text: multi-ingredient| pork

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:CT

text: LM MBS-4756

text: ready to eat deli meat cooked ham

text: luncheon meat:foodon_03310675| meat (cooked):foodon_03305103| ham (cooked):foodon_03312046| food (ready-to-serve):foodon_03316636

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


status: PUBLIC

characteristic: External Id

text: multi-ingredient| pork

tag: attribute

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:CT

characteristic: geo loc name

text: LM MBS-4757

text: ready to eat deli meat cooked ham

characteristic: isolation source

text: fully heat-treated:FOODON_03440014|luncheon meat:FOODON_03310675|ham (cooked):FOODON_03312046

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

characteristic: strain

text: Pathogen: environmental/food/other sample from Listeria monocytogenes

characteristic: title


text: multi-ingredient| pork

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:GA

text: LM MBS-5081

text: ready to eat deli meat ham

text: food (ready-to-serve):FOODON_03316636|luncheon meat:FOODON_03310675|ham food product:FOODON_00002502

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


characteristic: External Id

text: multi-ingredient| pork

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

text: LM MBS-5082

text: ready to eat deli meat ham

text: Listeria monocytogenes

text: GenomeTrakr

text: food


text: poultry

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:GA

characteristic: geo loc name

text: LM MBS-5091

text: ready to eat deli meat chicken

characteristic: isolation source

text: luncheon meat:foodon_03310675| chicken meat food product:foodon_00001040| food (ready-to-serve):foodon_03316636

text: Listeria monocytogenes

text: GenomeTrakr

text: food


text: multi-ingredient| poultry

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

text: LM MBS-5092

text: ready to eat deli meat chicken

text: food ready-to-serve:FOODON_03316636|luncheon meat:FOODON_03310675|chicken meat food product:FOODON_00001040

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

characteristic: strain


text: poultry

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:CT

text: LM MBS-5216

text: ready to eat deli meat turkey mesquite

text: luncheon meat:foodon_03310675| turkey meat food product:foodon_00001286| food (ready-to-serve):foodon_03316636

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: title


characteristic: External Id

text: multi-ingredient| turkey

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:CT

text: LM MBS-5217

text: ready to eat deli meat turkey mesquite

text: food (ready-to-serve):FOODON_03316636|luncheon meat:FOODON_03310675|turkey meat food product:FOODON_00001286

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


text: pork

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:MD

characteristic: geo loc name

text: LM MBS-5237

text: ready to eat deli meat ham tavern

text: luncheon meat:foodon_03310675| ham food product:foodon_00002502| food (ready-to-serve):foodon_03316636

text: Listeria monocytogenes

text: GenomeTrakr

text: food


text: multi-ingredient| pork

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:MD

text: LM MBS-5238

text: ready to eat deli meat ham tavern

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food


text: multi-ingredient| poultry| other (sweetener)

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:MD

text: LM MBS-5317

text: ready to eat deli meat honey barbecue chicken

text: luncheon meat:foodon_03310675| chicken meat food product:foodon_00001040| honey:uberon_0036016| food (ready-to-serve):foodon_03316636

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: strain


characteristic: External Id

text: multi-ingredient| chicken| other (sweetener)

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:MD

text: LM MBS-5318

text: ready to eat deli meat honey barbeque chicken

text: food ready-to-serve:FOODON_03316636| luncheon meat:FOODON_03310675| chicken meat food product:FOODON_00001040| honey:UBERON_0036016| food barbequed:FOODON_03301942

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: title


text: pork

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:GA

text: LM MBS-5481

text: ready to eat deli meat ham

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


text: multi-ingredient| pork

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

characteristic: geo loc name

text: LM MBS-5482

text: ready to eat deli meat ham

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: food


text: multi-ingredient| poultry

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:GA

text: LM MBS-5491

text: ready to eat deli meat chicken

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: sequenced by

text: food


characteristic: External Id

text: poultry

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

text: LM MBS-5492

text: ready to eat deli meat chicken

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: strain


text: multi-ingredient| beef| pork

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:GA

text: LM MBS-5731

text: ready to eat sausage labanon bologna

text: food ready-to-serve:FOODON_03316636| sausage formed:FOODON_03315904| bologna:FOODON_03306503

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: title


text: multi-ingredient| beef| pork

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

characteristic: geo loc name

text: LM MBS-5732

text: ready to eat dried fermented sausage labanon bologna

characteristic: isolation source

text: food (ready-to-serve):FOODON_03316636| food ready-to-serve:FOODON_03316636| sausage dried| fermented:FOODON_00001223| bologna:FOODON_03306503

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food

characteristic: source type


text: multi-ingredient| poultry

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:GA

text: LM MBS-6021

text: ready to eat deli salad containing meat chicken

text: food ready-to-serve:FOODON_03316636|luncheon meat:FOODON_03310675|meat salad:FOODON_03316331|chicken salad:FOODON_03306092

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: food


characteristic: External Id

text: multi-ingredient| poultry

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

text: LM MBS-6022

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: sequenced by

text: food

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: multi-ingredient| other (sweetener)| turkey

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:GA

text: LM MBS-6031

text: ready to eat deli meat honey smoked turkey

text: food (ready-to-serve):FOODON_03316636| luncheon meat:FOODON_03310675| smoked meat:FOODON_03309581| turkey meat food product:FOODON_00001286| honey:UBERON_0036016

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: strain


text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

characteristic: geo loc name

text: LM MBS-6032

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food

characteristic: title


text: multi-ingredient| turkey

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:GA

text: LM MBS-6041

text: ready to eat deli meat turkey smoked

text: food (ready-to-serve):FOODON_03316636|luncheon meat:FOODON_03310675|turkey meat food product:FOODON_00001286|smoked meat:FOODON_03309581

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


characteristic: External Id

text: multi-ingredient| turkey

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

text: LM MBS-6042

text: ready to eat deli meat turkey smoked

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: food


text: multi-ingredient| turkey

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:GA

text: LM MBS-6051

text: ready to eat deli meat oven roasted turkey

text: food (ready-to-serve):FOODON_03316636|luncheon meat:FOODON_03310675|turkey meat food product:FOODON_00001286|food (roasted):FOODON_00002744

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: sequenced by

text: food


text: multi-ingredient| turkey

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

characteristic: geo loc name

text: LM MBS-6052

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food

characteristic: strain


text: poultry

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:GA

text: LM MBS-6061

text: ready to eat deli meat low sodium turkey

text: meat product (low sodium):foodon_03317602| luncheon meat:foodon_03310675| turkey meat food product:foodon_00001286| food (ready-to-serve):foodon_03316636

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: title


characteristic: External Id

text: multi-ingredient| turkey

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

text: LM MBS-6062

text: food (ready-to-serve):FOODON_03316636|meat product (low sodium):FOODON_03317602|luncheon meat:FOODON_03310675|turkey meat food product:FOODON_00001286

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


text: multi-ingredient| poultry

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:GA

text: LM MBS-6071

text: ready to eat deli meat oven roasted chicken

text: food ready-to-serve:FOODON_03316636|luncheon meat:FOODON_03310675|chicken meat food product:FOODON_00001040|food roasted:FOODON_00002744

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: food


text: multi-ingredient| poultry

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

characteristic: geo loc name

text: LM MBS-6072

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: sequenced by

text: food


text: multi-ingredient| beef

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:GA

text: LM MBS-6081

text: ready to eat deli meat corned beef

text: beef food product:FOODON_00001041|food (ready-to-serve):FOODON_03316636|luncheon meat:FOODON_03310675|meat (corned):FOODON_03315417

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: strain


characteristic: External Id

text: multi-ingredient| beef

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

text: LM MBS-6082

text: ready to eat deli meat corned beef

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: title


text: dairy| other (confectionery)

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: Washington State Department of Health | Public Health Laboratories

characteristic: collected by

text: USA:WA

text: ice cream

text: ice cream food product:FOODON_00001045

text: Listeria monocytogenes

text: food

characteristic: source type


text: environmental-factory/production facility

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: USA:WA

characteristic: geo loc name

text: environmental swab sponge

characteristic: isolation source

text: environmental (swab or sampling):GENEPIO_0001732| environmental sponge:CURATION_0000359

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: environmental


characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USA:WA

text: environmental swab sponge facility

text: environmental (swab or sampling):genepio_0001732| facility:ncit_c62574

text: Listeria monocytogenes

text: environmental

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


characteristic: External Id

text: pome fruit

text: FDA/CFSAN/MDH

text: live

text: Pathogen.env

text: environmental/food/other

text: Minnesota Department of Health

characteristic: collection date

text: USA:MN

text: apple

text: apple (whole):FOODON_00002473

text: Listeria monocytogenes

text: food

characteristic: strain


text: pome fruit

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: fda lab id

text: USA:NE

text: granny smith apple

text: granny smith apple:FOODON_00002853

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

text: food


text: pome fruit

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA

characteristic: collected by

text: USA:NE

text: granny smith apple

text: granny smith apple:foodon_00002853

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type

characteristic: title


text: Health Canada

characteristic: INSDC center name

text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: National Microbiology Laboratory

text: For effective Vibrio spp. surveillance, including the eventual identification of the source contaminated seafood, strain delineation is important. Serotype is an important characteristic in strain delineation since there is strong association between certain serotypes and pandemic illness. Several of these isolates were identified as O:4 but showed weak agglutination with the polyvalent antiserum K group II and failed to agglutinate with any of the seven associated monovalent antiserum.

characteristic: description

text: Canada: Alberta

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: Vibrio gastroenteritis

characteristic: host disease

text: clinical sample

characteristic: isolation source

text: Vibrio parahaemolyticus

characteristic: organism

characteristic: serotype

text: Pathogen: clinical or host-associated sample from Vibrio parahaemolyticus


characteristic: External Id

text: Health Canada

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: National Microbiology Laboratory

characteristic: collection date

text: Canada: British Columbia

text: Homo sapiens

text: Vibrio gastroenteritis

text: clinical sample

text: Vibrio parahaemolyticus

characteristic: strain


text: Academia Sinica

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: SRA accession

text: Sweden: Lund

text: intestinal canal of Drosophila pinicola

text: Lachancea kluyveri

text: Cell culture

characteristic: sample type

text: CBS 3082

text: L. kluyveri-ancestor strain subjected to bacterial competition to get evolved strain

text: type material of Saccharomyces kluyveri

characteristic: type material


text: mollusks (bi-valve)

characteristic: IFSAC Category

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

characteristic: collected by

text: USA:TX

characteristic: geo loc name

text: CFSAN011095; FDA_R2

text: oyster

characteristic: ontological term

text: Vibrio parahaemolyticus

characteristic: serovar

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Vibrio parahaemolyticus

characteristic: title

text: tdh+/trh-

characteristic: toxin


characteristic: External Id

text: mollusks (bi-valve)

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

characteristic: collection date

text: USA:ME

text: CFSAN011124; FDA_R61

text: oyster

characteristic: isolation source

text: Vibrio parahaemolyticus

characteristic: organism

text: food

text: tdh-/trh+


text: mollusks (bi-valve)

characteristic: IFSAC Category

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA

text: USA:ME

text: CFSAN011127; FDA_R64

text: oyster

text: Vibrio parahaemolyticus

text: food

characteristic: strain

text: tdh-/trh+


text: mollusks (bi-valve)

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

characteristic: collected by

text: Canada:PEI

text: CFSAN011136; FDA_R94

text: oyster

text: Vibrio parahaemolyticus

text: food

text: tdh+/trh+


text: mollusks (bi-valve)

text: live

text: Pathogen.env

text: FDA

text: Canada:PEI

characteristic: geo loc name

text: CFSAN011139; FDA_R97

text: oyster

characteristic: ontological term

text: Vibrio parahaemolyticus

text: food

text: tdh+/trh+


text: mollusks (bi-valve)

text: live

text: Pathogen.env

text: FDA

text: Canada:PEI

text: CFSAN011142; FDA_R100

text: oyster

text: Vibrio parahaemolyticus

text: food

characteristic: source type

characteristic: title

text: tdh+/trh+


characteristic: External Id

text: clinical/research, human

characteristic: IFSAC+ Category

text: live

text: Pathogen.cl

text: FDA

text: USA:VA

text: Homo sapiens

characteristic: host

text: blood

text: Vibrio parahaemolyticus

text: human

text: tdh-/trh-

characteristic: toxin


text: clinical/research, human

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: FDA

characteristic: collection date

text: USA:MA

text: Homo sapiens

text: stool

text: Vibrio parahaemolyticus

text: human

text: tdh+/trh+


text: clinical/research, human

text: live

characteristic: INSDC status

text: Pathogen.cl

text: FDA

text: USA:WA

text: Homo sapiens

text: stool

characteristic: isolation source

text: Vibrio parahaemolyticus

characteristic: organism

characteristic: serovar

text: human

text: tdh+/trh+


text: clinical/research, human

characteristic: INSDC center name

text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: FDA

characteristic: collected by

text: USA:NY

text: Homo sapiens

text: stool

text: Vibrio parahaemolyticus

text: human

characteristic: strain

text: tdh+/trh+


text: clinical/research, human

text: live

text: Pathogen.cl

text: FDA

text: USA:NY

characteristic: geo loc name

text: Homo sapiens

text: stool

characteristic: ontological term

text: Vibrio parahaemolyticus

text: human

characteristic: source type

characteristic: title

text: tdh-/trh+


characteristic: External Id

text: clinical/research, human

characteristic: IFSAC+ Category

text: live

text: Pathogen.cl

text: FDA

text: USA

text: Homo sapiens

characteristic: host

text: Vibrio parahaemolyticus

text: human

text: tdh-/trh-

characteristic: toxin


Methanoculleus sp. S3Fa

text: National Chung Hsing University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Prof. Mei-Chin Lai

characteristic: biomaterial provider

text: ORI-934 cruise

characteristic: collection date

characteristic: culture collection

text: 464 m below sea surface

characteristic: depth

text: Taiwan: SW, 96 Mud Volcano Group, Offshore

text: Mei-Fei Chen

characteristic: identified by

text: deep-sea sediment

text: 22.14383 N 120.32483 E

characteristic: lat lon

text: Methanoculleus sediminis

text: cell culture

characteristic: sample type

text: Microbe sample from Methanoculleus sediminis

text: type strain of Methanoculleus sediminis

characteristic: type material


characteristic: External Id

text: Academia Sinica

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: A single colony from L. kluyveri (CBS 3082) was evolved by a long-term modified serial dilution transfer method (batch cultures) method in which bacteria were sequentially introduced to compete with yeasts under aerobic conditions. Both evolved and the ancestral strains were grown in duplicates in batch cultivation with synthetic minimal media. Batch cultures of evolved and ancestor were sampled for RNA extraction under both aerobic, post-diauxic and anaerobic conditions in fermeters to determine changes in expression of genes responsible for carbon utilization in the evolved strain. RNA was extracted from these samples. The cDNA libraries were constructed. Paired-end sequencing was performed on Illumina HiSeq2000.

characteristic: description

text: Sweden: Lund

characteristic: geo loc name

text: intestinal canal of Drosophila pinicola

text: Lachancea kluyveri

characteristic: organism

text: Cell culture

text: CBS 3082

characteristic: strain

text: Lachancea kluyveri transcriptome of ancestor and evolved strain in aerobic, post-diauxic and anerobic conditions

characteristic: title

text: type material of Saccharomyces kluyveri


text: dairy

characteristic: IFSAC Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA Contracted Laboratory

text: USA:WA

text: milk

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

text: food

characteristic: source type


text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:OH

text: chicken

text: Salmonella enterica

text: food

text: Pathogen: environmental/food/other sample from Salmonella enterica


characteristic: External Id

text: chicken

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:CO

text: chicken

text: Salmonella enterica

text: food


text: chicken

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:LA

characteristic: geo loc name

text: chicken

text: Salmonella enterica

characteristic: organism

text: food

characteristic: strain


text: chicken

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:IA

text: chicken

text: Salmonella enterica

text: food

characteristic: title


text: chicken

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:CA

text: chicken

text: Salmonella enterica

text: food


text: chicken

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:MN

text: chicken

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica

text: food


text: turkey

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:MN

text: turkey

text: domestic turkey:FOODON_03414166

text: Salmonella enterica

text: food

characteristic: source type


text: chicken

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:AR

text: chicken

text: Salmonella enterica

text: food


characteristic: External Id

text: chicken

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:NE

text: chicken

text: Salmonella enterica

text: food


text: seeded vegetables (solanaceous)

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:CA

text: ground red pepper

text: pepper (ground):FOODON_03301526|hot pepper food product:FOODON_00001956

text: Salmonella enterica

text: food


text: chicken

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:TX

characteristic: geo loc name

text: chicken

text: Salmonella enterica

text: food


text: chicken

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:CA

text: chicken

text: Salmonella enterica

characteristic: organism

text: food

characteristic: strain


text: chicken

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:MS

text: chicken

text: Salmonella enterica

text: food

characteristic: title


text: chicken

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA Contracted Laboratory

text: USA:MS

text: chicken

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica

text: food


text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:ID

text: chicken

text: Salmonella enterica

text: food

characteristic: source type


characteristic: External Id

text: chicken

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:MA

text: chicken

text: Salmonella enterica

text: food


text: turkey

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:CA

text: turkey

text: domestic turkey:FOODON_03414166

text: Salmonella enterica

text: food


text: chicken

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:CA

characteristic: geo loc name

text: chicken

text: Salmonella enterica

characteristic: organism

text: food


text: chicken

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:TN

text: chicken

text: Salmonella enterica

text: food

characteristic: strain


text: chicken

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:MA

text: chicken

text: Salmonella enterica

text: food

characteristic: title


text: chicken

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:AZ

text: chicken

characteristic: isolation source

text: Salmonella enterica

text: food


text: chicken

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:CA

text: chicken

characteristic: ontological term

text: Salmonella enterica

text: food


text: chicken

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:KY

text: chicken

text: Salmonella enterica

text: food

characteristic: source type


characteristic: External Id

text: chicken

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:MN

text: chicken

text: Salmonella enterica

text: food


text: chicken

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:CO

text: chicken

text: Salmonella enterica

text: food


text: chicken

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:NE

text: chicken

text: Salmonella enterica

text: food


text: chicken

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:IA

characteristic: geo loc name

text: chicken

text: Salmonella enterica

characteristic: organism

text: food


text: chicken

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:TX

text: chicken

text: Salmonella enterica

text: food

characteristic: strain


text: chicken

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:IL

text: chicken

text: Salmonella enterica

text: food

characteristic: title


text: turkey

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:OH

text: turkey

characteristic: isolation source

text: domestic turkey:FOODON_03414166

text: Salmonella enterica

text: food


text: chicken

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:OH

text: chicken

characteristic: ontological term

text: Salmonella enterica

text: food


text: turkey

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: FDA Contracted Laboratory

text: USA:OH

text: turkey

text: domestic turkey:FOODON_03414166

text: Salmonella enterica

text: food

characteristic: source type


characteristic: External Id

text: live

text: Pathogen.cl

text: Graphocephala atropunctata

characteristic: host

text: Candidatus Karelsulcia muelleri

text: BGSS

text: Pathogen: clinical or host-associated sample from Candidatus Karelsulcia muelleri


DMB SH20028

text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: AMC- Walter Reed Army Medical Center

characteristic: collected by

characteristic: collection date

text: USA:MD

text: Homo sapiens

text: Shigella dysenteriae 3818 TR1

characteristic: isolate name alias

text: Shigella dysenteriae

characteristic: serotype

characteristic: serovar

text: human

text: DMB SH20028

text: Pathogen: clinical or host-associated sample from Shigella dysenteriae


DMB SH20030

text: clinical/research| human

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: AMC- Walter Reed Army Medical Center

text: USA:MD

characteristic: geo loc name

text: Shigella 3

characteristic: group

text: Homo sapiens

text: Shigella flexneri M 90 TW #30

text: Shigella flexneri

characteristic: organism

text: human

text: DMB SH20030

characteristic: strain

text: Pathogen: clinical or host-associated sample from Shigella flexneri

characteristic: title


DMB SH135

characteristic: External Id

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: FDA

characteristic: culture collection

text: USA:VA

text: Shigella 1

text: Homo sapiens

characteristic: host

text: Shigella boydii CDC 6336-52

characteristic: ontological term

text: Shigella boydii

text: human

characteristic: source type

text: ATCC 12030

text: Pathogen: clinical or host-associated sample from Shigella boydii


DMB SH20174

text: clinical/research| human

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: clinical/host-associated

text: FDA

characteristic: collected by

characteristic: collection date

text: USA:CA

text: Homo sapiens

text: Shigella dysenteriae CDC 3044-74

characteristic: isolate name alias

text: feces

characteristic: isolation source

text: Shigella dysenteriae

characteristic: serotype

characteristic: serovar

text: human

text: ATCC 29026


DMB SH137

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: clinical/host-associated

text: FDA

text: Shigella 2

characteristic: group

text: Homo sapiens

text: Shigella boydii CDC 2710-54

text: feces

text: Shigella boydii

characteristic: organism

text: human

text: ATCC 35964

characteristic: strain

characteristic: title


DMB SH130

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: FDA

characteristic: culture collection

text: USA:VA

characteristic: geo loc name

text: Shigella 1

text: Homo sapiens

characteristic: host

text: Shigella boydii NCTC 12985

characteristic: ontological term

text: Shigella boydii

text: human

characteristic: source type

text: ATCC 8700

text: type strain of Shigella boydii

characteristic: type material


DMB SH20008

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: FDA

characteristic: collected by

characteristic: collection date

text: USA:VA

text: Shigella 1

text: Homo sapiens

text: Shigella boydii AMC 43-G-58

characteristic: isolate name alias

text: Shigella boydii

characteristic: serotype

characteristic: serovar

text: human

text: ATCC 9207


DMB SH134

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: FDA

text: USA:VA

text: Shigella 2

characteristic: group

text: Homo sapiens

text: Shigella boydii AMC 4006

text: Shigella boydii ATCC 9905

characteristic: organism

text: human

text: ATCC 9905

characteristic: strain

text: Pathogen: clinical or host-associated sample from Shigella boydii ATCC 9905

characteristic: title


DMB SH20092

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: CDC

text: USA:GA

characteristic: geo loc name

text: Shigella 3

text: Homo sapiens

characteristic: host

text: Shigella flexneri 1921-71

characteristic: ontological term

text: Shigella flexneri

text: human

characteristic: source type

text: DMB SH20092


DMB SH20201

text: clinical/research| human

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: CDC

characteristic: collected by

characteristic: collection date

text: USA:GA

text: Shigella 1

text: Homo sapiens

text: Shigella dysenteriae CDC 2387-69

characteristic: isolate name alias

text: Shigella dysenteriae

characteristic: serotype

characteristic: serovar

text: human

text: DMB SH20201


DMB SH20100

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: CDC

text: USA:GA

text: Shigella 3

characteristic: group

text: Homo sapiens

text: Shigella flexneri 2783-71

text: Shigella flexneri

characteristic: organism

text: human

text: DMB SH20100


DMB SH20200

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: CDC

text: USA:GA

characteristic: geo loc name

text: Shigella 1

text: Homo sapiens

characteristic: host

text: Shigella dysenteriae CDC 3007-88

text: Shigella dysenteriae

text: human

text: DMB SH20200

characteristic: strain

characteristic: title


DMB SH20102

text: clinical/research| human

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: CDC

characteristic: collected by

characteristic: collection date

text: USA:GA

text: Shigella 3

text: Homo sapiens

text: Shigella flexneri CDC 6603-63

characteristic: isolate name alias

characteristic: ontological term

text: Shigella flexneri

text: human

characteristic: source type

text: DMB SH20102


DMB SH20107

text: clinical/research, human

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: CDC

text: USA:GA

text: Homo sapiens

text: CDC 796-83; CFSAN029279

text: Shigella flexneri

characteristic: serovar

text: human

text: DMB SH20107


DMB SH20191

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: CDC

text: USA:GA

characteristic: geo loc name

text: Homo sapiens

text: Shigella dysenteriae CDC 84-305

text: Shigella dysenteriae

characteristic: organism

characteristic: serotype

text: human

text: DMB SH20191


DMB SH20207

text: clinical/research| human

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: CDC

characteristic: collected by

text: USA:TX

text: Shigella 1

characteristic: group

text: Homo sapiens

characteristic: host

text: Shigella dysenteriae CDC 85-3131

text: Shigella dysenteriae

text: human

text: DMB SH20207

characteristic: strain

characteristic: title


DMB SH20208

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: CDC

characteristic: collection date

text: USA:MD

text: Shigella 1

text: Homo sapiens

text: Shigella dysenteriae CDC 98-3210

characteristic: isolate name alias

characteristic: ontological term

text: Shigella dysenteriae

text: human

characteristic: source type

text: DMB SH20208


DMB SH20024

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: USA:MD

characteristic: geo loc name

text: Shigella 3

text: Homo sapiens

text: Shigella flexneri 316

text: Shigella flexneri

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: human

text: DMB SH20024


DMB SH20023

text: clinical/research, human

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: FDA

characteristic: collected by

text: USA:MD

text: Homo sapiens

characteristic: host

text: 6853; CFSAN029284

text: Shigella sonnei

characteristic: organism

text: SS

characteristic: serovar

text: human

text: DMB SH20023

characteristic: strain

text: Pathogen: clinical or host-associated sample from Shigella sonnei


DMB SH20090

text: vegetable row crops (leafy)

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA

characteristic: collection date

text: USA:MN

text: Shigella sonnei SH20090

characteristic: isolate name alias

text: lettuce

characteristic: isolation source

text: lettuce vegetable food product:FOODON_00001998

characteristic: ontological term

text: Shigella sonnei

characteristic: serotype

text: SS

text: food

text: DMB SH20090

text: Pathogen: environmental/food/other sample from Shigella sonnei

characteristic: title


DMB SH20018

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

text: USA:MD

characteristic: geo loc name

text: Shigella 3

characteristic: group

text: Homo sapiens

text: Shigella flexneri 947 EDL

text: Shigella flexneri

text: human

characteristic: source type

text: DMB SH20018


DMB SH20026

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: FDA

characteristic: collected by

text: USA:MD

text: Shigella 3

text: Homo sapiens

characteristic: host

text: Shigella flexneri M 25-8A

text: Shigella flexneri

characteristic: organism

text: human

text: DMB SH20026

characteristic: strain


DMB SH20017

text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: FDA

characteristic: collection date

text: USA:MD

text: Shigella 3

text: Homo sapiens

text: Shigella flexneri SSU 6115

characteristic: isolate name alias

characteristic: ontological term

text: Shigella flexneri

characteristic: serotype

text: SS

characteristic: serovar

text: human

text: DMB SH20017


DMB SH20230

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Maryland DOH

text: USA:MD

characteristic: geo loc name

text: Homo sapiens

text: Shigella sonnei 3539-04

text: Shigella sonnei

text: SS

text: human

text: DMB SH20230

characteristic: title


DMB SH20033

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: FDA

characteristic: collected by

text: Homo sapiens

characteristic: host

text: Shigella sonnei E 613 A

text: Shigella sonnei

text: SS

text: human

characteristic: source type

text: DMB SH20033


DMB SH20160

text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: NAVY-Bethesda

characteristic: collection date

text: USA:MD

text: Homo sapiens

text: Shigella sonnei 357

characteristic: isolate name alias

text: outbreak

characteristic: isolation source

text: Shigella sonnei

characteristic: organism

text: SS

text: human

text: DMB SH20160

characteristic: strain


DMB SH20163

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: NAVY-Bethesda

text: USA:MD

text: Homo sapiens

text: Shigella sonnei 360

characteristic: ontological term

text: Shigella sonnei

characteristic: serotype

text: SS

characteristic: serovar

text: human

text: DMB SH20163


DMB SH20165

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: NAVY-Bethesda

characteristic: collected by

text: USA:MD

characteristic: geo loc name

text: Homo sapiens

text: Shigella sonnei 362

text: Shigella sonnei

text: SS

text: human

text: DMB SH20165

characteristic: title


DMB SH20158

text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: NAVY-Bethesda

characteristic: collection date

text: Egypt

text: Homo sapiens

characteristic: host

text: Shigella sonnei 1324

characteristic: isolate name alias

text: Shigella sonnei

text: SS

text: human

characteristic: source type

text: DMB SH20158


DMB SH20169

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: NAVY-Bethesda

text: Peru

text: Shigella 2

characteristic: group

text: Homo sapiens

text: Shigella dysenteriae BAA 617

text: Shigella dysenteriae

characteristic: organism

text: human

text: DMB SH20169

characteristic: strain


DMB SH20171

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: NAVY-Bethesda

text: Peru

text: Homo sapiens

text: Shigella sonnei Hep 7748

characteristic: ontological term

text: Shigella sonnei

characteristic: serotype

text: SS

characteristic: serovar

text: human

text: DMB SH20171


DMB SH20142

text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: NAVY-Bethesda

characteristic: collected by

characteristic: collection date

text: Somalia

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: Shigella sonnei RH1-1-4

text: Shigella sonnei

text: SS

text: human

text: DMB SH20142

characteristic: title


DMB SH20140

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: NAVY-Bethesda

text: Somalia

text: Shigella 1

characteristic: group

text: Homo sapiens

text: Shigella boydii RH1-3-9

characteristic: isolate name alias

text: Shigella boydii

text: human

characteristic: source type

text: DMB SH20140


DMB SH20134

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: NAVY-Bethesda

text: Somalia

text: Shigella 1

text: Homo sapiens

text: Shigella flexneri RH1-7-11

characteristic: ontological term

text: Shigella flexneri

characteristic: organism

text: human

text: DMB SH20134

characteristic: strain


DMB SH20138

text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: NAVY-Bethesda

characteristic: collected by

characteristic: collection date

text: Somalia

characteristic: geo loc name

text: Shigella 1

text: Homo sapiens

text: Shigella boydii RH12-23-11

text: Shigella boydii

characteristic: serotype

characteristic: serovar

text: human

text: DMB SH20138


DMB SH20139

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: NAVY-Bethesda

text: Somalia

text: Shigella 1

characteristic: group

text: Homo sapiens

characteristic: host

text: Shigella boydii RH12-26-2

text: Shigella boydii

text: human

text: DMB SH20139

characteristic: title


DMB SH20168

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: NAVY-Bethesda

text: Peru

text: Shigella 1

text: Homo sapiens

text: Shigella dysenteriae VAB 9775

characteristic: isolate name alias

characteristic: ontological term

text: Shigella dysenteriae

text: human

characteristic: source type

text: DMB SH20168


DMB SH107

text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: NBFAC

characteristic: collected by

characteristic: collection date

text: USA:MD

characteristic: geo loc name

text: Shigella 3

text: Homo sapiens

text: Shigella flexneri NBFAC05.035.03

text: Shigella flexneri

characteristic: organism

text: human

text: DMB SH107

characteristic: strain


DMB SH108

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: NBFAC

text: USA:MD

text: Shigella 3

characteristic: group

text: Homo sapiens

text: Shigella flexneri NBFAC05.035.04

text: Shigella flexneri

characteristic: serotype

characteristic: serovar

text: human

text: DMB SH108


DMB SH109

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: NBFAC

text: USA:MD

text: Shigella 1

text: Homo sapiens

characteristic: host

text: Shigella dysenteriae NBFAC05.035.05

characteristic: isolate name alias

text: Shigella dysenteriae

text: human

text: DMB SH109

characteristic: title


DMB SH114

text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: NBFAC

characteristic: collected by

characteristic: collection date

text: USA:MD

characteristic: geo loc name

text: Homo sapiens

text: Shigella sonnei NBFAC05.035.10

characteristic: ontological term

text: Shigella sonnei

text: SS

text: human

characteristic: source type

text: DMB SH114


DMB SH116

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: NBFAC

text: USA:MD

text: Shigella 1

characteristic: group

text: Homo sapiens

text: Shigella dysenteriae NBFAC05.035.12

text: Shigella dysenteriae

characteristic: organism

text: human

text: DMB SH116

characteristic: strain


DMB SH120

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: NBFAC

text: USA:MD

text: Shigella 2

text: Homo sapiens

characteristic: host

text: Shigella dysenteriae NBFAC05.035.16

text: Shigella dysenteriae

characteristic: serotype

characteristic: serovar

text: human

text: DMB SH120


DMB SH121

text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: NBFAC

characteristic: collected by

characteristic: collection date

text: USA:MD

characteristic: geo loc name

text: Shigella 1

text: Homo sapiens

text: Shigella boydii NBFAC05.035.17

characteristic: isolate name alias

text: Shigella boydii

text: human

text: DMB SH121

characteristic: title


DMB SH122

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: NBFAC

text: USA:MD

text: Homo sapiens

text: Shigella sonnei NBFAC05.035.18

characteristic: ontological term

text: Shigella sonnei

text: SS

text: human

characteristic: source type

text: DMB SH122


DMB SH123

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: NBFAC

text: USA:MD

text: Shigella 3

characteristic: group

text: Homo sapiens

text: Shigella flexneri NBFAC05.035.19

text: Shigella flexneri

characteristic: organism

text: human

text: DMB SH123

characteristic: strain


DMB SH125

text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: NBFAC

characteristic: collected by

characteristic: collection date

text: USA:MD

text: Shigella 3

text: Homo sapiens

characteristic: host

text: Shigella flexneri NBFAC05.035.21

text: Shigella flexneri

characteristic: serotype

characteristic: serovar

text: human

text: DMB SH125


DMB SH127

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: NBFAC

text: USA:MD

characteristic: geo loc name

text: Shigella 2

text: Homo sapiens

text: Shigella dysenteriae NBFAC05.035.23

characteristic: isolate name alias

text: Shigella dysenteriae

text: human

text: DMB SH127

characteristic: title


DMB SH20046

text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: Promega

text: USA:WI

text: Homo sapiens

text: Shigella sonnei PB 111

characteristic: ontological term

text: Shigella sonnei

text: SS

text: human

characteristic: source type

text: DMB SH20046


text: environmental-factory/production facility

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: USA:NY

text: environmental swab sponge

characteristic: isolation source

text: environmental (swab or sampling):GENEPIO_0001732| environmental sponge:CURATION_0000359

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

text: environmental

characteristic: strain

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


characteristic: External Id

text: AgResearch

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: altitude

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: anthropogenic terrestrial biome

characteristic: env biome

text: agricultural feature

characteristic: env feature

text: organism-associated habitat

text: Slovenia: Central Slovenia, Kosuta

characteristic: geo loc name

text: Capreolus capreolus

characteristic: host

characteristic: label

text: 46.05 N 14.5 W

characteristic: lat lon

text: bovine gut metagenome

characteristic: title


text: AgResearch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: anthropogenic terrestrial biome

text: agricultural feature

text: organism-associated habitat

text: Czech Republic: Central Bohemia, Mnichovo Hradiste

text: Capreolus capreolus

text: 50.54 N 14.98 W

text: bovine gut metagenome

characteristic: organism


characteristic: External Id

text: Volcani Research Center

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.plant-associated

text: Keywords: GSC:MIxS;MIGS:6.0

text: Wheat rhizosphere

text: soil

text: Israel: West Negev region

text: health

text: Triticum turgidum

text: PMID: 25232638

text: 31.21 N 34.27 E

text: Stutzerimonas stutzeri

text: PMID: 25232638

text: aerobe

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Stutzerimonas stutzeri


text: turkey

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: AZ

characteristic: collected by

text: USA:DC

characteristic: geo loc name

text: lean ground turkey

characteristic: isolation source

text: turkey (ground or minced):FOODON_00002714

characteristic: ontological term

text: Escherichia coli

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Escherichia coli


text: chicken

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: AZ

text: USA:DC

text: boneless chicken breast

text: chicken boneless:FOODON_00002702|chicken breast:FOODON_00002703

text: Escherichia coli

text: food

characteristic: title


text: chicken

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: AZ

text: USA:DC

text: boneless skinless chicken breast

text: chicken breast skinless|boneless:FOODON_00003364

text: Escherichia coli

text: food


characteristic: External Id

text: turkey

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: environmental/food/other

text: AZ

characteristic: collection date

text: USA:DC

text: ground turkey lean

text: Escherichia coli

characteristic: organism

text: food


text: turkey

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: AZ

text: USA:DC

text: ground turkey

text: Escherichia coli

text: food


text: chicken

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: AZ

characteristic: collected by

text: USA:DC

text: boneless skinless chicken thigh

text: chicken thigh skinless:FOODON_00003331|chicken boneless:FOODON_00002702

text: Escherichia coli

text: food

characteristic: strain


text: veterinary clinical/research| chicken

text: live

text: Pathogen.env

text: AZ

text: USA:DC

characteristic: geo loc name

text: boneless skinless chicken breast rib frozen

characteristic: isolation source

text: chicken breast (skinless, boneless):FOODON_00003364, chicken (frozen):FOODON_03304544, rib:UBERON_0002228

characteristic: ontological term

text: Escherichia coli

text: animal


text: turkey

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: AZ

text: USA:DC

text: ground turkey breast

text: turkey (ground or minced):FOODON_00002714|turkey breast:FOODON_00002690

text: Escherichia coli

text: food

characteristic: source type


text: chicken

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: AZ

text: USA:DC

text: chicken breast

text: chicken breast:FOODON_00002703

text: Escherichia coli

text: food

characteristic: title


characteristic: External Id

text: fish

text: live

text: Pathogen.cl

text: environmental/food/other

text: FDA-GCSL

characteristic: collection date

text: USA:HI

text: Thunnus alalunga

characteristic: host

text: albacore tuna anal vent

text: albacore:foodon_03411506| vent:uberon_2000298

text: Photobacterium angustum

text: food

text: Pathogen: clinical or host-associated sample from Photobacterium angustum


text: fish

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

text: environmental/food/other

text: FDA-GCSL

text: USA:HI

text: Thunnus albacares

text: yellowfin tuna anal vent

text: yellowfin tuna:foodon_03411074| vent:uberon_2000298

text: Photobacterium angustum

characteristic: organism

text: food


text: fish

characteristic: IFSAC+ Category

text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: environmental/food/other

text: FDA-GCSL

characteristic: collected by

text: USA:Hi

text: Thunnus albacares

text: yellowfin tuna anal vent

text: Photobacterium angustum

text: food


ATCC BAA-1194

text: fish

text: live

text: Pathogen.env

text: FDA-GCSL

characteristic: culture collection

text: marine fish

characteristic: isolation source

text: marine fish:FOODON_03413362

text: Photobacterium kishitanii

text: animal

text: ATCC BAA-1194

characteristic: strain

text: Pathogen: environmental/food/other sample from Photobacterium kishitanii

text: type strain of Photobacterium kishitanii

characteristic: type material


ATCC 25915

text: environmental-water

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA-GCSL

text: sea water

text: sea water:ENVO_00002149

characteristic: ontological term

text: Photobacterium angustum

text: environmental

characteristic: source type

text: ATCC 25915

text: Pathogen: environmental/food/other sample from Photobacterium angustum

text: type strain of Photobacterium angustum


ATCC 33977

characteristic: External Id

text: environmental-water

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA-GCSL

text: USA:HI

characteristic: geo loc name

text: sea water

text: sea water:ENVO_00002149

text: Photobacterium angustum

text: environmental

text: ATCC 33977

characteristic: title


ATCC 33975

text: environmental-water

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: FDA-GCSL

text: USA:HI

text: sea water

text: sea water:ENVO_00002149

text: Photobacterium angustum

text: environmental

text: ATCC 33975


ATCC 25521

text: fish

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA-GCSL

text: fish in the family leiognathidae

text: fish:foodon_03411222| leiognathidae:ncbitaxon_30846

text: Photobacterium leiognathi

characteristic: organism

text: food

text: ATCC 25521

text: Pathogen: environmental/food/other sample from Photobacterium leiognathi

text: type strain of Photobacterium leiognathi


text: multi-ingredient, fish

characteristic: IFSAC Category

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: FDA-GCSL

characteristic: collected by

characteristic: collection date

text: USA:AL

text: tuna salad

text: tuna salad:FOODON_03308735

text: Morganella morganii

text: food

text: Pathogen: environmental/food/other sample from Morganella morganii


text: fish

text: live

text: Pathogen.env

text: FDA-GCSL

text: USA:AL

text: mahi mahi fish

characteristic: isolation source

text: Klebsiella aerogenes

text: food

characteristic: strain

text: Pathogen: environmental/food/other sample from Klebsiella aerogenes


text: fish

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: FDA-GCSL

text: USA:NC

text: mahi mahi fish

text: Photobacterium damselae

text: food

text: Pathogen: environmental/food/other sample from Photobacterium damselae


text: dairy

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA

characteristic: fda lab id

text: USA:CA

text: cheese

text: cheese food product:FOODON_00001013

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|San Francisco Laboratory

characteristic: sequenced by

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


characteristic: External Id

text: fish

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

text: USA:CA

characteristic: geo loc name

text: smoked salmon

text: salmon (smoked):FOODON_03301805

text: Listeria monocytogenes

text: GenomeTrakr

text: United States Food and Drug Administration|Office of Regulatory Affairs|Pacific Southwest Food and Feed Laboratory

text: food

characteristic: title


text: environmental

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: FDA

characteristic: collected by

characteristic: collection date

text: USA:CA

text: environmental swab

characteristic: isolation source

text: environmental (swab or sampling):GENEPIO_0001732

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: environmental


text: environmental

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA

characteristic: fda lab id

text: USA:VA

text: environmental swab

text: Listeria monocytogenes

text: GenomeTrakr

text: United States Food and Drug Administration|Office of Regulatory Affairs|Southeast Food and Feed Laboratory

text: environmental

characteristic: strain


ATCC 19115

characteristic: External Id

text: clinical/research| human

characteristic: INSDC last update

text: live

text: Pathogen.cl

characteristic: culture collection

text: Homo sapiens

characteristic: host

characteristic: ontological term

text: Listeria monocytogenes

text: ATCC 19115; laboratory control strain for enteric research

text: human

characteristic: source type

text: ATCC 19115

text: Pathogen: clinical or host-associated sample from Listeria monocytogenes


text: Centre for Geobiology

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Evaluation of the potential for microbial induced corrosion (MIC) in Arcobacter anaerophilus IR-1 by isolation, characterization and genomics

characteristic: description

text: Norway: North Sea

characteristic: geo loc name

text: Aquifer

text: Halarcobacter anaerophilus

text: cell culture

characteristic: sample type

text: Microbe sample from Arcobacter anaerophilus IR-1

characteristic: title


Sulfolobales archaeon AZ1-454

text: Center for Genomic Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIMAG.water

characteristic: collection date

text: 1 meter

characteristic: depth

text: This biosample is a metagenomic assembly obtained from the hot spring metagenome sample SAMN03300049

characteristic: derived-from

text: Metagenomic sequences of a population of the Sulfolobales archaeon AZ1 obtained from a diversity study of a Mexican hot spring. These sequences will be important for comparative genomic studies.

text: extreme habitat

characteristic: env biome

text: acid hot spring

characteristic: env feature

text: muddy water

text: hot-spring

characteristic: environmental sample

text: Mexico: Los Azufres geothermal field, Michoacan

characteristic: isolate

text: muddy water from acid hot spring

characteristic: isolation source

text: 19.47 N 100.40 W

characteristic: lat lon

text: hot spring metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Candidatus Aramenus sulfurataquae

characteristic: organism

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Candidatus Aramenus sulfurataquae


characteristic: External Id

text: Ecole Normale Superieure de Lyon

characteristic: INSDC last update

text: live

characteristic: INSDC status

characteristic: NCBI submission model

text: MIGS.ba

characteristic: NCBI submission package

text: Pure culture from culture collection

characteristic: description

text: Marine hydrothermal vent

text: Black smoker

text: hydrothermal sediment

characteristic: estimated size

text: Greece: Palaeochori Bay, Milos Island

characteristic: geo loc name

text: Thermococcus aggregans

text: anaerobe

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Thermococcus aggregans


text: mollusks (non-bi-valve)

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: Indonesia

text: frozen raw whole cleaned octopus

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Salmonella enterica

characteristic: title


characteristic: External Id

text: fish

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

text: Viet Nam

text: tinfoil barb fish (Puntius altus)

characteristic: isolation source

text: puntius:NCBITAXON_27707|tinfoil barb:FOODON_00002748

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: food


text: multi-ingredient| seeds

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: Egypt

characteristic: geo loc name

text: white sesame seed paste

text: sesame seed paste:FOODON_03304154

text: Salmonella enterica

text: GenomeTrakr

text: food

characteristic: strain


text: multi-ingredient| grains

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: Malaysia

text: cooked flatbread plain vacuum packed

text: vacuum-packed:FOODON_03480027| flatbread:FOODON_00003000| plain:ENVO_00000086

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food


characteristic: External Id

text: crustaceans

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA

text: Myanmar

text: frozen whole cleaned soft shell crab

text: Salmonella enterica

text: GenomeTrakr

text: food

characteristic: source type

characteristic: title


text: crustaceans

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

text: Mexico

text: fresh crab meat super lump

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: food


Tetm

text: HHMI JRC

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: David Prescott, University of Colorado, Boulder

characteristic: biomaterial provider

text: macronucleus genome

characteristic: description

text: frozen stock

text: Tetmemena sp. SeJ-2015

text: whole organism

characteristic: sample type

characteristic: strain

text: possible minor contamination with Oxytricha nova sequences

text: Microbe sample from Tetmemena sp. SeJ-2015


SMMAGTRE

characteristic: External Id

text: University of Montana

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Cicadas have an interesting lifestyle, in which they develop underground while feeding on a poor diet of xylem from plant roots. To get the required complement of amino acids, cicadas have bacterial endosymbionts whose sole function is producing nutrients for the host. The genomes of these endosymbionts have interesting evolutionary histories, so we sequenced the symbionts of Magicicada tredecim to further study their evolution.

text: TRUE

characteristic: environmental sample

text: USA: King William County, Virginia

characteristic: geo loc name

text: Magicicada tredecim

characteristic: host

text: SMMAGTRE

characteristic: isolate

text: symbiont metagenome

characteristic: metagenome source

text: TRUE

characteristic: metagenomic

text: This biosample is a metagenomic assembly obtained from the symbiont metagenome sample SAMN03276246

characteristic: note

text: Candidatus Karelsulcia muelleri

text: Bacteriome

text: Microbe sample from Candidatus Karelsulcia muelleri


Lambda phage

characteristic: Genome size

text: Leidos Biomedical Research Inc.

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Viral

characteristic: NCBI submission model

characteristic: NCBI submission package

text: enterobacteria

text: cIind1ts857 Sam7

text: Lambdavirus lambda

characteristic: organism

text: Viral sample from Lambdavirus lambda

characteristic: title


characteristic: External Id

text: multi-ingredient| aquatic animals

characteristic: IFSAC+ Category

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:CA

text: Lm MBS-6676

text: mixed seafood salad

characteristic: isolation source

text: seafood salad:FOODON_03308493

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: multi-ingredient| aquatic animals

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:CA

characteristic: geo loc name

text: Lm MBS-6677

text: mixed seafood salad

text: seafood salad:FOODON_03308493

text: Listeria monocytogenes

text: GenomeTrakr

text: food


characteristic: External Id

text: multi-ingredient| crustaceans

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

text: USA:CA

text: Lm MBS-6686

text: shrimp seafood salad

text: shrimp salad:FOODON_03307787|seafood salad:FOODON_03308493

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food

characteristic: title


text: multi-ingredient| crustaceans

characteristic: IFSAC+ Category

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:CA

text: Lm MBS-6687

text: shrimp seafood salad

text: Listeria monocytogenes

text: GenomeTrakr

text: food


text: multi-ingredient

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

text: USA:GA

text: Lm MBS-6432

text: sandwich

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

characteristic: source type


text: multi-ingredient

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:GA

text: Lm MBS-6433

text: sandwich

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: strain


characteristic: External Id

text: multi-ingredient| poultry

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

text: USA:MD

characteristic: geo loc name

text: Lm MBS-5836

text: chicken sandwich

text: chicken:FOODON_03411457|sandwich:FOODON_03301906

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food


text: multi-ingredient| poultry

characteristic: IFSAC+ Category

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

text: USA:MD

text: Lm MBS-5837

text: chicken sandwich

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: title


text: vegetable

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:MD

text: Lm MBS-5896

text: raw cut vegetable

characteristic: isolation source

text: vegetable (raw):foodon_03302008| cut:envo_00000474

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food


text: vegetables

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:MD

text: Lm MBS-5897

text: raw cut vegetable

text: vegetable (raw):FOODON_03302008|cut:ENVO_00000474

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


characteristic: External Id

text: vegetable row crops (stem)

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

text: USA:MD

characteristic: geo loc name

text: Lm MBS-5906

text: raw cut celery

text: food (raw):foodon_03311126| cut:envo_00000474| celery stalk (raw):foodon_03301727

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: strain


text: vegetable row crops (stem)

characteristic: IFSAC+ Category

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

text: USA:MD

text: Lm MBS-5907

text: raw cut celery

text: food (raw):FOODON_03311126|cut:ENVO_00000474|celery stalk (raw):FOODON_03301727

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food


text: vegetable

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:MD

text: Lm MBS-5916

text: raw cut vegetable

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: food

characteristic: title


text: vegetables

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:MD

text: Lm MBS-5917

text: raw cut vegetable

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: sequenced by

text: food


characteristic: External Id

text: vegetable

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: USDA-ARS

text: USA:MD

characteristic: geo loc name

text: Lm MBS-5926

text: raw cut vegetable

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


text: vegetables

characteristic: IFSAC+ Category

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: USDA-ARS

text: USA:MD

text: Lm MBS-5927

text: raw cut vegetable

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: strain


text: vegetable

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

characteristic: collected by

text: USA:MD

text: Lm MBS-5936

text: raw cut vegetable

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: food


text: vegetables

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: USDA-ARS

characteristic: collection date

text: USA:MD

text: Lm MBS-5937

text: raw cut vegetable

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: title


characteristic: External Id

text: dairy

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: New Hampshire Public Health Lab

text: USA:NH

characteristic: geo loc name

text: aged raw milk cheese

text: curing or aging process:FOODON_03460253|food (raw):FOODON_03311126|milk:UBERON_0001913|cheese food product:FOODON_00001013

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: GenomeTrakr

characteristic: sequenced by

text: food


text: vegetable row crops (leafy)

characteristic: IFSAC+ Category

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA

characteristic: fda lab id

text: USA:WA

text: kale or spinach

text: kale leaf (raw):FOODON_03304859|spinach (whole, raw):FOODON_03301716

text: Listeria monocytogenes

text: GenomeTrakr

text: United States Food and Drug Administration|Office of Regulatory Affairs|Pacific Northwest Laboratory

text: food

characteristic: source type

characteristic: strain


text: vegetable row crops (leafy)

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

text: USA:WA

text: kale

characteristic: isolation source

text: kale leaf (raw):FOODON_03304859

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: food


characteristic: External Id

text: multi-ingredient

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA

characteristic: collection date

text: USA:WA

characteristic: geo loc name

text: smoothie blend

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: title


text: environmental

characteristic: IFSAC+ Category

characteristic: INSDC last update

text: live

text: Pathogen.env

text: FDA

characteristic: fda lab id

text: USA:FL

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

text: Salmonella enterica

text: GenomeTrakr

text: United States Food and Drug Administration|Office of Regulatory Affairs|Southeast Food and Feed Laboratory

characteristic: sequenced by

text: environmental

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: environmental

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: FDA

text: USA:TX

text: environmental swab

text: Listeria monocytogenes

text: GenomeTrakr

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

text: environmental

characteristic: source type

characteristic: strain


characteristic: External Id

text: sprouts

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

text: USA:ND

text: sprout

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: food


text: environmental-factory/production facility| multi-ingredient

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: VA

characteristic: collection date

text: USA:NC

characteristic: geo loc name

text: environmental swab sponge drain salad preparation room

text: environmental (swab or sampling):GENEPIO_0001732| environmental sponge:CURATION_0000359| plumbing drain:ENVO_01000924| prepared seafood product:FOODON_00002471| salad:FOODON_03316042

text: Listeria monocytogenes

text: environmental

characteristic: title


text: environmental-factory/production facility

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: VA

text: USA:NC

text: squeegie

text: Listeria monocytogenes

text: environmental

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: VA

text: USA:NC

text: environmental swab sponge floor mat

text: environmental (swab or sampling):GENEPIO_0001732| environmental floor:CURATION_0000360| environmental sponge:CURATION_0000359| floor mat:CURATION_0000330

text: Listeria monocytogenes

text: environmental

characteristic: source type

characteristic: strain


characteristic: External Id

text: live

text: Pathogen.env

text: VA

characteristic: collected by

text: USA:NC

text: drain

characteristic: isolation source

text: plumbing drain:ENVO_01000924

characteristic: ontological term

text: Listeria monocytogenes

text: environmental


text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: VA

text: USA:NC

text: environmental swab sponge floor drain

text: environmental (swab or sampling):GENEPIO_0001732| environmental floor:CURATION_0000360| environmental sponge:CURATION_0000359| floor drain:CURATION_0000332

text: Listeria monocytogenes

characteristic: organism

text: environmental


text: live

text: Pathogen.env

characteristic: NCBI submission package

text: VA

characteristic: collection date

text: USA:NC

characteristic: geo loc name

text: broom

text: Listeria monocytogenes

text: environmental


text: University of Rennes 1

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: Matthieu Revest

text: France: Rennes

text: Homo sapiens

characteristic: host

text: carriage

characteristic: host disease

text: Nasal carriage

text: 48.118857 N 1.692368 W

characteristic: lat lon

text: Staphylococcus aureus

text: Pathogen: clinical or host-associated sample from Staphylococcus aureus

characteristic: title


text: University of Rennes 1

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: Matthieu Revest

text: France: Rennes

text: Homo sapiens

text: sepsis

text: blood

text: 48.118857 N 1.692368 W

text: Staphylococcus aureus


characteristic: External Id

text: fish

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA

characteristic: fda lab id

text: Indonesia

text: frozen whole milkfish

text: fish (frozen):FOODON_03301083|milkfish:FOODON_03411909|whole:FOODON_03430131

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Pacific Southwest Food and Feed Laboratory

characteristic: sequenced by

text: food

characteristic: source type

text: Chanos chanos

characteristic: specific host

characteristic: strain


text: Seung Kim Lab, Developmental Biology, Stanford University

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: cell type

text: embryonic day 15.17

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

characteristic: organism

text: pancreas

text: Pancreas

characteristic: tissue


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Endocrine

text: embryonic day 15.18

text: Mus musculus

text: pancreas

text: Pancreas

characteristic: title


text: live

text: Generic

characteristic: SRA accession

text: Duct

text: embryonic day 15.6

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: Duct

text: embryonic day 15.10

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: Neurog3 null

text: embryonic day 15.7

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: Endocrine

text: embryonic day 15.11

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: embryonic day 15.9

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: Endocrine

text: embryonic day 15.16

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: embryonic day 15.14

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: Neurog3 null

text: embryonic day 15.5

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: Duct

text: embryonic day 15.8

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: Duct

text: embryonic day 15.13

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: Neurog3 null

text: embryonic day 15.12

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: embryonic day 15.19

text: Mus musculus

text: pancreas

text: Pancreas


text: live

text: Generic

text: Duct

text: embryonic day 15.15

text: Mus musculus

text: pancreas

text: Pancreas


text: Wageningen University

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Mycoplasma hyopneumoniae is an important pathogen for pigs causing enzootic pneumoniae. The current sample is obtained from a culture of M.hyo and was collected to analyse gene transcription.

characteristic: description

text: Netherlands: Boxmeer

characteristic: geo loc name

text: culture

characteristic: isolation source

text: Mesomycoplasma hyopneumoniae

text: Cell culture

characteristic: sample type

text: Strain 11

text: Mycoplasma hyopneumoniae culture sample


text: environmental

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Washington State Department of Health | Public Health Laboratories

characteristic: collected by

text: USA:WA

text: environmental swab

text: environmental (swab or sampling):genepio_0001732

characteristic: ontological term

text: Listeria monocytogenes

text: environmental

characteristic: source type

characteristic: strain


characteristic: External Id

text: dairy

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:WA

text: cheese

text: cheese food product:foodon_00001013

text: Listeria monocytogenes

characteristic: organism

text: food


text: environmental-water

text: live

text: Pathogen.env

characteristic: SRA accession

text: Hawaii State Department of Health

characteristic: collection date

text: USA:HI

characteristic: geo loc name

text: sewage sand island waste water

text: sewage:ENVO_00002018, sand:ENVO_01000017, island:ENVO_00000098

text: Derby

characteristic: serovar

text: environmental

text: enterica

characteristic: subspecies

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Derby

characteristic: title


text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: Hawaii State Department of Health

text: USA:HI

text: sewage sand island waste water

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Derby

text: Derby

text: environmental

text: enterica


text: environmental

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: FDA

characteristic: collected by

characteristic: fda lab id

text: USA:CA

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|San Francisco Laboratory

characteristic: sequenced by

text: environmental

characteristic: source type

characteristic: strain