characteristic: External Id

text: Reed College

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Plant

text: 1 month

text: Jeff Doyle

text: Jeremy Coate

text: G. tomentella (CSIRO Accession # G1403) mRNA-Seq (1/4 lane of Illumina HiSeq 2000), root tissue

text: hermaphrodite

characteristic: temp

text: Root

characteristic: tissue

text: Plant sample for Glycine tomentella

characteristic: title


status: PUBLIC

text: University of Illinois

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

tag: attribute

characteristic: collection date

characteristic: culture collection

text: rice straw

characteristic: isolation source

text: Actinoalloteichus caeruleus

characteristic: organism

text: Baldacci (IPV, Milano, Italy)

text: NRRL B-2194

characteristic: strain

text: Microbe sample from Actinoalloteichus caeruleus

text: type strain of Streptomyces caeruleus

characteristic: type material


text: University of Illinois

text: live

text: Microbe, viral or environmental

text: Italy: caverns of Caudano, Piedmont

characteristic: geo loc name

text: soil

text: Kitasatospora aureofaciens

text: Baldacci (IPV)

text: NRRL B-3447

text: Microbe sample from Kitasatospora aureofaciens

text: type strain of Streptomyces avellaneus


characteristic: External Id

text: University of Illinois

text: live

text: Microbe, viral or environmental

text: Actinoalloteichus caeruleus

text: Shirling, ISP from Baldacci, IPV

text: NRRL ISP-5103

text: type strain of Streptomyces caeruleus


CIT 045

text: Cork Institute Of Technology

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: Monika Koziel

characteristic: collected by

text: Ireland: Cork

text: Macaca silenus

characteristic: host

text: Faeces

text: Monika Koziel

characteristic: identified by

text: feces

text: Campylobacter corcagiensis

text: CIT 045

text: Microbe sample from Campylobacter corcagiensis

text: type strain of Campylobacter corcagiensis


text: veterinary clinical/research| wild animal

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

characteristic: biomaterial provider

text: PA Dept of Health

text: USA:PA

text: python stool

text: python:NCBITAXON_37579| feces:UBERON_0001988

characteristic: ontological term

text: Salmonella enterica

text: Lome

characteristic: serovar

text: animal

characteristic: source type

text: Pathogen: environmental/food/other sample from Salmonella enterica

characteristic: title


text: herbs

characteristic: IFSAC Category

text: FDA/CFSAN

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

text: USA:NY

text: cilantro

characteristic: isolation source

text: coriander plant:FOODON_03411381

text: Salmonella enterica

characteristic: organism

text: Newport

text: food

characteristic: strain


CSIM01 genome sequence

characteristic: External Id

text: Universidad de Salamanca

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: L.M. Coates

characteristic: collected by

characteristic: culture collection

text: Plant pathogenic fungus isolated from papaya in the Australia. A member of the C. acutatum species complex.

characteristic: description

text: Australia

characteristic: geo loc name

text: Carica papaya

characteristic: host

text: fruit

text: Papaya infected fruit

text: Colletotrichum simmondsii

text: Colletotrichum simmondsii Genome sequencing

text: culture from holotype of Colletotrichum simmondsii

characteristic: type material


text: Novozymes

characteristic: INSDC last update

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.plant-associated

text: rhizosphere

characteristic: biome

text: Keywords: GSC:MIxS;MIGS:6.0

text: wheat plant

characteristic: feature

text: Brazil

text: wheat

characteristic: investigation type

text: USPatent 6,896,883

text: plant

characteristic: material

text: Bacillus velezensis TrigoCor1448

text: USPatent 6,896,883

text: Cultured Bacterial/Archaeal sample for Bacillus amyloliquefaciens subsp. plantarum

characteristic: title


text: environmental-water

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: University of Florida

characteristic: collection date

text: USA:FL

text: surface water

characteristic: isolation source

text: surface water:ENVO_00002042

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: Georgia

characteristic: serovar

text: environmental

characteristic: source type


characteristic: External Id

text: environmental-water

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: University of Florida

characteristic: collected by

text: USA:FL

characteristic: geo loc name

text: surface water

text: surface water:ENVO_00002042

text: Salmonella enterica

text: III 16:z10:e,n,x,z15

text: environmental

characteristic: strain


text: environmental-water

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: University of Florida

text: USA:FL

text: surface water

text: surface water:ENVO_00002042

text: Salmonella enterica

text: III 44:z4,z32:-

text: environmental

characteristic: title


text: environmental-water

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: University of Florida

characteristic: collection date

text: USA:FL

text: surface water

text: surface water:ENVO_00002042

text: Salmonella enterica

text: III 60:r:z

text: environmental


text: environmental-water

text: FDA/CFSAN

text: live

text: Pathogen.env

text: University of Florida

text: USA:FL

text: surface water

characteristic: isolation source

text: surface water:ENVO_00002042

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: IV Rough O:z4,z23:-

characteristic: serovar

text: environmental


characteristic: External Id

text: environmental-water

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: University of Florida

text: USA:FL

text: surface water

text: surface water:ENVO_00002042

text: Salmonella enterica

text: IV Rough O:zr,z24:-

text: environmental

characteristic: source type


text: environmental-water

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: University of Florida

characteristic: collected by

text: USA:FL

characteristic: geo loc name

text: surface water

text: surface water:ENVO_00002042

text: Salmonella enterica

text: IV 40:z4,z24:-

text: environmental

characteristic: strain


text: environmental-water

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: University of Florida

text: USA:FL

text: surface water

text: surface water:ENVO_00002042

text: Salmonella enterica

text: IV 50:z4,z23:-

text: environmental

characteristic: title


text: environmental-water

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: University of Florida

characteristic: collection date

text: USA:FL

text: surface water

text: surface water:ENVO_00002042

text: Salmonella enterica

text: Paratyphi B var L-tartrate+

text: environmental


text: environmental-water

text: FDA/CFSAN

text: live

text: Pathogen.env

text: University of Florida

text: USA:FL

text: surface water

characteristic: isolation source

text: surface water:ENVO_00002042

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: Rough Oy:1,5

characteristic: serovar

text: environmental


characteristic: External Id

text: environmental-water

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: University of Florida

text: USA:FL

text: surface water

text: surface water:ENVO_00002042

text: Salmonella enterica

text: Saintpaul

text: environmental

characteristic: source type


text: environmental-water

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: University of Florida

characteristic: collected by

text: USA:FL

characteristic: geo loc name

text: surface water

text: surface water:ENVO_00002042

text: Salmonella enterica

text: Florida

text: environmental

characteristic: strain


text: dairy

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: VA

text: USA:VA

text: fresh cheese curd

text: cheese curd:FOODON_03310352| food fresh:FOODON_00002457

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: food

text: Pathogen: environmental/food/other sample from Listeria monocytogenes

characteristic: title


text: Bonasio, Cell and Developmental Biology, University of Pennsylvania

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Homo sapiens

characteristic: transgene

text: IPL

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: input


text: Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: age

text: Reaumuria songarica

text: leaf

text: C


text: live

text: Generic

text: Reaumuria songarica

text: leaf

text: P

text: 15% PEG for 12h


Ls

text: University of Toronto

text: live

text: Plant

text: Julien Engel

characteristic: collected by

characteristic: collection date

text: French Guiana

characteristic: geo loc name

text: Leptobalanus sprucei

text: leaf

characteristic: tissue

text: Plant sample for Licania sprucei


text: University of Washington

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Airway epithelial cells

characteristic: cell type

text: Homo sapiens

text: Cells obtained from trachea of adult lung transplant donor

characteristic: source

text: Airway epithelial cells cultured in air-liquid interface (ALI)

text: ALI AEC stimulated with flagellin replicate 1

text: flagellin


text: University of Washington

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Airway epithelial cells

text: Homo sapiens

text: Airway epithelial cells cultured as monolayer

text: Monolayer AEC stimulated with flagellin replicate 2

characteristic: title

text: flagellin


characteristic: External Id

text: University of Washington

characteristic: INSDC center name

text: live

text: Generic

text: Airway epithelial cells

text: Homo sapiens

text: Monolayer AEC unstimulated replicate 1

text: control

characteristic: treatment


text: University of Washington

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Airway epithelial cells

text: Homo sapiens

characteristic: organism

text: ALI AEC unstimulated replicate 1

text: control


text: University of Washington

text: live

text: Generic

text: Airway epithelial cells

text: Homo sapiens

text: Monolayer AEC stimulated with flagellin replicate 1

text: flagellin


text: University of Washington

text: live

text: Generic

text: Airway epithelial cells

text: Homo sapiens

text: Monolayer AEC unstimulated replicate 2

text: control


text: University of Washington

text: live

text: Generic

text: Airway epithelial cells

text: Homo sapiens

text: ALI AEC unstimulated replicate 2

text: control


text: University of Washington

text: live

text: Generic

text: Airway epithelial cells

text: Homo sapiens

text: ALI AEC stimulated with flagellin replicate 2

text: flagellin


text: University of Arizona

text: live

text: Microbe, viral or environmental

text: Johannes Sikorski

characteristic: biomaterial provider

text: Johannes Sikorski

characteristic: collected by

characteristic: collection date

text: Genome sequence of a Pseudomonas stutzeri strain highly competent for natural transformation

characteristic: description

text: Israel

text: soil

characteristic: isolation source

text: Stutzerimonas stutzeri

text: Rifampicin resistant isolate from Baltrus lab (3 passages since received)

characteristic: strain

text: Pseudomonas stutzeri 28a24 (DBL332)


Bifidobacterium stercoris DSM 24849

text: University of Parma

text: live

characteristic: INSDC status

text: pathogen.env

text: Pathogen

characteristic: culture-collection

text: Homo sapiens

characteristic: host

text: Adult feces

text: Bifidobacterium adolescentis JCM 15918

text: JCM 15918

text: Pathogen: environmental/food/other sample from Bifidobacterium adolescentis JCM 15918

text: type strain of Bifidobacterium stercoris

characteristic: type material


Pseudomonas balearica DSM6083

text: University of the Balearic Islands

text: live

text: MIGS.ba

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.wastewater

characteristic: NCBI submission package

text: Pseudomonas balearica type strain DSM6083 is a denitrifying sewage water isolate. Here we report the complete genome sequence of DSM6083.

text: Wastewater

characteristic: feature

text: Spain: Mallorca

characteristic: geo loc name

characteristic: investigation type

text: TSA, 30C

text: Wastewater

characteristic: material

text: Stutzerimonas balearica DSM 6083

text: DSM6083 (=SP1402)

characteristic: title


Mycoplasma hyosynoviae strain NPL1

characteristic: External Id

text: Newport Laboratories, A Sanofi Company

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: USA

text: Pig

text: pig

text: Metamycoplasma hyosynoviae

characteristic: organism

text: Microbe sample from Metamycoplasma hyosynoviae


Mycoplasma hyosynoviae strain NPL2

text: Newport Laboratories, A Sanofi Company

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: USA

text: Pig

text: pig

characteristic: isolation source

text: Metamycoplasma hyosynoviae

characteristic: strain


Mycoplasma hyosynoviae strain NPL3

text: Newport Laboratories, A Sanofi Company

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: USA

text: Pig

characteristic: host

text: pig

text: Metamycoplasma hyosynoviae


Mycoplasma hyosynoviae strain NPL4

text: Newport Laboratories, A Sanofi Company

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: USA

text: Pig

text: pig

text: Metamycoplasma hyosynoviae


Mycoplasma hyosynoviae strain NPL5

text: Newport Laboratories, A Sanofi Company

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: USA

text: Pig

text: pig

text: Metamycoplasma hyosynoviae


Mycoplasma hyosynoviae strain NPL6

text: Newport Laboratories, A Sanofi Company

text: live

text: Microbe, viral or environmental

text: USA

text: Pig

text: pig

text: Metamycoplasma hyosynoviae


Mycoplasma hyosynoviae strain NPL7

text: Newport Laboratories, A Sanofi Company

text: live

text: Microbe, viral or environmental

text: USA

text: Pig

text: pig

text: Metamycoplasma hyosynoviae


text: Systems biology/Bioinformatics, Hans-Knöll-Institut

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: akuB knock-out mutant

characteristic: mutant

text: Aspergillus fumigatus

text: fungal cells

text: strain CEA17

characteristic: time point

text: CAS

characteristic: treatment


characteristic: External Id

text: live

text: Generic

text: akuB knock-out mutant

text: Aspergillus fumigatus

text: fungal cells

text: strain CEA17

characteristic: title

text: siamycin


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: akuB knock-out mutant

text: Aspergillus fumigatus

text: fungal cells

text: strain CEA17

text: CAS + siamycin


characteristic: INSDC last update

text: live

text: Generic

text: akuB knock-out mutant

text: Aspergillus fumigatus

characteristic: organism

text: fungal cells

text: strain CEA17


WT

text: TGEN

text: live

text: Pathogen.cl

text: JP Latge

characteristic: collected by

characteristic: collection date

characteristic: culture collection

text: Strain CEA10 is a clinical isolate, obtained at a Paris hospital in 1989, and is the strain used in the laboratory of Dr Jean Paul Latge at the Pasteur Institute, Paris France

characteristic: description

text: wild type

characteristic: genotype

text: France: Paris

characteristic: geo loc name

text: Homo sapiens

text: Aspergillosis

characteristic: host disease

text: Human patient

characteristic: isolation source

text: 48.840932 N 2.310821 E

characteristic: lat lon

text: Aspergillus fumigatus

text: Clinical or host-associated pathogen sample for Aspergillus fumigatus


srbA

text: TGEN

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: S. Willger

text: Gene deletion strain of Aspergillus fumigatus, background strain CEA17

text: non pathogenic gene deletion of SrbA

text: USA: Bozeman, Montana

text: Homo sapiens

characteristic: host

text: Aspergillosis

text: Human patient

text: 45.669127 N 111.049331 W

text: Aspergillus fumigatus

text: CEA17 background

characteristic: strain

text: delta-srbA Aspergillus fumigatus


srbB

characteristic: External Id

text: TGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: B. Hendrickson

text: Gene deletion strain of SrbB locus in CEA17 background strain A. fumigatus

text: low pathogenicity, deletion of SrbB

text: USA: Bozeman, Montana

text: Homo sapiens

text: Aspergillosis

text: Human patient

text: 45.669127 N 111.049331 W

text: Aspergillus fumigatus

characteristic: organism

text: CEA17 background

text: delta-srbB Aspergillus fumigatus

characteristic: title


text: Yale University

text: live

text: MIGS.ba

text: Bombus bimaculatus gut

characteristic: biome

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: bee gut

characteristic: feature

text: USA: West Haven, CT

characteristic: geo loc name

text: Bombus bimaculatus

characteristic: investigation type

text: 41.26 N 72.99 W

text: gut tissue

characteristic: material

text: Snodgrassella communis

text: MIGS Cultured Bacterial/Archaeal sample from Snodgrassella communis


text: Yale University

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Bombus vagans gut

text: Keywords: GSC:MIxS;MIGS:6.0

text: bee gut

text: USA: West Haven, CT

text: Bombus vagans

text: 41.26 N 72.99 W

characteristic: lat lon

text: gut tissue

text: Snodgrassella communis


characteristic: External Id

text: herbs| other (flavoring or seasoning)

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: fda lab id

text: Mexico

text: dried oregano

characteristic: isolation source

text: food (dried):FOODON_03307539| oregano (ground):FOODON_03301482

characteristic: ontological term

text: Salmonella enterica

characteristic: serovar

text: food

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: seeds

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 643197 3-10

text: Mexico

characteristic: geo loc name

text: sesame seed

text: sesame seed:FOODON_03310306

text: Salmonella enterica

characteristic: organism

characteristic: pfge primary enzyme pattern

text: food

characteristic: title


characteristic: External Id

text: seeds

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: Guatemala

text: hulled sesame seed

text: sesame seed (hulled):FOODON_03304876

text: Salmonella enterica

text: Rough:g,f,s,t:-

text: food


text: seeds

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA

characteristic: collected by

text: 645185 3-1

characteristic: fda lab id

text: India

text: hulled sesame seed

characteristic: isolation source

text: sesame seed (hulled):FOODON_03304876

characteristic: ontological term

text: Salmonella enterica

text: D2 positive for Statens HME antisera

characteristic: serovar

text: food


text: herbs

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 790872 1-25

text: Mexico

text: fresh basil

text: food fresh:FOODON_00002457| basil food product:FOODON_00003044

text: Salmonella enterica

text: food

characteristic: source type

characteristic: strain


characteristic: External Id

text: herbs

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: 790878 2-7

text: Mexico

characteristic: geo loc name

text: fresh basil

text: Salmonella enterica

characteristic: organism

characteristic: pfge primary enzyme pattern

text: food

characteristic: title


text: herbs| other (flavoring or seasoning)

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: FDA

characteristic: collected by

text: 790332 C1-1

text: India

text: coriander powder

text: coriander food product:FOODON_00001763| food powdered:FOODON_00002976

text: Salmonella enterica

text: food


text: seeded vegetables (solanaceous)

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA

text: 817251 C1-5

characteristic: fda lab id

text: Mexico

text: chili pepper

characteristic: isolation source

text: chili pepper:FOODON_03315873

characteristic: ontological term

text: Salmonella enterica

text: food


characteristic: External Id

text: seeded vegetables (solanaceous)

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 819955 C2-1

text: Mexico

text: pasilla pepper

text: pasilla pepper plant:FOODON_03412560

text: Salmonella enterica

text: food

characteristic: source type

characteristic: strain


text: herbs

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

text: 819678 C1-3

text: Mexico

characteristic: geo loc name

text: fresh raw basil

text: food (fresh):FOODON_00002457| food (raw):FOODON_03311126| basil food product:FOODON_00003044

text: Salmonella enterica

characteristic: organism

text: food

characteristic: title


text: herbs

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: 819678 C1-9

text: Mexico

text: fresh raw basil

text: Salmonella enterica

text: food


text: multi-ingredient| other (confectionery)

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA

characteristic: collected by

text: 826696 C2-1

text: Lebanon

text: dessert plain halawa

text: dessert food:FOODON_03303220| plain:ENVO_00000086

text: Salmonella enterica

characteristic: pfge primary enzyme pattern

text: food


characteristic: External Id

text: seeded vegetables (solanaceous)

text: FDA/CFSAN

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

text: 838877 C2-1

characteristic: fda lab id

text: Mexico

text: fresh anaheim pepper

characteristic: isolation source

text: anaheim pepper plant:FOODON_03412549| food (fresh):FOODON_00002457

characteristic: ontological term

text: Salmonella enterica

text: food


text: seeded vegetables (solanaceous)

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 839783 1-1

text: Mexico

characteristic: geo loc name

text: fresh roma tomato

text: plum tomato (whole, raw):FOODON_00003228| food (fresh):FOODON_00002457

text: Salmonella enterica

text: food

characteristic: source type

characteristic: strain


text: environmental

text: FDA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

text: USA:DE

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: FDA Center for Food Safety and Applied Nutrition

characteristic: sequenced by

text: environmental

text: Pathogen: environmental/food/other sample from Listeria monocytogenes

characteristic: title


characteristic: External Id

text: Systems biology/Bioinformatics, Hans-Knöll-Institut

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: akuB knock-out mutant

characteristic: mutant

text: Aspergillus fumigatus

text: fungal cells

characteristic: time point


characteristic: INSDC last update

text: live

text: Generic

text: wild type

text: Aspergillus fumigatus

text: fungal cells


text: live

text: Generic

text: akuB knock-out mutant

text: Aspergillus fumigatus

text: repeated due to lack of reads

characteristic: repeated run

text: fungal cells


text: live

text: Generic

text: akuB, mpkA knock-out mutant

text: Aspergillus fumigatus

text: fungal cells

characteristic: strain


characteristic: INSDC secondary accession

text: live

text: Generic

text: akuB, mpkA knock-out mutant

text: Aspergillus fumigatus

text: repeated due to lack of reads

text: fungal cells


text: live

characteristic: INSDC status

text: Generic

text: akuB, sakA knock-out mutant

text: Aspergillus fumigatus

text: fungal cells


text: live

text: Generic

characteristic: NCBI submission model

text: akuB, sakA knock-out mutant

text: Aspergillus fumigatus

text: repeated due to lack of reads

text: fungal cells


text: dairy

characteristic: IFSAC+ Category

text: FDA

text: live

text: Pathogen.env

text: VA

characteristic: collected by

characteristic: collection date

text: USA:VA

characteristic: geo loc name

text: fresh cheese curd

characteristic: isolation source

text: cheese curd:FOODON_03310352| food fresh:FOODON_00002457

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

characteristic: pfge primary enzyme pattern

text: food

characteristic: source type


characteristic: External Id

text: multi-ingredient| pork

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: USA:TX

text: pork beef sausage

text: pork sausage:FOODON_00002729| beef sausage:FOODON_00002958

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

characteristic: title


text: FDA

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: USA:TX

text: drain cover in packaging room

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: strain


text: dairy

characteristic: IFSAC+ Category

text: FDA

text: live

text: Pathogen.env

text: Washington DC

characteristic: collected by

characteristic: collection date

text: USA:DC

characteristic: geo loc name

text: aged hard cheese

characteristic: isolation source

text: hard cheese:FOODON_03301738| curing or aging process:FOODON_03460253

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

text: food


characteristic: External Id

text: dairy

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: Washington DC

text: USA:DC

text: fresh round cheese

text: food fresh:FOODON_00002457| cheese food product:FOODON_00001013

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food

characteristic: source type


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: cell line

text: breast cancer

characteristic: cell type

text: Antibody Mix: HC20 (Santa Cruz) + ab10 (TE111-SD11, NeoMarker)

characteristic: chip antibody

text: female

characteristic: gender

text: 10-8M Estradiol (Sigma)

characteristic: hormone treatment

characteristic: integrated vector

text: Homo sapiens

text: breast cancer cell line

text: MDA::ER::pCDNA ER ChIP

characteristic: title

text: no

characteristic: transfected sirna


text: SP@RTE, CNRS UMR 6290

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: breast cancer

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

text: breast cancer cell line

text: MDA::ER input

text: no


characteristic: External Id

text: SP@RTE, CNRS UMR 6290

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: breast cancer

text: Antibody Mix: clone 3C10 (Millipore) + ab23630 (Abcam)

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

text: breast cancer cell line

text: MDA::ER::pCDNA FOXA2 ChIP

text: no


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

characteristic: NCBI submission package

text: breast cancer

text: ab4729 (Abcam)

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

characteristic: organism

text: breast cancer cell line

text: MDA::ER::pCDNA H3K27ac ChIP

text: no


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

characteristic: SRA accession

characteristic: cell line

text: breast cancer

text: female

text: 10-8M Estradiol (Sigma)

text: pCDNA3.1-Hygro-ER/pCDNA6-TR/pCDNA4-FOXA1

text: Homo sapiens

text: breast cancer cell line

text: MDA::ER::FOXA1 FOXA2 ChIP

text: no


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

text: breast cancer

characteristic: cell type

text: 07-030 (Millipore)

characteristic: chip antibody

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

text: breast cancer cell line

text: MDA::ER::FOXA1 H3K4me2 ChIP

text: no


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

text: breast cancer

text: female

characteristic: gender

text: 10-8M Estradiol (Sigma)

characteristic: hormone treatment

text: Homo sapiens

text: breast cancer cell line

text: MDA::ER::FOXA1 ER ChIP

text: no


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

text: breast cancer

text: 07-030 (Millipore)

text: female

text: 10-8M Estradiol (Sigma)

characteristic: integrated vector

text: Homo sapiens

text: breast cancer cell line

text: MDA::ER::pCDNA H3K4me2 ChIP

characteristic: title

text: no


text: SP@RTE, CNRS UMR 6290

characteristic: INSDC last update

text: live

text: Generic

text: breast cancer

text: ab 5089 (Abcam)

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

text: breast cancer cell line

text: MDA::ER::FOXA1 FOXA1 ChIP

text: no

characteristic: transfected sirna


text: SP@RTE, CNRS UMR 6290

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: breast cancer

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

text: breast cancer cell line

text: MCF-7 input

text: no


characteristic: External Id

text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

characteristic: NCBI submission model

text: breast cancer

text: ab4729 (Abcam)

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

text: breast cancer cell line

text: MDA::ER::FOXA1 H3K27ac ChIP

text: no


text: SP@RTE, CNRS UMR 6290

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: breast cancer

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

text: breast cancer cell line

text: MCF-7 ER ChIP

text: no


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

characteristic: NCBI submission package

text: breast cancer

text: ab4729 (Abcam)

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

characteristic: organism

text: breast cancer cell line

text: MCF-7 H3K27ac ChIP

text: no


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

characteristic: SRA accession

characteristic: cell line

text: breast cancer

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

text: breast cancer cell line

text: MDA::ER::pCDNA_siLuc ER ChIP

text: yes: control siRNA directed against Luciferase


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

text: breast cancer

characteristic: cell type

characteristic: chip antibody

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

text: breast cancer cell line

text: MDA::ER::pCDNA_siFOXA2 ER ChIP

text: yes: siRNA directed against FOXA2


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

text: breast cancer

text: ab 5089 (Abcam)

text: female

characteristic: gender

text: 10-8M Estradiol (Sigma)

characteristic: hormone treatment

text: Homo sapiens

text: breast cancer cell line

text: MCF-7 FOXA1 ChIP

text: no


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

text: breast cancer

text: 07-030 (Millipore)

text: female

text: Homo sapiens

text: breast cancer cell line

text: MDA-MB231 H3K4me2 ChIP

characteristic: title

text: no


text: SP@RTE, CNRS UMR 6290

characteristic: INSDC last update

text: live

text: Generic

text: breast cancer

text: ab4729 (Abcam)

text: female

text: Homo sapiens

text: breast cancer cell line

text: MDA-MB231 H3K27ac ChIP

text: no


text: SP@RTE, CNRS UMR 6290

text: live

text: Generic

text: breast cancer

text: 07-030 (Millipore)

text: female

text: 10-8M Estradiol (Sigma)

text: Homo sapiens

text: breast cancer cell line

text: MCF-7 H3K4me2 ChIP

text: no

characteristic: transfected sirna


text: Pacific Biosciences

characteristic: INSDC secondary accession

text: live

text: Generic

text: Gemmatirosa kalamazoonensis

text: Bacterial gDNA

characteristic: strain

text: type strain of Gemmatirosa kalamazoonensis

characteristic: type-material


characteristic: External Id

text: clinical/research, human

characteristic: IFSAC+ Category

text: FDA

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: CDC

characteristic: collected by

characteristic: collection date

text: USA

characteristic: geo loc name

text: Homo sapiens

characteristic: host

characteristic: ontological term

text: Escherichia coli

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: human

characteristic: source type

text: Clinical or host-associated pathogen sample for Escherichia coli


text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: MDP

text: Homo sapiens

text: bagged lettuce

characteristic: isolation source

text: Escherichia coli

characteristic: organism

text: GenomeTrakr

characteristic: title


characteristic: External Id

text: beef

characteristic: IFSAC Category

text: FDA

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: USDA

text: ground beef

text: ground beef food product:FOODON_00001282

text: Escherichia coli

text: GenomeTrakr

text: food

characteristic: strain

text: Environmental, food or other pathogen sample for Escherichia coli


Reaumuria soongorica

text: Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences

characteristic: INSDC secondary accession

text: live

text: Plant

characteristic: NCBI submission model

characteristic: SRA accession

text: 3-year old

characteristic: age

text: the northern foothills of Lanzhou, Gansu, China.

characteristic: biomaterial provider

text: Yubing Liu

characteristic: collected by

characteristic: collection date

text: stress-treated

characteristic: cultivar

text: adult

characteristic: dev stage

text: Reaumuria songarica

text: leaf

characteristic: tissue

text: Plant sample for Reaumuria soongarica

text: Five groups were established: control, drought treatment, UV-B treatment, combination of drought and UV-B treatment, and combination of drought, UV-B and salt treatment.

characteristic: treatment


text: fish

characteristic: IFSAC+ Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

characteristic: fda lab id

text: Canada

characteristic: geo loc name

text: smoked salmon

characteristic: isolation source

text: salmon (smoked):FOODON_03301805

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

characteristic: pfge primary enzyme pattern

text: GenomeTrakr

characteristic: project name

text: FDA Center for Food Safety and Applied Nutrition

characteristic: sequenced by

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


characteristic: External Id

text: FDA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: collection date

text: 808466 A Chrome

text: USA:CO

text: green chile ingredient

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: strain

characteristic: title


text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

text: 808466 A Palcam

characteristic: fda lab id

text: USA:CO

characteristic: geo loc name

text: green chile ingredient

text: Listeria monocytogenes

text: GenomeTrakr


text: FDA

text: live

text: Pathogen.env

text: FDA

text: 808467 A Chrome

text: USA:CO

text: green chile ingredient

characteristic: isolation source

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by


characteristic: External Id

text: FDA

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA

text: 808468 A Chrome

text: USA:CO

text: green chile ingredient

text: Listeria monocytogenes

text: GenomeTrakr


text: FDA

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: SRA accession

text: FDA

characteristic: collected by

text: 808468 A Palcam

text: USA:CO

text: green chile ingredient

text: Listeria monocytogenes

text: GenomeTrakr


FDA780367 18-6

text: environmental

characteristic: IFSAC+ Category

text: FDA

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 780367 18-6

text: USA:WA

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

characteristic: ontological term

text: Listeria monocytogenes

text: environmental

characteristic: source type

text: FDA780367 18-6

characteristic: strain

characteristic: title


FDA780367 22-16

text: environmental

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

text: 780367 22-16

characteristic: fda lab id

text: USA:WA

characteristic: geo loc name

text: environmental swab

text: Listeria monocytogenes

text: environmental

text: FDA780367 22-16


FDA780367 32-26

characteristic: External Id

text: environmental

text: FDA

text: live

text: Pathogen.env

text: FDA

text: 780367 32-26

text: USA:WA

text: environmental swab

characteristic: isolation source

text: Listeria monocytogenes

characteristic: organism

text: environmental

text: FDA780367 32-26


text: Systems Biology / Bioinformatics, Hans-Knöll-Institute (HKI)

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Aspergillus fumigatus

text: hyphae

text: CEA 10

text: timepoint 0 min, 100 % oxygen saturation

characteristic: treatment protocol


text: live

text: Generic

text: Aspergillus fumigatus

text: hyphae

text: CEA 10

text: timepoint 30 min, 5 % oxygen saturation


text: live

text: Generic

text: Aspergillus fumigatus

text: hyphae

text: CEA 10

text: timepoint 15 min, 5 % oxygen saturation


text: live

text: Generic

text: Aspergillus fumigatus

text: hyphae

text: CEA 10

text: timepoint 75 min, 100 % oxygen saturation


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: Viet Nam: Near the coastal town of Vung Tau

characteristic: investigation type

text: Oleidesulfovibrio vietnamensis DSM 10520

text: Desulfovibrio vietnamensis DSM 10520

characteristic: project name

text: DSM 10520

text: Desulfovibrio vietnamensis DSM 10520

text: type strain of Desulfovibrio vietnamensis

characteristic: type material


text: Stanford University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Viral

text: Emesvirus zinderi

text: MS2 hairpin mutagenesis library

characteristic: title


text: Institute for Genome Sciences University of MD School of Medicine

characteristic: INSDC last update

text: live

text: USA

text: Generic

characteristic: NCBI submission package

text: USA

characteristic: country

text: Acinetobacter

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: perirectal

characteristic: isolation-source

text: skin or soft tissue

text: Homo sapiens

characteristic: nat-host

text: Originally submitted as Acinetobacter baumannii 1451147 but changed in October 2018 because of ANI results to Acinetobacter pittii

characteristic: note

text: Acinetobacter pittii

characteristic: strain

text: Acinetobacter baumannii 1451147

type: AMR curated data - CABBAGE

value: imipenem

value: CLSI

value: susceptible

value: Acinetobacter baumannii


characteristic: External Id

text: multi-ingredient, pork

characteristic: IFSAC Category

text: FDA

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Texas Department of State Health Services

characteristic: collected by

characteristic: collection date

text: USA:TX

characteristic: geo loc name

text: pork beef sausage

characteristic: isolation source

text: pork sausage:FOODON_00002729, beef sausage:FOODON_00002958

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: sequenced by

text: food

characteristic: source type


FDA780410 10-1

text: environmental

characteristic: IFSAC+ Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: FDA

text: 780410 10-1

characteristic: fda lab id

text: USA:CA

text: environmental swab

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: environmental

text: FDA780410 10-1

characteristic: title


characteristic: External Id

text: Max-Planck Institute for Marine Microbiology

text: live

characteristic: INSDC status

text: MIMARKS.survey

characteristic: NCBI submission model

text: marine abyssal zone biome

characteristic: biome

characteristic: collection date

characteristic: depth

text: station 81,sediment depth: 0-1 cm, total nucleic acid extraction - DNase treatment - reverse transcription - generation of 16S rRNA amplicons using primer pair GM3/907R

characteristic: description

characteristic: env package

text: ocean floor

characteristic: feature

text: Southern Ocean

text: miens-survey

characteristic: investigation type

text: 52.011 S 10.011 E

characteristic: lat lon

text: sediment depth: 0-1cm

characteristic: material

text: marine sediment metagenome

text: Total nucleic acid extraction - DNase treatment - reverse transcription - generation of 16S rRNA amplicons using primer pair GM3/907R

characteristic: samp mat process

text: Multicorer

text: MIMARKS Survey related sample from marine sediment metagenome


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: SRA accession

text: marine abyssal zone biome

text: station 81,sediment depth: 1-2 cm, total nucleic acid extraction - DNase treatment - reverse transcription - generation of 16S rRNA amplicons using primer pair GM3/907R

text: ocean floor

text: Southern Ocean

characteristic: geo loc name

text: miens-survey

text: 52.011 S 10.011 E

text: sediment depth: 1-2cm

text: marine sediment metagenome

characteristic: organism

text: Multicorer


characteristic: External Id

text: live

characteristic: INSDC status

text: MIMARKS.survey

characteristic: NCBI submission model

text: marine abyssal zone biome

characteristic: biome

characteristic: collection date

text: station 86,sediment depth: 0-1 cm, total nucleic acid extraction - DNase treatment - reverse transcription - generation of 16S rRNA amplicons using primer pair GM3/907R

text: ocean floor

text: Southern Ocean

text: miens-survey

text: 51.987 S 12.036 W

text: sediment depth: 0-1cm

text: marine sediment metagenome

text: Multicorer

characteristic: title


text: live

text: MIMARKS.survey

text: marine abyssal zone biome

characteristic: depth

text: station 86,sediment depth: 1-2 cm, total nucleic acid extraction - DNase treatment - reverse transcription - generation of 16S rRNA amplicons using primer pair GM3/907R

characteristic: description

characteristic: env package

text: ocean floor

characteristic: feature

text: Southern Ocean

text: miens-survey

characteristic: investigation type

text: 51.987 S 12.036 W

characteristic: lat lon

text: sediment depth: 1-2cm

text: marine sediment metagenome

text: Multicorer


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIMARKS.survey

text: marine abyssal zone biome

text: station 141,sediment depth: 0-1 cm, total nucleic acid extraction - DNase treatment - reverse transcription - generation of 16S rRNA amplicons using primer pair GM3/907R

text: ocean floor

text: Southern Ocean

text: miens-survey

text: 51.268 S 12.618 W

text: sediment depth: 0-1cm

characteristic: material

text: marine sediment metagenome

characteristic: samp mat process

text: Multicorer


characteristic: External Id

text: live

characteristic: INSDC status

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: SRA accession

text: marine abyssal zone biome

text: station 141,sediment depth: 1-2 cm, total nucleic acid extraction - DNase treatment - reverse transcription - generation of 16S rRNA amplicons using primer pair GM3/907R

text: ocean floor

text: Southern Ocean

characteristic: geo loc name

text: miens-survey

text: 51.268 S 12.618 W

text: sediment depth: 1-2cm

text: marine sediment metagenome

characteristic: organism

text: Multicorer


text: live

text: MIMARKS.survey

characteristic: NCBI submission model

text: marine abyssal zone biome

characteristic: biome

characteristic: collection date

characteristic: depth

text: station 175,sediment depth: 0-1 cm, total nucleic acid extraction - DNase treatment - reverse transcription - generation of 16S rRNA amplicons using primer pair GM3/907R

characteristic: description

text: ocean floor

text: Southern Ocean

text: miens-survey

text: 50.784 S 39.428 W

text: sediment depth: 0-1cm

text: marine sediment metagenome

text: Multicorer

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIMARKS.survey

text: marine abyssal zone biome

text: station 175,sediment depth: 1-2 cm, total nucleic acid extraction - DNase treatment - reverse transcription - generation of 16S rRNA amplicons using primer pair GM3/907R

characteristic: env package

text: ocean floor

characteristic: feature

text: Southern Ocean

text: miens-survey

characteristic: investigation type

text: 50.784 S 39.428 W

characteristic: lat lon

text: sediment depth: 1-2cm

text: marine sediment metagenome

text: Multicorer


characteristic: External Id

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMARKS.survey

text: The marine bathyal zone biome comprises regions of the marine benthic biome between approximately 200 m and 3000 m depth. This zone generally coincides with the continental slope.

text: station 177,sediment depth: 0-1 cm, total nucleic acid extraction - DNase treatment - reverse transcription - generation of 16S rRNA amplicons using primer pair GM3/907R

text: ocean floor

text: Southern Ocean

text: miens-survey

text: 53.815 S 52.358 W

text: sediment depth: 0-1cm

characteristic: material

text: marine sediment metagenome

characteristic: samp mat process

text: Multicorer


text: live

text: MIMARKS.survey

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: biome

text: station 177,sediment depth: 1-2 cm, total nucleic acid extraction - DNase treatment - reverse transcription - generation of 16S rRNA amplicons using primer pair GM3/907R

text: ocean floor

text: Southern Ocean

characteristic: geo loc name

text: miens-survey

text: 53.815 S 52.358 W

text: sediment depth: 1-2cm

text: marine sediment metagenome

characteristic: organism

text: Multicorer


text: Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: age

text: Reaumuria songarica

text: leaf

characteristic: title

text: combined stresses by UV-B, PEG and NaCl

characteristic: treatment


characteristic: External Id

text: live

text: Generic

text: Reaumuria songarica

text: leaf

text: U

text: UV-B treated


characteristic: INSDC last update

text: live

text: Generic

text: Reaumuria songarica

text: leaf

text: UP

text: combined stresses by UV-B and PEG


text: other (flavoring or seasoning)

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: Israel

text: peppercorn powder

characteristic: isolation source

text: food (powdered):FOODON_00002976| peppercorn:FOODON_03310070

characteristic: ontological term

text: Salmonella enterica

characteristic: pfge primary enzyme pattern

text: food

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: dairy

characteristic: IFSAC Category

text: FDA/CFSAN

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: Germany

characteristic: geo loc name

text: cambozola blue cheese

text: cambozola cheese:FOODON_00002421

text: Salmonella enterica

characteristic: organism

text: food


characteristic: External Id

text: seeded vegetables (solanaceous)

text: FDA/CFSAN

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

text: USA:GA

text: red round tomato

text: tomato (whole, raw):FOODON_03309927

text: Salmonella enterica

text: food

characteristic: title


Fusarium temperatum Netza9

text: Forestry and Agricultural Biotechnology Institute (FABI)

characteristic: INSDC secondary accession

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: SRA accession

text: Teosinte field

characteristic: biome

characteristic: collection date

text: Fusarium temperatum (formerly known as Fusarium subglutinans group 1) is a mycotoxin producing pathogen of maize causing stalk rot and seedling malformation.

characteristic: description

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: env package

text: 45.5 Mb

characteristic: estimated size

text: Teosinte field

characteristic: feature

text: Mexico: Netzahualcoyotyl

text: Zea mays

characteristic: host

text: eukaryote

characteristic: investigation type

text: DNA isolated from mycelium grown in culture

text: 19.52 N 98.88 W

characteristic: lat lon

text: Teosinte seeds

characteristic: material

text: Fusarium temperatum

text: haploid

characteristic: ploidy

text: Sexual and asexual spores

characteristic: propagation

text: Eukaryotic sample for Fusarium temperatum


FDA530433 1-1

characteristic: External Id

text: fish

characteristic: IFSAC+ Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

characteristic: collected by

text: 530433 1-1

characteristic: fda lab id

text: USA:IL

characteristic: geo loc name

text: smoked salmon

characteristic: isolation source

text: salmon (smoked):FOODON_03301805

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Arkansas Laboratory

characteristic: sequenced by

text: food

characteristic: source type

text: FDA530433 1-1

characteristic: strain

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


characteristic: External Id

text: multi-ingredient, fish, oils

characteristic: IFSAC Category

text: FDA

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: USA:NY

text: herring in oil

text: herring:FOODON_03411414, oil:FOODON_03310387

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: food

characteristic: title


text: multi-ingredient, fish

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: USA: NY

text: kippered salmon salad

text: kippered salmon:FOODON_03308925, salad:FOODON_03316042

text: Listeria monocytogenes

text: food


text: environmental

characteristic: IFSAC+ Category

text: FDA

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: fda lab id

text: USA:NY

characteristic: geo loc name

text: environmental swab

characteristic: isolation source

text: environmental (swab or sampling):GENEPIO_0001732

characteristic: ontological term

text: Listeria monocytogenes

text: environmental


characteristic: External Id

text: environmental

text: FDA

text: live

text: Pathogen.env

text: FDA

text: USA: NY

text: environmental swab

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

text: environmental

characteristic: source type

characteristic: strain


text: fish

characteristic: IFSAC Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: USA:NY

text: smoked salmon

text: salmon (smoked):FOODON_03301805

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: GenomeTrakr

text: food

characteristic: title


FDA694251 106

text: environmental

characteristic: IFSAC+ Category

text: FDA

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

characteristic: collected by

text: 694251 106

text: USA:NY

text: environmental swab

text: Listeria monocytogenes

text: GenomeTrakr

text: environmental

text: FDA694251 106


characteristic: External Id

text: FDA

text: live

text: Pathogen.env

text: FDA

characteristic: fda lab id

text: USA:NY

characteristic: geo loc name

text: environmental swab

characteristic: isolation source

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr


text: fish

characteristic: IFSAC Category

text: FDA

text: live

text: Pathogen.env

text: FDA

text: USA: NY

text: salmon trimming

text: salmon food product:FOODON_00002220

characteristic: ontological term

text: Listeria monocytogenes

text: food

characteristic: source type

characteristic: strain


text: multi-ingredient, fish, oils, seeded vegetables (other)

text: FDA

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: USA:NY

text: herring in corn oil

text: corn oil:FOODON_03301474, herring:FOODON_03411414

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food


text: fish

text: FDA

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: USA:NY

text: smoked salmon

text: salmon (smoked):FOODON_03301805

text: Listeria monocytogenes

text: food

characteristic: title


characteristic: External Id

text: fish

text: FDA

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: fda lab id

text: USA: NY

characteristic: geo loc name

text: vacuum packed pickled herring fish

characteristic: isolation source

text: fish (pickled):FOODON_03315445, herring (pickled):FOODON_03301405, vacuum-packed:FOODON_03480027

text: Listeria monocytogenes

text: GenomeTrakr

text: food


text: engineered seafood

characteristic: IFSAC Category

text: FDA

text: live

text: Pathogen.env

text: FDA

text: China

text: imitation crab meat

text: imitation crabmeat from artificially-flavored pollock:FOODON_03308641

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: food

characteristic: source type

characteristic: strain


FDA469169 ox 3

text: FDA

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 469169 ox 3

text: USA:NY

text: cold smoked salmon

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: GenomeTrakr

characteristic: project name

text: FDA469169 ox 3


FDA469169 pel 2

text: FDA

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: 469169 pel 2

text: USA:NY

text: cold smoked salmon

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: sequenced by

text: FDA469169 pel 2


FDA530486 2-5

characteristic: External Id

text: fish

text: FDA

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

text: 530486 2-5

characteristic: fda lab id

text: USA: NY

characteristic: geo loc name

text: smoked salmon

text: salmon (smoked):FOODON_03301805

text: Listeria monocytogenes

text: GenomeTrakr

text: food

text: FDA530486 2-5

characteristic: title


FDA530486 2-6

text: fish

characteristic: IFSAC Category

text: FDA

text: live

text: Pathogen.env

text: FDA

text: 530486 2-6

text: USA: NY

text: smoked salmon

characteristic: isolation source

text: salmon (smoked):FOODON_03301805

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food

characteristic: source type

text: FDA530486 2-6


FDA694251 111

text: environmental

characteristic: IFSAC+ Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 694251 111

text: USA:NY

text: environmental swab

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: GenomeTrakr

text: environmental

text: FDA694251 111

characteristic: strain


text: fish

text: FDA

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: Netherlands

text: smoked salmon

text: salmon (smoked):FOODON_03301805

text: Listeria monocytogenes

text: food


characteristic: External Id

text: environmental

text: FDA

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: fda lab id

text: USA:NY

characteristic: geo loc name

text: environmental swab

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: environmental


FDA694251 119

text: environmental

text: FDA

text: live

text: Pathogen.env

text: FDA

text: 694251 119

text: USA:NY

text: environmental swab

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: environmental

characteristic: source type

text: FDA694251 119

characteristic: title


FDA694251 118

text: environmental

characteristic: IFSAC+ Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 694251 118

text: USA:NY

text: environmental swab

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: GenomeTrakr

text: environmental

text: FDA694251 118


FDA694251 23

text: environmental

text: FDA

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: 694251 23

text: USA:NY

text: environmental swab

text: Listeria monocytogenes

text: GenomeTrakr

text: environmental

text: FDA694251 23

characteristic: strain


characteristic: External Id

text: fish

characteristic: IFSAC Category

text: FDA

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: fda lab id

text: USA:NY

characteristic: geo loc name

text: smoked vacuum packed salmon

text: salmon (smoked):FOODON_03301805, vacuum-packed:FOODON_03480027

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: food


text: fish

text: FDA

text: live

text: Pathogen.env

text: FDA

text: Iceland

text: frozen smoked salmon

characteristic: isolation source

text: salmon (frozen):FOODON_03312062, salmon (smoked):FOODON_03301805

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: food

characteristic: source type

characteristic: title


text: multi-ingredient

text: FDA

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: USA

text: sandwich

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: food


text: multi-ingredient, fish

text: FDA

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: USA:CA

text: tuna sandwich

text: tuna:FOODON_03411269, sandwich:FOODON_03301906

text: Listeria monocytogenes

text: food


characteristic: External Id

text: multi-ingredient, mollusks (non-bi-valve)

characteristic: IFSAC Category

text: FDA

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

text: USA:HI

text: seasoned cuttlefish

text: food (seasoned):FOODON_00002733, cuttlefish:FOODON_03411644

text: Listeria monocytogenes

text: food

characteristic: strain


FDA823157 4-1

text: FDA

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA

text: 823157 4-1

characteristic: fda lab id

text: USA:MI

characteristic: geo loc name

text: cantaloupe

characteristic: isolation source

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: FDA823157 4-1


FDA823157 9-1

text: FDA

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: 823157 9-1

text: USA:MI

text: cantaloupe

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: FDA823157 9-1

characteristic: title


text: multi-ingredient, grains

text: FDA

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: USA:CO

characteristic: isolate

text: california roll

text: roll or bun:FOODON_00002743

characteristic: ontological term

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: food

characteristic: source type


characteristic: External Id

text: environmental

characteristic: IFSAC+ Category

text: FDA

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: fda lab id

text: USA:CO

characteristic: geo loc name

text: environmental swab

text: Listeria monocytogenes

text: environmental

characteristic: strain


text: multi-ingredient, crustaceans

characteristic: IFSAC Category

text: FDA

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: USA:PA

text: crab cake

characteristic: isolation source

text: crab cake:FOODON_03305365

text: Listeria monocytogenes

text: food


text: fish

text: FDA

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

text: Lithuania

text: herring fillet fish

text: fish fillet:FOODON_00002679, herring fillet:FOODON_00002715

text: Listeria monocytogenes

characteristic: organism

text: food

characteristic: title


text: multi-ingredient, crustaceans

text: FDA

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

text: USA:PA

characteristic: isolate

text: frozen fried crab cake

text: crab cake:FOODON_03305365, frozen:PATO_0001985, food fried:FOODON_00002660

characteristic: ontological term

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: food

characteristic: source type


characteristic: External Id

text: fish

text: FDA

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: fda lab id

text: Taiwan

characteristic: geo loc name

text: frozen roasted eel

text: fish (frozen):FOODON_03301083, food roasted:FOODON_00002744, eel:FOODON_03411278

text: Listeria monocytogenes

text: food


Xylella fastidiosa Elm-ATCC35873

text: Beltsville Agricultural Research Center

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

characteristic: culture-collection

text: Xylella fastidiosa cuases bacterial leaf scorch diseases in landscrpe trees including elm.

characteristic: description

text: USA: Washington DC

text: Ulmus americana (American elm)

characteristic: host

text: American Elm

text: Xylella fastidiosa

text: ATCC 35873

characteristic: strain

text: Microbe sample for Xylella fastidiosa


text: Illinois Institute of Technology

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Intracellular parasite infecting the gut epithelium of the cladoceran Daphnia magna. Contains features of ancient microsporidia. Isolated from D. magna clone EK-1-1 sampled in Kaimes, UK.

text: 8 Mbp

characteristic: estimated size

text: United Kingdom: Kaimes

text: Daphnia magna

text: eukaryote

characteristic: investigation type

characteristic: isolate label

text: Water

characteristic: material

text: Mitosporidium daphniae

characteristic: organism

text: spores

characteristic: tissue-type

text: Eukaryotic sample for Mitosporidium daphniae

characteristic: title

text: reference material of Mitosporidium daphniae

characteristic: type-material


characteristic: External Id

text: Aquacen - National Reference Laboratory for Aquatic Animal Diseases, Brazilian Ministry of Fisheries and Aquaculture and Laboratory of Cellular and Molecular Genetics, Federal University of Minas Gerais

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Weissella ceti is a Gram-positive non-motile bacterium that is an emerging pathogen affecting rainbow trout, Onchorhynchus mykiss (Walbaum), farms. Outbreaks are characterized by acute haemorrhagic septicaemia and high mortality rates.

text: Brazil

characteristic: geo loc name

text: brain

characteristic: isolation source

text: Weissella tructae

text: Weissella ceti str. WS08

text: type strain of Weissella tructae


text: Research Institute of Physico-Chemical Medicine

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: SRA accession

characteristic: dataset

text: Russia: Moscow

characteristic: id

text: culture

text: Mycoplasmoides gallisepticum S6

characteristic: strain

text: Microbe sample from Mycoplasmoides gallisepticum S6

text: heat shock 5 min

characteristic: treatment


text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Russia: Moscow

text: culture

text: Mycoplasmoides gallisepticum S6

characteristic: organism

text: heat shock 15 min


characteristic: External Id

text: live

text: Microbe, viral or environmental

text: Russia: Moscow

text: culture

text: Mycoplasmoides gallisepticum S6

characteristic: title

text: heat shock 30 min


characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: Russia: Moscow

text: culture

text: Mycoplasmoides gallisepticum S6


text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Russia: Moscow

characteristic: geo loc name

text: culture

text: Mycoplasmoides gallisepticum S6

text: control sample


characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Russia: Moscow

text: culture

characteristic: isolation source

text: Mycoplasmoides gallisepticum S6

text: NaCl


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Russia: Moscow

text: culture

text: Mycoplasmoides gallisepticum S6

text: 5'ERS control


text: live

text: Microbe, viral or environmental

characteristic: SRA accession

characteristic: dataset

text: Russia: Moscow

text: culture

text: Mycoplasmoides gallisepticum S6

text: 5'ERS heat shock 15 min


text: live

text: Microbe, viral or environmental

text: Russia: Moscow

characteristic: id

text: culture

text: Mycoplasmoides gallisepticum S6

characteristic: strain

text: stationary growth


text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Russia: Moscow

text: culture

text: Mycoplasmoides gallisepticum S6

text: heat shock 15 min at stationary growth

characteristic: treatment


tap

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: Russia: Moscow

text: tap

text: culture

text: Mycoplasmoides gallisepticum S6

characteristic: organism

text: 5'ERS control


Polynucleobacter strain UK-Long2-W17

characteristic: External Id

text: University of Innsbruck

text: live

text: MIGS.ba

text: pond near Longyearbyen

characteristic: biome

text: Cultured bacterial sample from Polynucleobacter strain UK-Long2-W17

characteristic: description

text: pond

characteristic: feature

text: Norway: Svalbard, pond near Longyearbyen

text: Hahn et al., 2004

text: 78.21857 N 15.69481 E

characteristic: lat lon

text: pond water

characteristic: material

text: Polynucleobacter arcticus

text: Hahn et al., 2012

characteristic: title

text: type strain of Polynucleobacter arcticus

characteristic: type-material


text: University of Alberta

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.microbial

text: MIGS.ba

text: enrichment culture

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

text: coal cutting

text: Canada: Quicksilver from Bowden, Alberta

characteristic: geo loc name

text: isolated using anaerobic media

text: lab enrichment culture in anaerobic medium

characteristic: isolation-source

text: 51.9740275 N 113.8051889 W

text: Stutzerimonas degradans

text: unpublished

text: MIGS Cultured Bacterial/Archaeal sample from Stutzerimonas degradans


text: herbs

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: FDA

characteristic: collected by

text: USA:CA

text: italian parsley

characteristic: isolation source

text: italian:ANCESTRO_0307| parsley leaf:FOODON_00002942

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: FDA Center for Food Safety and Applied Nutrition

characteristic: sequenced by

text: food

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


characteristic: External Id

text: environmental

text: FDA/CFSAN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: fda lab id

text: USA:CA

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

text: Listeria monocytogenes

characteristic: organism

characteristic: pfge primary enzyme pattern

text: GenomeTrakr

text: environmental

characteristic: title


text: CSIRO

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

characteristic: culture collection

text: Czech Republic

characteristic: geo loc name

text: hexachlorocyclohexane-contaminated soil

text: Sphingobium cupriresistens LL01

text: Microbe sample from Sphingobium cupriresistens LL01

text: type strain of Sphingobium czechense

characteristic: type material


text: University of Delhi

text: live

text: MIGS.ba

text: JANF

characteristic: common name

characteristic: culture-collection

text: 10 cm

characteristic: depth

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: 120 m.

characteristic: elev

text: soil

characteristic: environment biome

text: shrubs

characteristic: feature

text: India: Lucknow, Unmari Village

text: CTAB method, growth on LB Agar

text: soil from hexachlorocyclohexane (HCH) dumpsite

characteristic: isolation-source

text: 26.87 N 80.95 E

characteristic: lat lon

text: soil

characteristic: material

text: Sphingobium indicum F2

text: Under Submission

text: MIGS Cultured Bacterial/Archaeal sample from Sphingobium indicum F2

text: type strain of Sphingobium lucknowense


characteristic: External Id

text: University of Missouri - Columbia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: ATCC 27339

characteristic: biomaterial provider

text: Friis NF

characteristic: collected by

text: Mycoplasma flocculare strain Ms42 for sequencing and comparative genomic analysis

text: Denmark

text: pig

characteristic: host

text: lung

text: pig with catarrhal pneumonia

characteristic: isolation source

text: Mesomycoplasma flocculare ATCC 27399

characteristic: organism

characteristic: strain

text: Microbe sample from Mesomycoplasma flocculare ATCC 27399

characteristic: title

text: type strain of Mycoplasma flocculare


text: MBT, Fraunhofer IGB

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: filaments

characteristic: morphology

text: Moesziomyces aphidis

text: soybean oil induced

text: DSM 70725

text: soybean oil induced

characteristic: treatment

text: type material of Sterigmatomyces aphidis

characteristic: type material


characteristic: External Id

text: MBT, Fraunhofer IGB

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: blastospores

text: Moesziomyces aphidis

text: not induced

text: DSM 70725

text: not induced


text: environmental-water

characteristic: IFSAC+ Category

text: FDA/CFSAN

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: University of Florida

characteristic: collection date

text: USA:GA

characteristic: geo loc name

text: water pond

text: pond water:ENVO_00002228

characteristic: ontological term

text: Salmonella enterica

text: environmental

characteristic: source type

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: environmental-water

text: FDA/CFSAN

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: University of Florida

characteristic: collected by

text: USA:GA

text: sediment

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: environmental

characteristic: strain

characteristic: title


Aspergillus fumigatus Myb1 KO

text: Vanderbilt University

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: France: Paris

text: 48.51 N 2.20 E

text: Aspergillus fumigatus

text: Microbe sample from Aspergillus fumigatus


Aspergillus fumigatus KU80

characteristic: External Id

text: Vanderbilt University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: France: Paris

text: 48.51 N 2.20 E

text: Aspergillus fumigatus


text: NCGR

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS.eu

text: no

characteristic: axenic

text: Jan Pawlowski

characteristic: biomaterial provider

text: yes

characteristic: clonal

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: 4 umol/L

text: 10 hr

text: 1/8 Erdschreiber media plus filtered sea water

text: 247 (umol photons/m^2/s)

text: 14 hr

text: 12 umol/L

text: 2 umol/L

text: Chlorella sp., bacteria, diatoms

text: 35 psu

text: 1 umol/L

text: 22 C

text: 15 nmol/L

text: Rosalina sp.

text: Jan

text: Pawlowski

text: Marine microbial eukaryote transcriptome sequencing project

characteristic: project name

text: MIGS Eukaryotic sample from Rosalina sp.


text: NCGR

characteristic: INSDC secondary accession

text: live

text: MIGS.eu

text: yes

text: Nadathur Govind

text: yes

text: Keywords: GSC:MIxS;MIGS:6.0

text: 0 umol/L

text: 0 ml/L

text: Yeast-Peptone-Dextrose (2% each) Broth

text: 287 (umol photons/m^2/s)

text: 0 umol/L

text: 0 umol/L

text: 0 umol/L

text: 25 C

text: 0 nmol/L

text: Debaryomyces hansenii

text: Nadathur

text: Govind

text: MIGS Eukaryotic sample from Debaryomyces hansenii


text: NCGR

text: live

text: MIGS.eu

text: yes

text: Nadathur Govind

text: yes

text: Keywords: GSC:MIxS;MIGS:6.0

text: 0 umol/L

text: 0 ml/L

text: Yeast-Peptone-Dextrose (2% each) Broth

text: 707 (umol photons/m^2/s)

text: 5 mmol/L CoSO4*7H2O added at early log phase

text: 0 umol/L

text: 0 umol/L

text: 0 umol/L

text: 25 C

text: 0 nmol/L

text: Debaryomyces hansenii

characteristic: organism

text: Nadathur

text: Govind


text: NCGR

text: live

text: MIGS.eu

text: yes

text: Nadathur Govind

text: yes

text: Keywords: GSC:MIxS;MIGS:6.0

text: 0 umol/L

text: 0 ml/L

text: Yeast-Peptone-Dextrose Broth

text: 223 (umol photons/m^2/s)

text: 0 umol/L

text: 0 umol/L

text: 0 umol/L

text: 25 C

text: 0 nmol/L

text: Debaryomyces hansenii

text: Nadathur

text: Govind

characteristic: strain


text: NCGR

text: live

text: MIGS.eu

text: yes

text: Nadathur Govind

text: yes

text: Keywords: GSC:MIxS;MIGS:6.0

text: 0 umol/L

text: 0 ml/L

text: Yeast-Peptone-Dextrose Broth

text: 609 (umol photons/m^2/s)

text: 0 umol/L

text: 0 umol/L

text: 0 umol/L

text: 25 C

text: 0 nmol/L

text: Debaryomyces hansenii

text: Nadathur

text: Govind

characteristic: title


text: Plant and Food Research, Genomics

text: live

text: Generic

characteristic: NCBI submission model

characteristic: collection-date

text: AOKP

characteristic: common name

text: Japan: Shizuoka

characteristic: country

text: Actinidia

characteristic: nat-host

text: actinidiae

characteristic: pathovar

text: ICMP 9617

text: Sample from Pseudomonas syringae pv. actinidiae ICMP 9617

text: pathotype strain of Pseudomonas syringae pv. actinidiae

characteristic: type material


characteristic: External Id

text: Burton Lab, Marine Biology Research Division, Scripps Institution of Oceanography

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Slide Ranch, Marin County

characteristic: location

text: Tegula funebralis

text: northern CA

characteristic: population

text: whole animal

text: whole animal

characteristic: tissue

text: SR T2


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: Slide Ranch, Marin County

text: Tegula funebralis

characteristic: organism

text: northern CA

text: whole animal

text: whole animal

text: SR C1

characteristic: title


text: live

text: Generic

text: Pigeon Point, San Mateo County

text: Tegula funebralis

text: northern CA

text: whole animal

text: whole animal

text: PP T1


text: live

text: Generic

text: Aliso Beach, Orange County

text: Tegula funebralis

text: southern CA

text: whole animal

text: whole animal

text: AB C2


text: live

text: Generic

text: Slide Ranch, Marin County

text: Tegula funebralis

text: northern CA

text: whole animal

text: whole animal

text: SR C2


text: live

text: Generic

text: Pigeon Point, San Mateo County

text: Tegula funebralis

text: northern CA

text: whole animal

text: whole animal

text: PP T2


text: live

text: Generic

text: Pigeon Point, San Mateo County

text: Tegula funebralis

text: northern CA

text: whole animal

text: whole animal

text: PP C1


text: live

text: Generic

text: La Jolla, San Diego County

text: Tegula funebralis

text: southern CA

text: whole animal

text: whole animal

text: LJ C1


text: live

text: Generic

text: La Jolla, San Diego County

text: Tegula funebralis

text: southern CA

text: whole animal

text: whole animal

text: LJ T2


text: live

text: Generic

text: Slide Ranch, Marin County

text: Tegula funebralis

text: northern CA

text: whole animal

text: whole animal

text: SR T1


text: live

text: Generic

text: La Jolla, San Diego County

text: Tegula funebralis

text: southern CA

text: whole animal

text: whole animal

text: LJ T1


text: live

text: Generic

text: Aliso Beach, Orange County

text: Tegula funebralis

text: southern CA

text: whole animal

text: whole animal

text: AB C1


text: live

text: Generic

text: Pigeon Point, San Mateo County

text: Tegula funebralis

text: northern CA

text: whole animal

text: whole animal

text: PP C2


text: live

text: Generic

text: Aliso Beach, Orange County

text: Tegula funebralis

text: southern CA

text: whole animal

text: whole animal

text: AB T2


text: live

text: Generic

text: Aliso Beach, Orange County

text: Tegula funebralis

text: southern CA

text: whole animal

text: whole animal

text: AB T1


text: live

text: Generic

text: La Jolla, San Diego County

text: Tegula funebralis

text: southern CA

text: whole animal

text: whole animal

text: LJ C2


text: environmental

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

text: environmental/food/other

characteristic: collection date

text: USA:WA

characteristic: geo loc name

text: environment

characteristic: isolation source

text: environmental system:envo_01000254

characteristic: ontological term

text: Vibrio parahaemolyticus

text: GenomeTrakr

characteristic: project name

text: FDA Center for Food Safety and Applied Nutrition

characteristic: sequenced by

characteristic: serovar

text: environmental

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Vibrio parahaemolyticus


FSL L3-0257

characteristic: External Id

text: environmental

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: Pathogen bacterial, environmental sample

characteristic: description

text: USA

text: food associated environment

text: food:CHEBI_33290, environmental system:ENVO_01000254

text: Listeria monocytogenes

text: environmental

text: FSL L3-0257

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: Biochemistry and Molecular Biology, Saint Louis University School of Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: one of three replicates

characteristic: biological replicate

text: wild-tye Kn99a

characteristic: genotype

text: Cryptococcus neoformans

characteristic: organism

text: RNA isolated from cells growing in YPD+sorbitol at 30 degress

text: wild-tye Kn99a Kn99_a

characteristic: title


text: live

text: Generic

text: one of three replicates

text: MKK2 deletion in KN99a background

text: Cryptococcus neoformans

text: MKK2 deletion in KN99a background Mkk2_j


text: live

text: Generic

text: one of three replicates

text: BCK1 deletion in KN99a background

text: Cryptococcus neoformans

text: BCK1 deletion in KN99a background Bck1_g


text: live

text: Generic

text: third of three replicates

text: wild-tye Kn99a

text: Cryptococcus neoformans

text: wild-tye Kn99a Kn99_c


text: live

text: Generic

text: third of three replicates

text: BCK1 deletion in KN99a background

text: Cryptococcus neoformans

text: BCK1 deletion in KN99a background Bck1_i


text: live

text: Generic

text: one of three replicates

text: MPK1 deletion in KN99a background

text: Cryptococcus neoformans

text: MPK1 deletion in KN99a background Mpk1_m


text: live

text: Generic

text: third of three replicates

text: MKK2 deletion in KN99a background

text: Cryptococcus neoformans

text: MKK2 deletion in KN99a background Mkk2_l


text: live

text: Generic

text: second of three replicates

text: wild-tye Kn99a

text: Cryptococcus neoformans

text: wild-tye Kn99a Kn99_b


text: live

text: Generic

text: third of three replicates

text: MPK1 deletion in KN99a background

text: Cryptococcus neoformans

text: MPK1 deletion in KN99a background Mpk1_o


text: live

text: Generic

text: second of three replicates

text: MKK2 deletion in KN99a background

text: Cryptococcus neoformans

text: MKK2 deletion in KN99a background Mkk2_k


text: live

text: Generic

text: second of three replicates

text: MPK1 deletion in KN99a background

text: Cryptococcus neoformans

text: MPK1 deletion in KN99a background Mpk1_n


text: live

text: Generic

text: second of three replicates

text: BCK1 deletion in KN99a background

text: Cryptococcus neoformans

text: BCK1 deletion in KN99a background Bck1_h


text: University of Wisconsin

text: live

text: Microbe, viral or environmental

text: ATCC

characteristic: biomaterial provider

characteristic: culture collection

text: drinking water

characteristic: isolation source

text: ATCC 23216

text: Microbe sample from Leclercia adecarboxylata ATCC 23216 = NBRC 102595

text: type strain of Escherichia adecarboxylata

characteristic: type-material


characteristic: External Id

text: NIH

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: Mutant Replicate A

text: H99_Cryptococcus_neoformans_2203_cdc24_a

characteristic: isolate

text: Cryptococcus neoformans

characteristic: strain

text: 2203_cdc24_a_Mutant Replicate A


text: NIH

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission package

text: Mutant Replicate B

text: H99_Cryptococcus_neoformans_2204_cdc24_b

text: Cryptococcus neoformans

text: 2204_cdc24_b_Mutant Replicate B


text: NIH

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: SRA accession

text: Mutant Replicate A

characteristic: description

text: H99_Cryptococcus_neoformans_2205_cdc42_420_a

text: Cryptococcus neoformans

text: 2205_cdc42_420_a_Mutant Replicate A


text: NIH

text: live

text: Pathogen.cl

text: Mutant Replicate B

text: H99_Cryptococcus_neoformans_2206_cdc42_420_b

text: Cryptococcus neoformans

characteristic: organism

text: 2206_cdc42_420_b_Mutant Replicate B

characteristic: title


text: NIH

text: live

text: Pathogen.cl

text: WT grown in 20% O2 rep A

text: Cryptococcus neoformans

text: 2207_HN_a_WT grown in 20% O2 rep A


text: NIH

text: live

text: Pathogen.cl

text: WT grown in 20% O2 rep B

text: Cryptococcus neoformans

text: 2208_HN_b_WT grown in 20% O2 rep B


text: NIH

text: live

text: Pathogen.cl

text: Mutant Replicate A

text: Cryptococcus neoformans

text: 2209_ras_a_Mutant Replicate A


text: NIH

text: live

text: Pathogen.cl

text: Mutant Replicate B

text: Cryptococcus neoformans

text: 2210_ras_b_Mutant Replicate B


text: NIH

text: live

text: Pathogen.cl

text: WT grown in 1% O2 rep A

text: Cryptococcus neoformans

text: 2211_H99_a_WT grown in 1% O2 rep A


text: NIH

text: live

text: Pathogen.cl

text: WT grown in 1% O2 rep B

text: Cryptococcus neoformans

text: 2212_H99_b_WT grown in 1% O2 rep B


text: NIH

text: live

text: Pathogen.cl

text: Mutant Replicate A

text: Cryptococcus neoformans

text: 2213_ptp3_a_Mutant Replicate A


text: NIH

text: live

text: Pathogen.cl

text: Mutant Replicate B

text: Cryptococcus neoformans

text: 2214_ptp3_b_Mutant Replicate B


characteristic: GOLD Stamp ID

text: Prodigal 2.5

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

text: DOE Joint Genome Institute

text: live

text: Generic

text: Yes

characteristic: Type Strain

text: JMKZ

characteristic: common name

characteristic: culture-collection

text: Lab culture

characteristic: environment

characteristic: investigation type

text: Tissue culture

characteristic: isolation site

text: Mycoplasmoides pirum ATCC 25960

text: Mycoplasma pirum ATCC 25960

characteristic: project name

text: ATCC 25960

text: WGS

text: ATCC 25960

text: Sample from Mycoplasmoides pirum ATCC 25960

text: type strain of Mycoplasma pirum

characteristic: type material


characteristic: External Id

text: University of Delhi

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission package

characteristic: collection date

text: 10 cm

characteristic: depth

text: Keywords: GSC:MIxS;MIGS:6.0

text: 120 metres

characteristic: elev

text: Soil

characteristic: environment biome

text: Shrubs

characteristic: feature

text: India: Lucknow

characteristic: geo loc name

text: CTAB Method, growth on LB Agar

text: 26.87 N 80.95 E

characteristic: lat lon

text: Soil

characteristic: material

text: Sphingobium indicum F2

text: Under Submission

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Sphingobium indicum F2

text: type strain of Sphingobium lucknowense


text: DOE-CSP 2012

characteristic: Funding Program

characteristic: GOLD Stamp ID

text: Prodigal 2.5

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Yes

characteristic: Type Strain

text: vpAllpaths v. r46652

characteristic: assembly

text: JHYE

characteristic: common name

characteristic: culture-collection

text: Host; Bird

characteristic: environment

characteristic: investigation type

text: Adult chicken oviduct

characteristic: isolation site

text: Mycoplasmopsis glycophila ATCC 35277

characteristic: organism

text: Mycoplasma glycophilum ATCC 35277

characteristic: project name

text: ATCC 35277

text: WGS

text: ATCC 35277

text: Sample from Mycoplasmopsis glycophila ATCC 35277

characteristic: title


characteristic: External Id

text: Prodigal 2.5

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: HGAP v. 2.0.1

text: JIAL

text: Pseudacidobacterium ailaaui

text: Acidobacterium sp. PMMR2

text: WGS

characteristic: strain

text: Sample from Pseudacidobacterium ailaaui

text: type strain of Acidobacterium ailaaui

characteristic: type material


characteristic: GOLD Stamp ID

text: Prodigal 2.5

characteristic: Gene Calling Method

text: Gram-

characteristic: Gram Staining

text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Yes

characteristic: Type Strain

text: vpAllpaths v. r46652

characteristic: assembly

text: JHXQ

text: Plants

text: Rhizobium undicola ATCC 700741

text: ORS 992

text: WGS

text: ATCC 700741

text: Sample from Allorhizobium undicola ORS 992 = ATCC 700741

text: type strain of Allorhizobium undicola


text: DOE-CSP 2012

characteristic: Funding Program

text: Prodigal 2.5

text: Gram-

text: DOE Joint Genome Institute

text: live

text: Generic

text: Yes

text: vpAllpaths v. r46652

text: JHWG

characteristic: common name

characteristic: culture-collection

text: Host

characteristic: environment

characteristic: investigation type

text: Throat of dog

characteristic: isolation site

text: Mesomycoplasma molare ATCC 27746

characteristic: organism

text: Mycoplasma molare ATCC 27746

characteristic: project name

text: ATCC 27746

text: WGS

text: ATCC 27746

text: Sample from Mesomycoplasma molare ATCC 27746

characteristic: title

text: type strain of Mycoplasma molare