characteristic: External Id

text: multi-ingredient| dairy

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: fda lab id

text: USA:IN

text: mac and cheese

characteristic: isolation source

text: macaroni and cheese:FOODON_00002960

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


status: PUBLIC

text: Human Microbiome Project

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: HMP418 Atopobium parvulum DNF00906 DNF00906

characteristic: description

text: HMP1647 Atopobium parvulum DNF00906

tag: attribute

text: Homo sapiens

characteristic: host

text: vagina

text: Lancefieldella parvula DNF00906

characteristic: strain

text: Microbe sample from Lancefieldella parvula DNF00906

characteristic: title


characteristic: External Id

text: University of Missouri - Columbia

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: R. F. Ross

characteristic: collection date

characteristic: culture collection

text: Isolated from arthritic pig joint by R. F. Ross in approx 1970

text: Sus scrofa

text: Joint

text: pig joint

text: Metamycoplasma hyosynoviae

text: Microbe sample from Metamycoplasma hyosynoviae


Trichosporon inkin

text: JCVI

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.human-skin

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: estimated size

text: Homo sapiens

text: Trichosporon inkin

characteristic: ploidy

text: asexual

characteristic: propagation

text: MIGS Eukaryotic sample from Trichosporon inkin


text: USDA-ARS

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: SRA accession

text: USDA-ARS CHBRC Anderson Lab

characteristic: biomaterial provider

text: ligustica

characteristic: breed

text: royal jelly and crops

text: honey bee colonies

characteristic: isolation source

text: bee metagenome

characteristic: organism

text: female

characteristic: sex

text: royal jelly and crops

characteristic: tissue

text: Model organism or animal sample from bee metagenome


text: USDA-ARS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: USDA-ARS CHBRC Anderson Lab

text: ligustica

text: crops sampled from nurse workers in colony 5

characteristic: description

text: honey bee colonies

text: bee metagenome

text: female

text: crops and hypopharyngeal glands

characteristic: title


Sulfitobacter sp. H3 (MCCC 1A00686)

characteristic: External Id

text: The Third Institute of State Oceanic Administration (SOA)

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

characteristic: culture collection

text: Atlantic Ocean: North area

characteristic: geo loc name

text: toxic marine diatom Pseudo-nitzschia multiseries

text: Pseudosulfitobacter pseudonitzschiae

characteristic: strain

text: Microbe sample from Pseudosulfitobacter pseudonitzschiae

text: type strain of Sulfitobacter pseudonitzschiae

characteristic: type material


text: Laboratory of Gene Technology, Afdeling Gentechnologie, KU Leuven

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Directional

characteristic: directional reads

text: PAO1 Krilov

characteristic: host strain

text: Infected

characteristic: infection

text: Phikzvirus phiKZ

characteristic: organism

text: Cells infected with PhiKZ phage

text: Early Infection

characteristic: stage of infection


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Directional

text: PAO1 Krilov

text: Infected

text: Phikzvirus phiKZ

text: Cells infected with PhiKZ phage

text: Middle Infection


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Non-Directional

text: PAO1 Krilov

text: Infected

text: Phikzvirus phiKZ

text: Cells infected with PhiKZ phage

text: Middle Infection

characteristic: title


text: live

text: Generic

text: Non-Directional

text: PAO1 Krilov

text: Infected

text: Phikzvirus phiKZ

text: Cells infected with PhiKZ phage

text: Late Infection


text: live

text: Generic

text: Directional

text: PAO1 Krilov

text: Infected

text: Phikzvirus phiKZ

text: Cells infected with PhiKZ phage

text: Late Infection


text: John T. Lis, Moleular Biology and Genetics, Cornell University

text: live

text: Generic

text: Hhex-venus (HV) ES cells

characteristic: cell type

text: anti-BrU (sc-32323-ac)

characteristic: gro-seq antibody

text: GRO-Seq

characteristic: library strategy

text: Mus musculus

text: nascent RNA

characteristic: sample type

text: Primitive endoderm-primed

text: HV+S+


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Hhex-venus (HV) ES cells

text: anti-BrU (sc-32323-ac)

text: GRO-Seq

text: Mus musculus

text: nascent RNA

text: differentiated endoderm

text: HV+S-


text: live

text: Generic

text: Hhex-venus (HV) ES cells

text: anti-BrU (sc-32323-ac)

text: GRO-Seq

text: Mus musculus

text: nascent RNA

text: Epiblast-primed

text: HV-S+


text: UNIPAMPA

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: ACCGGTATGTACCC

characteristic: barcode

characteristic: collection date

text: beebread Col.1

characteristic: description

characteristic: env biome

characteristic: env feature

text: Brazil: Rio Grande do Sul

characteristic: geo loc name

text: beebread

characteristic: host

text: 30.24 S 53.52 W

characteristic: lat lon

text: bee metagenome


characteristic: External Id

text: UNIPAMPA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.host-associated

text: AATTGTGTCGGACC

text: beebread Col.2

text: Brazil: Rio Grande do Sul

text: beebread

text: 30.24 S 53.52 W

text: bee metagenome

characteristic: organism


text: UNIPAMPA

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission package

text: TGCATACACTGGCC

text: beebread Col.3

text: Brazil: Rio Grande do Sul

text: beebread

text: 30.24 S 53.52 W

text: bee metagenome

characteristic: title


text: UNIPAMPA

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: AGTCGAACGAGGCC

characteristic: barcode

text: beebread Col.4

text: Brazil: Rio Grande do Sul

text: beebread

text: 30.24 S 53.52 W

text: bee metagenome


text: UNIPAMPA

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: ACCAGTGACTCACC

characteristic: collection date

text: beebread Col.5

text: Brazil: Rio Grande do Sul

text: beebread

text: 30.24 S 53.52 W

text: bee metagenome


text: UNIPAMPA

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: GAATACCAAGTCCC

text: beebread Col.6

characteristic: description

text: Brazil: Rio Grande do Sul

text: beebread

text: 30.24 S 53.52 W

text: bee metagenome


text: UNIPAMPA

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: GTAGATCGTGTACC

text: beebread Col.7

characteristic: env biome

text: Brazil: Rio Grande do Sul

text: beebread

text: 30.24 S 53.52 W

text: bee metagenome


text: UNIPAMPA

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: TAACGTGTGTGCCC

text: beebread Col.8

characteristic: env feature

text: Brazil: Rio Grande do Sul

text: beebread

text: 30.24 S 53.52 W

text: bee metagenome


text: UNIPAMPA

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: CATTATGGCGTGCC

text: beebread Col.9

text: Brazil: Rio Grande do Sul

characteristic: geo loc name

text: beebread

text: 30.24 S 53.52 W

text: bee metagenome


text: UNIPAMPA

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: CCAATACGCCTGCC

text: beebread Col.10

text: Brazil: Rio Grande do Sul

text: beebread

characteristic: host

text: 30.24 S 53.52 W

text: bee metagenome


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

characteristic: body site

text: GRU

text: xenograft

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

characteristic: study design

text: Leukemia, Myeloid, Acute

characteristic: study disease

text: Genomics of Acute Myeloid Leukemia

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Leukemia, Myeloid, Acute tumor DNA sample from bone_marrow/spleen of a human male participant in the dbGaP study Genomics of Acute Myeloid Leukemia


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: skin

text: GRU

text: solid tissue normal

text: No

text: Homo sapiens

characteristic: organism

text: male

text: Tumor vs. Matched-Normal

text: Leukemia, Myeloid, Acute

text: Genomics of Acute Myeloid Leukemia

text: Yes

text: Non-tumor DNA sample from skin of a human male participant in the dbGaP study Genomics of Acute Myeloid Leukemia

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

characteristic: body site

text: GRU

text: tumor

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

text: Leukemia, Myeloid, Acute

text: Genomics of Acute Myeloid Leukemia

text: Yes

text: Leukemia, Myeloid, Acute tumor DNA sample from bone_marrow of a human male participant in the dbGaP study Genomics of Acute Myeloid Leukemia


characteristic: External Id

text: UMR1290 BIOGER, INRA

characteristic: INSDC center name

text: live

text: Generic

text: sensitive

characteristic: fungicide-phenotype

text: Zymoseptoria tritici

text: wheat

characteristic: strain

text: sensitive control 1 replicate 1

text: culture from epitype of Septoria tritici

characteristic: type-material


text: UMR1290 BIOGER, INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: sensitive

text: Zymoseptoria tritici

text: wheat

text: sensitive control 1 replicate 3


text: UMR1290 BIOGER, INRA

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: sensitive

text: Zymoseptoria tritici

characteristic: organism

text: wheat

text: sensitive control 1 replicate 2

characteristic: title


text: Southwest University for Nationalities

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China: Sichuan

characteristic: geo loc name

text: goat

characteristic: isolation source

text: Mesomycoplasma ovipneumoniae

text: Microbe sample from Mesomycoplasma ovipneumoniae


characteristic: External Id

text: Southwest University for Nationalities

text: live

text: Microbe, viral or environmental

characteristic: culture collection

text: Australia: Queensland

text: sheep

characteristic: host

text: Mesomycoplasma ovipneumoniae ATCC 29419

text: Microbe sample from Mesomycoplasma ovipneumoniae ATCC 29419

text: type strain of Mycoplasma ovipneumoniae

characteristic: type material


Streptomyces aureofaciens ATCC 10762

text: University of Nebraska - Lincoln

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: ATCC

characteristic: biomaterial provider

characteristic: culture-collection

text: USA: Missouri

text: Timothy field soil

text: Kitasatospora aureofaciens

text: ATCC 10762

characteristic: strain

text: Streptomyces aureofaciens ATCC 10762

text: type strain of Streptomyces aureofaciens


text: environmental-water

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: FLUFL

characteristic: collected by

text: USA:GA

text: water pond

text: pond water:ENVO_00002228

characteristic: ontological term

text: Salmonella enterica

text: environmental

characteristic: source type

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: environmental-water

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: FLUFL

characteristic: collection date

text: USA:GA

characteristic: geo loc name

text: sediment

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: environmental

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Peripheral blood

characteristic: body site

text: HMB-IRB-MDS

text: Buffy coat

characteristic: histological type

text: No

characteristic: is tumor

text: Methylation (CpG)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Peripheral blood of a human female participant in the dbGaP study Framingham Offspring Exam 8 and Generation 3 Exam 2 450K Array DNA Methylation Study


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: Peripheral blood

text: HMB-IRB-MDS

text: Buffy coat

text: No

text: Methylation (CpG)

text: Homo sapiens

characteristic: organism

text: male

text: Prospective Longitudinal Cohort

text: Non-tumor DNA sample from Peripheral blood of a human male participant in the dbGaP study Framingham Offspring Exam 8 and Generation 3 Exam 2 450K Array DNA Methylation Study


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Peripheral blood

text: HMB-IRB-MDS

text: Buffy coat

text: No

text: Methylation (CpG)

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

text: Framingham Offspring Exam 8 and Generation 3 Exam 2 450K Array DNA Methylation Study

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

text: Peripheral blood

characteristic: body site

text: HMB-IRB-MDS

text: Buffy coat

characteristic: histological type

text: No

characteristic: is tumor

text: Methylation (CpG)

characteristic: molecular data type

text: Homo sapiens

text: male

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: Peripheral blood

text: HMB-IRB-NPU-MDS

text: Buffy coat

text: No

text: Methylation (CpG)

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: Peripheral blood

text: HMB-IRB-NPU-MDS

text: Buffy coat

text: No

text: Methylation (CpG)

text: Homo sapiens

characteristic: organism

text: male

text: Prospective Longitudinal Cohort


text: University of Oklahoma

text: live

text: MIGS/MIMS/MIMARKS.microbial

text: MIGS.ba

characteristic: collection date

characteristic: depth

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

characteristic: elev

text: hot spring

characteristic: env biome

text: hydrographic feature

characteristic: env feature

text: microbial mat material

text: TRUE

characteristic: environmental sample

text: USA: California

characteristic: geo loc name

text: microbial mat from hot spring

characteristic: isolation source

text: 37.694518 N 118.816545 W

characteristic: lat lon

text: hot springs metagenome

characteristic: metagenome source

text: TRUE

characteristic: metagenomic

text: [Candidatus Thermochlorobacteriaceae] bacterium GBChlB

text: aerobic

text: GBChlB

characteristic: strain

text: Chlorobium binned from metagenome at LHC1

characteristic: title


characteristic: External Id

text: dairy

characteristic: IFSAC Category

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: NY

characteristic: collected by

text: USA:NY

text: taleggio cheese

text: taleggio cheese:FOODON_03310935

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: FDA Center for Food Safety and Applied Nutrition

characteristic: sequenced by

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: environmental-water

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: collection date

text: USA:NC

characteristic: geo loc name

text: sediment stream

characteristic: isolation source

text: stream sediment:ENVO_00002127

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: environmental


characteristic: External Id

text: environmental-water

text: FDA/CFSAN

text: live

text: Pathogen.env

text: USA:NC

text: water stream

text: water:CHEBI_15377, stream:ENVO_00000023

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: strain

characteristic: title


text: environmental-water

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: USA:VA

text: water

text: Salmonella enterica

text: environmental


text: environmental

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: fda lab id

text: USA:WA

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

text: Listeria monocytogenes

text: GenomeTrakr

text: environmental


text: Bonasio, Cell and Developmental Biology, University of Pennsylvania

text: live

text: Generic

characteristic: NCBI submission package

characteristic: cell line

text: Flag-HA-OneSTrEP (N-terminal)

characteristic: epitope tag

text: Homo sapiens

text: N3 (empty vector), no dox

characteristic: transgene


text: live

text: Generic

text: HA - Abcam ab9110

characteristic: antibody

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens

characteristic: organism

text: N3 (empty vector), no dox


characteristic: External Id

text: live

text: Generic

text: SCML2 (in-house)

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens

text: N3 (empty vector), no dox


text: live

text: Generic

text: PCGF4 - Bethyl A301-694A

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens

characteristic: title

text: N3 (empty vector), no dox


characteristic: INSDC center name

text: live

text: Generic

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens


characteristic: INSDC first public

text: live

text: Generic

text: HA - Abcam ab9110

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens


characteristic: INSDC last update

text: live

text: Generic

text: SCML2 (in-house)

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens


characteristic: INSDC secondary accession

text: live

text: Generic

text: PCGF4 - Bethyl A301-694A

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens


text: live

characteristic: INSDC status

text: Generic

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens

text: N3-SCML2A∆RBR (256-330)


text: live

text: Generic

characteristic: NCBI submission model

text: HA - Abcam ab9110

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens

text: N3-SCML2A∆RBR (256-330)


text: live

text: Generic

characteristic: SRA accession

text: SCML2 (in-house)

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens

text: N3-SCML2A∆RBR (256-330)


text: live

text: Generic

text: PCGF4 - Bethyl A301-694A

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens

text: N3-SCML2A∆RBR (256-330)


text: live

text: Generic

text: HA - Abcam ab9110

text: Flag-HA-OneSTrEP (N-terminal)

text: Homo sapiens

text: N3-SCML2A∆RBR (256-330)


text: live

text: Generic

text: Homo sapiens


text: live

text: Generic

text: HA (abcam ab9110)

text: Homo sapiens

text: N3 (empty vector)


text: live

text: Generic

text: HA (abcam ab9110)

text: Homo sapiens


text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: collection date

text: Portugal

characteristic: geo loc name

text: serpa cheese

characteristic: isolation source

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

characteristic: strain


text: dairy

characteristic: IFSAC Category

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

characteristic: fda lab id

text: France

text: roquefort cheese

text: roquefort cheese:FOODON_00002424

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: food

characteristic: source type


characteristic: External Id

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: FDA

text: Italy

text: toma piemontese cheese

text: Salmonella enterica

text: GenomeTrakr

characteristic: title


text: FDA/CFSAN

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: collection date

text: France

characteristic: geo loc name

text: secret du couvent cheese

text: Salmonella enterica

text: GenomeTrakr


text: veterinary clinical/research| cow

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA Contracted Laboratory

text: USA:WA

text: bovine necropsy intestine

characteristic: isolation source

text: bovine:FOODON_03414374| necropsy:MMO_0000344| intestine:UBERON_0000160

text: Salmonella enterica

text: animal

characteristic: strain


text: cow

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:WA

text: bovine lung

text: bovine:FOODON_03414374, lung:UBERON_0002048

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

characteristic: serovar

text: animal

characteristic: source type


characteristic: External Id

text: animal feed

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:WA

text: bovine bulk feed

text: bovine:foodon_03414374, food product for animal:foodon_03309997

text: Salmonella enterica

text: environmental


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A060 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France

text: Populus trichocarpa x P. deltoides cv. 'Beaupre

characteristic: host

text: obtained through selfing on larch (Larix decidua)

characteristic: isolate

text: 49.751 N 3.363 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

text: MIGS Eukaryotic sample from Melampsora laricis-populina

characteristic: title


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: MIGS.eu

characteristic: NCBI submission package

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIGS:6.0

text: eukaryote

characteristic: investigation type

text: Cubamyces sp. BRFM 1775

characteristic: organism

text: Leiotrametes sp. BRFM 1775

characteristic: project name

text: BRFM 1775

characteristic: strain

text: Leiotrametes sp. CIRM-BRFM 1775


text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of parental strain 98AG31

characteristic: description

text: collected from an infected poplar crop

text: collected from an infected poplar crop

text: poplar leaf

text: 101 Mb

text: France: Moy-de-l'Aisne

characteristic: geo loc name

text: Populus trichocarpa x P. deltoides cv. Beaupre

text: collected from infected poplar leaf

text: 49.751 N 3.363 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A007 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: host

characteristic: isolate

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

characteristic: title


characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A030 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: Populus trichocarpa x P. deltoides cv. 'Beaupre'

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of offspring 98AG31-A050 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A008 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: geo loc name

characteristic: host

characteristic: isolate

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A004 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

characteristic: title


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A051 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual


text: INRA

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of offspring 98AG31-A084 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A078 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: geo loc name

characteristic: host

characteristic: isolate

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A133 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

characteristic: title


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A015 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of offspring 98AG31-A016 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A042 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: geo loc name

characteristic: host

characteristic: isolate

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A025 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: obtained through selfing on larch (Larix decidua)

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

characteristic: title


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A035 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual

text: MIGS Eukaryotic sample from Melampsora laricis-populina


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of offspring 98AG31-A130 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A028 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: geo loc name

characteristic: host

characteristic: isolate

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A102 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: Populus trichocarpa x P. deltoides cv. 'Beaupre'

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

characteristic: title


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A037 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of offspring 98AG31-A006 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A043 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: geo loc name

characteristic: host

characteristic: isolate

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A039 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

characteristic: title


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A014 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of offspring 98AG31-A018 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A020 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: geo loc name

characteristic: host

characteristic: isolate

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A033 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

characteristic: title


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A019 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of offspring 98AG31-A002 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A013 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: geo loc name

characteristic: host

text: obtained through selfing on larch (Larix decidua)

characteristic: isolate

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A021 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

text: MIGS Eukaryotic sample from Melampsora laricis-populina

characteristic: title


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A054 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of offspring 98AG31-A049 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A040 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: geo loc name

text: Populus trichocarpa x P. deltoides cv. 'Beaupre'

characteristic: host

characteristic: isolate

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A046 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

characteristic: title


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A053 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of offspring 98AG31-A149 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A038 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: geo loc name

characteristic: host

characteristic: isolate

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A026 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

characteristic: title


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A044 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of offspring 98AG31-A023 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A153 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: geo loc name

characteristic: host

characteristic: isolate

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A113 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

characteristic: title


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A112 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Complete genome sequence of offspring 98AG31-A036 obtained by selfing of strain 98AG31 of Melampsora larici-populina

characteristic: description

text: obtained in laboratory

characteristic: env biome

text: obtained in laboratory

characteristic: env feature

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: obtained through selfing on larch (Larix decidua)

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual


characteristic: External Id

text: INRA

characteristic: INSDC center name

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A024 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

characteristic: estimated size

text: France: Champenoux

characteristic: geo loc name

characteristic: host

characteristic: isolate

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

text: diploid

text: eukaryote: asexual

text: MIGS Eukaryotic sample from Melampsora laricis-populina


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Complete genome sequence of offspring 98AG31-A141 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

characteristic: title


text: INRA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: Complete genome sequence of offspring 98AG31-A117 obtained by selfing of strain 98AG31 of Melampsora larici-populina

text: obtained in laboratory

text: obtained in laboratory

text: poplar leaf

text: 101 Mb

text: France: Champenoux

text: 48.751 N 6.342 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual


Rhodococcus defluvii

characteristic: External Id

text: Northumbria University

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: DSM 45893

characteristic: biomaterial provider

text: Peter Kaempfer

characteristic: collected by

characteristic: collection date

text: A new member of genus Rhodococcus isolated from waste-water treatment bioreactor by Kaempfer et al., 2014.

characteristic: description

text: Germany: Aachen

text: Waste-water bioreactor

characteristic: isolation source

text: Prescottella defluvii

characteristic: strain

text: Microbe sample from Prescottella defluvii

text: type strain of Rhodococcus defluvii

characteristic: type material


text: INRA

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Melampsora larici-populina is a fungal pathogen responsible for foliar rust disease on poplar trees causing important damages worldwide and particularly in plantations of Northern Europe. The reference genome of the isolate 98AG31 was previously sequenced by Sanger using a whole genome shotgun strategy revealing a large genome of 101 megabases containing 16,399 predicted genes including small secreted proteins (SSP) genes representing candidate poplar rust effectors. In order to explore the genetic variation of the poplar rust fungus at the genome scale, we used an Illumina-based resequencing approach and sequenced at a higher sequencing depth the genome of 15 isolates collected over the past 20 years throughout the French territory and presenting distinct virulence profiles, including the reference isolate 98AG31. Comparison to the reference genome sequence revealed a high level of polymorphism, with more than 611,824 single-nucleotide polymorphism (SNP) positions overall. We report here on the SNPs and insertions/deletions found in coding and non-coding regions as well as missing regions revealed by coverage and sequencing depth analysis between isolates. Based on the accumulation of non-synonymous substitutions in coding sequences and the amounts of synonymous and non-synonymous polymorphisms (i.e. PN/PS), we identify candidate genes, including those encoding SSPs that may be involved in fungal pathogenesis.

text: poplar nursery

characteristic: env biome

text: poplar nursery

characteristic: env feature

text: plplar leaf

characteristic: estimated size

text: France: Charrey-sur-Saone

characteristic: geo loc name

text: Populus euramericana Robusta

characteristic: host

characteristic: isolate

text: 47.0886 N 5.1530 E

characteristic: lat lon

text: Melampsora laricis-populina

text: diploid

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

text: Melampsora larici-populina


characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: NCBI submission package

characteristic: SRA accession

text: wild poplar

text: wild poplar

text: poplar leaf

text: France: Mirabeau

text: Populus nigra

text: 43.6915 N 5.6724 E

text: Melampsora laricis-populina

characteristic: organism

text: diploid

text: eukaryote: asexual

text: Melampsora larici-populina

characteristic: title


name: Mycoplasma hyopneumoniae 7448 transcriptome

text: National Laboratory of Scientific Computation

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Transcriptome sample from Mycoplasma hyopneumoniae strain 7448 present in swine respiratory tract and etiological agent of pneumonia.

characteristic: description

text: Brazil

text: Sus scrofa

text: respiratory system

text: Swine respiratory tract

characteristic: isolation source

text: Mesomycoplasma hyopneumoniae

characteristic: strain

text: Transcriptome sample from Mycoplasma hyopneumoniae 7448


name: Mycoplasma flocculare ATCC 27716 transcriptome

text: live

text: Microbe, viral or environmental

text: Transcriptome sample from Mycoplasma flocculare ATCC 27716 present in swine respiratory tract but not associated with diseases.

text: Brazil

characteristic: geo loc name

text: Sus scrofa

characteristic: host

text: respiratory system

text: Swine respiratory tract

text: Mesomycoplasma flocculare ATCC 27716

text: ATCC 27716


name: Mycoplasma hyorhinis ATCC 17981 transcriptome

characteristic: External Id

text: live

text: Microbe, viral or environmental

text: Transcriptome sample from Mycoplasma hyorhinis ATCC 17981 present in swine respiratory tract and associated with serofibrinous, fibrinopurulent polyserositis and arthritis.

text: Brazil

text: Sus scrofa

text: respiratory system

text: Swine respiratory tract

text: Mesomycoplasma hyorhinis ATCC 17981

text: ATCC 17981

text: type strain of Mycoplasma hyorhinis

characteristic: type material


YKB

text: Los Alamos National Laboratory

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: Tax ID

text: Yersinia rochesterensis

text: ATCC 33639

text: originally submitted as Yersinia kristensenii, taxname changed based on ANI results

text: Microbe sample from Yersinia rochesterensis


text: chicken

characteristic: IFSAC Category

text: FDA/CFSAN

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

characteristic: collected by

characteristic: fda lab id

text: USA: GA

text: chicken breast

text: chicken breast:FOODON_00002703

characteristic: ontological term

text: Salmonella enterica

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: herbs

text: FDA/CFSAN

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: Egypt

text: parsley

characteristic: isolation source

text: parsley leaf:FOODON_00002942

text: Salmonella enterica

characteristic: organism

text: food

characteristic: title


FDA860413 C1-A

characteristic: External Id

text: fish

text: FDA/CFSAN

characteristic: INSDC center name

text: live

text: Pathogen.env

text: FDA

text: 860413 C1-A

text: China

characteristic: geo loc name

text: whole tilapia fish

text: tilapia:FOODON_03412434, whole:FOODON_03430131

text: Salmonella enterica

characteristic: pfge primary enzyme pattern

text: food

text: FDA860413 C1-A

characteristic: strain


FDA860413 C1-C

text: fish

characteristic: IFSAC Category

text: FDA/CFSAN

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

text: 860413 C1-C

text: China

text: whole tilapia fish

text: Salmonella enterica

text: food

text: FDA860413 C1-C


FDA861020 C2-I

text: herbs

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

characteristic: collected by

text: 861020 C2-I

characteristic: fda lab id

text: Costa Rica

text: fresh basil

text: food fresh:FOODON_00002457, basil food product:FOODON_00003044

text: Salmonella enterica

text: food

text: FDA861020 C2-I


FDA863657 C1-A

text: multi-ingredient, aquatic animals

text: FDA/CFSAN

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA

text: 863657 C1-A

text: China

text: frozen seafood mixture

text: seafood frozen:FOODON_03305677, mixture:CHEBI_60004

characteristic: ontological term

text: Salmonella enterica

text: food

characteristic: source type

text: FDA863657 C1-A


FDA864057 1-TT/HE-1

text: food, other (flavoring or seasoning)

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 864057 1-TT/HE-1

text: Pakistan

text: turmeric powder

characteristic: isolation source

text: turmeric ground:FOODON_03310841, food powdered:FOODON_00003007

text: Salmonella enterica

text: food

text: FDA864057 1-TT/HE-1


FDA864495 1-TT/BS-2

characteristic: External Id

text: mollusks (non-bi-valve)

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: 864495 1-TT/BS-2

text: Taiwan

text: frozen illex squid tube

text: frozen:PATO_0001985, illex:NCBITAXON_6627, squid:FOODON_03411205, tube:UBERON_0000025

text: Salmonella enterica

characteristic: organism

text: food

text: FDA864495 1-TT/BS-2

characteristic: title


name: Freshwater and sediment microbial communities from dead zone in Lake Erie, USA - itags

text: Environmental | Aquatic | Freshwater | Lentic | Unclassified

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: MIMS.me

characteristic: SRA accession

text: Freshwater and sediment ecosystem from dead zone in Lake Erie, USA.

characteristic: description

text: Freshwater

characteristic: env biome

text: Water

characteristic: env feature

text: Freshwater and sediment

text: Canada: Lake Erie

characteristic: geo loc name

text: Freshwater lake

text: 41.841 N 82.917 W

characteristic: lat lon

text: freshwater metagenome

text: Freshwater and sediment microbial communities from dead zone in Lake Erie, Canada - itags


text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:6.0

text: eukaryote

characteristic: investigation type

text: Ceraceosorus guamensis

text: Ceraceosorus sp. MCA 4658

characteristic: project name

text: MCA 4658

characteristic: strain

text: Ceraceosorus sp. MCA 4658

text: culture from holotype of Ceraceosorus guamensis

characteristic: type material


characteristic: External Id

text: multi-ingredient, crustaceans

characteristic: IFSAC Category

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: Spain

text: whole seasoned crayfish

characteristic: isolation source

text: whole:FOODON_03430131, food (seasoned):FOODON_00002733, crawfish or crayfish:FOODON_03412686

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

characteristic: pfge primary enzyme pattern

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Listeria monocytogenes

characteristic: title


text: multi-ingredient, crustaceans

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: Spain

characteristic: geo loc name

text: crayfish cooked seasoned

text: crayfish cooked:FOODON_03316422, food seasoned:FOODON_00002733

text: Listeria monocytogenes

text: food


characteristic: External Id

text: fish

characteristic: IFSAC Category

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: Norway

text: smoked salmon

text: salmon (smoked):FOODON_03301805

text: Listeria monocytogenes

text: food

characteristic: strain


text: fish

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: collection date

text: Chile

text: smoked salmon

text: salmon (smoked):FOODON_03301805

text: Listeria monocytogenes

text: food


FDA667599 179

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: 667599 179

characteristic: fda lab id

text: USA: WA

text: environmental sponges

characteristic: isolation source

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Pacific Northwest Laboratory

characteristic: sequenced by

text: FDA667599 179


text: multi-ingredient, root/underground (tubers)

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: USA: PA

text: potato salad

text: potato salad:FOODON_03304708

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

characteristic: pfge primary enzyme pattern

text: food

characteristic: source type

characteristic: title


text: environmental

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: USA: IN

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

text: Listeria monocytogenes

text: environmental


characteristic: External Id

text: environmental

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

text: USA: CA

characteristic: geo loc name

text: environmental swab

text: Listeria monocytogenes

text: environmental

characteristic: strain


FDA664208 24-4

text: environmental

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 664208 24-4

characteristic: fda lab id

text: USA: MA

text: environmental swab

characteristic: isolation source

text: Listeria monocytogenes

text: environmental

text: FDA664208 24-4


FDA664208 26

text: environmental

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: 664208 26

text: USA: MA

text: environmental swab

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

characteristic: pfge primary enzyme pattern

text: environmental

text: FDA664208 26


FDA664208 36-1

text: environmental

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: 664208 36-1

text: USA: MA

text: environmental swab

text: Listeria monocytogenes

text: environmental

characteristic: source type

text: FDA664208 36-1

characteristic: title


FDA664208 36-2

text: environmental

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA

text: 664208 36-2

text: USA: MA

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA664208 36-2


FDA664208 38-1

characteristic: External Id

text: environmental

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: 664208 38-1

text: USA: MA

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA664208 38-1


FDA664208 55-1

text: environmental

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

text: 664208 55-1

text: USA: MA

characteristic: geo loc name

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA664208 55-1


FDA664208 58-1

text: environmental

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 664208 58-1

characteristic: fda lab id

text: USA: MA

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA664208 58-1

characteristic: strain


FDA672595 104-1

text: environmental

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA

text: 672595 104-1

text: USA: CA

text: environmental swab

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: FDA Center for Food Safety and Applied Nutrition

characteristic: sequenced by

text: environmental

text: FDA672595 104-1


FDA780463 7-1

text: environmental

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA

text: 780463 7-1

text: USA: CA

text: environmental swab

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: environmental

characteristic: source type

text: FDA780463 7-1

characteristic: title


FDA780463 1-1

characteristic: External Id

text: environmental

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

characteristic: collected by

characteristic: collection date

text: 780463 1-1

text: USA: CA

characteristic: geo loc name

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA780463 1-1


FDA780463 2-1

text: environmental

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: 780463 2-1

characteristic: fda lab id

text: USA: CA

text: environmental swab

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: environmental

text: FDA780463 2-1

characteristic: strain


FDA780463 3-1

text: environmental

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA

text: 780463 3-1

text: USA: CA

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA780463 3-1


FDA780463 6-1

text: environmental

text: FDA/CFSAN

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA

text: 780463 6-1

text: USA: CA

text: environmental swab

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: environmental

characteristic: source type

text: FDA780463 6-1


FDA780463 9-1

characteristic: External Id

text: environmental

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

text: 780463 9-1

text: USA: CA

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA780463 9-1

characteristic: title


FDA805694 1-1

text: beans

characteristic: IFSAC+ category

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: FDA

characteristic: collected by

text: 805694 1-1

text: USA: CA

text: mung bean sprout

text: bean sprout:foodon_00002576, mung bean (whole):foodon_03301275

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|San Francisco Laboratory

characteristic: sequenced by

text: FDA805694 1-1


FDA680736 18-RLM A

text: environmental

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 680736 18-RLM A

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FDA664208 32-1

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text: FDA/CFSAN

text: live

text: Pathogen.env

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text: 664208 32-1

text: USA: MA

text: environmental swab

text: Listeria monocytogenes

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text: FDA664208 32-1


FDA619420-30 Ox

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characteristic: IFSAC+ Category

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text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 619420-30 Ox

characteristic: fda lab id

text: USA: MD

text: environmental swab

text: Listeria monocytogenes

text: environmental

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FDA619420-30 Pal

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text: FDA

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characteristic: geo loc name

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characteristic: collection date

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characteristic: geo loc name

text: creamy dutch potato salad

characteristic: isolation source

text: potato salad:FOODON_03304708, dutch:ANCESTRO_0320

characteristic: ontological term

text: Listeria monocytogenes

text: food


FDA673700 16-5

text: environmental

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

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text: 673700 16-5

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text: Listeria monocytogenes

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text: FDA673700 16-5

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text: live

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text: Pathogen.env

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text: FDA

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text: USA: PA

text: amish potato salad with egg

text: potato salad (with egg):FOODON_03307696, amish:ANCESTRO_0316

text: Listeria monocytogenes

text: food


characteristic: External Id

text: fruits

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: USA: VA

text: mixed fruit

text: Listeria monocytogenes

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text: food

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characteristic: title


text: multi-ingredient

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text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

characteristic: fda lab id

text: USA: TX

characteristic: geo loc name

text: double cheeseburger

text: Listeria monocytogenes

text: food


text: multi-ingredient, crustaceans

text: FDA/CFSAN

characteristic: INSDC center name

text: live

text: Pathogen.env

text: FDA

text: China

text: frozen cooked crawfish

characteristic: isolation source

text: fish frozen:FOODON_03301083, crawfish or crayfish:FOODON_03412686, food (cooked):FOODON_00001181

characteristic: ontological term

text: Listeria monocytogenes

text: food


text: multi-ingredient, crustaceans

text: FDA/CFSAN

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

text: China

text: frozen whole cooked crawfish

text: fish (frozen):FOODON_03301083, whole:FOODON_03430131, food (cooked):FOODON_00001181, crawfish or crayfish:FOODON_03412686

text: Listeria monocytogenes

characteristic: organism

text: food


text: multi-ingredient, mollusks (non-bi-valve)

text: FDA/CFSAN

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

text: Korea: Republic Of (South)

text: seasoned cuttlefish

text: food (seasoned):FOODON_00002733, cuttlefish:FOODON_03411644

text: Listeria monocytogenes

text: food

characteristic: strain


FDA514702 3

characteristic: External Id

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

characteristic: collected by

text: 514702 3

text: Korea: Republic Of (South)

text: seasoned squid

text: food (seasoned):FOODON_00002733, squid:FOODON_03411205

text: Listeria monocytogenes

text: food

text: FDA514702 3


text: environmental

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: USA: GA

text: environmental swab

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: environmental

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characteristic: title


text: multi-ingredient

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA

characteristic: collection date

characteristic: fda lab id

text: Chile

characteristic: geo loc name

text: whole cooked mussel

text: whole:FOODON_03430131, mussel:FOODON_03411223, food (cooked):FOODON_00001181

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

text: food


FDA269616 A

text: environmental-factory/production facility

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA

text: 269616 A

text: USA: CA

text: marble table

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: environmental

text: FDA269616 A

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


FDA269616 F

characteristic: External Id

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

characteristic: collected by

text: 269616 F

text: USA: CA

text: marble table

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: environmental

text: FDA269616 F

characteristic: strain


FDA594876 2-5

text: environmental

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 594876 2-5

characteristic: fda lab id

text: USA: GA

characteristic: geo loc name

text: environmental swab

text: Listeria monocytogenes

text: environmental

characteristic: source type

text: FDA594876 2-5

characteristic: title


FDA594876 4-5

text: environmental

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

text: 594876 4-5

text: USA: GA

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA594876 4-5


FDA280023 7b

text: pork

characteristic: IFSAC Category

text: FDA/CFSAN

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA

text: 280023 7b

text: USA: CA

text: ham slice

characteristic: isolation source

text: ham food product:FOODON_00002502, sliced:FOODON_03430137

characteristic: ontological term

text: Listeria monocytogenes

text: food

text: FDA280023 7b


FDA284193 G

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characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

text: 284193 G

text: USA: CA

text: environmental swab

text: Listeria monocytogenes

characteristic: organism

text: environmental

text: FDA284193 G


FDA640389 29-1

text: environmental

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

characteristic: collected by

text: 640389 29-1

text: USA: TN

text: environmental swab

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: environmental

text: FDA640389 29-1

characteristic: strain


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text: live

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characteristic: collection date

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text: environmental

characteristic: source type


text: vegetable row crops (leafy)

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: Outbreak

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text: kimchee

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text: food

characteristic: title


characteristic: External Id

text: multi-ingredient

characteristic: IFSAC Category

text: FDA/CFSAN

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA

text: USA: OH

text: macaroni salad

characteristic: isolation source

text: macaroni salad:FOODON_03304693

characteristic: ontological term

text: Listeria monocytogenes

text: food


text: fish

text: FDA/CFSAN

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text: Pathogen.env

characteristic: NCBI submission model

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text: FDA

characteristic: collected by

text: Norway

text: smoked norwegian salmon

text: norwegian:ANCESTRO_0380, salmon (smoked):FOODON_03301805

text: Listeria monocytogenes

characteristic: organism

text: food


text: multi-ingredient

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

characteristic: fda lab id

text: USA

text: sandwich

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characteristic: pfge primary enzyme pattern

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text: pork

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characteristic: INSDC center name

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text: live

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characteristic: geo loc name

text: ham

text: ham food product:FOODON_00002502

text: Listeria monocytogenes

text: food

characteristic: source type


characteristic: External Id

text: dairy

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

text: USA: CA

text: cheddar cheese

text: cheddar cheese:FOODON_03302458

text: Listeria monocytogenes

text: food

characteristic: title


text: dairy

characteristic: IFSAC Category

text: FDA/CFSAN

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA

text: USA: CA

text: provolone cheese

characteristic: isolation source

text: provolone cheese:FOODON_03302916

text: Listeria monocytogenes

text: food


text: multi-ingredient, dairy, turkey

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: USA: CA

text: turkey and cheddar sandwich

text: turkey sandwich:FOODON_03310573, cheddar cheese:FOODON_03302458

characteristic: ontological term

text: Listeria monocytogenes

text: food


text: multi-ingredient, pork, turkey

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: collection date

text: USA: CA

text: ham and turkey sandwich

text: turkey ham:FOODON_03310971, ham sandwich:FOODON_03307807

text: Listeria monocytogenes

characteristic: organism

text: food


FDA574833 1-1

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text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: Outbreak

text: FDA

text: 574833 1-1

characteristic: fda lab id

text: USA: NJ

text: white cheese

text: cheese white:FOODON_03316541

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: food

text: FDA574833 1-1

characteristic: strain


FDA574833 2-6

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text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA

text: 574833 2-6

text: USA: NJ

characteristic: geo loc name

text: white cheese

text: cheese white:FOODON_03316541

text: Listeria monocytogenes

text: food

characteristic: source type

text: FDA574833 2-6


FDA594878 32-2

characteristic: External Id

text: environmental

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

text: 594878 32-2

text: USA: GA

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

text: Listeria monocytogenes

text: environmental

text: FDA594878 32-2

characteristic: title


FDA594878 54-2

text: environmental

text: FDA/CFSAN

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: 594878 54-2

text: USA: GA

text: environmental swab

characteristic: isolation source

text: Listeria monocytogenes

text: environmental

text: FDA594878 54-2


FDA594878 56-2

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text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: collection date

text: 594878 56-2

text: USA: GA

text: environmental swab

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: environmental

text: FDA594878 56-2


FDA594876 15-2

text: environmental

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: 594876 15-2

characteristic: fda lab id

text: USA: GA

text: environmental swab

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: environmental

text: FDA594876 15-2

characteristic: strain


FDA594878 31-2

text: environmental

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA

text: 594878 31-2

text: USA: GA

characteristic: geo loc name

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA594878 31-2


characteristic: External Id

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characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

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text: Listeria monocytogenes

text: environmental

characteristic: source type


FDA425126 14

text: environmental

text: FDA/CFSAN

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA

text: 425126 14

text: USA: CO

text: environmental swab

text: Listeria monocytogenes

text: environmental

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characteristic: title


FDA425126 18

text: environmental

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

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text: USA: CO

text: environmental swab

characteristic: isolation source

text: Listeria monocytogenes

text: environmental

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FDA425126 20A

text: environmental

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: collection date

text: 425126 20A

text: USA: CO

text: environmental swab

characteristic: ontological term

text: Listeria monocytogenes

text: environmental

text: FDA425126 20A


text: engineered seafood

characteristic: IFSAC Category

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: fda lab id

text: China

text: frozen imitation scallop

text: imitation scallop:FOODON_03305693, scallop (frozen):FOODON_03305522

text: Listeria monocytogenes

characteristic: organism

characteristic: pfge primary enzyme pattern

text: food


text: multi-ingredient, crustaceans

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA

text: China

characteristic: geo loc name

text: frozen cooked crawfish

text: Listeria monocytogenes

text: food

characteristic: strain


characteristic: External Id

text: fish

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

text: USA: FL

text: smoked salmon

text: salmon (smoked):FOODON_03301805

text: Listeria monocytogenes

text: food

characteristic: source type


FDA488471 0-1

text: environmental

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

text: 488471 0-1

text: USA: WI

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA488471 0-1

characteristic: title


FDA488471 C-1

text: environmental

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

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characteristic: collection date

text: 488471 C-1

text: USA: WI

text: environmental swab

characteristic: isolation source

text: Listeria monocytogenes

text: environmental

text: FDA488471 C-1


text: fish

characteristic: IFSAC Category

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: fda lab id

text: Canada

text: smoked sliced salmon

text: salmon (smoked):FOODON_03301805, sliced:FOODON_03430137

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: food


text: environmental

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characteristic: External Id

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text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

text: Ireland

text: smoked salmon

text: salmon (smoked):FOODON_03301805

text: Listeria monocytogenes

text: food

characteristic: source type

characteristic: strain


text: multi-ingredient, fish

text: FDA/CFSAN

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

text: Taiwan

text: frozen prepared eel

text: fish (frozen):FOODON_03301083, prepared seafood product:FOODON_00002471, eel:FOODON_03411278

text: Listeria monocytogenes

text: food

characteristic: title


text: dairy

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: collection date

text: Mexico

text: mexican white cheese

text: cheese white:FOODON_03316541, mexican:ANCESTRO_0415

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food


text: crustaceans

characteristic: IFSAC Category

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characteristic: INSDC center name

characteristic: INSDC first public

text: live

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characteristic: fda lab id

text: Korea

characteristic: geo loc name

text: frozen crab

characteristic: isolation source

text: frozen:PATO_0001985, crab:FOODON_03411335

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: food


characteristic: External Id

text: multi-ingredient, mollusks (non-bi-valve)

text: FDA/CFSAN

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

text: China

text: frozen squid salad

text: frozen:PATO_0001985, squid:FOODON_03411205, salad:FOODON_03316042

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: food

characteristic: source type

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FDA664208 60-1

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characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

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characteristic: collection date

text: 664208 60-1

text: USA: MA

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA664208 60-1


text: environmental

text: FDA/CFSAN

characteristic: INSDC center name

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text: live

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characteristic: fda lab id

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characteristic: geo loc name

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characteristic: ontological term

text: Listeria monocytogenes

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FDA664208 20-1

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characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

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text: USA: MA

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text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: environmental

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characteristic: strain

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FDA664208 57-1

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characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

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characteristic: collected by

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text: 664208 57-1

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text: Listeria monocytogenes

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characteristic: External Id

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text: live

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text: environmental swab

text: Listeria monocytogenes

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