status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center alias

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF COPENHAGEN

characteristic: Submitter Id

text: AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT

characteristic: adapters

characteristic: collection date

text: Salmon metagenomic DNA data from Distal gut content; animal SA01.05 from tank SA01 with treatment Tiger

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dønna; Nordland county

characteristic: geographic location (region and locality)

text: Distal gut content

characteristic: host body site

text: Atlantic salmon

characteristic: host common name

text: Fermented algae meal (added in in oil coating)

characteristic: host diet

text: Tiger: SA Control

characteristic: host diet treatment

unit: % mass

characteristic: host diet treatment concentration

text: Wounded:+

characteristic: host disease status

unit: g

characteristic: host gutted mass

unit: cm

characteristic: host length

text: Salmo salar

characteristic: host scientific name

text: LetSea Tank: Tiger

characteristic: host storage container

characteristic: host storage container pH

unit: °C

characteristic: host storage container temperature

characteristic: host subject id

characteristic: host taxid

characteristic: host total mass

text: D-rex protocol

characteristic: nucleic acid extraction

text: fish gut metagenome

characteristic: organism

text: HoloFood

characteristic: project

text: HoloFood Salmon - Metagenomic DNA

characteristic: project name

characteristic: reference host genome for decontamination

text: Shield

characteristic: sample storage buffer

text: 2ml E-matrix

characteristic: sample storage container

text: UCPH

characteristic: sample storage location

characteristic: sample storage temperature

unit: mL

characteristic: sample volume or weight for DNA extraction

text: fish gut metagenome

characteristic: sequencing method

characteristic: title

unit: day

characteristic: trial timepoint

type: EXTERNAL LINKS

type: SAMPLE

value: Omics

value: Metagenomics

value: UCPH

value: Raw seq. name

value: Sequencing company

value: BGI

value: Sample code

value: Pool


characteristic: External Id

text: Baylor College of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Newbler v. 1.1.03.24

characteristic: assembly

text: terrestrial biome [ENVO:00000446]

characteristic: biome

text: not determined

characteristic: collection date

characteristic: culture-collection

text: Lactobacillus plantarum ATCC 14917

characteristic: description

characteristic: estimated size

text: Homo sapiens-associated habitat [ENVO:00009003]

characteristic: feature

text: Level 3: Improved-High-Quality Draft46.14x;36

characteristic: finishing strategy (depth of coverage)

text: not determined

characteristic: geo loc name

text: not determined

text: not determined

characteristic: lat lon

text: biological product [ENVO:02000043]

characteristic: material

text: not determined

characteristic: misc_param: HMP body site

characteristic: misc_param: HMP supersite

text: not determined

text: not determined

text: Lactiplantibacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437

text: Lactobacillus plantarum ATCC 14917

text: Reference Genome

text: not determined

characteristic: sop

text: ATCC 14917, IAM 12477

text: Homo sapiens

characteristic: specific host

text: ATCC 14917

characteristic: strain

text: plantarum

characteristic: sub species

text: MIGS Cultured Bacterial/Archaeal sample from Lactobacillus plantarum subsp. plantarum ATCC 14917

text: type strain of Lactobacillus plantarum

characteristic: type material


name: MHV-68 3T12 18hpi PolyA-selected Replicate 1

characteristic: External Id

characteristic: INSDC center alias

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Washington University, School of Medicine

characteristic: Submitter Id

text: NCBI

characteristic: broker name

text: Murid gammaherpesvirus 4

characteristic: organism

characteristic: title


name: MHV-68 3T12 18hpi PolyA-selected Replicate 2

text: Washington University, School of Medicine

text: public

text: NCBI

text: Murid gammaherpesvirus 4


text: School of Biology, Georgia Institute of Technology

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: age

text: Human

text: Homo sapiens

text: male

characteristic: sex

text: Brain

text: prefrontal cortex

characteristic: tissue


characteristic: External Id

text: live

text: Generic

text: Pan troglodytes

text: Pan troglodytes

text: male

text: Brain

text: prefrontal cortex


text: PICB

text: live

text: Generic

text: chimpanzee

text: Pan troglodytes

text: Prefrontal Cortex

text: Prefrontal Cortex


Lactobacillus plantarum 2165

text: Kingston University

text: live

text: Generic

characteristic: collection date

text: Lactobacillus plantarum

characteristic: description

text: Russia

characteristic: geo loc name

text: milk products

characteristic: isolation source

text: Lactiplantibacillus plantarum 2165

characteristic: strain

text: General Sample for Lactobacillus plantarum


Lactobacillus plantarum 2025

text: Kingston University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: culture collection

text: Lactobacillus plantarum

text: Russia

text: milk products

text: Lactiplantibacillus plantarum 2025


Lactobacillus plantarum strain 4_3

text: Lactobacillus plantarum

text: live

text: Generic

text: China: Yunnan

text: fermented soybean

text: Lactiplantibacillus plantarum 4_3

characteristic: organism

text: General Sample for Lactobacillus plantarum 4_3

characteristic: title


text: East Carolina University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: adult

text: USA: University of Indiana

text: adult male

characteristic: isolate

text: Granatina granatina

text: tissue sample

characteristic: sample type

text: male

text: whole brain

characteristic: tissue type

text: Brain Transcriptome for Uraeginthus granatina


Library prep Quagga

characteristic: External Id

text: Natural History Museum of Denmark

text: live

text: Generic

text: Quagga

characteristic: label

text: Equus quagga burchellii

text: quagga

characteristic: sub species

text: General Sample for Equus quagga quagga


Lactobacillus plantarum 19L3

text: Fundacion para el Fomento de la Investigacion Sanitaria y Biomedica de la Comunidad Valenciana (FISABIO-Salud Publica)

characteristic: INSDC center name

text: live

text: MIGS/MIMS/MIMARKS.microbial

text: MIGS.ba

text: sheep milk cheese

characteristic: biome

characteristic: collection date

text: Lactobacillus plantarum 19L3 was isolated from sheep-milk cheese in Slovakia with the objective to find novel strains for starter culture for production of traditional Slovak ovine cheese Slovenská bryndza from pasteurized sheep milk.

characteristic: description

text: sheep milk cheese

characteristic: feature

text: Slovakia

characteristic: geo loc name

characteristic: investigation type

text: Lactiplantibacillus plantarum 19L3

text: Lactobacillus plantarum strain isolated from sheep-milk cheese in Slovakia with the objective to find novel strains for starter culture for production of traditional Slovak ovine cheese Slovenská bryndza

characteristic: project name

characteristic: strain

text: Cultured Bacterial/Archaeal sample for Lactobacillus plantarum str. 19L3 from sheep-milk cheese


CGMCC 1.2437

text: Shanghai Majorbio

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: pickled cabbage

characteristic: isolation source

characteristic: organism

text: CGMCC 1.2437

text: plantarum

text: Generic sample from Lactobacillus plantarum subsp. plantarum

characteristic: title

text: type strain of Lactobacillus plantarum

characteristic: type material


DSM 10667

characteristic: External Id

text: Shanghai Majorbio

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

characteristic: collection date

characteristic: culture-collection

text: France

text: beer contaminant

text: Lactiplantibacillus paraplantarum DSM 10667

text: DSM 10667

text: Generic sample from Lactobacillus paraplantarum

text: type strain of Lactobacillus paraplantarum


name: growth of Lactobacillus plantarum ST-III using FOS

text: State key laboratory of Dairy biotechnology

text: live

text: Generic

text: China

characteristic: geo loc name

text: Lactiplantibacillus plantarum ST-III

text: ST-III

text: Transcriptome for Lactobacillus plantarum ST-III in FOS


name: growth of Lactobacillus plantarum ST-III using Glucose

text: live

text: Generic

text: Lactiplantibacillus plantarum ST-III

text: ST-III

characteristic: strain

text: Transcriptome for Lactobacillus plantarum ST-III in glucose


AVAQ

text: NCBI

characteristic: INSDC first public

text: live

text: Generic

characteristic: collection-date

text: India: MS

characteristic: country

text: non-alcoholic fermented bamboo shoot products

characteristic: isolation-source

text: Lactiplantibacillus plantarum EGD-AQ4

text: Sample from Lacticaseibacillus plantarum EGD-AQ4


ASJE

text: NCBI

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: sourdough

text: Lactiplantibacillus plantarum IPLA88

text: Sample from Lacticaseibacillus plantarum IPLA88


AXDQ

text: NCBI

text: live

text: Generic

characteristic: NCBI submission package

text: India: Karnal, Haryana

text: Homo sapiens

characteristic: host

text: gut

text: Lactiplantibacillus plantarum LP91

characteristic: organism

text: Sample from Lacticaseibacillus plantarum LP91


AGRI

characteristic: External Id

text: NCBI

text: live

text: Generic

text: Sweden

text: grass silage

text: Lactiplantibacillus plantarum subsp. plantarum NC8

text: plantarum

characteristic: sub species

text: Sample from Lacticaseibacillus plantarum subsp. plantarum NC8

characteristic: title


AUTE

text: NCBI

characteristic: INSDC center name

text: live

text: Generic

text: South Korea

text: Drosophila melanogaster

text: intestine

text: Lactiplantibacillus plantarum WJL

text: WJL

text: Sample from Lacticaseibacillus plantarum WJL


APHP

text: NCBI

text: live

text: Generic

text: France

text: unpasteurized Camembert cheese

text: Lactiplantibacillus plantarum UCMA 3037

text: UCMA 3037

text: Sample from Lacticaseibacillus plantarum UCMA 3037


text: NCBI

text: live

text: Generic

text: Lactiplantibacillus plantarum JDM1

text: Sample from Lacticaseibacillus plantarum JDM1


text: NCBI

text: live

text: Generic

text: Lactiplantibacillus plantarum ST-III

text: ST-III

text: plantarum

text: Sample from Lacticaseibacillus plantarum subsp. plantarum ST-III


text: NCBI

text: live

text: Generic

text: Lactiplantibacillus plantarum subsp. plantarum P-8

text: plantarum

text: Sample from Lacticaseibacillus plantarum subsp. plantarum P-8


text: NCBI

text: live

text: Generic

characteristic: culture-collection

text: Lactiplantibacillus plantarum 16

text: Sample from Lacticaseibacillus plantarum 16


text: NCBI

text: live

text: Generic

characteristic: collection date

text: USA: Santa Rita Mountains, AZ

text: TRUE

characteristic: environmental sample

text: USA

characteristic: geo loc name

text: Diceroprocta semicincta (cicada)

text: SMDSEM

characteristic: isolate

text: symbiont metagenome

characteristic: metagenome source

text: TRUE

characteristic: metagenomic

text: Candidatus Karelsulcia muelleri SMDSEM

text: Sample from Candidatus Sulcia muelleri SMDSEM


text: NCBI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: healthy newborn fecal sample

characteristic: isolation-source

text: Lactiplantibacillus plantarum ZJ316

characteristic: strain

text: Sample from Lacticaseibacillus plantarum ZJ316


HCV

text: Pathogen.cl

characteristic: BioSampleModel

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HCV

text: UMass Medical School

characteristic: INSDC center alias

text: umass medical school

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NCBI

characteristic: broker name

text: MassBiologics

text: United States

text: Hepatitis C

text: Human serum

text: Hepacivirus C

text: Clinical or host-associated pathogen sample for Hepatitis C virus


WHE 92

characteristic: External Id

text: Technical University of Denmark

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Ennahar et al

characteristic: collected by

characteristic: collection date

text: First described by Ennahar et al (1996) AEM 62:4381

characteristic: description

text: France

text: Munster cheese

characteristic: isolation source

text: Lactiplantibacillus plantarum WHE 92

characteristic: organism

text: WHE 92

text: Microbe sample for Lactobacillus plantarum subsp. plantarum

characteristic: title


name: Lactobacillus plantarum subsp. plantarum ATCC 14917 WT

text: Massey University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

text: Dr Gillian Norris

characteristic: biomaterial provider

text: Laboratory wildtype Lactobacillus plantarum subsp. plantarum ATCC 14917 strain

text: New Zealand: Laboratory C4.21 of Science Towers Located at Palmerston North Massey University Campus

characteristic: geo loc name

text: de Man, Rogosa & Sharpe laboratory culture

text: Lactiplantibacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437

text: ATCC 14917

characteristic: strain

text: plantarum

characteristic: sub species

text: Microbe sample from Lacticaseibacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437

text: type strain of Lactobacillus plantarum

characteristic: type material


name: Lactobacillus plantarum subsp. plantarum ATCC 14917 2

characteristic: External Id

text: Massey University

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: SRA accession

text: Dr Gillian Norris

text: Lactobacillus plantarum subsp. plantarum ATCC 14917 mutant resistant to Glycocin F

text: ATCC 14917

text: plantarum

text: type strain of Lactobacillus plantarum


name: Lactobacillus plantarum subsp. plantarum ATCC 14917 3

text: Massey University

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Dr Gillian Norris

characteristic: collection date

text: ATCC 14917

text: plantarum

text: type strain of Lactobacillus plantarum


name: Lactobacillus plantarum subsp. plantarum ATCC 14917 4

text: Massey University

text: live

text: Microbe, viral or environmental

text: Dr Gillian Norris

characteristic: description

characteristic: isolation source

characteristic: organism

text: ATCC 14917

text: plantarum

text: type strain of Lactobacillus plantarum


text: KU Leuven, Centre of Microbial and Plant Genetics

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: collection-date

text: AXZV

characteristic: common name

text: Belgium

characteristic: country

text: vagina of healthy woman

characteristic: isolation-source

text: Homo sapiens

characteristic: nat-host

text: Lactiplantibacillus plantarum CMPG5300

text: Sample from Lacticaseibacillus plantarum CMPG5300

characteristic: title


Equus quagga quagga, QUA

characteristic: External Id

text: Natural History Museum of Denmark

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Ludovic Orlando

characteristic: biomaterial provider

text: Equus quagga burchellii

text: female

characteristic: sex

characteristic: specimen voucher

text: quagga

characteristic: sub species

text: hair

characteristic: tissue

text: Model organism or animal sample from Equus burchellii quagga


tag: Namespace:University of Michigan

text: University of Michigan

text: live

characteristic: INSDC status

text: MIMARKS.specimen

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: mock community

characteristic: biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

characteristic: description

text: LabDiet 5001

characteristic: diet

text: genomic DNA

characteristic: feature

text: USA: Michigan, Ann Arbor

characteristic: geo loc name

text: genomic DNA

characteristic: material

text: sythetic metagenome

characteristic: organism

text: synthetic metagenome

text: -20 C

text: mouse gut metagenome

text: Mock community sample 3


characteristic: External Id

text: University of Michigan

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.host-associated

text: mock community

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: LabDiet 5001

text: genomic DNA

text: USA: Michigan, Ann Arbor

text: genomic DNA

text: sythetic metagenome

text: synthetic metagenome

text: -20 C

text: mouse gut metagenome

characteristic: title

text: Mock community sample 2


text: scrap

tag: Namespace:University Paris-Sud

text: University Paris-Sud

text: live

characteristic: INSDC status

text: MIMARKS.survey

text: these sequences were scrapped

text: these sequences were scrapped

text: soil metagenome

text: soil metagenome

text: these sequences were scrapped

characteristic: sample title

text: these sequences were scrapped


tag: Namespace:UMR1347 Agroecology

text: UMR1347 Agroecology

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: collection date

text: Dilution 1 from Epoisses soil

text: Dilution 1 from Epoisses soil

text: agricultural field

characteristic: env biome

text: Corn agricultural field

characteristic: env feature

text: soil

text: France:Epoisses

text: 46.91 N 5.54 E

characteristic: lat lon

text: soil metagenome

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene


text: UMR1347 Agroecology

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

characteristic: SRA accession

text: Dilution 2 from Epoisses soil

characteristic: description

text: Dilution 2 from Epoisses soil

text: agricultural field

text: Corn agricultural field

text: soil

text: France:Epoisses

characteristic: geo loc name

text: 46.91 N 5.54 E

text: soil metagenome

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene


characteristic: External Id

text: UMR1347 Agroecology

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Dilution 3 from Epoisses soil

text: Dilution 3 from Epoisses soil

text: agricultural field

text: Corn agricultural field

text: soil

text: France:Epoisses

text: 46.91 N 5.54 E

text: soil metagenome

characteristic: organism

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene


text: UMR1347 Agroecology

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Dilution 4 from Epoisses soil

text: Dilution 4 from Epoisses soil

text: agricultural field

text: Corn agricultural field

text: soil

text: France:Epoisses

text: 46.91 N 5.54 E

text: soil metagenome

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene


text: scrap

text: UMR1347 Agroecology

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: these sequences were scrapped

text: these sequences were scrapped

text: soil metagenome

text: soil metagenome

text: these sequences were scrapped

text: these sequences were scrapped


text: UMR1347 Agroecology

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Dilution 1 from Ulleraker soil

text: Dilution 1 from Ulleraker soil

text: agricultural field

text: agricultural field

text: soil

text: Sweden:Ulleraker

text: 59.83 N 17.65 E

text: soil metagenome

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene

characteristic: title


text: UMR1347 Agroecology

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission model

text: MIMARKS.survey

text: Dilution 2 from Ulleraker soil

text: Dilution 2 from Ulleraker soil

text: agricultural field

text: agricultural field

text: soil

text: Sweden:Ulleraker

text: 59.83 N 17.65 E

text: soil metagenome

text: soil metagenome

characteristic: sample title

text: 454 pyrosequencing of 16S rDNA gene


text: UMR1347 Agroecology

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: collection date

text: Dilution 3 from Ulleraker soil

text: Dilution 3 from Ulleraker soil

text: agricultural field

text: agricultural field

text: soil

text: Sweden:Ulleraker

text: 59.83 N 17.65 E

text: soil metagenome

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene


text: UMR1347 Agroecology

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Dilution 4 from Ulleraker soil

text: Dilution 4 from Ulleraker soil

text: agricultural field

characteristic: env biome

text: agricultural field

characteristic: env feature

text: soil

text: Sweden:Ulleraker

text: 59.83 N 17.65 E

text: soil metagenome

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene


text: UMR1347 Agroecology

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

characteristic: SRA accession

text: Dilution 3 from Epoisses soil rescued with dilution 3 from Epoisses soil

text: agricultural field

text: Corn agricultural field

text: soil

text: France:Epoisses

text: 46.91 N 5.54 E

characteristic: lat lon

text: soil metagenome

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene


text: UMR1347 Agroecology

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Dilution 3 from Epoisses soil rescued with dilution 3 from Ulleraker soil

characteristic: description

text: agricultural field

text: Corn agricultural field

text: soil

text: France:Epoisses

characteristic: geo loc name

text: 46.91 N 5.54 E

text: soil metagenome

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene


characteristic: External Id

text: UMR1347 Agroecology

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Dilution 3 from Ulleraker soil rescued with dilution 2 from Ulleraker soil

text: agricultural field

text: agricultural field

text: soil

text: Sweden:Ulleraker

text: 59.83 N 17.65 E

text: soil metagenome

characteristic: organism

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene


text: UMR1347 Agroecology

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Dilution 3 from Ulleraker soil incubated during 105 days used as control

text: agricultural field

text: agricultural field

text: soil

text: Sweden:Ulleraker

text: 59.83 N 17.65 E

text: soil metagenome

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene


text: UMR1347 Agroecology

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Dilution 3 from Ulleraker soil rescued with dilution 2 from Epoisses soil

text: agricultural field

text: agricultural field

text: soil

text: Sweden:Ulleraker

text: 59.83 N 17.65 E

text: soil metagenome

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene


text: UMR1347 Agroecology

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Dilution 4 from Epoisses soil

text: Dilution 4 from Epoisses soil

text: agricultural field

text: Corn agricultural field

text: soil

text: France:Epoisses

text: 46.91 N 5.54 E

text: soil metagenome

text: soil metagenome

text: 454 pyrosequencing of 16S rDNA gene

characteristic: title


text: UMR1347 Agroecology

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission model

text: MIMARKS.survey

text: Dilution 1 from Ulleraker soil

text: Dilution 1 from Ulleraker soil

text: agricultural field

text: agricultural field

text: soil

text: Sweden:Ulleraker

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text: Mock community sample 9

text: Mock community sample 9

text: synthetic

text: genomic DNA

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text: USA: Michigan, Ann Arbor

characteristic: geo loc name

text: 42.2820973 N 83.7338904 W

text: sythetic metagenome

characteristic: organism

text: synthetic metagenome

text: -80 C

text: Mock community sample 9

text: Mock community sample 9


tag: Namespace:The Ohio State University

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text: MIMARKS.specimen

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text: urban biome

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characteristic: feature

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

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text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK01CV1


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text: urban biome

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

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text: human saliva

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text: Sample from human vaginal microbiome - sample MK01MV1


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characteristic: SRA accession

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

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text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK02CO1


characteristic: External Id

text: The Ohio State University

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text: urban biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

characteristic: lat lon

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK02CV1


text: The Ohio State University

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text: urban biome

text: Keywords: GSC:MIxS;MIMARKS:5.0

text: human-associated habitat

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characteristic: geo loc name

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

characteristic: organism

text: human metagenome

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text: Sample from human oral microbiome - sample MK02MO1


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text: urban biome

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: MIMARKS Specimen sample from human metagenome

text: Sample from human vaginal microbiome - sample MK02MV1


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text: urban biome

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

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text: Sample from human oral microbiome - sample MK03CO1


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text: urban biome

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

characteristic: material

text: metagenome

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text: 39.961612 N 82.998965 W

text: human saliva

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text: 39.961612 N 82.998965 W

text: human saliva

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text: Sample from human oral microbiome - sample MK04CO1


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characteristic: SRA accession

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text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

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text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK04CO2


characteristic: External Id

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text: USA: Ohio

text: 39.961612 N 82.998965 W

characteristic: lat lon

text: human saliva

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text: Sample from human vaginal microbiome - sample MK04CV1


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text: urban biome

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characteristic: geo loc name

text: 39.961612 N 82.998965 W

text: human saliva

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characteristic: organism

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text: urban biome

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text: 39.961612 N 82.998965 W

text: human saliva

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text: Sample from human oral microbiome - sample MK04MO1


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text: urban biome

characteristic: biome

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

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text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK04MV1


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characteristic: INSDC last update

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text: urban biome

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text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

characteristic: material

text: metagenome

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text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK05CO1


text: The Ohio State University

characteristic: INSDC secondary accession

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text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

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text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

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text: Sample from human vaginal microbiome - sample MK05CV1


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characteristic: NCBI submission model

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text: urban biome

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

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characteristic: title


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characteristic: NCBI submission package

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

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text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK05MV1


text: The Ohio State University

text: live

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text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: SRA accession

text: urban biome

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characteristic: description

text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK06CO1


characteristic: External Id

text: The Ohio State University

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text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

text: metagenome

text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

characteristic: lat lon

text: human saliva

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text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK06CV1


text: The Ohio State University

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text: urban biome

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characteristic: geo loc name

text: 39.961612 N 82.998965 W

text: human saliva

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characteristic: organism

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK06MO1


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text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

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text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK06MV1


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text: urban biome

characteristic: biome

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characteristic: feature

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

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text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK07CO1


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characteristic: INSDC last update

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text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

characteristic: material

text: metagenome

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text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK07CV1


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text: urban biome

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

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text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK07MO1


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characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

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text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK07MV1

characteristic: title


text: The Ohio State University

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characteristic: NCBI submission package

text: urban biome

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

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text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK08CO1


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characteristic: SRA accession

text: urban biome

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text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK08CO2


characteristic: External Id

text: The Ohio State University

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text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

text: metagenome

text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

characteristic: lat lon

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK08CV1


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text: live

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

text: metagenome

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characteristic: geo loc name

text: 39.961612 N 82.998965 W

text: human saliva

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characteristic: organism

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK08CV2


text: The Ohio State University

characteristic: INSDC center name

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text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

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text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK08MO1


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text: urban biome

characteristic: biome

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text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

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text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK08MO2


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characteristic: INSDC last update

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text: urban biome

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text: 39.961612 N 82.998965 W

text: human saliva

characteristic: material

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK08MV1


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characteristic: INSDC secondary accession

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characteristic: INSDC status

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

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text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK08MV2


text: The Ohio State University

text: live

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characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

text: metagenome

text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK09CO1

characteristic: title


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text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission package

text: urban biome

characteristic: collection date

text: metagenome

text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK09CV1


text: The Ohio State University

text: live

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: SRA accession

text: urban biome

text: metagenome

characteristic: description

text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK09MO1


characteristic: External Id

text: The Ohio State University

text: live

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

text: metagenome

text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

characteristic: lat lon

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK09MV1


text: The Ohio State University

text: live

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

text: metagenome

text: human-associated habitat

text: USA: Ohio

characteristic: geo loc name

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

characteristic: organism

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK10CO1


text: The Ohio State University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

text: metagenome

text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK10CV1


text: The Ohio State University

text: live

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

characteristic: biome

text: metagenome

text: human-associated habitat

characteristic: feature

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human oral microbiome - sample MK10MO1


text: The Ohio State University

characteristic: INSDC last update

text: live

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.miscellaneous

text: urban biome

text: metagenome

text: human-associated habitat

text: USA: Ohio

text: 39.961612 N 82.998965 W

text: human saliva

characteristic: material

text: metagenome

text: human metagenome

text: Roche 454 GS FLX

text: Sample from human vaginal microbiome - sample MK10MV1


text: scrap

text: LECOB

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: these sequences were scrapped

text: these sequences were scrapped

text: metagenome

text: marine metagenome

text: these sequences were scrapped

characteristic: sample title

text: these sequences were scrapped


text: scrap

tag: Namespace:Universidade de Vigo

text: Universidade de Vigo

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

text: these sequences were scrapped

text: these sequences were scrapped

text: metagenome

text: gut metagenome

text: these sequences were scrapped

text: these sequences were scrapped

characteristic: title


characteristic: Asian

characteristic: Black

text: University of Michigan

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text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

characteristic: NSAID

characteristic: Native

characteristic: Pacific

characteristic: SRA accession

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characteristic: age

characteristic: bmi

text: Uchime

characteristic: chimera check

text: human stool sample

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text: human stool sample

characteristic: diabetic

text: High Risk Normal

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text: human body

characteristic: env biome

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characteristic: env feature

text: feces

characteristic: ethnic

text: male

characteristic: gender

text: USA

characteristic: height

text: Homo sapiens

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text: paired-end

characteristic: lib const meth

text: metagenome

text: human gut metagenome

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characteristic: pcr cond

text: FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT

characteristic: pcr primers

text: toilet hat

text: Illumina MiSeq

characteristic: smoke

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: weight

characteristic: white


characteristic: Asian

characteristic: Black

characteristic: External Id

text: University of Michigan

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characteristic: INSDC first public

characteristic: INSDC last update

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characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: NCBI submission model

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characteristic: NCBI submission package

characteristic: NSAID

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characteristic: Pacific

characteristic: SRA accession

characteristic: abx

characteristic: age

characteristic: bmi

text: Uchime

characteristic: chimera check

text: human stool sample

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text: human stool sample

characteristic: diabetic

text: High Risk Normal

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text: feces

text: female

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characteristic: geo loc name

text: Homo sapiens

text: paired-end

text: metagenome

characteristic: organism

text: human gut metagenome

text: toilet hat

characteristic: sample title

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text: 16S rRNA

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characteristic: Asian

characteristic: Black

characteristic: External Id

text: University of Michigan

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

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text: human stool sample

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text: Adenoma

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text: human body

characteristic: env biome

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characteristic: env feature

text: feces

characteristic: ethnic

text: female

characteristic: gender

text: USA

characteristic: height

text: Homo sapiens

characteristic: host

text: paired-end

characteristic: lib const meth

text: metagenome

text: human gut metagenome

characteristic: other

characteristic: pcr cond

characteristic: pcr primers

text: toilet hat

text: Illumina MiSeq

characteristic: smoke

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: weight

characteristic: white


characteristic: Asian

characteristic: Black

characteristic: External Id

text: University of Michigan

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: NSAID

characteristic: Native

characteristic: Pacific

characteristic: SRA accession

characteristic: abx

characteristic: age

characteristic: bmi

text: Uchime

characteristic: chimera check

text: human stool sample

characteristic: description

text: human stool sample

characteristic: diabetic

text: Normal

text: human body

text: gut

text: feces

text: female

text: USA

characteristic: geo loc name

text: Homo sapiens

text: paired-end

text: metagenome

characteristic: organism

text: human gut metagenome

text: toilet hat

characteristic: sample title

text: Illumina MiSeq

text: 16S rRNA

characteristic: title