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text: lake

text: water

text: Finland: Lammi

characteristic: geo loc name

text: 61.13 N 25.24 E

characteristic: lat lon

text: metagenome

text: freshwater metagenome


text: scrap

text: UPMC

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

text: these sequences were scrapped

text: these sequences were scrapped

text: metagenome

text: marine metagenome

text: these sequences were scrapped

text: these sequences were scrapped


tag: Namespace:University of Chicago

text: University of Chicago

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

characteristic: SRA accession

text: Baboon vaginal swab

characteristic: description

text: Baboon vaginal swab

text: savanna

text: forest

text: vaginal epithelium

text: Kenya:Nairobi

text: Papio anubis

characteristic: host

text: female

characteristic: host sex

characteristic: host subject id

text: 1.35 S 36.71 E

text: vaginal metagenome

characteristic: organism

text: vaginal metagenome


characteristic: External Id

text: University of Chicago

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Baboon vaginal swab

text: Baboon vaginal swab

text: savanna

characteristic: env biome

text: forest

text: vaginal epithelium

text: Kenya:Nairobi

text: Papio anubis

text: female

text: 1.35 S 36.71 E

text: vaginal metagenome

text: vaginal metagenome

characteristic: sample title

characteristic: title


text: Mock

text: University of Chicago

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

characteristic: collection date

text: Swab

text: Swab

text: USA: Michigan

characteristic: geo loc name

text: Mock

text: Mock

text: 42.28 N 83.73 W

text: vaginal metagenome

text: vaginal metagenome

text: Mock

text: Mock


text: Water

text: University of Chicago

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

text: Swab

text: Swab

text: water

text: water

characteristic: env feature

text: USA: Michigan

text: Water

text: Water

text: 42.28 N 83.73 W

characteristic: lat lon

text: vaginal metagenome

text: vaginal metagenome

text: Water

text: Water


WJL

text: Institute of Functional Genomics Lyon (IGFL)

text: live

text: Microbe, viral or environmental

text: South Korea

text: Drosophila melanogaster

characteristic: host

text: insect gut

characteristic: isolation source

text: Lactiplantibacillus plantarum WJL

text: cell culture

characteristic: sample type

text: WJL

characteristic: strain

text: Microbe sample from Lacticaseibacillus plantarum WJL


tag: Namespace:Observatoire Oceanologique de banyuls

characteristic: External Id

text: mothur

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Apex

characteristic: Polyp

characteristic: SRA accession

characteristic: colony

text: orange

characteristic: colour

characteristic: description

text: coral reef

text: submarine canyon

text: organic feature

text: France: Lacaze-Duthiers Submarine Canyon

text: 42.540667 N 3.419167 E

text: marine metagenome

characteristic: organism

text: coral metagenome

text: Illumina TruSeq DNA library preparation protocol

text: L. pertusa

characteristic: species


text: mothur

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

text: Basal

characteristic: collection date

text: orange

text: coral reef

characteristic: env biome

text: submarine canyon

text: organic feature

characteristic: geo loc name

text: 42.540667 N 3.419167 E

text: marine metagenome

text: coral metagenome

characteristic: sample title

text: L. pertusa

characteristic: title


characteristic: External Id

text: mothur

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Apex

characteristic: Polyp

text: white

text: coral reef

text: submarine canyon

characteristic: env feature

text: organic feature

text: 42.540667 N 3.419167 E

characteristic: lat lon

text: marine metagenome

text: coral metagenome

text: L. pertusa


text: mothur

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Basal

characteristic: SRA accession

characteristic: colony

text: white

characteristic: colour

characteristic: description

text: coral reef

text: submarine canyon

text: organic feature

text: 42.540667 N 3.419167 E

text: marine metagenome

characteristic: organism

text: coral metagenome

text: L. pertusa

characteristic: species


text: mothur

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

text: Apex

characteristic: collection date

text: white

text: coral reef

text: submarine canyon

text: organic feature

text: 42.540667 N 3.419167 E

text: marine metagenome

text: coral metagenome

text: L. pertusa


characteristic: External Id

text: mothur

characteristic: INSDC center name

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Basal

text: white

text: coral reef

characteristic: env biome

text: submarine canyon

text: organic feature

characteristic: geo loc name

text: 42.540667 N 3.419167 E

text: marine metagenome

text: coral metagenome

characteristic: sample title

text: L. pertusa

characteristic: title


text: mothur

characteristic: INSDC first public

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Apex

characteristic: Polyp

characteristic: SRA accession

characteristic: colony

text: white

text: coral reef

text: submarine canyon

characteristic: env feature

text: organic feature

text: 42.540667 N 3.419167 E

characteristic: lat lon

text: marine metagenome

text: coral metagenome

text: M. oculata


text: mothur

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Basal

text: white

characteristic: colour

characteristic: description

text: coral reef

text: submarine canyon

text: organic feature

text: 42.540667 N 3.419167 E

text: marine metagenome

characteristic: organism

text: coral metagenome

text: M. oculata

characteristic: species


characteristic: External Id

text: mothur

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

text: Basal

characteristic: collection date

text: white

text: coral reef

text: submarine canyon

text: organic feature

text: 42.540667 N 3.419167 E

text: marine metagenome

text: coral metagenome

text: M. oculata


text: scrap

text: mothur

characteristic: INSDC first public

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: these sequences were scrapped

text: these sequences were scrapped

text: metagenome

text: coral metagenome

text: these sequences were scrapped

characteristic: sample title

text: these sequences were scrapped

characteristic: title


text: ZE1.L3.B1.1_ACGTCGCA.AGRGTTTGATCMTGGCTCAG

text: mothur

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Basal

characteristic: Polyp

characteristic: SRA accession

characteristic: colony

text: white

text: coral reef

characteristic: env biome

text: submarine canyon

characteristic: env feature

text: organic feature

characteristic: geo loc name

text: 42.540667 N 3.419167 E

text: marine metagenome

text: coral metagenome

text: L. pertusa


text: ZE2.M2.B1.3_ACGTGTAG.AGRGTTTGATCMTGGCTCAG

text: mothur

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: Apex

text: white

characteristic: colour

characteristic: description

text: coral reef

text: submarine canyon

text: organic feature

text: 42.540667 N 3.419167 E

characteristic: lat lon

text: marine metagenome

characteristic: organism

text: coral metagenome

text: M. oculata


characteristic: External Id

text: ZE2.M2.B1.5_ACTAACCC.AGRGTTTGATCMTGGCTCAG

text: mothur

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

text: Basal

text: white

text: coral reef

text: submarine canyon

text: organic feature

text: 42.540667 N 3.419167 E

text: marine metagenome

text: coral metagenome

text: M. oculata

characteristic: species


text: scrap

text: University of Jyvaskyla

characteristic: INSDC first public

text: live

text: MIMS.me

characteristic: SRA accession

text: thesesequenceswerescrapped

text: thesesequenceswerescrapped

text: metagenome

text: endophyte metagenome

text: thesesequenceswerescrapped

characteristic: sample title

text: thesesequenceswerescrapped

characteristic: title


text: scrap

tag: Namespace:Nestle Research Center

text: mothur

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

text: these sequences were scrapped

text: these sequences were scrapped

text: metagenome

text: human gut metagenome

text: these sequences were scrapped

text: these sequences were scrapped


text: BioCI

text: live

text: Plant

text: japonica

characteristic: cultivar

text: two-week-old seeding

characteristic: dev stage

text: USA: Michigan

characteristic: geo loc name

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: Nipponbare seedling mRNA-seq (Library: PMJ_CU_01)

characteristic: sample name

text: Transgenic Nipponbare plant expressing FLAG-His tagged ribosomal large unit protein (RPL18) (PMJ_CU_01)

text: seedling

characteristic: tissue


text: BioCI

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Plant

text: japonica

text: 0-5 cm panicles

text: USA: Michigan

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: Nipponbare panicle TRAP-seq (Library: PMJ_CZ_01)

text: Transgenic Nipponbare plant expressing FLAG-His tagged ribosomal large unit protein (RPL18) (PMJ_CZ_01)

text: panicle


characteristic: External Id

text: BioCI

text: live

text: Plant

text: japonica

text: callus

text: USA: Michigan

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: Nipponbare callus mRNA-seq (Library: PMJ_CX_01)

text: Transgenic Nipponbare plant expressing FLAG-His tagged ribosomal large unit protein (RPL18) (PMJ_CX_01)

text: callus


text: BioCI

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Plant

text: japonica

text: two-week-old seeding

text: USA: Michigan

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: Nipponbare seedling TRAP-seq (Library: PMJ_CV_01)

text: Transgenic Nipponbare plant expressing FLAG-His tagged ribosomal large unit protein (RPL18) (PMJ_CV_01)

text: seedling


text: BioCI

text: live

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

text: japonica

text: callus

text: USA: Michigan

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: Nipponbare callus TRAP-seq (Library: PMJ_CY_01)

text: Transgenic Nipponbare plant expressing FLAG-His tagged ribosomal large unit protein (RPL18) (PMJ_CY_01)

text: callus


text: BioCI

characteristic: INSDC first public

text: live

text: Plant

text: japonica

text: 0-5 cm panicles

text: USA: Michigan

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: Nipponbare panicle mRNA-seq (Library: PMJ_DA_01)

text: Transgenic Nipponbare plant expressing FLAG-His tagged ribosomal large unit protein (RPL18) (PMJ_DA_01)

text: panicle


text: scrap

tag: Namespace:The Chinese University of Hong Kong

text: mothur

text: live

text: MIGS/MIMS/MIMARKS.human-gut

text: MIMARKS.survey

characteristic: SRA accession

text: these sequences were scrapped

characteristic: description

text: these sequences were scrapped

text: metagenome

text: human gut metagenome

text: these sequences were scrapped

text: these sequences were scrapped


text: scrap

tag: Namespace:Penn State

text: mothur

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIMARKS.survey

text: these sequences were scrapped

text: these sequences were scrapped

text: metagenome

text: insect metagenome

text: these sequences were scrapped

characteristic: sample title

text: these sequences were scrapped

characteristic: title


tag: Namespace:University of Sheffield

text: mothur

text: live

text: MIGS/MIMS/MIMARKS.human-vaginal

text: MIMARKS.survey

characteristic: collection date

text: vaginal microbiome

text: vaginal microbiome

text: vaginal swab eluate

characteristic: env biome

text: vaginal swab eluate

characteristic: env feature

text: vaginal swab eluate

text: United Kingdom

text: Homo sapiens

characteristic: host

text: metagenome

text: human vaginal metagenome

text: Roche 454, V1-V3 16s libraries using 27F (YM variant) and 519R, analysis using mothur pipeline, chimera removal (UCHIME), trimming to 400bp and SILVA alignment


text: mothur

characteristic: INSDC last update

text: live

text: MIGS/MIMS/MIMARKS.human-vaginal

text: MIMARKS.survey

text: vaginal microbiome

text: vaginal microbiome

text: vaginal swab eluate

text: vaginal swab eluate

text: vaginal swab eluate

text: United Kingdom

characteristic: geo loc name

text: Homo sapiens

text: metagenome

text: human vaginal metagenome


text: scrap

characteristic: External Id

text: mothur

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.human-vaginal

text: MIMARKS.survey

text: these sequences were scrapped

text: these sequences were scrapped

text: metagenome

text: human vaginal metagenome

text: these sequences were scrapped

text: these sequences were scrapped


text: Core Unit Systems Medicine, Medical Department, University of Würzburg

characteristic: INSDC center name

text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

characteristic: human cell line

text: human cell line HeLa-S3

characteristic: organism

text: Homo sapiens

text: cell culture infection model

text: Mock 2 h replicate 1


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 2 h replicate 2


characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 2 h replicate 3


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 4 h replicate 1

characteristic: title


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 4 h replicate 2


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 4 h replicate 3


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 8 h replicate 1


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 8 h replicate 2


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 8 h replicate 3


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 16 h replicate 1


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 16 h replicate 2


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 16 h replicate 3


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 24 h replicate 1


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 24 h replicate 2


text: live

text: Generic

text: HeLa-S3 (ATCC CCL-2.2)

text: human cell line HeLa-S3

text: Homo sapiens

text: cell culture infection model

text: Mock 24 h replicate 3


text: mothur

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIMARKS.survey

characteristic: collection date

text: Collection Control

characteristic: description

text: Collection Control

text: Control

text: Extraction Control

text: Norgen Sputum Collection, Preservation and Isolation Kit

text: USA: Michigan, Ann Arbor

text: 42.28 N 83.73 W

characteristic: lat lon

text: metagenome

text: human lung metagenome

characteristic: sample title

text: MiSeq


text: mothur

characteristic: INSDC last update

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIMARKS.survey

text: Collection Control

text: Collection Control

text: Control

characteristic: env biome

text: Extraction Control

characteristic: env feature

text: USA: Michigan, Ann Arbor

text: 42.28 N 83.73 W

text: metagenome

text: human lung metagenome

text: MiSeq


characteristic: External Id

text: mothur

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIMARKS.survey

text: No Template Control

text: No Template Control

text: Control

text: PCR Control

text: USA: Michigan, Ann Arbor

characteristic: geo loc name

text: 42.28 N 83.73 W

text: metagenome

text: human lung metagenome

text: MiSeq