HAP1 C9 Late crisis WGS

text: Cardiff University

text: live

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C9 Late crisis WGS

characteristic: property

text: male

text: CML

text: HAP1 WT Clone 9 Late crisis WGS


WT HAP1 C11 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C11 Early crisis WGS

text: male

characteristic: sex

text: CML

text: HAP1 WT Clone 11 Early crisis WGS


WT HAP1 C11 Late crisis WGS

text: Cardiff University

characteristic: INSDC secondary accession

text: live

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C11 Late crisis WGS

text: male

text: CML

text: HAP1 WT Clone 11 Late crisis WGS


WT HAP1 C12 Early crisis WGS

text: Cardiff University

text: live

text: Human

characteristic: SRA accession

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C12 Early crisis WGS

text: male

text: CML

text: HAP1 WT Clone 12 Early crisis WGS


WT HAP1 C12 Late crisis WGS

text: Cardiff University

text: live

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

characteristic: organism

text: WT HAP1 C12 Late crisis WGS

text: male

text: CML

text: HAP1 WT Clone 12 Late crisis WGS


WT HAP1 C13 Early crisis WGS

text: Cardiff University

text: live

text: Human

characteristic: NCBI submission model

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C13 Early crisis WGS

text: male

text: CML

text: HAP1 WT Clone 13 Early crisis WGS


WT HAP1 C13 Late crisis WGS

text: Cardiff University

text: live

text: Human

characteristic: NCBI submission package

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C13 Late crisis WGS

text: male

text: CML

text: HAP1 WT Clone 13 Late crisis WGS


WT HAP1 C15 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C15 Early crisis WGS

text: male

text: CML

text: HAP1 WT Clone 15 Early crisis WGS

characteristic: title


WT HAP1 C15 Late crisis WGS

characteristic: External Id

text: Cardiff University

text: live

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: WT HAP1 C15 Late crisis WGS

text: male

text: CML

text: HAP1 WT Clone 15 Late crisis WGS


POLQ-/- HAP1 C1 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

characteristic: description

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C1 Early crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 1 Early crisis WGS


POLQ-/- HAP1 C1 Late crisis WGS

text: Cardiff University

text: live

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

characteristic: isolate

text: Homo sapiens

text: POLQ-/- HAP1 C1 Late crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 1 Late crisis WGS


POLQ-/- HAP1 C2 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C2 Early crisis WGS

text: male

text: CML

characteristic: tissue

text: HAP1 POLQ-/- Clone 2 Early crisis WGS


POLQ-/- HAP1 C2 Late crisis WGS

text: Cardiff University

characteristic: INSDC center name

text: live

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C2 Late crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 2 Late crisis WGS


POLQ-/- HAP1 C3 Early crisis WGS

text: Cardiff University

characteristic: INSDC first public

text: live

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C3 Early crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 3 Early crisis WGS


POLQ-/- HAP1 C3 Late crisis WGS

text: Cardiff University

characteristic: INSDC last update

text: live

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C3 Late crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 3 Late crisis WGS


POLQ-/- HAP1 C4 Early crisis WGS

text: Cardiff University

text: live

characteristic: INSDC status

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C4 Early crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 4 Early crisis WGS


POLQ-/- HAP1 C4 Late crisis WGS

text: Cardiff University

text: live

text: Human

text: Late crisis

characteristic: age

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C4 Late crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 4 Late crisis WGS


POLQ-/- HAP1 C5 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C5 Early crisis WGS

characteristic: property

text: male

text: CML

text: HAP1 POLQ-/- Clone 5 Early crisis WGS


POLQ-/- HAP1 C5 Late crisis WGS

text: Cardiff University

text: live

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C5 Late crisis WGS

text: male

characteristic: sex

text: CML

text: HAP1 POLQ-/- Clone 5 Late crisis WGS


POLQ-/- HAP1 C6 Early crisis WGS

text: Cardiff University

characteristic: INSDC secondary accession

text: live

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C6 Early crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 6 Early crisis WGS


POLQ-/- HAP1 C6 Late crisis WGS

text: Cardiff University

text: live

text: Human

characteristic: SRA accession

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C6 Late crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 6 Late crisis WGS


POLQ-/- HAP1 C8 Early crisis WGS

text: Cardiff University

text: live

text: Human

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

characteristic: organism

text: POLQ-/- HAP1 C8 Early crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 8 Early crisis WGS


POLQ-/- HAP1 C8 Late crisis WGS

text: Cardiff University

text: live

text: Human

characteristic: NCBI submission model

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C8 Late crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 8 Late crisis WGS


POLQ-/- HAP1 C10 Early crisis WGS

text: Cardiff University

text: live

text: Human

characteristic: NCBI submission package

text: Early crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C10 Early crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 10 Early crisis WGS


POLQ-/- HAP1 C10 Late crisis WGS

text: Cardiff University

text: live

text: Human

text: Late crisis

text: myeloid leukaemia

text: Whole genome sequencing sample

text: Cell culture

text: Homo sapiens

text: POLQ-/- HAP1 C10 Late crisis WGS

text: male

text: CML

text: HAP1 POLQ-/- Clone 10 Late crisis WGS

characteristic: title


NBNmt Early crisis Fusion

characteristic: External Id

text: Cardiff University

text: live

text: Human

text: Early crisis

text: Originally obtained from the Coriell Institute Cell Repository and cultured to generate the samples described in this study

text: fibroblast

text: Telomere fusion ampicon-seq

text: Cell culture

text: Homo sapiens

text: NBNmt Early crisis Fusion

text: female

text: skin

text: NBNmt Early crisis GM07166 fibroblast fusion


NBNmt Deep crisis Fusion

text: Cardiff University

text: live

text: Human

text: Deep crisis

text: fibroblast

text: Telomere fusion ampicon-seq

characteristic: description

text: Cell culture

text: Homo sapiens

text: NBNmt Deep crisis Fusion

text: female

text: skin

text: NBNmt Deep crisis GM07166 fibroblast fusion


NBNmt Late crisis Fusion

text: Cardiff University

text: live

text: Human

text: Late crisis

text: Originally obtained from the European Collection of Authenticated Cell Cultures (ECACC) and cultured to generate the samples described in this study

text: fibroblast

text: Telomere fusion ampicon-seq

text: Cell culture

characteristic: isolate

text: Homo sapiens

text: NBNmt Late crisis Fusion

text: female

text: skin

text: NBNmt Late crisis GM07166 fibroblast fusion


text: Rutgers University

text: live

text: Model organism or animal

text: UCSD

text: embryo (8-16h)

text: Drosophila ananassae

text: pooled male and female

characteristic: strain

text: whole organism

characteristic: tissue

text: Model organism or animal sample from Drosophila ananassae


text: Rutgers University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

text: UCSD

text: embryo (8-16h)

text: Drosophila biarmipes

text: pooled male and female

text: whole organism

text: Model organism or animal sample from Drosophila biarmipes


text: Rutgers University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: UCSD, Washington University

text: embryo (8-16h)

text: Drosophila elegans

text: pooled male and female

text: whole organism

text: Model organism or animal sample from Drosophila elegans


text: Rutgers University

text: live

text: Model organism or animal

text: DSSC-Cornell

text: embryo (8-16h)

text: Drosophila erecta

text: pooled male and female

text: whole organism

text: Model organism or animal sample from Drosophila erecta


text: Rutgers University

text: live

text: Model organism or animal

text: DSSC-Cornell

text: embryo (8-16h)

text: Drosophila eugracilis

text: pooled male and female

text: whole organism

text: Model organism or animal sample from Drosophila eugracilis


text: Rutgers University

text: live

text: Model organism or animal

text: UCSD

text: embryo (8-16h)

text: Drosophila ficusphila

text: pooled male and female

text: whole organism

text: Model organism or animal sample from Drosophila ficusphila


text: Rutgers University

text: live

text: Model organism or animal

text: Drosophila Genetic Reference Panel (DGRP)

text: embryo (8-16h)

text: Drosophila melanogaster

text: pooled male and female

text: whole organism

text: Model organism or animal sample from Drosophila melanogaster


text: Rutgers University

text: live

text: Model organism or animal

text: Dr. Andrew Kern

text: embryo (8-16h)

text: Drosophila simulans

text: pooled male and female

text: whole organism

text: Model organism or animal sample from Drosophila simulans


text: Rutgers University

text: live

text: Model organism or animal

text: DSSC-Cornell, Washington University

text: embryo (8-16h)

text: Drosophila takahashii

text: pooled male and female

text: whole organism

text: Model organism or animal sample from Drosophila takahashii


text: Rutgers University

text: live

text: Model organism or animal

text: Ehime University Fly Stock Center

text: embryo (8-16h)

text: Drosophila takahashii

text: pooled male and female

text: whole organism


text: Rutgers University

text: live

text: Model organism or animal

text: UCSD

text: embryo (8-16h)

text: Drosophila yakuba

text: pooled male and female

text: whole organism

text: Model organism or animal sample from Drosophila yakuba


text: Landau Lab, Medicine, Weill Cornell Medical College

text: live

text: Generic

text: Visium Spatial Gene Expression Kit

characteristic: library construction

text: Mus musculus

text: Breast tumor

text: SPOTS Breast cancer replicate C ADT

text: PBS-1% BSA, and embedded in OCT

characteristic: treatment


characteristic: INSDC secondary accession

text: live

text: Generic

text: Visium Spatial Gene Expression Kit

text: Mus musculus

text: Breast tumor

text: SPOTS Breast cancer replicate B ADT

text: PBS-1% BSA, and embedded in OCT


text: live

text: Generic

characteristic: SRA accession

text: Visium Spatial Gene Expression Kit

text: Mus musculus

text: Breast tumor

text: SPOTS Breast cancer replicate A ADT

text: PBS-1% BSA, and embedded in OCT


text: live

text: Generic

text: Visium Spatial Gene Expression Kit

text: Mus musculus

characteristic: organism

text: Breast tumor

text: SPOTS Breast cancer replicate C GEX

text: PBS-1% BSA, and embedded in OCT


text: live

text: Generic

characteristic: NCBI submission model

text: Visium Spatial Gene Expression Kit

text: Mus musculus

text: Breast tumor

text: SPOTS Breast cancer replicate B GEX

text: PBS-1% BSA, and embedded in OCT


text: live

text: Generic

characteristic: NCBI submission package

text: Visium Spatial Gene Expression Kit

text: Mus musculus

text: Breast tumor

text: SPOTS Breast cancer replicate A GEX

text: PBS-1% BSA, and embedded in OCT


text: Université de Montréal

text: live

text: Generic

characteristic: barcode

text: Homo sapiens

characteristic: randomization code

text: DMSO

characteristic: stimulation

text: HIV+ART 5-9

characteristic: title


characteristic: External Id

text: Université de Montréal

text: live

text: Generic

text: Homo sapiens

text: HIV+ART 4-8


text: Université de Montréal

text: live

text: Generic

text: Homo sapiens

text: DMSO

text: HIV+ART 4-7


text: Université de Montréal

text: live

text: Generic

text: Homo sapiens

text: HIV+ART 3-6


text: Université de Montréal

text: live

text: Generic

text: Homo sapiens

text: DMSO

text: HIV+ART 3-5


text: Université de Montréal

text: live

text: Generic

text: Homo sapiens

text: HIV+ART 2-4


text: Université de Montréal

text: live

text: Generic

text: Homo sapiens

text: DMSO

text: HIV+ART 2-3


text: Université de Montréal

text: live

text: Generic

text: Homo sapiens

text: HIV+ART 1-2


text: Université de Montréal

text: live

text: Generic

text: Homo sapiens

text: HIV+ART 6-12


text: Université de Montréal

text: live

text: Generic

text: Homo sapiens

text: DMSO

text: HIV+ART 6-11


text: Université de Montréal

text: live

text: Generic

text: Homo sapiens

text: HIV+ART 5-10


text: Université de Montréal

text: live

text: Generic

text: Homo sapiens

text: DMSO

text: HIV+ART 1-1


text: Georg-August University Goettingen

text: live

text: Metagenome or environmental

text: Spain

text: iron precipitate

characteristic: host

text: Stream rich in Th-U

text: 42.6037 N 6.2525 W

text: freshwater metagenome

text: El Coron


text: Georg-August University Goettingen

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: Spain

text: iron precipitate

text: Stream rich in Th-U

text: 42.5952 N 6.2413 W

text: freshwater metagenome

text: Aborregados


text: Rangos Bldg 475, Institute for Basic Biomedical Sciences, The Johns Hopkins University School of Medicine

characteristic: INSDC first public

text: live

text: Generic

text: Pcx L-/-

characteristic: genotype

text: Mus musculus

text: Liver

characteristic: strain

text: Liver

characteristic: tissue

text: Pcx liver, rep4

text: 24 hour fast


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Pcx L-/-

text: Mus musculus

text: Liver

text: Liver

text: Pcx liver, rep3

text: 24 hour fast

characteristic: treatment


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Pcx L-/-

text: Mus musculus

characteristic: organism

text: Liver

text: Liver

text: Pcx liver, rep2

text: 24 hour fast


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Pcx L-/-

text: Mus musculus

text: Liver

text: Liver

text: Pcx liver, rep1

text: 24 hour fast


text: live

text: Generic

text: WT

text: Mus musculus

text: Liver

text: Liver

text: WT liver, rep4

text: 24 hour fast


text: live

text: Generic

text: WT

text: Mus musculus

text: Liver

text: Liver

text: WT liver, rep3

text: 24 hour fast


text: live

text: Generic

text: WT

text: Mus musculus

text: Liver

text: Liver

text: WT liver, rep2

text: 24 hour fast


text: live

text: Generic

text: WT

text: Mus musculus

text: Liver

text: Liver

text: WT liver, rep1

text: 24 hour fast


text: Newcastle University

text: live

text: Generic

characteristic: extraction date

text: negative

text: Homo sapiens

text: iPS-macrophage

text: ZIKV

characteristic: zikv


characteristic: External Id

text: Newcastle University

text: live

text: Generic

text: negative

text: Homo sapiens

text: iPS-macrophage

characteristic: title

text: MOCK


text: Newcastle University

characteristic: INSDC center name

text: live

text: Generic

text: positive

text: Homo sapiens

text: iPS-macrophage

text: ZIKV


text: Newcastle University

characteristic: INSDC first public

text: live

text: Generic

text: positive

text: Homo sapiens

text: iPS-macrophage

text: MOCK


text: Nanyang Techology University

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.plant-associated

text: Keywords: GSC:MIxS;MIMS:5.0

characteristic: description

text: field condition

text: field soil

text: China: Xiang xi, Hunan

text: Zea mays L. and Lilium longiflorum

characteristic: host

text: 29.4 N 109.5 E

text: rhizosphere metagenome

text: MIMS Environmental/Metagenome sample from rhizosphere metagenome


text: Surgery, Erasmus MC

text: live

text: Generic

characteristic: age

text: Cholangicoyte organoids

characteristic: cell type

text: male

characteristic: gender

text: Homo sapiens

characteristic: sample id in manuscript

text: 3D-organoids cultured in BME

text: Liver

characteristic: tissue

text: ICO1, 6 hrs reoxygenation after hypoxia

text: Reoxygenation (6 hours)


text: Surgery, Erasmus MC

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Cholangicoyte organoids

text: male

text: Homo sapiens

text: 3D-organoids cultured in BME

text: Liver

text: ICO1, No treatment

text: Normoxia

characteristic: treatment


text: Surgery, Erasmus MC

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Cholangicoyte organoids

text: male

text: Homo sapiens

characteristic: organism

text: 3D-organoids cultured in BME

text: Liver

text: ICO1, Hypoxia treated

text: Hypoxia (72 hours)


characteristic: External Id

text: Surgery, Erasmus MC

characteristic: INSDC center name

text: live

text: Generic

text: Cholangicoyte organoids

text: female

text: Homo sapiens

text: 3D-organoids cultured in BME

text: Liver

text: ICO5, 6 hrs reoxygenation after hypoxia

characteristic: title

text: Reoxygenation (6 hours)


text: Surgery, Erasmus MC

characteristic: INSDC first public

text: live

text: Generic

text: Cholangicoyte organoids

text: female

text: Homo sapiens

text: 3D-organoids cultured in BME

text: Liver

text: ICO5, No treatment

text: Normoxia


text: Surgery, Erasmus MC

text: live

text: Generic

characteristic: age

text: Cholangicoyte organoids

text: female

text: Homo sapiens

text: 3D-organoids cultured in BME

text: Liver

text: ICO5, Hypoxia treated

text: Hypoxia (72 hours)


text: Surgery, Erasmus MC

text: live

text: Generic

text: Cholangicoyte organoids

characteristic: cell type

text: male

text: Homo sapiens

text: 3D-organoids cultured in BME

text: Liver

text: ICO3, 6 hrs reoxygenation after hypoxia

text: Reoxygenation (6 hours)


text: Surgery, Erasmus MC

text: live

text: Generic

text: Cholangicoyte organoids

text: male

characteristic: gender

text: Homo sapiens

text: 3D-organoids cultured in BME

text: Liver

text: ICO3, No treatment

text: Normoxia


text: Surgery, Erasmus MC

text: live

text: Generic

text: Cholangicoyte organoids

text: male

text: Homo sapiens

characteristic: sample id in manuscript

text: 3D-organoids cultured in BME

text: Liver

text: ICO3, Hypoxia treated

text: Hypoxia (72 hours)


text: Surgery, Erasmus MC

text: live

text: Generic

text: Cholangicoyte organoids

text: male

text: Homo sapiens

text: 3D-organoids cultured in BME

text: Liver

characteristic: tissue

text: ICO2, 6 hrs reoxygenation after hypoxia

text: Reoxygenation (6 hours)


text: Surgery, Erasmus MC

characteristic: INSDC last update

text: live

text: Generic

text: Cholangicoyte organoids

text: male

text: Homo sapiens

text: 3D-organoids cultured in BME

text: Liver

text: ICO2, No treatment

text: Normoxia


text: Surgery, Erasmus MC

characteristic: INSDC secondary accession

text: live

text: Generic

text: Cholangicoyte organoids

text: male

text: Homo sapiens

text: 3D-organoids cultured in BME

text: Liver

text: ICO2, Hypoxia treated

text: Hypoxia (72 hours)


text: Texas A&M University

text: live

characteristic: INSDC status

characteristic: Library ID

text: Plant

text: 10 weeks

text: LA0716 X VF36

characteristic: cultivar

text: VEGETATIVE

text: USA: College Station

text: Solanum pennellii

text: Leaf

text: Plant sample from Solanum pennellii


text: Bangor University

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: SRA accession

text: United Kingdom: Wales

text: soil

text: 53.242876 N 4.017077 W

text: Patch

characteristic: location

text: soil metagenome

characteristic: replicate

text: Metagenome or environmental sample from soil metagenome

characteristic: transect


characteristic: External Id

text: Bangor University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: United Kingdom: Wales

text: soil

text: 53.242876 N 4.017077 W

text: Inner Edge

text: soil metagenome

characteristic: organism

characteristic: title


text: Bangor University

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: United Kingdom: Wales

text: soil

text: 53.242876 N 4.017077 W

text: Outer Edge

text: soil metagenome


text: Bangor University

text: live

text: Metagenome or environmental

text: United Kingdom: Wales

text: soil

text: 53.242876 N 4.017077 W

text: Control

text: soil metagenome


text: Fujian Cancer Hospital

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:5.0

characteristic: description

text: digestive tract environment [ENVO: 01001033]

text: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition [OBI: 0002224]

text: China: Fujian

text: Homo sapiens

characteristic: host

text: 26.08 N 119.28 E

text: human gut metagenome

text: 16S rDNA sequencing of gut microbiome: human fecal sample


text: University of Bayreuth

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

text: DSMZ-German Collection of Microorganisms and Cell Cultures

text: Total RNA-seq of Rhodovastum atsumiense G2-11 cultivated under photoheterotrophic conditions. Cells were collected at mid-logarythmic phase. Performed for two biological replicates.

text: wildtype

characteristic: genotype

text: Japan: Aichi Prefecture, Atsumi Peninsula, Tahara

text: submerged paddy field

text: Rhodovastum atsumiense

text: cell culture

characteristic: strain

text: Rhodovastum atsumiense G2-11, wildtype, cultivated photoheterotrophically

text: type strain of Rhodovastum atsumiense

characteristic: type-material


text: University of Bayreuth

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: SRA accession

text: Germany

text: C1_MAG mutant

characteristic: isolate

text: Lab constructed

text: Rhodovastum atsumiense

text: cell culture

text: Microbe sample from Rhodovastum atsumiense


characteristic: External Id

text: University of Bayreuth

text: live

text: Microbe, viral or environmental

text: Germany

text: C1_nonMAG mutant

text: Lab constructed

text: Rhodovastum atsumiense

text: cell culture


text: University of Bayreuth

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: Germany

text: C2_MAG mutant

text: Lab constructed

text: Rhodovastum atsumiense

text: cell culture


text: University of Bayreuth

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: Germany

text: C2_nonMAG mutant

text: Lab constructed

text: Rhodovastum atsumiense

text: cell culture


text: University of Bayreuth

text: live

text: Microbe, viral or environmental

text: Germany

text: C3_MAG mutant

text: Lab constructed

text: Rhodovastum atsumiense

characteristic: organism

text: cell culture


text: University of Bayreuth

text: live

text: Microbe, viral or environmental

text: Germany

text: C3_nonMAG mutant

text: Lab constructed

text: Rhodovastum atsumiense

text: cell culture

characteristic: title


text: School of basic medicine science, Zhejiang University

characteristic: INSDC first public

text: live

text: Generic

characteristic: cell line

text: ectopic expression of SARS-COV-2 N protein

characteristic: genotype/variation

text: Homo sapiens

text: 293T cells


characteristic: INSDC last update

text: live

text: Generic

text: control

text: Homo sapiens

text: 293T cells


text: Omar Abdel-Wahab Laboratory, Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center

characteristic: INSDC secondary accession

text: live

text: Generic

text: CAAGCTAG

characteristic: index 1

text: ACGCACCT

characteristic: index 2

text: RBM10 antibody (Bethyl A301-006A)

characteristic: ip antibody

text: Homo sapiens

text: eCLIP

characteristic: protocol

text: Acute Myelogenous Leukemia


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: GCTTGTCA

text: ACGCACCT

text: RBM10 antibody (Bethyl A301-006A)

text: Homo sapiens

text: eCLIP

text: Acute Myelogenous Leukemia


text: live

text: Generic

characteristic: SRA accession

text: GGACTTGG

text: TACTCATA

text: RBM10 antibody (Bethyl A301-006A)

text: Homo sapiens

text: eCLIP

text: Acute Myelogenous Leukemia


characteristic: External Id

text: live

text: Generic

text: TTATAACC

text: TACTCATA

text: RBM10 antibody (Bethyl A301-006A)

text: Homo sapiens

text: eCLIP

text: Acute Myelogenous Leukemia


characteristic: INSDC center name

text: live

text: Generic

text: GCTTGTCA

text: CGCTATGT

text: Homo sapiens

text: eCLIP

text: Acute Myelogenous Leukemia


text: live

text: Generic

characteristic: NCBI submission package

text: ATCCACTG

text: CGCTATGT

text: Homo sapiens

text: eCLIP

text: Acute Myelogenous Leukemia


text: live

text: Generic

text: TGGATCGA

text: GTATGTTC

text: Homo sapiens

characteristic: organism

text: eCLIP

text: Acute Myelogenous Leukemia


text: live

text: Generic

text: CAAGCTAG

text: GTATGTTC

text: Homo sapiens

text: eCLIP

text: Acute Myelogenous Leukemia

characteristic: title


characteristic: INSDC first public

text: live

text: Generic

text: GGACTTGG

text: CTAGCGCT

text: Rabbit IgG (Thermo Fisher Scientific)

text: Homo sapiens

text: eCLIP

text: Acute Myelogenous Leukemia


text: live

text: Generic

characteristic: cell line

text: AAGTCCAA

text: CGTCTGCG

text: Homo sapiens

text: eCLIP

text: Acute Myelogenous Leukemia


text: live

text: Generic

characteristic: cell line modification

text: Venetoclax (10nM)

characteristic: drug treatment

text: 48 hours

characteristic: drug treatment duration

text: Homo sapiens

text: Acute Myelogenous Leukemia

text: RNAseq_MOLM13_sgROSA_Venetoclax_Replicate_3


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Venetoclax (10nM)

text: 48 hours

text: Homo sapiens

text: Acute Myelogenous Leukemia

text: RNAseq_MOLM13_sgROSA_Venetoclax_Replicate_2


text: live

text: Generic

text: Venetoclax (10nM)

text: 48 hours

text: Homo sapiens

text: Acute Myelogenous Leukemia

text: RNAseq_MOLM13_sgROSA_Venetoclax_Replicate_1


text: live

text: Generic

text: Venetoclax (10nM)

text: 48 hours

text: Homo sapiens

text: Acute Myelogenous Leukemia


text: live

text: Generic

text: DMSO vehicle

text: 48 hours

text: Homo sapiens

text: Acute Myelogenous Leukemia


text: live

text: Generic

text: Parental Cell Line

text: Venetoclax (10nM)

text: 48 hours

text: Homo sapiens

text: Acute Myelogenous Leukemia


text: live

text: Generic

text: Parental Cell Line

text: DMSO vehicle

text: 48 hours

text: Homo sapiens

text: Acute Myelogenous Leukemia


text: live

text: Generic

text: Parental Cell Line

text: SM09419 (100nM) + Venetoclax (10nM)

text: 48 hours

text: Homo sapiens

text: Acute Myelogenous Leukemia

text: RNAseq_MOLM13_SM09419+Venetoclax_Replicate_3


text: live

text: Generic

text: Parental Cell Line

text: SM09419 (100nM) + Venetoclax (10nM)

text: 48 hours

text: Homo sapiens

text: Acute Myelogenous Leukemia

text: RNAseq_MOLM13_SM09419+Venetoclax_Replicate_2


text: live

text: Generic

text: Parental Cell Line

text: SM09419 (100nM) + Venetoclax (10nM)

text: 48 hours

text: Homo sapiens

text: Acute Myelogenous Leukemia

text: RNAseq_MOLM13_SM09419+Venetoclax_Replicate_1


text: live

text: Generic

text: Parental Cell Line

text: SM09419 (100nM)

text: 48 hours

text: Homo sapiens

text: Acute Myelogenous Leukemia


text: University of Bayreuth

text: live

text: Microbe, viral or environmental

text: Germany

characteristic: isolate

text: lab constructed

text: Rhodovastum atsumiense

text: cell culture

text: MAI

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: Human acute myeloid leukemia (AML) cells

characteristic: cell type

text: human

characteristic: common name

text: Homo sapiens

text: Human AML cell MonoMac6

characteristic: treatment


characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: NCBI

text: human

text: Homo sapiens

characteristic: organism

text: Human AML cell MonoMac6

characteristic: title

text: shNS


text: North Carolina State University

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

text: USA

characteristic: geo loc name

text: Rep 1 hyp

characteristic: isolation source

text: Peptacetobacter hiranonis

text: bacterial monoculture

characteristic: sample type

text: TO 931

text: Microbe sample from Peptacetobacter hiranonis

text: type strain of Clostridium hiranonis

characteristic: type-material


text: North Carolina State University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: USA

text: Rep 1 neg

text: Peptacetobacter hiranonis

text: bacterial monoculture

text: TO 931

characteristic: strain

text: type strain of Clostridium hiranonis


characteristic: External Id

text: North Carolina State University

text: live

text: Microbe, viral or environmental

text: USA

text: Rep 2 hyp

text: Peptacetobacter hiranonis

text: bacterial monoculture

text: TO 931

text: type strain of Clostridium hiranonis


text: North Carolina State University

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: USA

text: Rep 2 neg

text: Peptacetobacter hiranonis

text: bacterial monoculture

text: TO 931

text: type strain of Clostridium hiranonis


text: North Carolina State University

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: USA

text: Rep 3 hyp

text: Peptacetobacter hiranonis

text: bacterial monoculture

text: TO 931

text: type strain of Clostridium hiranonis


text: North Carolina State University

text: live

text: Microbe, viral or environmental

text: USA

text: Rep 3 neg

text: Peptacetobacter hiranonis

characteristic: organism

text: bacterial monoculture

text: TO 931

text: type strain of Clostridium hiranonis


WT AM

text: Duke University Medical Center

text: live

text: Model organism or animal

text: 10 weeks

characteristic: age

text: alveolar macrophages

text: Alveolar macrophages from WT mouse treated with 3mg/kg of bleomycin

characteristic: description

text: pulmonary fibrosis

characteristic: disease

text: Mus musculus

text: female

characteristic: sex

text: lung

characteristic: tissue

text: WT AM

characteristic: title

text: bleomycin

characteristic: treatment


OPNKO AM

text: Duke University Medical Center

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Alveolar Macrophage

text: alveolar macrophages from OPNKO mice treated with 3mg/kg bleomycin

text: pulmonary fibrosis

text: osteopontin knock out

characteristic: genotype

text: Mus musculus

text: female

text: lungs

text: OPNKO AM

text: bleomycin


text: Biochemistry and Molecular Biology, University of Southern Denmark

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: PPARg-/-MEF-CAR cells

characteristic: cell line

text: DMSO

characteristic: ligand

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: ATAC, PPARg2-R212Q, rep2

characteristic: transduction


characteristic: External Id

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

characteristic: organism

text: PPARg-/-MEF-CAR cells

text: ATAC, PPARg2-E379K, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: ATAC, PPARg2-WT, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: ATAC, Control, rep2

text: Untransduced


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: DMSO

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: ATAC, PPARg2-R212Q, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: ATAC, PPARg2-E379K, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: ATAC, PPARg2-WT, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: ATAC, Control, rep1

text: Untransduced


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: MED1; Bethyl Laboratories A300-793A

characteristic: chip antibody

text: DMSO

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: Med1, R212Q, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: MED1; Bethyl Laboratories A300-793A

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: Med1, E379K, rep2

characteristic: title


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: MED1; Bethyl Laboratories A300-793A

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: Med1, WT, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: MED1; Bethyl Laboratories A300-793A

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: Med1, Control, rep2

text: Untransduced


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: MED1; Bethyl Laboratories A300-793A

text: DMSO

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: Med1, R212Q, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: MED1; Bethyl Laboratories A300-793A

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: Med1, E379K, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: MED1; Bethyl Laboratories A300-793A

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: Med1, WT, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: MED1; Bethyl Laboratories A300-793A

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: Med1, Control, rep1

text: Untransduced


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone and DMSO

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: Input, rep2

text: Cells transduced with Ad-HAmPPARg2-WT, Ad-HAmPPARg2-E379K, Ad-HAmPPARgR212Q or untransduced control were pooled in equal ratio.


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone and DMSO

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: Input, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: H3K27ac; Abcam Ab4729

text: DMSO

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: H3K27ac, R212Q, rep2

text: Untransduced


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: H3K27ac; Abcam Ab4729

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: H3K27ac, E379K, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: H3K27ac; Abcam Ab4729

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: H3K27ac, PPARg2-WT, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: H3K27ac; Abcam Ab4729

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: H3K27ac, UT, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: H3K27ac; Abcam Ab4729

text: DMSO

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: H3K27ac, R212Q, rep1

text: Untransduced


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: H3K27ac; Abcam Ab4729

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: H3K27ac, E379K, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: H3K27ac; Abcam Ab4729

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: H3K27ac, PPARg2-WT, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: H3K27ac; Abcam Ab4729

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: H3K27ac, UT, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: HA; Abcam ab9110

text: DMSO

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: HA, untransduced control, rep2

text: Untransduced


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: HA; Abcam ab9110

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: HA, PPARg R212Q, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: HA; Abcam ab9110

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: HA, PPARg E379K, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: HA; Abcam ab9110

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: HA, PPARg WT, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: HA; Abcam ab9110

text: DMSO

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: HA, untransduced control, rep1

text: Untransduced


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: HA; Abcam ab9110

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: HA, PPARg R212Q, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: HA; Abcam ab9110

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: HA, PPARg E379K, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: HA; Abcam ab9110

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: HA, PPARg WT, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: DMSO

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: RNA, untransduced control, rep2

text: Untransduced


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: RNA, PPARg R212Q, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: RNA, PPARg E379K, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: RNA, PPARg WT, rep2


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: DMSO

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: RNA, untransduced control, rep1

text: Untransduced


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: RNA, PPARg R212Q, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: RNA, PPARg E379K, rep1


text: live

text: Generic

text: PPARg-/-MEF-CAR cells

text: 1 µM Rosiglitazone

text: Mus musculus

text: PPARg-/-MEF-CAR cells

text: RNA, PPARg WT, rep1


text: Stefanska Lab, Land and Food Systems, The University of British Columbia

text: live

text: Generic

text: 1 year old

characteristic: age

text: CDAA

characteristic: diet

text: wild type

text: Rattus norvegicus

text: Liver

text: Fischer 344 (F344)

characteristic: strain

text: Liver

characteristic: tissue

text: Liver CDAA Rat4


characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 1 year old

text: CDAA

text: wild type

text: Rattus norvegicus

text: Liver

text: Fischer 344 (F344)

text: Liver

text: Liver CDAA Rat3


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 1 year old

text: CDAA

text: wild type

characteristic: genotype

text: Rattus norvegicus

text: Liver

text: Fischer 344 (F344)

text: Liver

text: Liver CDAA Rat2


characteristic: External Id

text: live

text: Generic

text: 1 year old

text: CDAA

text: wild type

text: Rattus norvegicus

text: Liver

text: Fischer 344 (F344)

text: Liver

text: Liver CDAA Rat1


characteristic: INSDC first public

text: live

text: Generic

text: 1 year old

text: CSAA

text: wild type

text: Rattus norvegicus

text: Liver

text: Fischer 344 (F344)

text: Liver

text: Liver CSAA Rat4


text: live

text: Generic

characteristic: SRA accession

text: 1 year old

text: CSAA

text: wild type

text: Rattus norvegicus

text: Liver

text: Fischer 344 (F344)

text: Liver

text: Liver CSAA Rat3


text: live

text: Generic

text: 1 year old

text: CSAA

text: wild type

text: Rattus norvegicus

characteristic: organism

text: Liver

text: Fischer 344 (F344)

text: Liver

text: Liver CSAA Rat2


text: live

text: Generic

text: 1 year old

text: CSAA

text: wild type

text: Rattus norvegicus

text: Liver

text: Fischer 344 (F344)

text: Liver

text: Liver CSAA Rat1


text: Systems Pharmacology and Translational Therapeutics,Institute for Immunology, University of Pennsylvania

text: live

text: Generic

characteristic: background strain

text: P14 CD8 T cells

characteristic: cell type

text: Mus musculus

text: P14 CD8 T cells from LCMV Armstrong infection 200 days post infection

text: No

characteristic: treatment


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: P14 CD8 T cells from LCMV Armstrong infection 60 days post infection

characteristic: title

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: P14 CD8 T cells from LCMV Clone13 infection+anti PDL1 treatment

text: RNA-Seq - Cl13D30+aPDL1


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: P14 CD8 T cells from LCMV Clone13 infection 30 days post infection

text: RNA-Seq - Cl13D30

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: P14 CD8 T cells from LCMV Clone13 infection 15 days post infection

text: RNA-Seq - Cl13D15

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: P14 CD8 T cells from LCMV Clone13 infection 8 days post infection

text: RNA-Seq - Cl13D8

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: P14 CD8 T cells from LCMV Armstrong infection 30 days post infection

text: RNA-Seq - ArmD30

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: P14 CD8 T cells from LCMV Armstrong infection 15 days post infection

text: RNA-Seq - ArmD15

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: P14 CD8 T cells from LCMV Armstrong infection 8 days post infection

text: RNA-Seq - ArmD8

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: P14 naïve CD8 T cells

text: RNA-Seq - Naïve

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: No


text: live

text: Generic

text: P14 CD8 T cells

text: Mus musculus

text: P14 naïve CD8 T cells

text: Naïve - scA101

text: No


text: Ronan McCarthy lab (RMC), Life Sciences, Brunel University London

text: live

text: Generic

text: 42 C, 180 rpm, grown to mid- exponential phase (OD600 0.6 approx.)

characteristic: culture conditions

text: Acinetobacter baumannii AB5075

text: Acinetobacter baumannii AB5075 (VIR-O colony morphology)

characteristic: strain

text: AB5075_control_repD [Sugar_Dminus]

text: water control


characteristic: INSDC center name

text: live

text: Generic

text: 41 C, 180 rpm, grown to mid- exponential phase (OD600 0.6 approx.)

text: Acinetobacter baumannii AB5075

text: AB5075_control_repC [Sugar_Cminus]

text: water control


characteristic: INSDC last update

text: live

text: Generic

text: 40 C, 180 rpm, grown to mid- exponential phase (OD600 0.6 approx.)

text: Acinetobacter baumannii AB5075

text: AB5075_control_repA [Sugar_Aminus]

text: water control


text: live

text: Generic

characteristic: NCBI submission model

text: 39 C, 180 rpm, grown to mid- exponential phase (OD600 0.6 approx.)

text: Acinetobacter baumannii AB5075

text: AB5075_ace-K_repE [Sugar_Eplus]

text: 1.33% acesulfame K


text: live

text: Generic

characteristic: NCBI submission package

text: 38 C, 180 rpm, grown to mid- exponential phase (OD600 0.6 approx.)

text: Acinetobacter baumannii AB5075

text: AB5075_ace-K_repC [Sugar_Cplus]

text: 1.33% acesulfame K


characteristic: INSDC secondary accession

text: live

text: Generic

text: 37 C, 180 rpm, grown to mid- exponential phase (OD600 0.6 approx.)

text: Acinetobacter baumannii AB5075

text: AB5075_ace-K_repA [Sugar_Aplus]

text: 1.33% acesulfame K


text: Core Unit Bioinformatics, Berlin Institute of Health

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT17 (23:00)

characteristic: timepoint

text: Hippocampus

characteristic: tissue

text: Hippocampus 23:00 repl. 3


characteristic: External Id

characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT17 (23:00)

text: Hippocampus

text: Hippocampus 23:00 repl. 2


text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

characteristic: organism

text: Hippocampus

text: ZT17 (23:00)

text: Hippocampus

text: Hippocampus 23:00 repl. 1


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT13 (19:00)

text: Hippocampus

text: Hippocampus 19:00 repl. 3


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT13 (19:00)

text: Hippocampus

text: Hippocampus 19:00 repl. 2


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT13 (19:00)

text: Hippocampus

text: Hippocampus 19:00 repl. 1


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT9 (15:00)

text: Hippocampus

text: Hippocampus 15:00 repl. 3


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT9 (15:00)

text: Hippocampus

text: Hippocampus 15:00 repl. 2


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT9 (15:00)

text: Hippocampus

text: Hippocampus 15:00 repl. 1


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT5 (11:00)

text: Hippocampus

text: Hippocampus 11:00 repl. 3


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT5 (11:00)

text: Hippocampus

text: Hippocampus 11:00 repl. 2


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT5 (11:00)

text: Hippocampus

text: Hippocampus 11:00 repl. 1


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT1 (07:00)

text: Hippocampus

text: Hippocampus 07:00 repl. 3


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT1 (07:00)

text: Hippocampus

text: Hippocampus 07:00 repl. 2


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT1 (07:00)

text: Hippocampus

text: Hippocampus 07:00 repl. 1


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT21 (03:00)

text: Hippocampus

text: Hippocampus 03:00 repl. 3


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT21 (03:00)

text: Hippocampus

text: Hippocampus 03:00 repl. 2


text: live

text: Generic

text: Mus musculus

text: Hippocampus

text: ZT21 (03:00)

text: Hippocampus

text: Hippocampus 03:00 repl. 1


text: live

text: Generic

text: Mus musculus

text: Frontal cortex

text: ZT17 (23:00)

text: Frontal cortex

text: Frontal cortex 23:00 repl. 3


text: live

text: Generic

text: Mus musculus

text: Frontal cortex

text: ZT17 (23:00)

text: Frontal cortex

text: Frontal cortex 23:00 repl. 2


text: live

text: Generic

text: Mus musculus

text: Frontal cortex

text: ZT17 (23:00)

text: Frontal cortex

text: Frontal cortex 23:00 repl. 1