text: animal feed

characteristic: IFSAC+ Category

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: finished pet food

text: finished product:CURATION_0001404| pet food:FOODON_00002682

text: Salmonella enterica

text: environmental

text: enterica

characteristic: strain


status: PUBLIC

characteristic: External Id

text: animal feed

tag: attribute

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:CA

characteristic: geo loc name

text: finished feed

characteristic: isolation source

text: finished product:CURATION_0001404| food product for animal:FOODON_03309997

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: environmental

characteristic: source type

text: enterica

characteristic: species

text: Pathogen: environmental/food/other sample from Salmonella enterica

characteristic: title


text: environmental-factory/production facility

characteristic: IFSAC+ Category

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:KY

text: environmental swab sponge

text: Salmonella enterica

text: environmental

text: enterica

characteristic: strain


characteristic: External Id

text: vegetable row crops (leafy)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: raw baby spinach

text: spinach (whole, raw):FOODON_03301716|baby spinach:FOODON_00002977

text: Salmonella enterica

text: food

text: enterica


text: animal feed

characteristic: IFSAC+ category

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

text: USA:CA

text: finished feed

text: food product for animal:foodon_03309997

text: Salmonella enterica

text: enterica


text: animal feed

characteristic: INSDC secondary accession

text: live

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

characteristic: genus

text: USA:TX

characteristic: geo loc name

text: finished pet food

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: environmental

text: enterica


text: multi-ingredient

characteristic: IFSAC+ Category

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:RI

text: finished product

text: Salmonella enterica

text: food

characteristic: source type

text: enterica

characteristic: species

characteristic: strain

characteristic: title


characteristic: External Id

text: chicken

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:IN

text: chicken

text: Salmonella enterica

text: food

text: enterica


characteristic: INSDC secondary accession

text: live

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:NC

text: environmental swab sponge

text: Salmonella enterica

text: environmental

text: enterica


text: pig

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:PA

characteristic: geo loc name

text: raw pig

characteristic: isolation source

text: food (raw):FOODON_03311126, swine:FOODON_03411136

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: animal

text: enterica


text: environmental-water

characteristic: IFSAC+ Category

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: rinse water

text: Salmonella enterica

text: animal

characteristic: source type

text: enterica


characteristic: External Id

text: beef

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:NJ

text: raw beef

text: beef (raw):FOODON_03309737

text: Salmonella enterica

text: food

text: enterica

characteristic: species

characteristic: strain

characteristic: title


text: vegetable row crops (leafy)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: field organic spinach

text: field:ENVO_01000352|spinach (whole, raw):FOODON_03301716

text: Salmonella enterica

text: food

text: enterica


text: vegetable row crops (leafy)

characteristic: IFSAC Category

characteristic: INSDC secondary accession

text: live

characteristic: SRA accession

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:CA

text: raw spinach

text: spinach (whole, raw):FOODON_03301716

text: Salmonella enterica

text: food

text: enterica


text: animal feed

characteristic: IFSAC+ Category

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:MO

characteristic: geo loc name

text: pet food kibble

characteristic: isolation source

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: environmental

text: enterica


characteristic: External Id

text: clinical/research

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CO

text: raw bone

text: bone element:UBERON_0001474| food (raw):FOODON_03311126

text: Salmonella enterica

text: enterica

characteristic: species


text: nuts

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: raw almond

text: almond (whole, raw):FOODON_03301355

text: Salmonella enterica

text: food

characteristic: source type

text: enterica

characteristic: strain

characteristic: title


text: vegetable row crops

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:AZ

text: ethiopian cabbage brassica carinata texsel green

text: green cabbage:FOODON_00002921|brassica carinata:NCBITAXON_52824|ethiopian:ANCESTRO_0506

text: Salmonella enterica

text: food

text: enterica


text: nuts

characteristic: IFSAC+ Category

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:NC

characteristic: geo loc name

text: finished roasted peanut

text: Salmonella enterica

text: food

text: enterica


characteristic: External Id

text: beef

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:NE

text: boneless beef

characteristic: isolation source

text: beef food product:FOODON_00001041

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: food

text: enterica


text: nuts| seeded vegetables (legumes)

characteristic: INSDC center name

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:KY

text: peanut butter

text: peanut butter:FOODON_03306867

text: Salmonella enterica

text: food

text: enterica

characteristic: species


text: animal feed

characteristic: INSDC first public

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: meat bone meal

text: meat and bone meal:foodon_00002738

text: Salmonella enterica

text: environmental

characteristic: source type

text: enterica

characteristic: strain

characteristic: title


text: environmental

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: sponge

text: Salmonella enterica

text: environmental

text: enterica


text: animal feed

characteristic: IFSAC+ Category

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:CA

characteristic: geo loc name

text: finished feed

text: Salmonella enterica

text: environmental

text: enterica


characteristic: External Id

text: animal feed

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CO

text: pet food

characteristic: isolation source

text: pet food:FOODON_00002682

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: environmental

text: enterica


text: vegetable row crops (leafy)

characteristic: INSDC center name

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:AZ

text: field organic red chard

text: field:ENVO_01000352|swiss chard (raw):FOODON_03306698

text: Salmonella enterica

text: food

text: enterica

characteristic: species


text: animal feed

characteristic: INSDC first public

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: fertilizer bone meal

text: bone meal:envo_02000054, fertilizer:chebi_33287

text: Salmonella enterica

text: environmental

characteristic: source type

text: enterica

characteristic: strain

characteristic: title


text: root/underground (roots)

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:WA

text: finished carrot

text: Salmonella enterica

text: food

text: enterica


text: chicken

characteristic: IFSAC Category

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:IN

characteristic: geo loc name

text: chicken

text: Salmonella enterica

text: food

text: enterica


characteristic: External Id

text: vegetable row crops (leafy)

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

characteristic: ProjectAccession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: field organic wild arugula

characteristic: isolation source

text: field:ENVO_01000352|wild or gathered:FOODON_03530153|arugula greens (raw):FOODON_00002426

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: food

text: enterica


characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:GA

text: environmental swab sponge

text: Salmonella enterica

text: environmental

characteristic: source type

text: enterica

characteristic: species

characteristic: strain

characteristic: title


text: chicken

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

text: USA:IN

text: chicken

text: Salmonella enterica

text: food

text: enterica


characteristic: External Id

text: multi-ingredient

characteristic: IFSAC+ Category

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

characteristic: genus

text: USA:RI

characteristic: geo loc name

text: finished product

text: Salmonella enterica

text: food

text: enterica


text: UC Davis

characteristic: INSDC center name

text: live

text: Invertebrate

characteristic: NCBI submission model

text: R.J.P. Machado

characteristic: collected by

text: adult

characteristic: dev stage

text: Australia: Queensland, Barakula SF, Chinchilla

text: R.J.P. Machado

characteristic: identified by

text: Fissuleon brevigonarcus

text: TAMU - X1370167

characteristic: specimen voucher

text: legs and thorax

characteristic: tissue


text: environmental

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: North Carolina State University | College of Veterinary Medicine | Thakur Molecular Epidemiology Laboratory

text: Campylobacter

text: USA:NC

text: lagoon

characteristic: isolation source

characteristic: ontological term

text: Campylobacter coli

characteristic: organism

text: environmental

characteristic: source type

text: coli

characteristic: species

characteristic: strain

text: Pathogen: environmental/food/other sample from Campylobacter coli


characteristic: External Id

text: veterinary clinical/research| pig

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

characteristic: collection date

text: Campylobacter

characteristic: genus

text: USA:NC

characteristic: geo loc name

text: feces pig

text: feces:UBERON_0001988, swine:FOODON_03411136

text: Campylobacter coli

text: animal

text: coli

characteristic: title


text: meat| pig

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

characteristic: collected by

text: Campylobacter

text: USA:NC

text: pig carcass swab

text: swine:FOODON_03411136, carcass:UBERON_0008979, swab:NCIT_C17627

text: Campylobacter coli

text: animal

text: coli


text: environmental-water

text: live

text: environmental/food/other

text: Campylobacter

text: USA:NC

text: water

characteristic: isolation source

characteristic: ontological term

text: Campylobacter coli

characteristic: organism

text: environmental

characteristic: source type

text: coli

characteristic: species


characteristic: External Id

text: meat| pig

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: environmental/food/other

text: Thakur

text: Campylobacter

text: USA:NC

text: pig carcass swab

text: swine:FOODON_03411136| carcass:UBERON_0008979| swab:NCIT_C17627

text: Campylobacter coli

text: animal

text: coli

characteristic: strain


text: environmental-vehicle

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

characteristic: collection date

text: Campylobacter

characteristic: genus

text: USA:NC

characteristic: geo loc name

text: truck swab

text: truck:ENVO_01000602, swab:ncit_c17627

text: Campylobacter coli

text: environmental

text: coli


text: environmental

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: Thakur

text: Campylobacter

text: USA:NC

text: lagoon

text: Campylobacter coli

text: environmental

text: coli

characteristic: title


text: animal feed

text: live

text: environmental/food/other

characteristic: collected by

text: Campylobacter

text: USA:NC

text: feed

characteristic: isolation source

text: food product for animal:FOODON_03309997

characteristic: ontological term

text: Campylobacter coli

characteristic: organism

text: Animal feed

characteristic: source type

text: coli


characteristic: External Id

text: environmental-factory/production facility

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: environmental/food/other

text: Campylobacter

text: USA:NC

text: environmental swab sponge

text: environmental (swab or sampling):GENEPIO_0001732| environmental sponge:CURATION_0000359

text: Campylobacter coli

text: environmental

text: coli

characteristic: species


text: veterinary clinical/research| pig

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

characteristic: collection date

text: Campylobacter

characteristic: genus

text: USA:NC

text: pig mesenteric lymph node

text: mesenteric lymph node:UBERON_0002509, swine:FOODON_03411136

text: Campylobacter coli

text: animal

text: coli

characteristic: strain


DSM 1059

text: GEOMAR Helmholtz Centre for Ocean Research Kiel

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: culture collection

text: Egypt: Wadi Natrun

characteristic: geo loc name

text: Imhoff A

text: soda lake

text: Halorhodospira halochloris

text: cell culture

characteristic: sample type

text: DSM 1059

text: Microbe sample from Halorhodospira halochloris

text: type strain of Ectothiorhodospira halochloris

characteristic: type material


DSM 2110

characteristic: External Id

text: live

text: Microbe, viral or environmental

text: Egypt: Wadi Natrun

text: Imhoff 51/20

text: soda lake

characteristic: isolation source

text: Halorhodospira abdelmalekii

characteristic: organism

text: cell culture

text: DSM 2110

text: Microbe sample from Halorhodospira abdelmalekii

characteristic: title

text: type strain of Ectothiorhodospira abdelmalekii


text: University of Maryland School of Medicine

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Homo sapiens

characteristic: host

text: aspergillosis

characteristic: host disease

text: clinical

text: Aspergillus fumigatus

text: Aspergillus fumigatus conidia only in tissue culture media for 6 hours_rep1

characteristic: unique identifier


characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: SRA accession

text: Homo sapiens

text: aspergillosis

text: clinical

text: Aspergillus fumigatus

characteristic: strain

text: Aspergillus fumigatus conidia only in tissue culture media for 6 hours_rep2


text: live

text: Homo sapiens

text: aspergillosis

text: clinical

text: Aspergillus fumigatus

text: Aspergillus fumigatus conidia only in tissue culture media for 6 hours_rep3


text: live

text: Homo sapiens

text: aspergillosis

text: clinical

text: Aspergillus fumigatus

text: Aspergillus fumigatus + Human cells (A549 cells) for 6 hours_rep1


text: live

text: Homo sapiens

text: aspergillosis

text: clinical

text: Aspergillus fumigatus

text: Aspergillus fumigatus + Human cells (A549 cells) for 6 hours_rep2


text: live

text: Homo sapiens

text: aspergillosis

text: clinical

text: Aspergillus fumigatus

text: Aspergillus fumigatus + Human cells (A549 cells) for 6 hours_rep3


text: live

text: Homo sapiens

text: aspergillosis

text: clinical

text: Aspergillus fumigatus

text: Aspergillus fumigatus conidia only in tissue culture media for 16 hours_rep1


text: live

text: Homo sapiens

text: aspergillosis

text: clinical

text: Aspergillus fumigatus

text: Aspergillus fumigatus conidia only in tissue culture media for 16 hours_rep2


text: live

text: Homo sapiens

text: aspergillosis

text: clinical

text: Aspergillus fumigatus

text: Aspergillus fumigatus conidia only in tissue culture media for 16 hours_rep3


text: live

text: Homo sapiens

text: aspergillosis

text: clinical

text: Aspergillus fumigatus

text: Aspergillus fumigatus + Human cells (A549 cells) for 16 hours_rep1


text: live

text: Homo sapiens

text: aspergillosis

text: clinical

text: Aspergillus fumigatus

text: Aspergillus fumigatus + Human cells (A549 cells) for 16 hours_rep2


text: live

text: Homo sapiens

text: aspergillosis

text: clinical

text: Aspergillus fumigatus

text: Aspergillus fumigatus + Human cells (A549 cells) for 16 hours_rep3


text: Biochemistry and Molecular Biology, Indiana University School of Medicine

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: cell line

text: Anti-FLAG M2 affinity agarose (Sigma-Aldrich, cat. A2220).

characteristic: chip resin

text: FLAG-tagged SETMAR(R371A)

characteristic: genotype/variation

text: Homo sapiens


characteristic: External Id

text: live

text: Generic

text: FLAG-tagged SETMAR(wt)

text: Homo sapiens

characteristic: organism


text: veterinary clinical/research| other animal

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: Translational Genomics Research Institute

characteristic: collected by

characteristic: collection date

text: Escherichia

characteristic: genus

text: USA:AZ

characteristic: geo loc name

text: stool (Cervus canadensis)

characteristic: isolation source

text: cervus canadensis:NCBITAXON_1574408, feces:UBERON_0001988

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type

text: coli

characteristic: species

text: Pathogen: environmental/food/other sample from Escherichia coli

characteristic: title


text: fish

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

text: HI

text: Listeria

text: Thailand

text: frozen marlin cube fish

text: fish (frozen):FOODON_03301083|marlin:FOODON_03411243

text: Listeria monocytogenes

text: food

text: monocytogenes

characteristic: strain

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


characteristic: External Id

text: dairy

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

characteristic: ProjectAccession

text: environmental/food/other

text: South Carolina Department of Health and Environmental Control

text: Listeria

text: USA:SC

text: raw cow milk

text: cow milk (raw):FOODON_03307455

text: Listeria monocytogenes

characteristic: organism

text: food

text: monocytogenes


text: fish

text: live

characteristic: PublicAccession

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

characteristic: fda lab id

text: Salmonella

characteristic: genus

text: Viet Nam

characteristic: geo loc name

text: frozen silver barb fish

text: fish (frozen):FOODON_03301083|silver barb:FOODON_03414853

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Northeast Food and Feed Laboratory

characteristic: sequenced by

text: food

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: environmental-factory/production facility

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: environmental swab sponge

characteristic: isolation source

text: Salmonella enterica

text: environmental

characteristic: source type

text: enterica

characteristic: species

characteristic: title


characteristic: External Id

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: ProjectAccession

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:NC

text: environmental swab sponge

text: Salmonella enterica

text: environmental

text: enterica

characteristic: strain


text: live

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:NC

characteristic: geo loc name

text: environmental swab sponge

text: Salmonella enterica

characteristic: organism

text: environmental

text: enterica


text: animal feed

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: finished feed

characteristic: isolation source

text: finished product:CURATION_0001404| food product for animal:FOODON_03309997

characteristic: ontological term

text: Salmonella enterica

text: environmental

characteristic: source type

text: enterica


characteristic: External Id

text: animal feed

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: meat feed

text: meat food product:foodon_00001006, food product for animal:foodon_03309997

text: Salmonella enterica

text: environmental

text: enterica

characteristic: species

characteristic: title


text: vegetable row crops (leafy)

characteristic: IFSAC Category

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: ProjectAccession

characteristic: PublicAccession

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: raw red chard

text: food (raw):FOODON_03311126, swiss chard (raw):FOODON_03306698

text: Salmonella enterica

text: food

text: enterica

characteristic: strain


text: clinical/research

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:IN

characteristic: geo loc name

text: Salmonella enterica

characteristic: organism

text: enterica


characteristic: External Id

text: sub-tropical fruit

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: description

characteristic: fda lab id

text: USA:WA

text: avocado

characteristic: isolation source

text: avocado (whole, raw):foodon_03305236

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

characteristic: source type


text: sub-tropical fruit

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

text: FDA

text: 841045 3-RS 1

text: USA:AZ

text: hass avocado

text: hass avocado:FOODON_00002982

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: strain

characteristic: title


characteristic: External Id

text: sub-tropical fruit

characteristic: IFSAC+ Category

text: live

text: environmental/food/other

text: FDA

characteristic: collection date

text: 841045 3-R1

text: USA:AZ

characteristic: geo loc name

text: hass avocado

text: hass avocado:FOODON_00002982

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food


text: sub-tropical fruit

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: description

text: 841045-3 RS 11

characteristic: fda lab id

text: USA:AZ

text: hass avocado

text: hass avocado:FOODON_00002982

text: Listeria monocytogenes

text: GenomeTrakr

text: food


text: sub-tropical fruit

text: live

text: environmental/food/other

text: FDA

text: 841045 4-RS 21

text: USA:AZ

text: hass avocado

characteristic: isolation source

text: hass avocado:FOODON_00002982

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

characteristic: source type


text: sub-tropical fruit

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

text: FDA

text: 841045-3 RS 16

text: USA:AZ

text: hass avocado

text: hass avocado:FOODON_00002982

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: strain


characteristic: External Id

text: sub-tropical fruit

characteristic: IFSAC+ Category

text: live

text: environmental/food/other

text: FDA

characteristic: collection date

text: 841045-4 R 6

text: USA:AZ

characteristic: geo loc name

text: hass avocado

text: hass avocado:FOODON_00002982

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: title


text: sub-tropical fruit

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: description

text: 841045-4 RS 17

text: USA:AZ

text: hass avocado

text: hass avocado:FOODON_00002982

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food


text: sub-tropical fruit

text: live

text: environmental/food/other

text: FDA

text: 851203 3-R1

characteristic: fda lab id

text: USA:AZ

text: fresh raw whole hass avocado

characteristic: isolation source

text: avocado (whole, raw):FOODON_03305236|hass avocado:FOODON_00002982|food (fresh):FOODON_00002457

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food


text: sub-tropical fruit

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

text: FDA

text: 870420 S18

text: Mexico

text: avocado

text: avocado (whole, raw):foodon_03305236

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


characteristic: External Id

text: sub-tropical fruit

characteristic: IFSAC+ Category

text: live

text: environmental/food/other

text: FDA

characteristic: collection date

text: Mexico

characteristic: geo loc name

text: avocado

text: avocado (whole, raw):foodon_03305236

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: strain


text: sub-tropical fruit

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: FDA

characteristic: collected by

characteristic: description

text: 874038 Comp 1

text: USA:FL

text: avocado

text: avocado (whole, raw):FOODON_03305236

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: title


text: sub-tropical fruit

text: live

text: environmental/food/other

text: FDA

text: 889221 Comp

characteristic: fda lab id

text: Mexico

text: avocado

characteristic: isolation source

text: avocado (whole, raw):foodon_03305236

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

characteristic: project name

text: food


text: sub-tropical fruit

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

characteristic: SRA accession

text: FDA

text: 874038 Sub 3

text: USA:FL

text: avocado

text: avocado (whole, raw):FOODON_03305236

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: sequenced by

text: food


characteristic: External Id

text: sub-tropical fruit

characteristic: IFSAC+ Category

text: live

text: environmental/food/other

text: FDA

characteristic: collection date

text: 870420 S16

text: Mexico

characteristic: geo loc name

text: avocado

text: avocado (whole, raw):foodon_03305236

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


text: sub-tropical fruit

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: description

text: 870420 S17

text: Mexico

text: avocado

text: avocado (whole, raw):foodon_03305236

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: strain


text: sub-tropical fruit

text: live

text: environmental/food/other

text: FDA

text: 851203 3-RS 6

characteristic: fda lab id

text: USA:AZ

text: fresh raw whole hass avocado

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food

characteristic: title


text: sub-tropical fruit

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

characteristic: SRA accession

text: environmental/food/other

text: FDA

text: 851203 3-RS 1

text: USA:AZ

text: fresh raw whole hass avocado

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: food


characteristic: External Id

text: sub-tropical fruit

characteristic: IFSAC+ Category

text: live

text: FDA

characteristic: collection date

text: 867060 Comp 1

text: USA:FL

characteristic: geo loc name

text: avocado

text: avocado (whole, raw):FOODON_03305236

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: sequenced by

text: food


text: sub-tropical fruit

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: FDA

characteristic: collected by

characteristic: description

text: 864954 -9

text: USA:FL

text: avocado

text: avocado (whole, raw):FOODON_03305236

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


text: sub-tropical fruit

text: live

text: FDA

text: 864954 -3

characteristic: fda lab id

text: USA:FL

text: avocado

characteristic: isolation source

text: avocado (whole, raw):FOODON_03305236

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food

characteristic: strain


text: sub-tropical fruit

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: FDA

text: 867060 Sub 4

text: USA:FL

text: avocado

text: avocado (whole, raw):FOODON_03305236

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: title


characteristic: External Id

text: sub-tropical fruit

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: environmental/food/other

text: FDA

characteristic: collection date

text: 870170 S20

text: Mexico

characteristic: geo loc name

text: avocado

text: avocado (whole, raw):foodon_03305236

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food


text: sub-tropical fruit

characteristic: INSDC secondary accession

text: live

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: description

text: 870420 C4-1

characteristic: fda lab id

text: Mexico

text: avocado

characteristic: isolation source

text: avocado (whole, raw):foodon_03305236

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

text: food

characteristic: source type


text: sub-tropical fruit

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: environmental/food/other

text: FDA

text: 870420 C4

text: Mexico

text: avocado

text: avocado (whole, raw):foodon_03305236

text: Listeria monocytogenes

characteristic: organism

text: GenomeTrakr

text: food

characteristic: strain


characteristic: External Id

text: Shanghai Chenshan Botanical Garden

characteristic: INSDC center name

text: live

text: Plant

characteristic: NCBI submission model

characteristic: SRA accession

text: China:Zhejiang

text: Quercus hypargyrea

text: leaf

characteristic: tissue

text: Plant sample from Quercus hypargyrea

characteristic: title


text: other animal

characteristic: IFSAC+ Category

characteristic: INSDC secondary accession

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: FDA

characteristic: collected by

characteristic: collection date

text: Listeria

characteristic: genus

text: USA:MD

characteristic: geo loc name

text: insect

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: animal

text: monocytogenes

characteristic: species


characteristic: External Id

text: Dr. Millie Georgiadis, Biochemistry and Molecular Biology, Indiana University School of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

characteristic: cell line

text: Homo sapiens

characteristic: organism

text: HEK293T cells

text: WT SETMAR 4

characteristic: vector


characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: Homo sapiens

text: HEK293T cells

text: WT SETMAR 3

characteristic: title


text: live

text: Generic

text: Homo sapiens

text: HEK293T cells

text: WT SETMAR 2


text: live

text: Generic

text: Homo sapiens

text: HEK293T cells

text: WT SETMAR 1


text: live

text: Generic

text: Homo sapiens

text: HEK293T cells

text: Void 4


text: live

text: Generic

text: Homo sapiens

text: HEK293T cells

text: Void 3


text: live

text: Generic

text: Homo sapiens

text: HEK293T cells

text: Void 2


text: live

text: Generic

text: Homo sapiens

text: HEK293T cells

text: Void 1


text: Immunology and Functional Genomics, Centro Cardiologico Monzino IRCCS

text: live

text: Generic

text: Italy

characteristic: country of origin

text: Homo sapiens

text: male

characteristic: sex

text: Peripheral blood

text: Whole blood

characteristic: tissue


text: live

text: Generic

text: Italy

text: Homo sapiens

text: female

text: Peripheral blood

text: Whole blood


Planctomycetes bacterium NORP40

text: University of Southern California

text: live

text: Microbe, viral or environmental

text: Ship board science party on R/V Merian

characteristic: collected by

characteristic: collection date

text: 70-332 mbsf

characteristic: depth

text: Microbial genome binned from reads available as part of BioProject PRJNA391950

characteristic: description

text: marine biome

characteristic: env biome

text: TRUE

characteristic: environmental sample

text: Atlantic Ocean: North Pond

characteristic: geo loc name

characteristic: isolate

text: marine subsurface aquifer

characteristic: isolation source

text: marine metagenome

characteristic: metagenome source

text: TRUE

characteristic: metagenomic

text: This BioSample is a metagenomic assembly obtained from the North Pond (2012-2014) metagenomes from BioSamples: SAMN07571246, SAMN07571245, SAMN07571244, SAMN07571243, SAMN07571242, SAMN07571241, SAMN07571240, SAMN07571238, SAMN07571237, SAMN07571236, SAMN07571235, SAMN07571234, SAMN07571233, SAMN07571232, SAMN07571231, SAMN07571230, SAMN03458689, SAMN03458685, SAMN03458688, SAMN03458686.

characteristic: note

text: Planctomycetota bacterium

text: metagenomic assembly

characteristic: sample type

text: 195 metagenome-assembled genomes from a cold, oxic subseafloor aquifer


Planctomycetes bacterium NORP49

characteristic: External Id

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Ship board science party on R/V Merian

text: 70-332 mbsf

text: marine biome

text: TRUE

text: Atlantic Ocean: North Pond

text: marine subsurface aquifer

text: marine metagenome

text: TRUE

text: Planctomycetota bacterium

characteristic: organism

text: metagenomic assembly

characteristic: title


Planctomycetes bacterium NORP80

text: University of Southern California

text: live

text: Microbe, viral or environmental

text: Ship board science party on R/V Merian

characteristic: collected by

characteristic: collection date

text: 70-332 mbsf

characteristic: depth

characteristic: description

text: marine biome

characteristic: env biome

text: TRUE

characteristic: environmental sample

text: Atlantic Ocean: North Pond

text: marine subsurface aquifer

text: marine metagenome

text: TRUE

text: Planctomycetota bacterium

text: metagenomic assembly


Planctomycetes bacterium NORP165

text: University of Southern California

text: live

text: Microbe, viral or environmental

text: Ship board science party on R/V Merian

text: 70-332 mbsf

text: marine biome

text: TRUE

text: Atlantic Ocean: North Pond

characteristic: geo loc name

characteristic: isolate

text: marine subsurface aquifer

characteristic: isolation source

text: marine metagenome

characteristic: metagenome source

text: TRUE

characteristic: metagenomic

characteristic: note

text: Planctomycetota bacterium

text: metagenomic assembly


Hunua truncata tree 2

characteristic: External Id

text: Landcare Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: SRA accession

text: New Zealand: Hunua Ranges, Workman Track

text: Nothofagus truncata

characteristic: host

text: living leaf

text: 37.125 S 175.2217 E

characteristic: lat lon

text: leaf metagenome

text: 454 run 4

characteristic: samp mat process

text: Hunua F. truncata tree 2

text: Metagenome or environmental sample from leaf metagenome


Hunua truncata tree 3

text: Landcare Research

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: collection date

text: Nothofagus truncata

text: living leaf

text: 37.125 S 175.2217 E

text: leaf metagenome

characteristic: organism

text: 454 run 4

text: Hunua F. truncata tree 3

characteristic: title


Site3 fusca tree 2

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

characteristic: geo loc name

text: Nothofagus fusca

text: living leaf

characteristic: isolation source

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 1

text: Site 3 F. fusca tree 2


Site3 fusca tree 3

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus fusca

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 1

text: Site 3 F. fusca tree 3


Site3 fusca tree 4

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus fusca

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 1

text: Site 3 F. fusca tree 4


Site3 menziesii tree 2

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus menziesii

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 1

text: Site 3 L. menziesii tree 2


Site3 menziesii tree 3

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus menziesii

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 1

text: Site 3 L. menziesii tree 3


Site3 menziesii tree 4

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus menziesii

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 1

text: Site 3 L. menziesii tree 4


Site3 solandri tree 2

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus solandri

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 1

text: Site 3 F. solandri tree 2


Site3Run2 fusca tree 3

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus fusca

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 2

text: Site 3 454 Run 2 F. fusca tree 3


Site3Run2 fusca tree 4

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus fusca

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 2

text: Site 3 454 Run 2 F. fusca tree 4


Site3Run2 menziesii tree 2

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus menziesii

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 2

text: Site 3454 Run 2 L. menziesii tree 2


Site3Run2 menziesii tree 3

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus menziesii

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 2

text: Site 3454 Run 2 L. menziesii tree 3


Site3Run2 menziesii tree 4

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus menziesii

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 2

text: Site 3454 Run 2 L. menziesii tree 4


Site3Run2 solandri tree 2

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Rangataua Reserve

text: Nothofagus solandri

text: living leaf

text: 39.41667 S 175.4533 E

text: leaf metagenome

text: 454 run 2

text: Site 3 454 Run 2 F. solandri tree 2


Site4 fusca tree 2

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Ohakune Mountain Rd

text: Nothofagus fusca

text: living leaf

text: 39.36333 S 175.4683 E

text: leaf metagenome

text: 454 run 3

text: Site 4 F. fusca tree 2


Site4 fusca tree 3

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Ohakune Mountain Rd

text: Nothofagus fusca

text: living leaf

text: 39.36333 S 175.4683 E

text: leaf metagenome

text: 454 run 3

text: Site 4 F. fusca tree 3


Site4 fusca tree 4

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Ohakune Mountain Rd

text: Nothofagus fusca

text: living leaf

text: 39.36333 S 175.4683 E

text: leaf metagenome

text: 454 run 3

text: Site 4 F. fusca tree 4


Site4 menziesii tree 2

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Ohakune Mountain Rd

text: Nothofagus menziesii

text: living leaf

text: 39.36333 S 175.4683 E

text: leaf metagenome

text: 454 run 3

text: Site 4 L. menziesii tree 2


Site4 menziesii tree 3

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Ohakune Mountain Rd

text: Nothofagus menziesii

text: living leaf

text: 39.36333 S 175.4683 E

text: leaf metagenome

text: 454 run 3

text: Site 4 L. menziesii tree 3


Site4 menziesii tree 4

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Ohakune Mountain Rd

text: Nothofagus menziesii

text: living leaf

text: 39.36333 S 175.4683 E

text: leaf metagenome

text: 454 run 3

text: Site 4 L. menziesii tree 4


Site4 solandri tree 2

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Ohakune Mountain Rd

text: Nothofagus solandri

text: living leaf

text: 39.36333 S 175.4683 E

text: leaf metagenome

text: 454 run 3

text: Site 4 F. solandri tree 2


Site4 solandri tree 3

text: Landcare Research

text: live

text: Metagenome or environmental

text: New Zealand: Ohakune Mountain Rd

text: Nothofagus solandri

text: living leaf

text: 39.36333 S 175.4683 E

text: leaf metagenome

text: 454 run 3

text: Site 4 F. solandri tree 3


text: clinical/research| human

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: clinical/host-associated

text: PA Health Department

characteristic: collected by

text: USA:PA

text: Homo sapiens

text: biological fluid and or tissue

text: biological fluid:CURATION_0001460| interstitial fluid:UBERON_0000913

characteristic: ontological term

text: Shigella sonnei

text: human

characteristic: source type

characteristic: strain

text: Pathogen: clinical or host-associated sample from Shigella sonnei


characteristic: External Id

text: clinical/research| human

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: clinical/host-associated

text: PA Health Department

text: USA:PA

text: Homo sapiens

text: biological fluid and or tissue

text: Shigella sonnei

text: human


text: dairy

text: live

characteristic: INSDC status

characteristic: ProjectAccession

characteristic: PublicAccession

characteristic: SRA accession

text: environmental/food/other

text: New York State Department of Agriculture and Markets

text: Listeria

characteristic: genus

text: USA:NY

text: white cheese

text: cheese white:FOODON_03316541

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: food

text: monocytogenes

characteristic: species

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: environmental

characteristic: IFSAC+ Category

text: live

text: environmental/food/other

characteristic: collected by

characteristic: collection date

text: Listeria

text: USA:NY

characteristic: geo loc name

text: sponge

characteristic: isolation source

text: Listeria monocytogenes

characteristic: organism

text: environmental

text: monocytogenes

characteristic: title


characteristic: External Id

text: dairy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: environmental/food/other

text: Listeria

text: USA:NY

text: raw milk

text: food (raw):FOODON_03311126|milk:UBERON_0001913

characteristic: ontological term

text: Listeria monocytogenes

text: food

characteristic: source type

text: monocytogenes

characteristic: strain


text: dairy

characteristic: IFSAC Category

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: ProjectAccession

characteristic: PublicAccession

characteristic: SRA accession

text: NYAG

text: Listeria

characteristic: genus

text: USA:NY

text: raw milk cheese monterey jack

text: jack (raw):FOODON_03308033, monterey cheese:FOODON_03302918, milk:UBERON_0001913

text: Listeria monocytogenes

text: food

text: monocytogenes


text: multi-ingredient| fish

characteristic: IFSAC+ Category

text: live

text: environmental/food/other

characteristic: collected by

characteristic: collection date

text: Listeria

text: USA:NY

characteristic: geo loc name

text: salad tuna

characteristic: isolation source

text: tuna salad:FOODON_03308735

text: Listeria monocytogenes

characteristic: pfge primary enzyme pattern

text: food

text: monocytogenes

characteristic: species


characteristic: External Id

text: multi-ingredient, chicken

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: NYAG

text: Listeria

text: USA:NY

text: deli salad chicken

text: chicken salad:FOODON_03306092

characteristic: ontological term

text: Listeria monocytogenes

characteristic: organism

text: food

text: monocytogenes

characteristic: title


Site3Run2 fusca tree 2

text: Landcare Research

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

text: New Zealand: Rangataua Reserve

text: Nothofagus fusca

characteristic: host

text: living leaf

text: 39.41667 S 175.4533 E

characteristic: lat lon

text: leaf metagenome

text: 454 run 2

characteristic: samp mat process

text: Site 3 454 Run 2 F. fusca tree 2


Acidovorax ebreus LS-1

text: Guangdong Institute of Eco-Environmental and Soil Sciences

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

characteristic: collection date

text: China:Guangzhou

characteristic: geo loc name

text: paddy soil

characteristic: isolate

text: anoxic

text: [Acidovorax] ebreus

text: single cell

characteristic: sample type

text: Transcriptome analysis of Nitrate-reducing Fe(II)-oxidizing bacteria Acidovorax ebreus LS-1 isolated from a Paddy Soil Field


characteristic: External Id

text: Sichuan Agricultural University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: Jianyang Daer Goat

characteristic: breed

characteristic: dev stage

text: Capra hircus

text: rumen

text: gut metagenome

text: not determined

characteristic: sex

text: rumen sample 1 from E60 gaot


text: Sichuan Agricultural University

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Jianyang Daer Goat

text: Capra hircus

text: rumen

text: gut metagenome

characteristic: organism

text: not determined

text: Rumen sample from E135 goat

characteristic: title


text: Institute of Agricultural c and Regional Planning, Chinese Academy of Agricultural Sciences

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: China:Binhai, Tianjin

text: saline alkaline soil

characteristic: isolation source

text: Halorubrum salipaludis

text: mixed culture

characteristic: strain

text: 33 centigrade

characteristic: temp

text: Microbe sample from Halorubrum salipaludis

text: type strain of Halorubrum salipaludis

characteristic: type material


Chlorobium sp 445

characteristic: External Id

text: Bose Institute

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: TRUE

characteristic: environmental sample

text: India: Jammu and Kashmir, Ladakh, Western Puga Valley

characteristic: geo loc name

characteristic: isolate

text: Geothermal hot spring

text: hot springs metagenome

characteristic: metagenome source

text: TRUE

characteristic: metagenomic

text: This BioSample is a metagenomic assembly obtained from the hot springs metagenome BioSample: SAMN07488836

characteristic: note

text: [Chlorobium] sp. 445

text: metagenomic assembly

characteristic: sample type

text: Microbe sample of a genome bin from hot springs metagenome


text: NIEHS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: HESC

characteristic: cell type

text: EPC day 3

characteristic: epc treatment

text: Homo sapiens

characteristic: organism

text: non-targeting siRNA (siNT)

characteristic: sirna treatment

text: HESC 30 EPC siNT

text: Primary human endometrial stromal cells

characteristic: tissue

text: HESC 30 EPC siNT (FD39854)


characteristic: External Id

text: NIEHS

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: HESC

text: EPC day 3

text: Homo sapiens

text: siRNA targeting WNK1 (siWNK1)

text: HESC 42 EPC siWNK1

text: Primary human endometrial stromal cells

text: HESC 42 EPC siWNK1 (FD39928)

characteristic: title


text: NIEHS

text: live

text: Generic

text: HESC

text: EPC day 3

text: Homo sapiens

text: siRNA targeting WNK1 (siWNK1)

text: HESC 34 EPC siWNK1

text: Primary human endometrial stromal cells

text: HESC 34 EPC siWNK1 (FD39851)


text: NIEHS

text: live

text: Generic

text: HESC

text: EPC day 3

text: Homo sapiens

text: siRNA targeting WNK1 (siWNK1)

text: HESC 30 EPC siWNK1

text: Primary human endometrial stromal cells

text: HESC 30 EPC siWNK1 (FD39855)


text: NIEHS

text: live

text: Generic

text: HESC

text: EPC day 3

text: Homo sapiens

text: non-targeting siRNA (siNT)

text: HESC 42 EPC siNT

text: Primary human endometrial stromal cells

text: HESC 42 EPC siNT (FD39846)


text: NIEHS

text: live

text: Generic

text: HESC

text: EPC day 3

text: Homo sapiens

text: non-targeting siRNA (siNT)

text: HESC 34 EPC siNT

text: Primary human endometrial stromal cells

text: HESC 34 EPC siNT (FD39850)


text: vegetable row crops (leafy)

characteristic: IFSAC+ Category

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:OH

characteristic: geo loc name

text: finished kale

characteristic: isolation source

text: Salmonella enterica

text: food

characteristic: source type

text: enterica

characteristic: species

characteristic: strain

text: Pathogen: environmental/food/other sample from Salmonella enterica


text: animal feed

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: finished feed

text: finished product:CURATION_0001404| food product for animal:FOODON_03309997

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: environmental

text: enterica


characteristic: External Id

text: nuts

characteristic: IFSAC+ Category

text: live

characteristic: INSDC status

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:GA

text: finished nut

text: Salmonella enterica

text: food

text: enterica

characteristic: title


text: clinical/research

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:CO

text: bone

text: bone element:UBERON_0001474

text: Salmonella enterica

text: enterica


text: environmental

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

characteristic: geo loc name

text: environmental swab

characteristic: isolation source

text: environmental (swab or sampling):GENEPIO_0001732

text: Salmonella enterica

text: environmental

characteristic: source type

text: enterica

characteristic: species


text: chicken

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:OH

text: finished chicken

text: Salmonella enterica

text: food

text: enterica

characteristic: strain


text: clinical/research

characteristic: INSDC secondary accession

text: live

characteristic: SRA accession

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:IN

characteristic: ontological term

text: Salmonella enterica

characteristic: organism

text: enterica


characteristic: External Id

text: environmental

characteristic: IFSAC+ Category

text: live

characteristic: INSDC status

text: environmental/food/other

text: FDA Contracted Laboratory

text: Salmonella

text: USA:CA

text: fertilizer

text: Salmonella enterica

text: environmental

text: enterica

characteristic: title


text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: FDA Contracted Laboratory

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:CA

text: Finished Tomatoes

text: Salmonella enterica

text: enterica


text: environmental| chicken

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: environmental/food/other

text: Texas Department of State Health Services

characteristic: collected by

text: Campylobacter

text: USA:TX

characteristic: geo loc name

text: whole chicken rinse

characteristic: isolation source

text: chicken (whole):FOODON_00002704| rinse:CURATION_0001629

text: Campylobacter coli

text: environmental

characteristic: source type

text: coli

characteristic: species

text: Pathogen: environmental/food/other sample from Campylobacter coli


ancestor

characteristic: External Id

text: Wageningen University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: SRA accession

text: Jianhua Zhang

text: Aspergillus fumigatus strains showing cross resistance against medical triazoles after evolution on environmental azoles

characteristic: description

text: Netherlands

text: Homo sapiens

characteristic: host

text: Aspergillosis

characteristic: host disease

text: wild type

characteristic: isolate

text: field sample

text: 51.96 N 5.65 E

characteristic: lat lon

text: Aspergillus fumigatus

characteristic: organism

text: Pathogen: clinical or host-associated sample from Aspergillus fumigatus


text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

characteristic: INSDC status

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: Micallef

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:MD

text: river water

text: river water:ENVO_01000599

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: environmental

text: enterica

characteristic: strain

characteristic: title


characteristic: External Id

text: environmental-water

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: SRA accession

text: environmental/food/other

text: HI

characteristic: collected by

text: Salmonella

text: USA:HI

characteristic: geo loc name

text: sewage

characteristic: isolation source

text: Mbandaka

characteristic: serovar

text: environmental

characteristic: source type

text: enterica

characteristic: species

text: enterica

characteristic: sub species

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Mbandaka


text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

characteristic: INSDC status

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: HI

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:HI

text: sewage

characteristic: ontological term

text: Muenchen

text: environmental

text: enterica

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Muenchen


characteristic: External Id

text: environmental-water

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: environmental/food/other

text: HI

text: Salmonella

text: USA:HI

text: sewage

text: Enteritidis

text: environmental

text: enterica

characteristic: strain

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Enteritidis

characteristic: title


text: environmental-water

text: live

characteristic: SRA accession

text: environmental/food/other

text: HI

characteristic: collected by

text: Salmonella

text: USA:HI

characteristic: geo loc name

text: sewage

characteristic: isolation source

text: Agona

characteristic: serovar

text: environmental

characteristic: source type

text: enterica

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Agona


text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

characteristic: INSDC status

characteristic: ProjectAccession

text: environmental/food/other

text: HI

text: Salmonella

text: USA:HI

text: sewage

text: Derby

text: environmental

text: enterica

characteristic: species

text: enterica

characteristic: sub species

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Derby


characteristic: External Id

text: environmental-water

characteristic: INSDC first public

text: live

characteristic: PublicAccession

text: environmental/food/other

text: HI

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:HI

text: sewage

characteristic: ontological term

text: Stanley

text: environmental

text: enterica

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Stanley


text: environmental-water

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: SRA accession

text: environmental/food/other

text: HI

characteristic: collected by

text: Salmonella

text: USA:HI

text: sewage

text: Amager

text: environmental

text: enterica

characteristic: strain

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Amager

characteristic: title


text: environmental-water

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: environmental/food/other

text: HI

text: Salmonella

text: USA:HI

characteristic: geo loc name

text: sewage

characteristic: isolation source

text: Infantis

characteristic: serovar

text: environmental

characteristic: source type

text: enterica

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Infantis


characteristic: External Id

text: environmental-water

characteristic: INSDC first public

text: live

characteristic: INSDC status

characteristic: ProjectAccession

text: environmental/food/other

text: HI

text: Salmonella

text: USA:HI

text: sewage

text: Senftenberg

text: environmental

text: enterica

characteristic: species

text: enterica

characteristic: sub species

text: Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Senftenberg


text: the Ohio state university

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: collection date

characteristic: description

text: USA:Alabama

text: Haemorhous mexicanus

characteristic: host

characteristic: isolate

text: Mycoplasmoides gallisepticum

characteristic: organism

text: Not_biological replicate_1

characteristic: replicate

text: Culture

characteristic: sample type


text: the Ohio state university

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: USA:Alabama

characteristic: geo loc name

text: Haemorhous mexicanus

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_2

text: Culture

characteristic: title


characteristic: External Id

text: the Ohio state university

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: USA:Alabama

text: Spinus tristis

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_3

text: Culture


text: the Ohio state university

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: USA:Alabama

text: Haemorhous mexicanus

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_4

text: Culture


text: the Ohio state university

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

text: USA:Alabama

text: Haemorhous mexicanus

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_5

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: USA:Alabama

text: Haemorhous mexicanus

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_6

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: USA:Alabama

text: Haemorhous mexicanus

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_7

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

characteristic: description

text: USA:Alabama

text: Haemorhous mexicanus

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_8

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: USA:Alabama

text: Haemorhous mexicanus

characteristic: host

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_9

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: USA:Alabama

text: Haemorhous mexicanus

characteristic: isolate

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_10

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: USA:Alabama

text: Haemorhous mexicanus

text: Mycoplasmoides gallisepticum

characteristic: organism

text: Not_biological replicate_11

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: USA:Georgia

text: R

text: Mycoplasmoides gallisepticum

text: Culture

text: R


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: USA:California

text: Mycoplasmoides gallisepticum

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: USA

text: Mycoplasmoides gallisepticum

text: A5969_biological replicate 1

characteristic: replicate

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: USA

text: Mycoplasmoides gallisepticum

text: A5969_biological replicate 2

text: Culture

characteristic: sample type


MG41_CA_F strain

text: the Ohio state university

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: USA:California

text: Chicken

text: F strain _NCSU

text: Mycoplasmoides gallisepticum

text: F strain_biological replicate 1

text: Culture

text: F strain _NCSU


MG42_CA_F strain

text: the Ohio state university

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: USA:California

text: Chicken

text: Mycoplasmoides gallisepticum

text: F strain_biological replicate 2

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: Australia

characteristic: geo loc name

text: ts-ll single colony

text: Mycoplasmoides gallisepticum

text: TS-11_biological replicate 1

text: Culture

text: ts-ll single colony


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: Australia

text: TS-11 liquid culture

text: Mycoplasmoides gallisepticum

text: TS-11_biological replicate 2

text: Culture

text: TS-11 liquid culture

characteristic: title


characteristic: External Id

text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: 6_85 vaccine

text: Mycoplasmoides gallisepticum

text: Culture

text: 6_85 vaccine


text: the Ohio state university

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: USA:Vrigina

text: Mycoplasmoides gallisepticum

text: Culture


text: the Ohio state university

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: David ley

characteristic: biomaterial provider

text: David ley

characteristic: collected by

text: USA:Newyork

text: North Carolina State university

characteristic: identified by

text: Mycoplasmoides gallisepticum

text: Culture


text: the Ohio state university

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: David ley

text: David ley

characteristic: collection date

text: USA:south Carolina

characteristic: host

text: North Carolina State university

text: Mycoplasmoides gallisepticum

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: David ley

text: David ley

text: USA:North Carolina

text: North Carolina State university

characteristic: isolate

text: Mycoplasmoides gallisepticum

characteristic: organism

text: Culture

characteristic: sample type


text: the Ohio state university

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: David ley

text: David ley

characteristic: description

text: USA:North Carolina

characteristic: geo loc name

text: North Carolina State university

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_12

characteristic: replicate

text: Culture


characteristic: External Id

text: the Ohio state university

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: David ley

text: David ley

text: USA:North Carolina

text: North Carolina State university

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_13

text: Culture

characteristic: title


text: the Ohio state university

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: David ley

characteristic: biomaterial provider

text: David ley

characteristic: collected by

text: USA:North Carolina

text: North Carolina State university

characteristic: identified by

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_14

text: Culture


text: the Ohio state university

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: David ley

text: David ley

characteristic: collection date

text: USA:North Carolina

characteristic: host

text: North Carolina State university

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_15

text: Culture


text: the Ohio state university

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: David ley

text: David ley

text: USA:connicticut

text: Chicken

text: North Carolina State university

characteristic: isolate

text: Mycoplasmoides gallisepticum

characteristic: organism

text: Culture

characteristic: sample type


text: the Ohio state university

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: David ley

text: David ley

text: USA:Arkansas

characteristic: geo loc name

text: North Carolina State university

text: Mycoplasmoides gallisepticum

text: Culture


characteristic: External Id

text: the Ohio state university

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: David ley

text: David ley

text: USA:Vrigina

text: North Carolina State university

text: Mycoplasmoides gallisepticum

text: Culture


text: the Ohio state university

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: David ley

text: David ley

text: USA:Minisota

text: North Carolina State university

text: Mycoplasmoides gallisepticum

text: Culture

characteristic: title


text: the Ohio state university

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Janet Bradbury

characteristic: biomaterial provider

text: Janet Bradbury

text: United Kingdom

text: University of liverpool

text: Mycoplasmoides gallisepticum

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: Janet Bradbury

text: Janet Bradbury

characteristic: collected by

text: United Kingdom

text: broiler breeder

text: University of liverpool

characteristic: identified by

text: Mycoplasmoides gallisepticum

text: Culture


text: the Ohio state university

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Janet Bradbury

text: Janet Bradbury

text: United Kingdom

text: Turkey

text: University of liverpool

text: Mycoplasmoides gallisepticum

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: Janet Bradbury

text: Janet Bradbury

characteristic: collection date

characteristic: description

text: United Kingdom

text: Chicken

characteristic: host

text: University of liverpool

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_16

characteristic: replicate

text: Culture


text: the Ohio state university

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: Janet Bradbury

text: Janet Bradbury

text: United Kingdom

text: Chicken

text: University of liverpool

characteristic: isolate

text: Mycoplasmoides gallisepticum

characteristic: organism

text: Culture

characteristic: sample type


characteristic: External Id

text: the Ohio state university

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: Janet Bradbury

text: Janet Bradbury

text: United Kingdom

characteristic: geo loc name

text: Chicken

text: University of liverpool

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_17

text: Culture


text: the Ohio state university

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Janet Bradbury

characteristic: biomaterial provider

text: Janet Bradbury

text: United Kingdom

text: Chicken

text: University of liverpool

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_18

text: Culture

characteristic: title


text: the Ohio state university

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Inna Lysnyansky

text: Israel

text: Turkey

text: Mycoplasma Unit at Kimron Veterinary Institute

characteristic: identified by

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_19

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: Inna Lysnyansky

characteristic: collection date

characteristic: description

text: Israel

text: Chicken

characteristic: host

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_20

text: Culture


text: the Ohio state university

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: Inna Lysnyansky

text: Israel

text: Turkey

characteristic: isolate

text: Mycoplasmoides gallisepticum

text: Culture


text: the Ohio state university

text: live

text: Microbe, viral or environmental

text: Inna Lysnyansky

text: Israel

text: Chicken

text: Mycoplasmoides gallisepticum

characteristic: organism

text: Culture

characteristic: sample type


characteristic: External Id

text: the Ohio state university

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Inna Lysnyansky

text: Israel

text: chicken

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_22

characteristic: replicate

text: Culture


text: the Ohio state university

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: Inna Lysnyansky

text: Israel

characteristic: geo loc name

text: chicken

text: Mycoplasmoides gallisepticum

text: Culture


text: the Ohio state university

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Inna Lysnyansky

characteristic: biomaterial provider

text: Israel

text: chicken

text: Mycoplasmoides gallisepticum

text: Not_biological replicate_23

text: Culture

characteristic: title


text: the Ohio state university

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Inna Lysnyansky

text: Jordan

text: chicken

text: Mycoplasmoides gallisepticum

text: Culture


BOTNAR

text: Wageningen University

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: collection date

text: Canada: Quebec, Hull, Dreve du lac des Fees

text: Narcissus

text: Botryotinia narcissicola

text: whole organism

characteristic: strain

text: Microbe sample from Botryotinia narcissicola


Control Simulated Photoperiod sample 1

text: live

text: Model organism or animal

text: 12 weeks after hatching

characteristic: age

text: Nutrigenomics and Microbiomics National Laboratory

text: Aquacultured

text: Guillermo Corona

characteristic: collected by

text: Menidia estor cultured from fertilization until 12 wah, under control simulated photoperiod (12 light: 12 darkness)

characteristic: description

text: Juveniles

characteristic: dev stage

characteristic: genotype

text: Mexico: Morelia

text: Control simulated photoperiod

text: Healthy

text: Aquacultured

characteristic: isolation source

text: 19.6897266 N 101.2524314 W

characteristic: lat lon

text: Chirostoma estor

text: Normal

characteristic: phenotype

text: Tissue sample

text: not determined

characteristic: sex

characteristic: specimen voucher

text: Stored at -80oC upon RNA extraction

text: Fish head

characteristic: tissue

text: Model organism or animal sample from Menidia estor

text: Control Simulated Photoperiod sample 1

characteristic: treatment


Control Simulated Photoperiod sample 2

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: SRA accession

text: 12 weeks after hatching

characteristic: biomaterial provider

text: Aquacultured

text: Guillermo Corona

text: Juveniles

text: Mexico:Morelia

characteristic: geo loc name

text: Control simulated photoperiod

text: Healthy

text: Aquacultured

text: 19.6897266 N 101.2524314 W

text: Chirostoma estor

characteristic: organism

text: Normal

text: Tissue sample

characteristic: sample type

text: not determined

text: Stored at -80oC upon RNA extraction

text: Fish head

characteristic: title

text: Control Simulated Photoperiod sample 2


Control Simulated Photoperiod sample 3

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: 12 weeks after hatching

characteristic: age

text: Aquacultured

text: Guillermo Corona

characteristic: collected by

characteristic: collection date

characteristic: description

text: Juveniles

characteristic: dev stage

characteristic: genotype

text: Mexico: Morelia

text: Control simulated photoperiod

text: Healthy

text: Aquacultured

characteristic: isolation source

text: 19.6897266 N 101.2524314 W

characteristic: lat lon

text: Chirostoma estor

text: Normal

text: Tissue sample

text: not determined

text: Stored at -80oC until RNA extraction

characteristic: strain

text: Fish head

text: Control Simulated Photoperiod sample 3


Continuous Light Photoperiod sample 1

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

text: 12 weeks after hatching

text: Aquacultured

text: Guillermo Corona

text: Menidia estor cultured from fertilization until 12 wah, under continuous light photoperiod (24 light: 0 darkness)

text: Juveniles

text: Mexico: Morelia

text: Continuous light photoperiod

text: Healthy

text: Aquacultured

text: 19.6897266 N 101.2524314 W

text: Chirostoma estor

text: Overgrowth

characteristic: phenotype

text: Tissue sample

text: not determined

characteristic: sex

characteristic: specimen voucher

text: Stored at -80oC until RNA extraction

text: Fish head

characteristic: tissue

text: Continuous Light Photoperiod sample 1

characteristic: treatment


Continuous Light Photoperiod sample 2

characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 12 weeks after hatching

characteristic: age

characteristic: biomaterial provider

text: Aquacultured

text: Guillermo Corona

characteristic: collected by

characteristic: collection date

text: Juveniles

text: Mexico: Morelia

characteristic: geo loc name

text: Continuous light photoperiod

text: Healthy

text: Aquacultured

text: 19.6897266 N 101.2524314 W

text: Chirostoma estor

characteristic: organism

text: Overgrowth

text: Tissue sample

characteristic: sample type

text: not determined

text: Stored at -80oC until RNA extraction

text: Fish head

characteristic: title

text: Continuous Light Photoperiod sample 2


Continuous Light Photoperiod sample 3

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

text: 12 weeks after hatching

text: Aquacultured

text: Guillermo Corona

characteristic: description

text: Juveniles

characteristic: dev stage

characteristic: genotype

text: Mexico: Morelia

text: Continuous light photoperiod

text: Healthy

text: Aquacultured

characteristic: isolation source

text: 19.6897266 N 101.2524314 W

characteristic: lat lon

text: Chirostoma estor

text: Overgrowth

characteristic: phenotype

text: Tissue sample

text: not determined

text: Stored at -80oC until RNA extraction

characteristic: strain

text: Fish head

text: Continuous Light Photoperiod sample 3


text: meat| pig

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC center name

text: live

characteristic: ProjectAccession

characteristic: PublicAccession

characteristic: SRA accession

text: environmental/food/other

text: North Carolina State University | College of Veterinary Medicine | Thakur Molecular Epidemiology Laboratory

characteristic: collected by

characteristic: collection date

text: Campylobacter

characteristic: genus

text: USA:NC

text: pig carcass swab

text: swine:FOODON_03411136, carcass:UBERON_0008979, swab:NCIT_C17627

characteristic: ontological term

text: Campylobacter coli

text: animal

characteristic: source type

text: coli

characteristic: species

text: Pathogen: environmental/food/other sample from Campylobacter coli


characteristic: External Id

text: veterinary clinical/research| pig

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: environmental/food/other

text: Campylobacter

text: USA:NC

characteristic: geo loc name

text: pig mesenteric lymph node

text: mesenteric lymph node:UBERON_0002509, swine:FOODON_03411136

text: Campylobacter coli

characteristic: organism

text: animal

text: coli

characteristic: title


text: veterinary clinical/research| pig

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

characteristic: ProjectAccession

text: environmental/food/other

text: NC State University College of Veterinary Medicine

text: Campylobacter

text: USA:NC

text: live pig swab

characteristic: isolation source

text: swine:FOODON_03411136| swab:NCIT_C17627

text: Campylobacter coli

text: animal

text: coli

characteristic: strain


text: veterinary clinical/research| pig

text: live

characteristic: PublicAccession

characteristic: SRA accession

text: environmental/food/other

characteristic: collected by

characteristic: collection date

text: Campylobacter

characteristic: genus

text: USA:NC

text: feces pig

text: feces:UBERON_0001988, swine:FOODON_03411136

text: Campylobacter coli

text: animal

text: coli


characteristic: External Id

text: environmental

characteristic: INSDC first public

text: live

text: environmental/food/other

text: Campylobacter

text: USA:NC

text: soil

characteristic: ontological term

text: Campylobacter coli

text: environmental

characteristic: source type

text: coli

characteristic: species


text: veterinary clinical/research| pig

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: environmental/food/other

text: Campylobacter

text: USA:NC

characteristic: geo loc name

text: live pig swab

text: swine:FOODON_03411136, swab:NCIT_C17627

text: Campylobacter coli

characteristic: organism

text: animal

text: coli


text: environmental-factory/production facility

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

characteristic: ProjectAccession

text: environmental/food/other

text: Campylobacter

text: USA:NC

text: environmental swab sponge

characteristic: isolation source

text: environmental (swab or sampling):GENEPIO_0001732| environmental sponge:CURATION_0000359

text: Campylobacter coli

text: environmental

text: coli

characteristic: title


text: environmental-water

text: live

characteristic: PublicAccession

characteristic: SRA accession

text: environmental/food/other

characteristic: collected by

characteristic: collection date

text: Campylobacter

text: USA:NC

text: water

text: Campylobacter coli

text: environmental

text: coli

characteristic: strain


characteristic: External Id

text: environmental-water

characteristic: INSDC first public

text: live

text: environmental/food/other

text: Campylobacter

characteristic: genus

text: USA:NC

text: water

characteristic: ontological term

text: Campylobacter coli

text: environmental

characteristic: source type

text: coli


text: meat| pig

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: environmental/food/other

text: Campylobacter

text: USA:NC

characteristic: geo loc name

text: pig carcass swab

text: swine:FOODON_03411136| carcass:UBERON_0008979| swab:NCIT_C17627

text: Campylobacter coli

text: animal

text: coli

characteristic: species


text: veterinary clinical/research| pig

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

characteristic: ProjectAccession

text: environmental/food/other

text: Campylobacter

text: USA:NC

text: feces sow

characteristic: isolation source

text: feces:UBERON_0001988, sow:FOODON_00003333

text: Campylobacter coli

characteristic: organism

text: animal

text: coli


text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: PublicAccession

characteristic: SRA accession

text: environmental/food/other

characteristic: collected by

characteristic: collection date

text: Campylobacter

text: USA:NC

text: environmental swab sponge

text: Campylobacter coli

text: environmental

text: coli

characteristic: title


characteristic: External Id

text: veterinary clinical/research| pig

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: environmental/food/other

text: Campylobacter

characteristic: genus

text: USA:NC

text: feces pig

text: feces:UBERON_0001988| swine:FOODON_03411136

characteristic: ontological term

text: Campylobacter coli

text: animal

characteristic: source type

text: coli

characteristic: strain


name: The genome sequence of Thioclava arenosa CAU 1312

text: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: culture-collection

text: South Korea: Incheon

characteristic: geo loc name

text: Sea sand

text: Pseudothioclava arenosa

text: pure culture

characteristic: sample type

text: CAU 1312

text: Microbe sample from Thioclava arenosa CAU 1312

text: type strain of Thioclava arenosa

characteristic: type material


text: Bioinformatics Section, DIR IT & Bioinformatics, NINDS/NIH

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Paired

characteristic: end-type

text: Homo sapiens

characteristic: organism

characteristic: read length

characteristic: sample group

text: Muscle biopsy

text: Unstranded

characteristic: strand-type

characteristic: total reads


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Paired

text: Homo sapiens

text: Control

text: Muscle biopsy

text: Unstranded

characteristic: title


Planctomycetes bacterium ARS1434

text: University of Southern California

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Tara Oceans Consortium

characteristic: collected by

characteristic: collection date

characteristic: depth

text: marine pelagic biome

characteristic: env biome

characteristic: environmental sample

text: Indian Ocean

characteristic: geo loc name

characteristic: isolate

text: Northwest Arabian Sea Upwelling Province

characteristic: isolation source

text: marine metagenome

characteristic: metagenome source

characteristic: metagenomic

text: This BioSample is a metagenomic assembly obtained from the publically available reads for the TARA Oceans Project deposited in the Sequence Read Archive (SRA) database with runs accessions ERR599064, ERR1711938, ERR1712009, ERR1711965, ERR1712103, ERR868416, ERR598965, ERR1719265, ERR1719386, ERR868358, ERR1719314, ERR1719379, ERR1719235, ERR868374, ERR868441, ERR594412, ERR1719281, ERR1719299, ERR1719335, ERR868450, ERR868472, ERR594357, ERR594380, ERR594381, ERR594383, ERR594387, ERR1712058, ERR1712098, ERR868470, ERR868506

characteristic: note

text: Planctomycetota bacterium

text: metagenomic assembly

text: 2,631 Draft Metagenome-Assembled Genomes from the Global Oceans


Planctomycetes bacterium ARS15

characteristic: External Id

text: University of Southern California

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Tara Oceans Consortium

text: marine pelagic biome

text: Indian Ocean

text: marine metagenome

text: Planctomycetota bacterium

characteristic: organism

text: metagenomic assembly

characteristic: sample type


Planctomycetes bacterium ARS63

text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Tara Oceans Consortium

text: marine pelagic biome

text: Indian Ocean

text: marine metagenome

text: This BioSample is a metagenomic assembly obtained from the publically available reads for the TARA Oceans Project deposited in the Sequence Read Archive (SRA) database with runs accessions ERR599057, ERR599376, ERR599112, ERR599371, ERR599058, ERR599026, ERR599362, ERR599012, ERR599339, ERR598970, ERR599088, ERR599150, ERR594392, ERR599021, ERR599164, ERR599225, ERR599351, ERR598972, ERR599023, ERR599025, ERR594324, ERR594385, ERR598979, ERR599146, ERR594320, ERR598960, ERR599034, ERR598990, ERR599018, ERR599110, ERR594291, ERR594382, ERR594414

text: Planctomycetota bacterium

text: metagenomic assembly

characteristic: title