text: College de France

text: live

text: Viral

text: germline, maturated and deeply maturated-based library mix vs mCherry: selection round 2 (#1)

text: Inovirus M13

text: Viral sample from Inovirus M13


status: PUBLIC

characteristic: External Id

text: College de France

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Viral

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: synthetic recombinant antibodies selected by phage display

characteristic: description

text: germline, maturated and deeply maturated-based library mix vs mCherry: selection round 3 (#1)

tag: attribute

characteristic: isolate

text: Inovirus M13

characteristic: organism

text: Viral sample from Inovirus M13

characteristic: title


text: College de France

text: live

text: Viral

text: germline, maturated and deeply maturated-based library mix vs mCherry: selection round 4 (#1)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: germline, maturated and deeply maturated-based library mix vs mCherry: selection round 1 (#2)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: germline, maturated and deeply maturated-based library mix vs mCherry: selection round 2 (#2)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: germline, maturated and deeply maturated-based library mix vs mCherry: selection round 3 (#2)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: germline, maturated and deeply maturated-based library mix: selection round 2

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: germline, maturated and deeply maturated-based library mix: selection round 2 amplified (#1)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: germline, maturated and deeply maturated-based library mix: selection round 2 amplified (#2)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: tiny library of DNA1-specific and random antibodies: selection round 0 (#1)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: tiny library of DNA1-specific and random antibodies vs DNA1: selection round 1 (#1)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: tiny library of DNA1-specific and random antibodies: selection round 0 (#2)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: tiny library of DNA1-specific and random antibodies vs DNA1: selection round 1 (#2)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: tiny library of DNA1-specific and random antibodies vs magnetic beads: selection round 1 (#2)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: tiny library of DNA2-specific and random antibodies: selection round 0

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: tiny library of DNA2-specific and random antibodies vs DNA2: selection round 1

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: tiny library of DNA1-specific and DNA2-specific antibodies: selection round 0

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: synthetic recombinant antibodies selected by phage display

text: tiny library of DNA1-specific and DNA2-specific antibodies vs DNA1: selection round 1

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: tiny library of DNA1-specific and DNA2-specific antibodies vs DNA2: selection round 1

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: single DNA1-specific antibody (#1)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: single DNA1-specific antibody (#2)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: College de France

text: live

text: Viral

text: single DNA1-specific antibody (#3)

text: Inovirus M13

text: Viral sample from Inovirus M13


text: HBBE, Health Sciences, Northumbria University

text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198655 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198654 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198653 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198657 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198656 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198664 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198663 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198662 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198661 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198660 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198659 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198658 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198666 is currently private and is scheduled to be released on Jul 30, 2023.


text: live

text: Generic

text: Cupriavidus necator

text: GEO accession GSM4198665 is currently private and is scheduled to be released on Jul 30, 2023.


Hymenobacter sp. HMF4947

text: Hankuk University of Foreign Studies

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: South Korea: Yong-in

characteristic: geo loc name

text: tree

characteristic: isolation source

text: Hymenobacter ginkgonis

text: bacterial cell culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Hymenobacter ginkgonis

text: type strain of Hymenobacter ginkgonis

characteristic: type material


characteristic: External Id

text: Hajee Mohammad Danesh Science and Technology University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS.ba

text: 2 inch

characteristic: depth

text: Keywords: GSC:MIxS;MIGS:6.0

text: 37 meters

characteristic: elev

text: Aman rice field soil

text: field

text: Soil

text: Bangladesh

text: 37 degree celsius, TSB medium

text: Aman rice field soil

text: 25.6977 N 88.6548 E

characteristic: lat lon

text: Morganella sp. HSTU-ASny43

text: Genome report

text: MIGS Cultured Bacterial/Archaeal sample from Morganella sp.


text: Korea Research Institute of Bioscience and Biotechnology (KRIBB)

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Korea

text: seawater

text: Novosphingobium aquimarinum

text: bacteria

text: Microbe sample from Novosphingobium aquimarinum

text: type material of Novosphingobium aquimarinum


text: live

text: Microbe, viral or environmental

characteristic: collection date

text: South Korea

characteristic: geo loc name

text: Sea water

text: Novosphingobium aquimarinum

characteristic: organism

text: cell culture

characteristic: title


text: Institute of Medical Genetics and Applied Genomics, University of Tuebingen

text: live

text: Generic

text: anti-mouse IgG (Invitrogen, 31903)

characteristic: antibody

text: SH-SY5Y cells

characteristic: cell type

text: THAP1 knock-down

characteristic: conditions

text: Homo sapiens

text: SH-SY5Y cells

text: THAP1 KD Mouse IgG control


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: anti-rabbit IgG (Cell signaling, 2729)

text: SH-SY5Y cells

text: THAP1 knock-down

text: Homo sapiens

text: SH-SY5Y cells

text: THAP1 KD Rabbit IgG control


text: live

text: Generic

text: anti-rabbit IgG (Cell signaling, 2729)

text: SH-SY5Y cells

text: Wild-type

text: Homo sapiens

text: SH-SY5Y cells

text: Wild-type Rabbit IgG control


text: live

text: Generic

text: anti-H3K27ac (Cell signaling, D5E4)

text: SH-SY5Y cells

text: THAP1 knock-down

text: Homo sapiens

text: SH-SY5Y cells

text: THAP1 KD H3K27ac ChIP-seq


text: live

text: Generic

text: anti-H3K27ac (Cell signaling, D5E4)

text: SH-SY5Y cells

text: Wild-type

text: Homo sapiens

text: SH-SY5Y cells

text: Wild-type H3K27ac ChIP-seq


text: live

text: Generic

text: anti-GATA2 (Santa Cruz Biotechnology, CG2-96)

text: SH-SY5Y cells

text: THAP1 knock-down

text: Homo sapiens

text: SH-SY5Y cells

text: THAP1 KD GATA2 ChIP-seq


text: live

text: Generic

text: anti-CEBPD (Santa Cruz Biotechnology, C-6)

text: SH-SY5Y cells

text: THAP1 knock-down

text: Homo sapiens

text: SH-SY5Y cells

text: THAP1 KD CEBPD ChIP-seq


text: live

text: Generic

text: anti-CTCF(Cell signaling, D31H2)

text: SH-SY5Y cells

text: Wild-type

text: Homo sapiens

text: SH-SY5Y cells

text: CTCF ChIP-seq


text: live

text: Generic

text: anti-flag (Sigma, F1804)

text: SH-SY5Y cells

text: Empty vector expression control

text: Homo sapiens

text: SH-SY5Y cells

text: anti-flag ChIP-seq empty vec


text: live

text: Generic

text: anti-flag (Sigma, F1804)

text: SH-SY5Y cells

text: THAP1-flag overexpression

text: Homo sapiens

text: SH-SY5Y cells

text: anti-flag ChIP-seq THAP1


text: PulseNet Next Generation Subtyping Methods Unit

text: live

text: USA

text: Pathogen.env

text: SC

characteristic: collected by

text: Escherichia

characteristic: genus

text: USA:SC

text: other (non-clinical isolate)

characteristic: host

text: turkey

characteristic: isolation source

text: Escherichia coli

characteristic: strain

text: Escherichia coli

type: AMR curated data - CABBAGE

value: nalidixic acid

value: broth dilution

value: mg/L

value: Sensititre

value: susceptible

value: Escherichia coli

value: cefoxitin

value: gentamicin

value: ciprofloxacin

value: streptomycin

value: ampicillin

value: azithromycin

value: tetracycline

value: resistant

value: sulfisoxazole

value: meropenem

value: ceftriaxone

value: amoxicillin-clavulanic acid

value: CLSI

value: chloramphenicol


text: SCHOOL OF LIFE SCIENCES, Life science, Gwangju Institute of Science and Technology

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Homo sapiens

text: GEO accession GSM4200357 is currently private and is scheduled to be released on Nov 30, 2022.


text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

characteristic: organism

text: GEO accession GSM4200356 is currently private and is scheduled to be released on Nov 30, 2022.

characteristic: title


text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM4200355 is currently private and is scheduled to be released on Nov 30, 2022.


text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM4200354 is currently private and is scheduled to be released on Nov 30, 2022.


text: Zhejiang University

text: live

text: Generic

text: human hepatoma cells

characteristic: cell type

text: Homo sapiens

text: human hepatoma cells

text: No treatment

characteristic: treatment


characteristic: External Id

text: Zhejiang University

characteristic: INSDC center name

text: live

text: Generic

text: Anti-m6A antibody

characteristic: antibody

text: monkey kidney epithelial cells

text: Chlorocebus aethiops

text: monkey kidney epithelial cells

text: PEDV infection for 24hpi


text: Zhejiang University

characteristic: INSDC first public

text: live

text: Generic

text: monkey kidney epithelial cells

text: Chlorocebus aethiops

text: monkey kidney epithelial cells

text: PEDV infection for 24hpi


text: Zhejiang University

text: live

text: Generic

text: Anti-m6A antibody

text: monkey kidney epithelial cells

text: Chlorocebus aethiops

text: monkey kidney epithelial cells

text: No treatment


text: Zhejiang University

text: live

text: Generic

text: monkey kidney epithelial cells

text: Chlorocebus aethiops

text: monkey kidney epithelial cells

text: No treatment


text: Zhejiang University

text: live

text: Generic

text: Anti-m6A antibody

text: human hepatoma cells

text: Homo sapiens

text: human hepatoma cells

text: PEDV infection for 24hpi


text: Zhejiang University

text: live

text: Generic

text: human hepatoma cells

text: Homo sapiens

text: human hepatoma cells

text: PEDV infection for 24hpi


text: Zhejiang University

text: live

text: Generic

text: Anti-m6A antibody

text: human hepatoma cells

text: Homo sapiens

text: human hepatoma cells

text: No treatment


text: University of Washington

text: live

text: Human

characteristic: age

text: Dr. Becker Lab

characteristic: biomaterial provider

text: AML

characteristic: disease

text: First diagnosis

text: AML patient

characteristic: isolate

text: Homo sapiens

text: male

characteristic: sex

text: Bone Marrow

characteristic: tissue

text: Human sample from Homo sapiens


text: University of Washington

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Human

characteristic: NCBI submission model

text: FHCRC Leukemia Repository

text: AML

text: Relapse

text: AML patient

text: Homo sapiens

text: male

text: Bone Marrow

text: Human sample from Homo sapiens


text: University of Washington

text: live

text: Human

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. Becker Lab

text: AML

text: First diagnosis

text: AML patient

text: Homo sapiens

characteristic: organism

text: male

text: Blood

text: Human sample from Homo sapiens

characteristic: title


characteristic: External Id

text: University of Washington

characteristic: INSDC center name

text: live

text: Human

text: Dr. Becker Lab

text: AML

text: Relapse

text: AML patient

text: Homo sapiens

text: male

text: Blood

text: Human sample from Homo sapiens


text: University of Washington

characteristic: INSDC first public

text: live

text: Human

text: FHCRC Leukemia Repository

text: AML

text: First diagnosis

text: AML patient

text: Homo sapiens

text: female

text: Bone Marrow

text: Human sample from Homo sapiens


text: University of Washington

text: live

text: Human

characteristic: age

text: Dr. Becker lab

text: AML

text: Relapse

text: AML patient

text: Homo sapiens

text: female

text: Bone Marrow

text: Human sample from Homo sapiens


text: University of Washington

text: live

text: Human

text: Dr. Becker Lab

characteristic: biomaterial provider

text: AML

text: Relapse

text: AML patient

text: Homo sapiens

text: male

text: Bone Marrow

text: Human sample from Homo sapiens


text: University of Washington

text: live

text: Human

text: Dr. Becker Lab

text: AML

characteristic: disease

text: First diagnosis

text: AML patient

text: Homo sapiens

text: female

text: Bone Marrow

text: Human sample from Homo sapiens


text: University of Washington

text: live

text: Human

text: FHCRC Leukemia Repository

text: AML

text: Relapse

text: AML patient

characteristic: isolate

text: Homo sapiens

text: female

text: Bone Marrow

text: Human sample from Homo sapiens


text: University of Washington

text: live

text: Human

text: Dr. Becker Lab

text: AML

text: First diagnosis

text: AML patient

text: Homo sapiens

text: female

characteristic: sex

text: Blood

text: Human sample from Homo sapiens


text: University of Washington

text: live

text: Human

text: Dr. Becker Lab

text: AML

text: Relapse

text: AML patient

text: Homo sapiens

text: female

text: Blood

characteristic: tissue

text: Human sample from Homo sapiens


text: University of Washington

characteristic: INSDC last update

text: live

text: Human

text: FHCRC Leukemia Repository

text: AML

text: First diagnosis

text: AML patient

text: Homo sapiens

text: male

text: Blood

text: Human sample from Homo sapiens


text: University of Washington

characteristic: INSDC secondary accession

text: live

text: Human

text: Dr. Becker lab

text: AML

text: Relapse

text: AML patient

text: Homo sapiens

text: male

text: Blood

text: Human sample from Homo sapiens


text: University of Washington

text: live

characteristic: INSDC status

text: Human

text: FHCRC Leukemia Repository

text: AML

text: First diagnosis

text: AML patient

text: Homo sapiens

text: female

text: Blood

text: Human sample from Homo sapiens


text: University of Washington

text: live

text: Human

characteristic: NCBI submission model

text: FHCRC Leukemia Repository

text: AML

text: Relapse

text: AML patient

text: Homo sapiens

text: female

text: Blood

text: Human sample from Homo sapiens


text: University of Washington

text: live

text: Human

characteristic: NCBI submission package

text: Dr. Becker lab

text: AML

text: Relapse

text: AML patient

text: Homo sapiens

text: female

text: Blood

text: Human sample from Homo sapiens


text: Peking University Health Science Center

text: live

text: Generic

characteristic: SRA accession

characteristic: cell line

text: Embryonic stem cells

characteristic: cell type

characteristic: chip antibody

text: Mus musculus

text: R1 cells


characteristic: External Id

text: Peking University Health Science Center

characteristic: INSDC center name

text: live

text: Generic

text: Embryonic stem cells

text: Mus musculus

characteristic: organism

text: R1 cells

text: Input DNA

characteristic: title


text: FDA-ARGOS Database

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: DSMZ

characteristic: collected by

characteristic: culture collection

text: DSM 5190

characteristic: description

text: Phenotypic and Molecular Methods

characteristic: identification method

text: Stutzerimonas stutzeri

characteristic: strain

text: Pathogen: clinical or host-associated sample from Stutzerimonas stutzeri

text: type strain of Pseudomonas stutzeri

characteristic: type material


text: FDA-ARGOS Database

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

text: DSMZ

text: DSM 50238

text: Phenotypic and Molecular Methods

text: Stutzerimonas degradans

text: Pathogen: clinical or host-associated sample from Stutzerimonas degradans

text: type strain of Stutzerimonas degradans

characteristic: type-material


text: FDA-ARGOS Database

text: live

text: Pathogen.cl

characteristic: NCBI submission package

characteristic: SRA accession

text: DSMZ

text: DSM 6082

text: Phenotypic and Molecular Methods

text: Stutzerimonas frequens

text: Pathogen: clinical or host-associated sample from Stutzerimonas frequens

text: type strain of Stutzerimonas frequens


characteristic: External Id

text: FDA-ARGOS Database

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: DSMZ

text: DSM 20684

text: Phenotypic and Molecular Methods

text: Lactococcus garvieae

text: Pathogen: clinical or host-associated sample from Lactococcus garvieae

text: type strain of Streptococcus garvieae


text: FDA-ARGOS Database

text: live

text: Pathogen.cl

text: USAMRIID

text: Phenotypic and Molecular Methods

text: Prescottella equi

characteristic: organism

text: Pathogen: clinical or host-associated sample from Prescottella equi

characteristic: title


Deinococcus sp. HMF7620

text: Hankuk University of Foreign Studies

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: South Korea: Yong-in

characteristic: geo loc name

text: tree

characteristic: isolation source

text: Deinococcus arboris

text: bacterial cell culture

characteristic: sample type

text: Microbe sample from Deinococcus arboris

text: type strain of Deinococcus arboris


text: live

text: USA

text: Pathogen.env

text: OR

characteristic: collected by

text: Campylobacter

characteristic: genus

text: USA:OR

text: other (non-clinical isolate)

characteristic: host

text: Chicken Thighs

text: Campylobacter jejuni

characteristic: strain

text: Campylobacter jejuni

value: broth dilution

value: mg/L

value: Sensititre

value: Campylobacter jejuni

value: florfenicol

value: clindamycin

value: nalidixic acid

value: erythromycin

type: AMR

value: EUCAST

value: MIC

value: Trek


text: University of Salford

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: description

text: United Kingdom

text: Sciurus carolinensis

characteristic: individual

text: gut metagenome


characteristic: External Id

text: University of Salford

characteristic: INSDC center name

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: United Kingdom

text: Capreolus capreolus

text: gut metagenome

characteristic: organism


text: chicken

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC first public

text: live

text: USA

text: Pathogen.env

characteristic: PublicAccession

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collection date

text: Campylobacter

text: USA:CA

characteristic: geo loc name

text: other (non-clinical isolate)

text: chicken breast

characteristic: isolation source

text: chicken breast:FOODON_00002703

characteristic: ontological term

text: Campylobacter jejuni

text: food

characteristic: source type

text: jejuni

characteristic: species

text: Pathogen: environmental/food/other sample from Campylobacter jejuni

characteristic: title

value: azithromycin

value: susceptible

value: ciprofloxacin

value: tetracycline

value: resistant

value: gentamicin


text: chicken

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: USA

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collected by

text: Campylobacter

characteristic: genus

text: USA:CA

text: other (non-clinical isolate)

characteristic: host

text: chicken breast

text: chicken breast:FOODON_00002703

text: Campylobacter jejuni

text: food

text: jejuni

characteristic: strain

value: broth dilution

value: telithromycin


characteristic: External Id

text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: USA

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: WIFSS UC Davis

text: Campylobacter

text: USA:CA

text: other (non-clinical isolate)

text: whole chicken

text: chicken whole:FOODON_00002721

text: Campylobacter jejuni

characteristic: organism

text: food

text: jejuni

value: mg/L

value: Sensititre


text: chicken

text: live

text: USA

text: Pathogen.env

characteristic: PublicAccession

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collection date

text: Campylobacter

text: USA:CA

characteristic: geo loc name

text: other (non-clinical isolate)

text: whole chicken

characteristic: isolation source

text: chicken whole:FOODON_00002723

characteristic: ontological term

text: Campylobacter coli

text: food

characteristic: source type

text: coli

characteristic: species

text: Pathogen: environmental/food/other sample from Campylobacter coli

value: Campylobacter coli

value: florfenicol


text: chicken

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: USA

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collected by

text: Campylobacter

characteristic: genus

text: USA:CA

text: other (non-clinical isolate)

text: chicken breast

text: chicken breast:FOODON_00002703

text: Campylobacter jejuni

text: food

text: jejuni

characteristic: title

value: Campylobacter jejuni

value: nalidixic acid

value: clindamycin


characteristic: External Id

text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: USA

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: WIFSS UC Davis

text: Campylobacter

text: USA:CA

text: other (non-clinical isolate)

characteristic: host

text: whole chicken

text: chicken whole:FOODON_00002731

text: Campylobacter coli

text: food

text: coli

characteristic: strain

value: erythromycin

value: EUCAST

value: MIC


text: chicken

text: live

text: USA

text: Pathogen.env

characteristic: PublicAccession

characteristic: SRA accession

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collection date

text: Campylobacter

text: USA:CA

characteristic: geo loc name

text: other (non-clinical isolate)

text: chicken breast

characteristic: isolation source

text: chicken breast:FOODON_00002703

characteristic: ontological term

text: Campylobacter coli

characteristic: organism

text: food

text: coli

value: susceptible

value: azithromycin

value: Trek


text: chicken

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: USA

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collected by

text: Campylobacter

text: USA:CA

text: other (non-clinical isolate)

text: chicken breast

text: chicken breast:FOODON_00002703

text: Campylobacter jejuni

text: food

characteristic: source type

text: jejuni

characteristic: species

value: tetracycline

value: resistant

value: ciprofloxacin


characteristic: External Id

text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: USA

text: Pathogen.env

characteristic: NCBI submission package

text: environmental/food/other

text: WIFSS UC Davis

text: Escherichia

characteristic: genus

text: USA:CA

text: other (non-clinical isolate)

text: whole chicken

text: chicken whole:FOODON_00002739

text: Escherichia coli

text: food

text: coli

text: Pathogen: environmental/food/other sample from Escherichia coli

characteristic: title

value: meropenem

value: broth dilution

value: Escherichia coli

value: sulfisoxazole

value: chloramphenicol

value: gentamicin

value: trimethoprim-sulfamethoxazole

value: CLSI

value: streptomycin

value: ceftriaxone

value: ampicillin


text: chicken

text: live

text: USA

text: Pathogen.env

characteristic: PublicAccession

characteristic: SRA accession

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collection date

text: Campylobacter

text: USA:CA

characteristic: geo loc name

text: other (non-clinical isolate)

characteristic: host

text: whole chicken

characteristic: isolation source

text: chicken whole:FOODON_00002732

text: Campylobacter jejuni

text: food

text: jejuni

characteristic: strain

value: mg/L

value: Sensititre

value: susceptible

value: Campylobacter jejuni

value: nalidixic acid

value: clindamycin

value: erythromycin

value: florfenicol

value: EUCAST

value: MIC


text: chicken

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: USA

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collected by

text: Campylobacter

text: USA:CA

text: other (non-clinical isolate)

text: whole chicken

text: chicken whole:FOODON_00002739

characteristic: ontological term

text: Campylobacter jejuni

characteristic: organism

text: food

text: jejuni

value: broth dilution

value: ciprofloxacin

value: resistant

value: tetracycline

value: azithromycin

value: Trek


characteristic: External Id

text: Yu Chen's Lab, HOPP, Memorial Sloan Kettering Cancer Center

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: cell line

text: Sorted GFP- cells

characteristic: cell type

text: Homo sapiens

text: Human prostate cancer cell PC3


text: live

text: Generic

characteristic: SRA accession

text: Sorted GFP- cells

text: Homo sapiens

text: Human prostate cancer cell DU145

characteristic: title


text: live

text: Generic

text: Sorted GFP+ cells

text: Homo sapiens

text: Human prostate cancer cell DU145


text: live

text: Generic

text: Sorted GFP+ cells

text: Homo sapiens

text: Human prostate cancer cell PC3


text: turkey

characteristic: IFSAC+ Category

text: live

text: USA

text: Pathogen.env

characteristic: PublicAccession

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collection date

text: Escherichia

characteristic: genus

text: USA:CA

characteristic: geo loc name

text: other (non-clinical isolate)

characteristic: host

text: ground turkey

characteristic: isolation source

text: turkey (ground or minced):FOODON_00002714

text: Escherichia coli

text: food

characteristic: source type

text: coli

characteristic: species

value: sulfisoxazole

value: Escherichia coli

value: gentamicin

value: meropenem

value: cefoxitin

value: trimethoprim-sulfamethoxazole

value: CLSI

value: chloramphenicol

value: ampicillin

value: amoxicillin-clavulanic acid


characteristic: External Id

text: chicken

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: USA

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collected by

text: Escherichia

text: USA:CA

text: other (non-clinical isolate)

text: chicken breast

text: chicken breast:FOODON_00002703

characteristic: ontological term

text: Escherichia coli

characteristic: organism

text: food

text: coli

characteristic: strain

value: mg/L

value: Sensititre

value: susceptible

value: ceftriaxone

value: streptomycin


text: turkey

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: USA

text: Pathogen.env

characteristic: NCBI submission package

characteristic: PublicAccession

characteristic: SRA accession

text: environmental/food/other

text: WIFSS UC Davis

text: Escherichia

text: USA:CA

text: other (non-clinical isolate)

text: ground turkey

text: Escherichia coli

text: food

text: coli

characteristic: title

value: azithromycin

value: broth dilution

value: ciprofloxacin

value: resistant

value: tetracycline


text: chicken

text: live

text: USA

text: Pathogen.env

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collection date

text: Campylobacter

characteristic: genus

text: USA:CA

characteristic: geo loc name

text: other (non-clinical isolate)

characteristic: host

text: whole chicken

characteristic: isolation source

text: chicken whole:FOODON_00002738

text: Campylobacter coli

text: food

characteristic: source type

text: coli

characteristic: species

value: clindamycin

value: Campylobacter coli

value: erythromycin

value: florfenicol

value: gentamicin

value: nalidixic acid

value: EUCAST

value: MIC

value: Trek


characteristic: External Id

text: chicken

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: USA

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collected by

text: Escherichia

text: USA:CA

text: other (non-clinical isolate)

text: chicken breast

text: chicken breast:FOODON_00002703

characteristic: ontological term

text: Escherichia coli

text: food

text: coli

value: cefoxitin

value: mg/L

value: Sensititre

value: susceptible

value: Escherichia coli

value: chloramphenicol

value: sulfisoxazole

value: ampicillin

value: amoxicillin-clavulanic acid

value: CLSI

value: meropenem


text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: USA

text: Pathogen.env

characteristic: NCBI submission package

characteristic: PublicAccession

text: environmental/food/other

text: WIFSS UC Davis

text: Campylobacter

text: USA:CA

text: other (non-clinical isolate)

text: chicken breast

text: chicken breast:FOODON_00002703

text: Campylobacter jejuni

characteristic: organism

text: food

text: jejuni

characteristic: strain

value: broth dilution

value: Campylobacter jejuni

value: tetracycline

value: ciprofloxacin

value: florfenicol

value: azithromycin

value: clindamycin

value: erythromycin


text: turkey

text: live

text: USA

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: WIFSS UC Davis

characteristic: collection date

text: Escherichia

characteristic: genus

text: USA:CA

characteristic: geo loc name

text: other (non-clinical isolate)

characteristic: host

text: ground turkey

characteristic: isolation source

text: Escherichia coli

text: food

text: coli

characteristic: title

value: ceftriaxone

value: mg/L

value: Sensititre

value: streptomycin

value: trimethoprim-sulfamethoxazole

value: gentamicin

value: cefoxitin


characteristic: External Id

text: chicken

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: USA

text: Pathogen.env

characteristic: NCBI submission model

text: environmental/food/other

text: WIFSS UC Davis

text: Campylobacter

text: USA:CA

text: other (non-clinical isolate)

text: chicken breast

text: chicken breast:FOODON_00002703

text: Campylobacter coli

text: food

characteristic: source type

text: coli

characteristic: species

value: susceptible

value: Campylobacter coli

value: nalidixic acid

value: EUCAST

value: MIC

value: Trek


Colletotrichum asianum

text: Northwest A&F University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: NCBI submission package

text: H. Prihastuti

characteristic: collected by

text: Thailand: Chiang Mai

text: coffee berry

text: 18.76 N 98.80 E

characteristic: lat lon

text: Colletotrichum asianum

text: ICMP 18580

text: Pathogen: environmental/food/other sample from Colletotrichum asianum

text: culture from holotype of Colletotrichum asianum

characteristic: type material


Adc

text: Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences

text: live

text: Plant

characteristic: SRA accession

text: whole stage

characteristic: dev stage

characteristic: isolate

text: Adiantum capillus-veneris

characteristic: organism

text: leaf

characteristic: tissue

text: plant sample Adiantum capillus-veneris


characteristic: External Id

text: The Sainsbury Laboratory, University of East Anglia

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: Prof. Tofazzal Islam, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Bangladesh

characteristic: biomaterial provider

characteristic: collection date

text: Wheat blast, caused by a fungus Magnaporthe oryzae Triticum pathotype, has been a threat to wheat production in Brazil and some countries in South America since its first emergence in Parana state of Brazil in 1985. In February 2016, it emerged for the first time in Bangladesh and devastated more than 15,000 hectares of wheat in a large area of the South-western and western parts of Bangladesh. At present, it is unclear whether resistant wheat varieties against M. oryzae are available and the degree to which fungicide application for the neck blast management is reliable. Applications of plant probiotic bacteria are known to promote growth of host plants and suppress phytopathogenic fungi by various mechanisms. However, there are no biocontrol agents so far developed against the wheat blast fungus. To find potential biocontrol agents, we screened several hundreds of plant probiotic bacteria isolated from the surface sterilized seeds and organs of various crop plants including wheat and rice in Bangladesh. Some of the isolates including Bacillus subtilis BTS-3 and BTS-4 displayed potent inhibitory activities against the wheat blast fungus in vitro and suppression of disease in vivo. We sequenced these two bacterial isolates and assembled the genomes using the services of MicrobesNG.

characteristic: description

text: Bangladesh

characteristic: geo loc name

text: Rice cultivar Rangabinni

characteristic: isolation source

text: Bacillus subtilis subsp. subtilis

text: cell culture

characteristic: sample type

characteristic: strain

text: subtilis

text: Bacillus subtilis isolated from rice seeds

characteristic: title


text: westlake university

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 6-8 weeks

characteristic: age

text: macrophage

characteristic: cell type

text: wild type

characteristic: genotype

text: Mus musculus

text: macrophage

text: macrophages, siTet2_IFNγ

text: si-Tet2 followed by 12 h IFN-γ stimulation

characteristic: treatment


characteristic: External Id

text: westlake university

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: 6-8 weeks

text: macrophage

text: wild type

text: Mus musculus

characteristic: organism

text: macrophage

text: macrophages, IFNγ

text: si-NC followed by 12 h IFN-γ stimulation


text: westlake university

text: live

text: Generic

text: 6-8 weeks

text: macrophage

text: wild type

text: Mus musculus

text: macrophage

text: macrophages, siTet2_LM

text: si-Tet2 followed by 12 h LM infection


text: westlake university

text: live

text: Generic

text: 6-8 weeks

text: macrophage

text: wild type

text: Mus musculus

text: macrophage

text: macrophages, NC_LM

text: si-NC followed by 12 h LM infection


text: westlake university

text: live

text: Generic

text: 6-8 weeks

text: macrophage

text: wild type

text: Mus musculus

text: macrophage

text: macrophages, control

text: control


text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Bangladesh

characteristic: geo loc name

text: rice cultivar Rangabinni

characteristic: host

characteristic: isolate-name-alias

text: seeds

characteristic: isolation source

text: Bacillus velezensis

text: cell culture

characteristic: sample type

text: Microbe sample from Bacillus velezensis


text: Universidade de Aveiro

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Taiwan: Penghu

text: Cinachyrella sp.

text: plasmid DNA only, amplified using a rolling cycling amplification tecnique

characteristic: isolation-source

text: 23.550706 N 119.640786 E

characteristic: lat lon

text: Vibrio sp. CyArs1

text: plasmidome

characteristic: strain

text: Microbe sample from Vibrio sp. CyArs1

characteristic: title


CyA

characteristic: External Id

text: Universidade de Aveiro

characteristic: INSDC last update

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Taiwan: Penghu

text: Cinachyrella sp.

text: 23.550706 N 119.640786 E

text: sponge metagenome

text: biological replicate 1

characteristic: replicate

text: plasmidome

text: Metagenome or environmental sample from sponge metagenome


CyB

text: Universidade de Aveiro

text: live

text: Metagenome or environmental

characteristic: SRA accession

characteristic: collection date

text: Taiwan: Penghu

characteristic: geo loc name

text: Cinachyrella sp.

characteristic: host

text: 23.550706 N 119.640786 E

text: sponge metagenome

characteristic: organism

text: biological replicate 2

text: plasmidome


CyC

text: Universidade de Aveiro

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: Taiwan: Penghu

text: Cinachyrella sp.

text: 23.550706 N 119.640786 E

text: sponge metagenome

text: biological replicate 3

text: plasmidome

characteristic: sample type


Vibrio sp. CyArs1

text: Universidade de Aveiro

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Taiwan: Penghu

text: Cinachyrella sp.

text: marine broth agar medium with sodium arsenite as selective compound

characteristic: isolation-source

text: 23.550706 N 119.640786 E

text: Vibrio sp. CyArs1

text: pure culture

text: Microbe sample from Vibrio sp. CyArs1


text: Wageningen University

text: live

text: Microbe, viral or environmental

text: Netherlands: Boxmeer

text: Sus scrofa

text: Mesomycoplasma hyopneumoniae

text: bacterial culture

characteristic: strain

text: Microbe sample from Mycoplasma hyopneumoniae strain 98

characteristic: title


characteristic: External Id

text: Zhejiang University

characteristic: INSDC last update

text: live

text: Generic

characteristic: age

text: Mus musculus

text: bone marrow-derived macrophages

characteristic: stain

characteristic: time point

text: bone marrow

characteristic: tissue


text: Zhejiang University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: WT

characteristic: genotype/variation

text: Mus musculus

text: bone marrow-derived macrophages

text: bone marrow


text: Zhejiang University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Mus musculus

characteristic: organism

text: bone marrow-derived macrophages

text: bone marrow


text: turkey

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: USA

text: Pathogen.env

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: NCSU CVM Thakur Lab

characteristic: collected by

characteristic: collection date

text: Escherichia

characteristic: genus

text: USA:NC

characteristic: geo loc name

text: other (non-clinical isolate)

characteristic: host

text: ground turkey (Meleagris gallopavo)

characteristic: isolation source

text: meleagris gallopavo:NCBITAXON_9103, turkey (ground or minced):FOODON_00002714

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type

text: coli

characteristic: species

value: broth dilution

value: Escherichia coli

value: sulfisoxazole

value: CLSI

value: tetracycline

value: resistant

value: amoxicillin-clavulanic acid

value: ciprofloxacin

value: chloramphenicol


characteristic: External Id

text: pork

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: USA

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: NCSU CVM Thakur Lab

text: Escherichia

text: USA:NC

text: other (non-clinical isolate)

text: ground pork (Sus scrofa)

text: pork (ground):FOODON_03309969, sus scrofa:NCBITAXON_9823

text: Escherichia coli

text: animal

text: coli

characteristic: strain

text: Pathogen: environmental/food/other sample from Escherichia coli

characteristic: title

value: meropenem

value: mg/L

value: Sensititre

value: ceftriaxone

value: ampicillin

value: gentamicin

value: streptomycin


text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: USA

text: Pathogen.env

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: NCSU CVM Thakur Lab

characteristic: collected by

text: Campylobacter

text: USA:NC

text: other (non-clinical isolate)

text: chicken thigh (Gallus gallus)

text: chicken thigh:GENEPIO_0002752, gallus gallus:NCBITAXON_9031

text: Campylobacter jejuni

characteristic: organism

text: animal

text: jejuni

text: Pathogen: environmental/food/other sample from Campylobacter jejuni

value: florfenicol

value: susceptible

value: Campylobacter jejuni

value: erythromycin

value: azithromycin

value: clindamycin

value: nalidixic acid

value: EUCAST

value: MIC

value: Trek


text: chicken

text: live

text: USA

text: Pathogen.env

text: environmental/food/other

text: NCSU CVM Thakur Lab

characteristic: collection date

text: Campylobacter

characteristic: genus

text: USA:NC

characteristic: geo loc name

text: other (non-clinical isolate)

characteristic: host

text: chicken leg (Gallus gallus)

characteristic: isolation source

text: chicken leg:GENEPIO_0002751, gallus gallus:NCBITAXON_9031

characteristic: ontological term

text: Campylobacter coli

text: animal

characteristic: source type

text: coli

characteristic: species

text: Pathogen: environmental/food/other sample from Campylobacter coli

value: broth dilution

value: Campylobacter coli

value: ciprofloxacin

value: tetracycline


characteristic: External Id

text: Nankai University

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: J1 mouse embryonic cells

characteristic: cell type

text: Zscan4 OE2

characteristic: genotype

text: Mus musculus

characteristic: passages

text: Embryonic stem cells

text: Zscan4 OE2 ATAC-Seq

characteristic: title


text: Nankai University

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: J1 mouse embryonic cells

text: Zscan4 OE1

text: Mus musculus

characteristic: organism

text: Embryonic stem cells

text: Zscan4 OE1 ATAC-Seq


text: Nankai University

text: live

text: Generic

text: J1 mouse embryonic cells

text: wild type2

text: Mus musculus

text: Embryonic stem cells

text: control2 ATAC-Seq


text: Nankai University

text: live

text: Generic

text: J1 mouse embryonic cells

text: wild type1

text: Mus musculus

text: Embryonic stem cells

text: control1 ATAC-Seq


text: Nankai University

text: live

text: Generic

text: embryo

text: Zscan4 RNAi

text: Mus musculus

text: 2-cell embryo

text: Zscan4 RNAi6 RNA-Seq


text: Nankai University

text: live

text: Generic

text: embryo

text: Zscan4 RNAi

text: Mus musculus

text: 2-cell embryo

text: Zscan4 RNAi5 RNA-Seq


text: Nankai University

text: live

text: Generic

text: embryo

text: Zscan4 RNAi

text: Mus musculus

text: 2-cell embryo

text: Zscan4 RNAi4 RNA-Seq


text: Nankai University

text: live

text: Generic

text: embryo

text: Zscan4 RNAi

text: Mus musculus

text: 2-cell embryo

text: Zscan4 RNAi3 RNA-Seq


text: Nankai University

text: live

text: Generic

text: embryo

text: Zscan4 RNAi

text: Mus musculus

text: 2-cell embryo

text: Zscan4 RNAi2 RNA-Seq


text: Nankai University

text: live

text: Generic

text: embryo

text: Zscan4 RNAi

text: Mus musculus

text: 2-cell embryo

text: Zscan4 RNAi1 RNA-Seq


text: Nankai University

text: live

text: Generic

text: embryo

text: wild type

text: Mus musculus

text: 2-cell embryo

text: Control7 RNA-Seq


text: Nankai University

text: live

text: Generic

text: embryo

text: wild type

text: Mus musculus

text: 2-cell embryo

text: Control6 RNA-Seq


text: Nankai University

text: live

text: Generic

text: embryo

text: wild type

text: Mus musculus

text: 2-cell embryo

text: Control5 RNA-Seq


text: Nankai University

text: live

text: Generic

text: embryo

text: wild type

text: Mus musculus

text: 2-cell embryo

text: Control4 RNA-Seq


text: Nankai University

text: live

text: Generic

text: embryo

text: wild type

text: Mus musculus

text: 2-cell embryo

text: Control3 RNA-Seq


text: Nankai University

text: live

text: Generic

text: J1 mouse embryonic cells

text: Zscan4 OE

text: Mus musculus

text: Embryonic stem cells

text: Zscan4 OE2 RNA-Seq


text: Nankai University

text: live

text: Generic

text: J1 mouse embryonic cells

text: Zscan4 OE

text: Mus musculus

text: Embryonic stem cells

text: Zscan4 OE1 RNA-Seq


text: Nankai University

text: live

text: Generic

text: J1 mouse embryonic cells

text: wild type

text: Mus musculus

text: Embryonic stem cells

text: Control2 RNA-Seq


text: Nankai University

text: live

text: Generic

text: J1 mouse embryonic cells

text: wild type

text: Mus musculus

text: Embryonic stem cells

text: Control1 RNA-Seq


tag: Namespace:DOE Joint Genome Institute

text: Environmental | Aquatic | Thermal springs | Hot (42-90C) | Microbial mats

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: collection date

text: USA: California

characteristic: geo loc name

text: Cyanobacteria

characteristic: host

text: Laboratory sample

characteristic: isolation source

text: 37.9313884 N 122.0239394 W

characteristic: lat lon

text: algae metagenome

text: Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-27


characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: USA: California

text: Cyanobacteria

text: Laboratory sample

text: 37.9313884 N 122.0239394 W

text: algae metagenome

text: Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-21


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: USA: California

text: Cyanobacteria

text: Laboratory sample

text: 37.9313884 N 122.0239394 W

text: algae metagenome

text: Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-22


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: USA: California

text: Cyanobacteria

text: Laboratory sample

text: 37.9313884 N 122.0239394 W

text: algae metagenome

text: Cyanobacterial communities from the Joint Genome Institute, California, USA from Joint Genome Institute, California, USA - FECB-24 metaG

characteristic: title


text: Environmental | Aquatic | Freshwater | Lake | Unclassified

text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: Sequencing Lake Kivu metagenomes for testing microbial methane upgrading to C2 and C3 hydrocarbons

characteristic: description

text: Democratic Republic of the Congo: South-Kivu

text: Lake Kivu water Kabuno Bay

text: 1.64 S 29.05 E

text: lake water metagenome

text: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_092012_10.3m


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Lake Kivu water Kabuno Bay

text: 1.64 S 29.05 E

text: lake water metagenome

text: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_092012_10m


characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Lake Kivu water Kabuno Bay

text: 1.64 S 29.05 E

text: lake water metagenome

characteristic: organism

text: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_022012_12m


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: geo loc name

text: Lake Kivu water Kabuno Bay

text: 1.64 S 29.05 E

text: lake water metagenome

text: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_022012_11.5m


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Lake Kivu water Kabuno Bay

characteristic: isolation source

text: 1.64 S 29.05 E

text: lake water metagenome

text: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_022012_10m


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Lake Kivu water Kabuno Bay

text: 1.64 S 29.05 E

characteristic: lat lon

text: lake water metagenome

text: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_092012_9.5m


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Lake Kivu water Kabuno Bay

text: 1.64 S 29.05 E

text: lake water metagenome

text: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_092012_11.1m


text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: Lake Kivu water Kabuno Bay

text: 1.64 S 29.05 E

text: lake water metagenome

text: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_022012_11m


text: DOE Joint Genome Institute

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: Lake Kivu water Kabuno Bay

text: 1.64 S 29.05 E

text: lake water metagenome

text: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_022012_11.25m


text: MCCB, UMass Medical School

text: live

text: Generic

characteristic: NCBI submission model

text: MEF cells from E13.5 mouse gestation embryo

characteristic: cell types

text: Mus musculus

characteristic: passage

text: Mouse embryonic fibroblasts

text: WT MEF DMSO 4 days

text: DMSO

characteristic: treatment


text: MCCB, UMass Medical School

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Mus musculus

text: Mouse embryonic fibroblasts

text: WT MEF DMSO 2 days

characteristic: title

text: DMSO


text: MCCB, UMass Medical School

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: Mouse embryonic fibroblasts

text: WT MEF CP1 4 days repeat 2

text: MGH-CP1 1uM in DMSO


text: MCCB, UMass Medical School

text: live

text: Generic

text: Mus musculus

characteristic: organism

text: Mouse embryonic fibroblasts

text: WT MEF CP1 4 days repeat 1

text: MGH-CP1 1uM in DMSO


text: MCCB, UMass Medical School

text: live

text: Generic

text: Mus musculus

text: Mouse embryonic fibroblasts

text: WT MEF CP1 2 days repeat 2

text: MGH-CP1 1uM in DMSO


text: MCCB, UMass Medical School

text: live

text: Generic

text: Mus musculus

text: Mouse embryonic fibroblasts

text: WT MEF CP1 2 days repeat 1

text: MGH-CP1 1uM in DMSO


text: MCCB, UMass Medical School

text: live

text: Generic

text: Mus musculus

text: Mouse embryonic fibroblasts

text: LATS1/2 DKO MEF DMSO 4 days

text: DMSO


text: MCCB, UMass Medical School

text: live

text: Generic

text: Mus musculus

text: Mouse embryonic fibroblasts

text: LATS1/2 DKO MEF DMSO 2 days

text: DMSO


text: MCCB, UMass Medical School

text: live

text: Generic

text: Mus musculus

text: Mouse embryonic fibroblasts

text: LATS1/2 DKO MEF CP1 4 days repeat2

text: MGH-CP1 1uM in DMSO


text: MCCB, UMass Medical School

text: live

text: Generic

text: Mus musculus

text: Mouse embryonic fibroblasts

text: LATS1/2 DKO MEF CP1 4 days repeat1

text: MGH-CP1 1uM in DMSO


text: MCCB, UMass Medical School

text: live

text: Generic

text: Mus musculus

text: Mouse embryonic fibroblasts

text: LATS1/2 DKO MEF CP1 2 days repeat2

text: MGH-CP1 1uM in DMSO


text: MCCB, UMass Medical School

text: live

text: Generic

text: Mus musculus

text: Mouse embryonic fibroblasts

text: LATS1/2 DKO MEF CP1 2 days repeat1

text: MGH-CP1 1uM in DMSO


text: chicken

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: USA

text: Pathogen.env

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: NCSU CVM Thakur Lab

characteristic: collected by

characteristic: collection date

text: Campylobacter

characteristic: genus

text: USA:NC

characteristic: geo loc name

text: other (non-clinical isolate)

characteristic: host

text: chicken breast (Gallus gallus)

text: chicken breast:FOODON_00002703, gallus gallus:NCBITAXON_9031

characteristic: ontological term

text: Campylobacter jejuni

text: animal

characteristic: source type

text: jejuni

characteristic: species

characteristic: strain

text: Pathogen: environmental/food/other sample from Campylobacter jejuni

value: mg/L

value: Sensititre

value: resistant


characteristic: External Id

text: Environmental | Aquatic | Freshwater | Lake | Sediment

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: description

text: Indonesia: Lake Matano, South Sulawesi

text: sediment

characteristic: isolation source

text: 2.75 S 121.5 E

characteristic: lat lon

text: sediment metagenome

text: Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.F19


text: Environmental | Aquatic | Non-marine Saline and Alkaline | Saline | Epilimnion

text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Greece: Etoliko Lagoon

characteristic: geo loc name

text: Etoliko Lagoon, Greece

text: 38.4825 N 21.315 E

text: salt lake metagenome

characteristic: organism

text: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

characteristic: title


text: Environmental | Terrestrial | Soil | Wetlands | Peat

text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: collection date

text: Peat soil microbial communities from Stordalen Mire, Sweden.

text: Sweden: Norrbotten County, Stordalen Mire

text: Peat soil

text: 68.3529 N 19.0475 E

text: peat metagenome

text: Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T50


characteristic: External Id

text: Environmental | Aquatic | Non-marine Saline and Alkaline | Saline | Sediment

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Greece: Etoliko Lagoon

text: Etoliko Lagoon, Greece

text: 38.4825 N 21.315 E

text: salt lake metagenome

text: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment


text: Engineered | Wastewater | Sewage | Unclassified | Unclassified

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Sewage-derived enrichment culture (anaerobic medium, 0.1% glucose), biofilm phase

text: USA: California

text: Sewage enrichment

text: 37.82 N 122.29 W

text: wastewater metagenome

text: Sewage microbial communities from Oakland, California, United States - Biofuel Metagenome 11


text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: Sewage-derived enrichment culture (anaerobic medium, 0.1% glucose), planktonic phase

text: USA: California

text: Sewage enrichment

text: 37.82 N 122.29 W

text: wastewater metagenome

text: Sewage microbial communities from Oakland, California, United States - Biofuel Metagenome 10


text: pork

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: NCSU CVM Thakur Lab

characteristic: collected by

text: Escherichia

characteristic: genus

text: USA:NC

text: ground pork (Sus scrofa)

text: pork (ground):FOODON_03309969, sus scrofa:NCBITAXON_9823

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type

text: coli

characteristic: species

characteristic: strain

text: Pathogen: environmental/food/other sample from Escherichia coli


text: chicken

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: USA

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: NCSU CVM Thakur Lab

text: Campylobacter

text: USA:NC

characteristic: geo loc name

text: other (non-clinical isolate)

characteristic: host

text: chicken wing (Gallus gallus)

characteristic: isolation source

text: chicken wing:FOODON_00002674, gallus gallus:NCBITAXON_9031

text: Campylobacter coli

characteristic: organism

text: animal

text: coli

text: Pathogen: environmental/food/other sample from Campylobacter coli

value: florfenicol

value: gentamicin


characteristic: External Id

text: vegetable row crops (leafy)

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: environmental/food/other

text: North Carolina State University | College of Veterinary Medicine | Thakur Molecular Epidemiology Laboratory

characteristic: collection date

text: Salmonella

text: USA:NC

text: lettuce

text: lettuce vegetable food product:FOODON_00001998

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: food

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica

characteristic: title


text: turkey

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: NCSU CVM Thakur Lab

characteristic: collected by

text: Escherichia

characteristic: genus

text: USA:NC

text: ground turkey (Meleagris gallopavo)

text: meleagris gallopavo:NCBITAXON_9103, turkey (ground or minced):FOODON_00002714

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type

text: coli

characteristic: species

characteristic: strain


characteristic: External Id

text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC center name

text: live

text: USA

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: NCSU CVM Thakur Lab

text: Escherichia

text: USA:NC

characteristic: geo loc name

text: other (non-clinical isolate)

characteristic: host

text: chicken breast (Gallus gallus)

characteristic: isolation source

text: chicken breast:FOODON_00002703, gallus gallus:NCBITAXON_9031

text: Escherichia coli

characteristic: organism

text: animal

text: coli

value: cefoxitin

value: susceptible

value: Escherichia coli

value: chloramphenicol

value: trimethoprim-sulfamethoxazole

value: CLSI

value: ampicillin

value: amoxicillin-clavulanic acid

value: ceftriaxone

value: streptomycin

value: meropenem


text: beef

characteristic: IFSAC Category

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: PublicAccession

text: NCSU CVM Thakur Lab

characteristic: collection date

text: Escherichia

text: USA:NC

text: ground beef (Bos taurus)

text: ground beef food product:FOODON_00001282, bos taurus:NCBITAXON_9913

text: Escherichia coli

text: food

text: coli

characteristic: title


characteristic: External Id

text: pork

characteristic: IFSAC+ Category

text: live

text: USA

text: Pathogen.env

characteristic: ProjectAccession

text: environmental/food/other

text: NCSU CVM Thakur Lab

characteristic: collected by

text: Escherichia

characteristic: genus

text: USA:NC

text: other (non-clinical isolate)

text: ground pork (Sus scrofa)

characteristic: ontological term

text: Escherichia coli

text: animal

characteristic: source type

text: coli

characteristic: species

characteristic: strain

value: broth dilution

value: ciprofloxacin

value: azithromycin

value: sulfisoxazole


text: environmental-pasture| cow

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: Salmonella

text: USA:NC

characteristic: geo loc name

text: fecal pasture close to dairy cow

characteristic: isolation source

text: dairy cow:FOODON_03411201| feces:UBERON_0001988| pasture:ENVO_00000266

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: environmental

text: enterica


characteristic: External Id

text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: USA

text: Pathogen.env

characteristic: PublicAccession

text: environmental/food/other

text: NCSU CVM Thakur Lab

characteristic: collection date

text: Escherichia

text: USA:NC

text: other (non-clinical isolate)

characteristic: host

text: chicken wing (Gallus gallus)

text: Escherichia coli

text: animal

text: coli

characteristic: title

value: mg/L

value: Sensititre

value: resistant

value: tetracycline

value: intermediate

value: nalidixic acid


text: environmental

characteristic: INSDC center name

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: ProjectAccession

text: environmental/food/other

text: Thakur Lab_NC State_CVM

characteristic: collected by

text: Salmonella

characteristic: genus

text: USA:NC

text: soil

characteristic: ontological term

text: Salmonella enterica

text: environmental

characteristic: source type

text: enterica

characteristic: species

characteristic: strain


characteristic: External Id

text: environmental

characteristic: IFSAC+ Category

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: SRA accession

text: environmental/food/other

text: Salmonella

text: USA:NC

characteristic: geo loc name

text: soil

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

characteristic: project name

characteristic: sequenced by

text: environmental

text: enterica


text: Universidad Autonoma Metropolitana

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

text: Neobuxbaumia polylopha cultivated 1

characteristic: description

text: Mexico:Queretaro

text: Cephalocereus polylophus

characteristic: host

text: Rhizosphere of cactus plant

text: 20.59 N 100.38 W

characteristic: lat lon

text: rhizosphere metagenome

text: Illumina sequencing

text: N. polylopha cultivated 1

characteristic: title


characteristic: External Id

text: Universidad Autonoma Metropolitana

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: Neobuxbaumia polylopha cultivated 2

text: Mexico:Queretaro

text: Cephalocereus polylophus

text: Rhizosphere of cactus plant

text: 20.59 N 100.38 W

text: rhizosphere metagenome

text: Illumina sequencing

text: N. polylopha cultivated 2


text: Universidad Autonoma Metropolitana

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: Neobuxbaumia polylopha cultivated 3

text: Mexico:Queretaro

characteristic: geo loc name

text: Cephalocereus polylophus

text: Rhizosphere of cactus plant

characteristic: isolation source

text: 20.59 N 100.38 W

text: rhizosphere metagenome

text: Illumina sequencing

text: N. polylopha cultivated 3


text: Universidad Autonoma Metropolitana

text: live

text: Metagenome or environmental

text: Neobuxbaumia polylopha wild 1

text: Mexico:Queretaro

text: Cephalocereus polylophus

text: Rhizosphere of cactus plant

text: 20.59 N 100.38 W

text: rhizosphere metagenome

characteristic: organism

text: Illumina sequencing

text: N. polylopha wild 1


text: Universidad Autonoma Metropolitana

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: Neobuxbaumiapolylopha wild 2

text: Mexico:Queretaro

text: Cephalocereus polylophus

text: Rhizosphere of cactus plant

text: 20.59 N 100.38 W

text: rhizosphere metagenome

text: Illumina sequencing

text: N. polylopha wild 2


text: Universidad Autonoma Metropolitana

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Neobuxbaumia polylopha wild 3

text: Mexico:Queretaro

text: Cephalocereus polylophus

text: Rhizosphere of cactus plant

text: 20.59 N 100.38 W

text: rhizosphere metagenome

text: Illumina sequencing

text: N. polylopha wild 3


Pyst0 licxa

text: Northeast Agricultural University

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: plant

text: 1soil sample

characteristic: isolate

text: China:harbin

text: soil metagenome

text: not collected

characteristic: sample type

text: 1not applicable

characteristic: strain


Pyst0 licxb

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

text: plant

text: 2soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 2not applicable


Pyst0 licxc

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

characteristic: host

text: 3soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 3not applicable

characteristic: title


Pyst5 licxd

characteristic: External Id

text: Northeast Agricultural University

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: plant

text: 4soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 4not applicable


Pyst5 licxe

text: Northeast Agricultural University

characteristic: INSDC last update

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: plant

text: 5soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 5not applicable


Pyst5 licxf

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 6soil sample

text: China:harbin

characteristic: isolation source

text: soil metagenome

text: not collected

text: 6not applicable


Pyst10 licxg

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 7soil sample

text: China:harbin

text: soil metagenome

characteristic: organism

text: not collected

text: 7not applicable


Pyst10 licxh

text: Northeast Agricultural University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: plant

text: 8soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 8not applicable


Pyst10 licxi

text: Northeast Agricultural University

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: plant

text: 9soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 9not applicable


Pyst20 licxj

text: Northeast Agricultural University

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: plant

text: 10soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 10not applicable


Pyst20 licxk

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 11soil sample

characteristic: isolate

text: China:harbin

text: soil metagenome

text: not collected

text: 11not applicable


Pyst20 licxl

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 12soil sample

text: China:harbin

text: soil metagenome

text: not collected

characteristic: sample type

text: 12not applicable


Pyst40 licxm

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 13soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 13not applicable

characteristic: strain


Pyst40 licxn

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: plant

text: 14soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 14not applicable


Pyst40 licxo

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: plant

text: 15soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 15not applicable


Pyst80 licxp

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

characteristic: collection date

text: plant

text: 16soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 16not applicable


Pyst80 licxq

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

characteristic: host

text: 17soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 17not applicable


Pyst80 licxr

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 18soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 18not applicable

characteristic: title


Pyst0 licxar

characteristic: External Id

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 1soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 1not applicable


Pyst0 licxbq

text: Northeast Agricultural University

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: plant

text: 2soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 2not applicable


Pyst0 licxcp

text: Northeast Agricultural University

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: plant

text: 3soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 3not applicable


Pyst5 licxdo

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: plant

text: 4soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 4not applicable


Pyst5 licxen

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 5soil sample

text: China:harbin

characteristic: isolation source

text: soil metagenome

text: not collected

text: 5not applicable


Pyst5 licxfm

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 6soil sample

text: China:harbin

text: soil metagenome

characteristic: organism

text: not collected

text: 6not applicable


Pyst10 licxgl

text: Northeast Agricultural University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: plant

text: 7soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 7not applicable


Pyst10 licxhk

text: Northeast Agricultural University

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: plant

text: 8soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 8not applicable


Pyst10 licxij

text: Northeast Agricultural University

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: plant

text: 9soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 9not applicable


Pyst20 licxji

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 10soil sample

characteristic: isolate

text: China:harbin

text: soil metagenome

text: not collected

text: 10not applicable


Pyst20 licxkh

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 11soil sample

text: China:harbin

text: soil metagenome

text: not collected

characteristic: sample type

text: 11not applicable


Pyst20 licxlg

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 12soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 12not applicable

characteristic: strain


Pyst40 licxmf

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: plant

text: 13soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 13not applicable


Pyst40 licxne

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: plant

text: 14soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 14not applicable


Pyst40 licxod

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

characteristic: collection date

text: plant

text: 15soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 15not applicable


Pyst80 licxpc

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

characteristic: host

text: 16soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 16not applicable


Pyst80 licxqb

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 17soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 17not applicable

characteristic: title


Pyst80 licxra

characteristic: External Id

text: Northeast Agricultural University

text: live

text: Metagenome or environmental

text: plant

text: 18soil sample

text: China:harbin

text: soil metagenome

text: not collected

text: 18not applicable


Pseudomonas stutzeri XL272

text: Nanjing Agricultural University

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Xinli Sun

characteristic: collected by

text: China:Nanjing

characteristic: geo loc name

text: cucumber rhizosphere

text: Stutzerimonas degradans

text: cell culture

characteristic: temp

text: Microbe sample from Pseudomonas stutzeri XL272


name: Ramlibacter sp. MAH-25 isolated from soil

text: Chung-Ang University

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: Draft genome sequence of Ramlibacter sp. MAH-25

characteristic: description

text: South Korea: Anseong-si

text: soil

characteristic: isolation source

text: Ramlibacter pinisoli

characteristic: organism

text: Bacteria

text: Microbe sample from Ramlibacter sp. MAH-25

text: type material of Ramlibacter pinisoli

characteristic: type material


text: Departement of Biomedicine, University of Basel

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: NMuMG

characteristic: cell line

text: Mus musculus

characteristic: replicate

characteristic: sirna

text: normal mammary gland cells

text: Subclone 9

characteristic: subclone

text: TGFbeta

characteristic: treatment

characteristic: treatment time


characteristic: External Id

characteristic: INSDC first public

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: NMuMG

text: Mus musculus

text: siCtr

text: normal mammary gland cells

text: Subclone 9

characteristic: title

text: TGFbeta


characteristic: INSDC last update

text: live

text: Generic

text: NMuMG

text: Mus musculus

characteristic: organism

text: normal mammary gland cells

text: Subclone 9


characteristic: INSDC center name

text: live

text: Generic

text: NMuMG

text: Mus musculus

text: siCtr

text: normal mammary gland cells

text: Subclone 9


characteristic: INSDC secondary accession

text: live

text: Generic

text: NMuMG

text: Irf1 antibody (M20, St Cruz sc-640)

characteristic: chip antibody

text: Mus musculus

text: Irf1 ChIP

characteristic: sample type

text: normal mammary gland cells

text: Subclone 9

text: TGFbeta


text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: NMuMG

characteristic: cell line

text: Irf1 antibody (M20, St Cruz sc-640)

text: Mus musculus

text: Irf1 ChIP

text: normal mammary gland cells

text: Subclone 9


text: live

text: Generic

text: NMuMG

text: Mus musculus

characteristic: replicate

text: Input

text: normal mammary gland cells

text: Subclone 9

characteristic: subclone


text: Robert Koch Institute

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: Germany

characteristic: geo loc name

text: Catagonus wagneri

characteristic: host

text: lung

text: lung

characteristic: isolation source

text: Streptococcus catagoni

text: tissue sample

characteristic: strain

text: Microbe sample from Streptococcus catagoni

text: type strain of Streptococcus catagoni

characteristic: type material


characteristic: External Id

text: Robert Koch Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Netherlands

text: pig

text: nose swab

characteristic: isolation-source

text: Erysipelothrix anatis

text: nose swab

text: Microbe sample from Erysipelothrix anatis

characteristic: title


text: The Sainsbury Laboratory, University of East Anglia

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: SRA accession

text: Prof. Tofazzal Islam, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Bangladesh

characteristic: biomaterial provider

text: Wheat blast, caused by a fungus Magnaporthe oryzae Triticum pathotype, has been a threat to wheat production in Brazil and some countries in South America since its first emergence in Parana state of Brazil in 1985. In February 2016, it emerged for the first time in Bangladesh and devastated more than 15,000 hectares of wheat in a large area of the South-western and western parts of Bangladesh. At present, it is unclear whether resistant wheat varieties against M. oryzae are available and the degree to which fungicide application for the neck blast management is reliable. Applications of plant probiotic bacteria are known to promote growth of host plants and suppress phytopathogenic fungi by various mechanisms. However, there are no biocontrol agents so far developed against the wheat blast fungus. To find potential biocontrol agents, we screened several hundreds of plant probiotic bacteria isolated from the surface sterilized seeds and organs of various crop plants including wheat and rice in Bangladesh. Some of the isolates including Bacillus amyloliquefaciens strain BTLK6A displayed potent inhibitory activities against the wheat blast fungus in vitro and suppression of disease in vivo. We sequenced this bacterial isolate and assembled the genome using the services provided by MicrobesNG.

characteristic: description

text: Bangladesh

text: Triticum aestivum cv. Kanchan

text: seeds

text: Bacillus velezensis

characteristic: organism

text: cell culture

characteristic: sample type

text: Bacillus amyloliquefaciens isolated from seeds of wheat cultivar Kanchan


text: KAUST

text: live

text: MIMS.me

text: 1.297 microM

characteristic: ammonium

text: 708.5 mM

characteristic: chloride

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:6.0

text: marine brine pool

text: brine pool

text: water

text: Saudi Arabia: Red Sea, Suakin Deep

text: marine brine pool

text: 19.61 N 38.73 E

text: marine metagenome

characteristic: ph

text: 41.01 PSU

characteristic: salinity

text: Niskin Bottle

text: 1 L

text: 0.2 micrometer

text: 608.7 mM

characteristic: sodium

text: MIMS Environmental/Metagenome sample from marine metagenome


characteristic: External Id

text: KAUST

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 0.395 microM

text: 720.7 mM

text: Keywords: GSC:MIxS;MIMS:6.0

text: marine brine pool

text: brine pool

text: water

text: Saudi Arabia: Red Sea, Suakin Deep

text: marine brine pool

text: 19.61 N 38.73 E

text: marine metagenome

text: 41.71 PSU

text: Niskin Bottle

text: 1 L

text: 0.2 micrometer

text: 619.2 mM


text: KAUST

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

text: 5.534 microM

text: 828.4 mM

text: Keywords: GSC:MIxS;MIMS:6.0

text: marine brine pool

text: brine pool

text: water

text: Saudi Arabia: Red Sea, Suakin Deep

text: marine brine pool

text: 19.61 N 38.73 E

text: marine metagenome

text: 47.94 PSU

text: Niskin Bottle

text: 1 L

text: 0.2 micrometer

text: 711.7 mM

characteristic: title


text: KAUST

text: live

text: MIMS.me

characteristic: SRA accession

text: 11.135 microM

text: 1225.4 mM

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: marine brine pool

text: brine pool

text: water

text: Saudi Arabia: Red Sea, Suakin Deep

text: marine brine pool

text: 19.61 N 38.73 E

text: marine metagenome

characteristic: organism

text: 70.92 PSU

text: Niskin Bottle

text: 1 L

text: 0.2 micrometer

text: 1052.8 mM


text: KAUST

text: live

text: MIMS.me

text: 5.19 microM

characteristic: ammonium

text: 1673.2 mM

characteristic: chloride

text: Keywords: GSC:MIxS;MIMS:6.0

text: marine brine pool

text: brine pool

text: water

text: Saudi Arabia: Red Sea, Suakin Deep

text: marine brine pool

text: 19.61 N 38.73 E

text: marine metagenome

text: 96.84 PSU

text: Niskin Bottle

text: 1 L

text: 0.2 micrometer

text: 1437.5 mM


text: KAUST

text: live

text: MIMS.me

text: 6.044 microM

text: 1913 mM

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:6.0

text: marine brine pool

text: brine pool

text: water

text: Saudi Arabia: Red Sea, Suakin Deep

text: marine brine pool

text: 19.61 N 38.73 E

text: marine metagenome

characteristic: ph

text: 110.71 PSU

text: Niskin Bottle

text: 1 L

text: 0.2 micrometer

text: 1643.5 mM


text: KAUST

text: live

text: MIMS.me

text: 2.074 microM

text: 2031.4 mM

text: Keywords: GSC:MIxS;MIMS:6.0

text: marine brine pool

text: brine pool

text: water

text: Saudi Arabia: Red Sea, Suakin Deep

text: marine brine pool

text: 19.61 N 38.73 E

text: marine metagenome

text: 117.57 PSU

characteristic: salinity

text: Niskin Bottle

text: 1 L

text: 0.2 micrometer

text: 1745.3 mM

characteristic: sodium


characteristic: External Id

text: KAUST

characteristic: INSDC first public

text: live

text: MIMS.me

text: 9.171 microM

text: 2155.9 mM

text: Keywords: GSC:MIxS;MIMS:6.0

text: marine brine pool

text: brine pool

text: water

text: Saudi Arabia: Red Sea, Suakin Deep

text: marine brine pool

text: 19.61 N 38.73 E

text: marine metagenome

text: 124.77 PSU

text: Niskin Bottle

text: 1 L

text: 0.2 micrometer

text: 1852.2 mM


text: KAUST

characteristic: INSDC last update

text: live

text: MIMS.me

characteristic: NCBI submission model

text: 1.772 microM

text: 2234.4 mM

text: Keywords: GSC:MIxS;MIMS:6.0

text: marine brine pool

text: brine pool

text: water

text: Saudi Arabia: Red Sea, Suakin Deep

text: marine brine pool

text: 19.61 N 38.73 E

text: marine metagenome

text: 129.32 PSU

text: Niskin Bottle

text: 1 L

text: 0.2 micrometer

text: 1919.7 mM


text: KAUST

characteristic: INSDC center name

text: live

text: MIMS.me

characteristic: NCBI submission package

text: 0.843 microM

text: 2407.2 mM

text: Keywords: GSC:MIxS;MIMS:6.0

text: marine brine pool

text: brine pool

text: water

text: Saudi Arabia: Red Sea, Suakin Deep

text: marine brine pool

text: 19.61 N 38.73 E

text: marine metagenome

text: 139.31 PSU

text: Niskin Bottle

text: 1 L

text: 0.2 micrometer

text: 2068.1 mM


Mar-SuakBodyB

text: KAUST

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

text: 0.318 microM

text: 2413.1 mM

text: Keywords: GSC:MIxS;MIMS:6.0

text: marine brine pool

text: brine pool

text: water

text: Saudi Arabia: Red Sea, Suakin Deep

text: marine brine pool

text: 19.61 N 38.73 E

text: marine metagenome

text: 146.24 PSU

text: Niskin Bottle

text: 10 L

text: 0.2 micrometer

text: 2073.2 mM


text: USDA-ARS

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: SRA accession

characteristic: collection date

characteristic: culture-collection

text: Keywords: GSC:MIxS;MIGS:6.0

text: Forest

text: Beech forest

text: bark

text: Germany

characteristic: geo loc name

text: Fagus sylvatica

characteristic: host

text: Neonectria coccinea

text: CBS 119158

characteristic: strain

text: MIGS Eukaryotic sample from Neonectria coccinea

characteristic: title


text: Center for Food Safety and Applied Nutrition, Food and Drug Administration

text: live

text: Invertebrate

text: Thailand:Pi Chai Fish Port

text: Lupocycloporus gracilimanus

characteristic: organism

characteristic: specimen voucher

text: Muscle

characteristic: tissue

text: Invertebrate sample from Lupocycloporus gracilimanus


characteristic: External Id

text: AZTI

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: water-teleo

characteristic: isolation source

text: 43.5923 N 5.9765 W

characteristic: lat lon

text: marine metagenome


text: AZTI

characteristic: INSDC center name

characteristic: INSDC last update

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: water-teleo

text: 44.3782 N 4.2508 W

text: marine metagenome


text: AZTI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: SRA accession

characteristic: collection date

text: water-teleo

text: 43.8745 N 4.2477 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.4248 N 4.2363 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.4015 N 3.2055 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.5748 N 3.2078 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.8245 N 3.2122 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.6247 N 2.174 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.4265 N 1.827 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.6242 N 1.9315 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.625 N 1.724 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.6245 N 1.4953 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.8739 N 2.2783 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.8757 N 1.862 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 43.875 N 1.4497 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 44.1252 N 2.8352 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 44.126 N 2.0692 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 44.1257 N 1.3748 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 44.6255 N 3.1877 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 44.6258 N 2.0007 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 4.46255 N 1.3133 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.1245 N 2.5653 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.1252 N 3.2033 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.1262 N 2.1402 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.1248 N 1.3627 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.3737 N 1.219 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.3753 N 2.1437 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.3762 N 3.2072 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.6257 N 3.495 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.624 N 2.284 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.6255 N 1.4305 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.8759 N 1.4283 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.8737 N 2.3578 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 45.8757 N 3.7847 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 46.1267 N 4.2352 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 46.126 N 2.7185 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 46.124 N 1.6407 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 46.8749 N 2.5082 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 46.8755 N 3.307 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 46.8747 N 5.1985 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 47.876 N 4.4132 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 47.8752 N 5.2573 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 47.8755 N 7.7017 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo

text: 44.6247 N 1.7185 W

text: marine metagenome


text: AZTI

text: live

text: Metagenome or environmental

text: water-teleo-nb

text: 43.5923 N 5.9765 W

text: marine metagenome