text: environmental

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

characteristic: Isolate name alias

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:OR

characteristic: geo loc name

text: environmental swab

characteristic: isolation source

text: environmental (swab or sampling):GENEPIO_0001732

text: Listeria monocytogenes

text: environmental

characteristic: source type


status: PUBLIC

characteristic: External Id

text: The University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mexico

tag: attribute

text: horse

characteristic: host

text: lung

text: Prescottella equi

characteristic: organism

text: Culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Prescottella equi

characteristic: title


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

characteristic: culture-collection

text: Canada: Ontario

text: horse

text: lung

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

text: S. Petry

characteristic: collected by

characteristic: collection date

text: France

text: horse

text: lung

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

text: S. Petry

text: Japan

characteristic: geo loc name

text: Homo sapiens

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

text: S. Petry

text: France: Normandy

text: Equus caballus

text: Nasal discharge

characteristic: isolation source

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


characteristic: External Id

text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

text: L. Makrai

text: Hungary: Miskolc

text: Homo sapiens

text: blood

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: nuts

characteristic: IFSAC Category

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: Isolate name alias

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:CA

text: pistachio

text: pistachio nut (whole, raw):FOODON_03301825

characteristic: ontological term

text: Salmonella enterica

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: The University of Edinburgh

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: L. Makrai

text: Hungary: Oroshaza

text: Equus caballus

characteristic: host

text: Mesenteric lymph node

text: Prescottella equi

characteristic: organism

text: Culture

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

text: L. Makrai

characteristic: collected by

text: Hungary: Csokm, Fuzesgyarmat

characteristic: geo loc name

text: Sus

text: Submaxillary lymph node

text: Prescottella equi

text: Culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Prescottella equi

characteristic: title


characteristic: External Id

text: clinical/research, human

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: clinical/host-associated

text: FLUFL

characteristic: collection date

text: Haiti

text: Homo sapiens

text: feces

characteristic: isolation source

text: Salmonella enterica

text: human

text: Pathogen: clinical or host-associated sample from Salmonella enterica


text: The University of Edinburgh

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: L. Makrai

text: Hungary: Korosszentapati, Kamut, Mez Gyan

text: Sus

text: Submaxillary lymph node

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: M. Pate

text: Slovenia

text: Sus

text: lymph node

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: F. Quidgley

text: Ireland

text: Bos taurus

text: Submaxillary lymph node

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: KMUST

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: SRA accession

text: Z.S. Mao

text: China: Yanshan County, Wenshan

text: Panax notoginseng

characteristic: isolate

text: root tuber

text: 23.44 N 104.34000000 E

characteristic: lat lon

text: Ilyonectria destructans

text: Ilyonectria destructans


text: KMUST

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: Y.J. Long

characteristic: collected by

text: China: Yanshan County, Wenshan

characteristic: geo loc name

text: Panax notoginseng

text: root tuber

text: 23.31 N 104.19000000 E

text: Ilyonectria destructans

characteristic: organism

text: Ilyonectria destructans var. destructans


characteristic: External Id

text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

text: Australia

text: Equus caballus

characteristic: host

text: Gastrointestine

text: Prescottella equi

text: Culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Prescottella equi

characteristic: title


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: DNA

characteristic: analyte type

text: NICHD Epigenetic Analysis Malnutrition

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: BLOOD

characteristic: body site

text: HMB-IRB

text: Peripheral blood mononuclear cells

characteristic: histological type

text: Homo sapiens

text: male

characteristic: sex

text: Clinical Trial

characteristic: study design

text: Stunting

characteristic: study disease

text: Epigenetic Analysis of Malnutrition

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

text: NICHD Epigenetic Analysis Malnutrition

characteristic: submitter handle

text: DNA sample from BLOOD of a human male participant in the dbGaP study Epigenetic Analysis of Malnutrition


Chronic infection

characteristic: External Id

text: Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: chronic

characteristic: collection date

text: Russia: Moscow

characteristic: geo loc name

text: laboratory

characteristic: host

text: Mycoplasmoides gallisepticum S6

characteristic: organism

text: cell culture

characteristic: sample type

characteristic: strain

text: Mycoplasma gallisepticum genome after chronic infection


characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: Isolate name alias

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:TX

text: environmental

characteristic: isolation source

text: Listeria monocytogenes

text: Pathogen: environmental/food/other sample from Listeria monocytogenes

characteristic: title


characteristic: External Id

text: KRIBB

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

text: industrial wastewater

text: Wickerhamiella infanticola

text: whole organism

text: Microbe sample from Wickerhamiella infanticola

type: replaced by


text: Agriculural Research Council

text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 2 months

characteristic: age

text: USDA-NGRP, www.ars-grin.gov

characteristic: biomaterial provider

text: Nigeria

text: Amaranthus cruentus

text: Leaf chloroplast

text: Leaf

characteristic: tissue

text: Ames 2056


text: Agriculural Research Council

text: live

text: Plant

characteristic: SRA accession

text: 2 months

text: USDA-NGRP, www.ars-grin.gov

text: USA

characteristic: geo loc name

text: Amaranthus cruentus

characteristic: organism

text: Leaf chloroplast

text: Leaf

text: Ames 5313


text: Agriculural Research Council

characteristic: INSDC center name

text: live

text: Plant

text: 2 months

text: USDA-NGRP, www.ars-grin.gov

text: India

text: Amaranthus cruentus

text: Leaf chloroplast

characteristic: sample type

text: Leaf

text: PI 566897


Sample D - oomycete treatment

text: Rajiv Gandhi Center for Biotechnology

characteristic: INSDC first public

text: live

text: Plant

text: Panniyur 1

characteristic: cultivar

text: second leaf

characteristic: dev stage

text: India:Thiruvananthapuram

text: Piper nigrum

text: Leaf

text: oomycete Treatment 6hpi


Sample E - oomycete treatment

characteristic: External Id

text: Rajiv Gandhi Center for Biotechnology

text: live

text: Plant

text: Panniyur 1

text: second leaf

text: India:Thiruvananthapuram

text: Piper nigrum

text: Leaf

text: oomycete Treatment 12hpi

characteristic: title


text: The University of Edinburgh

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: Canada

text: Bos taurus

characteristic: host

text: Prescottella equi

text: Culture

characteristic: strain

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Netherlands

text: Equus caballus

text: lung

characteristic: isolation source

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

text: Steeve Giguere

characteristic: collected by

text: USA: Kentucky

text: Equus caballus

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

text: Steeve Giguere

text: USA: Florida

characteristic: geo loc name

text: Equus caballus

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: The University of Georgia

characteristic: INSDC secondary accession

text: live

text: Viral

characteristic: SRA accession

characteristic: collection date

text: Australia: Darling Downs

text: Microplitis demolitor

text: pooled laboratory 2

characteristic: isolate

text: UGA laboratory culture

text: Bracoviriform demolitoris

characteristic: organism

text: Microplitis demolitor ovary DNA sequencing


MdBV

text: The University of Georgia

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Viral

text: Australia: Darling Downs

text: Microplitis demolitor

text: pooled laboratory 1

text: UGA laboratory culture

text: Bracoviriform demolitoris

text: Microplitis demolitor bracovirus sequencing pooled laboratory 1


AUS

characteristic: External Id

text: The University of Georgia

text: live

text: Viral

text: Australia: Darling Downs

text: Microplitis demolitor

text: pooled field

text: sorghum field

text: Bracoviriform demolitoris

text: Microplitis demolitor bracovirus sequencing pooled field

characteristic: title


PINK

text: The University of Georgia

characteristic: INSDC last update

text: live

text: Viral

text: Australia: Darling Downs

text: Microplitis demolitor

characteristic: host

text: individual field-collected

text: sorghum field

text: Bracoviriform demolitoris

text: Microplitis demolitor bracovirus sequencing individual field


text: The University of Edinburgh

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: USA: Florida

text: Equus caballus

text: Prescottella equi

text: Culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Steeve Giguere

text: USA: New York

text: Equus caballus

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

characteristic: culture collection

text: Sweden

characteristic: geo loc name

text: Equus caballus

characteristic: note

text: Prescottella equi

text: Culture

text: DSM 20307

text: Microbe sample from Prescottella equi

text: type strain of Corynebacterium equi

characteristic: type material


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

text: Ch. Lammler

characteristic: collected by

text: Germany

text: Bos taurus

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


P. arizonense soil sample

text: Chalmers University of Technology

characteristic: INSDC secondary accession

text: live

text: MIGS.eu

characteristic: SRA accession

characteristic: collection date

characteristic: culture-collection

text: 1/2 inch

characteristic: depth

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: 6959 feet

characteristic: elev

text: soil

characteristic: env biome

text: dry red soil, no vegetation nearby

characteristic: env feature

text: soil

characteristic: estimated size

text: USA: South rim of Grand Canyon, Grand Canyon Village, Arizona

text: 36 N 112 W

characteristic: lat lon

text: Penicillium arizonense

characteristic: organism

text: haploid

characteristic: ploidy

text: Asexual

characteristic: propagation

text: CBS 141311

text: MIGS Eukaryotic sample from Penicillium arizonense

text: culture from holotype of Penicillium arizonense


characteristic: External Id

text: The University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: John Prescott

text: Canada: Nova Scotia

characteristic: geo loc name

text: Ovis aries

characteristic: host

text: Prescottella equi

text: Culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Prescottella equi

characteristic: title


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

text: Mexico

text: Equus caballus

text: lung

characteristic: isolation source

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


A_ fumigatus_ISSFT-021

text: Jet Propulsion Laboratory, California Institute of Technology

text: live

text: Microbe, viral or environmental

text: HEPA filter from the International Space Station

text: Aspergillus fumigatus

text: dust

text: Microbe sample from Aspergillus fumigatus


text: live

text: Microbe, viral or environmental

characteristic: collection date

text: cupola wall in the International Space Station

text: Aspergillus fumigatus

text: polyester wipe


text: dbGaP

text: live

text: Generic

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Family/Twin/Trios

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Sample from a human female participant in the dbGaP study Genotyping the 270 HapMap Samples for GAIN by Perlegen


characteristic: External Id

text: veterinary clinical/research

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: Pennsylvania State University | Escherichia coli Reference Center

characteristic: collected by

text: USA:SD

text: Sus scrofa

text: CFSAN044405, 12-12368

text: large intestine

text: large intestine:uberon_0000059

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type

text: Pathogen: environmental/food/other sample from Escherichia coli


text: Peking University

text: live

text: Generic

text: Human primed pluripotent stem cells

characteristic: cell type

text: Homo sapiens

characteristic: organism

text: Human primed pluripotent stem cells

characteristic: title


text: Peking University

text: live

text: Generic

text: Human extended pluripotent stem cells

text: Homo sapiens

text: Human extended pluripotent stem cells


text: The University of Edinburgh

text: live

text: Microbe, viral or environmental

text: Australia

characteristic: geo loc name

text: Equus caballus

characteristic: host

text: Prescottella equi

text: Culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Prescottella equi


characteristic: External Id

text: The University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Spain

text: Homo sapiens

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: The University of Edinburgh

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Ireland

text: Bos taurus

text: Prescottella equi

text: Culture

text: Microbe sample from Prescottella equi


text: environmental-water

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

characteristic: collection date

text: USA:PA

text: water

characteristic: isolation source

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: environmental

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: environmental

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

text: USA:PA

text: soil

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: environmental

characteristic: source type

characteristic: title


characteristic: External Id

text: environmental-water

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA

text: USA:PA

characteristic: geo loc name

text: water

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: strain


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:VA

text: creek water

text: Salmonella enterica

text: GenomeTrakr


text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

characteristic: collection date

text: USA:VA

text: creek water

characteristic: isolation source

text: Salmonella enterica

text: GenomeTrakr


text: veterinary clinical/research| cow

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FLUFL

characteristic: collected by

text: USA:FL

text: Bos taurus

characteristic: host

text: fecal calf

text: feces:uberon_0001988| cattle calf:foodon_03411349

characteristic: ontological term

text: Escherichia coli

text: animal


characteristic: External Id

text: veterinary clinical/research| cow

text: live

text: Pathogen.env

text: environmental/food/other

text: FLUFL

text: USA:FL

text: Bos taurus

text: feces calf

text: feces:UBERON_0001988, hindlimb zeugopod:UBERON_0003823

text: Escherichia coli

characteristic: organism

text: animal

characteristic: source type

characteristic: title


text: veterinary clinical/research| cow

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FLUFL

text: USA:FL

characteristic: geo loc name

text: Bos taurus

text: fecal calf

text: Escherichia coli

text: animal

characteristic: strain


text: environmental-water

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: FLUFL

text: USA:FL

text: water

text: Escherichia coli

text: environmental


text: clinical/research| human

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: clinical/host-associated

text: FLUFL

characteristic: collection date

text: USA:FL

text: Homo sapiens

text: feces

characteristic: isolation source

text: Escherichia coli

text: human

text: Pathogen: clinical or host-associated sample from Escherichia coli


text: environmental

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FLUFL

characteristic: collected by

text: USA:FL

text: soil

characteristic: ontological term

text: Escherichia coli

text: environmental


characteristic: External Id

text: plant

text: live

text: Pathogen.env

text: environmental/food/other

text: FLUFL

text: USA:FL

text: forage

text: plant used as fodder:foodon_03413358

text: Escherichia coli

characteristic: organism

text: environmental

characteristic: source type


text: multi-ingredient, seeds

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: fda lab id

text: Turkey

text: sesame seed paste tahini

text: sesame seed paste:FOODON_03304154

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

text: food

characteristic: title


Lactobacillus virulent phage P1

text: Inner Mongolia Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Viral

text: China:Huhhot, Inner Mongolia

characteristic: geo loc name

text: Lactiplantibacillus plantarum

characteristic: host

text: virulent phage

characteristic: isolate

text: The abnormal fermentation liquid of L. plantarum IMAU10120

text: Salchichonvirus LP65

characteristic: strain

text: Lactobacillus virulent phage P1 from the abnormal fermentation liquid of L. plantarum IMAU10120


text: beef

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Dept. Vet. Sciences, UNITO

characteristic: collected by

characteristic: collection date

text: Italy

text: bovine meat

characteristic: isolation source

text: bovine meat food product:FOODON_00001134

text: Listeria welshimeri

text: GenomeTrakr

characteristic: serotype

text: food

text: Pathogen: environmental/food/other sample from Listeria welshimeri


characteristic: External Id

text: pork

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: environmental/food/other

text: Dept. Vet. Sciences, UNITO

text: Italy

text: swine meat

text: swine:FOODON_03411136, meat food product:FOODON_00001006

characteristic: ontological term

text: Listeria innocua

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Listeria innocua


text: animal feed

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: Dept. Vet. Sciences, UNITO

text: Italy

characteristic: geo loc name

text: silage feed

text: silage:envo_00003030, food product for animal:foodon_03309997

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: sequenced by

text: Animal feed

text: Pathogen: environmental/food/other sample from Listeria monocytogenes

characteristic: title


Anopheles sinensis

text: Nanjing Medical University

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 30 days

characteristic: age

text: Anopheles

characteristic: breed

text: Anopheles sinensis

text: pooled male and female

characteristic: sex

text: body

characteristic: tissue

text: Model organism or animal sample from Anopheles sinensis


Candidatus Sulcia muelleri NC

characteristic: External Id

text: Fujian agriculture and forestry university

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Candidatus Sulcia muelleri from Nephotettix cincticeps collected in China

characteristic: description

text: China

text: rice leafhopper

characteristic: host

text: Nephotettix cincticeps

characteristic: isolation source

text: Candidatus Karelsulcia muelleri

characteristic: organism

text: whole organism

characteristic: sample type

text: NC

characteristic: strain

text: Microbe sample from Candidatus Karelsulcia muelleri


text: Institute of Oceanology, Chinese Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: China: Rizhao

characteristic: geo loc name

text: East China Sea

text: Stutzerimonas stutzeri

text: marine sediment

text: Pseudomonas stutzeri isolated from marine sediment


text: environmental-farm

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Centre INRS-Institut Armand-Frappier

characteristic: collected by

text: Canada

text: agricultural soil

text: agricultural soil:ENVO_00002259

characteristic: ontological term

text: Paenibacillus polymyxa

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: environmental

characteristic: source type

text: Pathogen: environmental/food/other sample from Paenibacillus polymyxa

characteristic: title


characteristic: External Id

text: environmental-farm

text: live

text: Pathogen.env

text: environmental/food/other

text: Centre INRS-Institut Armand-Frappier

text: USA:FL

text: agricultural soil

characteristic: isolation source

text: agricultural soil:ENVO_00002259

text: Bacillus velezensis

characteristic: organism

text: GenomeTrakr

text: environmental

text: Pathogen: environmental/food/other sample from Bacillus velezensis


text: environmental-farm

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: Centre INRSDInstitut Armand-Frappier

text: Canada

text: agricultural soil

text: agricultural soil:ENVO_00002259

text: Paenibacillus polymyxa

text: GenomeTrakr

text: environmental

characteristic: strain


text: environmental-farm

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: Centre INRS-Institut Armand-Frappier

text: Canada

text: agricultural soil

text: agricultural soil:ENVO_00002259

text: Bacillus velezensis

text: GenomeTrakr

text: environmental


text: chicken, eggs

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

characteristic: collection date

text: USA:CA

characteristic: geo loc name

text: avian egg (Gallus gallus domesticus)

text: avian egg food product:FOODON_00001105, chicken:FOODON_03411457

text: Escherichia coli

characteristic: serotype

text: food

text: Pathogen: environmental/food/other sample from Escherichia coli


text: veterinary clinical/research| cow

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: Penn State E. coli Reference Center

characteristic: collected by

text: USA:PA

text: feces (Bos taurus)

text: bos taurus:NCBITAXON_9913| feces:UBERON_0001988

text: Escherichia coli

text: animal


characteristic: External Id

text: veterinary clinical/research| other animal

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: cryptic lineage 4

characteristic: genotype

text: USA:CA

text: Pseudois nayaur

characteristic: host

text: rectum blue sheep (Pseudois nayaur)

characteristic: isolation source

text: blue:PATO_0000318| rectum:UBERON_0001052| sheep:FOODON_03411183

characteristic: ontological term

text: Escherichia sp. MOD1-EC6819

text: animal

characteristic: source type

text: Pathogen: environmental/food/other sample from Escherichia sp.

characteristic: title


text: veterinary clinical/research| cow

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: Pennsylvania State University | Escherichia coli Reference Center

characteristic: collection date

text: USA:MI

text: bovine

text: feces (Bos taurus)

text: bos taurus:ncbitaxon_9913| feces:uberon_0001988

text: Escherichia coli

characteristic: organism

text: animal

characteristic: strain


text: veterinary clinical/research, other animal

characteristic: IFSAC+ Category

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:CA

characteristic: geo loc name

text: intestine mhorr gazelle

text: Escherichia coli

text: animal


characteristic: External Id

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: Penn State E. coli Reference Center

characteristic: collected by

text: USA:CA

text: rectum cervidae (Elaphodus cephalophus)

text: cervidae:NCBITAXON_9850, rectum:UBERON_0001052

text: Escherichia coli

text: animal


text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:CA

text: rectum cervidae mandarin sika (Cervus nippon)

characteristic: isolation source

text: Escherichia coli

characteristic: serotype

text: animal


text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:CA

text: rectum mhorr gazelle

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type


text: veterinary clinical/research, cow

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:MI

text: feces (Bos taurus)

text: bos taurus:NCBITAXON_9913, feces:UBERON_0001988

text: Escherichia coli

text: animal

characteristic: title


text: veterinary clinical/research, cow

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:PA

text: feces (Bos taurus)

text: Escherichia coli

text: animal


text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

characteristic: collection date

text: USA:ND

text: feces mink mustelidae

text: feces:UBERON_0001988, mink:FOODON_00002723, mustelidae:NCBITAXON_9655

text: Escherichia coli

characteristic: organism

text: animal


text: veterinary clinical/research, cow

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:PA

text: bovine cow intestine small

text: small intestine:UBERON_0002108, cattle:FOODON_03411161

text: Escherichia coli

text: animal

characteristic: strain


text: veterinary clinical/research, cow

text: FDA Center for Food Safety and Applied Nutrition

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:PA

text: bovine cow intestine

text: cattle:FOODON_03411161, intestine:UBERON_0000160

text: Escherichia coli

text: animal


characteristic: External Id

text: veterinary clinical/research, cow

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:PA

characteristic: geo loc name

text: bovine cow intestine

text: Escherichia coli

text: animal


text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

characteristic: collected by

text: USA:PA

text: Odocoileus virginianus

characteristic: host

text: lung (Odocoileus virginianus)

text: lung:UBERON_0002048, odocoileus virginianus:NCBITAXON_9874

text: Escherichia coli

text: animal


text: live

text: Pathogen.env

text: environmental/food/other

text: USA:PA

text: Odocoileus virginianus

text: spleen (Odocoileus virginianus)

characteristic: isolation source

text: odocoileus virginianus:NCBITAXON_9874, spleen:UBERON_0002106

characteristic: ontological term

text: Escherichia coli

text: animal


text: environmental-water

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:PA

text: water

text: Escherichia coli

characteristic: serotype

text: environmental

characteristic: source type

text: Pathogen: environmental/food/other sample from Escherichia coli


text: veterinary clinical/research, chicken

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:MT

text: avian intestine (Gallus gallus domesticus)

text: chicken:FOODON_03411457, intestine:UBERON_0000160

text: Escherichia coli

text: animal

characteristic: title


text: cow

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

characteristic: collection date

text: USA:MI

text: cow

text: Escherichia coli

characteristic: organism

text: animal


text: cow

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:MI

text: cow

text: Escherichia coli

text: animal

characteristic: strain


characteristic: External Id

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: USA:CA

characteristic: geo loc name

text: european roe

text: cervidae european roe colon

text: cervidae:NCBITAXON_9850, fish roe:FOODON_03305576, colon:UBERON_0001155

text: Escherichia coli

text: animal


text: veterinary clinical/research

text: live

text: Pathogen.env

text: environmental/food/other

characteristic: collected by

text: USA:CA

text: bontebok

characteristic: host

text: feces

characteristic: isolation source

text: Escherichia coli

text: animal


characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:CA

text: alpine ibex

text: goat alpine ibex feces

text: alpine:ENVO_01000340, feces:UBERON_0001988, goat:FOODON_03411328

characteristic: ontological term

text: Escherichia coli

text: animal


characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:TX

text: rectum (Alpine ibex)

text: alpine:ENVO_01000340, rectum:UBERON_0001052

text: Escherichia coli

text: animal

characteristic: source type


text: dairy

characteristic: IFSAC Category

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:PA

text: bovine cow milk

text: cow milk liquid:FOODON_03302116, bovine:FOODON_03414374

text: Escherichia coli

text: food

characteristic: title


text: veterinary clinical/research| companion animal

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: Penn State E. coli Reference Center

characteristic: collection date

text: cryptic lineage 6

characteristic: genotype

text: USA:PA

text: canine

text: canine rectum

text: dog:FOODON_03414847| rectum:UBERON_0001052

text: Escherichia sp. MOD1-EC7003

characteristic: organism

text: animal

text: Pathogen: environmental/food/other sample from Escherichia sp.


characteristic: External Id

text: veterinary clinical/research| other animal

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Penn State E. coli Reference Center

text: cryptic lineage 4

text: USA:NY

characteristic: geo loc name

text: feces seagull

text: feces:UBERON_0001988| gull:FOODON_03413503

text: Escherichia sp. MOD1-EC7011

text: animal

characteristic: strain


text: veterinary clinical/research, cow

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

characteristic: collected by

text: Canada

text: feces (Bos taurus)

characteristic: isolation source

text: bos taurus:NCBITAXON_9913, feces:UBERON_0001988

characteristic: ontological term

text: Escherichia coli

text: animal


text: veterinary clinical/research, cow

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: Canada

text: feces (Bos taurus)

text: Escherichia coli

characteristic: serotype

text: animal

characteristic: source type

characteristic: title


text: veterinary clinical/research| cow

text: live

text: Pathogen.env

text: environmental/food/other

text: Pennsylvania State University | Escherichia coli Reference Center

characteristic: collection date

text: Canada

text: bovine

characteristic: host

text: feces (Bos taurus)

text: bos taurus:ncbitaxon_9913| feces:uberon_0001988

text: Escherichia coli

characteristic: organism

text: animal


characteristic: External Id

text: veterinary clinical/research, cow

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:MO

text: bovine cow intestine small

text: small intestine:UBERON_0002108, cattle:FOODON_03411161

text: Escherichia coli

text: animal


text: clinical/research| human

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: clinical/host-associated

text: Mexico

characteristic: geo loc name

text: Homo sapiens

text: feces

text: Escherichia coli

text: human

characteristic: strain

text: Pathogen: clinical or host-associated sample from Escherichia coli


text: clinical/research, human

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Penn State E. coli Reference Center

characteristic: collected by

text: Mexico

text: Homo sapiens

text: feces

text: Escherichia coli

text: human


text: turkey

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:AK

text: Meleagris sp.

text: avian liver (Meleagris sp.)

characteristic: isolation source

text: avian animal:FOODON_00002616, liver:UBERON_0002107, meleagris:NCBITAXON_9102, species:NCBITAXON_SPECIES

characteristic: ontological term

text: Escherichia coli

text: animal

text: Pathogen: environmental/food/other sample from Escherichia coli


text: veterinary clinical/research, companion animal

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:WY

text: prarie dog

text: CFSAN050337,W-8385 A

text: prairie dog intestine

text: prairie:ENVO_00000260, dog:FOODON_03414847, intestine:UBERON_0000160

text: Escherichia coli

text: animal

characteristic: source type


text: clinical/research| human

text: live

text: Pathogen.cl

text: clinical/host-associated

characteristic: collection date

text: Saudi Arabia

text: Homo sapiens

text: CFSAN050338,17-1 G205

text: feces

text: Escherichia coli

text: human

characteristic: title


text: clinical/research, human

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Penn State E. coli Reference Center

text: Saudi Arabia

text: Homo sapiens

characteristic: host

text: CFSAN050347,39-5 G254

text: feces

text: Escherichia coli

characteristic: organism

text: human


characteristic: External Id

text: clinical/research, human

text: live

characteristic: INSDC status

text: Pathogen.cl

text: clinical/host-associated

text: Penn State E. coli Reference Center

text: Saudi Arabia

text: Homo sapiens

text: CFSAN050351,67-5 G279

text: feces

text: Escherichia coli

text: human


text: clinical/research, human

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: clinical/host-associated

text: Penn State E. coli Reference Center

text: Saudi Arabia

text: Homo sapiens

text: CFSAN050352,18-4 G213

text: feces

text: Escherichia coli

characteristic: serotype

text: human


text: clinical/research, human

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Penn State E. coli Reference Center

text: Saudi Arabia

characteristic: geo loc name

text: Homo sapiens

text: CFSAN050353,19-3 G215

text: feces

text: Escherichia coli

text: human

characteristic: strain


text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: clinical/host-associated

characteristic: collected by

text: Brazil

text: Homo sapiens

text: CFSAN050376,E COLI T 4-12

text: blood

text: Escherichia coli

text: human


text: veterinary clinical/research, other animal

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:PA

text: kidney (Odocoileus virginianus)

characteristic: isolation source

text: kidney:UBERON_0002113, odocoileus virginianus:NCBITAXON_9874

characteristic: ontological term

text: Escherichia coli

text: animal


text: veterinary clinical/research, chicken

text: live

text: Pathogen.env

text: environmental/food/other

characteristic: collection date

text: Mexico

text: Gallus gallus domesticus

text: feces (Gallus gallus domesticus)

text: chicken:FOODON_03411457, feces:UBERON_0001988

text: Escherichia coli

text: animal

characteristic: source type

characteristic: title


characteristic: External Id

text: clinical/research, human

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Penn State E. coli Reference Center

text: USA:MA

text: Homo sapiens

characteristic: host

text: blood

text: Escherichia coli

characteristic: organism

text: human


text: clinical/research| human

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: clinical/host-associated

text: USA:MA

text: Homo sapiens

text: blood

text: Escherichia coli

text: human


text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: clinical/host-associated

text: Penn State E. coli Reference Center

text: Zambia

characteristic: geo loc name

text: Homo sapiens

text: intestine

text: Escherichia coli

characteristic: serotype

text: human


text: clinical/research, human

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Penn State E. coli Reference Center

characteristic: collected by

text: Zambia

text: Homo sapiens

text: intestine

text: Escherichia coli

text: human

characteristic: strain


text: clinical/research, human

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Minnesota Department of Health

characteristic: collection date

text: USA:MN

text: Homo sapiens

text: feces

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica

text: enteritidis

characteristic: serovar

text: human

characteristic: source type

text: Pathogen: clinical or host-associated sample from Salmonella enterica

characteristic: title


characteristic: External Id

text: veterinary clinical/research, cow

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Penn State E. coli Reference Center

text: Canada

text: feces (Bos taurus)

text: Escherichia coli

characteristic: organism

text: animal


text: clinical/research| human

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Mexico

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: feces

text: Escherichia coli

text: human


characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:AL

text: stomach (Equus ferus caballus)

text: equus caballus:NCBITAXON_9796, stomach:UBERON_0000945

text: Escherichia coli

text: animal


text: live

text: Pathogen.env

text: environmental/food/other

characteristic: collected by

characteristic: collection date

text: Hungary

text: lampine

text: caecum domestic rabbit

text: caecum:UBERON_0001153, rabbit:FOODON_03411323

text: Escherichia coli

text: animal

characteristic: strain


text: live

text: Pathogen.env

text: environmental/food/other

text: USA:FL

text: Capra sp.

text: blood goat

characteristic: isolation source

text: blood:UBERON_0000178, goat:FOODON_03411328

characteristic: ontological term

text: Escherichia coli

text: animal


text: live

text: Pathogen.env

text: environmental/food/other

text: USA:MA

text: equine

text: feces (Equus ferus caballus)

text: equus caballus:NCBITAXON_9796, feces:UBERON_0001988

text: Escherichia coli

text: animal

characteristic: source type

characteristic: title


characteristic: External Id

text: FDA Center for Food Safety and Applied Nutrition

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: USA:MI

text: pigeon

text: cloacae

text: Escherichia coli


text: veterinary clinical/research, other poultry

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Pennsylvania State University | Escherichia coli Reference Center

text: USA:MI

text: pigeon

text: brain pigeon

text: brain:UBERON_0000955, pigeon:FOODON_03411304

text: Escherichia coli

text: animal


text: veterinary clinical/research, pig

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:NE

text: porcine

text: porcine pig intestine small

text: small intestine:UBERON_0002108, swine:FOODON_03411136

text: Escherichia coli

characteristic: organism

text: animal


text: veterinary clinical/research, pig

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:PA

characteristic: geo loc name

text: porcine

characteristic: host

text: porcine pig jejunum

text: swine:FOODON_03411136, jejunum:UBERON_0002115

text: Escherichia coli

text: animal


text: veterinary clinical/research, pig

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:NE

text: porcine

text: porcine pig intestine

text: swine:FOODON_03411136, intestine:UBERON_0000160

text: Escherichia coli

text: animal

text: Pathogen: environmental/food/other sample from Escherichia coli


text: veterinary clinical/research, pig

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

characteristic: collected by

text: USA:GA

text: porcine

text: porcine pig test strain

text: swine:FOODON_03411136, exoskeleton:UBERON_0006611, organism strain:NCIT_C14419

text: Escherichia coli

text: animal


text: veterinary clinical/research, pig

text: live

text: Pathogen.env

text: environmental/food/other

characteristic: collection date

text: USA:IA

text: porcine

text: porcine pig intestine small

text: Escherichia coli

text: animal

characteristic: strain


text: veterinary clinical/research, pig

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:PA

text: porcine

text: porcine pig intestine

characteristic: isolation source

characteristic: ontological term

text: Escherichia coli

text: animal


characteristic: DMB

text: chicken

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: Penn State E. coli Reference Center

text: cryptic lineage 3

characteristic: genotype

text: India

text: Gallus gallus domesticus

text: avian heart (Gallus gallus domesticus)

text: chicken:FOODON_03411457, heart:UBERON_0000948

text: Escherichia sp. MOD1-EC6475

text: animal

characteristic: source type

text: Pathogen: environmental/food/other sample from Escherichia Sp.

characteristic: title


characteristic: External Id

text: chicken

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: India

text: Gallus gallus domesticus

text: avian heart (Gallus gallus domesticus)

text: Escherichia coli

characteristic: organism

text: animal


text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

characteristic: collected by

text: India

characteristic: geo loc name

text: Gallus gallus

characteristic: host

text: avian heart (Gallus gallus domesticus)

text: Escherichia coli

text: animal


text: veterinary clinical/research, other animal

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

characteristic: collection date

text: USA:MI

text: feces (Equus ferus caballus)

characteristic: isolation source

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: strain


text: live

text: Pathogen.env

text: environmental/food/other

text: USA:MI

text: equine

text: feces (Equus ferus caballus)

text: Escherichia coli

text: animal

characteristic: source type

characteristic: title


characteristic: External Id

text: veterinary clinical/research, cow

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:PA

text: bovine

text: bovine cow intestine

text: cattle:FOODON_03411161, intestine:UBERON_0000160

text: Escherichia coli

text: animal


text: veterinary clinical/research, cow

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: USA:PA

text: bovine

text: bovine cow intestine small

text: small intestine:UBERON_0002108, cattle:FOODON_03411161

text: Escherichia coli

text: animal


text: veterinary clinical/research| pig

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: USA:NC

text: bovine

text: porcine pig intestine

text: swine:FOODON_03411136| intestine:UBERON_0000160

text: Escherichia coli

characteristic: organism

text: animal


text: beef

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

characteristic: collected by

text: USA:PA

text: bovine

text: bovine cow lung

text: cow lung whole, raw:FOODON_00002710, bovine:FOODON_03414374

text: Escherichia coli

text: animal


text: live

text: Pathogen.env

text: environmental/food/other

characteristic: collection date

text: USA:PA

characteristic: geo loc name

text: rabbit

characteristic: host

text: rabbit feces

characteristic: isolation source

text: feces:UBERON_0001988, rabbit:FOODON_03411323

text: Escherichia coli

text: animal


text: veterinary clinical/research, chicken

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: environmental/food/other

text: India

text: Gallus gallus domesticus

text: avian blood (Gallus gallus domesticus)

text: blood:UBERON_0000178, chicken:FOODON_03411457

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type

characteristic: strain

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Pennsylvania State University | Escherichia coli Reference Center

text: USA:MI

text: Equus caballus

text: feces (Equus ferus caballus)

text: equus caballus:NCBITAXON_9796, feces:UBERON_0001988

text: Escherichia coli

text: animal


text: chicken

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: Penn State E. coli Reference Center

text: USA:PA

text: avian liver (Gallus gallus domesticus)

text: chicken:FOODON_03411457, liver:UBERON_0002107

text: Escherichia coli

characteristic: organism

characteristic: serotype

text: animal


text: veterinary clinical/research

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:PA

text: Gallus gallus domesticus

text: air sac

text: air sac:uberon_0009060

text: Escherichia coli

text: animal


text: dairy

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

characteristic: collected by

characteristic: collection date

text: India

characteristic: geo loc name

text: bovine cow milk

text: cow milk liquid:FOODON_03302116, bovine:FOODON_03414374

text: Escherichia coli

text: food


text: veterinary clinical/research, cow

text: live

text: Pathogen.env

text: environmental/food/other

text: Penn State E. coli Reference Center

text: Canada

text: feces (Bos taurus)

characteristic: isolation source

text: bos taurus:NCBITAXON_9913, feces:UBERON_0001988

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type


characteristic: External Id

text: veterinary clinical/research, pig

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:CO

text: Sus scrofa domesticus

characteristic: host

text: feces (Sus domesticus)

text: feces:UBERON_0001988, swine:FOODON_03411136

text: Escherichia coli

text: animal

characteristic: strain

text: Pathogen: environmental/food/other sample from Escherichia coli

characteristic: title


text: veterinary clinical/research, cow

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: ADRDL, SDSU

text: USA:SD

text: bovine intestine (Bos taurus)

text: bos taurus:NCBITAXON_9913, bovine:FOODON_03414374, intestine:UBERON_0000160

text: Salmonella enterica

text: animal

text: ADRDL 16-5981

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: veterinary clinical/research, other animal

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: ADRDL, SDSU

text: USA:SD

text: lung (Ovis aries)

text: lung:UBERON_0002048, ovis aries:NCBITAXON_9940

text: Salmonella enterica

characteristic: organism

text: animal

text: ADRDL 16-4034


text: veterinary clinical/research, pig

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: ADRDL, SDSU

characteristic: collected by

text: USA:SD

text: pig colon (Sus scrofa domesticus)

text: colon:UBERON_0001155, sus scrofa domesticus:NCBITAXON_9825, swine:FOODON_03411136

text: Salmonella enterica

text: animal


text: veterinary clinical/research, pig

text: live

text: Pathogen.env

text: environmental/food/other

text: ADRDL, SDSU

characteristic: collection date

text: USA:ND

characteristic: geo loc name

text: pig intestine (Sus scrofa domesticus)

text: intestine:UBERON_0000160, sus scrofa domesticus:NCBITAXON_9825, swine:FOODON_03411136

text: Salmonella enterica

text: animal

text: ADRDL 16-4782


text: environmental

text: live

text: Pathogen.env

text: environmental/food/other

text: ISUVDL

text: USA:IA

text: environment

characteristic: isolation source

text: environmental system:ENVO_01000254

characteristic: ontological term

text: Salmonella enterica

text: environmental


characteristic: External Id

text: veterinary clinical/research, pig

text: live

text: Pathogen.env

text: environmental/food/other

text: ADRDL, SDSU

text: USA:MN

text: pig intestine (Sus scrofa domesticus)

text: Salmonella enterica

text: animal

characteristic: source type


text: veterinary clinical/research, cow

text: live

text: Pathogen.env

text: environmental/food/other

text: ADRDL, SDSU

text: USA:MN

text: bovine intestine (Bos taurus)

text: Salmonella enterica

text: animal

characteristic: strain


text: veterinary clinical/research, cow

text: live

text: Pathogen.env

text: environmental/food/other

text: ADRDL, SDSU

text: USA:MN

text: bovine colon (Bos taurus)

text: bos taurus:NCBITAXON_9913, bovine:FOODON_03414374, colon:UBERON_0001155

text: Salmonella enterica

text: animal

characteristic: title


text: veterinary clinical/research, pig

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: ADRDL, SDSU

text: USA:SD

text: pig fecal swab (Sus scrofa domesticus)

text: feces:UBERON_0001988, sus scrofa domesticus:NCBITAXON_9825, swab:NCIT_C17627, swine:FOODON_03411136

text: Salmonella enterica

text: animal


text: veterinary clinical/research, pig

text: FDA Center for Food Safety and Applied Nutrition

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: ADRDL, SDSU

text: USA:SD

text: pool feces (Sus scrofa domesticus)

text: feces:UBERON_0001988, pool water:GENEPIO_0001014, sus scrofa domesticus:NCBITAXON_9825

text: Salmonella enterica

text: animal


text: veterinary clinical/research, pig

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: ADRDL, SDSU

text: USA:SD

text: pig intestine (Sus scrofa domesticus)

text: Salmonella enterica

text: animal


text: cow

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: ADRDL, SDSU

text: USA:SD

text: bovine lung (Bos taurus)

text: bos taurus:NCBITAXON_9913, bovine:FOODON_03414374, lung:UBERON_0002048

text: Salmonella enterica

text: animal


text: veterinary clinical/research, pig

characteristic: IFSAC+ Category

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: ADRDL, SDSU

text: USA:IA

text: pooled fecal swab (Sus scrofa domesticus)

text: feces:UBERON_0001988, pooled sample:NCIT_C45910, sus scrofa domesticus:NCBITAXON_9825, swab:NCIT_C17627

text: Salmonella enterica

characteristic: organism

text: animal


text: cow

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: ADRDL, SDSU

characteristic: collected by

characteristic: collection date

text: USA:SD

text: bovine liver (Bos taurus)

text: bos taurus:NCBITAXON_9913, bovine:FOODON_03414374, liver:UBERON_0002107

text: Salmonella enterica

text: animal


text: University of Queensland

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.wastewater

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: anaerobic

characteristic: env biome

text: digester

characteristic: env feature

text: sludge

text: TRUE

characteristic: environmental sample

text: Australia: Brisbane

characteristic: geo loc name

characteristic: isolate

text: Cellulose-degrading anaerobic digester

characteristic: isolation-source

text: 27.47 S 153.01999999 E

characteristic: lat lon

text: anaerobic digester metagenome

characteristic: metagenome source

text: TRUE

characteristic: metagenomic

text: This biosample is a metagenomic assembly obtained from the anaerobic digester metagenome BioSample: SAMN05003748.

characteristic: note

text: metagenomic assembly

characteristic: sample type

text: MIMS Environmental/Metagenome sample from Candidatus Methanomethylicus mesodigestus


characteristic: External Id

text: University of Queensland

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.wastewater

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMS:6.0

text: anaerobic

text: digester

text: sludge

text: TRUE

text: Australia: Brisbane

text: Palm oil mill effluent degrading anaerobic digester

text: 27.47 S 153.01999999 E

text: anaerobic digester metagenome

text: TRUE

text: This biosample is a metagenomic assembly obtained from the anaerobic digester metagenome BioSample: SAMN05003749.

text: Candidatus Methanomethylicus mesodigestus

text: metagenomic assembly

characteristic: title


text: University of Queensland

characteristic: INSDC last update

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.wastewater

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: anaerobic

characteristic: env biome

text: pond

characteristic: env feature

text: sludge

text: TRUE

text: Australia: Brisbane

text: Iso-alkane degrading methanogenic enrichment culture from Athabasca tailings sands

text: 27.47 S 153.01999999 E

text: aquatic metagenome

text: TRUE

text: This biosample is a metagenomic assembly obtained from the aquatic metagenome BioSample: SAMN05003750.

text: Candidatus Methanomethylicus oleisabuli

characteristic: organism

text: metagenomic assembly

text: MIMS Environmental/Metagenome sample from Candidatus Methanomethylicus oleisabuli


text: Helmholtz Centre for Infection Research

text: live

text: MIGS.ba

characteristic: depth

text: UTMC 102, DSM 45277

text: seaport

text: sandy soil

text: soil

text: Iran: Sarbandar seaport

characteristic: geo loc name

text: Nocardiopsis sinuspersici

text: UTMC 00102

characteristic: strain

text: Nocardiopsis sinuspersici sample (MIGS Cultured Bacterial/Archaeal)

text: type strain of Nocardiopsis sinuspersici

characteristic: type material


text: No

characteristic: 3d cultured

characteristic: External Id

text: Evseenko Lab, Orthopaedic Surgery, University of Southern California

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Second trimester

characteristic: developmental stage

text: Homo sapiens

text: BMPR1B+ articular chondrocytes

text: Fetal 1

text: no

characteristic: treatment


text: No

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Second trimester

text: Homo sapiens

text: BMPR1B+ articular chondrocytes

text: Fetal 2

characteristic: title

text: no


text: No

characteristic: INSDC last update

text: live

text: Generic

text: Second trimester

text: Homo sapiens

characteristic: organism

text: BMPR1B+ articular chondrocytes

text: Fetal 3

text: no


text: No

text: live

text: Generic

text: Second trimester

text: Homo sapiens

text: BMPR1B+ articular chondrocytes

text: Fetal 4

text: no


text: No

text: live

text: Generic

text: Adult

text: Homo sapiens

text: BMPR1B+ articular chondrocytes

text: Adult 1

text: no


text: No

text: live

text: Generic

text: Adult

text: Homo sapiens

text: BMPR1B+ articular chondrocytes

text: Adult 2

text: no


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: BMPR1B+ articular chondrocytes

text: Adult 3

text: no


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 1 Control

text: no


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 2 Control

text: no


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 3 Control

text: no


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 4 Control

text: no


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 5 Control

text: no


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 6 Control

text: no


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 7 Control

text: no


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 1 Drug

text: yes


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 2 Drug

text: yes


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 3 Drug

text: yes


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 4 Drug

text: yes


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 5 Drug

text: yes


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 6 Drug

text: yes


text: Yes

text: live

text: Generic

text: Adult

text: Homo sapiens

text: Articular chondrocytes

text: Adult 7 Drug

text: yes


text: Cornell University

text: live

text: Plant

text: Skopje P2

characteristic: cultivar

text: United Kingdom

characteristic: geo loc name

text: Skopje P2

characteristic: name

text: Eriolobus florentinus

text: leaf

characteristic: tissue

text: Plant sample from Eriolobus florentinus

characteristic: variety ID


characteristic: External Id

text: FDA Center for Food Safety and Applied Nutrition

text: live

characteristic: Isolate name alias

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:MI

text: Surface wipe

characteristic: isolation source

text: Listeria monocytogenes

characteristic: strain

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: veterinary clinical/research| cow

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FLUFL

characteristic: collected by

text: USA:FL

text: Bos taurus

characteristic: host

text: feces calf

text: feces:uberon_0001988| cattle calf:foodon_03411349

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type

text: Pathogen: environmental/food/other sample from Escherichia coli


text: environmental-water

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FLUFL

text: USA:FL

characteristic: geo loc name

text: water

text: Escherichia coli

characteristic: organism

text: environmental

characteristic: title


characteristic: External Id

text: veterinary clinical/research| cow

text: live

text: Pathogen.env

text: environmental/food/other

text: FLUFL

characteristic: collection date

text: USA:FL

text: Bos taurus

text: feces calf (Bos taurus)

characteristic: isolation source

text: bos taurus:ncbitaxon_9913| feces:uberon_0001988| cattle calf:foodon_03411349

text: Escherichia coli

text: animal

characteristic: strain


text: veterinary clinical/research| cow

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: environmental/food/other

text: FLUFL

text: USA:FL

text: Bos taurus

text: feces (Bos taurus)

text: bos taurus:NCBITAXON_9913| feces:UBERON_0001988

text: Escherichia coli

text: animal


text: veterinary clinical/research| cow

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FLUFL

characteristic: collected by

text: USA:FL

text: Bos taurus

characteristic: host

text: feces calf (Bos taurus)

text: bos taurus:NCBITAXON_9913| feces:UBERON_0001988| hindlimb zeugopod:UBERON_0003823

characteristic: ontological term

text: Escherichia coli

text: animal


text: Kentucky Spinal Cord Injury Research Center, Department of Neurological Surgery, University of Louisville

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Rattus norvegicus

characteristic: passages

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

characteristic: tissue

text: OPC Control, 0μM tunicamycin for 2hr, replicate 1


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission package

text: Rattus norvegicus

characteristic: organism

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

text: OPC Control, 0μM tunicamycin for 2hr, replicate 2

characteristic: title


text: live

text: Generic

text: Rattus norvegicus

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

text: OPC Control, 0μM tunicamycin for 2hr, replicate 3


text: live

text: Generic

text: Rattus norvegicus

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

text: OPC Treatment, 5μM tunicamycin for 2hr, replicate 1


text: live

text: Generic

text: Rattus norvegicus

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

text: OPC Treatment, 5μM tunicamycin for 2hr, replicate 2


text: live

text: Generic

text: Rattus norvegicus

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

text: OPC Treatment, 5μM tunicamycin for 2hr, replicate 3


text: live

text: Generic

text: Rattus norvegicus

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

text: OPC Control, 0μM tunicamycin for 8hr, replicate 1


text: live

text: Generic

text: Rattus norvegicus

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

text: OPC Control, 0μM tunicamycin for 8hr, replicate 2


text: live

text: Generic

text: Rattus norvegicus

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

text: OPC Control, 0μM tunicamycin for 8hr, replicate 3


text: live

text: Generic

text: Rattus norvegicus

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

text: OPC Treatment, 5μM tunicamycin for 8hr, replicate 1


text: live

text: Generic

text: Rattus norvegicus

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

text: OPC Treatment, 5μM tunicamycin for 8hr, replicate 2


text: live

text: Generic

text: Rattus norvegicus

text: oligodendrocyte precursor cells

text: oligodendrocyte precursor cells

text: OPC Treatment, 5μM tunicamycin for 8hr, replicate 3


Clostridium roseum DSM 6424

text: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory

text: live

text: Microbe, viral or environmental

text: Microbial formation of acetone, isopropanol, and butanol is predominantly performed by bacteria of the genus Clostridium. This ability has been industrially exploited during the last 100 years. The solvents are important feedstocks for the chemical and biofuel industry.

characteristic: description

text: Clostridium felsineum

text: whole organism

characteristic: sample type

text: DSM 6424

characteristic: strain

text: Microbe sample from Clostridium felsineum


Clostridium roseum DSM 7320

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Clostridium felsineum

text: whole organism

text: DSM 7320

text: type strain of Clostridium roseum

characteristic: type material


Clostridium aurantibutyricum DSM 793

text: live

text: Microbe, viral or environmental

text: Clostridium felsineum

text: whole organism

text: DSM 793

text: type strain of Clostridium aurantibutyricum


text: Northwestern University Feinberg School of Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Stat1a p91 sc-345

characteristic: antibody

text: Santa Cruz

characteristic: antibody vendor

text: MCF-7 from NCI-60

characteristic: cell line

text: Homo sapiens

text: breast tumor

text: APOI


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: IgG control

text: MCF-7 from NCI-60

text: Homo sapiens

text: breast tumor

text: IGG


characteristic: External Id

text: turkey

characteristic: IFSAC Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: Minnesota Department of Health

characteristic: collected by

characteristic: collection date

text: USA:MN

characteristic: geo loc name

text: turkey breast

characteristic: isolation source

text: turkey breast:FOODON_00002690

characteristic: ontological term

text: Listeria monocytogenes

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: FSU Jena

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

text: 100 ml of SUP medium were inoculated with 5x105 Lichtheimia spores and incubated for 16 h (NaCl, heat stress) or 20 h (GdA and DTT treatment). Then stress factors were added: Gda 5.5 microM from a 10 mg/ml stock in DMSO, DTT 5 mM and incubated for 2h. Heat (42 degree) stress was applied for 6h.

characteristic: description

text: Germany: Lab, FSU Jena

text: Lichtheimia ramosa

characteristic: organism

text: Spores of culture

characteristic: sample type

characteristic: strain

text: Lichtheimia ramosa JMRC:FSU:6197 GDA DTT HEAT samples

characteristic: title


characteristic: External Id

text: Plateforme of transcriptome and epigenome, Citech, Institut Pasteur

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: dormant conidia T0

characteristic: age

characteristic: genotype

text: Aspergillus fumigatus

text: Malt agar medium

text: WT rep1 T0


text: live

text: Generic

characteristic: NCBI submission package

text: dormant conidia T0

text: Aspergillus fumigatus

text: Malt agar medium

text: WT rep2 T0


text: live

text: Generic

text: dormant conidia T0

text: Aspergillus fumigatus

text: Malt agar medium

text: WT rep3 T0


text: live

text: Generic

text: Swollen conidia T4h

text: Aspergillus fumigatus

text: Glucose (3%) + Yeast Extract (1%) medium

text: WT rep1 T4h


text: live

text: Generic

text: Swollen conidia T4h

text: Aspergillus fumigatus

text: WT rep2 T4h


text: live

text: Generic

text: Swollen conidia T4h

text: Aspergillus fumigatus

text: WT rep3 T4h


text: live

text: Generic

text: Germinated conidia T8h

text: Aspergillus fumigatus

text: WT rep1 T8h


text: live

text: Generic

text: Germinated conidia T8h

text: Aspergillus fumigatus

text: WT rep2 T8h


text: live

text: Generic

text: Germinated conidia T8h

text: Aspergillus fumigatus

text: WT rep3 T8h


D.hansenii J6

text: University of Puerto Rico at Mayaguez

text: live

text: MIGS.eu

characteristic: depth

text: Ascomycete yeast Debaryomyces hansenii J6 genome sequencing and assembly.

text: estuary

characteristic: env biome

text: estuary

characteristic: env feature

text: water

characteristic: estimated size

text: Sweden

characteristic: geo loc name

text: YPD

text: 57.687443 N 11.83652000 E

characteristic: lat lon

text: Debaryomyces hansenii

text: Haploid

characteristic: ploidy

text: eukaryote:asexual

characteristic: propagation

text: Debaryomyces hansenii J6


tag: Namespace:DOE Joint Genome Institute

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: Kosakonia arachidis

characteristic: organism

characteristic: strain

text: Kosakonia arachidis Ah-143

characteristic: title

text: type strain of Enterobacter arachidis

characteristic: type-material


name: Oceanic oxygen minimum zone microbial communities that regulate carbon cycling - Sample ETNP201406SV69

characteristic: External Id

text: Environmental | Aquatic | Marine | Oceanic | Unclassified

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Pacific Ocean: Eastern Tropical North Pacific Ocean

text: marine metagenome


name: Oceanic oxygen minimum zone microbial communities that regulate carbon cycling - Sample ETNP201406SV203

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: marine metagenome


text: clinical/research, human

characteristic: IFSAC+ Category

text: Brigham & Women's Hospital

text: live

text: USA

text: Pathogen.cl

text: Xiaomin Zhao

characteristic: collected by

characteristic: collection date

text: Escherichia

characteristic: genus

text: USA:Boston

text: Homo sapiens

characteristic: host

characteristic: host age

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: blood

characteristic: isolation source

text: blood

characteristic: ontological term

text: Escherichia coli

text: human

characteristic: source type

text: Pathogen: clinical or host-associated sample from Escherichia coli

type: AMR curated data - CABBAGE

value: cefoxitin

value: CLSI

value: broth dilution

value: mg/L

value: Vitek

value: resistant

value: Escherichia coli

value: ceftazidime

value: ceftriaxone

value: meropenem

value: amoxicillin-clavulanic acid

value: trimethoprim-sulfamethoxazole

value: susceptible

value: tetracycline

value: piperacillin-tazobactam

value: tobramycin


characteristic: External Id

text: clinical/research, human

text: Brigham & Women's Hospital

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: USA

text: Pathogen.cl

text: Xiaomin Zhao

text: Escherichia

text: USA:Boston

text: Homo sapiens

text: male

text: urine

text: urinary tract

text: Escherichia coli

characteristic: organism

text: human

characteristic: strain

characteristic: title

value: levofloxacin

value: gentamicin

value: cefepime


text: environmental-water

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: Emory University, FDA CFSAN

characteristic: collected by

characteristic: collection date

text: USA:GA

characteristic: geo loc name

text: pond

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: environmental

text: Pathogen: environmental/food/other sample from Salmonella enterica


characteristic: External Id

text: environmental

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: Emory University/FDA CFSAN

text: USA:GA

text: environment

characteristic: isolation source

text: environmental system:envo_01000254

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: source type


text: clinical/research, human

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: PAK

text: Pathogen.cl

text: clinical/host-associated

text: Aga Khan University

text: Klebsiella

characteristic: genus

text: Pakistan

text: Homo sapiens

characteristic: host

text: blood

text: blood

text: Klebsiella pneumoniae

characteristic: organism

text: GenomeTrakr

text: human

text: Pathogen: clinical or host-associated sample from Klebsiella pneumoniae

value: CLSI

value: Klebsiella pneumoniae

value: ciprofloxacin

value: polymyxin B

value: tigecycline

value: colistin

value: imipenem

value: minocycline

value: aztreonam


text: clinical/research, human

characteristic: IFSAC+ Category

text: live

text: PAK

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: clinical/host-associated

text: Aga Khan University

characteristic: collected by

text: Klebsiella

text: Pakistan

text: Homo sapiens

text: urine

text: urinary tract

text: Klebsiella pneumoniae

text: GenomeTrakr

text: human

characteristic: strain

characteristic: title

value: mg/L

value: resistant

value: amoxicillin-clavulanic acid

value: ampicillin-sulbactam

value: ceftazidime-clavulanic acid

value: ampicillin

value: cefoxitin

value: intermediate

value: trimethoprim-sulfamethoxazole

value: cefotaxime


characteristic: External Id

text: clinical/research, human

characteristic: INSDC center name

text: live

text: PAK

text: Pathogen.cl

text: clinical/host-associated

text: Aga Khan University

characteristic: collection date

text: Klebsiella

text: Pakistan

characteristic: geo loc name

text: Homo sapiens

text: body fluid

characteristic: isolation source

text: bodily fluid:UBERON_0006314

text: Klebsiella pneumoniae

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: human

value: cefazolin

value: CLSI

value: Klebsiella pneumoniae

value: cefotaxime-clavulanic acid

value: ceftriaxone

value: doripenem

value: piperacillin-tazobactam

value: susceptible

value: tobramycin

value: ceftazidime


text: clinical/research, human

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

text: clinical/host-associated

text: Aga Khan University

text: Pakistan

text: Homo sapiens

text: blood

characteristic: ontological term

text: Citrobacter sp. CFSAN044567

text: GenomeTrakr

text: human

characteristic: source type

text: Pathogen: clinical or host-associated sample from Citrobacter sp. CFSAN044567


text: clinical/research, human

characteristic: IFSAC+ Category

text: live

text: PAK

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: clinical/host-associated

text: Aga Khan University

text: Klebsiella

characteristic: genus

text: Pakistan

text: Homo sapiens

characteristic: host

text: blood

text: blood

text: Klebsiella pneumoniae

characteristic: organism

text: GenomeTrakr

text: human

value: minocycline

value: mg/L

value: ampicillin-sulbactam

value: resistant

value: gentamicin

value: imipenem

value: aztreonam

value: cefepime

value: colistin

value: amikacin

value: amoxicillin-clavulanic acid


characteristic: External Id

text: clinical/research, human

characteristic: INSDC center name

text: live

text: PAK

text: Pathogen.cl

text: clinical/host-associated

text: Aga Khan University

characteristic: collected by

characteristic: collection date

text: Klebsiella

text: Pakistan

characteristic: geo loc name

text: Homo sapiens

text: body fluid

text: bodily fluid:UBERON_0006314

text: Klebsiella pneumoniae

text: GenomeTrakr

text: human

characteristic: strain

characteristic: title

value: levofloxacin

value: CLSI

value: Klebsiella pneumoniae

value: ampicillin

value: trimethoprim-sulfamethoxazole

value: cefotaxime

value: chloramphenicol

value: cefotaxime-clavulanic acid

value: meropenem

value: tetracycline

value: ceftazidime-clavulanic acid

value: ceftriaxone


text: clinical/research, human

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: PAK

text: Pathogen.cl

text: clinical/host-associated

text: Aga Khan University

text: Klebsiella

text: Pakistan

text: Homo sapiens

text: blood

characteristic: isolation source

text: blood

text: Klebsiella pneumoniae

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: human

value: ertapenem

value: mg/L

value: resistant

value: tigecycline

value: susceptible

value: piperacillin-tazobactam

value: imipenem

value: doripenem

value: cefoxitin

value: polymyxin B

value: minocycline


text: clinical/research, human

characteristic: IFSAC+ Category

text: live

text: PAK

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: clinical/host-associated

text: Aga Khan University

text: Klebsiella

characteristic: genus

text: Pakistan

text: Homo sapiens

text: body fluid

text: bodily fluid:UBERON_0006314

characteristic: ontological term

text: Klebsiella pneumoniae

text: GenomeTrakr

text: human

characteristic: source type

value: CLSI

value: Klebsiella pneumoniae

value: ceftazidime

value: tobramycin

value: intermediate

value: amikacin

value: chloramphenicol

value: aztreonam

value: cefepime


characteristic: External Id

text: clinical/research, human

characteristic: INSDC center name

text: live

text: PAK

text: Pathogen.cl

text: clinical/host-associated

text: Aga Khan University

characteristic: collected by

characteristic: collection date

text: Klebsiella

text: Pakistan

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: blood

text: blood

text: Klebsiella pneumoniae

characteristic: organism

text: GenomeTrakr

text: human

value: cefazolin

value: mg/L

value: resistant

value: tetracycline

value: ertapenem

value: cefotaxime-clavulanic acid

value: ciprofloxacin

value: ampicillin-sulbactam

value: trimethoprim-sulfamethoxazole


text: clinical/research, human

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: PAK

text: Pathogen.cl

text: clinical/host-associated

text: Aga Khan University

text: Klebsiella

text: Pakistan

text: Homo sapiens

text: body fluid

characteristic: isolation source

text: bodily fluid:UBERON_0006314

text: Klebsiella pneumoniae

text: GenomeTrakr

text: human

characteristic: strain

characteristic: title

value: CLSI

value: Klebsiella pneumoniae

value: doripenem

value: susceptible

value: levofloxacin

value: ceftriaxone

value: meropenem

value: cefotaxime

value: minocycline

value: imipenem


text: clinical/research

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: Aga Khan University

characteristic: culture collection

text: Netherlands

text: laboratory strain

text: laboratory:NCIT_C37984, organism strain:NCIT_C14419

text: Klebsiella pneumoniae

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: ATCC ATCC 43816

text: Pathogen: environmental/food/other sample from Klebsiella pneumoniae


characteristic: External Id

text: Environmental | Aquatic | Marine | Oceanic | Aphotic zone

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: 48.97 N 130.666667 W

characteristic: lat lon

text: marine metagenome

text: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P12 2000m


text: DOE Joint Genome Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: 49.566667 N 138.666667 W

text: marine metagenome

characteristic: organism

text: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P20 2000m


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: 49.566667 N 138.666667 W

text: marine metagenome

text: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P20 500m


text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: USA:CA

characteristic: geo loc name

text: Environmental Samples

characteristic: isolation source

text: Salmonella enterica

text: GenomeTrakr

text: United States Food and Drug Administration|Office of Regulatory Affairs|Arkansas Laboratory

characteristic: strain

characteristic: title


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: Stutzerimonas stutzeri

text: Pseudomonas stutzeri NP_8HO


characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: MIGS.ba

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIGS:6.0

text: Stutzerimonas kunmingensis

text: DSM 25974

text: Pseudomonas kunmingensis DSM 25974

text: type strain of Pseudomonas kunmingensis

characteristic: type material


text: DOE Joint Genome Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Actinacidiphila yanglinensis

characteristic: organism

text: CGMCC 4.2023

text: Streptomyces yanglinensis CGMCC 4.2023

text: type strain of Streptomyces yanglinensis


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Actinacidiphila alni

text: CGMCC 4.3510

text: Streptomyces alni CGMCC 4.3510

text: type strain of Streptomyces alni


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Actinacidiphila glaucinigra

text: CGMCC 4.1858

text: Streptomyces glauciniger CGMCC 4.1858

text: type strain of Streptomyces glauciniger


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Actinacidiphila guanduensis

text: CGMCC 4.2022

text: Streptomyces guanduensis CGMCC 4.2022

text: type strain of Streptomyces guanduensis


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Actinacidiphila rubida

text: CGMCC 4.2026

text: Streptomyces rubidus CGMCC 4.2026

text: type strain of Streptomyces rubidus


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Cryobacterium levicorallinum

text: GMCC 1.11211

text: Cryobacterium levicorallinum CGMCC 1.11211

text: type strain of Cryobacterium levicorallinum

characteristic: type-material


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Actinacidiphila paucisporea

text: CGMCC 4.2025

text: Streptomyces paucisporeus CGMCC 4.2025

text: type strain of Streptomyces paucisporeus


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Citrobacter amalonaticus

text: Citrobacter sp. NLAE-zl-C269


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Stutzerimonas xanthomarina

text: LMG 23572

text: Pseudomonas xanthomarina LMG 23572


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Pseudoduganella namucuonensis

text: CGMCC 1.11014

text: Massilia namucuonensis CGMCC 1.11014

text: type strain of Massilia namucuonensis


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Litchfieldia salsa

text: Bacillus salsus IBRC-M10078


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Stutzerimonas stutzeri

text: Pseudomonas stutzeri NP_8Ht


text: University of Toronto Mississauga

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Canada: Mississauga, urban forest by UTM campus

characteristic: geo loc name

text: Quercus rubra

characteristic: host

characteristic: isolate

text: Tree bark and soil

text: Torulaspora delbrueckii

text: cell culture

characteristic: sample type

text: Microbe sample from Torulaspora delbrueckii


text: University of Toronto Mississauga

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Quercus rubra

text: Tree bark and soil

characteristic: isolation source

text: Torulaspora delbrueckii

text: cell culture

characteristic: title


5`-ERS RNA-seq Mycoplasma gallisepticum

characteristic: External Id

text: Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: Russia: Moscow

text: cell culture

text: Mycoplasmoides gallisepticum S6

text: cell culture

characteristic: strain

text: 5`-ERS RNA-seq Mycoplasma gallisepticum


text: Environmental | Aquatic | Marine | Unclassified | Unclassified

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: Saanich Inlet

text: 48.6000 N 123.5000 W

characteristic: lat lon

text: marine metagenome

characteristic: organism

text: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_200m_RNA


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: collection date

text: Saanich Inlet

text: 48.6000 N 123.5000 W

text: marine metagenome

text: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_10m_RNA