King Quail

text: Shaanxi Normal University

characteristic: INSDC last update

text: live

text: MIGS.eu

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: China

characteristic: ecotype

text: subtropical woodland biome

characteristic: env biome

characteristic: env feature

text: woodland

characteristic: estimated size

text: China: Wuyishan County

characteristic: geo loc name

text: Adult male

text: 27.67 N 117.95 E

characteristic: lat lon

text: Excalfactoria chinensis

text: diploid

characteristic: ploidy

text: eukaryote: exual

characteristic: propagation

text: Genome sequence of Coturnix chinensis


status: PUBLIC

characteristic: External Id

text: Duke University School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Jejunal intestinal epithelial cells

tag: attribute

characteristic: cell type

text: H3K4me1 (Abcam ab8895)

characteristic: chip antibody

text: CV

characteristic: condition

text: Mus musculus

characteristic: organism

text: Jejunal intestinal epithelial cells

characteristic: strain

characteristic: title


text: Duke University School of Medicine

characteristic: INSDC last update

text: live

text: Generic

text: Jejunal intestinal epithelial cells

text: CV

text: Mus musculus

text: Jejunal intestinal epithelial cells


text: Duke University School of Medicine

text: live

text: Generic

text: Jejunal intestinal epithelial cells

text: H3K4me1 (Abcam ab8895)

text: GF

text: Mus musculus

text: Jejunal intestinal epithelial cells


text: Duke University School of Medicine

text: live

text: Generic

text: Jejunal intestinal epithelial cells

text: H3K27ac (Abcam ab4729)

text: CV

text: Mus musculus

text: Jejunal intestinal epithelial cells


text: Duke University School of Medicine

text: live

text: Generic

text: Jejunal intestinal epithelial cells

text: H3K27ac (Abcam ab4729)

text: GF

text: Mus musculus

text: Jejunal intestinal epithelial cells


text: Duke University School of Medicine

text: live

text: Generic

text: Jejunal intestinal epithelial cells

text: GF

text: Mus musculus

text: Jejunal intestinal epithelial cells


text: Duke University School of Medicine

text: live

text: Generic

text: Jejunal intestinal epithelial cells

text: Hnf4g (Santa Cruz sc-6558X)

text: CV

text: Mus musculus

text: Jejunal intestinal epithelial cells


text: Duke University School of Medicine

text: live

text: Generic

text: Jejunal intestinal epithelial cells

text: Hnf4g (Santa Cruz sc-6558X)

text: GF

text: Mus musculus

text: Jejunal intestinal epithelial cells


text: Duke University School of Medicine

text: live

text: Generic

text: Jejunal intestinal epithelial cells

text: Hnf4a (Abcam ab41898)

text: CV

text: Mus musculus

text: Jejunal intestinal epithelial cells


text: Duke University School of Medicine

text: live

text: Generic

text: Jejunal intestinal epithelial cells

text: Hnf4a (Abcam ab41898)

text: GF

text: Mus musculus

text: Jejunal intestinal epithelial cells


text: Zhejiang University

text: live

text: Microbe, viral or environmental

characteristic: collection date

characteristic: depth

text: This study presented the genome sequence of Mesorhizobium sp. B7.

characteristic: description

text: China: South China Sea

characteristic: geo loc name

text: seawater

characteristic: isolation source

text: Aquibium oceanicum

text: water sample

characteristic: sample type

text: Microbe sample from Mesorhizobium sp. B7

text: type strain of Mesorhizobium oceanicum

characteristic: type material


characteristic: External Id

text: University of Melbourne

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: Oxford University Clinical Research Unit

characteristic: collected by

text: Viet Nam: Ho Chi Minh City

text: Homo sapiens

characteristic: host

text: tuberculosis

characteristic: host disease

characteristic: isolate

text: sputum

text: 10.82 N 106.63 E

characteristic: lat lon

text: Mycobacterium tuberculosis

text: Pathogen: clinical or host-associated sample from Mycobacterium tuberculosis


E. coli M15-4

text: Universidad Autonoma de Sinaloa

characteristic: INSDC last update

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: Facultad de Ciencias Quimico Biologicas

characteristic: collection date

text: Mexico: Culiacan, Sinaloa

text: Homo sapiens

text: 5 years old

characteristic: host age

text: Diarrhea disease

text: Child

text: Recovery

text: stool

text: 24.8265 N 107.3826 W

text: Escherichia coli

characteristic: organism

characteristic: strain

text: Pathogen: clinical or host-associated sample from Escherichia coli

characteristic: title


characteristic: External Id

text: Korea Advanced Institute of Science and Technology

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: 150 m

characteristic: altitude

text: Robert A. Sanford

characteristic: biomaterial provider

text: University of Illinois Urbana-Champaign

text: USA: Havana, Illinois

characteristic: geo loc name

text: dichlorophenol enrichment culture inoculated with agricultural soil

characteristic: isolation source

text: 40.29603434 N 89.94401693 W

text: Stutzerimonas degradans

text: single cell

characteristic: sample type

text: Microbe sample from Stutzerimonas degradans


text: University of Sassari

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: University of Sassari

characteristic: collected by

text: Italy: Sassari

text: Homo sapiens

characteristic: host

text: central venous catheter

text: 40.7258600 N 8.5555200 E

characteristic: lat lon

text: Enterococcus faecium

text: Pathogen: clinical or host-associated sample from Enterococcus faecium


text: University of Sassari

characteristic: INSDC last update

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: University of Sassari

characteristic: collection date

text: Italy: Sassari

text: Homo sapiens

text: Liq. fem.

text: 40.7258600 N 8.5555200 E

text: Enterococcus faecium


text: University of Sassari

text: live

text: Pathogen.cl

text: University of Sassari

text: Italy: Sassari

text: Homo sapiens

text: T. fem

text: 40.7258600 N 8.5555200 E

text: Enterococcus faecium

characteristic: organism

characteristic: strain

characteristic: title


characteristic: External Id

text: University of Sassari

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: University of Sassari

text: Italy: Sassari

text: Homo sapiens

text: emo

text: 40.7258600 N 8.5555200 E

text: Enterococcus faecium


text: College of Life Sciences, Nanjing Normal University

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: Oebiotech

text: Homo sapiens

text: pulmonary aspergillus

characteristic: host disease

text: soil and air

text: Aspergillus fumigatus

text: Pathogen: clinical or host-associated sample from Aspergillus fumigatus


IMV 00236

text: Jet Propulsion Laboratory, California Institute of Technology

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Ukraine

characteristic: geo loc name

text: wall surface, Unit-4, Chernobyl Nuclear Power Plant

characteristic: isolation source

text: Byssochlamys sp. IMV 00236

text: Wipes

characteristic: sample type

text: IMV 00236

text: Microbe sample from Byssochlamys sp. IMV 00236


text: mollusks (bi-valve)

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA

characteristic: collected by

text: Whole genome sequencing of cultured Vibrio parahaemolyticus

characteristic: description

text: USA

text: oyster

characteristic: ontological term

text: Vibrio parahaemolyticus

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Vibrio parahaemolyticus


text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

characteristic: collection date

characteristic: fda lab id

text: Bangladesh

text: BACHA(W)

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

characteristic: strain

text: Pathogen: environmental/food/other sample from Salmonella enterica

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: FDA

text: USA:NY

characteristic: geo loc name

text: environmental

characteristic: isolation source

text: Listeria monocytogenes

text: GenomeTrakr

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: grains

characteristic: IFSAC+ Category

characteristic: INSDC last update

text: live

characteristic: Isolate name alias

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA Contracted Laboratory

text: USA:NE

text: wheat

characteristic: ontological term

text: Salmonella enterica

text: enteritidis

characteristic: serovar

text: food

characteristic: source type


text: 28369261; 33659219

text: University of Melbourne

text: live

text: AUS

text: Pathogen.cl

characteristic: NCBI submission package

text: University of Melbourne

characteristic: collected by

characteristic: collection date

text: Klebsiella

characteristic: genus

text: Australia: Melbourne

text: Homo sapiens

characteristic: host

text: carriage

characteristic: host disease

characteristic: isolate

text: rectal swab

text: gastrointestinal system

text: 37.8457 S 144.9821 E

characteristic: lat lon

text: Klebsiella pneumoniae

characteristic: organism

characteristic: strain

text: Pathogen: clinical or host-associated sample from Klebsiella pneumoniae

type: AMR curated data - CABBAGE

value: piperacillin-tazobactam

value: CLSI

value: broth dilution

value: Vitek

value: intermediate

value: Klebsiella pneumoniae

value: pentizidone

value: tobramycin

value: gentamicin

value: susceptible

value: amikacin

value: ticarcillin-clavulanic acid

value: trimethoprim-sulfamethoxazole

value: resistant

value: ampicillin

value: cefazolin

value: ceftazidime

value: nitrofurantoin

value: ceftriaxone


text: 28369261; 33659219

characteristic: External Id

text: University of Melbourne

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: AUS

text: Pathogen.cl

characteristic: SRA accession

text: University of Melbourne

text: Klebsiella

text: Australia: Melbourne

characteristic: geo loc name

text: Homo sapiens

text: pneumonia

text: BAL

characteristic: isolation source

text: respiratory tract

text: 37.8457 S 144.9821 E

text: Klebsiella pneumoniae

characteristic: title

value: cefoxitin

value: CLSI

value: broth dilution

value: trimethoprim

value: ciprofloxacin

value: amoxicillin-clavulanic acid

value: norfloxacin


text: 29340588; 33659219

text: University of Melbourne

characteristic: INSDC last update

text: live

text: AUS

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: University of Melbourne

characteristic: collected by

characteristic: collection date

text: Klebsiella

text: Australia: Melbourne

text: Homo sapiens

text: pneumonia

text: BAL

text: respiratory tract

text: 37.8457 S 144.9821 E

text: Klebsiella pneumoniae

value: cefepime

value: Vitek

value: Klebsiella pneumoniae

value: pentizidone

value: gentamicin

value: susceptible

value: tobramycin

value: piperacillin-tazobactam


text: 28369261; 33659219

text: University of Melbourne

text: live

text: AUS

text: Pathogen.cl

text: University of Melbourne

text: Klebsiella

characteristic: genus

text: Australia: Melbourne

text: Homo sapiens

characteristic: host

characteristic: isolate

text: wound

text: skin or soft tissue

text: 37.8457 S 144.9821 E

characteristic: lat lon

text: Klebsiella pneumoniae

value: resistant

value: meropenem

value: trimethoprim-sulfamethoxazole

value: ampicillin

value: ceftazidime

value: amikacin


characteristic: External Id

text: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory

characteristic: INSDC center name

text: live

text: Viral

text: vB_BsuM-Goe2 a lytic Bacillus subtilis virus isolate from sewage

characteristic: description

text: Germany: Goettingen

text: sewage

text: Bacillus subtilis

characteristic: lab host

text: Bacillus phage vB_BsuM-Goe2

characteristic: organism

text: Bacillus subtilis virus vB_BsuM-Goe2


characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Viral

text: vB_BsuM-Goe3 a lytic Bacillus subtilis virus isolate from sewage

text: Germany: Goettingen

characteristic: geo loc name

text: sewage

text: Bacillus subtilis

text: Grisebachstrassevirus goe3

text: Bacillus subtilis virus vB_BsuM-Goe3


text: Yale University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Viral

characteristic: SRA accession

text: Paul Turner

characteristic: biomaterial provider

text: Beth Williams

text: This is an evolved population of phage M13 after 20 passages on E. coli as part of a larger study. The IC6 refers to strain C6 from experiment I.

text: USA

text: laboratory

characteristic: isolation source

text: Esherichia coli CSH22

text: Inovirus M13

text: 20 serial transfers in a plate reader

text: 1.2 mL of infected bacteria

characteristic: temp

text: Evolved population of Phage M13, IC6.20

characteristic: title


text: Yale University

text: live

text: Viral

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Paul Turner

text: Beth Williams

characteristic: collected by

characteristic: collection date

text: This is an evolved population of phage M13 after 20 passages on E. coli as part of a larger study. The IC10 refers to strain C10 from experiment I.

text: USA

characteristic: isolate

text: laboratory

text: Esherichia coli CSH22

text: Inovirus M13

text: 20 serial transfers in a plate reader

text: 1.2 mL of infected bacteria

text: Evolved population of Phage M13, IC10.20


characteristic: External Id

text: Yale University

characteristic: INSDC center name

text: live

text: Viral

text: Paul Turner

text: Beth Williams

text: This is an evolved population of phage M13 after 20 passages on E. coli as part of a larger study. The ID2 refers to strain D2 from experiment I.

characteristic: description

text: USA

text: laboratory

text: Esherichia coli CSH22

characteristic: lab host

text: Inovirus M13

text: 20 serial transfers in a plate reader

text: 1.2 mL of infected bacteria

text: Evolved population of Phage M13, ID2.20


text: Yale University

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Viral

text: Paul Turner

text: Beth Williams

text: This is an evolved population of phage M13 after 20 passages on E. coli as part of a larger study. The ID6 refers to strain D6 from experiment I.

text: USA

characteristic: geo loc name

text: laboratory

text: Esherichia coli CSH22

text: Inovirus M13

characteristic: organism

text: 1.2 mL of infected bacteria

text: Evolved population of Phage M13, ID6.20


text: Yale University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Viral

characteristic: SRA accession

text: Paul Turner

characteristic: biomaterial provider

text: Beth Williams

text: This is an evolved population of phage M13 after 20 passages on E. coli as part of a larger study. The IG2 refers to strain G2 from experiment I.

text: USA

text: laboratory

text: Esherichia coli CSH22

text: Inovirus M13

text: 20 serial transfers in a plate reader

text: 1.2 mL at high density

text: Evolved population of Phage M13, IG2.20


text: Yale University

text: live

text: Viral

characteristic: NCBI submission model

text: Paul Turner

text: Beth Williams

text: This is an evolved population of phage M13 after 20 passages on E. coli as part of a larger study. The IIB6 refers to strain B6 from experiment II.

text: USA

text: laboratory

characteristic: isolation source

text: Esherichia coli CSH22

text: Inovirus M13

text: 20 serial transfers in a plate reader

text: 1.2 mL of infected bacteria

characteristic: temp

text: Evolved population of Phage M13, IIB6.20

characteristic: title


text: Yale University

text: live

text: Viral

characteristic: NCBI submission package

text: Paul Turner

text: Beth Williams

characteristic: collected by

characteristic: collection date

text: This is an evolved population of phage M13 after 20 passages on E. coli as part of a larger study. The IIC6 refers to strain C6 from experiment II.

text: USA

characteristic: isolate

text: laboratory

text: Esherichia coli CSH22

text: Inovirus M13

text: 20 serial transfers in a plate reader

text: 1.2 mL at high density

text: Evolved population of Phage M13, IIC6.20


characteristic: External Id

text: Yale University

characteristic: INSDC center name

text: live

text: Viral

text: Paul Turner

text: Beth Williams

text: This is an evolved population of phage M13 after 20 passages on E. coli as part of a larger study. The IIC10 refers to strain C10 from experiment II.

characteristic: description

text: USA

text: laboratory

text: Esherichia coli CSH22

characteristic: lab host

text: Inovirus M13

text: 20 serial transfers in a plate reader

text: 1.2 mL of infected bacteria

text: Evolved population of Phage M13, IIC10.20


text: Yale University

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Viral

text: Paul Turner

text: Beth Williams

text: This is an evolved population of phage M13 after 20 passages on E. coli as part of a larger study. The IID3 refers to strain D# from experiment II.

text: USA

characteristic: geo loc name

text: laboratory

text: Esherichia coli CSH22

text: Inovirus M13

characteristic: organism

text: 20 serial transfers in a plate reader

text: 1.2 mL at high density

text: Evolved population of Phage M13, IID3.20


text: Yale University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Viral

characteristic: SRA accession

text: Paul Turner

characteristic: biomaterial provider

text: Beth Williams

text: This is an evolved population of phage M13 after 20 passages on E. coli as part of a larger study. The IIE3 refers to strain E3 from experiment II.

text: USA

text: laboratory

text: Esherichia coli CSH22

text: Inovirus M13

text: 20 serial transfers in a plate reader

text: 1.2 mL of infected bacteria

text: Evolved population of Phage M13, IIE3.20


text: Yale University

text: live

text: Viral

characteristic: NCBI submission model

text: Paul Turner

text: Beth Williams

text: This is an evolved population of phage M13 after 20 passages on E. coli as part of a larger study. The IIG8 refers to strain G8 from experiment II.

text: USA

text: laboratory

characteristic: isolation source

text: Esherichia coli CSH22

text: Inovirus M13

text: 20 serial transfers in a plate reader

text: 1.2 mL at high density

characteristic: temp

text: Evolved population of Phage M13, IIG8.20

characteristic: title


text: chicken

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: Immunology and Microbiology Laboratory, PUCRS

characteristic: collected by

characteristic: collection date

text: Brazil

text: poultry carcass (Gallus gallus domesticus)

text: chicken:FOODON_03411457, poultry carcass:FOODON_03309387

characteristic: ontological term

text: Salmonella enterica

text: Senftenberg

characteristic: serovar

text: animal

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Salmonella enterica


characteristic: External Id

text: environmental

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: Brazil

characteristic: geo loc name

text: drag swab

text: drag swab:GENEPIO_0002713

text: Salmonella enterica

characteristic: organism

text: Senftenberg

text: environmental


text: veterinary clinical/research, chicken

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: ADRDL, SDSU

text: USA:IA

text: intestine (Gallus gallus domesticus)

characteristic: isolation source

text: chicken:FOODON_03411457, intestine:UBERON_0000160

text: Salmonella enterica

text: Infantis

text: animal


text: Department of Biological Sciences, University of Maryland - Baltimore County

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: WT

characteristic: genotype/variation

text: Cellvibrio japonicus

text: glucose - stationary

characteristic: protocol

text: bacterial cell pellet

characteristic: title


text: live

text: Generic

characteristic: NCBI submission package

text: WT

text: Cellvibrio japonicus

text: glucose - exponential

text: bacterial cell pellet


text: environmental

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

characteristic: collected by

characteristic: collection date

text: Brazil

text: drag swab

text: drag swab:GENEPIO_0002713

characteristic: ontological term

text: Salmonella enterica

text: Schwarzengrund

characteristic: serovar

text: environmental

characteristic: source type


characteristic: External Id

text: environmental

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: Brazil

characteristic: geo loc name

text: drag swab

text: drag swab:GENEPIO_0002713

text: Salmonella enterica

text: environmental

characteristic: strain


text: meat

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: SRA accession

text: environmental/food/other

text: FERA

text: United Kingdom

text: retail meat

characteristic: isolation source

text: meat food product:FOODON_00001006

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: environmental-water

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

text: USA:DE

text: water

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: title


characteristic: External Id

text: environmental

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: FDA

text: USA:MD

text: soil

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: source type


text: environmental-water

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: FDA

text: USA:MD

characteristic: geo loc name

text: water

text: Salmonella enterica

text: GenomeTrakr

text: environmental

characteristic: strain


text: clinical/research| human

text: FDA/CFSAN

text: live

text: Pathogen.cl

text: clinical/host-associated

text: Julie Haendiges

characteristic: genotype

text: USA: MD

text: Homo sapiens

characteristic: host

text: stool

characteristic: isolation source

text: Vibrio parahaemolyticus

characteristic: organism

text: human

text: Pathogen: clinical or host-associated sample from Vibrio parahaemolyticus


text: clinical/research| human

characteristic: IFSAC+ Category

text: FDA/CFSAN

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: clinical/host-associated

characteristic: collection date

text: USA: MD

text: Homo sapiens

text: stool

text: Vibrio parahaemolyticus

text: human


characteristic: External Id

text: multi-ingedient| dairy

text: live

text: Pathogen.env

text: environmental/food/other

text: Univ. of Zurich

characteristic: collected by

text: Switzerland

text: powdered infant formula control

text: infant formula (powdered):foodon_03301066

characteristic: ontological term

text: Cronobacter sakazakii

text: food

text: Pathogen: environmental/food/other sample from Cronobacter sakazakii

characteristic: title


text: environmental-factory/production facility

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: Univ. of Zurich

text: Switzerland

text: environmental swab sponge powder infant formula manufacturing facility

text: environmental (swab or sampling):genepio_0001732| infant formula:foodon_03303130| food (powdered):foodon_00002976| manufacturing:obi_0000457

text: Cronobacter sakazakii

text: environmental

characteristic: source type


text: multi-ingredient

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Univ. of Zurich

text: Switzerland

characteristic: geo loc name

text: powder infant formula

text: infant formula:foodon_03303130| food (powdered):foodon_00002976

text: Cronobacter sakazakii

text: food


text: University of Michigan

characteristic: INSDC secondary accession

text: live

text: Viral

characteristic: SRA accession

text: Escherichia coli DH10B

characteristic: lab host

text: Inovirus M13

text: Substrate phage display library: pooled, set1


name: Substrate phage display library: pooled, set2

text: University of Michigan

text: live

text: Viral

text: Echerichia coli DH10B

text: Inovirus M13

characteristic: organism


name: Substrate phage display library: pooled, set3

text: University of Michigan

text: live

text: Viral

characteristic: NCBI submission package

text: Echerichia coli DH10B

text: Inovirus M13


text: IGC, Salk Institute for Biological Studies

text: live

text: Generic

characteristic: biomaterial provider

text: Coriell Cell repositories; http://ccr.coriell.org/

text: iPSC derived from Angelman syndrome patient

characteristic: cell type

text: DNM3B gene was knocked out

characteristic: genotype/variation

text: CpG free neo cassette is integrated in SNURF/SNRPN locus

text: Homo sapiens

text: B-lymphocyte

characteristic: source cell type

text: HR2 AS DNM3BKO iPS Input

text: HR2 AS DNM3BKO iPS Input


characteristic: External Id

text: live

text: Generic

text: DNM3B gene was knocked out

text: Homo sapiens

text: B-lymphocyte

text: HR1 AS DNM3BKO iPS Input

text: HR1 AS DNM3BKO iPS Input

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: DNM3B gene was knocked out

text: Homo sapiens

text: B-lymphocyte

text: AS DNM3BKO iPS Input

text: AS DNM3BKO iPS Input


text: live

characteristic: INSDC status

text: Generic

text: DNM3B gene was knocked out

text: Homo sapiens

text: B-lymphocyte

text: HR2 AS DNM3BKO iPS H3K4me3

text: HR2 AS DNM3BKO iPS H3K4me3


characteristic: INSDC last update

text: live

text: Generic

text: DNM3B gene was knocked out

text: Homo sapiens

text: B-lymphocyte

text: HR1 AS DNM3BKO iPS H3K4me3

text: HR1 AS DNM3BKO iPS H3K4me3


text: live

text: Generic

characteristic: NCBI submission model

text: DNM3B gene was knocked out

text: Homo sapiens

text: B-lymphocyte

text: AS DNM3BKO iPS H3K4me3

text: AS DNM3BKO iPS H3K4me3


text: live

text: Generic

text: iPSC

text: wild type iPSC

text: Homo sapiens

text: B-lymphocyte

text: WT iPS H3K4me3

text: WT iPS H3K4me3


text: live

text: Generic

text: DNA methylation-corrected AS iPSCs

text: Homo sapiens

text: B-lymphocyte

text: AS HR2 Input

text: AS HR2 iPS Input


text: live

text: Generic

text: Homo sapiens

text: B-lymphocyte

text: AS iPS Input

text: AS iPS Input


text: live

text: Generic

text: iPSC

text: wild type iPSC

text: Homo sapiens

text: B-lymphocyte

text: WT iPS Input

text: WT iPS Input


text: live

text: Generic

text: iPSC line derived from Angelman syndrome patient

text: DNA methylation-corrected AS iPSCs

text: CpG free neo cassette is integrated in SNURF/SNRPN locus at site3 and SNURF promoter was deleted

text: Homo sapiens

text: B-lymphocyte

text: AS HR site 3 prodel2 iPSCs

text: AS HR site 3 prodel2 iPSCs


text: live

text: Generic

text: DNA methylation-corrected AS iPSCs

text: Homo sapiens

text: B-lymphocyte

text: AS HR site 3 prodel1 iPSCs

text: AS HR site 3 prodel1 iPSCs


text: live

text: Generic

text: DNA methylation-corrected AS iPSCs

text: CpG free neo cassette was excised from AS HR5 iPSCs

text: Homo sapiens

text: B-lymphocyte

text: AS HR2 neo ex iPS H3K4me3

text: AS HR2 neo ex iPS H3K4me3


text: live

text: Generic

text: Homo sapiens

text: B-lymphocyte

text: AS iPS H3K4me3

text: AS iPS H3K4me3


text: live

text: Generic

text: DNA methylation-corrected AS iPSCs

text: CpG free neo cassette is integrated in SNURF/SNRPN locus at site3

text: Homo sapiens

text: B-lymphocyte

text: AS HR site 3 iPSCs

text: AS HR site 3 iPSCs


text: live

text: Generic

text: DNA methylation-corrected AS iPSCs

text: CpG free neo cassette is integrated in SNURF/SNRPN locus at site2

text: Homo sapiens

text: B-lymphocyte

text: AS HR site 2 iPSCs

text: AS HR site 2 iPSCs


text: live

text: Generic

text: DNA methylation-corrected AS iPSCs

text: Homo sapiens

text: B-lymphocyte

text: AS HR5 neo ex iPSCs

text: AS HR5 neo ex iPSCs


text: live

text: Generic

text: DNA methylation-corrected AS iPSCs

text: CpG free neo cassette is integrated in SNURF/SNRPN locus on both allele

text: Homo sapiens

text: B-lymphocyte

text: AS HR5 iPSCs

text: AS HR5 iPSCs


Bacillus pseudofirmus MRWL7

text: California State University, Fresno

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: USA:Nevada

characteristic: geo loc name

text: Underwater soil

characteristic: isolation source

text: Alkalihalophilus pseudofirmus

text: cell culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Alkalihalophilus pseudofirmus


Bacillus pseudofirmus MRML5

text: California State University, Fresno

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: USA: Mono Lake, CA

text: Underwater soil

text: Alkalihalophilus pseudofirmus

characteristic: organism

text: cell culture


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: HMB-IRB

text: No

characteristic: is tumor

text: SNP/CNV Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study NHLBI TOPMed: Women's Health Initiative (WHI)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Blood

text: HMB-IRB

text: No

text: SNP/CNV Genotypes (NGS)

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

text: NHLBI TOPMed: Women's Health Initiative (WHI)

characteristic: title


text: dbGaP

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

text: HMB-IRB-NPU

text: No

text: SNP/CNV Genotypes (NGS)

text: Homo sapiens

characteristic: organism

text: female

text: Prospective Longitudinal Cohort


text: dbGaP

text: live

text: Generic

text: DNA

text: Blood

characteristic: body site

text: HMB-IRB

text: No

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design

characteristic: study name

characteristic: submitted sample id


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

text: Blood

text: HMB-IRB-NPU

text: No

text: Homo sapiens

text: female

text: Prospective Longitudinal Cohort

characteristic: submitted subject id

characteristic: submitter handle


text: Anses

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Anses

characteristic: collected by

characteristic: collection date

text: France

characteristic: geo loc name

text: chicken

characteristic: host

text: caecal sample

characteristic: isolation source

text: Campylobacter jejuni

characteristic: strain

text: Pathogen: environmental/food/other sample from Campylobacter jejuni

characteristic: title


characteristic: External Id

text: Anses

characteristic: INSDC center name

text: live

text: Pathogen.env

text: Anses

text: France

text: chicken

text: carcass swab

text: Campylobacter jejuni

characteristic: organism


text: Anses

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: Anses

text: France

text: chicken offal or meat

text: Campylobacter jejuni


text: Anses

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: Anses

text: France

text: Bos taurus

text: Campylobacter jejuni


text: Anses

text: live

characteristic: INSDC status

text: Pathogen.env

text: Anses

text: France

text: dog

text: Campylobacter jejuni


text: Anses

text: live

text: Pathogen.env

characteristic: NCBI submission model

text: Anses

text: France

text: cat

text: Campylobacter jejuni


text: Anses

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: National Reference Center for Campylobacter

text: France

text: Homo sapiens

text: Campylobacter gastroenteritis

characteristic: host disease

text: Campylobacter jejuni

text: Pathogen: clinical or host-associated sample from Campylobacter jejuni


text: Anses

text: live

text: Pathogen.env

characteristic: SRA accession

text: IFREMER

characteristic: collected by

text: France

text: environmental waters

text: Campylobacter jejuni


text: Anses

text: live

text: Pathogen.env

text: IFREMER

characteristic: collection date

text: France

characteristic: geo loc name

text: sand (bathing beach)

text: Campylobacter jejuni


text: Anses

text: live

text: Pathogen.env

text: IFREMER

text: France

text: mussel

characteristic: host

text: Campylobacter jejuni


text: veterinary clinical/research| cow

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: environmental/food/other

text: Kansas State University Pre-harvest Food Safety Laboratory

text: USA:NE

text: Bos taurus

text: feces of feedlot cattle (Bos taurus)

characteristic: isolation source

text: bos taurus:ncbitaxon_9913| feces:uberon_0001988| feedlot:envo_01000627| cattle:foodon_03411161

characteristic: ontological term

text: Escherichia coli

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

characteristic: serotype

text: animal

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Escherichia coli


characteristic: External Id

text: veterinary clinical/research, companion animal

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

text: environmental/food/other

text: Ohio Dept. of Agriculture

text: USA:MI

text: dog feces

text: dog:FOODON_03414847, feces:UBERON_0001988

text: Clostridium perfringens

characteristic: organism

text: animal

text: Pathogen: environmental/food/other sample from Clostridium perfringens

characteristic: title


text: veterinary clinical/research| companion animal

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: Ohio Dept. of Agriculture

characteristic: collected by

characteristic: collection date

text: USA:MI

characteristic: geo loc name

text: dog feces

text: Clostridium perfringens

text: animal


tag: Namespace:DOE Joint Genome Institute

text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: Stutzerimonas stutzeri

text: Pseudomonas stutzeri transposon growth condition scale-up RCH2


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Colletotrichum somersetense

text: CBS 131599

text: Colletotrichum somersetensis CBS131599

text: culture from holotype of Colletotrichum somersetense

characteristic: type material


text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Stutzerimonas stutzeri

characteristic: strain

text: Pseudomonas stutzeri RCH2


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Stutzerimonas stutzeri

text: Pseudomonas stutzeri RCH2


text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Stutzerimonas stutzeri

text: Pseudomonas stutzeri RCH2


text: Engineered | WWTP | Aerobic digester | Activated sludge | Unclassified

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

characteristic: investigation type

text: Wastewater treatment plant

characteristic: isolation source

text: 48.3 N 16.2 E

characteristic: lat lon

text: Wastewater treatment plant

characteristic: material

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME C08B38

characteristic: project name


text: DOE Joint Genome Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

characteristic: organism

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME CR02B12

characteristic: title


text: DOE Joint Genome Institute

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: Austria: Klosterneuburg

characteristic: geo loc name

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME CR19B59


characteristic: External Id

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D02B22


text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

characteristic: investigation type

text: Wastewater treatment plant

characteristic: isolation source

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D04B24


text: DOE Joint Genome Institute

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

text: Wastewater treatment plant

text: 48.3 N 16.2 E

characteristic: lat lon

text: Wastewater treatment plant

characteristic: material

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D05B25

characteristic: project name


text: DOE Joint Genome Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D07B27


text: DOE Joint Genome Institute

text: live

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

characteristic: organism

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D08B28


text: DOE Joint Genome Institute

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: Austria: Klosterneuburg

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D13B63

characteristic: title


characteristic: External Id

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

characteristic: geo loc name

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D15B65


text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

characteristic: investigation type

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D20B70


text: DOE Joint Genome Institute

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

text: Wastewater treatment plant

characteristic: isolation source

text: 48.3 N 16.2 E

characteristic: lat lon

text: Wastewater treatment plant

characteristic: material

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME DR12B42


text: DOE Joint Genome Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME DR13B43

characteristic: project name


text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME DR18B48


text: DOE Joint Genome Institute

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: Austria: Klosterneuburg

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

characteristic: organism

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrospira DOME C01B31


characteristic: External Id

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrospira DOME D10B30

characteristic: title


text: Engineered | WWTP | Aerobic digester | Activated sludge | Unclassified

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

characteristic: geo loc name

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrospira DOME DR08B08


text: DOE Joint Genome Institute

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

characteristic: investigation type

text: Wastewater treatment plant

characteristic: isolation source

text: 48.3 N 16.2 E

characteristic: lat lon

text: Wastewater treatment plant

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrospira DOME DR11B41


text: DOE Joint Genome Institute

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

text: Keywords: GSC:MIxS;MIMS:6.0

text: Austria: Klosterneuburg

text: Wastewater treatment plant

text: 48.3 N 16.2 E

text: Wastewater treatment plant

characteristic: material

text: activated sludge metagenome

text: Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrospira DOME DR14B44


text: Environmental | Aquatic | Marine | Unclassified | Unclassified

text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: collection date

text: Marine eukaryotic communities from various locations to study complex ecological interactions - Uncultured MALV JGI Plate_1_A8 (single cell/cell enrichment)

text: Pacific Ocean

text: Marine

text: 36.6880 N 122.3860 W

text: marine metagenome


text: IMBB-FORTH

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: BrU-IP

characteristic: anti-brdu

characteristic: cell line

characteristic: chase with 20mm uridine

characteristic: labeling time

text: Homo sapiens

text: anti-BrdU (mouse monoclonal from BD Pharmigen)

characteristic: rip antibody

text: BD Pharmigen

characteristic: rip antibody vendor

text: 15min BrU-labeling; 60min uridine chase


characteristic: External Id

text: IMBB-FORTH

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: BrU-IP

text: Homo sapiens

characteristic: organism

text: BD Pharmigen

text: 15min BrU-labeling; 30min uridine chase

characteristic: title


text: IMBB-FORTH

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: BrU-IP

text: Homo sapiens

text: BD Pharmigen

text: 15min BrU-labeling; 15min uridine chase


text: IMBB-FORTH

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: BrU-IP

text: Homo sapiens

text: BD Pharmigen

text: 15min BrU-labeling; 0min uridine chase


text: dbGaP

text: live

text: Generic

characteristic: NCBI submission package

text: DNA

characteristic: analyte type

text: UDN

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: GRU

text: SNP/CNV Genotypes (NGS)

characteristic: molecular data type

text: Homo sapiens

text: female

characteristic: sex

text: Prospective Longitudinal Cohort

characteristic: study design

text: Rare Diseases

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

text: UDN

characteristic: submitter handle

text: DNA sample from Blood of a human female participant in the dbGaP study Clinical and Genetic Evaluation of Individuals with Undiagnosed Disorders through the Undiagnosed Diseases Network (UDN)


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: DNA

text: NICHD Epigenetic Analysis Malnutrition

text: BLOOD

text: HMB-IRB

text: Peripheral blood mononuclear cells

characteristic: histological type

text: Homo sapiens

characteristic: organism

text: female

text: Clinical Trial

text: Stunting

text: Epigenetic Analysis of Malnutrition

text: Yes

text: NICHD Epigenetic Analysis Malnutrition

text: DNA sample from BLOOD of a human female participant in the dbGaP study Epigenetic Analysis of Malnutrition

characteristic: title


text: dbGaP

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: DNA

characteristic: analyte type

text: NICHD Epigenetic Analysis Malnutrition

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: BLOOD+Spike-in

characteristic: body site

text: HMB-IRB

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: male

characteristic: sex

text: Clinical Trial

text: Stunting

text: Epigenetic Analysis of Malnutrition

text: Yes

text: NICHD Epigenetic Analysis Malnutrition

text: DNA sample from BLOOD+Spike-in of a human male participant in the dbGaP study Epigenetic Analysis of Malnutrition


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

text: NICHD Epigenetic Analysis Malnutrition

text: BLOOD

text: HMB-IRB

text: Peripheral blood mononuclear cells

text: Homo sapiens

text: male

text: Clinical Trial

characteristic: study design

text: Stunting

characteristic: study disease

text: Epigenetic Analysis of Malnutrition

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

text: NICHD Epigenetic Analysis Malnutrition

characteristic: submitter handle

text: DNA sample from BLOOD of a human male participant in the dbGaP study Epigenetic Analysis of Malnutrition


text: clinical/research| human

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: SRA accession

text: clinical/host-associated

text: Malbran Institute-Argentina

characteristic: collected by

characteristic: collection date

text: Argentina

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: stool

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: Typhimurium

characteristic: serovar

text: human

characteristic: source type

characteristic: strain

text: Pathogen: clinical or host-associated sample from Salmonella enterica

characteristic: title


characteristic: External Id

text: clinical/research, human

characteristic: IFSAC+ Category

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: clinical/host-associated

text: Malbran Institute-Argentina

text: Argentina

text: Homo sapiens

text: stool

text: Salmonella enterica

text: Typhimurium

text: human


text: IGC, Salk Institute for Biological Studies

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: HEK 293T

characteristic: cell line

text: rRNA depleted RNA

characteristic: molecule type

text: Homo sapiens

text: embryonic kidney cells

text: HEK 293T rRNA Depleted RNA


text: live

text: Generic

text: HEK 293T

text: polyA selected RNA

text: Homo sapiens

characteristic: organism

text: embryonic kidney cells

text: HEK 293T PolyA Selected RNA


text: live

text: Generic

text: HEK 293T

text: total RNA

text: Homo sapiens

text: embryonic kidney cells

text: HEK 293T Kapa Total RNA


text: environmental-water

text: live

text: Pathogen.env

text: environmental/food/other

text: Nova

characteristic: collected by

characteristic: collection date

text: USA:FL

characteristic: geo loc name

text: water

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica

text: environmental

text: Pathogen: environmental/food/other sample from Salmonella enterica


characteristic: External Id

text: environmental

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: Nova

text: USA:FL

text: soil

text: Salmonella enterica

text: environmental

characteristic: source type

characteristic: strain

characteristic: title


text: environmental

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: Nova

text: USA:FL

text: soil

text: Salmonella enterica

text: environmental


text: environmental-water

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: Nova

text: USA:FL

text: water

text: Salmonella enterica

text: environmental


Thioflexothrix psekupsii D3

text: New England Biolabs

text: live

text: Microbe, viral or environmental

text: Russia: Krasnodar region

text: sulfide spring

text: Thioflexithrix psekupsensis

characteristic: organism

text: sulfur mats

characteristic: sample type

text: Thioflexothrix psekupsii D3

text: type strain of Thioflexithrix psekupsensis

characteristic: type-material


text: Max Planck Institute for Marine Microbiology

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.wastewater

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: wastewater

characteristic: env biome

text: municipal wastewater plant

characteristic: env feature

text: sludge

text: Germany: Osterholz-Scharmbeck

characteristic: geo loc name

text: defined anaerobic medium, see Harder, Foss, Geomicrobiology J 16, 295-305 (1999)

text: municipal waste water treatment plant, activated sewage sludge

text: 53.211 N 8.788 E

characteristic: lat lon

text: Candidatus Velamenicoccus archaeovorus

text: genome report

text: LiM

text: originally submitted as Candidatus Vampirococcus archaeovorus

text: MIGS Cultured Bacterial/Archaeal sample: candidatus Vampirococcus archaeovorus


characteristic: External Id

text: MMMOSAM:ec327526-a687-416b-9ce2-2a25d0a0a30a

text: Modernising Medical Microbiology, NDM, Oxford University

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: ModMedMicOxford

characteristic: collected by

text: United Kingdom: London

text: Sciurus carolinensis

characteristic: host

text: skin

characteristic: isolation source

text: Mammaliicoccus sciuri

text: whole organism

text: NCTC 12103

characteristic: strain

text: Staphylococcus genus type strain

text: type strain of Staphylococcus sciuri

characteristic: type material


text: Genomic Medicine, Cleveland Clinic

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: cancer associated fibroblast

characteristic: cell type

text: Cancer

characteristic: disease state

text: Homo sapiens

characteristic: organism

text: Colon fibroblast

text: Colon fibroblast_Cancer RNA (CA2)

characteristic: title


characteristic: External Id

text: Genomic Medicine, Cleveland Clinic

characteristic: INSDC secondary accession

text: live

text: Generic

text: cancer associated fibroblast

text: Cancer

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Cancer RNA (CA1)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

characteristic: SRA accession

text: normal fibroblast

text: Normal

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Normal MiGS (N3)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: normal fibroblast

text: Normal

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Normal MiGS (N2)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: normal fibroblast

text: Normal

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Normal MiGS (N1)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: colitis fibroblast

text: Colitis

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Colitis MiGS (CO5)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: colitis fibroblast

text: Colitis

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Colitis MiGS (CO4)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: colitis fibroblast

text: Colitis

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Colitis MiGS (CO2)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: colitis fibroblast

text: Colitis

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Colitis MiGS (CO1)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: cancer associated fibroblast

text: Cancer

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Cancer MiGS (CA4)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: cancer associated fibroblast

text: Cancer

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Cancer MiGS (CA3)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: cancer associated fibroblast

text: Cancer

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Cancer MiGS (CA2)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: cancer associated fibroblast

text: Cancer

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Cancer MiGS (CA1)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: normal fibroblast

text: Normal

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Normal RNA (N3)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: normal fibroblast

text: Normal

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Normal RNA (N2)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: normal fibroblast

text: Normal

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Normal RNA (N1)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: colitis fibroblast

text: Colitis

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Colitis RNA (CO5)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: colitis fibroblast

text: Colitis

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Colitis RNA (CO4)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: colitis fibroblast

text: Colitis

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Colitis RNA (CO2)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: cancer associated fibroblast

text: Cancer

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Cancer RNA (CA4)


text: Genomic Medicine, Cleveland Clinic

text: live

text: Generic

text: cancer associated fibroblast

text: Cancer

text: Homo sapiens

text: Colon fibroblast

text: Colon fibroblast_Cancer RNA (CA3)


text: Hurd Laboratory of Molecular Psychopharmacology, Fishberg Department of Neuroscience, Icahn School of Medicine at Mount Sinai

text: live

text: Generic

text: Striatopallidal neuron

text: Rattus norvegicus

text: Striatum


text: live

text: Generic

text: Striatomesencephalic neuron

text: Rattus norvegicus

text: Striatum


text: multi-ingredient, crustaceans

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: China

characteristic: geo loc name

text: frozen crab cocktail claw

text: crab claw:FOODON_00002677, frozen:PATO_0001985

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

text: food

characteristic: source type


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA

text: Taiwan

text: FROZEN FARMED TILAPIA FILLET

characteristic: isolation source

text: Salmonella enterica

text: GenomeTrakr

characteristic: strain


characteristic: External Id

text: seeded vegetables (vine-grown)

characteristic: IFSAC Category

text: live

text: Pathogen.env

text: environmental/food/other

text: FDA

text: Mexico

text: cucumber

text: cucumber (whole, raw):FOODON_03301545

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: food

characteristic: title


text: University of Utah

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: SRA accession

text: Project LLAMA

characteristic: collected by

characteristic: collection date

text: Sample used for DNA extraction. Additional specimen data available at www.antweb.org.

characteristic: description

text: Mexico

characteristic: geo loc name

text: Alfaria minuta

text: whole organism

characteristic: sample type

text: female

characteristic: sex

characteristic: specimen voucher

text: 1 adult worker

characteristic: tissue

text: Model organism or animal sample from Alfaria minuta


text: University of Utah

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Project LLAMA

text: Nicaragua

text: Alfaria simulans

text: whole organism

text: female

text: 1 adult worker

text: Model organism or animal sample from Alfaria simulans


Bacteria

characteristic: External Id

text: ICAR-Indian Agricultural Research Institute, New Delhi

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.plant-associated

text: Keywords: GSC:MIxS;MIGS:6.0

text: Rice biome

characteristic: env biome

text: Wet land

characteristic: env feature

text: Root tissue

text: India: IARI PUSA, New Delhi

text: Oryza sativa

characteristic: host

text: Nutrient agar and 28 degree C

text: Rice Root

characteristic: isolation source

text: 28.08 N 77.12 E

characteristic: lat lon

text: Stutzerimonas stutzeri

characteristic: organism

text: Unpublished

text: KMS 55

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Stutzerimonas stutzeri

characteristic: title


name: Bartonella schoenbuchensis R1 PEE0248 resequencing

text: University of Basel

text: live

text: Pathogen.cl

text: Christoph Dehio

characteristic: collected by

characteristic: collection date

text: Germany: Schoenbuch

characteristic: geo loc name

text: Capreolus capreolus

text: bartonellosis

characteristic: host disease

text: blood sample

text: 48.31 N 9.03 E

text: Bartonella schoenbuchensis R1

text: Pathogen: clinical or host-associated sample from Bartonella schoenbuchensis R1

text: type strain of Bartonella schoenbuchensis

characteristic: type material


text: Bioinformatics, The Babraham Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Mus musculus

text: GEO accession GSM2452920 is currently private and is scheduled to be released on Nov 01, 2025.


characteristic: External Id

text: Bioinformatics, The Babraham Institute

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Mus musculus

text: GEO accession GSM2452919 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

characteristic: organism

text: GEO accession GSM2452925 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452923 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452922 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452921 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452924 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452936 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452935 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452934 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452933 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452932 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452931 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452930 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452929 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452928 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452927 is currently private and is scheduled to be released on Nov 01, 2025.


text: Bioinformatics, The Babraham Institute

text: live

text: Generic

text: Mus musculus

text: GEO accession GSM2452926 is currently private and is scheduled to be released on Nov 01, 2025.


text: veterinary clinical/research| cow

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: eae, ehxAeae, ehxA

text: environmental/food/other

text: Kansas State University Pre-harvest Food Safety Laboratory

text: USA:NE

text: Bos taurus

characteristic: host

text: feces of feedlot cattle (Bos taurus)

characteristic: isolation source

text: bos taurus:ncbitaxon_9913| feces:uberon_0001988| feedlot:envo_01000627| cattle:foodon_03411161

characteristic: ontological term

text: Escherichia coli

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

characteristic: serotype

text: animal

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Escherichia coli


text: veterinary clinical/research| cow

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: eae, ehxA

text: environmental/food/other

characteristic: collected by

characteristic: collection date

text: USA:NE

characteristic: geo loc name

text: Bos taurus

text: feces of feedlot cattle (Bos taurus)

text: Escherichia coli

text: GenomeTrakr

text: animal

characteristic: title


characteristic: External Id

text: veterinary clinical/research| cow

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: eae, ehxAeae, ehxA

characteristic: SRA accession

text: environmental/food/other

text: USA:TX

text: Bos taurus

text: feces of feedlot cattle (Bos taurus)

text: Escherichia coli

characteristic: organism

text: GenomeTrakr

text: animal


text: veterinary clinical/research| cow

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:NE

text: Bos taurus

characteristic: host

text: feces of feedlot cattle (Bos taurus)

characteristic: isolation source

characteristic: ontological term

text: Escherichia coli

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

characteristic: serotype

text: animal


text: veterinary clinical/research| cow

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: eae

text: environmental/food/other

characteristic: collected by

characteristic: collection date

text: USA:NE

text: Bos taurus

text: feces of feedlot cattle (Bos taurus)

text: Escherichia coli

text: GenomeTrakr

text: animal

characteristic: source type

characteristic: strain


characteristic: External Id

text: veterinary clinical/research| cow

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: eae, ehxA

text: environmental/food/other

text: USA:TX

characteristic: geo loc name

text: Bos taurus

text: feces of feedlot cattle (Bos taurus)

text: Escherichia coli

text: GenomeTrakr

text: animal

characteristic: title


text: environmental-animal housing

characteristic: IFSAC+ Category

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: North Carolina State University | College of Veterinary Medicine | Thakur Molecular Epidemiology Laboratory

text: USA:TN

text: litter

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Schwarzengrund

characteristic: serovar

text: environmental

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: clinical/research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: USA:TN

text: feces

characteristic: ontological term

text: Salmonella enterica

text: Schwarzengrund


text: veterinary clinical/research| chicken

text: live

text: Pathogen.env

text: environmental/food/other

characteristic: collected by

characteristic: collection date

text: USA:TN

text: chicken feces

text: chicken:FOODON_03411457, feces:UBERON_0001988

text: Salmonella enterica

text: Schwarzengrund

text: animal

characteristic: source type

characteristic: strain


characteristic: External Id

text: chicken

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: Microbiology Lab Animal Science, University of Ghana

text: Ghana

text: retail chicken

text: Escherichia coli

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food


text: chicken

characteristic: IFSAC Category

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: Ghana

characteristic: geo loc name

text: retail chicken

characteristic: isolation source

text: Salmonella enterica

text: food

characteristic: title


text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: Ghana

text: retail chicken

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: food


characteristic: External Id

text: Engineered | Bioreactor | Anaerobic | Digestate | Unclassified

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: collection date

text: Germany:Bielefeld, North Rhine-Westphalia, Germany

text: 52.0385 N 8.4956 E

characteristic: lat lon

text: biogas fermenter metagenome

text: Biogas fermentation microbial communities from Germany - Plant 1 RNA1


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

text: Bielefeld, North Rhine-Westphalia, Germany

text: 52.0385 N 8.4956 E

text: biogas fermenter metagenome

text: Biogas fermentation microbial communities from Germany - Plant 1 RNA2


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: 52.0385 N 8.4956 E

text: biogas fermenter metagenome

text: Biogas fermentation microbial communities from Germany - Plant 2 RNA1


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: 52.0385 N 8.4956 E

text: biogas fermenter metagenome

text: Biogas fermentation microbial communities from Germany - Plant 2 RNA2


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: isolation source

text: 52.0385 N 8.4956 E

text: biogas fermenter metagenome

text: Biogas fermentation microbial communities from Germany - Plant 3 RNA1


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: 52.0385 N 8.4956 E

text: biogas fermenter metagenome

text: Biogas fermentation microbial communities from Germany - Plant 3 RNA2

characteristic: title


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: 52.0385 N 8.4956 E

text: biogas fermenter metagenome

text: Biogas fermentation microbial communities from Germany - Plant 4 RNA1


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: 52.0385 N 8.4956 E

text: biogas fermenter metagenome

text: Biogas fermentation microbial communities from Germany - Plant 4 RNA2


text: Ningxia University, College of Life Science

text: live

text: Generic

text: AGRE

characteristic: common name

characteristic: culture-collection

text: Mesomycoplasma ovipneumoniae ATCC 29419

text: ATCC 29419

characteristic: strain

text: Sample from Mesomycoplasma ovipneumoniae ATCC 29419

text: type strain of Mycoplasma ovipneumoniae

characteristic: type material


Simonsiella muelleri

text: INRS-Institut Armand Frappier

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: Homo sapiens

characteristic: host

text: oral cavities

text: Simonsiella muelleri ATCC 29453

text: whole organism

characteristic: sample type

text: ATCC 29453

text: Microbe sample from Simonsiella muelleri ATCC 29453

text: type strain of Simonsiella muelleri


characteristic: External Id

text: Bonasio, Cell and Developmental Biology, University of Pennsylvania

characteristic: INSDC secondary accession

text: live

text: Generic

text: WT

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: U-2932 cell line (DLBLC)

text: U-2932 WT - untreated - rep2

text: NT

characteristic: treatment


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: WT

text: Homo sapiens

text: U-2932 cell line (DLBLC)

text: U-2932 WT - untreated - rep1

text: NT


text: live

text: Generic

text: Roquin-2 Y691F

text: Homo sapiens

text: U-2932 cell line (DLBLC)

text: U-2932 Y691F - + IgM - rep3

characteristic: title

text: IgM


text: live

text: Generic

text: Roquin-2 Y691F

text: Homo sapiens

text: U-2932 cell line (DLBLC)

text: U-2932 Y691F - + IgM - rep2

text: IgM


text: live

text: Generic

text: Roquin-2 Y691F

text: Homo sapiens

text: U-2932 cell line (DLBLC)

text: U-2932 Y691F - + IgM - rep1

text: IgM


text: live

text: Generic

text: Roquin-2 Y691F

text: Homo sapiens

text: U-2932 cell line (DLBLC)

text: U-2932 Y691F - untreated - rep3

text: NT


text: live

text: Generic

text: Roquin-2 Y691F

text: Homo sapiens

text: U-2932 cell line (DLBLC)

text: U-2932 Y691F - untreated - rep2

text: NT


text: live

text: Generic

text: Roquin-2 Y691F

text: Homo sapiens

text: U-2932 cell line (DLBLC)

text: U-2932 Y691F - untreated - rep1

text: NT


text: live

text: Generic

text: WT

text: Homo sapiens

text: U-2932 cell line (DLBLC)

text: U-2932 WT - + IgM - rep3

text: IgM


text: live

text: Generic

text: WT

text: Homo sapiens

text: U-2932 cell line (DLBLC)

text: U-2932 WT - + IgM - rep2

text: IgM


text: live

text: Generic

text: WT

text: Homo sapiens

text: U-2932 cell line (DLBLC)

text: U-2932 WT - + IgM - rep1

text: IgM


text: live

text: Generic

text: WT

text: Homo sapiens

text: U-2932 cell line (DLBLC)

text: U-2932 WT - untreated - rep3

text: NT


text: veterinary clinical/research, chicken

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

text: environmental/food/other

text: Minnesota Department of Health

characteristic: collected by

characteristic: collection date

text: USA:MN

characteristic: geo loc name

text: chicken feces (Gallus gallus domesticus)

characteristic: isolation source

text: chicken:FOODON_03411457, feces:UBERON_0001988

characteristic: ontological term

text: Campylobacter jejuni

text: animal

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Campylobacter jejuni


characteristic: External Id

text: Stanford University School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.human-oral

characteristic: SRA accession

text: antibiotics: cefotaxime, gentamicin, vancomycin

text: vaginal

characteristic: delivery mode

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: human

characteristic: env biome

text: tongue

characteristic: env feature

text: saliva

text: USA: Chicago

text: Homo sapiens

characteristic: host

text: 15-21 days

characteristic: host age

text: saliva

characteristic: host body product

text: prematurity

characteristic: host disease

text: male

characteristic: host sex

characteristic: host subject id

text: saliva

text: 0.95 kg

characteristic: isolate

text: Mixture of 3 samples- SAMN06308787, SAMN06308788, SAMN06308789

characteristic: label

text: 41.790 N 87.604 W

characteristic: lat lon

text: Candidatus Malacoplasma girerdii

text: swab

text: metagenomic assembly

characteristic: sample type

text: Biosample is a metagenomic assembly obtained from 3 human oral metagenome BioSamples: SAMN06308787, SAMN06308788, SAMN06308789

text: Low-Birthweight Baby 3 Saliva Days 15, 18 and 21 (a mixture of DNA extracted from SAMN06308787, SAMN06308788 and SAMN06308789) containing Candidatus Mycoplasma girerdii isolate UC_B3


characteristic: External Id

text: poultry

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: NCSU-CVM

characteristic: collected by

characteristic: collection date

text: Uganda

characteristic: geo loc name

text: poultry

characteristic: isolation source

text: poultry meat food product:FOODON_00001131

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: food

characteristic: source type

characteristic: strain

text: Pathogen: environmental/food/other sample from Salmonella enterica

characteristic: title


characteristic: External Id

text: cow

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: NCSU-CVM

text: Uganda

text: cattle

text: Salmonella enterica

text: animal


text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: Javiana

characteristic: serovar

text: environmental

text: enterica

characteristic: sub species

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Javiana


text: environmental-water

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: HI

characteristic: collected by

text: USA:HI

text: sewage

text: Salmonella enterica subsp. enterica serovar Javiana

text: Javiana

text: environmental

text: enterica


text: environmental-water

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

characteristic: collection date

text: USA:HI

characteristic: geo loc name

text: sewage

characteristic: isolation source

characteristic: ontological term

characteristic: organism

text: Havana

text: environmental

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Havana


characteristic: External Id

text: environmental-water

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: Meleagridis

text: environmental

characteristic: source type

characteristic: strain

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Meleagridis

characteristic: title


text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: Montevideo

characteristic: serovar

text: environmental

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Montevideo


text: environmental-water

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: Salmonella enterica subsp. enterica serovar Montevideo

text: Montevideo

text: environmental

text: enterica

characteristic: sub species


text: environmental-factory/production facility| environmental-water

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

characteristic: collected by

characteristic: collection date

text: USA:HI

characteristic: geo loc name

text: water filter

characteristic: isolation source

text: Oslo

text: environmental

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Oslo


characteristic: External Id

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

text: USA:HI

text: water filter

text: Salmonella enterica subsp. enterica serovar Oslo

characteristic: organism

text: Oslo

text: environmental

characteristic: source type

text: enterica


text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

characteristic: ontological term

text: Haifa

text: environmental

characteristic: strain

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Haifa

characteristic: title


text: environmental-water

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: HI

text: USA:HI

text: sewage

text: Salmonella enterica

text: Haifa

characteristic: serovar

text: environmental


text: environmental-water

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: HI

characteristic: collected by

characteristic: collection date

text: USA:HI

text: sewage

text: Salmonella enterica subsp. enterica serovar Haifa

text: Haifa

text: environmental

text: enterica

characteristic: sub species


characteristic: External Id

text: environmental-water

characteristic: INSDC last update

text: live

text: Pathogen.env

text: environmental/food/other

text: HI

text: USA:HI

characteristic: geo loc name

text: sewage

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Javiana

text: environmental


name: Bacillus cereus group isolate FSL M8-0091

text: Cornell University

characteristic: INSDC center name

text: live

text: Pathogen.env

text: Cornell University

text: USA

text: raw milk

text: Originally submitted as Bacillus cereus but changed in August 2018 because of ANI results to Bacillus wiedmannii

characteristic: note

text: Bacillus wiedmannii

text: FSL M8-0091

characteristic: strain

text: Pathogen: environmental/food/other sample from Bacillus wiedmannii


text: dairy, other (confectionery)

characteristic: IFSAC Category

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: OARSA

text: USA:TX

text: ice cream

text: ice cream food product:FOODON_00001045

characteristic: ontological term

text: Listeria monocytogenes

characteristic: serotype

text: food

characteristic: source type

text: Pathogen: environmental/food/other sample from Listeria monocytogenes

characteristic: title


CCTCC AB 2014251

text: Fujian Academy of Agricultural Sciences

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: CCTCC:AB 2014251

characteristic: culture collection

text: China

text: sediment

text: Evansella clarkii

text: cell culture

characteristic: sample type

text: CCTCC AB 2014251

text: Microbe sample from Evansella clarkii


characteristic: External Id

text: Fraunhofer Instutute for Molecular Biology and Applied Ecology, Industrial Biotechnology

characteristic: INSDC last update

text: live

text: Generic

text: Clc assembly cell

characteristic: assembly method

text: Strobel G, Stierle A, Stierle D

characteristic: collected-by

text: ALYI

characteristic: common name

characteristic: culture-collection

characteristic: genome coverage

text: Taxus brevifolia

characteristic: nat-host

text: Ceriporiopsis andreanae CBS 279.92

text: Illumina HiSEQ 200

characteristic: sequencing technology

text: CBS 279.92

text: Sample from Ceriporiopsis andreanae CBS 279.92

text: culture from holotype of Taxomyces andreanae

characteristic: type-material


text: IINSTM

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Tunisia

characteristic: geo loc name

text: scales farmed fish

characteristic: isolation source

text: Debaryomyces hansenii

characteristic: organism

text: tissue sample

characteristic: strain

text: Debaryomyces hansenii DhTun2015


characteristic: External Id

text: Portland State University

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 63 ppm

characteristic: ammonium

text: symbiont

characteristic: biotic relationship

text: 6.8 ppm

characteristic: calcium

text: 4.6 ppm

characteristic: chloride

characteristic: depth

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: 3.07 mg/L

text: 290 m

characteristic: elev

text: geothermal spring

characteristic: env biome

text: cooking pot

characteristic: env feature

text: water and sediment

text: TRUE

characteristic: environmental sample

text: 0.575 Mbp

characteristic: estimated size

text: New Zealand: Tikitere, geothermal spring

text: Desulfurococcales

characteristic: host

text: Enrichment culture in modified DSMZ 88 media at 80C

characteristic: isolate

text: 5 single cells from different organisms amplified by MDA; water and sediment from hot spring

text: 38.0654 S 176.3595 E

characteristic: lat lon

text: 0.347 ppm

characteristic: magnesium

text: hot springs metagenome

characteristic: metagenome source

text: TRUE

characteristic: metagenomic

text: bicarbonate 359 ppm

text: 0.001 ppm

characteristic: nitrite

text: This biosample is a metagenomic assembly obtained from the hot springs metagenome BioSample: SAMN06456794.

characteristic: note

text: Candidatus Nanoclepta minutus

characteristic: ph

text: 0.005 ppm

characteristic: phosphate

text: 7.2 ppm

characteristic: potassium

text: -293.9 mV

characteristic: redox potential

text: A.L. Reysenbach

text: anaerobe

text: metagenomic assembly

characteristic: sample-type

text: 41 ppm

characteristic: sodium

text: 33 ppm

characteristic: sulfate

text: 23 ppm

characteristic: sulfide

text: 78.5 C

characteristic: temp

text: MIGS Cultured Bacterial/Archaeal sample from Candidatus Nanoclepta minutus

characteristic: title

text: heterotroph

text: 168.0 FNU

characteristic: turbidity


characteristic: External Id

text: Whitehead Institute for Biomedical Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 3 weeks

characteristic: age

characteristic: generation

text: Arabidopsis thaliana

characteristic: organism

text: rosette leaves, Col/Cvi RIL495

text: Col/Cvi RIL495

characteristic: strain/background

text: rosette leaves

characteristic: tissue


text: live

text: Generic

text: 3 weeks

text: Arabidopsis thaliana

text: rosette leaves, Col/Cvi RIL363

text: Col/Cvi RIL363

text: rosette leaves


text: live

text: Generic

text: 3 weeks

text: Arabidopsis thaliana

text: rosette leaves, Col/Cvi RIL332

text: Col/Cvi RIL332

text: rosette leaves


text: live

text: Generic

text: 3 weeks

text: Arabidopsis thaliana

text: rosette leaves, Col/Cvi RIL303

text: Col/Cvi RIL303

text: rosette leaves


text: live

text: Generic

text: 3 weeks

text: Arabidopsis thaliana

text: rosette leaves, Col/Cvi RIL258

text: Col/Cvi RIL258

text: rosette leaves


text: live

text: Generic

text: 3 weeks

text: Arabidopsis thaliana

text: rosette leaves, Col/Cvi RIL242

text: Col/Cvi RIL242

text: rosette leaves


text: live

text: Generic

text: 3 weeks

text: Arabidopsis thaliana

text: rosette leaves, Col/Cvi RIL124

text: Col/Cvi RIL124

text: rosette leaves


text: live

text: Generic

text: 3 weeks

text: Arabidopsis thaliana

text: rosette leaves, Col/Cvi RIL84

text: Col/Cvi RIL84

text: rosette leaves


text: live

text: Generic

text: 3 weeks

text: Arabidopsis thaliana

text: rosette leaves, Col/Cvi RIL22

text: Col/Cvi RIL22

text: rosette leaves


text: live

text: Generic

text: 3 weeks

text: Arabidopsis thaliana

text: rosette leaves, Col/Cvi RIL8

text: Col/Cvi RIL8

text: rosette leaves


text: live

text: Generic

text: 3 weeks

text: Arabidopsis thaliana

text: rosette leaves, Cvi-0 parent line

text: Cvi-0 parent line

text: rosette leaves


text: live

text: Generic

text: 3 weeks

text: Arabidopsis thaliana

text: rosette leaves, Col-0 parent line

text: Col-0 parent line

text: rosette leaves


text: Environmental | Aquatic | Marine | Wetlands | Sediment

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: collection date

text: USA: Sacramento, CA

characteristic: geo loc name

text: Wetland sediment

characteristic: isolation source

text: 38.1072 N 121.6485 W

characteristic: lat lon

text: wetland metagenome

text: Environmental sample from Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta - surface sediment Aug2011 Site B2 Bulk


name: Metagenome from Guaymas Basin Sediments Dive 4484 depth 0-1 cm

characteristic: External Id

text: The University of Texas at Austin

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: Mexico: Guaymas Basin, Gulf of California

text: Guaymas Basin sediment from dive 4484 depth 0-1 cm

text: 27.0388 N 111.24560 W

text: marine sediment metagenome

text: Metagenome from Guaymas Basin sediment dive 4484 depth 0-1cm

characteristic: title