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tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

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tag: Namespace:UNIVERSITY OF COPENHAGEN

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text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC

characteristic: adapters

characteristic: collection date

text: NTM caecum content

characteristic: common name

text: main associated run/experiment: ERR9612718/ERX9162941, merged from ERR4303137/ERX4251846 and ERR6785290/ERX6409070 (linked to this sample as well); Chicken meta genome data from Caecum content; animal CB03.16 from cage CB03 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

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characteristic: host common name

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unit: °C

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text: chicken gut metagenome

characteristic: organism

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text: HoloFood Chicken -- None targeted metabolomic

characteristic: project name

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characteristic: sample volume or weight for DNA extraction

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type: BIOGENIC AMINES

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT

characteristic: adapters

characteristic: collection date

text: chicken MAG catalogue data from Caecum content; animal CA01.10 from cage CA01 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - MAG Catalogue from Caecum content

text: Shield

text: E-matrix 2ml

text: UCPH

value: Experiment

value: metagenomics

value: Sequencing company

value: BGI

value: Organism

value: Chicken

value: Index PCR cycles


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: chicken MAG catalogue data from Caecum content; animal CA02.14 from cage CA02 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: female

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

characteristic: organism

text: HoloFood

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

characteristic: sequencing method

characteristic: title

characteristic: trial length

characteristic: trial timepoint

value: Sample code

value: Body site

value: caecum content


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: collection date

text: chicken MAG catalogue data from Caecum content; animal CA03.14 from cage CA03 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: Shield

text: E-matrix 2ml

text: UCPH


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: chicken MAG catalogue data from Caecum content; animal CA06.05 from cage CA06 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Probiotic

text: Gallus gallus

text: male

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

characteristic: organism

text: HoloFood

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

characteristic: sequencing method

characteristic: title

characteristic: trial length

characteristic: trial timepoint

value: Lab Process ID


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: collection date

text: chicken MAG catalogue data from Caecum content; animal CA06.13 from cage CA06 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: Shield

text: E-matrix 2ml

text: UCPH

value: UCPH


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: chicken MAG catalogue data from Caecum content; animal CA06.15 from cage CA06 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Probiotic

text: Gallus gallus

text: male

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

characteristic: organism

text: HoloFood

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

characteristic: sequencing method

characteristic: title

characteristic: trial length

characteristic: trial timepoint

value: Raw sequence name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: collection date

text: chicken MAG catalogue data from Caecum content; animal CA08.08 from cage CA08 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: Shield

text: E-matrix 2ml

text: UCPH

value: Pool


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: chicken MAG catalogue data from Caecum content; animal CA08.16 from cage CA08 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: male

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

characteristic: organism

text: HoloFood

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

characteristic: sequencing method

characteristic: title

characteristic: trial length

characteristic: trial timepoint

value: ng used for library build


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: collection date

text: chicken MAG catalogue data from Caecum content; animal CA10.12 from cage CA10 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: Shield

text: E-matrix 2ml

text: UCPH

value: Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: chicken MAG catalogue data from Caecum content; animal CA13.03 from cage CA13 with treatment CE

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Cobb

text: Chicken

text: Prebiotic

text: Gallus gallus

text: male

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

characteristic: organism

text: HoloFood

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

characteristic: sequencing method

characteristic: title

characteristic: trial length

characteristic: trial timepoint

value: HoloFood

value: too low


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: collection date

text: chicken MAG catalogue data from Caecum content; animal CA17.02 from cage CA17 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: Shield

text: E-matrix 2ml

text: UCPH

value: Experiment

value: metagenomics


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: chicken MAG catalogue data from Caecum content; animal CA17.14 from cage CA17 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: male

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

characteristic: organism

text: HoloFood

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

characteristic: sequencing method

characteristic: title

characteristic: trial length

characteristic: trial timepoint

value: Sequencing company

value: BGI


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: collection date

text: chicken MAG catalogue data from Caecum content; animal CA19.13 from cage CA19 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Ross

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: Shield

text: E-matrix 2ml

text: UCPH

value: Organism

value: Chicken


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: chicken MAG catalogue data from Caecum content; animal CA19.18 from cage CA19 with treatment CO

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Probiotic

text: Gallus gallus

text: female

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

characteristic: organism

text: HoloFood

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

characteristic: sequencing method

characteristic: title

characteristic: trial length

characteristic: trial timepoint

value: Sample code

value: Index PCR cycles


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: collection date

text: chicken MAG catalogue data from Caecum content; animal CA20.10 from cage CA20 with treatment CO

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Probiotic

characteristic: host diet treatment

text: Gallus gallus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: Shield

text: E-matrix 2ml

text: UCPH

value: Body site

value: caecum content


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT

characteristic: adapters

text: chicken MAG catalogue data from Caecum content; animal CA21.09 from cage CA21 with treatment CE

text: Spain

text: El Morell; Tarragona

text: Caecum content

text: Ross

text: Chicken

text: Prebiotic

text: Gallus gallus

text: male

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: chicken gut metagenome

characteristic: organism

text: HoloFood

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: E-matrix 2ml

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

characteristic: sequencing method

characteristic: title

characteristic: trial length

characteristic: trial timepoint

value: Lab Process ID

value: UCPH


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Gallus gallus

characteristic: Organism

characteristic: SRA accession

characteristic: collection date

text: chicken MAG catalogue data from Caecum content; animal CA22.12 from cage CA22 with treatment CC

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: El Morell; Tarragona

characteristic: geographic location (region and locality)

text: Caecum content

characteristic: host body site

text: Cobb

characteristic: host breed

text: Chicken

characteristic: host common name

text: Control

characteristic: host diet treatment

text: Gallus gallus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

text: D-rex protocol

text: chicken gut metagenome

text: HoloFood

characteristic: project

text: HoloFood Chicken - MAG Catalogue from Caecum content

text: Shield

text: E-matrix 2ml

text: UCPH

value: Pool

value: Raw sequence name