text: herbs

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: fda lab id

text: Turkey

text: linden flower

text: linden plant:FOODON_03412051

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Southeast Food and Feed Laboratory

characteristic: sequenced by

text: food

characteristic: source type

characteristic: strain


status: PUBLIC

characteristic: External Id

text: veterinary clinical/research, cow

tag: attribute

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FLUFL

characteristic: collection date

text: USA:FL

characteristic: geo loc name

text: Bos taurus

characteristic: host

text: feces (Bos taurus)

characteristic: isolation source

text: bos taurus:NCBITAXON_9913, feces:UBERON_0001988

text: Escherichia coli

characteristic: organism

text: animal

text: Pathogen: environmental/food/other sample from Escherichia coli

characteristic: title


text: environmental-water

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: HI

characteristic: collected by

text: USA:HI

text: sewage

characteristic: ontological term

text: Bareilly

characteristic: serovar

text: environmental

text: enterica

characteristic: sub species

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Bareilly


characteristic: External Id

text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: Salmonella enterica subsp. enterica serovar Bareilly

text: Bareilly

text: environmental

characteristic: source type

characteristic: strain

text: enterica


Megaphragma amalphitanum

text: Institute of Bioengineering

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: age

text: Italy

characteristic: geo loc name

text: Megaphragma amalphitanum

text: pooled male and female

characteristic: sex

text: Model organism or animal sample from Megaphragma amalphitanum


text: meat

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FERA

characteristic: collected by

text: United Kingdom

text: retail meat

characteristic: isolation source

text: meat food product:FOODON_00001006

text: Campylobacter jejuni

characteristic: organism

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

text: Pathogen: environmental/food/other sample from Campylobacter jejuni

characteristic: title


characteristic: External Id

text: meat

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: FERA

text: United Kingdom

text: retail meat

text: meat food product:FOODON_00001006

characteristic: ontological term

text: Campylobacter coli

text: GenomeTrakr

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Campylobacter coli


text: meat

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FERA

text: United Kingdom

text: retail meat

text: meat food product:FOODON_00001006

text: Campylobacter sp. CFSAN038799

text: GenomeTrakr

text: food

characteristic: strain

text: Pathogen: environmental/food/other sample from Campylobacter sp. CFSAN038799


text: Moffitt Cancer Center

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: cell line

text: epithelial

characteristic: cell type

text: adenocarcinoma

characteristic: disease

text: grade IV

characteristic: disease stage

text: Homo sapiens

text: prostate cancer cells

text: prostate; derived from metastatic site: bone

characteristic: tissue

text: PC-3 + rtTA2 + tdTom + Dox #1


characteristic: External Id

text: Moffitt Cancer Center

text: live

text: Generic

text: epithelial

text: adenocarcinoma

text: grade IV

text: Homo sapiens

characteristic: organism

text: prostate cancer cells

text: PC-3 + rtTA2 + TTP-tdTom + Dox #3

characteristic: title


text: Moffitt Cancer Center

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: epithelial

text: adenocarcinoma

text: grade IV

text: Homo sapiens

text: prostate cancer cells

text: PC-3 + rtTA2 + TTP-tdTom + Dox #2


text: Moffitt Cancer Center

characteristic: INSDC last update

text: live

text: Generic

text: epithelial

text: adenocarcinoma

text: grade IV

text: Homo sapiens

text: prostate cancer cells

text: PC-3 + rtTA2 + TTP-tdTom + Dox #1


text: Moffitt Cancer Center

text: live

characteristic: INSDC status

text: Generic

text: epithelial

text: adenocarcinoma

text: grade IV

text: Homo sapiens

text: prostate cancer cells

text: PC-3 + rtTA2 + tdTom + Dox #3


text: Moffitt Cancer Center

text: live

text: Generic

characteristic: NCBI submission model

text: epithelial

text: adenocarcinoma

text: grade IV

text: Homo sapiens

text: prostate cancer cells

text: PC-3 + rtTA2 + tdTom + Dox #2


text: veterinary clinical/research| cow

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FLUFL

characteristic: collected by

characteristic: collection date

text: USA:FL

characteristic: geo loc name

text: Bos taurus

characteristic: host

text: feces (Bos taurus)

characteristic: isolation source

text: bos taurus:NCBITAXON_9913| feces:UBERON_0001988

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type


characteristic: External Id

text: veterinary clinical/research| cow

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FLUFL

text: USA:FL

text: Bos taurus

text: feces (Bos taurus)

text: Escherichia coli

text: animal

characteristic: strain


text: environmental-water

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: Salmonella enterica

characteristic: organism

text: London

characteristic: serovar

text: environmental

text: Pathogen: environmental/food/other sample from Salmonella enterica

characteristic: title


text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: London

text: environmental

text: enterica

characteristic: sub species

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar London


text: environmental-water

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

characteristic: collected by

characteristic: collection date

text: USA:HI

characteristic: geo loc name

text: sewage

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica subsp. enterica serovar London

text: London

text: environmental

text: enterica


characteristic: External Id

text: environmental-water

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: Kiambu

text: environmental

characteristic: source type

characteristic: strain

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Kiambu


text: environmental-water

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: Salmonella enterica subsp. enterica serovar Kiambu

characteristic: organism

text: Kiambu

characteristic: serovar

text: environmental

text: enterica

characteristic: title


text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: Johannesburg

text: environmental

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Johannesburg


text: environmental-water

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

characteristic: collected by

characteristic: collection date

text: USA:HI

characteristic: geo loc name

text: sewage

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Johannesburg

text: Johannesburg

text: environmental

text: enterica

characteristic: sub species


name: sponge metagenome, Aplysina aerophoba, Piran, Slovenia, Adriatic Sea, Gulf of Piran

characteristic: External Id

text: University of Wuerzburg

text: live

text: Metagenome or environmental

text: Slovenia: Piran, Adriatic Sea, Gulf of Piran

text: Aplysina aerophoba

characteristic: host

text: 45.3035 N 13.33339999 E

characteristic: lat lon

text: sponge metagenome

text: Metagenome or environmental sample from sponge metagenome

type: derived-from


tag: Namespace:DOE Joint Genome Institute

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: MIGS.eu

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: Aspergillus papuensis

text: CBS 841.96

characteristic: strain

text: Aspergillus papuensis CBS 841.96 Minimal Draft

text: culture from holotype of Aspergillus papuensis

characteristic: type material


text: DOE Joint Genome Institute

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus chrysellus

characteristic: organism

text: CBS 472.65

text: Aspergillus chrysellus CBS 472.65 Minimal Draft

characteristic: title

text: culture from holotype of Aspergillus chrysellus


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus frequens

text: CBS 586.65

text: Aspergillus frequens CBS 586.65 Minimal Draft

text: culture from holotype of Aspergillus frequens


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus turcosus

text: IBT 27921

text: Aspergillus turcosus IBT 27921 Minimal Draft

text: culture from holotype of Aspergillus turcosus


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Sympoventuria capensis

text: CBS 120136

text: Sympoventuria capensis CBS 120136 Standard Draft

text: culture from holotype of Sympoventuria capensis


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Stutzerimonas stutzeri RCH2

text: Pseudomonas stutzeri RCH2


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Stutzerimonas stutzeri RCH2

text: Pseudomonas stutzeri RCH2


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Netherlands

characteristic: geo loc name

text: 52.2649 N 4.7562 E

text: Entomortierella echinosphaera

text: CBS 575.75

text: Entomortierella echinosphaera CBS 575.75

text: culture from holotype of Mortierella echinosphaera


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus brevipes

text: CBS 118.53

text: Aspergillus brevipes CBS 118.53 Minimal Draft

text: culture from isotype of Aspergillus brevipes


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

characteristic: culture-collection

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus egyptiacus

text: CBS 656.73

text: Aspergillus egyptiacus CBS 656.73 Minimal Draft

text: culture from neotype of Aspergillus egyptiacus


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus deflectus

text: CBS 109.55

text: Aspergillus deflectus CBS 109.55 Minimal Draft

text: culture from neotype of Aspergillus deflectus


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus microcysticus

text: CBS 120.58

text: Aspergillus microcysticus CBS 120.58 Minimal Draft

text: culture from neotype of Aspergillus microcysticus


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus iizukae

text: CBS 541.69

text: Aspergillus iizukae CBS 541.69 Minimal Draft

text: culture from holotype of Aspergillus iizukae


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus neoflavipes

text: CBS 260.73

text: Aspergillus neoflavipes CBS 260.73 Minimal Draft

text: culture from holotype of Aspergillus neoflavipes


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Tomentellopsis submollis

text: Tomentellopsis submollis L601 Standard Draft


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus capensis

text: CBS 138188

text: Aspergillus capensis CBS 138188 Minimal Draft

text: culture from holotype of Aspergillus capensis


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus luppiae

text: CBS 653.74

text: Aspergillus luppii CBS 653.74 Minimal Draft

text: culture from holotype of Aspergillus luppiae


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aspergillus duricaulis

text: CBS 481.65

text: Aspergillus duricaulis CBS 481.65 Minimal Draft

text: culture from neotype of Aspergillus duricaulis


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Phaeovulum vinaykumarii

text: Rhodobacter vinaykumarii JA123

text: type strain of Rhodobacter vinaykumarii


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Canada: Quebec

text: Entoleuca mammata

text: Entoleuca mammata CFL468 Standard Draft


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Aeromonas hydrophila

text: Aeromonas sp. RU34C


text: Chinese Academy of Agricultural Science

text: live

text: Invertebrate

text: adult

characteristic: age

characteristic: collection date

text: China

text: tea plant

characteristic: host

text: Experimental insects were reared in the laboratory on Longjing 43 cultivate tea plants

characteristic: isolate

text: Empoasca onukii was collected from the Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China

characteristic: isolation source

text: Matsumurasca onukii

text: female

characteristic: sex

text: head

characteristic: tissue

text: Invertebrate sample from Matsumurasca onukii


text: Chinese Academy of Agricultural Science

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Invertebrate

characteristic: SRA accession

text: adult

text: China

text: tea plant

text: Experimental insects were reared in the laboratory on Longjing 44 cultivate tea plants

text: Matsumurasca onukii

text: female

text: head


text: Chinese Academy of Agricultural Science

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: NCBI submission model

text: adult

text: China

text: tea plant

text: Experimental insects were reared in the laboratory on Longjing 45 cultivate tea plants

text: Matsumurasca onukii

characteristic: organism

text: male

text: head


characteristic: External Id

text: Chinese Academy of Agricultural Science

text: live

text: Invertebrate

characteristic: NCBI submission package

text: adult

text: China

characteristic: geo loc name

text: tea plant

text: Experimental insects were reared in the laboratory on Longjing 46 cultivate tea plants

text: Matsumurasca onukii

text: male

text: head

characteristic: title


text: herbs, seeds

characteristic: IFSAC Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: India

text: celery seed

text: celery seed:FOODON_03301862

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

text: food

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: herbs

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: Canada

text: fresh cilantro

characteristic: isolation source

text: food fresh:FOODON_00002457, coriander plant:FOODON_03411381

text: Salmonella enterica

text: GenomeTrakr

text: food


characteristic: External Id

text: crustaceans

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA

text: Viet Nam

text: frozen shell on shrimp

text: shell:UBERON_0006612, shrimp (frozen):FOODON_03301169

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: food


text: multi-ingredient, mollusks (non-bi-valve)

characteristic: IFSAC Category

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

text: Japan

characteristic: geo loc name

text: frozen seasoned octopus

text: frozen:PATO_0001985, food (seasoned):FOODON_00002733, octopus:FOODON_03411514

text: Salmonella enterica

text: GenomeTrakr

text: food

characteristic: title


text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: Venezuela

text: Pre-Cooked Corn Meal

text: Salmonella enterica

text: GenomeTrakr


text: seeds, other (flavoring or seasoning)

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: Syria

text: cumin seed

text: cumin seed whole, dried:FOODON_00003024

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

characteristic: source type


text: plant

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: Nigeria

text: dried bitter leaf

text: food (dried):FOODON_03307539, leaf:PO_0025034

text: Salmonella enterica

text: GenomeTrakr

text: food

characteristic: strain


characteristic: External Id

text: crustaceans

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA

text: Bangladesh

text: frozen shrimp

characteristic: isolation source

text: shrimp (frozen):FOODON_03301169

text: Salmonella enterica

text: GenomeTrakr

text: food


text: herbs

characteristic: IFSAC Category

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

text: Egypt

characteristic: geo loc name

text: basil

text: basil food product:FOODON_00003044

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: food


text: crustaceans

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: Viet Nam

text: frozen shrimp

text: shrimp (frozen):FOODON_03301169

text: Salmonella enterica

text: GenomeTrakr

text: food

characteristic: title


text: fish

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: Sri Lanka

text: dried maldive fish chips

text: fish (dried):FOODON_03309909, snack food:FOODON_03315013

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

characteristic: source type


KreDeu

text: IHI Zittau / TU Dresden

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIGS/MIMS/MIMARKS.miscellaneous

text: MIGS.eu

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: deciduous woodland

characteristic: env biome

text: beech forest

characteristic: env feature

text: beech wood stump

text: 50.6 Mbp

characteristic: estimated size

text: Germany: Zittauer Gebirge

text: fruit body from beech wood stump

text: 50.8489 N 14.7609 E

characteristic: lat lon

text: Ustulina deusta

text: dikaryon

characteristic: ploidy

text: sexual/asexual

characteristic: propagation

text: DSM 104547

characteristic: strain

text: Kretzschmaria deusta DSM 104547


characteristic: External Id

text: beef

characteristic: IFSAC+ Category

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Texas Department of State Health Services

characteristic: collected by

characteristic: collection date

text: USA:TX

characteristic: geo loc name

text: ground beef

characteristic: isolation source

text: ground beef food product:FOODON_00001282

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: food

characteristic: title


text: multi-ingredient

characteristic: IFSAC Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FLAG

text: USA:FL

text: cuban sandwich

text: cuban:ANCESTRO_0405, sandwich:FOODON_03301906

text: Listeria monocytogenes

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


characteristic: External Id

text: environmental-water

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: Muenster

characteristic: serovar

text: environmental

characteristic: strain

text: enterica

characteristic: sub species

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Muenster


text: fish

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: Myanmar

text: tilapia

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food


text: fish, other animal

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:MD

characteristic: geo loc name

text: hybrid tilapia

characteristic: isolation source

text: hybrid:NCBITAXON_37965, tilapia:FOODON_03412434

characteristic: ontological term

text: Bacillus cereus

characteristic: organism

text: animal

text: Pathogen: environmental/food/other sample from Bacillus cereus

characteristic: title


tea leafhopper

characteristic: External Id

text: Chinese Academy of Agricultural Science

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Invertebrate

characteristic: SRA accession

text: adult

characteristic: age

text: China

text: tea plant

characteristic: host

text: Experimental insects were reared in the laboratory on Longjing 43 cultivate tea plants

characteristic: isolate

text: Empoasca onukii was collected from the Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China

text: Matsumurasca onukii

text: head

characteristic: tissue

text: Invertebrate sample from Matsumurasca onukii


text: dairy| other (confectionery)

text: FDA Center for Food Safety and Applied Nutrition

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

text: USA:TX

text: ice cream product

text: ice cream food product:FOODON_00001045

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

characteristic: source type

characteristic: strain


characteristic: External Id

text: Southeast University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: ph+E(z)+CtBP RNAi-1

characteristic: RNAi

characteristic: cell line

text: Drosophila melanogaster

characteristic: organism

text: Drosophila-Kc-ph+E(z)+CtBP RNAi-1

characteristic: title


text: Southeast University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: ph+E(z)+CtBP RNAi-2

characteristic: SRA accession

text: Drosophila melanogaster

text: Drosophila-Kc-ph+E(z)+CtBP RNAi-2


text: Southeast University

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ph+E(z)+CtBP RNAi-3

text: Drosophila melanogaster

text: Drosophila-Kc-ph+E(z)+CtBP RNAi-3


text: Southeast University

text: live

text: Generic

text: ph+E(z) RNAi-3

text: Drosophila melanogaster

text: Drosophila-Kc-ph+E(z) RNAi-3


text: Southeast University

text: live

text: Generic

text: ph+E(z) RNAi-2

text: Drosophila melanogaster

text: Drosophila-Kc-ph+E(z) RNAi-2


text: Southeast University

text: live

text: Generic

text: ph+E(z) RNAi-1

text: Drosophila melanogaster

text: Drosophila-Kc-ph+E(z) RNAi-1


text: Southeast University

text: live

text: Generic

text: Control RNAi-3

text: Drosophila melanogaster

text: Drosophila-Kc-Control RNAi-3


text: Southeast University

text: live

text: Generic

text: Control RNAi-2

text: Drosophila melanogaster

text: Drosophila-Kc-Control RNAi-2


text: Southeast University

text: live

text: Generic

text: Control RNAi-1

text: Drosophila melanogaster

text: Drosophila-Kc-Control RNAi-1


text: multi-ingredient, chicken

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: Mexico

characteristic: geo loc name

text: chicken flavor chips

characteristic: isolation source

text: chicken:FOODON_03411457, snack food:FOODON_03315013, snack food:FOODON_03315013

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Arkansas Laboratory

text: food

text: Pathogen: environmental/food/other sample from Salmonella enterica


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: Guyana

text: Dry Shark Fillet

text: Salmonella enterica

text: GenomeTrakr

characteristic: sequenced by

characteristic: strain


text: crustaceans

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: Bangladesh

text: frozen shrimp

text: shrimp (frozen):FOODON_03301169

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

text: food

characteristic: source type

characteristic: title


text: plant

characteristic: IFSAC Category

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

text: Nigeria

text: dried bitter leaf

text: food (dried):FOODON_03307539, leaf:PO_0025034

text: Salmonella enterica

text: GenomeTrakr

text: food


text: seeded vegetables (solanaceous)

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: Ghana

characteristic: geo loc name

text: ground red pepper

text: pepper (ground):FOODON_03301526, hot pepper food product:FOODON_00001956

text: Salmonella enterica

text: GenomeTrakr

text: food


characteristic: External Id

text: crustaceans

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: China

text: frozen shrimp

characteristic: isolation source

text: shrimp (frozen):FOODON_03301169

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: food


text: multi-ingredient, grains

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: El Salvador

text: horchata rice powder

text: rice powder:FOODON_03309871, horchata:FOODON_00002938

text: Salmonella enterica

text: GenomeTrakr

characteristic: sequenced by

text: food

characteristic: strain


text: University of Plovdiv

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Plant

characteristic: SRA accession

text: rosette leavs

characteristic: dev stage

text: Rhodopi mountain

characteristic: ecotype

text: Bulgaria

text: Haberlea rhodopensis

characteristic: organism

text: leavs

characteristic: tissue

text: Plant sample from Haberlea rhodopensis

characteristic: title


text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

text: USA:WI

characteristic: geo loc name

text: Environmental floor drain cover

text: Listeria monocytogenes

text: GenomeTrakr


characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: Operculomyces laminatus

text: Operculomyces laminatus JEL223 Standard Draft

text: culture from holotype of Operculomyces laminatus

characteristic: type material


text: DOE Joint Genome Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIGS.ba

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIGS:6.0

text: Stutzerimonas stutzeri RCH2

characteristic: strain

text: Pseudomonas stutzeri RCH2


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Stutzerimonas stutzeri RCH2

characteristic: organism

text: Pseudomonas stutzeri RCH2


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Apiospora arundinis

text: NRRL 25634

text: Apiospora montagnei

characteristic: teleomorph

text: Apiospora montagnei NRRL 25634

characteristic: title


text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

text: Keywords: GSC:MIxS;MIGS:6.0

text: Metamycoplasma equirhinis

text: ATCC 29420

text: Mycoplasma equirhinis ATCC 29420

text: type strain of Mycoplasma equirhinis


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:6.0

text: Sphaerodes sp. 'pseudofimicola'

text: CBS 108937

text: Sphaerodes pseudofimicola CBS 108937 Standard Draft


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Cladosporium herbarum

text: CBS 121621

text: Davidiella tassiana

text: Davidiella tassiana CBS 121621

text: culture from epitype of Dematium herbarum


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Colletotrichum simmondsii

text: CBS 122122

text: Colletotrichum simmondsii CBS 122122 Standard Draft

text: culture from holotype of Colletotrichum simmondsii


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Colletotrichum salicis

text: CBS 607.94

text: Colletotrichum salicis CBS 607.94 Standard Draft

text: culture from epitype of Sphaeria salicis


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Symmetrospora marina

text: PYCC 5050

text: Rhodotorula marina PYCC 5050 Standard Draft


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Cystobasidium lysinophilum

text: PYCC 5835

text: Rhodotorula lysiniphila PYCC 5835 Standard Draft


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Cystobasidium laryngis

text: PYCC 5809

text: Rhodotorula laryngis PYCC 5809 Standard Draft


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Stutzerimonas stutzeri

text: Pseudomonas stutzeri RCH2


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Sakaguchia lamellibrachiae

text: PYCC 5801

text: Rhodotorula lamellibrachii PYCC 5801 Standard Draft


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: USA: North Carolina

text: soil, litter

text: 36 N 79 W

text: Linnemannia elongata

text: MIGS Eukaryotic sample from Linnemannia elongata


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Metamycoplasma buccale

text: ATCC 23636

text: Mycoplasma buccale ATCC 23636

text: type strain of Mycoplasma buccale


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Dothidea sambuci

text: CBS 198.58

text: Dothidea sambuci CBS 198.58


text: Naef Lab, SV, EPFL

text: live

text: Generic

text: 12 weeks

characteristic: age

characteristic: circadian time

text: Mus musculus

text: Cochlea Total RNA

text: sham-operated

characteristic: status

text: CBA/Sca

text: Cochlea

characteristic: tissue


characteristic: External Id

text: Naef Lab, SV, EPFL

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: 12 weeks

text: Mus musculus

text: Cochlea Total RNA

text: adrenalectomized

text: CBA/Sca

text: Cochlea


Neohaematopinus pacificus

text: University of Illinois

characteristic: INSDC last update

text: live

text: Invertebrate

characteristic: collection date

text: USA: Black Hills, junction of FR222 and FR222-2C, North America, South Dakota, Lawrence County

text: Tamias minimus

characteristic: host

characteristic: isolate

text: 44.3793 N 103.9497 W

text: Neohaematopinus pacificus

text: whole specimen

text: Invertebrate sample from Neohaematopinus pacificus


DSM 22532

text: Fujian Academy of Agricultural Sciences

text: live

text: Microbe, viral or environmental

characteristic: culture-collection

text: Russia

characteristic: geo loc name

text: soda solonchak soil

characteristic: isolation source

text: Alkalihalobacterium alkalinitrilicum

characteristic: organism

text: cell culture

characteristic: sample type

text: DSM 22532

characteristic: strain

text: Microbe sample from Alkalihalobacterium alkalinitrilicum

text: type strain of Bacillus alkalinitrilicus

characteristic: type material


text: CSIRO

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CSIRO Agriculture and Food

characteristic: biomaterial provider

text: Sally Walford

characteristic: collected by

characteristic: cultivar

text: microdissected ovule outer integument from flowers 4 days before anthesis (-4 DPA)

characteristic: description

text: 4 days before anthesis

characteristic: dev stage

text: wt

characteristic: genotype

text: Australia: Canberra

text: glasshouse

text: Gossypium hirsutum

text: wildtype

characteristic: phenotype

text: ovule outer integument (-4DPA-wt)

text: Plant sample from Gossypium hirsutum

characteristic: title


characteristic: External Id

text: CSIRO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Plant

text: CSIRO Agriculture and Food

text: Sally Walford

text: microdissected ovule outer integument from flowers 2 days before anthesis (-2 DPA)

text: 2 days before anthesis

text: wt

text: Australia: Canberra

characteristic: geo loc name

text: glasshouse

characteristic: isolation source

text: Gossypium hirsutum

characteristic: organism

text: wildtype

text: ovule outer integument (-2DPA-wt)

characteristic: tissue

text: Plant sample from Gossypium hirsutum


wtzero

text: CSIRO

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: CSIRO Agriculture and Food

text: Sally Walford

text: microdissected ovule outer integument from flowers on the morning of anthesis (0 DPA)

text: anthesis

text: wt

text: Australia: Canberra

text: glasshouse

text: Gossypium hirsutum

text: wildtype

text: ovule outer integument (0DPA-wt)

text: Plant sample from Gossypium hirsutum


text: CSIRO

text: live

text: Plant

text: CSIRO Agriculture and Food

characteristic: biomaterial provider

text: Sally Walford

characteristic: collected by

characteristic: cultivar

text: microdissected ovule outer integument from flowers of GhMYB25 RNAi line on the morning of anthesis (0 DPA)

characteristic: description

text: anthesis

characteristic: dev stage

text: GhMYB25 RNAi line T4 generation

text: Australia: Canberra

text: glasshouse

text: Gossypium hirsutum

text: delayed fibre initation: short fibre: reduced leaf trichomes

text: ovule outer integument (0DPA-MYB25RNAi)

text: Plant sample from Gossypium hirsutum


characteristic: External Id

text: CSIRO

characteristic: INSDC center name

text: live

text: Plant

text: CSIRO Agriculture and Food

text: Sally Walford

text: microdissected ovule outer integument from flowers of GhMYB25-Like RNAi line on the morning of anthesis (0 DPA)

text: anthesis

text: GhMYB25-Like RNAi line T4 generation

characteristic: genotype

text: Australia: Canberra

text: glasshouse

text: Gossypium hirsutum

text: fibreless

characteristic: phenotype

text: ovule outer integument (0DPA-MYB25LRNAi)

text: Plant sample from Gossypium hirsutum

characteristic: title


text: CSIRO

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Plant

text: CSIRO Agriculture and Food

text: Sally Walford

text: microdissected ovule outer integument from flowers of GhHD-1 RNAi line on the morning of anthesis (0 DPA)

text: anthesis

text: GhHD-1 RNAi line T4 generation

text: Australia: Canberra

characteristic: geo loc name

text: glasshouse

characteristic: isolation source

text: Gossypium hirsutum

characteristic: organism

text: delayed fibre initation: glabrous plant

text: ovule outer integument (0DPA-HD1RNAi)

text: Plant sample from Gossypium hirsutum


text: CSIRO

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

text: CSIRO Agriculture and Food

text: Sally Walford

text: microdissected ovule outer integument from flowers of a null segregant line from MYB25RNAi transformant on the morning of anthesis (0 DPA)

text: anthesis

text: Null segregant from GhMYB25RNAi line T4 generation

text: Australia: Canberra

text: glasshouse

text: Gossypium hirsutum

text: wildtype (null segregant)

text: ovule outer integument (0DPA-NULL)

characteristic: tissue

text: Plant sample from Gossypium hirsutum


text: University of Western Brittany

text: live

text: Microbe, viral or environmental

characteristic: culture collection

text: Plant pathogenic fungus isolated from fern in Costa Rica.

characteristic: description

text: Costa Rica

text: fern

characteristic: host

text: Colletotrichum filicis

text: whole organism

characteristic: sample type

text: CBS 101611

characteristic: strain

text: Microbe sample from Colletotrichum filicis

text: culture from holotype of Colletotrichum filicis

characteristic: type-material


characteristic: External Id

text: University of Parma

characteristic: INSDC center name

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

characteristic: SRA accession

characteristic: altitude

characteristic: collection date

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: mammalia-associated habitat

characteristic: env biome

text: intestine environment

characteristic: env feature

text: feces

text: Italy

text: Capreolus capreolus

text: feces metagenome

text: MIMARKS Survey related sample from feces metagenome

characteristic: title


text: Korea University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: South Korea

characteristic: geo loc name

text: Sea water

characteristic: isolation source

text: Sphingorhabdus lutea

characteristic: organism

text: whole organism, cell monoculture

text: Microbe sample from Sphingorhabdus lutea

text: type material of Sphingorhabdus lutea

characteristic: type material


text: environmental-factory/production facility

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: SHL

characteristic: collected by

text: USA:IA

text: environmental swab sponge

text: environmental (swab or sampling):GENEPIO_0001732| environmental sponge:CURATION_0000359

characteristic: ontological term

text: Listeria monocytogenes

text: environmental

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


characteristic: External Id

text: environmental

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: SHL

characteristic: collection date

text: USA:IA

text: environmental swab

text: environmental (swab or sampling):GENEPIO_0001732

text: Listeria monocytogenes

text: environmental


text: multi-ingredient| meat

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: SHL

text: USA:IA

text: sausage

text: sausage (formed):FOODON_03315904

text: Listeria monocytogenes

text: food

characteristic: title


text: environmental-factory/production facility| environmental-factory

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: SHL

text: USA:IA

characteristic: geo loc name

text: factory swab

characteristic: isolation source

text: factory:ENVO_01000536| swab:ncit_c17627

text: Listeria monocytogenes

characteristic: organism

text: environmental


text: veterinary clinical/research, cow

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FLUFL

text: USA:FL

text: Bos taurus

characteristic: host

text: feces (Bos taurus)

text: bos taurus:NCBITAXON_9913, feces:UBERON_0001988

text: Escherichia coli

text: animal

text: Pathogen: environmental/food/other sample from Escherichia coli


text: Sir William Dunn School of Pathology, University of Oxford

characteristic: INSDC secondary accession

text: live

text: Generic

text: Lachancea kluyveri

characteristic: phase

text: wild type

characteristic: relevant genotype

text: genomic DNA from G2 cells enriched by FACS from asynchronous culture

text: CBS3082 (NCYC 543)


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Lachancea kluyveri

text: S

text: wild type

text: genomic DNA from S phase cells enriched by FACS from asynchronous culture

text: CBS3082 (NCYC 543)

characteristic: strain


text: Applied and Environmental Microbiology

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China: Maowusu

text: biological soil crusts

text: Pararhizobium arenae

text: cell culture

characteristic: sample type

text: Microbe sample from Pararhizobium arenae

text: type strain of Rhizobium arenae

characteristic: type material


text: environmental

characteristic: INSDC last update

text: live

characteristic: INSDC status

characteristic: Isolate name alias

text: Pathogen.env

characteristic: NCBI submission model

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:IA

text: environmental swab

characteristic: ontological term

text: Listeria monocytogenes

text: environmental

characteristic: source type

characteristic: title


text: clinical/research, human

characteristic: IFSAC+ Category

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: clinical/host-associated

text: FDA Contracted Laboratory

text: USA:OR

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: stool

characteristic: isolation source

text: Escherichia coli

characteristic: organism

characteristic: serotype

text: human

text: Pathogen: clinical or host-associated sample from Escherichia coli


characteristic: External Id

text: environmental

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:GA

text: environmental swab

text: Listeria monocytogenes

text: environmental

characteristic: strain


text: Jingli Cao, Cell & Developmental Biology, Weill Cornell Medical College

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: 6 month

characteristic: age

text: Danio rerio

text: zebrafish epicardial cell

text: EK

text: heart epicardium

characteristic: tissue

text: non treated control

characteristic: treatment


text: live

text: Generic

characteristic: NCBI submission package

text: 6 month

text: Danio rerio

text: zebrafish epicardial cell

text: EK

text: heart epicardium

text: Amputation 7dpa-4

characteristic: title

text: 7 days after heart apex amputation injury


text: live

text: Generic

text: 6 month

text: Danio rerio

characteristic: organism

text: zebrafish epicardial cell

text: EK

text: heart epicardium

text: Amputation 7dpa-3


text: live

text: Generic

text: 6 month

text: Danio rerio

text: zebrafish epicardial cell

text: EK

text: heart epicardium

text: Amputation 7dpa-2


text: live

text: Generic

text: 6 month

text: Danio rerio

text: zebrafish epicardial cell

text: EK

text: heart epicardium

text: Amputation 7dpa-1


text: live

text: Generic

text: 6 month

text: Danio rerio

text: zebrafish epicardial cell

text: EK

text: heart epicardium

text: Amputation 3dpa-4

text: 3 days after heart apex amputation injury


text: live

text: Generic

text: 6 month

text: Danio rerio

text: zebrafish epicardial cell

text: EK

text: heart epicardium

text: Amputation 3dpa-3


text: live

text: Generic

text: 6 month

text: Danio rerio

text: zebrafish epicardial cell

text: EK

text: heart epicardium

text: Amputation 3dpa-2


text: live

text: Generic

text: 6 month

text: Danio rerio

text: zebrafish epicardial cell

text: EK

text: heart epicardium

text: Amputation 3dpa-1


text: fish

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: fda lab id

text: Myanmar

characteristic: geo loc name

text: tilapia

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: MMMOSAM:c9e3d1d0-e183-436f-9629-9d4375bd68cd

characteristic: External Id

text: Modernising Medical Microbiology, NDM, Oxford University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: ModMedMicOxford

characteristic: collection date

text: United Kingdom: London

text: Homo sapiens

characteristic: host

text: abscess

text: Staphylococcus aureus

text: whole organism

characteristic: sample type

text: NCTC 08532

characteristic: strain

text: Staphylococcus genus type strain

text: type strain of Staphylococcus aureus

characteristic: type-material


A1-Wagad 1

text: Iowa State University

text: live

text: Plant

characteristic: NCBI submission package

characteristic: SRA accession

text: wagad

characteristic: cultivar

text: adult

characteristic: dev stage

text: USA: Ames, IA

characteristic: geo loc name

text: Gossypium herbaceum

characteristic: organism

text: leaf

characteristic: tissue

text: Plant material from A1-Wagad

characteristic: title


characteristic: External Id

text: Technion - Israel Institute of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Viral

text: Phage-resistance in the abundant marine cyanobacterium, Prochlorococcus, was found to occur frequently. However, little is known about the ability of phages to overcome this resistance. Here we investigated the ability of T7-like cyanophages to overcome resistance in Prochlorococcus.

characteristic: description

text: Lab strain

characteristic: isolate

text: Prochlorococcus sp. MED4

characteristic: lab host

text: Tiamatvirus PSSP7

text: resistance-breking mutant of Prochlorococcus phage P-SSP7


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Prochlorococcus sp. MED4-R6

characteristic: Isolation_host_ strain

text: Viral

characteristic: NCBI submission model

text: Phage-resistance in the abundant marine cyanobacterium, Prochlorococcus, was found to occur frequently. However, little is known about the ability of phages to overcome this resistance. Here we investigated the ability of T7-like cyanophages to overcome resistance in Prochlorococcus

text: Lab strain

text: Prochlorococcus sp. MED4

text: Tiamatvirus PSSP7

text: biological replicate 2

characteristic: replicate

text: Resistance-breking mutant of Prochlorococcus phage P-SSP7


text: live

text: Prochlorococcus sp. MED4-R5

text: Viral

characteristic: NCBI submission package

characteristic: SRA accession

text: Lab strain

text: Prochlorococcus sp. MED4

text: Tiamatvirus PSSP7

text: biological replicate 3


text: live

text: Prochlorococcus sp.MED4-WT

text: Viral

text: Lab strain

text: Prochlorococcus sp. MED4

text: Tiamatvirus PSSP7

characteristic: organism

text: biological replicate 1

text: Paired-control wild-type isolate of Prochlorococcus phage P-SSP7


text: live

text: Prochlorococcus sp. MED4-WT

text: Viral

text: Lab strain

text: Prochlorococcus sp. MED4

text: Tiamatvirus PSSP7

text: biological replicate 2


text: live

text: Prochlorococcus sp. MED4-WT

text: Viral

text: Lab strain

text: Prochlorococcus sp. MED4

text: Tiamatvirus PSSP7

text: biological replicate 3


text: veterinary clinical/research| cow

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: environmental/food/other

text: Pennsylvania State University | Escherichia coli Reference Center

characteristic: collected by

characteristic: collection date

text: USA:WV

characteristic: geo loc name

text: bovine

characteristic: host

text: feces (Bos taurus)

characteristic: isolation source

text: bos taurus:ncbitaxon_9913| feces:uberon_0001988

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Escherichia coli


characteristic: External Id

text: veterinary clinical/research, pig

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: USDA-FSIS

text: USA:KY

text: feces market swine (Sus scrofa)

text: feces:UBERON_0001988, market:ENVO_01000987, sus scrofa:NCBITAXON_9823, swine:FOODON_03411136

text: Escherichia coli

text: animal

characteristic: title


text: SCOPE

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: alkalinity

characteristic: altitude

characteristic: chlorophyll

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: ocean biome

characteristic: env biome

text: marine wind mixed layer

characteristic: env feature

text: ocean water

text: Pacific Ocean: North Pacific Gyre, Station ALOHA

text: 22.75 N 158 W

characteristic: lat lon

characteristic: nitro

text: marine plankton metagenome

characteristic: ph

characteristic: phaeopigments

characteristic: pressure

characteristic: salinity

characteristic: silicate

characteristic: temp

text: MIMS Environmental/Metagenome sample from marine plankton metagenome


characteristic: External Id

text: SCOPE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:6.0

text: ocean biome

text: oceanic zone

text: ocean water

characteristic: geo loc name

text: 22.75 N 158 W

text: marine plankton metagenome

characteristic: organism

characteristic: title


text: SCOPE

text: live

text: MIMS.me

characteristic: NCBI submission package

characteristic: alkalinity

characteristic: altitude

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: ocean biome

characteristic: env biome

text: mesopelagic zone

characteristic: env feature

text: ocean water

text: 22.75 N 158 W

characteristic: lat lon

characteristic: nitro

text: marine plankton metagenome

characteristic: ph


characteristic: External Id

text: SCOPE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: chlorophyll

text: Keywords: GSC:MIxS;MIMS:6.0

text: ocean biome

text: marine wind mixed layer

text: ocean water

text: 22.75 N 158 W

text: marine plankton metagenome

characteristic: phaeopigments

characteristic: pressure

characteristic: salinity

characteristic: silicate

characteristic: temp


text: SCOPE

text: live

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: alkalinity

characteristic: altitude

characteristic: collection date

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: ocean biome

characteristic: env biome

text: oceanic zone

text: ocean water

characteristic: geo loc name

text: 22.75 N 158 W

text: marine plankton metagenome

characteristic: organism

characteristic: title


characteristic: External Id

text: SCOPE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

text: Keywords: GSC:MIxS;MIMS:6.0

text: ocean biome

text: mesopelagic zone

characteristic: env feature

text: ocean water

text: 22.75 N 158 W

characteristic: lat lon

characteristic: nitro

text: marine plankton metagenome

characteristic: ph


text: SCOPE

text: live

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: alkalinity

characteristic: altitude

characteristic: chlorophyll

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:6.0

text: ocean biome

text: oceanic zone

text: ocean water

text: 22.75 N 158 W

text: marine plankton metagenome

characteristic: phaeopigments

characteristic: pressure

characteristic: salinity

characteristic: silicate

characteristic: temp


characteristic: External Id

text: Microbiology, Pusan National University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: in vitro

characteristic: condition

text: wild-type

characteristic: genotype

text: Xanthomonas oryzae pv. oryzae KACC 10331

characteristic: organism

text: oryzae

characteristic: pathovar

text: Bacterial culture, Xoo KACC10331

characteristic: strain

text: Xoo KACC10331, in vitro, rep3

characteristic: title


text: Microbiology, Pusan National University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: in vitro

text: wild-type

text: oryzae

text: Bacterial culture, Xoo KACC10331

text: Xoo KACC10331, in vitro, rep2


text: Microbiology, Pusan National University

text: live

text: Generic

text: in vitro

text: wild-type

text: oryzae

text: Bacterial culture, Xoo KACC10331

text: Xoo KACC10331, in vitro, rep1


text: Microbiology, Pusan National University

text: live

text: Generic

text: in planta

text: wild-type

text: oryzae

text: In rice, Xoo KACC10331

text: Xoo KACC10331, in planta, rep3


text: Microbiology, Pusan National University

text: live

text: Generic

text: in planta

text: wild-type

text: oryzae

text: In rice, Xoo KACC10331

text: Xoo KACC10331, in planta, rep2


text: Microbiology, Pusan National University

text: live

text: Generic

text: in planta

text: wild-type

text: oryzae

text: In rice, Xoo KACC10331

text: Xoo KACC10331, in planta, rep1


text: Public Health England

text: live

text: Pathogen.cl

text: PHE

characteristic: collected by

characteristic: collection date

text: United Kingdom: United Kingdom

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: Not available

characteristic: host disease

text: Shigella flexneri

characteristic: sequence type

text: Pathogen: clinical or host-associated sample from Shigella flexneri


characteristic: External Id

text: Institut Pasteur

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Viral

text: Escherichia coli

text: Tequatrovirus T4

text: Forward

text: Viral sample from Tequatrovirus T4


text: Institut Pasteur

text: live

characteristic: INSDC status

text: Viral

text: Escherichia coli

text: Tequatrovirus T4

characteristic: organism

text: Reverse

text: Viral sample from Tequatrovirus T4


text: Institut Pasteur

text: live

text: Viral

text: Escherichia coli

text: Lambdavirus lambda

text: Forward

text: Viral sample from Lambdavirus lambda

characteristic: title


text: Institut Pasteur

text: live

text: Viral

characteristic: NCBI submission model

text: Escherichia coli

text: Lambdavirus lambda

text: Reverse

text: Viral sample from Lambdavirus lambda


text: Institut Pasteur

text: live

text: Viral

characteristic: NCBI submission package

text: Escherichia coli

text: Muvirus mu

text: Forward

text: Viral sample from Muvirus mu


text: Institut Pasteur

text: live

text: Viral

text: Escherichia coli

text: Muvirus mu

text: Reverse

text: Viral sample from Muvirus mu


text: Institut Pasteur

text: live

text: Viral

characteristic: SRA accession

text: Escherichia coli

text: Punavirus P1

text: Forward

text: Viral sample from Punavirus P1


text: Institut Pasteur

text: live

text: Viral

text: Escherichia coli

text: Punavirus P1

text: Reverse

text: Viral sample from Punavirus P1


text: multi-ingredient

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FLAG

characteristic: collected by

text: USA:FL

text: sandwich

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

text: food

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


characteristic: External Id

text: sub-tropical fruit

text: live

text: Pathogen.env

text: environmental/food/other

text: FLAG

characteristic: collection date

text: USA:FL

characteristic: geo loc name

text: large green avocado

text: avocado (whole, raw):FOODON_03305236

text: Salmonella enterica

text: food

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: dairy

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: Institute for Food Safety and Health

characteristic: culture collection

text: USA:CA

text: CFSAN051393; NRRL B-2354-B-2354

text: cheese

text: cheese food product:FOODON_00001013

text: Enterococcus faecium

text: food

text: ATCC 8459

text: Pathogen: environmental/food/other sample from Enterococcus faecium


text: University of Queensland

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: USA

text: H99 lab reference strain

characteristic: isolate

text: Laboratory subculture

text: Cryptococcus neoformans

characteristic: organism

text: Pure culture

characteristic: sample type

text: grubii

text: Microbe sample from Cryptococcus neoformans

characteristic: title


text: University of Queensland

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: USA

text: H99 lab reference strain LA

text: Laboratory subculture

characteristic: isolation source

text: Cryptococcus neoformans

text: Pure culture

text: grubii


characteristic: External Id

text: University of Queensland

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: USA

text: H99 lab reference strain LB

text: Laboratory subculture

text: Cryptococcus neoformans

text: Pure culture

text: grubii

characteristic: strain


text: University of Queensland

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: USA

characteristic: geo loc name

text: H99 lab reference strain LD

text: Laboratory subculture

text: Cryptococcus neoformans

text: Pure culture

text: grubii


text: University of Queensland

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: USA

text: H99 lab reference strain LE

text: Laboratory subculture

text: Cryptococcus neoformans

text: Pure culture

text: grubii


text: University of Queensland

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

text: USA

text: H99 lab reference strain LF

text: Laboratory subculture

text: Cryptococcus neoformans

text: Pure culture

text: grubii


text: University of Queensland

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: USA

text: H99 lab reference strain LG

text: Laboratory subculture

text: Cryptococcus neoformans

text: Pure culture

text: grubii


text: University of Queensland

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: USA

text: H99 Eunuch

text: Laboratory subculture

text: Cryptococcus neoformans

text: Pure culture

text: grubii


text: University of Queensland

text: live

text: Microbe, viral or environmental

text: USA

text: H99 lab reference strain F

characteristic: isolate

text: Laboratory subculture

text: Cryptococcus neoformans

text: Pure culture

text: grubii


text: University of Queensland

text: live

text: Microbe, viral or environmental

text: USA

text: H99 CMO18

text: Laboratory subculture

text: Cryptococcus neoformans

characteristic: organism

text: Pure culture

text: grubii


text: University of Queensland

text: live

text: Microbe, viral or environmental

text: USA

text: Congenic strain a

text: Laboratory subculture

text: Cryptococcus neoformans

text: Pure culture

characteristic: sample type

text: grubii


text: University of Queensland

text: live

text: Microbe, viral or environmental

text: USA

text: Congenic strain alpha

text: Laboratory subculture

text: Cryptococcus neoformans

text: Pure culture

text: grubii

characteristic: title


text: University of Manitoba

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: Phosphorus-solubilizing bacterium

characteristic: description

text: Canada: winnipeg, manitoba

text: Agriculture waste

text: Stutzerimonas stutzeri

text: pure culture

text: Microbe sample from Stutzerimonas stutzeri


Nitrososphaeraceae archaeon UBA536

text: University of Queensland

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: CLC de novo assembler

characteristic: assembly method

text: Uncultivated genome recovered from an assembly of the SRX710573 metagenome.

text: TRUE

characteristic: environmental sample

characteristic: genome coverage

text: Canada: Axel Heiberg Island,Nunavut

text: soil

characteristic: isolation-source

text: BWA (BWA-MEM)

text: soil metagenome

characteristic: metagenome source

text: TRUE

characteristic: metagenomic

text: Candidatus Nitrosopolaris nunavutensis

text: CheckM

text: metagenomic assembly

text: Genome binned from sequencing reads available in SRX710573

text: Uncultivated Nitrososphaeraceae archaeon UBA536 genome recovered from SRX710573


Nitrososphaeraceae archaeon UBA466

characteristic: External Id

text: University of Queensland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: CLC de novo assembler

text: Uncultivated genome recovered from an assembly of the SRX710628 metagenome.

text: TRUE

text: Canada: Axel Heiberg Island,Nunavut

characteristic: geo loc name

text: soil

text: BWA (BWA-MEM)

text: soil metagenome

text: TRUE

text: Candidatus Nitrosopolaris nunavutensis

text: CheckM

text: metagenomic assembly

text: Genome binned from sequencing reads available in SRX710628

text: Uncultivated Nitrososphaeraceae archaeon UBA466 genome recovered from SRX710628


Nitrososphaeraceae archaeon UBA347

text: University of Queensland

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: CLC de novo assembler

text: Uncultivated genome recovered from an assembly of the SRX710570 metagenome.

text: TRUE

text: Canada: Axel Heiberg Island,Nunavut

characteristic: isolate

text: soil

text: BWA (BWA-MEM)

text: soil metagenome

text: TRUE

text: Candidatus Nitrosopolaris nunavutensis

characteristic: organism

text: CheckM

text: metagenomic assembly

text: Genome binned from sequencing reads available in SRX710570

text: Uncultivated Nitrososphaeraceae archaeon UBA347 genome recovered from SRX710570


Nitrososphaeraceae archaeon UBA348

text: University of Queensland

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: CLC de novo assembler

text: Uncultivated genome recovered from an assembly of the SRX710579 metagenome.

characteristic: description

text: TRUE

text: Canada: Axel Heiberg Island,Nunavut

text: soil

text: BWA (BWA-MEM)

text: soil metagenome

text: TRUE

text: Candidatus Nitrosopolaris nunavutensis

text: CheckM

text: metagenomic assembly

characteristic: sample type

text: Genome binned from sequencing reads available in SRX710579

text: Uncultivated Nitrososphaeraceae archaeon UBA348 genome recovered from SRX710579

characteristic: title


Nitrososphaeraceae archaeon UBA273

text: University of Queensland

text: live

text: Microbe, viral or environmental

text: CLC de novo assembler

characteristic: assembly method

text: Uncultivated genome recovered from an assembly of the SRX710580 metagenome.

text: TRUE

characteristic: environmental sample

characteristic: genome coverage

text: Canada: Axel Heiberg Island,Nunavut

text: soil

characteristic: isolation-source

text: BWA (BWA-MEM)

text: soil metagenome

characteristic: metagenome source

text: TRUE

text: Candidatus Nitrosopolaris nunavutensis

text: CheckM

text: metagenomic assembly

text: Genome binned from sequencing reads available in SRX710580

text: Uncultivated Nitrososphaeraceae archaeon UBA273 genome recovered from SRX710580


Nitrososphaeraceae archaeon UBA272

characteristic: External Id

text: University of Queensland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: CLC de novo assembler

text: Uncultivated genome recovered from an assembly of the SRX710583 metagenome.

text: TRUE

text: Canada: Axel Heiberg Island,Nunavut

text: soil

text: BWA (BWA-MEM)

text: soil metagenome

text: TRUE

characteristic: metagenomic

text: Candidatus Nitrosopolaris nunavutensis

text: CheckM

text: metagenomic assembly

text: Genome binned from sequencing reads available in SRX710583

text: Uncultivated Nitrososphaeraceae archaeon UBA272 genome recovered from SRX710583


text: UC San Diego

text: live

characteristic: INSDC status

text: Viral

characteristic: NCBI submission model

characteristic: collection date

text: USA: East Lansing MI

characteristic: geo loc name

text: phage evolved on OmpF- host

characteristic: isolate

text: Lab experiment

characteristic: isolation source

text: E.coli KEIO JW0912

characteristic: lab host

text: Lambdavirus lambda

characteristic: strain

text: 18O lambda phage evolved on OmpF- host


text: UC San Diego

characteristic: INSDC secondary accession

text: live

text: Viral

characteristic: NCBI submission package

characteristic: SRA accession

text: USA: East Lansing MI

text: phage evolved on LamB- host

text: Lab experiment

text: E.coli KEIO JW3996

text: Lambdavirus lambda

characteristic: organism

text: Viral sample from Lambdavirus lambda

characteristic: title


characteristic: External Id

text: UC San Diego

characteristic: INSDC center name

text: live

text: Viral

text: USA: East Lansing MI

text: phage evolved on OmpF- host

text: Lab experiment

text: E.coli KEIO JW0912

text: Lambdavirus lambda

text: Viral sample from Lambdavirus lambda


text: environmental-water

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: Isolate name alias

text: Pathogen.env

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:CA

text: water

characteristic: ontological term

text: Salmonella enterica

text: enteritidis

characteristic: serovar

text: environmental

characteristic: source type

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: environmental-water

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: USA:CA

characteristic: geo loc name

text: well water

characteristic: isolation source

text: water well:ENVO_01000002

text: Salmonella enterica

text: enteritidis

text: environmental


text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:SC

text: Strainer

text: Salmonella enterica

text: enteritidis

characteristic: strain


text: seeded vegetables (solanaceous), other (flavoring or seasoning)

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: fda lab id

text: India

text: chili powder

text: chili powder:FOODON_03302030

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

text: food

characteristic: title


characteristic: External Id

text: fish

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: Guyana

text: frozen fillet bangamary fish

text: fish fillet frozen:FOODON_03305143, king weakfish:FOODON_00002896

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

text: food


MIC HOM 57

text: Blokhina Research Institute of Epidemiology and Microbiology, Nizhny Novgorod, Russia

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: SRA accession

characteristic: collection date

text: isolate obtained from scrapings of the urogenital tract of women with inflammatory diseases of the reproductive organs

characteristic: description

text: Russia: Nizhny Novgorod

text: Homo sapiens

characteristic: host

text: urogenital tract of women with infectious-inflammatory diseases of the reproductive organs

text: Metamycoplasma hominis

text: monoculture

characteristic: sample type

text: Microbe sample from Metamycoplasma hominis


MIC HOM 45

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: Russia: Nizhny Novgorod

characteristic: geo loc name

text: Homo sapiens

characteristic: isolation source

text: Metamycoplasma hominis

characteristic: organism

text: monoculture

characteristic: strain


characteristic: External Id

text: melon fruit

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: Ohio Agricultural R&D Center

characteristic: collected by

text: USA:OH

text: CFSAN057054, 3-4-A-F-1

text: cantaloupe

text: cantaloupe fruit food product:foodon_00001288

text: Escherichia coli

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Escherichia coli

characteristic: title


text: environmental-factory/production facility

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Ohio Agricultural R&D Center

text: USA:OH

text: CFSAN057053, 3-5-D-S-2

text: soil and surface debris

text: surface soil:ENVO_02000059

characteristic: ontological term

text: Escherichia coli

text: environmental


text: live

text: Pathogen.env

text: environmental/food/other

text: Ohio Agricultural R&D Center

characteristic: collection date

text: USA:OH

text: CFSAN057052, 1-1-E-S-1

text: soil and surface debris

text: surface soil:ENVO_02000059

text: Escherichia coli

text: environmental


text: crustaceans

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057051, 573 699 EMB2A

text: shrimp

text: Escherichia coli

text: food


text: crustaceans

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

characteristic: geo loc name

text: CFSAN057050, 573 699 EMB2A

text: shrimp

text: Escherichia coli

text: food


text: crustaceans

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057049, 573 699 EMB1A

text: shrimp

characteristic: isolation source

text: Escherichia coli

text: food


text: crustaceans

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057048, 573 699 EMB1A

text: shrimp

text: Escherichia coli

characteristic: organism

text: food


text: crustaceans

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057047, 573 699 MAC1A

text: shrimp

text: Escherichia coli

text: food

characteristic: strain


characteristic: External Id

text: crustaceans

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057046, 573 699 MAC1A

text: shrimp

text: Escherichia coli

text: food


text: crustaceans

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057045, 573 812 EMB2A

text: shrimp

text: Escherichia coli

text: food


text: crustaceans

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057044, 573 812 EMB2A

text: shrimp

text: Escherichia coli

text: food


text: crustaceans

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

text: USA:MA

text: CFSAN057043, 573 812 MAC2A

text: shrimp

text: Escherichia coli

text: food


text: crustaceans

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057042, 573 812 MAC2A

text: shrimp

text: Escherichia coli

text: food

characteristic: source type


text: crustaceans

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057041, 573 683 EMB2A

text: shrimp

text: Escherichia coli

text: food

characteristic: title


text: crustaceans

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057040, 573 683 EMB2A

text: shrimp

text: Escherichia coli

text: food


text: crustaceans

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057039, 573 683 MAC2A

text: shrimp

text: Escherichia coli

text: food


text: crustaceans

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057038, 573 683 MAC A

text: shrimp

text: Escherichia coli

text: food


text: crustaceans

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057037, 573 675 EMB1A

text: shrimp

text: Escherichia coli

text: food


text: crustaceans

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MA

text: CFSAN057036, 573 675 EMB1A

text: shrimp

characteristic: ontological term

text: Escherichia coli

text: food


text: veterinary clinical/research, cow

text: live

text: Pathogen.env

text: environmental/food/other

text: Central Veterinary Laboratory, England

characteristic: collection date

text: United Kingdom

text: Bos taurus

characteristic: host

text: CFSAN057031, B44

text: cow feces (Bos taurus)

text: bos taurus:NCBITAXON_9913, cattle:FOODON_03411161, feces:UBERON_0001988

text: Escherichia coli

text: animal


text: veterinary clinical/research, cow

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: Central Veterinary Laboratory, England

text: United Kingdom

characteristic: geo loc name

text: Bos taurus

text: CFSAN057030, B41

text: cow feces (Bos taurus)

text: Escherichia coli

text: animal


text: clinical/research| human

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Michigan State University U STEC

text: USA:MN

text: Homo sapiens

text: CFSAN057034;I2005003960 #1

text: feces

characteristic: isolation source

text: Escherichia albertii

characteristic: organism

text: human

text: Pathogen: clinical or host-associated sample from Escherichia albertii


characteristic: External Id

text: clinical/research| human

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Michigan State University U STEC

text: United Kingdom

text: Homo sapiens

text: CFSAN057032, E851/71

text: feces

text: Escherichia coli

text: human

characteristic: strain

text: Pathogen: clinical or host-associated sample from Escherichia coli


text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Michigan State University U STEC

text: USA:MN

text: Homo sapiens

text: CFSAN057035;I2005002880 #36

text: feces

text: Escherichia albertii

text: human


text: clinical/research| human

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Michigan State University U STEC

characteristic: collected by

text: Bangladesh

text: Homo sapiens

text: CFSAN057033;Albert 19982

text: feces

text: Escherichia albertii

text: human

characteristic: source type


text: clinical/research| human

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Homo sapiens

text: CFSAN057093, 5027human7

text: feces

text: Escherichia coli

text: human

characteristic: title


text: clinical/research| human

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.cl

text: clinical/host-associated

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Homo sapiens

text: CFSAN057092, 5026human3

text: feces

text: Escherichia coli

text: human


text: clinical/research| human

text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: clinical/host-associated

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Homo sapiens

text: CFSAN057091, 3693human1

text: feces

characteristic: ontological term

text: Escherichia coli

text: human


text: veterinary clinical/research

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

characteristic: collection date

text: Mexico

text: CFSAN057090, 2382tapir6

text: feces

text: Escherichia coli

text: animal

text: Tapirus bairdii

characteristic: specific host


text: veterinary clinical/research, companion animal

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

characteristic: geo loc name

text: Canis lupus familiaris

characteristic: host

text: CFSAN057062, 2dog9

text: feces (Canis lupus familiaris)

text: canis lupus familiaris:NCBITAXON_9615, feces:UBERON_0001988

text: Escherichia coli

text: animal


characteristic: External Id

text: clinical/research| human

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Homo sapiens

text: CFSAN057066, 45human4

text: feces

characteristic: isolation source

text: Escherichia coli

characteristic: organism

text: human


text: veterinary clinical/research, other animal

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: feces (Tadarida brasiliensis)

text: Escherichia coli

text: animal

characteristic: strain


characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

characteristic: collected by

text: Mexico

text: Tadarida brasiliensis

text: CFSAN057064, 33bat1

text: feces (Tadarida brasiliensis)

text: Escherichia coli

text: animal

characteristic: source type


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: feces (Dermatemys mawii)

text: Escherichia coli

text: animal

characteristic: title


text: veterinary clinical/research

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

characteristic: collection date

text: Mexico

text: CFSAN057067, 55bird8

text: feces

characteristic: ontological term

text: Escherichia coli

text: animal

text: Corvus corone


text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

characteristic: geo loc name

text: Mus musculus

text: CFSAN057070, 78mice4

text: feces (Mus musculus)

text: feces:UBERON_0001988, mus musculus:NCBITAXON_10090

text: Escherichia coli

text: animal


characteristic: External Id

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: feces (Mus musculus)

text: Escherichia coli

text: animal


CVM 22644

text: CVM 22644

characteristic: FDA CVM ID

text: FDA

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: SRA accession

characteristic: culture-collection

text: USA: Snake River, WA

text: Oncorynchus tshawytscha

characteristic: isolation source

text: ATCC 23463

text: Pathogen: environmental/food/other sample from Flavobacterium columnare NBRC 100251 = ATCC 23463

text: type strain of Flexibacter columnaris

characteristic: type material


CVM WGS0041

text: CVM AQ-17

text: FDA

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: USA: Snake River, WA

text: Oncorynchus tshawytscha

text: Flavobacterium columnare NBRC 100251 = ATCC 23463

characteristic: organism

text: ATCC 23463

characteristic: strain

text: type strain of Flexibacter columnaris


characteristic: IFSAC+ Category

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

characteristic: collected by

text: Mexico

text: Oryctolagus cuniculus

characteristic: host

text: CFSAN057071, 82rabbit9

text: feces (Oryctolagus cuniculus)

text: feces:UBERON_0001988, oryctolagus cuniculus:NCBITAXON_9986

text: Escherichia coli

text: animal

characteristic: source type

characteristic: title


characteristic: External Id

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

characteristic: collection date

text: Mexico

characteristic: geo loc name

text: Papio papio

text: CFSAN057088, 2274baboon1

text: feces (Papio papio)

text: Escherichia coli

text: animal


text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Mus musculus

text: CFSAN057089, 2314austr.mice1

text: feces (Mus musculus)

characteristic: isolation source

characteristic: ontological term

text: Escherichia coli

text: animal


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Tadarida brasiliensis

text: CFSAN057082, 1684bat1

text: feces (Tadarida brasiliensis)

text: Escherichia coli

text: animal


text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Canis latrans

text: CFSAN057081, 830cayote45

text: feces (Canis latran)

text: canis:NCBITAXON_9611, feces:UBERON_0001988

text: Escherichia coli

characteristic: organism

text: animal

characteristic: strain


text: clinical/research| human

characteristic: IFSAC+ Category

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Homo sapiens

text: CFSAN057087, 2165human8

text: feces

text: Escherichia coli

text: human


text: veterinary clinical/research, pig

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

characteristic: collected by

text: Mexico

text: Tayassu pecari

text: CFSAN057086, 2055pecari6

text: feces (Tayassu pecari)

text: feces:UBERON_0001988, pecari:NCBITAXON_35609

text: Escherichia coli

text: animal


text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Ovis aries

characteristic: host

text: CFSAN057085, 1967sheep1

text: feces (Ovis aries)

text: feces:UBERON_0001988, ovis aries:NCBITAXON_9940

text: Escherichia coli

text: animal

characteristic: source type


characteristic: External Id

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Tamandua mexicana

text: CFSAN057084, 1744anteater7

text: feces (Tamandua mexicana)

text: feces:UBERON_0001988, tamandua mexicana:NCBITAXON_9351

text: Escherichia coli

text: animal

characteristic: title


text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Canis latrans

text: CFSAN057075, 273cayote1

text: feces (Canis latran)

text: Escherichia coli

text: animal

text: Pathogen: environmental/food/other sample from Escherichia coli


text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

characteristic: collection date

text: Mexico

characteristic: geo loc name

text: Canis latrans

text: CFSAN057080, 825cayote4

text: feces (Canis latran)

text: Escherichia coli

text: animal


text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Mus musculus

text: CFSAN057079, 820mice1

text: feces (Mus musculus)

characteristic: isolation source

characteristic: ontological term

text: Escherichia coli

text: animal


text: veterinary clinical/research

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: CFSAN057078, 815weasel2

text: feces

text: Escherichia coli

text: animal

text: Mustela frenata

characteristic: specific host


characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Mus musculus

text: CFSAN057076, 288mice1

text: feces (Mus musculus)

text: Escherichia coli

characteristic: organism

text: animal

characteristic: strain


text: veterinary clinical/research

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

characteristic: collected by

text: Mexico

text: CFSAN057074, 270jagar2

text: feces

text: Escherichia coli

text: animal

text: Panthera onca


characteristic: External Id

text: live

text: Pathogen.env

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Mus musculus

characteristic: host

text: CFSAN057072, 95mice2

text: feces (Mus musculus)

text: Escherichia coli

text: animal

characteristic: source type


text: veterinary clinical/research, wild animal

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Universidad Nacional Autonoma de Mexico

text: Mexico

text: Mus musculus

text: CFSAN057063, 20mice5

text: feces (Mus musculus)

text: Escherichia coli

text: animal

characteristic: title


text: clinical/research, human

text: live

text: Pathogen.cl

text: clinical/host-associated

text: CDC

characteristic: collection date

text: USA

characteristic: geo loc name

text: Homo sapiens

text: CFSAN057056, 3004-89

text: Escherichia coli

text: human


text: clinical/research, human

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: clinical/host-associated

text: CDC

text: USA

text: Homo sapiens

text: CFSAN057055, 3003-89

characteristic: ontological term

text: Escherichia coli

text: human


text: clinical/research| human

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: clinical/host-associated

text: University of Minnesota

text: USA:WA

text: Homo sapiens

text: CFSAN057061, H2-2438

text: blood

characteristic: isolation source

text: Escherichia coli

text: human


text: clinical/research, human

characteristic: IFSAC+ Category

text: live

text: Pathogen.cl

text: clinical/host-associated

text: CDC

text: USA

text: Homo sapiens

text: CFSAN057060, 10099/G6001

text: Escherichia coli

characteristic: organism

text: human


text: clinical/research, human

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: clinical/host-associated

text: CDC

text: USA

text: Homo sapiens

text: CFSAN057059, G5933

text: Escherichia coli

text: human

characteristic: strain


text: clinical/research, human

text: live

characteristic: INSDC status

text: Pathogen.cl

text: clinical/host-associated

text: CDC

characteristic: collected by

text: USA

text: Homo sapiens

text: CFSAN057058, 3006-89

text: Escherichia coli

text: human


characteristic: External Id

text: clinical/research, human

text: live

text: Pathogen.cl

text: clinical/host-associated

text: CDC

text: USA

text: Homo sapiens

characteristic: host

text: CFSAN057057, 3005-89

text: Escherichia coli

text: human


text: Duke University School of Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: GF

characteristic: condition

text: Mutant (hnf4a-/-)

characteristic: genotype

text: Danio rerio

text: zebrafish digestive tracts

text: Larval digestive tract

characteristic: tissue


text: Duke University School of Medicine

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission package

text: CV

text: WT (hnf4a+/+)

text: Danio rerio

text: zebrafish digestive tracts

text: Larval digestive tract

characteristic: title


text: Duke University School of Medicine

characteristic: INSDC first public

text: live

text: Generic

text: GF

text: WT (hnf4a+/+)

text: Danio rerio

text: zebrafish digestive tracts

text: Larval digestive tract


text: Duke University School of Medicine

text: live

text: Generic

text: CV

text: Mutant (hnf4a-/-)

text: Danio rerio

characteristic: organism

text: zebrafish digestive tracts

text: Larval digestive tract