text: fish

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: FDA

text: USA:MI

characteristic: geo loc name

text: CFSAN-Kal-E; CFSAN034657

text: vacuum packed whole smoked whitefish chub

text: Clostridium botulinum

text: E

text: food

text: Group II

characteristic: subgroup

text: BoNT

characteristic: toxin


status: PUBLIC

characteristic: External Id

text: UTEX, Plant Biology, University of Texas

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Thermosynechococcus vestitus

characteristic: organism

text: GEO accession GSM1716932 is currently private and is scheduled to be released on Jun 22, 2015.

characteristic: title


text: seeded vegetables (legumes)| sprouts

tag: attribute

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: environmental/food/other

text: VA

characteristic: collected by

characteristic: collection date

text: USA:VA

text: soybean sprout

characteristic: isolation source

text: soybean (whole):FOODON_03301415|sprout:FOODON_03420183

characteristic: ontological term

text: Listeria monocytogenes

text: environmental/food/other

characteristic: package

text: food

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: beans| sprouts

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: environmental/food/other

text: VA

text: USA:VA

characteristic: geo loc name

text: mung bean sprout

text: mung bean whole:FOODON_03301275| bean sprout:FOODON_00002576

text: Listeria monocytogenes

text: environmental/food/other

text: food


characteristic: External Id

text: environmental

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

characteristic: fda lab id

text: USA:FL

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Southeast Food and Feed Laboratory

characteristic: sequenced by

text: environmental


name: Peat soil microbial communities from Weissenstadt, Germany - itags

text: Environmental | Terrestrial | Soil | Wetlands | Peat

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: Germany: Weissenstadt

text: Peat Soil

text: 50.13 N 11.88 E

characteristic: lat lon

text: soil metagenome

characteristic: organism

characteristic: title


text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FLUFL

characteristic: collected by

text: USA:FL

text: river water

characteristic: isolation source

text: river water:ENVO_01000599

characteristic: ontological term

text: Salmonella enterica

text: environmental

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Salmonella enterica


characteristic: External Id

text: environmental

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

characteristic: NCBI submission model

text: FDA Contracted Laboratory

text: USA:CA

characteristic: geo loc name

characteristic: isolate name alias

text: environmental swab

text: Listeria monocytogenes

text: environmental


text: environmental-factory/production facility

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:WA

text: environmental swab sponge

text: environmental (swab or sampling):GENEPIO_0001732| environmental sponge:CURATION_0000359

text: Listeria monocytogenes

characteristic: organism

text: environmental

characteristic: title


characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:WA

text: environmental sponge

characteristic: isolation source

text: Listeria monocytogenes


text: environmental

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:KY

text: environmental

characteristic: ontological term

text: Listeria monocytogenes

text: environmental

characteristic: source type

characteristic: strain


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:GA

text: environmental swab sponge

text: Listeria monocytogenes

text: environmental


text: live

characteristic: Isolate name alias

text: Pathogen.env

characteristic: NCBI submission model

text: FDA Contracted Laboratory

text: USA:OH

characteristic: geo loc name

characteristic: isolate name alias

text: environmental sponge

text: Listeria monocytogenes


text: environmental

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:WA

text: environmental swab

text: Listeria monocytogenes

characteristic: organism

text: environmental


text: environmental

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:AZ

text: environmental swab

characteristic: isolation source

text: Listeria monocytogenes

text: environmental

characteristic: title


text: pome fruit

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:WA

text: apple core

text: apple (whole):FOODON_00002473| core:IAO_0000224

characteristic: ontological term

text: Listeria monocytogenes

text: food

characteristic: source type

characteristic: strain


characteristic: External Id

text: vegetable row crops (leafy)

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:CA

text: spinach

text: spinach (whole, raw):FOODON_03301716

text: Listeria monocytogenes

text: environmental/food/other

characteristic: package

text: food


text: root/underground (bulbs)

text: live

characteristic: Isolate name alias

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:WA

characteristic: geo loc name

characteristic: isolate name alias

text: onion

text: onion (whole, raw):FOODON_03301704

text: Listeria monocytogenes

text: environmental/food/other

text: food


characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:NC

text: environmental swab sponge

text: Listeria monocytogenes

characteristic: organism

text: environmental


text: environmental

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:GA

text: environmental swab

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

text: environmental

characteristic: source type

characteristic: title


characteristic: External Id

text: environmental

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:RI

text: environmental swab

text: Listeria monocytogenes

text: environmental

characteristic: strain


text: environmental

text: live

characteristic: Isolate name alias

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA Contracted Laboratory

text: USA:AZ

characteristic: geo loc name

text: environmental

text: Listeria monocytogenes

text: environmental


characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA Contracted Laboratory

text: USA:AZ

characteristic: isolate name alias

text: environmental

text: Listeria monocytogenes


text: environmental

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:CA

text: environmental swab

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: environmental


characteristic: External Id

text: herbs| vegetable row crops (leafy)

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:AZ

text: mizuna

text: japanese mustard plant:FOODON_03413747

characteristic: ontological term

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: food

characteristic: source type

characteristic: title


text: vegetable row crops (leafy)

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:AZ

text: arugula

text: arugula greens (raw):FOODON_00002426

text: Salmonella enterica

text: environmental/food/other

text: food

characteristic: strain


text: vegetable row crops (leafy)

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:AZ

characteristic: geo loc name

text: tango lettuce

text: Salmonella enterica

text: food


text: vegetable row crops (leafy)

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:AZ

characteristic: isolate name alias

text: arugula

characteristic: isolation source

text: arugula greens (raw):FOODON_00002426

text: Salmonella enterica

text: environmental/food/other

text: food


characteristic: External Id

text: vegetable row crops (leafy)

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:AZ

text: spinach

text: spinach (whole, raw):FOODON_03301716

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: environmental/food/other

characteristic: package

text: food


text: vegetable row crops (leafy)

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:AZ

text: chard

text: swiss chard (raw):FOODON_03306698

text: Salmonella enterica

text: environmental/food/other

text: food

characteristic: source type

characteristic: title


text: vegetables

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:WA

characteristic: geo loc name

text: vegetable

text: vegetable food product:FOODON_00001261

text: Salmonella enterica

text: environmental/food/other

text: food

characteristic: strain


characteristic: External Id

text: nuts

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:CA

characteristic: isolate name alias

text: almond

characteristic: isolation source

text: almond (whole, raw):FOODON_03301355

text: Salmonella enterica

text: environmental/food/other

text: food


text: clinical/research| human

characteristic: INSDC first public

text: live

text: Pathogen.cl

characteristic: SRA accession

text: FDA Contracted Laboratory

text: USA:WA

text: Homo sapiens

characteristic: host

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: human

text: Pathogen: clinical or host-associated sample from Salmonella enterica


text: vegetable row crops (leafy)

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:AZ

text: romaine lettuce

text: Salmonella enterica

text: food

characteristic: source type

characteristic: title


text: vegetable row crops (leafy)

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:AZ

characteristic: geo loc name

text: lettuce

text: lettuce vegetable food product:FOODON_00001998

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: food


characteristic: External Id

text: veterinary clinical/research| wild animal

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:WA

text: turtle rectal swab

characteristic: isolation source

text: Salmonella enterica

text: animal

characteristic: strain


characteristic: INSDC first public

text: live

text: Pathogen.cl

text: FDA Contracted Laboratory

text: USA:WA

characteristic: isolate name alias

text: turtle rectal swab

text: Salmonella enterica

characteristic: organism


text: meat

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

characteristic: SRA accession

text: FDA Contracted Laboratory

text: USA:CA

text: carcass swab

text: carcass:UBERON_0008979, swab:NCIT_C17627

characteristic: ontological term

text: Salmonella enterica

text: animal


text: nuts, seeded vegetables (legumes)

characteristic: IFSAC Category

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: FDA Contracted Laboratory

text: USA:GA

text: peanut

text: peanut (whole):FOODON_00003206

text: Salmonella enterica

text: environmental/food/other

text: food

characteristic: source type

characteristic: title


characteristic: External Id

text: nuts| seeded vegetables (legumes)

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:GA

characteristic: geo loc name

text: peanut

text: peanut (whole):FOODON_00003206

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: food


text: nuts

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:TX

characteristic: isolate name alias

text: walnut

characteristic: isolation source

text: walnut (whole, raw):FOODON_03315233

text: Salmonella enterica

characteristic: organism

text: environmental/food/other

text: food

characteristic: strain


text: nuts

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:TX

text: walnut

text: walnut (whole, raw):FOODON_03315233

characteristic: ontological term

text: Salmonella enterica

text: environmental/food/other

text: food


text: nuts

characteristic: IFSAC Category

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: FDA Contracted Laboratory

text: USA:CA

text: almond

text: almond (whole, raw):FOODON_03301355

text: Salmonella enterica

text: environmental/food/other

text: food

characteristic: source type

characteristic: title


characteristic: External Id

text: animal feed

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:CA

characteristic: geo loc name

text: pet food dog

text: dog food:FOODON_03302645, pet food:FOODON_00002682

text: Salmonella enterica

text: environmental


text: animal feed

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:CA

characteristic: isolate name alias

text: cat food

characteristic: isolation source

text: cat food:foodon_03305097

text: Salmonella enterica

characteristic: organism

text: environmental

characteristic: strain


text: nuts

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:CA

text: pistachio

text: pistachio nut (whole, raw):FOODON_03301825

characteristic: ontological term

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: food


text: nuts

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:WA

text: macadamia nut

text: macadamia nut:FOODON_00003003

text: Salmonella enterica

text: environmental/food/other

text: food

characteristic: source type

characteristic: title


characteristic: External Id

text: beef

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:MN

characteristic: geo loc name

text: boneless beef

text: beef food product:FOODON_00001041

text: Salmonella enterica

text: environmental/food/other

text: food


text: beef

characteristic: IFSAC Category

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:MN

characteristic: isolate name alias

text: boneless beef

characteristic: isolation source

text: beef food product:FOODON_00001041

text: Salmonella enterica

characteristic: organism

text: environmental/food/other

text: food

characteristic: strain


text: grains

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:NE

text: flour

characteristic: ontological term

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: food


characteristic: External Id

text: grains

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: FDA Contracted Laboratory

text: USA:NE

text: flour

text: Salmonella enterica

text: environmental/food/other

text: food

characteristic: source type

characteristic: title


text: root/underground (bulbs)

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:WA

characteristic: geo loc name

text: garlic powder

text: garlic powder:FOODON_03301844

text: Salmonella enterica

text: environmental/food/other

text: food


text: root/underground (bulbs)

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:CO

characteristic: isolate name alias

text: garlic powder

characteristic: isolation source

text: garlic powder:FOODON_03301844

text: Salmonella enterica

characteristic: organism

text: environmental/food/other

text: food

characteristic: strain


text: nuts

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:WA

text: hazelnut

characteristic: ontological term

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: food


characteristic: External Id

text: nuts

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: FDA Contracted Laboratory

text: USA:WA

text: macadamia nut

text: macadamia nut:FOODON_00003003

text: Salmonella enterica

text: environmental/food/other

text: food


text: nuts

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:CO

text: walnut

text: walnut (whole, raw):FOODON_03315233

text: Salmonella enterica

text: environmental/food/other

text: food

characteristic: source type

characteristic: title


text: chicken

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:WA

characteristic: geo loc name

text: chicken

text: Salmonella enterica

text: environmental/food/other

text: food


text: nuts

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:WA

characteristic: isolate name alias

text: walnut

characteristic: isolation source

text: walnut (whole, raw):FOODON_03315233

text: Salmonella enterica

text: environmental/food/other

text: food


text: beef

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:NE

text: boneless beef

text: beef food product:FOODON_00001041

text: Salmonella enterica

characteristic: organism

text: environmental/food/other

text: food

characteristic: strain


text: nuts

text: live

characteristic: Isolate name alias

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:TX

text: macadamia nut

text: macadamia nut:FOODON_00003003

characteristic: ontological term

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: food


name: Peat soil microbial communities from Weissenstadt, Germany - cDNA itags

characteristic: External Id

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: Germany: Weissenstadt

text: Peat Soil

text: 50.13 N 11.88 E

characteristic: lat lon

text: soil metagenome


text: Genomics of Gene Expression Lab, Centro de Investigación Príncipe Felipe

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: experiment

text: Pre

characteristic: growth condition

text: Aspergillus fumigatus

text: Mycelium

text: ATCC 46645

text: Mycelium

characteristic: tissue

text: pre r1

characteristic: title


text: live

characteristic: INSDC status

text: Generic

text: Human Blood

text: Aspergillus fumigatus

characteristic: organism

text: Mycelium

text: ATCC 46645

characteristic: strain

text: Mycelium

text: B30 r1


characteristic: External Id

text: live

text: Generic

text: Human Blood

text: Aspergillus fumigatus

text: Mycelium

text: ATCC 46645

text: Mycelium

text: B180 r1


text: live

text: Generic

text: Human Blood

text: Aspergillus fumigatus

text: Mycelium

text: ATCC 46645

text: Mycelium

text: B180 r2


text: live

text: Generic

text: Human Blood

text: Aspergillus fumigatus

text: Mycelium

text: ATCC 46645

text: Mycelium

text: B30 r2


text: live

text: Generic

text: Minimal Medium

text: Aspergillus fumigatus

text: Mycelium

text: ATCC 46645

text: Mycelium

text: M180 r2


text: live

text: Generic

text: Minimal Medium

text: Aspergillus fumigatus

text: Mycelium

text: ATCC 46645

text: Mycelium

text: M30 r2


text: live

text: Generic

text: Pre

text: Aspergillus fumigatus

text: Mycelium

text: ATCC 46645

text: Mycelium

text: pre r2


text: live

text: Generic

text: Minimal Medium

text: Aspergillus fumigatus

text: Mycelium

text: ATCC 46645

text: Mycelium

text: M180 r1


text: live

text: Generic

text: Minimal Medium

text: Aspergillus fumigatus

text: Mycelium

text: ATCC 46645

text: Mycelium

text: M30 r1


text: seeded vegetables (solanaceous)

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

text: USA:ID

characteristic: geo loc name

text: CFSAN-TJI-A; CFSAN034898

text: tomato juice

characteristic: isolation source

text: tomato juice:FOODON_03301454

characteristic: ontological term

text: Clostridium botulinum

text: environmental/food/other

characteristic: package

text: A

characteristic: serotype

text: food

characteristic: source type

text: Group I

characteristic: subgroup

text: Pathogen: environmental/food/other sample from Clostridium botulinum

text: BoNT

characteristic: toxin


text: clinical/research, human

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NY State Dept. Health

text: USA:NY

text: Homo sapiens

characteristic: host

text: stool

text: Salmonella enterica

text: GenomeTrakr

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text: muenchen

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text: nuts

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text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: FDA

characteristic: collected by

text: USA:MD

text: raw cashew nut

text: cashew nut (whole, raw):FOODON_03301357

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text: environmental/food/other

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text: raw macadamia nut

text: macadamia nut (whole, raw):FOODON_03306521

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characteristic: organism

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characteristic: source type

characteristic: strain


characteristic: External Id

text: multi-ingredient| other (flavoring or seasoning)| seeded vegetables (solanaceous)

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

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text: environmental/food/other

text: FDA

characteristic: fda lab id

text: USA:CO

text: spice medium hot chili molido

text: spice:FOODON_03303380| chili powder:FOODON_03302030

text: Salmonella enterica

text: environmental/food/other

text: GenomeTrakr

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

text: food

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text: environmental

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text: environmental swab

characteristic: isolation source

text: environmental (swab or sampling):GENEPIO_0001732

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text: environmental

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: animal feed

characteristic: INSDC center name

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text: Brazil

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text: pet treat stick

text: pet treat:GENEPIO_0001056

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text: dog treat

text: dog treat:foodon_00002712

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text: sub-tropical fruit

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characteristic: fda lab id

text: Mexico

text: hass avocado

text: hass avocado:FOODON_00002982

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text: Universidad Andres Bello

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text: Chile

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text: amniotic fluid:UBERON_0000173

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text: IIa

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text: human

text: Pathogen: clinical or host-associated sample from Listeria monocytogenes


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text: live

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text: Universidad Andres Bello

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text: cerebrospinal fluid:uberon_0001359

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text: cerebrospinal fluid:uberon_0001359

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text: human


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text: Universidad Andres Bello

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characteristic: title


characteristic: External Id

text: pork

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characteristic: INSDC first public

text: live

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text: Universidad Andres Bello

text: Chile

text: ham

characteristic: isolation source

text: ham food product:FOODON_00002502

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text: environmental/food/other

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text: IIa

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text: food


text: multi-ingredient| meat

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text: live

characteristic: INSDC status

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characteristic: NCBI submission model

text: environmental/food/other

text: Universidad Andres Bello

text: Chile

text: bologna sausage

text: bologna:foodon_03306503| sausage (formed):foodon_03315904

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characteristic: project name

characteristic: sequenced by

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characteristic: collected by

characteristic: collection date

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characteristic: geo loc name

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text: ice cream food product:foodon_00001045

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characteristic: strain

characteristic: title


characteristic: External Id

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characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Andres Bello

text: Chile

text: bologna sausage

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: environmental/food/other

characteristic: package

text: GenomeTrakr

text: IIc

text: food


text: multi-ingredient, pork

characteristic: IFSAC Category

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: Universidad Andres Bello

text: Chile:Araucana

text: pork pate

text: pork meat food product:FOODON_00001038, pate:FOODON_03315925

text: Listeria monocytogenes

text: environmental/food/other

text: GenomeTrakr

characteristic: project name

text: IIc

characteristic: serovar

text: food


text: multi-ingredient| pork| poultry

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: Universidad Andres Bello

characteristic: collected by

characteristic: collection date

text: Chile

characteristic: geo loc name

text: smoked turkey ham

text: turkey (smoked):foodon_03311736| ham (smoked):foodon_03302180

text: Listeria monocytogenes

text: environmental/food/other

text: GenomeTrakr

characteristic: sequenced by

text: IIc

text: food

characteristic: source type


characteristic: External Id

text: multi-ingredient| pork

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Andres Bello

text: Chile

text: dried cured ham

characteristic: isolation source

text: ham (cured):foodon_03301114| food (dried):foodon_03307539

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: environmental/food/other

text: GenomeTrakr

text: food

characteristic: strain

characteristic: title


text: multi-ingredient| diary

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Universidad Andres Bello

text: Chile

text: ice cream

text: ice cream food product:foodon_00001045

text: Listeria monocytogenes

text: environmental/food/other

characteristic: package

text: GenomeTrakr

characteristic: project name

text: food


text: environmental

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: Universidad Andres Bello

characteristic: collected by

characteristic: collection date

text: Chile

characteristic: geo loc name

text: food processing environment

text: food:chebi_33290| environmental system:envo_01000254

text: Listeria monocytogenes

text: GenomeTrakr

text: IIa

characteristic: serovar

text: environmental


characteristic: External Id

text: environmental

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Andres Bello

text: Chile

text: food processing environment

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: sequenced by

text: IIc

text: environmental

characteristic: source type


text: clinical/research, human

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: Universidad Andres Bello

text: Chile:Bio-Bio

text: Homo sapiens

characteristic: host

text: cerebrospinal fluid

text: cerebrospinal fluid:UBERON_0001359

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: human

characteristic: strain

characteristic: title


text: clinical/research| human

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: clinical/host-associated

text: Universidad Andres Bello

characteristic: collected by

characteristic: collection date

text: Chile

characteristic: geo loc name

text: Homo sapiens

text: blood

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: IVb

text: human


characteristic: External Id

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Universidad Andres Bello

text: Chile

text: Homo sapiens

text: blood

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: sequenced by

text: IIa

characteristic: serovar

text: human


text: pork

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Universidad Andres Bello

text: Chile

text: pork pate

text: swine:foodon_03411136| pate:foodon_03315925

text: Listeria monocytogenes

characteristic: organism

text: environmental/food/other

characteristic: package

text: GenomeTrakr

text: IVb

text: food

characteristic: source type


text: multi-ingredient| meat

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: Universidad Andres Bello

characteristic: collected by

characteristic: collection date

text: Chile

text: sausage

text: sausage (formed):foodon_03315904

text: Listeria monocytogenes

text: environmental/food/other

text: GenomeTrakr

text: IIc

text: food

characteristic: strain

characteristic: title


characteristic: External Id

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Universidad Andres Bello

text: Chile

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: cerebrospinal fluid

characteristic: isolation source

text: cerebrospinal fluid:uberon_0001359

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: IVb

text: human


text: clinical/research, human

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: Universidad Andres Bello

text: Chile:Santiago

text: Homo sapiens

text: blood

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: sequenced by

text: IVb

characteristic: serovar

text: human


text: clinical/research, human

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: Universidad Andres Bello

characteristic: collected by

characteristic: collection date

text: Chile:Valparaiso

text: Homo sapiens

text: cerebrospinal fluid

text: cerebrospinal fluid:UBERON_0001359

text: Listeria monocytogenes

text: GenomeTrakr

text: IVb

text: human

characteristic: source type

characteristic: strain


characteristic: External Id

text: clinical/research, human

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: Universidad Andres Bello

text: Chile:Ohiggins

characteristic: geo loc name

text: Homo sapiens

text: blood

text: Listeria monocytogenes

text: GenomeTrakr

text: IIa

text: human

characteristic: title


text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: Universidad Andres Bello

text: Chile

text: Homo sapiens

characteristic: host

text: peritoneal fluid

characteristic: isolation source

text: peritoneal fluid:UBERON_0001268

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: IIa

text: human


text: multi-ingredient| pork| poultry

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Universidad Andres Bello

text: Chile

text: smoked turkey ham

text: Listeria monocytogenes

characteristic: organism

text: environmental/food/other

characteristic: package

text: GenomeTrakr

characteristic: sequenced by

text: IIa

characteristic: serovar

text: food


characteristic: External Id

text: beef

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Andres Bello

characteristic: collected by

characteristic: collection date

text: Chile

characteristic: geo loc name

text: beef

text: beef food product:foodon_00001041

text: Listeria monocytogenes

text: environmental/food/other

text: GenomeTrakr

text: IIc

text: food

characteristic: source type

characteristic: strain


text: dairy

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: Universidad Andres Bello

text: Chile

text: cheese

characteristic: isolation source

text: cheese food product:foodon_00001013

characteristic: ontological term

text: Listeria monocytogenes

text: environmental/food/other

text: GenomeTrakr

characteristic: project name

text: IVb

text: food

characteristic: title


text: environmental

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Wisconsin State Laboratory of Hygiene

text: USA:WI

text: environmental

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: sequenced by

text: environmental


characteristic: External Id

text: dairy

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: New York State Department of Agriculture and Markets

characteristic: collected by

characteristic: collection date

text: Listeria monocytogenes sample

characteristic: description

text: USA:NY

text: raw milk

text: cow milk (raw):foodon_03307455

text: Listeria monocytogenes

text: food

text: Listeria monocytogenes sample


text: multi-ingredient| meat

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: Listeria monocytogenes sample

text: USA:NY

characteristic: geo loc name

text: sausage

text: sausage (formed):foodon_03315904

text: Listeria monocytogenes

text: food

characteristic: source type

characteristic: strain

text: Listeria monocytogenes sample


text: mollusks (non-bi-valve)

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: fda lab id

text: India

text: frozen octopus

characteristic: isolation source

text: frozen:PATO_0001985|octopus:FOODON_03411514

characteristic: ontological term

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: GenomeTrakr

characteristic: project name

text: food

characteristic: title


characteristic: External Id

text: seeds

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

text: Bulgaria

text: sunflower seed

text: sunflower seed (whole kernel|raw):FOODON_03304869

text: Salmonella enterica

characteristic: organism

text: environmental/food/other

text: GenomeTrakr

characteristic: sequenced by

text: food


text: animal feed

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

text: USA:WI

characteristic: geo loc name

text: pet food dog

text: dog food:FOODON_03302645, pet food:FOODON_00002682

text: Listeria monocytogenes

text: GenomeTrakr

text: United States Food and Drug Administration|Office of Regulatory Affairs|Southeast Food and Feed Laboratory

text: Animal feed

characteristic: source type

characteristic: strain


text: fish

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: fda lab id

text: Taiwan

text: frozen whole bass fish

characteristic: isolation source

text: fish (frozen):FOODON_03301083|bass food product:FOODON_00001634|whole:FOODON_03430131

characteristic: ontological term

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Pacific Southwest Food and Feed Laboratory

text: food


characteristic: External Id

text: fish

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

text: Netherlands

text: smoked halibut fish

text: fish (smoked):FOODON_03301318|halibut (smoked):FOODON_03308069

text: Listeria monocytogenes

text: environmental/food/other

text: GenomeTrakr

text: food

characteristic: title


text: environmental

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: collection date

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: sequenced by

text: environmental

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: mollusks (non-bi-valve)

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: fda lab id

text: Philippines

characteristic: geo loc name

text: frozen raw whole octopus

characteristic: isolation source

text: frozen:PATO_0001985|whole:FOODON_03430131|octopus (raw):FOODON_03310498|f

text: Salmonella enterica

text: environmental/food/other

text: GenomeTrakr

text: food

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Salmonella enterica


characteristic: External Id

text: fish

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:CA

text: salmon

text: salmon food product:FOODON_00002220

characteristic: ontological term

text: Listeria monocytogenes

text: environmental/food/other

characteristic: package

text: GenomeTrakr

characteristic: project name

text: food


text: fish

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

text: USA

text: salmon

text: salmon food product:FOODON_00002220

text: Listeria monocytogenes

text: environmental/food/other

text: GenomeTrakr

text: food

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

characteristic: body site

text: HMB-IRB-MDS

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from blood_for_SNP_EXOME of a human female participant in the dbGaP study NHLBI Framingham SNP Health Association Resource (SHARe)


characteristic: External Id

text: dbGaP

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

text: HMB-IRB-MDS

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

text: DNA sample from blood_for_SNP_EXOME of a human male participant in the dbGaP study NHLBI Framingham SNP Health Association Resource (SHARe)


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: HMB-IRB-MDS

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

text: NHLBI Framingham SNP Health Association Resource (SHARe)

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: HMB-IRB-MDS

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: body site

text: HMB-IRB-MDS

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Prospective Longitudinal Cohort

text: DNA sample from cellline_for_SNP_EXOME of a human male participant in the dbGaP study NHLBI Framingham SNP Health Association Resource (SHARe)


text: dbGaP

text: live

text: Generic

text: DNA

text: HMB-IRB-NPU-MDS

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

text: DNA sample from blood_for_Array_SNP of a human female participant in the dbGaP study NHLBI Framingham SNP Health Association Resource (SHARe)


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: HMB-IRB-MDS

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

characteristic: submitted subject id

characteristic: submitter handle

text: DNA sample from cellline_for_SNP_EXOME of a human female participant in the dbGaP study NHLBI Framingham SNP Health Association Resource (SHARe)


text: dbGaP

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: HMB-IRB-NPU-MDS

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

text: DNA sample from blood_for_Array_SNP of a human male participant in the dbGaP study NHLBI Framingham SNP Health Association Resource (SHARe)


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

text: DNA

text: HMB-IRB-NPU-MDS

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: HMB-IRB-NPU-MDS

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

characteristic: body site

text: HMB-IRB-MDS

text: Homo sapiens

characteristic: organism

text: male

text: Prospective Longitudinal Cohort


text: dbGaP

text: live

text: Generic

text: DNA

text: HMB-IRB-NPU-MDS

text: Homo sapiens

text: female

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: HMB-IRB-NPU-MDS

text: Homo sapiens

text: male

text: Prospective Longitudinal Cohort

characteristic: submitted sample id

characteristic: submitted subject id


text: dbGaP

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: DNA

text: HMB-IRB-MDS

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

characteristic: submitter handle


BCRE

text: University of Zurich

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: SRA accession

characteristic: collection date

text: Belgium: Botanic Garden Meise

characteristic: geo loc name

text: Ardisia crenata

characteristic: host

text: leaf nodules

characteristic: isolation source

text: Candidatus Burkholderia crenata

text: mixed culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Candidatus Burkholderia crenata


Malapachy

characteristic: External Id

text: Universidad de los Andes

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: culture-collection

text: Sweden

text: dog

text: otitis externa

characteristic: host disease

text: ear

text: 62.0000 N 15.0000 E

characteristic: lat lon

text: Malassezia pachydermatis

characteristic: organism

text: CBS 1879

text: Pathogen: clinical or host-associated sample from Malassezia pachydermatis

characteristic: title

text: culture from neotype of Pityrosporum pachydermatis

characteristic: type material


text: crustaceans

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:WA

characteristic: isolate name alias

text: frozen crab

text: frozen:PATO_0001985|crab:FOODON_03411335

characteristic: ontological term

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: food

characteristic: source type


characteristic: External Id

text: clinical/research, human

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:OR

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: Escherichia coli

characteristic: serovar

text: human

characteristic: strain

text: Pathogen: clinical or host-associated sample from Escherichia coli


text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

characteristic: SRA accession

text: FDA Contracted Laboratory

text: USA:OR

text: Homo sapiens

text: Escherichia coli

characteristic: organism

text: human

characteristic: title


text: environmental-factory/production facility

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:OR

characteristic: isolate name alias

text: surface wipe bathroom toilet

characteristic: isolation source

text: bathroom:ENVO_01000422| surface wipe:CURATION_0001482

characteristic: ontological term

text: Escherichia coli

text: environmental

text: Pathogen: environmental/food/other sample from Escherichia coli


characteristic: External Id

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:OR

characteristic: geo loc name

text: surface wipe; bathroom sink

text: Escherichia coli


characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:OR

text: surface wipe bathroom

text: Escherichia coli

characteristic: serovar

text: environmental

characteristic: source type

characteristic: strain


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA Contracted Laboratory

text: USA:OR

text: surface wipe bathroom floor

text: bathroom:ENVO_01000422| floor:CURATION_0000335| surface wipe:CURATION_0001482

text: Escherichia coli

characteristic: organism

text: environmental

characteristic: title


text: veterinary clinical/research| other animal

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:OR

characteristic: isolate name alias

text: feces goat

characteristic: isolation source

text: feces:UBERON_0001988, goat:FOODON_03411328

text: Escherichia coli

text: animal


characteristic: External Id

text: environmental-water

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:OR

text: water and dirt mixture

text: water:CHEBI_15377, mixture:CHEBI_60004

characteristic: ontological term

text: Escherichia coli

text: environmental


text: Universite de Lyon

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: Pseudomonas paraeruginosa

text: Pathogen: clinical or host-associated sample from Pseudomonas paraeruginosa


text: herbs| other (flavoring or seasoning)

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: fda lab id

text: India

characteristic: geo loc name

text: coriander powder

text: coriander food product:FOODON_00001763| food powdered:FOODON_00002976

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

text: food

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: dairy

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA

text: Greece

text: cheese

text: cheese food product:FOODON_00001013

text: Listeria monocytogenes

characteristic: organism

text: environmental/food/other

text: food

text: Pathogen: environmental/food/other sample from Listeria monocytogenes

characteristic: title


characteristic: External Id

text: melon fruit

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

characteristic: collection date

text: Mexico

text: cantaloupe

characteristic: isolation source

text: Salmonella enterica

text: food


text: environmental

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: fda lab id

text: USA:HI

characteristic: geo loc name

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Pacific Northwest Laboratory

text: environmental


text: Environmental | Terrestrial | Deep subsurface | Rock core/Sediment | Unclassified

characteristic: GOLD Ecosystem Classification

text: Banfield Lab, University of California, Berkeley

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: USA: Rifle, CO

text: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

text: 39.5369 N 107.7828 W

characteristic: lat lon

text: groundwater metagenome

text: Metagenome or environmental sample from groundwater metagenome


characteristic: External Id

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: SRA accession

text: USA: Rifle, CO

text: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

text: 39.5369 N 107.7828 W

text: groundwater metagenome

characteristic: organism

characteristic: title


characteristic: INSDC center name

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

text: USA: Rifle, CO

text: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point D

characteristic: isolation source

text: 39.5369 N 107.7828 W

text: groundwater metagenome


name: Serpentinite rock and fluid subsurface biosphere microbial communities from Coast Range Ophiolite, California, USA - itags

text: Environmental | Terrestrial | Deep subsurface | Unclassified | Unclassified

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: USA: Coast Range Ophiolite, California

characteristic: geo loc name

text: Serpentinite rock and fluid

text: 38.862 N 122.414 W

text: subsurface metagenome

text: Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - itags


name: Alkali sediment microbial communities from Soda Lake, CA, USA - Reactor TP_S13sol

text: Environmental | Aquatic | Non-marine Saline and Alkaline | Alkaline | Sediment

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Netherlands

text: bioreactor in Netherlands

text: 52.002 N 4.371 E

text: bioreactor metagenome

text: Alkaline sediment microbial communities from bioreactor in Netherlands - Reactor TP_S13sol


name: Alkali sediment microbial communities from Soda Lake, CA, USA - 7KL_010_BRINE

text: Environmental | Aquatic | Non-marine Saline and Alkaline | Lake | Brine

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Russia: Kulunda Steppe, Lake Tanatar

text: lake brine water

text: 51.37 N 79.5 E

text: soda lake metagenome

text: Alkaline brine water microbial communities from Lake Tanatar, Kulunda Steppe, Russia - 7KL_010_BRINE


name: Alkali sediment microbial communities from Soda Lake, CA, USA - 4KL_010_BRINE

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Russia: Kulunda Steppe, Picturesque Lake

text: lake brine water

text: 51.43 N 79.52 E

text: soda lake metagenome

text: Alkaline brine water microbial communities from Picturesque Lake, Kulunda Steppe, Russia - 4KL_010_BRINE


name: Alkali sediment microbial communities from Soda Lake, CA, USA - 8KL_010_SED

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Russia: Kulunda Steppe, Lake Tanatar

text: lake sediment

text: 51.39 N 79.48 E

text: soda lake metagenome

text: Alkaline sediment microbial communities from Lake Tanatar, Kulunda Steppe, Russia - 8KL_010_SED


name: Alkali sediment microbial communities from Soda Lake, CA, USA - Reactor TP_S2

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Germany

text: bioreactor in Germany

text: 53.109 N 8.845 E

text: bioreactor metagenome

text: Alkaline sediment microbial communities from bioreactor in Germany - Reactor TP_S2


name: Alkali sediment microbial communities from Soda Lake, CA, USA - TP_S3

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Germany

text: bioreactor in Germany

text: 53.109 N 8.845 E

text: bioreactor metagenome

text: Alkaline sediment microbial communities from bioreactor in Germany - TP_S3


name: Alkali sediment microbial communities from Soda Lake, CA, USA - 3KL_010_SED

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Russia: Kulunda Steppe, Cock Lake

text: lake sediment

text: 52.06 N 79.09 E

text: soda lake metagenome

text: Alkaline sediment microbial communities from Cock Soda Lake, Kulunda Steppe, Russia - 3KL_010_SED


name: Alkali sediment microbial communities from Soda Lake, CA, USA - 5KL_010_BRINE

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Russia: Kulunda Steppe, Lake Bitter

text: lake brine water

text: 51.4 N 79.54 E

text: soda lake metagenome

text: Alkaline brine water microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_BRINE


name: Alkali sediment microbial communities from Soda Lake, CA, USA - 3KL_010_SOIL

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Russia: Kulunda Steppe

text: alkaline soda soil

text: 52.98 N 82.1 E

text: soil metagenome

text: Alkaline soda soil microbial communities from Kulunda Steppe, Russia - 3KL_010_SOIL


name: Alkali sediment microbial communities from Soda Lake, CA, USA - 9KL_010_SED

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Russia: Kulunda Steppe, Lake Tanatar

text: lake sediment

text: 51.39 N 79.48 E

text: soda lake metagenome

text: Alkaline sediment microbial communities from Lake Tanatar, Kulunda Steppe, Russia - 9KL_010_SED


name: Alkali sediment microbial communities from Soda Lake, CA, USA - 2KS_010_SOIL

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Russia: Kulunda Steppe

text: alkaline soda soil

text: 52.1 N 79.14 E

text: soil metagenome

text: Alkaline soda soil microbial communities from Kulunda Steppe, Russia - 2KS_010_SOIL


name: Alkali sediment microbial communities from Soda Lake, CA, USA - 1KL_011_SED

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Russia: Kulunda Steppe, Cock Lake

text: lake sediment

text: 52.06 N 79.09 E

text: soda lake metagenome

text: Alkaline sediment microbial communities from Cock Soda Lake, Kulunda Steppe, Russia - 1KL_011_SED


name: Alkali sediment microbial communities from Soda Lake, CA, USA - 6KL_011_BRINE

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Russia: Kulunda Steppe

text: Soda crystalizer brine water

text: 51.64 N 79.73 E

text: soda lake metagenome

text: Alkaline brine water microbial communities from Soda crystalizer, Kulunda Steppe, Russia - 6KL_011_BRINE


name: Alkali sediment microbial communities from Soda Lake, CA, USA - 5KL_010_SED

text: Joint Genome Institute

text: live

text: Metagenome or environmental

text: Russia: Kulunda Steppe, Lake Bitter

text: lake sediment

text: 51.4 N 79.54 E

text: soda lake metagenome

text: Alkaline sediment microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_SED


text: environmental-water

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: FLUFL

characteristic: collected by

text: USA:FL

text: river water

text: river water:ENVO_01000599

characteristic: ontological term

text: Salmonella enterica

text: environmental

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: Middle Tennessee State University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: Candidatus Berkiella aquae (HT99) is a small coccobacillus that was isolated from an amoeba in the biofilm of a hot tub. The organism does not grow on conventional laboratory medium but grows in the amoeba host, Acanthamoeba polyphaga.

characteristic: description

text: USA: Tennessee

text: Acanthamoeba polyphaga

characteristic: host

text: outdoor hot tub

text: 36.1600 N 85.5016 W

text: Candidatus Berkiella aquae

text: monoisolate

characteristic: sample type

text: Candidatus Berkiella aquae HT99


Methanoculleus taiwanensis CYW4

characteristic: External Id

text: National Chung Hsing University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: SRA accession

text: Prof. Mei-Chin Lai, National Chung Hsing University, Taichung, Taiwan, R.O.C.

characteristic: biomaterial provider

text: Ding-Ju Chen

characteristic: culture collection

text: sediment

characteristic: env biome

text: Taiwan

text: Chieh-Yin Weng, Mei-Chin Lai

characteristic: identified by

text: marine sediment 68-114 cm below the seafloor around the deformation front 1624 m below sea level offshore of south-western Taiwan

text: 21.9675 N 119.72783333 E

characteristic: lat lon

text: Methanoculleus taiwanensis

characteristic: organism

text: pure isolate

text: Microbe sample from Methanoculleus taiwanensis

characteristic: title

text: type strain of Methanoculleus taiwanensis

characteristic: type material


text: vegetable row crops (leafy)

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: India

characteristic: geo loc name

text: fennel ground

characteristic: isolation source

text: fennel (food product):FOODON_03309953|food (ground):FOODON_00002713

characteristic: ontological term

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Pacific Southwest Food and Feed Laboratory

characteristic: sequenced by

text: food

characteristic: source type

characteristic: strain


characteristic: External Id

text: University of Wisconsin-Madison

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: Patagonia B

characteristic: ecotype

characteristic: env biome

characteristic: env feature

text: Bark

characteristic: estimated size

text: Argentina: Lanin

text: Nothofagus obliqua

characteristic: host

text: PMID: 25743785

characteristic: isolate

text: 40.14900 S 71.49942 W

characteristic: lat lon

text: Saccharomyces eubayanus

characteristic: organism

characteristic: ploidy

text: eukaryote: asexual

characteristic: propagation

text: CRUB 1761

text: MIGS Eukaryotic sample from Saccharomyces eubayanus

characteristic: title


characteristic: External Id

text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

characteristic: collection date

text: USA:WV

characteristic: geo loc name

text: water

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: environmental

characteristic: source type

characteristic: strain


text: environmental-water

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: USA:VA

text: water

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: environmental


characteristic: External Id

text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:VA

text: water

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: title


text: environmental-water

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

text: USA:VA

text: sediment

text: Salmonella enterica

text: GenomeTrakr

text: environmental


text: environmental-water

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:VA

characteristic: geo loc name

text: sediment

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: environmental


text: environmental-water

characteristic: INSDC last update

text: live

text: Pathogen.env

text: USA:WV

text: water

text: Salmonella enterica

text: GenomeTrakr

characteristic: sequenced by

text: environmental

characteristic: source type

characteristic: strain


text: environmental-water

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USA:WV

text: sediment

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: environmental


characteristic: External Id

text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: Pathogen.env

text: USA:WV

text: sediment

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: title


text: environmental-water

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

text: USA:VA

text: water

text: Citrobacter youngae

text: GenomeTrakr

text: environmental

text: Pathogen: environmental/food/other sample from Citrobacter youngae


text: environmental-water

text: live

text: Pathogen.env

text: USA:VA

characteristic: geo loc name

text: water

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: environmental


text: environmental-water

characteristic: INSDC last update

text: live

text: Pathogen.env

text: USA:WV

text: water

text: Citrobacter braakii

text: GenomeTrakr

characteristic: sequenced by

text: environmental

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Citrobacter braakii


text: environmental-water

text: live

characteristic: INSDC status

text: Pathogen.env

text: USA:VA

text: sediment

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: environmental


characteristic: External Id

text: Host-associated | Arthropoda: Insects | Digestive system | Midgut | Unclassified

characteristic: GOLD Ecosystem Classification

text: Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: Panama

text: refuse piles of leaf-cutter ants

text: 9.116667 N 79.7 W

characteristic: lat lon

text: insect gut metagenome


name: Panchlora gut microbial communities from Gamboa, Panama - Panchlora_hindgut_metagenome

text: Host-associated | Arthropoda: Insects | Digestive system | Hindgut | Unclassified

text: Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Panama: Gamboa Forest

text: refuse piles of leaf-cutter ants

text: 9.116667 N 79.7 W

text: insect gut metagenome

characteristic: title


text: vegetable row crops (stem)

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: USA:CO

characteristic: geo loc name

text: microgreen

characteristic: isolation source

text: plant fruit vegetable food product:FOODON_00002141

characteristic: ontological term

text: Salmonella enterica

text: environmental/food/other

characteristic: package

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

text: food


characteristic: External Id

text: multi-ingredient| poultry

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:CO

text: breaded chicken breast nugget

text: chicken breaded:FOODON_03311864|chicken breast:FOODON_00002703|chicken nugget:FOODON_00002672

text: Salmonella enterica

characteristic: organism

text: environmental/food/other

text: GenomeTrakr

characteristic: sequenced by

text: food

characteristic: source type

characteristic: strain


text: animal feed

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: FDA

text: USA:CO

text: beef dog chews

text: beef food product:FOODON_00001041| dog chews:CURATION_0001374

text: Salmonella enterica

text: GenomeTrakr

text: Animal feed

characteristic: title