characteristic: INSDC center name

text: live

text: MIMAG.host-associated

characteristic: depth

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Spirochaetales bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Spirochaetales bacterium


status: PUBLIC

characteristic: External Id

text: GEOMAR Helmholtz Centre for Ocean Research Kiel

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

tag: attribute

text: SAMN09064949, SAMN09064952, SAMN09064953, SAMN09064955, SAMN09064958, SAMN09064967, SAMN09064968, SAMN09064975, SAMN09064976, SAMN09064978, SAMN09064979, SAMN09197751, SAMN09197752, SAMN09197753

characteristic: derived-from

text: high-quality (>70% completeness and <10% redundancy) MAG binned from co-assembled metagenomic data of 13 Geodia parva specimens and 3 seawater reference samples

characteristic: description

text: marine benthic biome [ENVO:01000024]

text: seamount [ENVO:00000264]|range of seamounts [ENVO:00000550]

text: environmental system determined by an organism [ENVO:01001000]

characteristic: environmental-sample

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

characteristic: host

characteristic: isolate

text: 87 N 61 E

text: sponge metagenome

characteristic: metagenome-source

characteristic: metagenomic

text: Dehalococcoidia bacterium

characteristic: organism

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Dehalococcoidia bacterium

characteristic: title


characteristic: INSDC center name

text: live

text: MIMAG.host-associated

characteristic: depth

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Acidimicrobiales bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Acidimicrobiales bacterium


characteristic: External Id

characteristic: INSDC first public

text: live

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Rhodospirillales bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Rhodospirillales bacterium


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Brevirhabdus sp.

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Brevirhabdus sp.


text: live

text: MIMAG.host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Nitrospinaceae bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Nitrospinaceae bacterium


text: live

text: MIMAG.host-associated

characteristic: derived-from

characteristic: description

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Candidatus Poribacteria bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Candidatus Poribacteria bacterium


text: live

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

characteristic: environmental-sample

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

characteristic: host

text: 87 N 61 E

text: sponge metagenome

text: Anaerolineae bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Anaerolineae bacterium


text: live

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

characteristic: isolate

text: 87 N 61 E

text: sponge metagenome

characteristic: metagenome-source

text: Vicinamibacterales bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Vicinamibacterales bacterium


text: live

text: MIMAG.host-associated

text: (lower-quality) bin from co-assembled metagenomic data of 13 Geodia parva specimens and 3 seawater reference samples

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

characteristic: metagenomic

text: Pseudomonadales bacterium

characteristic: organism

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Pseudomonadales bacterium


text: live

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Thermoanaerobaculia bacterium

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Thermoanaerobaculia bacterium

characteristic: title


characteristic: INSDC center name

text: live

text: MIMAG.host-associated

characteristic: depth

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Dehalococcoidia bacterium

text: metagenomic assembly


characteristic: External Id

characteristic: INSDC first public

text: live

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Vicinamibacterales bacterium

text: metagenomic assembly


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Caldilineaceae bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Caldilineaceae bacterium


text: GEOMAR Helmholtz Centre for Ocean Research Kiel

text: live

text: MIMAG.host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Rhodospirillales bacterium

text: metagenomic assembly


text: live

text: MIMAG.host-associated

text: SAMN09064949, SAMN09064952, SAMN09064953, SAMN09064955, SAMN09064958, SAMN09064967, SAMN09064968, SAMN09064975, SAMN09064976, SAMN09064978, SAMN09064979, SAMN09197751, SAMN09197752, SAMN09197753

characteristic: derived-from

characteristic: description

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Bryobacterales bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Bryobacterales bacterium


text: live

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: seamount [ENVO:00000264]|range of seamounts [ENVO:00000550]

characteristic: environmental-sample

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

characteristic: host

text: 87 N 61 E

text: sponge metagenome

text: Planctomycetaceae bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Planctomycetaceae bacterium


text: live

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: environmental system determined by an organism [ENVO:01001000]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

characteristic: isolate

text: 87 N 61 E

text: sponge metagenome

characteristic: metagenome-source

text: Alphaproteobacteria bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Alphaproteobacteria bacterium


text: live

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

characteristic: metagenomic

text: Nitrosopumilus sp.

characteristic: organism

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Nitrosopumilus sp.


text: live

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Gammaproteobacteria bacterium

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Gammaproteobacteria bacterium

characteristic: title


characteristic: INSDC center name

text: live

text: MIMAG.host-associated

characteristic: depth

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Pirellulaceae bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Pirellulaceae bacterium


characteristic: External Id

characteristic: INSDC first public

text: live

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Caldilineales bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Caldilineales bacterium


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.host-associated

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Halioglobus sp.

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Halioglobus sp.


text: live

text: MIMAG.host-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: Candidatus Poribacteria bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Candidatus Poribacteria bacterium


text: UNIVERSITY OF CALICUT

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: India:Kerala,Kannur,Edaat

text: Mangrove

text: sediment

text: 12.1021 N 75.2253 E

text: soil metagenome


text: UNIVERSITY OF CALICUT

text: live

text: Metagenome or environmental

text: India:Kerala,Kannur,Edaat

text: Mangrove

characteristic: host

text: sediment

text: 12.1021 N 75.2253 E

text: soil metagenome

text: Cultured


Genome sequencing of Gossypium bickii

text: Zhejiang University

text: live

text: Plant

text: seedling

text: China:Zhejiang,hangzhou

text: glanded and glandless seeds

characteristic: isolate

text: Gossypium bickii

text: leaf

characteristic: tissue

text: Plant sample from Gossypium bickii


text: Sant, School of Public Health, San Diego State University

text: live

text: Generic

text: 100 hpf

characteristic: age

text: TCPMOH (50 nM), waterborne

characteristic: exposure

text: Danio rerio

text: Whole eleutherolarvae (100 hpf)

text: AB (wild-type)

characteristic: strain


text: live

text: Generic

text: 100 hpf

text: TCPM (50 nM), waterborne

text: Danio rerio

characteristic: organism

text: Whole eleutherolarvae (100 hpf)

text: AB (wild-type)

characteristic: title


characteristic: INSDC center name

text: live

text: Generic

text: 100 hpf

text: DMSO (0.01% v/v), waterborne

text: Danio rerio

text: Whole eleutherolarvae (100 hpf)

text: AB (wild-type)


name: co-assembly of Geodia parva and seawater metagenomes for binning

characteristic: External Id

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: depth

text: This sample group is the combination of the 14 individual BioSamples: SAMN09064949, SAMN09064952, SAMN09064953, SAMN09064955, SAMN09064958, SAMN09064967, SAMN09064968, SAMN09064975, SAMN09064976, SAMN09064978, SAMN09064979, SAMN09197751, SAMN09197752, SAMN09197753

characteristic: derived-from

text: Metagenomic data from 13 sponge and 3 seawater samples were co-assembled by location and binned. The bins were then de-replicated. The approach is described in detail in https://github.com/bslaby/PS101_MAGanalysis/blob/master/Langseth_Ridge_workflow.md.

characteristic: description

text: marine benthic biome [ENVO:01000024]

text: Arctic Ocean: Langseth Ridge

text: Geodia parva

text: 87 N 61 E

text: sponge metagenome

text: MIMS Environmental/Metagenome sample from sponge metagenome


Ticks Cataloi

text: Institut Pasteur

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: altitude

text: Keywords: GSC:MIxS;MIMS:5.0

text: Danube Delta region

text: Ticks collected on sheep

text: Ticks collected on sheep

text: Romania

text: Rhipicephalus sp.

text: Ticks collected on sheep from Cataloi area, Romania

text: 45.095 N 28.73138888 E

text: tick metagenome

text: Ticks collected on animals

text: 169 ticks

text: MIMS Environmental/Metagenome sample from tick metagenome


name: RNA-seq of Gossypium bickii, Gossypium herbaceum and Gossypium arboreum

text: Zhejiang University

text: live

text: Generic

characteristic: NCBI submission package

text: Gossypium arboreum

characteristic: component organism

text: Gossypium bickii

text: Gossypium herbaceum

text: ovule and seed

text: China:Zhejiang,hangzhou

text: glanded and glandless seeds

characteristic: isolate

text: mixed sample

text: ovule and seed

text: Plant sample from Gossypium bickii, Gossypium herbaceum and Gossypium arboreum


text: Bin Tian, Program in Gene Expression and Regulation, Center for Systems and Computational Biology, The Wistar Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: ecotype

characteristic: library type

text: Arabidopsis thaliana

text: Dark

characteristic: sample treatment

text: Plant under dark condition

text: seedling

characteristic: tissue


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Arabidopsis thaliana

characteristic: organism

text: Light

text: Plant under light condition

text: seedling

characteristic: title


text: Hebei Agricultural University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Plant

characteristic: age

characteristic: cultivar

text: China

text: Chlorella sorokiniana

text: cell

text: transcriptome analysis of Chlorella sorokiniana


text: Medicum, University of Helsinki

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mus musculus

text: Cardiac muscle

characteristic: strain

text: Left ventricular wall from the remote zone

text: MI at postnatal day 7

characteristic: treatment


text: Medicum, University of Helsinki

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: Cardiac muscle

text: SHAM at postnatal day 7


text: Medicum, University of Helsinki

text: live

text: Generic

text: Mus musculus

text: Cardiac muscle

text: MI at postnatal day 1


text: Medicum, University of Helsinki

text: live

text: Generic

text: Mus musculus

text: Cardiac muscle

text: ICR405-2 -miRNA

text: MI at postnatal day 1


text: Medicum, University of Helsinki

text: live

text: Generic

text: Mus musculus

text: Cardiac muscle

text: SHAM at postnatal day 1


text: Medicum, University of Helsinki

text: live

text: Generic

text: Mus musculus

text: Cardiac muscle

text: ICR405-2 -RNA

text: MI at postnatal day 1


text: IGC Core, Salk Institute for biological studies

text: live

text: Generic

characteristic: cell line

text: Melanoma cell line

characteristic: cell type

text: BrafV600E/ Pten-/-/ Cdkn2a-/-

characteristic: genetic background

text: Mus musculus


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Melanoma cell line

text: BrafV600E/ Pten-/-/ Cdkn2a-/-

text: Mus musculus

text: ETC CI inhibitor (Rotenone)


text: live

text: Generic

text: Melanoma cell line

text: BrafV600E/ Pten-/-/ Cdkn2a-/-

text: Mus musculus

characteristic: organism

characteristic: title

text: DMSO


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: YUMM-MCJKO

characteristic: genotype

text: Mus musculus

text: YUMM MCJ KO

text: TCR_YUMM-MCJ-KO TILs


text: live

characteristic: INSDC status

text: Generic

text: YUMM-sgSCR

text: Mus musculus

text: YUMM control

text: TCR_YUMM-sgSCR TILs


text: live

text: Generic

characteristic: NCBI submission model

text: YUMM-MCJKO

text: Mus musculus

text: YUMM MCJ KO

text: RNA_YUMM-MCJ-KO TILs


text: live

text: Generic

characteristic: NCBI submission package

text: YUMM-sgSCR

text: Mus musculus

text: YUMM control

text: RNA_YUMM-sgSCR TILs


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.48 E

text: Chlorella sorokiniana

text: replicate = biological replicate 1

characteristic: replicate

characteristic: time of collection

text: cell

characteristic: tissue

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

characteristic: INSDC secondary accession

text: live

text: Plant

characteristic: SRA accession

text: China:Baoding

text: 38.87 N 115.49 E

text: Chlorella sorokiniana

text: replicate = biological replicate 2

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.50 E

text: Chlorella sorokiniana

text: replicate = biological replicate 3

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.51 E

text: Chlorella sorokiniana

text: replicate = biological replicate 1

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.52 E

text: Chlorella sorokiniana

text: replicate = biological replicate 2

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.53 E

text: Chlorella sorokiniana

text: replicate = biological replicate 3

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.54 E

text: Chlorella sorokiniana

text: replicate = biological replicate 1

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.55 E

text: Chlorella sorokiniana

text: replicate = biological replicate 2

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.56 E

text: Chlorella sorokiniana

text: replicate = biological replicate 3

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.57 E

text: Chlorella sorokiniana

text: replicate = biological replicate 1

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.58 E

text: Chlorella sorokiniana

text: replicate = biological replicate 2

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.59 E

text: Chlorella sorokiniana

text: replicate = biological replicate 3

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.60 E

text: Chlorella sorokiniana

text: replicate = biological replicate 1

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.61 E

text: Chlorella sorokiniana

text: replicate = biological replicate 2

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.62 E

text: Chlorella sorokiniana

text: replicate = biological replicate 3

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.63 E

text: Chlorella sorokiniana

text: replicate = biological replicate 1

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.64 E

text: Chlorella sorokiniana

text: replicate = biological replicate 2

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.65 E

text: Chlorella sorokiniana

text: replicate = biological replicate 3

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.66 E

text: Chlorella sorokiniana

text: replicate = biological replicate 1

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.67 E

text: Chlorella sorokiniana

text: replicate = biological replicate 2

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.68 E

text: Chlorella sorokiniana

text: replicate = biological replicate 3

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.69 E

text: Chlorella sorokiniana

text: replicate = biological replicate 1

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.70 E

text: Chlorella sorokiniana

text: replicate = biological replicate 2

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.71 E

text: Chlorella sorokiniana

text: replicate = biological replicate 3

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.72 E

text: Chlorella sorokiniana

text: replicate = biological replicate 1

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.73 E

text: Chlorella sorokiniana

text: replicate = biological replicate 2

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.74 E

text: Chlorella sorokiniana

text: replicate = biological replicate 3

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.75 E

text: Chlorella sorokiniana

text: replicate = biological replicate 1

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.76 E

text: Chlorella sorokiniana

text: replicate = biological replicate 2

text: cell

text: Plant sample from Chlorella sorokiniana


text: Hebei Agricultural University

text: live

text: Plant

text: China:Baoding

text: 38.87 N 115.77 E

text: Chlorella sorokiniana

text: replicate = biological replicate 3

text: cell

text: Plant sample from Chlorella sorokiniana


text: Pathology, East Carolina University

text: live

text: Generic

text: Postnatal day 3

characteristic: age

text: intraventricular hemorrhage

characteristic: disease state

text: Oryctolagus cuniculus

text: Premature rabbit pups treated with glycerol to induce intraventricular hemorrhage

text: SVZ dissected tissue

text: Deferoxamine Treated (DFN)

characteristic: treatment


characteristic: External Id

text: Pathology, East Carolina University

characteristic: INSDC center name

text: live

text: Generic

text: Postnatal day 3

text: intraventricular hemorrhage

text: Oryctolagus cuniculus

text: SVZ dissected tissue

text: Unrestricted Stem Cell Treated (USCT)


text: The Chinese University of Hong Kong

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:5.0

characteristic: description

text: gut microbiome

text: human intestinal

text: human feces

text: Asian

characteristic: ethnicity

text: China: Hong Kong

text: Homo sapiens

characteristic: host

text: Obese

text: 22.26 N 114.12 E

text: human gut metagenome

characteristic: organism

text: MIMARKS Survey related sample from human gut metagenome

characteristic: title


text: The Chinese University of Hong Kong

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: NCBI submission model

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: gut microbiome

text: human intestinal

text: human feces

text: Asian

text: China: Hong Kong

text: Homo sapiens

text: Healthy

text: 22.26 N 114.12 E

text: human gut metagenome


text: Tongji University

text: live

text: Human

characteristic: NCBI submission package

text: Liver Cancer Research Institute, Zhongshan Hospital, Fudan University.

text: Shanghai

characteristic: isolate

text: Homo sapiens

text: male

characteristic: sex

text: Liver

characteristic: tissue

text: Human sample from Homo sapiens


text: Biotechnology, Crop improvement, ICAR-Indian Institute of Rice Research

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: genotype

text: Oryza sativa Indica Group

text: ICAR - IIRR

text: Panicle


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: ThururBhog

text: Oryza sativa Indica Group

text: ICAR - IIRR

text: Panicle

characteristic: treatment


text: live

text: Generic

text: KolaJoha

text: Oryza sativa Indica Group

text: ICAR - IIRR

text: Panicle


Amana hejiaqingii

text: Zhejiang University

text: live

text: Plant

text: flower

text: China: Hubei

text: hejiaqingii

text: Amana hejiaqingii

text: leaf

text: Plant sample from Amana


characteristic: Bank

text: 1 day_tap water

characteristic: Generations

text: School of Medicine, Tufts University

text: live

text: Microbe, viral or environmental

characteristic: Time

text: WT

text: USA:Boston

text: Legionella pneumophila

text: tap water

characteristic: strain

text: Microbe sample from Legionella pneumophila


text: 50 day_tap water

text: School of Medicine, Tufts University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: WT

text: USA:Boston

text: Legionella pneumophila

characteristic: organism

text: tap water

characteristic: title


text: Chemical Biology, Shanghai Institute of Materia Medica

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: cell line

text: colorectal cancer cells

characteristic: cell type

text: Homo sapiens

text: SW620 cell line, Compound 19-048 1uM repeat 2

text: Compound 19-048 1uM


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: colorectal cancer cells

text: Homo sapiens

text: SW620 cell line, Compound 19-048 1uM repeat 1

text: Compound 19-048 1uM


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: colorectal cancer cells

text: Homo sapiens

text: SW620 cell line, DMSO repeat 2

text: DMSO


text: live

text: Generic

text: colorectal cancer cells

text: Homo sapiens

text: SW620 cell line, DMSO repeat 1

text: DMSO

characteristic: treatment


text: live

text: Generic

text: colorectal cancer cells

text: Homo sapiens

text: SW620 cell line, Celastrol 1uM repeat 2

text: Celastrol 1uM


text: live

text: Generic

text: colorectal cancer cells

text: Homo sapiens

text: SW620 cell line, Celastrol 1uM repeat 1

text: Celastrol 1uM


text: live

text: Generic

text: colorectal cancer cells

text: Homo sapiens

text: HCT116 cell line, Compound 19-048 2uM repeat 2

text: Compound 19-048 2uM


text: live

text: Generic

text: colorectal cancer cells

text: Homo sapiens

text: HCT116 cell line, Compound 19-048 2uM repeat 1

text: Compound 19-048 2uM


text: live

text: Generic

text: colorectal cancer cells

text: Homo sapiens

text: HCT116 cell line, DMSO repeat 2

text: DMSO


text: live

text: Generic

text: colorectal cancer cells

text: Homo sapiens

text: HCT116 cell line, DMSO repeat 1

text: DMSO


text: live

text: Generic

text: colorectal cancer cells

text: Homo sapiens

text: HCT116 cell line, Celastrol 2uM repeat 2

text: Celastrol 2uM


text: live

text: Generic

text: colorectal cancer cells

text: Homo sapiens

text: HCT116 cell line, Celastrol 2uM repeat 1

text: Celastrol 2uM


text: University of Pennsylvania

text: live

text: Generic

text: Apc -/-/Trp53-/-

characteristic: genotype

text: Mus musculus

text: Colon organoid

characteristic: strain background

text: Colon

characteristic: tissue

text: Infected with shControl virus


text: University of Pennsylvania

characteristic: INSDC first public

text: live

text: Generic

text: Apc -/-/Trp53-/-

text: Mus musculus

text: Colon organoid

text: Colon

text: Infected with shNotum virus


text: University of Pennsylvania

characteristic: INSDC last update

text: live

text: Generic

text: Apc -/-

text: Mus musculus

text: Colon organoid

text: Colon

text: Infected with shControl virus


text: University of Pennsylvania

text: live

text: Generic

text: Apc -/-

text: Mus musculus

characteristic: organism

text: Colon organoid

text: Colon

text: Infected with shNotum virus


text: University of Pennsylvania

text: live

text: Generic

text: Apc min

text: Mus musculus

text: tumor

characteristic: strain

text: Colon tumor

text: ApcMin/+ [scRNA-seq]

characteristic: title

text: untreated


text: University of Pennsylvania

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: wild type

text: Mus musculus

text: tumor

text: Colon tumor

text: AOM/DSS [scRNA-seq]

text: 10mg/kg AOM injected once, after one week treated with 2.5%DSS for 5 days and then change to H2O for 2 weeks(this is one cycle), totally 3 cycle.


text: University of Pennsylvania

text: live

text: Generic

characteristic: NCBI submission package

text: wild type

text: Mus musculus

text: tumor

text: Colon tumor

text: APKS [scRNA-seq]

text: Orthotopic injected Apc/Trp53/KrasG12D/Smad4 quadruple-mutant tumor organoids to C57BL/6 mice for 8 weeks


text: University of Pennsylvania

text: live

text: Generic

text: wild type

text: Mus musculus

text: epithelial

text: Colon

text: Normal Colon [scRNA-seq]

text: untreated


characteristic: BioSamples

text: The First Affiliated Hospital of Shenzhen University

text: live

text: Human

characteristic: age

characteristic: description

text: normal diastolic function

characteristic: isolate

text: Homo sapiens

text: male

characteristic: sex

text: Serum

text: Human sample from Homo sapiens


characteristic: External Id

characteristic: INSDC center name

text: live

text: Human

text: normal diastolic function

text: Homo sapiens

text: female

text: Serum

text: Human sample from Homo sapiens


text: live

text: Human

text: Diastolic dysfunction

text: Homo sapiens

text: male

text: Serum

text: Human sample from Homo sapiens


text: live

text: Human

text: Diastolic dysfunction

text: Homo sapiens

text: female

text: Serum

text: Human sample from Homo sapiens


text: Western University

text: live

text: MIMAG.wastewater

text: metagenomic assemble genome of uncharacterized Manganitropus species growing in biofilm formed on GAC filter. Metagenomic samples sequenced on Nanopore MinION.

text: industrial wastewater [ENVO:01000964]

text: wastewater treatment plant [ENVO:00002043]

text: charcoal [ENVO:01000560]

characteristic: environmental-sample

text: Canada: Sarnia oil refinery

text: Carbon granules from GAC filter

text: 42.9745 N 82.4066 W

text: activated carbon metagenome

characteristic: metagenome-source

characteristic: metagenomic

text: Candidatus Manganitrophus sp.

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Candidatus Manganitrophus sp.

type: derived-from


text: Molecular Genetics, Genetics, APHP Hôpital Robert Debré

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Mononucleated cells

characteristic: cell type

text: Healthy postnatal sample

characteristic: disease state

text: Homo sapiens

characteristic: organism

text: Bone Marrow

text: Bone Marrow

characteristic: tissue


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mononucleated cells

text: JMML_Other mutated

characteristic: jmml patients unique identifier

text: Homo sapiens

text: Peripheral blood

text: Peripheral blood

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Mononucleated cells

text: JMML_NRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Mononucleated cells

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Mononucleated cells

text: JMML_KRAS mutated

text: Homo sapiens

text: Peripheral blood

text: Peripheral blood


text: live

text: Generic

text: Mononucleated cells

text: JMML_KRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Mononucleated cells

text: JMML_Other mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Mononucleated cells

text: Healthy prenatal sample

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MEP

text: Healthy postnatal sample

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted GMP

text: Healthy postnatal sample

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CMP

text: Healthy postnatal sample

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MEP

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted GMP

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CMP

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MEP

text: JMML_NRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted GMP

text: JMML_NRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CMP

text: JMML_NRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MEP

text: JMML_Other mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted GMP

text: JMML_Other mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CMP

text: JMML_Other mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MEP

text: JMML_KRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted GMP

text: JMML_KRAS mutated

text: Homo sapiens

text: Peripheral blood

text: Peripheral blood


text: live

text: Generic

text: Sorted CMP

text: JMML_KRAS mutated

text: Homo sapiens

text: Peripheral blood

text: Peripheral blood


text: live

text: Generic

text: Sorted GMP

text: JMML_KRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CMP

text: JMML_KRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MEP

text: JMML_Other mutated

text: Homo sapiens

text: Peripheral blood

text: Peripheral blood


text: live

text: Generic

text: Sorted GMP

text: JMML_Other mutated

text: Homo sapiens

text: Peripheral blood

text: Peripheral blood


text: live

text: Generic

text: Sorted CMP

text: JMML_Other mutated

text: Homo sapiens

text: Peripheral blood

text: Peripheral blood


text: live

text: Generic

text: Sorted MEP

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted GMP

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CMP

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MEP

text: JMML_NRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted GMP

text: JMML_NRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CMP

text: JMML_NRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MEP

text: Healthy prenatal sample

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted GMP

text: Healthy prenatal sample

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CMP

text: Healthy prenatal sample

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MEP

text: Healthy prenatal sample

text: Homo sapiens

text: Liver

text: Liver


text: live

text: Generic

text: Sorted GMP

text: Healthy prenatal sample

text: Homo sapiens

text: Liver

text: Liver


text: live

text: Generic

text: Sorted CMP

text: Healthy prenatal sample

text: Homo sapiens

text: Liver

text: Liver


text: live

text: Generic

text: Sorted CMP

text: Healthy postnatal sample

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MPP

text: Healthy postnatal sample

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CSH

text: Healthy postnatal sample

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MPP

text: JMML_NRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CSH

text: JMML_NRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MPP

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MEP

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted GMP

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CSH

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CMP

text: JMML_PTPN11 mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CSH

text: JMML_KRAS mutated

text: Homo sapiens

text: Peripheral blood

text: Peripheral blood


text: live

text: Generic

text: Sorted MPP

text: JMML_KRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CSH

text: JMML_KRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted CMP

text: JMML_NRAS mutated

text: Homo sapiens

text: Bone Marrow

text: Bone Marrow


text: live

text: Generic

text: Sorted MPP

text: Healthy prenatal sample

text: Homo sapiens

text: Liver

text: Liver


text: live

text: Generic

text: Sorted CSH

text: Healthy prenatal sample

text: Homo sapiens

text: Liver

text: Liver


text: Chongqing Tianyou Dairy Co., Ltd., Chongqing, China

text: live

text: Metagenome or environmental

characteristic: TEM

text: mice

characteristic: host

text: mouse gut metagenome

text: Metagenome or environmental sample from mouse gut metagenome


text: Plant

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: pda|qiutaoxu

characteristic: INSDC center alias

text: pda|qiutaoxu

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: Asian cultivated rice

characteristic: common name

text: Japanica

characteristic: cultivar

text: not collected

characteristic: ecotype

text: not collected

text: not collected

characteristic: isolate

text: Oryza sativa

text: leaf

text: Oryza sativa


text: IBR (CONICET-UNR)

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: red ripe

characteristic: developmental stage

text: hybrid 2 (G x Q)

characteristic: genotype

text: Solanum lycopersicum

characteristic: organism

text: tomato fruit mesocarp

text: fruit mesocarp

characteristic: tissue

text: Third biological replicate of the hybrid G x Q


characteristic: External Id

text: IBR (CONICET-UNR)

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: red ripe

text: hybrid 2 (G x Q)

text: Solanum lycopersicum

text: tomato fruit mesocarp

text: fruit mesocarp

text: Second biological replicate of the hybrid G x Q

characteristic: title


text: IBR (CONICET-UNR)

text: live

text: Generic

text: red ripe

text: hybrid 2 (G x Q)

text: Solanum lycopersicum

text: tomato fruit mesocarp

text: fruit mesocarp

text: First biological replicate of the hybrid G x Q


text: IBR (CONICET-UNR)

text: live

text: Generic

text: red ripe

text: hybrid 1 (Q x G)

text: Solanum lycopersicum

text: tomato fruit mesocarp

text: fruit mesocarp

text: Third biological replicate of the hybrid Q x G


text: IBR (CONICET-UNR)

text: live

text: Generic

text: red ripe

text: hybrid 1 (Q x G)

text: Solanum lycopersicum

text: tomato fruit mesocarp

text: fruit mesocarp

text: Second biological replicate of the hybrid Q x G


text: IBR (CONICET-UNR)

text: live

text: Generic

text: red ripe

text: hybrid 1 (Q x G)

text: Solanum lycopersicum

text: tomato fruit mesocarp

text: fruit mesocarp

text: First biological replicate of the hybrid Q x G


text: IBR (CONICET-UNR)

text: live

text: Generic

text: red ripe

text: parental line G

text: Solanum lycopersicum

text: tomato fruit mesocarp

text: fruit mesocarp

text: Third biological replicate of the parental line G


text: IBR (CONICET-UNR)

text: live

text: Generic

text: red ripe

text: parental line G

text: Solanum lycopersicum

text: tomato fruit mesocarp

text: fruit mesocarp

text: Second biological replicate of the parental line G


text: IBR (CONICET-UNR)

text: live

text: Generic

text: red ripe

text: parental line G

text: Solanum lycopersicum

text: tomato fruit mesocarp

text: fruit mesocarp

text: First biological replicate of the parental line G


text: IBR (CONICET-UNR)

text: live

text: Generic

text: red ripe

text: parental line Q

text: Solanum lycopersicum

text: tomato fruit mesocarp

text: fruit mesocarp

text: Third biological replicate of the parental line Q


text: IBR (CONICET-UNR)

text: live

text: Generic

text: red ripe

text: parental line Q

text: Solanum lycopersicum

text: tomato fruit mesocarp

text: fruit mesocarp

text: Second biological replicate of the parental line Q


text: IBR (CONICET-UNR)

text: live

text: Generic

text: red ripe

text: parental line Q

text: Solanum lycopersicum

text: tomato fruit mesocarp

text: fruit mesocarp

text: First biological replicate of the parental line Q


text: Virginia Tech

text: live

text: Metagenome or environmental

characteristic: description

text: USA

text: Water Heater microbiome_1

characteristic: host

text: Water Heater Hot Water_1

text: 37.23 N 80.41 W

text: freshwater metagenome

text: Metagenome or environmental sample from freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_2

text: Water Heater Hot Water_2

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_3

text: Water Heater Hot Water_3

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_4

text: Water Heater Hot Water_4

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_5

text: Water Heater Hot Water_5

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_6

text: Water Heater Hot Water_6

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_7

text: Water Heater Hot Water_7

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_8

text: Water Heater Hot Water_8

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_9

text: Water Heater Hot Water_9

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_10

text: Water Heater Hot Water_10

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_11

text: Water Heater Hot Water_11

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_12

text: Water Heater Hot Water_12

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_13

text: Water Heater Hot Water_13

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_14

text: Water Heater Hot Water_14

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_15

text: Water Heater Hot Water_15

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_16

text: Water Heater Hot Water_16

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_17

text: Water Heater Hot Water_17

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_18

text: Water Heater Hot Water_18

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_19

text: Water Heater Hot Water_19

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_20

text: Water Heater Hot Water_20

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_21

text: Water Heater Hot Water_21

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_22

text: Water Heater Hot Water_22

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_23

text: Water Heater Hot Water_23

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_24

text: Water Heater Hot Water_24

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_25

text: Water Heater Hot Water_25

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_26

text: Water Heater Hot Water_26

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_27

text: Water Heater Hot Water_27

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_28

text: Water Heater Hot Water_28

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_29

text: Water Heater Hot Water_29

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_30

text: Water Heater Hot Water_30

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_31

text: Water Heater Hot Water_31

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_32

text: Water Heater Hot Water_32

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_33

text: Water Heater Hot Water_33

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_34

text: Water Heater Hot Water_34

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_35

text: Water Heater Hot Water_35

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_36

text: Water Heater Hot Water_36

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_37

text: Water Heater Hot Water_37

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_38

text: Water Heater Hot Water_38

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_39

text: Water Heater Hot Water_39

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_40

text: Water Heater Hot Water_40

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_41

text: Water Heater Hot Water_41

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_42

text: Water Heater Hot Water_42

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_43

text: Water Heater Hot Water_43

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_44

text: Water Heater Hot Water_44

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_45

text: Water Heater Hot Water_45

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_46

text: Water Heater Hot Water_46

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_47

text: Water Heater Hot Water_47

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_48

text: Water Heater Hot Water_48

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_49

text: Water Heater Hot Water_49

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_50

text: Water Heater Hot Water_50

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_51

text: Water Heater Hot Water_51

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_52

text: Water Heater Hot Water_52

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_53

text: Water Heater Hot Water_53

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_54

text: Water Heater Hot Water_54

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Virginia Tech

text: live

text: Metagenome or environmental

text: USA

text: Water Heater microbiome_55

text: Water Heater Hot Water_55

text: 37.23 N 80.41 W

text: freshwater metagenome


WH1_Al Anode_Biofilm

text: Virginia Tech

text: live

text: Metagenome or environmental

text: WH1_Al Anode_Biofilm

text: USA

text: Water Heater microbiome_56

text: Water Heater Hot Water_56

text: 37.23 N 80.41 W

text: freshwater metagenome


WH3_Al Anode_Biofilm

text: Virginia Tech

text: live

text: Metagenome or environmental

text: WH3_Al Anode_Biofilm

text: USA

text: Water Heater microbiome_58

text: Water Heater Hot Water_58

text: 37.23 N 80.41 W

text: freshwater metagenome


WH4_Al Anode_Biofilm

text: Virginia Tech

text: live

text: Metagenome or environmental

text: WH4_Al Anode_Biofilm

text: USA

text: Water Heater microbiome_59

text: Water Heater Hot Water_59

text: 37.23 N 80.41 W

text: freshwater metagenome


WH1_Mg Anode_Biofilm

text: Virginia Tech

text: live

text: Metagenome or environmental

text: WH1_Mg Anode_Biofilm

text: USA

text: Water Heater microbiome_60

text: Water Heater Hot Water_60

text: 37.23 N 80.41 W

text: freshwater metagenome


WH2_Mg Anode_Biofilm

text: Virginia Tech

text: live

text: Metagenome or environmental

text: WH2_Mg Anode_Biofilm

text: USA

text: Water Heater microbiome_61

text: Water Heater Hot Water_61

text: 37.23 N 80.41 W

text: freshwater metagenome


WH3_Mg Anode_Biofilm

text: Virginia Tech

text: live

text: Metagenome or environmental

text: WH3_Mg Anode_Biofilm

text: USA

text: Water Heater microbiome_62

text: Water Heater Hot Water_62

text: 37.23 N 80.41 W

text: freshwater metagenome


WH4_Mg Anode_Biofilm

text: Virginia Tech

text: live

text: Metagenome or environmental

text: WH4_Mg Anode_Biofilm

text: USA

text: Water Heater microbiome_63

text: Water Heater Hot Water_63

text: 37.23 N 80.41 W

text: freshwater metagenome


WH1_Recirc Loop_Biofilm

text: Virginia Tech

text: live

text: Metagenome or environmental

text: WH1_Recirc Loop_Biofilm

text: USA

text: Water Heater microbiome_64

text: Water Heater Hot Water_64

text: 37.23 N 80.41 W

text: freshwater metagenome


WH2_Recirc Loop_Biofilm

text: Virginia Tech

text: live

text: Metagenome or environmental

text: WH2_Recirc Loop_Biofilm

text: USA

text: Water Heater microbiome_65

text: Water Heater Hot Water_65

text: 37.23 N 80.41 W

text: freshwater metagenome


WH3_Recirc Loop_Biofilm

text: Virginia Tech

text: live

text: Metagenome or environmental

text: WH3_Recirc Loop_Biofilm

text: USA

text: Water Heater microbiome_66

text: Water Heater Hot Water_66

text: 37.23 N 80.41 W

text: freshwater metagenome


WH4_Recirc Loop_Biofilm

text: Virginia Tech

text: live

text: Metagenome or environmental

text: WH4_Recirc Loop_Biofilm

text: USA

text: Water Heater microbiome_67

text: Water Heater Hot Water_67

text: 37.23 N 80.41 W

text: freshwater metagenome


Negative Control_w/blank filter

text: Virginia Tech

text: live

text: Metagenome or environmental

text: Negative control

text: USA

text: Negative control_rep1

text: Negative control_rep2

text: 37.23 N 80.41 W

text: metagenome

text: Metagenome or environmental sample from metagenome


Positive Control_Low

text: Virginia Tech

text: live

text: Metagenome or environmental

text: Listeria monocytogenes; Pseudomonas aeruginosa; Bacillus subtilis; Saccharomyces cerevisiae; Escherichia coli; Salmonella enterica; Lactobacillus fermentum; Enterococcus faecalis; Cryptococcus neoformans; Staphylococcus aureus (Low concentration)

text: USA

text: Positive control_1

text: Positive control_a

text: 37.23 N 80.41 W

text: synthetic metagenome

text: Metagenome or environmental sample from synthetic metagenome


Positive Control_High

text: Virginia Tech

text: live

text: Metagenome or environmental

text: Listeria monocytogenes; Pseudomonas aeruginosa; Bacillus subtilis; Saccharomyces cerevisiae; Escherichia coli; Salmonella enterica; Lactobacillus fermentum; Enterococcus faecalis; Cryptococcus neoformans; Staphylococcus aureus (High concentration)

text: USA

text: Positive control_2

text: Positive control_b

text: 37.23 N 80.41 W

text: synthetic metagenome


Spiked Sample_Low

text: Virginia Tech

text: live

text: Metagenome or environmental

text: Spiked Sample_Low

text: USA

text: Water Heater microbiome; Positive control_1

text: Water Heater microbiome; Positive control_a

text: 37.23 N 80.41 W

text: freshwater metagenome


Spiked Sample_Medium

text: Virginia Tech

text: live

text: Metagenome or environmental

text: Spiked Sample_Medium

text: USA

text: Water Heater microbiome; Positive control_2

text: Water Heater microbiome; Positive control_b

text: 37.23 N 80.41 W

text: freshwater metagenome


Spiked Sample_High

text: Virginia Tech

text: live

text: Metagenome or environmental

text: Spiked Sample_High

text: USA

text: Water Heater microbiome; Positive control_3

text: Water Heater microbiome; Positive control_c

text: 37.23 N 80.41 W

text: freshwater metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

characteristic: depth

text: nirK

characteristic: elev

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY721-CK1

characteristic: isolate

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome

text: MIMS Environmental/Metagenome sample from soil metagenome


text: Sichuan Agricultural University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY722-CK2

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY723-CK3

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY724-ys1

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome

characteristic: organism


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY725-ys2

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY726-ys3

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY727-97

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY728-98

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY729-99

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY730-100

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY731-101

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY732-102

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY733-103

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY734-104

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY735-105

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY736-106

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY737-107

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY738-108

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY739-109

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY740-110

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY741-111

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY742-112

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY743-113

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY744-114

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY745-115

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY746-116

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY747-117

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY748-118

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY749-119

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY750-120

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 1-4-YD1

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 2-4-YD2

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 3-4-YD3

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 4-4-YM1

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 5-4-YM2

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirK

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 6-4-YM3

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-CK1

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-CK2

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-CK3

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-ys1

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-ys2

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-ys3

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-97

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-98

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-99

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-100

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-101

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-102

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-103

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-104

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-105

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-106

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-107

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-108

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-109

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-110

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-111

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-112

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-113

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-114

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-115

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-116

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-117

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-118

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-119

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement DY-120

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 1-YD1

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 2-YD2

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 3-YD3

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 4-YM1

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 5-YM2

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Sichuan Agricultural University

text: live

text: MIMS.me

text: nirS

text: not collected

text: China:Sichuan Agricultural University

text: soil sample of pot expirement 6-YM3

text: the hills of paddy field

text: 30.70 N 103.86 E

text: soil metagenome


text: Institute of Crops and Nuclear Technology Utilization

text: live

text: Plant

text: 2 weeks

characteristic: age

text: R replicate 1

text: Aluminum resistant

characteristic: ecotype

text: Olea europaea

text: replicate = biological replicate 1

characteristic: replicate

text: Root tips

characteristic: tissue

text: Plant sample from Olea europaea

text: 0 µM Al3+ (pH = 7.0)

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Plant

text: 2 weeks

text: R replicate 2

characteristic: description

text: Aluminum resistant

text: Olea europaea

text: replicate = biological replicate 2

text: Root tips

text: Plant sample from Olea europaea

characteristic: title

text: 0 µM Al3+ (pH = 7.0)


characteristic: INSDC last update

text: live

text: Plant

text: 2 weeks

text: R replicate 3

text: Aluminum resistant

text: Olea europaea

text: replicate = biological replicate 3

text: Root tips

text: Plant sample from Olea europaea

text: 0 µM Al3+ (pH = 7.0)


characteristic: INSDC secondary accession

text: live

text: Plant

text: 2 weeks

text: RT replicate 1

text: Aluminum resistant

text: Olea europaea

text: replicate = biological replicate 1

text: Root tips

text: Plant sample from Olea europaea

text: 50 µM Al3+ (pH = 5.0)


text: live

characteristic: INSDC status

text: Plant

text: 2 weeks

text: RT replicate 2

text: Aluminum resistant

text: Olea europaea

text: replicate = biological replicate 2

text: Root tips

text: Plant sample from Olea europaea

text: 50 µM Al3+ (pH = 5.0)


text: live

text: Plant

characteristic: NCBI submission model

text: 2 weeks

text: RT replicate 3

text: Aluminum resistant

text: Olea europaea

text: replicate = biological replicate 3

text: Root tips

text: Plant sample from Olea europaea

text: 50 µM Al3+ (pH = 5.0)


text: live

text: Plant

characteristic: NCBI submission package

text: 2 weeks

text: S replicate 1

text: Aluminum sensitive

text: Olea europaea

text: replicate = biological replicate 1

text: Root tips

text: Plant sample from Olea europaea

text: 0 µM Al3+ (pH = 7.0)


text: live

text: Plant

characteristic: SRA accession

text: 2 weeks

text: S replicate 2

text: Aluminum sensitive

text: Olea europaea

text: replicate = biological replicate 2

text: Root tips

text: Plant sample from Olea europaea

text: 0 µM Al3+ (pH = 7.0)


text: live

text: Plant

text: 2 weeks

text: S replicate 3

text: Aluminum sensitive

text: Olea europaea

characteristic: organism

text: replicate = biological replicate 3

text: Root tips

text: Plant sample from Olea europaea

text: 0 µM Al3+ (pH = 7.0)


text: live

text: Plant

text: 2 weeks

characteristic: age

text: ST replicate 1

text: Aluminum sensitive

text: Olea europaea

text: replicate = biological replicate 1

text: Root tips

text: Plant sample from Olea europaea

text: 50 µM Al3+ (pH = 5.0)


text: live

text: Plant

text: 2 weeks

text: ST replicate 2

text: Aluminum sensitive

characteristic: ecotype

text: Olea europaea

text: replicate = biological replicate 2

text: Root tips

text: Plant sample from Olea europaea

text: 50 µM Al3+ (pH = 5.0)


text: live

text: Plant

text: 2 weeks

text: ST replicate 3

text: Aluminum sensitive

text: Olea europaea

text: replicate = biological replicate 3

characteristic: replicate

text: Root tips

text: Plant sample from Olea europaea

text: 50 µM Al3+ (pH = 5.0)


text: Duisburg-Essen University

text: live

text: MIMAG.miscellaneous

text: Keywords: GSC:MIxS;MIMAG:5.0

characteristic: environmental-sample

text: Hungary:Siklos

characteristic: isolate

text: xylene contaminated groundwater

text: 45.85 N 18.29 E

text: groundwater metagenome

characteristic: metagenome-source

characteristic: metagenomic

text: Comamonadaceae bacterium

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Comamonadaceae bacterium


characteristic: External Id

text: Duisburg-Essen University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIMAG.miscellaneous

text: Keywords: GSC:MIxS;MIMAG:5.0

characteristic: description

text: Hungary:Siklos

text: xylene contaminated groundwater

text: 45.85 N 18.29 E

text: groundwater metagenome

text: Azovibrio restrictus

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Azovibrio restrictus


text: Duisburg-Essen University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.miscellaneous

text: Keywords: GSC:MIxS;MIMAG:5.0

text: Hungary:Siklos

text: xylene contaminated groundwater

text: 45.85 N 18.29 E

text: groundwater metagenome

text: Chitinophagaceae bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Chitinophagaceae bacterium

characteristic: title


text: Duisburg-Essen University

text: live

text: MIMAG.miscellaneous

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMAG:5.0

text: Hungary:Siklos

text: xylene contaminated groundwater

text: 45.85 N 18.29 E

text: groundwater metagenome

text: Chitinophagales bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Chitinophagales bacterium


text: Duisburg-Essen University

text: live

text: MIMAG.miscellaneous

text: Keywords: GSC:MIxS;MIMAG:5.0

text: Hungary:Siklos

text: xylene contaminated groundwater

text: 45.85 N 18.29 E

text: groundwater metagenome

text: Ferrovibrio sp.

characteristic: organism

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Ferrovibrio sp.


text: Duisburg-Essen University

text: live

text: MIMAG.miscellaneous

text: Keywords: GSC:MIxS;MIMAG:5.0

text: Hungary:Siklos

text: xylene contaminated groundwater

text: 45.85 N 18.29 E

text: groundwater metagenome

text: Pseudolabrys sp.

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Pseudolabrys sp.


text: Duisburg-Essen University

text: live

text: MIMAG.miscellaneous

text: Keywords: GSC:MIxS;MIMAG:5.0

text: Hungary:Siklos

text: xylene contaminated groundwater

text: 45.85 N 18.29 E

text: groundwater metagenome

text: Pseudomonas sp.

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Pseudomonas sp.


text: Duisburg-Essen University

text: live

text: MIMAG.miscellaneous

text: Keywords: GSC:MIxS;MIMAG:5.0

text: Hungary:Siklos

text: xylene contaminated groundwater

text: 45.85 N 18.29 E

text: groundwater metagenome

text: Hyphomicrobiales bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Hyphomicrobiales bacterium


text: Duisburg-Essen University

text: live

text: MIMAG.miscellaneous

text: Keywords: GSC:MIxS;MIMAG:5.0

text: Hungary:Siklos

text: xylene contaminated groundwater

text: 45.85 N 18.29 E

text: groundwater metagenome

text: Rugosibacter sp.

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Rugosibacter sp.


text: Duisburg-Essen University

text: live

text: MIMAG.miscellaneous

text: Keywords: GSC:MIxS;MIMAG:5.0

text: Hungary:Siklos

text: xylene contaminated groundwater

text: 45.85 N 18.29 E

text: groundwater metagenome

text: Variovorax sp.

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Variovorax sp.


text: Johns Hopkins University

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: A library of single-codon substitutions in NDM-1 was constructed using inverse PCR. The library was transformed into NEB 5-alpha F'Iq cells. We plasmid prepped uninduced, exponentially-growing cultures of the library mixed with wildtype NDM-1 and determined the allele frequencies at the start of the growth experiment as our generation 0, replica 1 sample. Data for codons 1-271 was used from these files. This was used as Replica 1 for regions 1 (codons 1-90), 2 (codons 91-180), and 3 (codons 181-271).

characteristic: generation

text: USA: Maryland

text: Escherichia coli

text: sequencing run 1

text: cell culture

text: NEB 5-alpha F'Iq

characteristic: strain

characteristic: temp

text: DMS of NEB 5-alpha F'Iq: Single-codon substitutions in NDM-1, sequencing run 1, generation 0


text: Johns Hopkins University

text: live

text: Microbe, viral or environmental

text: A library of single-codon substitutions in NDM-1 was constructed using inverse PCR. The library was transformed into NEB 5-alpha F'Iq cells. We diluted uninduced, exponentially-growing cultures of the libraries mixed with wildtype NDM-1 into LB media containing IPTG. Cultures were allowed to grow for ~10 generations at 37°C with a 32-fold dilution after ~5 generations of growth. We plasmid prepped and determined the allele frequencies of the generation 10, replica 1 sample using deep sequencing. Data for codons 1-271 was used from these files. This was used as Replica 1 for regions 1 (codons 1-90), 2 (codons 91-180), and 3 (codons 181-271).

text: USA: Maryland

text: Escherichia coli

text: sequencing run 1

characteristic: replicate

text: cell culture

text: NEB 5-alpha F'Iq

text: DMS of NEB 5-alpha F'Iq: Single-codon substitutions in NDM-1, sequencing run 1, generation 10


text: Johns Hopkins University

text: live

text: Microbe, viral or environmental

text: A library of single-codon substitutions in NDM-1 was constructed using inverse PCR. The library was transformed into NEB 5-alpha F'Iq cells. We plasmid prepped uninduced, exponentially-growing cultures of the library mixed with wildtype NDM-1 and determined the allele frequencies at the start of the growth experiment as our generation 0, replica 2 sample. Data for codons 1-271 was used from these files. This was used as Replica 2 for regions 1 (codons 1-90), 2 (codons 91-180), and 3 (codons 181-271).

text: USA: Maryland

text: Escherichia coli

text: sequencing run 2

text: cell culture

text: NEB 5-alpha F'Iq

text: DMS of NEB 5-alpha F'Iq: Single-codon substitutions in NDM-1, sequencing run 2, generation 0


text: Johns Hopkins University

text: live

text: Microbe, viral or environmental

text: A library of single-codon substitutions in NDM-1 was constructed using inverse PCR. The library was transformed into NEB 5-alpha F'Iq cells. We diluted uninduced, exponentially-growing cultures of the libraries mixed with wildtype NDM-1 into LB media containing IPTG. Cultures were allowed to grow for ~10 generations at 37°C with a 32-fold dilution after ~5 generations of growth. We plasmid prepped and determined the allele frequencies of the generation 10, replica 2 sample using deep sequencing. Data for codons 1-271 was used from these files. This was used as Replica 2 for regions 1 (codons 1-90), 2 (codons 91-180), and 3 (codons 181-271).

text: USA: Maryland

text: Escherichia coli

text: sequencing run 2

text: cell culture

text: NEB 5-alpha F'Iq

text: DMS of NEB 5-alpha F'Iq: Single-codon substitutions in NDM-1, sequencing run 2, generation 10


text: Johns Hopkins University

text: live

text: Microbe, viral or environmental

text: A library of single-codon substitutions in CAT-I was constructed using inverse PCR. The library was transformed into NEB 5-alpha F'Iq cells. We plasmid prepped uninduced, exponentially-growing cultures of the library mixed with wildtype CAT-I and determined the allele frequencies at the start of the growth experiment as our generation 0, replica 1 sample. Data for codons 1-220 was used from these files. This was used as Replica 1 for regions 1 (codons 1-73), 2 (codons 74-146), and 3 (codons 147-220).

text: USA: Maryland

text: Escherichia coli

text: sequencing run 3

text: cell culture

text: NEB 5-alpha F'Iq

text: DMS of NEB 5-alpha F'Iq: Single-codon substitutions in CAT-I, sequencing run 3, generation 0


text: Johns Hopkins University

text: live

text: Microbe, viral or environmental

text: A library of single-codon substitutions in CAT-I was constructed using inverse PCR. The library was transformed into NEB 5-alpha F'Iq cells. We diluted uninduced, exponentially-growing cultures of the libraries mixed with wildtype CAT-I into LB media containing IPTG. Cultures were allowed to grow for ~10 generations at 37°C with a 32-fold dilution after ~5 generations of growth. We plasmid prepped and determined the allele frequencies of the generation 10, replica 1 sample using deep sequencing. Data for codons 1-220 was used from these files. This was used as Replica 1 for regions 1 (codons 1-73), 2 (codons 74-146), and 3 (codons 147-220).

text: USA: Maryland

text: Escherichia coli

text: sequencing run 3

text: cell culture

text: NEB 5-alpha F'Iq

text: DMS of NEB 5-alpha F'Iq: Single-codon substitutions in CAT-I, sequencing run 3, generation 10


text: Johns Hopkins University

text: live

text: Microbe, viral or environmental

text: A library of single-codon substitutions in CAT-I was constructed using inverse PCR. The library was transformed into NEB 5-alpha F'Iq cells. We plasmid prepped uninduced, exponentially-growing cultures of the library mixed with wildtype CAT-I and determined the allele frequencies at the start of the growth experiment as our generation 0, replica 2 sample. Data for codons 1-220 was used from these files. This was used as Replica 2 for regions 1 (codons 1-73), 2 (codons 74-146), and 3 (codons 147-220).

text: USA: Maryland

text: Escherichia coli

text: sequencing run 4

text: cell culture

text: NEB 5-alpha F'Iq

text: DMS of NEB 5-alpha F'Iq: Single-codon substitutions in CAT-I, sequencing run 4, generation 0


text: Johns Hopkins University

text: live

text: Microbe, viral or environmental

text: A library of single-codon substitutions in CAT-I was constructed using inverse PCR. The library was transformed into NEB 5-alpha F'Iq cells. We diluted uninduced, exponentially-growing cultures of the libraries mixed with wildtype CAT-I into LB media containing IPTG. Cultures were allowed to grow for ~10 generations at 37°C with a 32-fold dilution after ~5 generations of growth. We plasmid prepped and determined the allele frequencies of the generation 10, replica 2 sample using deep sequencing. Data for codons 1-220 was used from these files. This was used as Replica 2 for regions 1 (codons 1-73), 2 (codons 74-146), and 3 (codons 147-220).

text: USA: Maryland

text: Escherichia coli

text: sequencing run 4

text: cell culture

text: NEB 5-alpha F'Iq

text: DMS of NEB 5-alpha F'Iq: Single-codon substitutions in CAT-I, sequencing run 4, generation 10


text: Johns Hopkins University

text: live

text: Microbe, viral or environmental

text: A library of single-codon substitutions in AadB was constructed using inverse PCR. The library was transformed into NEB 5-alpha F'Iq cells. We plasmid prepped uninduced, exponentially-growing cultures of the library mixed with wildtype AadB and determined the allele frequencies at the start of the growth experiment as our generation 0, replica 1 sample. Data for codons 1-178 was used from these files. This was used as Replica 1 for regions 1 (codons 1-89) and 2 (codons 90-178).

text: USA: Maryland

text: Escherichia coli

text: sequencing run 5

text: cell culture

text: NEB 5-alpha F'Iq

text: DMS of NEB 5-alpha F'Iq: Single-codon substitutions in AadB, sequencing run 5, generation 0


text: Johns Hopkins University

text: live

text: Microbe, viral or environmental

text: A library of single-codon substitutions in AadB was constructed using inverse PCR. The library was transformed into NEB 5-alpha F'Iq cells. We diluted uninduced, exponentially-growing cultures of the libraries mixed with wildtype AadB into LB media containing IPTG. Cultures were allowed to grow for ~10 generations at 37°C with a 32-fold dilution after ~5 generations of growth. We plasmid prepped and determined the allele frequencies of the generation 10, replica 1 sample using deep sequencing. Data for codons 1-178 was used from these files. This was used as Replica 1 for regions 1 (codons 1-89) and 2 (codons 90-178).

text: USA: Maryland

text: Escherichia coli

text: sequencing run 5

text: cell culture

text: NEB 5-alpha F'Iq

text: DMS of NEB 5-alpha F'Iq: Single-codon substitutions in AadB, sequencing run 5, generation 10


text: Johns Hopkins University

text: live

text: Microbe, viral or environmental

text: A library of single-codon substitutions in AadB was constructed using inverse PCR. The library was transformed into NEB 5-alpha F'Iq cells. We plasmid prepped uninduced, exponentially-growing cultures of the library mixed with wildtype AadB and determined the allele frequencies at the start of the growth experiment as our generation 0, replica 2 sample. Data for codons 1-178 was used from these files. This was used as Replica 2 for regions 1 (codons 1-89) and 2 (codons 90-178).

text: USA: Maryland

text: Escherichia coli

text: sequencing run 6

text: cell culture

text: NEB 5-alpha F'Iq

text: DMS of NEB 5-alpha F'Iq: Single-codon substitutions in AadB, sequencing run 6, generation 0