text: Environmental | Terrestrial | Soil | Wetlands | Peat

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: Peat soil microbial communities from Stordalen Mire, Sweden

text: Sweden: Norrbotten County, Stordalen Mire

text: Peat soil

text: 68.3569 N 19.0502 E

text: peat metagenome

text: Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-1-M


status: PUBLIC

tag: Namespace:DOE Joint Genome Institute

characteristic: External Id

text: Environmental | Aquatic | Marine | Intertidal zone | Tidal flats

tag: attribute

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

text: Tidal flats microbial mat communities from the lagoon near Shannah, Oman; from a mat lacking salt crust cover

characteristic: description

text: Oman: Shannah

characteristic: geo loc name

text: Tidal flats microbial mat

characteristic: isolation source

text: 20.7452 N 58.6625 E

characteristic: lat lon

text: tidal flat metagenome

characteristic: organism

text: Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVII_3

characteristic: title


text: Environmental | Aquatic | Non-marine Saline and Alkaline | Saline | Unclassified

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: USA: Corpus Christi, Texas

text: saltwater from algal raceway

text: 27.6091 N 97.3125 W

text: pond metagenome

text: Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW1_20151203


characteristic: External Id

text: Engineered | Lab culture | Culture media | Fungi | Unclassified

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Metatranscriptome of Anaeromyces robustus S4 x Methanobacterium bryantii co-culture on reed canary grass substrate

text: USA: California

text: pure culture on reed canary grass substrate

text: 34.414 N 119.8489 W

text: fungus metagenome

text: Metatranscriptome of Anaeromyces robustus S4 x Methanobacterium bryantii co-culture from UC Santa Barbara, California, United States - C12D4


text: Environmental | Terrestrial | Rock-dwelling (subaerial biofilms) | Unclassified | Unclassified

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Damp rock surface microbial communities from Makauwahi Cave, Hawaii, United States

text: USA: Makauwahi cave, Hawaii

text: Cyanosarcina radialis HA8281-LM2 and co-occurring heterotrophs from damp rock above a pool in the cave

text: 21.8883 N 159.4188 W

text: algae metagenome

text: Cyanosarcina radialis HA8281-LM2 and co-occurring heterotrophs from damp rock surface from Makauwahi cave, Hawaii, United States - 20190225_14


text: Environmental | Aquatic | Marine | Coastal | Sediment

text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: Sweden: Baltic Sea

text: untreated Baltic Sea Sediments

text: 57.423 N 16.6683 E

text: sediment metagenome

text: Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18JunD


text: Environmental | Terrestrial | Soil | Greenhouse | Unclassified

text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: Soil microbial communities from Duke University greenhouse, North Carolina, United States; in absence of ectomycorrhizal fungi Suillus cothurnatus, no nitrogen added

text: USA: North Carolina

text: soil from greenhouse

text: 36 N 78 W

text: soil metagenome

text: Soil microbial communities from Duke University greenhouse, North Carolina, United States - NS_C_2 noSuillus Control


text: DOE Joint Genome Institute

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: Metatranscriptome of soil microbial communities from Duke University greenhouse, North Carolina, United States; in presence of ectomycorrhizal fungi Suillus cothurnatus, no nitrogen added

text: USA: North Carolina

text: soil from greenhouse

text: 36 N 78 W

text: soil metagenome

text: Metatranscriptome of soil microbial communities from Duke University greenhouse, North Carolina, United States - H1 wSuillus Control


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: USA: California

text: 34.414 N 119.8489 W

text: fungus metagenome

text: Metatranscriptome of Anaeromyces robustus S4 x Methanobacterium bryantii co-culture from UC Santa Barbara, California, United States - C14D5


text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: USA: California

text: 34.414 N 119.8489 W

text: fungus metagenome

text: Metatranscriptome of Anaeromyces robustus S4 x Methanobacterium bryantii co-culture from UC Santa Barbara, California, United States - C17D6


text: Environmental | Terrestrial | Soil | Grasslands | Unclassified

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: USA: Illinois

text: Prairie soil

text: 41.893 N 89.305 W

text: soil metagenome

text: Soil microbial communities from Nachusa Grasslands, Illinois, United States - AG_101317


text: Environmental | Terrestrial | Soil | Wetlands | Permafrost

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: Sweden: Abisko, Stordalen Mire

text: Peat from Stordalen Mire, Abisko, Sweden

text: 68.3532 N 19.0477 E

text: peat metagenome

text: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_C2


text: Environmental | Aquatic | Non-marine Saline and Alkaline | Saline | Unclassified

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: collection date

text: USA: Corpus Christi, Texas

text: saltwater from algal raceway

text: 27.6091 N 97.3125 W

text: pond metagenome

text: Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW9_20151203


text: Environmental | Aquatic | Marine | Intertidal zone | Tidal flats

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Tidal flats microbial mat communities from the lagoon near Shannah, Oman; from a mat covered with 2 cm thick salt crust

characteristic: description

text: Oman: Shannah

text: Tidal flats microbial mat

text: 20.7609 N 58.6478 E

text: tidal flat metagenome

text: Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MV_0


text: Environmental | Aquatic | Freshwater | Lake | Sediment

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Indonesia: Lake Matano, South Sulawesi

characteristic: geo loc name

text: sediment

text: 2.4667 S 121.2833 E

text: sediment metagenome

text: Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.E13.redo


text: Environmental | Aquatic | Marine | Oceanic | Sediment

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: USA: California

text: untreated marine sediment

characteristic: isolation source

text: 36.799 N 121.0256 W

text: marine sediment metagenome

text: Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3000m_C1_0cm


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Indonesia: Lake Matano, South Sulawesi

text: sediment

text: 2.4667 S 121.2833 E

characteristic: lat lon

text: sediment metagenome

text: Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.M15.redo


text: Environmental | Terrestrial | Soil | Agricultural land | Unclassified

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States; soil from rotation with only Sugarcane

text: USA: Florida

text: Everglades agriculture soil

text: 26.6541 N 80.6298 W

text: soil metagenome

characteristic: organism

text: Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot5_rep3


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: USA: Florida

text: Everglades agriculture soil

text: 26.6541 N 80.6298 W

text: soil metagenome

text: Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot5_rep2

characteristic: title


text: Environmental | Aquatic | Floodplain | Sediment | Unclassified

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: USA: Riverton, Wyoming

text: uranium-contaminated floodplain

text: 42.9886 N 108.4 W

text: sediment metagenome

text: Sediment microbial communities fromuranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_091317_115_130


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: USA: Riverton, Wyoming

text: uranium-contaminated floodplain

text: 42.9886 N 108.4 W

text: sediment metagenome

text: Sediment microbial communities fromuranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_072517_103_113_jgi


text: Environmental | Aquatic | Marine | Intertidal zone | Salt marsh

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Tidal flats microbial mat communities from the lagoon near Shannah, Oman; from a mat lacking salt crust cover

text: Oman: Shannah

text: Tidal flats microbial mat

text: 20.7452 N 58.6625 E

text: tidal flat metagenome

text: Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MIX_4


text: Environmental | Aquatic | Non-marine Saline and Alkaline | Saline | Unclassified

text: DOE Joint Genome Institute

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: Antarctica

text: saline lake water

text: 68.4514 S 78.2565 E

text: salt lake metagenome

text: Saline water microbial communities from a lake in Antarctica - Fletcher Lake #419


text: Environmental | Aquatic | Marine | Intertidal zone | Tidal flats

text: DOE Joint Genome Institute

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: Oman: Shannah

text: Tidal flats microbial mat

text: 20.7452 N 58.6625 E

text: tidal flat metagenome

text: Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVIII_0


text: Environmental | Terrestrial | Soil | Wetlands | Permafrost

text: DOE Joint Genome Institute

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: Sweden: Abisko, Stordalen Mire

text: Peat from Stordalen Mire, Abisko, Sweden

text: 68.3532 N 19.0477 E

text: peat metagenome

text: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_C2


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Antarctica

text: saline lake water

text: 68.4599 S 78.2353 E

text: salt lake metagenome

text: Saline water microbial communities from a lake in Antarctica - Highway Lake #984


text: Host-associated | Algae | Microalgae | Unclassified | Unclassified

text: DOE Joint Genome Institute

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: France:Palavas-les-Flots, France

text: Outdoor raceway pond with amended sea water

text: 43.5198 N 3.9073 E

text: algae metagenome

text: Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France - DNA-ultraVirome


text: Environmental | Terrestrial | Soil | Wetlands | Peat

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Peat soil microbial communities from Stordalen Mire, Sweden

text: Sweden: Norrbotten County, Stordalen Mire

text: Peat soil

text: 68.3532 N 19.0466 E

text: peat metagenome

text: Peatland microbial communities from Stordalen Mire, Sweden - 714 P3 30-34


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: USA: Corpus Christi, Texas

text: saltwater from algal raceway

text: 27.6091 N 97.3125 W

text: pond metagenome

text: Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - Pt-7


text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: collection date

text: USA: Corpus Christi, Texas

text: saltwater from algal raceway

text: 27.6091 N 97.3125 W

text: pond metagenome

text: Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW7_20151102


text: Environmental | Aquatic | Freshwater | Ice | Glacier

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: description

text: China: Ngari, Tibet

text: glacier ice

text: 35.2833 N 81.4833 E

text: ice metagenome

text: Glacier ice viral communities from Ngari, Tibet, China - 20_GP2_173.9


text: Environmental | Aquatic | Floodplain | Sediment | Unclassified

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: USA: Riverton, Wyoming

characteristic: geo loc name

text: uranium-contaminated floodplain

text: 42.9886 N 108.4 W

text: sediment metagenome

text: Sediment microbial communities fromuranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_091317_80_90


text: Host-associated | Mammals | Digestive system | Stomach | Rumen

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Australia: Woodstock, Queensland

text: Bos taurus

characteristic: host

text: rumen from cattle fed with Rhodes grass

characteristic: isolation source

text: 19.6574 S 146.8351 E

text: bovine gut metagenome

text: Metataranscriptome of bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_016


text: Environmental | Aquatic | Non-marine Saline and Alkaline | Saline | Unclassified

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

text: Antarctica

text: saline lake water

text: 68.4782 S 78.1627 E

characteristic: lat lon

text: salt lake metagenome

characteristic: organism

text: Saline water microbial communities from a lake in Antarctica - Williams Lake #987


text: Environmental | Terrestrial | Soil | Grasslands | Unclassified

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: USA: Illinois

text: Prairie soil

text: 41.896 N 89.3636 W

text: soil metagenome

text: Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_101317

characteristic: title


characteristic: External Id

text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Genomics of the early diverging lineages of fungi and their transition to terrestrial, plant-based ecologies

text: Japan: Hokkaido

text: 43.078 N 141.34 E

text: Mycoemilia scoparia

text: NBRC 100468

characteristic: strain

text: Mycoemilia scoparia NBRC 100468 Resequencing

text: culture from holotype of Mycoemilia scoparia

characteristic: type material


text: Peking University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: China: Shenzhen

text: marine surface sediment

text: 22.52 N 113.99 E

text: marine sediment metagenome

text: Metagenome or environmental sample from marine sediment metagenome


text: The Independent Schools Foundation Academy

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: biomaterial provider

text: Evelyn Moore

characteristic: collected by

text: China: Hong Kong island

text: Beach water

text: 22.243027 N 114.182764 E

text: Escherichia coli

text: water sample

characteristic: sample type

text: Microbe sample from Escherichia coli


text: CSIR-Institute of Genomics and Integrative Biology

text: live

text: Pathogen.cl

characteristic: NCBI submission package

text: Severe acute respiratory syndrome coronavirus 2

text: Biological Replicate 753

characteristic: replicate

text: Negative Control 1


text: live

text: Pathogen.cl

characteristic: organism

text: Biological Replicate 754

text: Negative Control 2


text: live

text: Pathogen.cl

characteristic: SRA accession

text: Biological Replicate 755

text: Negative Control 3


text: live

text: Pathogen.cl

text: Biological Replicate 756

text: Negative Control 4

characteristic: title


characteristic: External Id

text: live

text: Pathogen.cl

text: Biological Replicate 757

text: Negative Control 5


text: live

text: Pathogen.cl

text: Biological Replicate 758

characteristic: strain

text: Negative Control 6


text: live

text: Pathogen.cl

text: Biological Replicate 759

text: Negative Control 7


text: live

text: Pathogen.cl

text: Biological Replicate 760

text: Negative Control 8


text: live

text: Pathogen.cl

text: Biological Replicate 761

text: Positive Control 1


text: live

text: Pathogen.cl

text: Biological Replicate 762

text: Positive Control 2


text: live

text: Pathogen.cl

text: Biological Replicate 763

text: Positive Control 3


text: live

text: Pathogen.cl

text: Biological Replicate 764

text: Positive Control 4


text: live

text: Pathogen.cl

text: Biological Replicate 765

text: Positive Control 5


text: live

text: Pathogen.cl

text: Biological Replicate 766

text: Positive Control 6


text: live

text: Pathogen.cl

text: Biological Replicate 767

text: Positive Control 7


text: live

text: Pathogen.cl

text: Biological Replicate 768

text: Positive Control 8


text: IIT Mandi

text: live

text: Metagenome or environmental

characteristic: collection date

text: Low-MAC group

characteristic: description

text: Japan:Tokyo

characteristic: geo loc name

characteristic: host

text: feces

characteristic: isolation source

text: 35.6762 N 139.6503 E

characteristic: lat lon

text: mouse gut metagenome

text: Metagenomic sample (AIN_a)


text: IIT Mandi

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

text: Low-MAC group

text: Japan:Tokyo

text: feces

text: 35.6762 N 139.6503 E

text: mouse gut metagenome

text: Metagenomic sample (AIN_b)


text: IIT Mandi

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: Low-MAC group

text: Japan:Tokyo

text: feces

text: 35.6762 N 139.6503 E

text: mouse gut metagenome

characteristic: organism

text: Metagenomic sample (AIN_c)


text: IIT Mandi

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: Low-MAC group

text: Japan:Tokyo

text: feces

text: 35.6762 N 139.6503 E

text: mouse gut metagenome

text: Metagenomic sample (AIN_d)

characteristic: title


characteristic: External Id

text: IIT Mandi

text: live

text: Metagenome or environmental

text: Low-MAC group

text: Japan:Tokyo

text: feces

text: 35.6762 N 139.6503 E

text: mouse gut metagenome

text: Metagenomic sample (AIN_e)


text: IIT Mandi

text: live

text: Metagenome or environmental

characteristic: collection date

text: High-MAC group

text: Japan:Tokyo

text: feces

text: 35.6762 N 139.6503 E

text: mouse gut metagenome

text: Metagenomic sample (CA-1_a)


text: IIT Mandi

text: live

text: Metagenome or environmental

text: High-MAC group

characteristic: description

text: Japan:Tokyo

text: feces

text: 35.6762 N 139.6503 E

text: mouse gut metagenome

text: Metagenomic sample (CA-1_b)


text: IIT Mandi

text: live

text: Metagenome or environmental

text: High-MAC group

text: Japan:Tokyo

characteristic: geo loc name

text: feces

text: 35.6762 N 139.6503 E

text: mouse gut metagenome

text: Metagenomic sample (CA-1_c)


text: IIT Mandi

text: live

text: Metagenome or environmental

text: High-MAC group

text: Japan:Tokyo

characteristic: host

text: feces

text: 35.6762 N 139.6503 E

text: mouse gut metagenome

text: Metagenomic sample (CA-1_d)


text: IIT Mandi

text: live

text: Metagenome or environmental

text: Japan:Tokyo

text: feces

characteristic: isolation source

text: 35.6762 N 139.6503 E

text: mouse gut metagenome

text: Metagenomic sample (CA-1_e)


text: Jawaharlal Nehru University

text: live

text: Plant

characteristic: cultivar

text: Mature

text: India: New Delhi

text: Morus indica

text: Leaf

characteristic: tissue

text: WGS of Morus indica


text: Jawaharlal Nehru University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Plant

text: Mature

text: India: New Delhi

text: Morus indica

text: Leaf

text: Hi-C sequencing of mulberry


name: 48h RNA_seq Streptomyces ambofaciens ATCC23877 pirA::pTYM-rpoB

text: National Research Council (CNR)

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

text: pirA::pTYM-rpoB

characteristic: genotype

text: France

text: soil

text: Streptomyces ambofaciens ATCC 23877

text: cell culture

characteristic: sample type

text: ATCC 23877

characteristic: strain

characteristic: time

text: type strain of Streptomyces ambofaciens

characteristic: type material


name: 72h RNA_seq Streptomyces ambofaciens ATCC23877 pirA::pTYM-rpoB

characteristic: External Id

text: National Research Council (CNR)

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: pirA::pTYM-rpoB

text: France

text: soil

text: Streptomyces ambofaciens ATCC 23877

characteristic: organism

text: cell culture

text: ATCC 23877

characteristic: title

text: type strain of Streptomyces ambofaciens


name: 96h RNA_seq Streptomyces ambofaciens ATCC23877 pirA::pTYM-rpoB

text: National Research Council (CNR)

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: pirA::pTYM-rpoB

text: France

characteristic: geo loc name

text: soil

characteristic: isolation source

text: Streptomyces ambofaciens ATCC 23877

text: cell culture

text: ATCC 23877

text: type strain of Streptomyces ambofaciens


name: 120h RNA_seq Streptomyces ambofaciens ATCC23877 pirA::pTYM-rpoB

text: National Research Council (CNR)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: pirA::pTYM-rpoB

text: France

text: soil

text: Streptomyces ambofaciens ATCC 23877

text: cell culture

text: ATCC 23877

text: type strain of Streptomyces ambofaciens


text: Baylor College of Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mus musculus

text: Heart

text: Heart

characteristic: tissue

text: TAC 6 week+Vehicle

characteristic: treatment


text: Baylor College of Medicine

text: live

text: Generic

text: Mus musculus

text: Heart

characteristic: strain

text: Heart

text: TAC 1 week+SR9009


characteristic: External Id

text: Baylor College of Medicine

text: live

text: Generic

text: Mus musculus

text: Heart

text: Heart

text: TAC 1 week+Vehicle


text: Baylor College of Medicine

text: live

characteristic: INSDC status

text: Generic

text: Mus musculus

text: Heart

text: Heart

text: Control


text: Baylor College of Medicine

text: live

text: Generic

characteristic: NCBI submission model

text: Mus musculus

text: Heart

text: Heart

text: TAC 6 week+SR9009


text: Matthew Alexander, Pediatrics, University of Alabama at Birmingham

text: live

text: Generic

characteristic: NCBI submission package

text: 6 months

characteristic: age

characteristic: genotype

text: Mus musculus

text: Tibialis anterior

text: FVB N/J

text: Tibialis anterior

text: miR-486 KO 4


text: live

text: Generic

characteristic: SRA accession

text: 6 months

text: Mus musculus

characteristic: organism

text: Tibialis anterior

text: FVB N/J

text: Tibialis anterior

text: miR-486 KO 3

characteristic: title


text: live

text: Generic

text: 6 months

text: Mus musculus

text: Tibialis anterior

text: FVB N/J

text: Tibialis anterior

text: miR-486 KO 2


text: live

text: Generic

text: 6 months

text: Mus musculus

text: Tibialis anterior

text: FVB N/J

text: Tibialis anterior

text: miR-486 KO 1


text: live

text: Generic

text: 6 months

text: wildtype

text: Mus musculus

text: Tibialis anterior

text: Tibialis anterior

text: WT 3


text: live

text: Generic

text: 6 months

text: wildtype

text: Mus musculus

text: Tibialis anterior

text: Tibialis anterior

text: WT 2


text: live

text: Generic

text: 6 months

text: wildtype

text: Mus musculus

text: Tibialis anterior

text: Tibialis anterior

text: WT 1


text: Jawaharlal Nehru University

text: live

text: Plant

text: Mature

text: Not known

characteristic: ecotype

text: India

text: Oryza coarctata

text: Leaf

text: Plant sample from Oryza coarctata


text: Nanjing medical university

characteristic: INSDC center name

text: live

text: Generic

text: postnatal day 70

text: Beta cell specific miR-503 transgenic

text: Mus musculus

text: Islet

text: islet

text: βTG miR-503


text: Nanjing medical university

characteristic: INSDC first public

text: live

text: Generic

text: postnatal day 70

text: wild type

text: Mus musculus

text: Islet

text: islet

text: WT


text: USAMRD-K

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: USAMRD-A

characteristic: collected by

characteristic: collection date

text: Kenya

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: Chikungunya fever

characteristic: host disease

text: Mombasa

characteristic: isolation source

text: 4.0435 S 39.6582 E

characteristic: lat lon

text: Chikungunya virus

text: IOL

text: Pathogen: clinical or host-associated sample from Chikungunya virus


Lens maenamensis UF_507382 (ICH-00416)

characteristic: External Id

text: National Museum of Natural History

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Cambodia: Tonle Srepok River, major bridge crossing on road from Stung Treng to Ban Lung

text: John Pfeiffer

characteristic: identified by

characteristic: isolate

text: Southeast Asia

text: 13.443388 N 106.603294 E

text: Lens maenamensis

characteristic: specimen voucher

text: mantle

characteristic: tissue

text: Invertebrate sample from Lens maenamensis


Ensidens spiculus UF_507798 (ICH-00824)

text: National Museum of Natural History

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Invertebrate

characteristic: SRA accession

text: Thailand: Mao River below dam at Rt. 212 bridge approx. 29 km ESE of Bueng Kan

text: John Pfeiffer

text: Southeast Asia

text: 18.282598 N 103.880723 E

text: Ensidens spiculus

characteristic: organism

text: mantle

text: Invertebrate sample from Ensidens spiculus

characteristic: title


Ensidens telus UF_507553 (ICH-02256)

text: National Museum of Natural History

text: live

text: Invertebrate

characteristic: collection date

text: Thailand: Chaman River at Rt. 3010 in Makham

characteristic: geo loc name

text: John Pfeiffer

text: Southeast Asia

characteristic: isolation source

text: 12.724763 N 102.184107 E

text: Ensidens telus

text: mantle

text: Invertebrate sample from Ensidens telus


name: Hyriopsis kratiensis UF_507402 (ICH-00502)

characteristic: External Id

text: National Museum of Natural History

characteristic: INSDC secondary accession

text: live

text: Invertebrate

text: Cambodia: Mekong River, 5.17 miles upstream of Mekong and Sekong Confluence

text: John Pfeiffer

text: Southeast Asia

text: 13.595154 N 106.014469 E

characteristic: lat lon

text: Hyriopsis kratiensis

text: mantle

text: Invertebrate sample from Hyriopsis kratiensis


name: Hyriopsis sakhonensis UF_507786 (ICH-00803)

text: National Museum of Natural History

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Thailand: Songkhram River near confluence with Un River at bridge N of Ban Si Songkhram

text: John Pfeiffer

text: Southeast Asia

text: 17.634146 N 104.24573 E

text: Hyriopsis sakhonensis

text: mantle

text: Invertebrate sample from Hyriopsis sakhonensis

text: paratype of Hyriopsis sakhonensis

characteristic: type material


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

characteristic: cell type

text: Mus musculus

text: Chemically-induced mouse embryonic fibroblasts

text: day 4 of the reprogramming process

characteristic: time

text: Ctr

characteristic: treatment


text: University of Copenhagen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: Mus musculus

text: day 4 of the reprogramming process

text: CFAE


text: University of Copenhagen

text: live

text: Generic

characteristic: SRA accession

text: mouse embryonic fibroblasts (MEFs)

text: Mus musculus

characteristic: organism

text: day 4 of the reprogramming process

characteristic: title


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: Mus musculus

text: day 4 of the reprogramming process

text: Basal


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: Mus musculus

text: day 4 of the reprogramming process

text: AE


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: input

characteristic: chip antibody

text: Mus musculus

text: day 4 of the reprogramming process


characteristic: External Id

text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: anti-H3K4me3 (Abcam)

text: Mus musculus

text: day 4 of the reprogramming process


text: University of Copenhagen

characteristic: INSDC secondary accession

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: anti-H3K27me3 (Millipore)

text: Mus musculus

text: day 4 of the reprogramming process


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: input

text: Mus musculus

text: day 4 of the reprogramming process

text: CFAE


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: anti-H3K4me3 (Abcam)

text: Mus musculus

text: day 4 of the reprogramming process

text: CFAE


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: anti-H3K27me3 (Millipore)

text: Mus musculus

text: day 4 of the reprogramming process

text: CFAE


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: input

text: Mus musculus

text: day 4 of the reprogramming process

text: Basal


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: anti-H3K4me3 (Abcam)

text: Mus musculus

text: day 4 of the reprogramming process

text: Basal


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: anti-H3K27me3 (Millipore)

text: Mus musculus

text: day 4 of the reprogramming process

text: Basal


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: input

text: Mus musculus

text: day 4 of the reprogramming process

text: AE


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: anti-H3K4me3 (Abcam)

text: Mus musculus

text: day 4 of the reprogramming process

text: AE


text: University of Copenhagen

text: live

text: Generic

text: mouse embryonic fibroblasts (MEFs)

text: anti-H3K27me3 (Millipore)

text: Mus musculus

text: day 4 of the reprogramming process

text: AE


text: UCSD

text: live

text: Generic

text: Input

characteristic: antibody

text: Homo sapiens

text: patient-derived cells

text: glioblastoma stem cells

characteristic: tissue


text: UCSD

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: patient-derived cells

text: glioblastoma stem cells

text: Alvocidib


text: UCSD

text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: patient-derived cells

text: glioblastoma stem cells

text: DMSO


text: UCSD

text: live

text: Generic

characteristic: cell type

text: Homo sapiens

text: patient-derived cells

text: glioblastoma stem cells


text: UCSD

text: live

text: Generic

text: Homo sapiens

text: patient-derived cells

text: glioblastoma stem cells

text: shCONT


text: UCSD

text: live

text: Generic

text: YY1 antibody (Active Motif, cat # 61779)

text: Homo sapiens

text: patient-derived cells

text: glioblastoma stem cells


text: University of Rochester

text: live

text: Generic

text: erythroid

text: Homo sapiens


text: University of Rochester

text: live

text: Generic

text: erythroid

text: Homo sapiens

text: CD34 cells


text: Chinese Academy of Fishery Science

text: live

text: Model organism or animal

characteristic: age

characteristic: breed

characteristic: cultivar

text: adult

text: YangChengLake

characteristic: ecotype

characteristic: isolate

text: Eriocheir sinensis

text: male

characteristic: sex

text: YangChengLake

characteristic: strain

text: liver

text: Model organism or animal sample from Eriocheirsinensis


text: Hainan University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

characteristic: collection date

text: China:Xinjiang Province

characteristic: geo loc name

text: rhizosphere of cotton

characteristic: isolation source

text: Bacillus velezensis

characteristic: organism

text: whole organism

characteristic: sample type

text: Microbe sample from Bacillus velezensis

characteristic: title


characteristic: External Id

text: Nanjing Agricultural University

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: China

text: duck

characteristic: host

text: Escherichia coli

text: tissue sample

text: Microbe sample from Escherichia coli


text: The University of Melbourne

characteristic: INSDC secondary accession

text: live

text: Invertebrate

text: Australia:Parkvile, Victoria

characteristic: isolate

text: Lab strain

text: Lucilia cuprina

text: mixed larvae tissue

characteristic: tissue

text: Mixed Larvae_LCML1


text: The University of Melbourne

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Invertebrate

text: Australia:Parkvile, Victoria

text: Lab strain

text: Lucilia cuprina

text: male tissue


text: University of Castilla-La Mancha

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: Non-infected

characteristic: agent

text: Aprox. 9-days-old plants (3 days post infection)

characteristic: developmental stage

characteristic: ecotype

text: Arabidopsis thaliana

text: Roots

text: RC3 Roots


text: University of Castilla-La Mancha

text: live

text: Generic

text: Non-infected

text: Arabidopsis thaliana

characteristic: organism

text: Roots

text: RC2 Roots


text: University of Castilla-La Mancha

text: live

text: Generic

text: Non-infected

text: Arabidopsis thaliana

text: Roots

text: RC1 Roots

characteristic: title


characteristic: External Id

text: University of Castilla-La Mancha

text: live

text: Generic

text: Infected with Meloidogyne javanica

text: Arabidopsis thaliana

text: Roots

text: G3 Roots


text: University of Castilla-La Mancha

text: live

characteristic: INSDC status

text: Generic

text: Infected with Meloidogyne javanica

text: Arabidopsis thaliana

text: Roots

text: G2 Roots


text: University of Castilla-La Mancha

text: live

text: Generic

characteristic: NCBI submission model

text: Infected with Meloidogyne javanica

text: Arabidopsis thaliana

text: Roots

text: G1 Roots


text: Institute for Regenerative Medicine, University of Zurich

text: live

text: Generic

characteristic: NCBI submission package

characteristic: cell line

text: Homo sapiens

text: DAP5-2_Ribo: DAP5-null replicate 2 for Ribo-seq


characteristic: INSDC secondary accession

text: live

text: Generic

text: Homo sapiens

text: DAP5-1_Ribo: DAP5-null replicate 1 for Ribo-seq


text: live

text: Generic

text: Homo sapiens

text: control-2_Ribo: Wild-type replicate 2 for Ribo-seq


text: live

text: Generic

text: Homo sapiens

text: control-1_Ribo: Wild-type replicate 1 for Ribo-seq


text: live

text: Generic

text: Homo sapiens

text: DAP5-2_RNA: DAP5-null replicate 2 for RNA-seq


text: live

text: Generic

text: Homo sapiens

text: DAP5-1_RNA: DAP5-null replicate 1 for RNA-seq


text: live

text: Generic

text: Homo sapiens

text: control-2_RNA: Wild-type replicate 2 for RNA-seq


text: live

text: Generic

text: Homo sapiens

text: control-1_RNA: Wild-type replicate 1 for RNA-seq


Enrichment culture from tap water, NSFW

text: Fudan University

text: live

text: Microbe, viral or environmental

text: This BioSample is a metagenomic assembly obtained from the drinking water metagenome metagenome BioSample: SAMN15659668

characteristic: derived-from

text: filter and ammonium

characteristic: description

characteristic: environmental-sample

text: China: Shanghai

text: NSFW

characteristic: isolate

text: enrichment culture NSFW from tap water in Fudan University, filter and ammonium

text: drinking water metagenome

characteristic: metagenome-source

characteristic: metagenomic

text: Nitrospira sp.

text: metagenomic assembly

characteristic: sample-type

text: Microbe sample from Nitrospira sp.


Enrichment culture from tap water, DH1

text: Fudan University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: This BioSample is a metagenomic assembly obtained from the drinking water metagenome metagenome BioSample: SAMN15659630

text: calcium carbonate and urea

text: China: Shanghai

text: enrichment culture DH1 from tap water in Fudan University, calcium carbonate and urea

text: drinking water metagenome

text: Nitrospira sp.

text: metagenomic assembly

text: Microbe sample from Nitrospira sp.


text: Hunan university

text: live

text: Generic

characteristic: SRA accession

text: L4 animal

characteristic: development stage

characteristic: genotype

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: L4 animal exposured for 24 h

characteristic: time

text: WT PA 3

characteristic: title

text: P. aeruginosa for 24 hrs

characteristic: treatment


characteristic: External Id

text: Hunan university

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: L4 animal

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: L4 animal exposured for 24 h

text: WT PA 2

text: P. aeruginosa for 24 hrs


text: Hunan university

text: live

text: Generic

text: L4 animal

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: L4 animal exposured for 24 h

text: WT PA 1

text: P. aeruginosa for 24 hrs


text: Hunan university

text: live

text: Generic

text: L4 animal

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: L4 animal exposured for 24 h

text: WT OP 3

text: control


text: Hunan university

text: live

text: Generic

text: L4 animal

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: L4 animal exposured for 24 h

text: WT OP 2

text: control


text: Hunan university

text: live

text: Generic

text: L4 animal

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: L4 animal exposured for 24 h

text: WT OP 1

text: control


text: live

text: Pathogen.cl

text: Institute of Medical Microbiology, Virology and Hygiene, University Medical Center Hamburg-Eppendorf

characteristic: collected by

characteristic: collection date

text: Germany: Hamburg

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: Prosthesis Related Infections

characteristic: host disease

text: nose; prosthetic joint infection

characteristic: isolation source

text: 53.33 N 10.1 E

characteristic: lat lon

text: Staphylococcus epidermidis

characteristic: strain

text: Pathogen: clinical or host-associated sample from Staphylococcus epidermidis


text: University Medical Center Hamburg-Eppendorf

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: Germany: Hamburg

text: Homo sapiens

text: Prosthesis Related Infections

text: nose; prosthetic joint infection

text: 53.33 N 10.1 E

text: Staphylococcus epidermidis

characteristic: organism


characteristic: External Id

text: Martin Eilers, Chair for Biochemistry and Molecular Biology, University of Wuerzburg

text: live

text: Generic

characteristic: SRA accession

text: J2 (Scicons)

characteristic: antibody for ip

text: pancreatic carcinoma

characteristic: cell type

text: sequencing of double-stranded RNA

characteristic: library strategy

text: CRISPR/Cas9 knockout of Myc

characteristic: myc manipulation

text: Mus musculus

text: Dox-inducible expression of Myc-WT

characteristic: other manipulations

text: KPC cells

text: 10% U2OS cells (human)

characteristic: spike-in

text: Sample49: E275_J2_IP_dox_PE_dsRNA-seq

characteristic: title

text: Dox and RNase T1

characteristic: treatment


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: J2 (Scicons)

text: pancreatic carcinoma

text: sequencing of double-stranded RNA

text: CRISPR/Cas9 knockout of Myc

text: Mus musculus

text: Dox-inducible expression of Myc-WT

text: KPC cells

text: 10% U2OS cells (human)

text: Sample48: E275_J2_IP_RIII_etoh_dsRNA-seq

text: EtOH, RNase T1 and RNase III


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: J2 (Scicons)

text: pancreatic carcinoma

text: sequencing of double-stranded RNA

text: CRISPR/Cas9 knockout of Myc

text: Mus musculus

text: Dox-inducible expression of Myc-WT

text: KPC cells

text: 10% U2OS cells (human)

text: Sample47: E275_J2_IP_RIII_dox_dsRNA-seq

text: Dox, RNase T1 and RNase III


characteristic: INSDC last update

text: live

text: Generic

text: J2 (Scicons)

text: pancreatic carcinoma

text: sequencing of double-stranded RNA

text: CRISPR/Cas9 knockout of Myc

text: Mus musculus

characteristic: organism

text: Dox-inducible expression of Myc-WT

text: KPC cells

text: 10% U2OS cells (human)

text: Sample46: E275_J2_IP_etoh_dsRNA-seq

text: EtOH and RNase T1


characteristic: External Id

text: live

text: Generic

characteristic: SRA accession

text: J2 (Scicons)

text: pancreatic carcinoma

text: sequencing of double-stranded RNA

text: CRISPR/Cas9 knockout of Myc

text: Mus musculus

text: Dox-inducible expression of Myc-WT

text: KPC cells

text: 10% U2OS cells (human)

text: Sample45: E275_J2_IP_dox_dsRNA-seq

text: Dox and RNase T1


text: live

text: Generic

text: pancreatic carcinoma

characteristic: cell type

text: sequencing of double-stranded RNA

text: CRISPR/Cas9 knockout of Myc

text: Mus musculus

text: Dox-inducible expression of Myc-WT

text: KPC cells

text: 10% U2OS cells (human)

text: Sample44: E275_IgG_etoh_dsRNA-seq

text: EtOH


text: live

text: Generic

text: pancreatic carcinoma

text: sequencing of double-stranded RNA

characteristic: library strategy

text: CRISPR/Cas9 knockout of Myc

text: Mus musculus

text: Dox-inducible expression of Myc-WT

text: KPC cells

text: 10% U2OS cells (human)

text: Sample43: E275_IgG_dox_dsRNA-seq

text: Dox


text: live

text: Generic

text: pancreatic carcinoma

text: sequencing of double-stranded RNA

text: CRISPR/Cas9 knockout of Myc

characteristic: myc manipulation

text: Mus musculus

text: Dox-inducible expression of Myc-WT

text: KPC cells

text: 10% U2OS cells (human)

text: Sample42: E275_input_etoh_dsRNA-seq

text: EtOH


text: live

text: Generic

text: pancreatic carcinoma

text: sequencing of double-stranded RNA

text: CRISPR/Cas9 knockout of Myc

text: Mus musculus

text: Dox-inducible expression of Myc-WT

characteristic: other manipulations

text: KPC cells

text: 10% U2OS cells (human)

text: Sample41: E275_input_dox_dsRNA-seq

text: Dox


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Genome sequencing of anaerobic fungi to study increased lignocellulose degradation

characteristic: description

text: Piromyces sp. UH3-1

characteristic: strain

text: Piromyces communis var. indianae UH3-1


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Piromyces sp. UH3-1 Transcriptome. RNA pooled from cultures grown on glucose, cellobiose, avicel, corn stover, orange peel, sugar cane, poplar, or alfalfa

text: Piromyces sp. UH3-1

text: Piromyces communis var. indianae UH3-1

characteristic: title


text: National Institute on Aging

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Kmt2d ChIP-Seq

characteristic: Sequencing Type

text: T-cells

text: Naïve CD8+

text: young

characteristic: dev stage

text: unstimulated cells

characteristic: isolate

text: Mus musculus

text: pooled male and female

characteristic: sex

text: Kmt2dWT (Kmt2d-floxed)

text: spleen

characteristic: tissue

text: Model organism or animal sample from Mus musculus


text: National Institute on Aging

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Kmt2d ChIP-Seq

text: T-cells

text: Naïve CD8+

text: young

text: cells stimulated with anti-CD3/CD28

text: Mus musculus

text: pooled male and female

text: Kmt2dWT (Kmt2d-floxed)

text: spleen


characteristic: External Id

text: National Institute on Aging

text: live

text: Model organism or animal

characteristic: SRA accession

text: H3K4me1 ChIP-Seq

text: T-cells

characteristic: cell type

text: Naïve CD8+

text: young

text: unstimulated cells

text: Mus musculus

characteristic: organism

text: pooled male and female

text: Kmt2d-/- (Kmt2d-floxed-CD4-Cre)

text: spleen


text: National Institute on Aging

text: live

text: Model organism or animal

text: H3K4me1 ChIP-Seq

text: T-cells

text: Naïve CD8+

text: young

text: cells stimulated with anti-CD3/CD28

text: Mus musculus

text: pooled male and female

text: Kmt2d-/- (Kmt2d-floxed-CD4-Cre)

characteristic: strain

text: spleen

characteristic: title


text: National Institute on Aging

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: H3K4me1 ChIP-Seq

characteristic: Sequencing Type

text: T-cells

text: Naïve CD8+

text: young

text: unstimulated cells

text: Mus musculus

text: pooled male and female

text: Kmt2dWT (Kmt2d-floxed)

text: spleen


text: National Institute on Aging

text: live

text: Model organism or animal

text: H3K4me1 ChIP-Seq

text: T-cells

text: Naïve CD8+

text: young

characteristic: dev stage

text: cells stimulated with anti-CD3/CD28

characteristic: isolate

text: Mus musculus

text: pooled male and female

text: Kmt2dWT (Kmt2d-floxed)

text: spleen


text: Beijing Normal University

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China

characteristic: geo loc name

text: laboratory

characteristic: host

text: biological sample from JEC21

characteristic: isolation source

text: Cryptococcus neoformans

text: single cell

characteristic: sample type

text: serotype D JEC21

text: Microbe sample from Cryptococcus neoformans


text: Beijing Normal University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: China

text: laboratory

text: biological sample from JEC21

text: Cryptococcus neoformans

text: single cell

text: serotype D JEC21


characteristic: External Id

text: Beijing Normal University

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: China

text: laboratory

text: biological sample from FOA

text: Cryptococcus neoformans

characteristic: organism

text: single cell

text: serotype D JEC21


text: Beijing Normal University

text: live

text: Microbe, viral or environmental

text: China

text: laboratory

text: biological sample from FOA

text: Cryptococcus neoformans

text: single cell

text: serotype D JEC21

characteristic: strain

characteristic: title


text: Bioinformatics Core, MRC London Institute of Medical Sciences

characteristic: INSDC secondary accession

text: live

text: Generic

text: IMR90 ER:RAS

characteristic: cell line

characteristic: days after 4oht

text: Homo sapiens

characteristic: passage

text: IMR90 ER:RAS

text: 3DA + 4OHT

characteristic: treatment


text: live

text: Generic

text: IMR90 ER:RAS

text: Homo sapiens

text: IMR90 ER:RAS


text: live

text: Generic

text: IMR90 ER:RAS

text: Homo sapiens

text: IMR90 ER:RAS

text: DMSO


text: live

text: Generic

text: IMR90 ER:RAS

text: Homo sapiens

text: IMR90 ER:RAS

text: shAHCY_4 (+4OHT)


text: live

text: Generic

text: IMR90 ER:RAS

text: Homo sapiens

text: IMR90 ER:RAS

text: shAHCY_2 (+4OHT)


text: live

text: Generic

text: IMR90 ER:RAS

text: Homo sapiens

text: IMR90 ER:RAS

text: senescent cells (EV+4OHT)


text: live

text: Generic

text: IMR90 ER:RAS

text: Homo sapiens

text: IMR90 ER:RAS

text: non-senescent cells (EV)


text: live

text: Generic

text: IMR90 ER:RAS

text: anti-H3K36me3 (Cell Signaling Technologies, #4909)

characteristic: chip antibody

text: Homo sapiens

text: IMR90 ER:RAS


characteristic: INSDC center name

text: live

text: Generic

text: IMR90 ER:RAS

text: Homo sapiens

text: IMR90 ER:RAS

text: DMSO


characteristic: INSDC first public

text: live

text: Generic

text: IMR90 ER:RAS

text: none (input)

text: Homo sapiens

text: IMR90 ER:RAS

text: DMSO


characteristic: INSDC last update

text: live

text: Generic

text: IMR90 ER:RAS

text: none (input)

text: Homo sapiens

text: IMR90 ER:RAS


text: Dalian Ocean University

text: live

characteristic: INSDC status

text: Generic

text: 118 ± 7.5 g

characteristic: average size

text: Vibrio harveyi infection

characteristic: infection

text: Takifugu rubripes

text: spleen

text: spleen

characteristic: tissue

text: Vibrio harveyi at concentration of 2.5x 10e7 CFU/mL


characteristic: External Id

text: Dalian Ocean University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 118 ± 7.5 g

text: control

text: Takifugu rubripes

text: spleen

text: spleen

text: clean seawater


text: Dalian Ocean University

characteristic: INSDC secondary accession

text: live

text: Generic

text: 118 ± 7.5 g

text: Vibrio harveyi infection

text: Takifugu rubripes

characteristic: organism

text: gill

text: gill

characteristic: title


text: Dalian Ocean University

text: live

text: Generic

text: 118 ± 7.5 g

text: control

text: Takifugu rubripes

text: gill

text: gill

text: clean seawater


text: Southern University of Science and Technology

text: live

text: Plant

text: seed

characteristic: dev stage

text: Columbia

characteristic: ecotype

text: Arabidopsis thaliana

text: seed

text: Plant sample from Arabidopsis thaliana


text: live

text: Plant

text: seedling

text: Columbia

text: Arabidopsis thaliana

text: seedling

text: Plant sample from Arabidopsis thaliana


text: live

text: Plant

text: rz-1b rz-1c

characteristic: cultivar

text: seed

text: Columbia

text: Arabidopsis thaliana

text: seed

text: Plant sample from Arabidopsis thaliana


characteristic: INSDC center name

text: live

text: Plant

text: rz-1b rz-1c

text: seedling

text: Columbia

text: Arabidopsis thaliana

text: seedling

text: Plant sample from Arabidopsis thaliana


characteristic: INSDC first public

text: live

text: Plant

text: swn-clf

text: seed

text: Columbia

text: Arabidopsis thaliana

text: seed

text: Plant sample from Arabidopsis thaliana


characteristic: INSDC last update

text: live

text: Plant

text: swn-clf

text: seedling

text: Columbia

text: Arabidopsis thaliana

text: seedling

text: Plant sample from Arabidopsis thaliana


text: live

characteristic: INSDC status

text: Plant

text: rz-1b rz-1c swn-clf

text: seed

text: Columbia

text: Arabidopsis thaliana

text: seed

text: Plant sample from Arabidopsis thaliana


text: Lanhou University

text: live

text: Metagenome or environmental

characteristic: collection date

text: China: dingxi

characteristic: geo loc name

text: control

characteristic: group

text: soil

characteristic: host

text: not collected

characteristic: lat lon

text: soil metagenome

text: biological repicate 1

characteristic: replicate

text: Metagenome or environmental sample from soil metagenome


characteristic: External Id

text: Lanhou University

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: China: dingxi

text: control

text: soil

text: not collected

text: soil metagenome

text: biological repicate 2


text: Lanhou University

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: China: dingxi

text: control

text: soil

text: not collected

text: soil metagenome

characteristic: organism

text: biological repicate 3

characteristic: title


text: Lanhou University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: China: dingxi

text: blank

text: soil

text: not collected

text: soil metagenome

text: biological repicate 1


text: Lanhou University

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: China: dingxi

text: blank

text: soil

text: not collected

text: soil metagenome

text: biological repicate 2


text: Lanhou University

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: China: dingxi

text: blank

text: soil

text: not collected

text: soil metagenome

text: biological repicate 3


text: Lanhou University

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: China: dingxi

text: soil

text: not collected

text: soil metagenome

text: biological repicate 1


text: Lanhou University

text: live

text: Metagenome or environmental

characteristic: collection date

text: China: dingxi

text: soil

text: not collected

text: soil metagenome

text: biological repicate 2


text: Lanhou University

text: live

text: Metagenome or environmental

text: China: dingxi

characteristic: geo loc name

text: soil

text: not collected

text: soil metagenome

text: biological repicate 3


lion-head goose

text: Biozeron Shenzhen Inc.

text: live

text: Model organism or animal

text: Lion-head Goose

characteristic: breed

text: adult

characteristic: dev stage

text: Anser cygnoides

text: female

characteristic: sex

text: blood

characteristic: tissue

text: Model organism or animal sample from Anser cygnoides


characteristic: External Id

text: fungi

characteristic: IFSAC Category

text: FDA Center for Food Safety and Applied Nutrition

text: live

text: Pathogen.env

characteristic: PublicAccession

text: FDA

characteristic: collected by

characteristic: fda lab id

text: Listeria

characteristic: genus

text: South Korea

text: enoki mushroom

characteristic: isolation source

characteristic: ontological term

text: Listeria monocytogenes

text: GenomeTrakr

characteristic: project name

text: United States Food and Drug Administration|Office of Regulatory Affairs|Pacific Southwest Food and Feed Laboratory

characteristic: sequenced by

text: food

characteristic: source type

text: monocytogenes

characteristic: species

characteristic: strain

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: cow

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: ProjectAccession

characteristic: SRA accession

text: environmental/food/other

text: OADDL - OK

characteristic: collection date

text: Salmonella

text: USA:OK

characteristic: geo loc name

text: lung (Bos taurus)

text: bos taurus:NCBITAXON_9913, lung:UBERON_0002048

text: Salmonella enterica

characteristic: organism

text: animal

text: enterica

text: Pathogen: environmental/food/other sample from Salmonella enterica

characteristic: title


characteristic: External Id

text: NATIONAL INSTITUTE OF TECHNOLOGY DURGAPUR

text: live

text: Metagenome or environmental

text: India:Koyna-Warna region, Maharashtra

text: Enrichment cultures of deep granitic rock sample

text: 17.2406 N 73.4508 E

text: subsurface metagenome

text: C1_Polymeric carbon


text: live

text: Metagenome or environmental

text: India:Koyna-Warna region, Maharashtra

text: 17.2406 N 73.4508 E

text: subsurface metagenome

text: C2_Polymeric carbon


text: live

text: Metagenome or environmental

text: India:Koyna-Warna region, Maharashtra

text: 17.2406 N 73.4508 E

text: subsurface metagenome

text: C3_Polymeric carbon


text: live

text: Metagenome or environmental

text: India:Koyna-Warna region, Maharashtra

text: 17.2406 N 73.4508 E

text: subsurface metagenome

text: C4_Polymeric carbon


text: live

text: Metagenome or environmental

text: India:Koyna-Warna region, Maharashtra

text: 17.2406 N 73.4508 E

text: subsurface metagenome

text: C6_Polymeric carbon


text: live

text: Metagenome or environmental

text: India:Koyna-Warna region, Maharashtra

text: 17.2406 N 73.4508 E

text: subsurface metagenome

text: C7_Polymeric carbon


text: Bickmore, IGMM, HGU, University of Edinburgh

text: live

text: Generic

characteristic: genotype

text: Homo sapiens

text: HCT116 MCM2-AID

text: Auxin

characteristic: treatment


text: live

text: Generic

text: Homo sapiens

text: HCT116 MCM2-AID

text: DMSO


text: Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge Institute of Therapeutic Immunology and Infectious Disease

text: live

text: Generic

text: 6-10 week old

characteristic: age

text: Bone marrow-derived dendritic cells

characteristic: cell type

text: Mus musculus

text: BMDCs (cDC1 subset)

characteristic: strain


text: UCSD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: Homo sapiens

text: breast cancer cell line


text: UCSD

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: breast cancer cell line

text: siControl


text: UCSD

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Flag antibody (Cell signaling 14793)

characteristic: antibody

characteristic: cell line

text: Homo sapiens

text: breast cancer cell line


text: Sheba Medical Center at Tel HaShomer

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: MRC5 cell line

text: lung fibroblast cell line

characteristic: tissue

characteristic: title

text: Infected with HCoV-229E virus for 72 hours


characteristic: External Id

text: Sheba Medical Center at Tel HaShomer

text: live

text: Generic

text: Homo sapiens

text: MRC5 cell line

text: lung fibroblast cell line

text: Infected with HCoV-229E virus for 48 hours

characteristic: treatment


text: Sheba Medical Center at Tel HaShomer

text: live

text: Generic

text: Homo sapiens

text: MRC5 cell line

text: lung fibroblast cell line

text: Infected with HCoV-229E virus for 6 hours


text: Sheba Medical Center at Tel HaShomer

text: live

text: Generic

text: Homo sapiens

text: MRC5 cell line

text: lung fibroblast cell line

text: Infected with HCoV-229E virus for 24 hours


text: Sheba Medical Center at Tel HaShomer

text: live

text: Generic

text: Homo sapiens

text: MRC5 cell line

text: lung fibroblast cell line

text: Untreated


text: Bonasio, Cell and Developmental Biology, University of Pennsylvania

text: live

text: Generic

text: MTF2-AID, Tir1

characteristic: genotype

text: 12 hours

characteristic: length of treatment

text: Mus musculus

text: ESCs

text: RNAseq - MTF2-AID ESCs day 0 - untreated - rep2

text: untreated


characteristic: INSDC center name

text: live

text: Generic

text: MTF2-AID, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

characteristic: strain

text: RNAseq - MTF2-AID ESCs day 0 - untreated - rep1

text: untreated


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: AID-JARID2, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - AID-JARID2 NPCs day 0 - auxin - rep3

text: auxin


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: AID-JARID2, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - AID-JARID2 NPCs day 0 - auxin - rep2

text: auxin


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: AID-JARID2, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - AID-JARID2 NPCs day 0 - auxin - rep1

text: auxin


text: live

text: Generic

characteristic: SRA accession

text: AID-JARID2, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - AID-JARID2 NPCs day 0 - untreated - rep3

text: untreated


text: live

text: Generic

text: AID-JARID2, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - AID-JARID2 NPCs day 0 - untreated - rep2

text: untreated


text: live

text: Generic

text: SUZ12-AID, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - SUZ12-AID ESCs day 0 - auxin - rep3

text: auxin


text: live

text: Generic

text: SUZ12-AID, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - SUZ12-AID ESCs day 0 - auxin - rep2

text: auxin


text: live

text: Generic

text: SUZ12-AID, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - SUZ12-AID ESCs day 0 - auxin - rep1

text: auxin


text: live

text: Generic

text: SUZ12-AID, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - SUZ12-AID ESCs day 0 - untreated - rep3

text: untreated


text: live

text: Generic

text: SUZ12-AID, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - SUZ12-AID ESCs day 0 - untreated - rep2

text: untreated


text: live

text: Generic

text: SUZ12-AID, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - SUZ12-AID ESCs day 0 - untreated - rep1

text: untreated


text: live

text: Generic

text: untagged, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - untagged ESCs day 0 - auxin - rep3

text: auxin


text: live

text: Generic

text: untagged, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - untagged ESCs day 0 - auxin - rep2

text: auxin


text: live

text: Generic

text: untagged, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - untagged ESCs day 0 - auxin - rep1

text: auxin


text: Bonasio, Cell and Developmental Biology, University of Pennsylvania

text: live

text: Generic

text: untagged, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - untagged ESCs day 0 - untreated - rep3

text: untreated


text: live

text: Generic

text: untagged, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - untagged ESCs day 0 - untreated - rep2

text: untreated


text: live

text: Generic

text: untagged, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - untagged ESCs day 0 - untreated - rep1

text: untreated


text: live

text: Generic

text: AID-JARID2, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - AID-JARID2 NPCs day 0 - untreated - rep1

text: untreated


text: live

text: Generic

text: MTF2-AID, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - MTF2-AID NPCs day 0 - auxin - rep3

text: auxin


text: live

text: Generic

text: MTF2-AID, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - MTF2-AID NPCs day 0 - auxin - rep2

text: auxin


text: live

text: Generic

text: MTF2-AID, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - MTF2-AID NPCs day 0 - auxin - rep1

text: auxin


text: live

text: Generic

text: MTF2-AID, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - MTF2-AID NPCs day 0 - untreated - rep3

text: untreated


text: live

text: Generic

text: MTF2-AID, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - MTF2-AID NPCs day 0 - untreated - rep2

text: untreated


text: live

text: Generic

text: MTF2-AID, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - MTF2-AID NPCs day 0 - untreated - rep1

text: untreated


text: live

text: Generic

text: SUZ12-AID, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - SUZ12-AID NPCs day 5 - auxin - rep2

text: auxin


text: live

text: Generic

text: SUZ12-AID, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - SUZ12-AID NPCs day 5 - auxin - rep1

text: auxin


text: live

text: Generic

text: SUZ12-AID, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - SUZ12-AID NPCs day 5 - untreated - rep3

text: untreated


text: live

text: Generic

text: SUZ12-AID, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - SUZ12-AID NPCs day 5 - untreated - rep2

text: untreated


text: live

text: Generic

text: SUZ12-AID, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - SUZ12-AID NPCs day 5 - untreated - rep1

text: untreated


text: live

text: Generic

text: untagged, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - untagged NPCs day 5 - auxin - rep3

text: auxin


text: Bonasio, Cell and Developmental Biology, University of Pennsylvania

text: live

text: Generic

text: untagged, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - untagged NPCs day 5 - auxin - rep2

text: auxin


text: live

text: Generic

text: untagged, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - untagged NPCs day 5 - auxin - rep1

text: auxin


text: live

text: Generic

text: untagged, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - untagged NPCs day 5 - untreated - rep3

text: untreated


text: live

text: Generic

text: untagged, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - untagged NPCs day 5 - untreated - rep2

text: untreated


text: live

text: Generic

text: untagged, Tir1

text: 5 days

text: Mus musculus

text: NPCs

text: RNAseq - untagged NPCs day 5 - untreated - rep1

text: untreated


text: live

text: Generic

text: AID-JARID2, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - AID-JARID2 ESCs day 0 - auxin - rep3

text: auxin


text: live

text: Generic

text: AID-JARID2, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - AID-JARID2 ESCs day 0 - auxin - rep2

text: auxin


text: live

text: Generic

text: AID-JARID2, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - AID-JARID2 ESCs day 0 - auxin - rep1

text: auxin


text: live

text: Generic

text: AID-JARID2, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - AID-JARID2 ESCs day 0 - untreated - rep3

text: untreated


text: live

text: Generic

text: AID-JARID2, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - AID-JARID2 ESCs day 0 - untreated - rep2

text: untreated


text: live

text: Generic

text: AID-JARID2, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - AID-JARID2 ESCs day 0 - untreated - rep1

text: untreated


text: live

text: Generic

text: MTF2-AID, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - MTF2-AID ESCs day 0 - auxin - rep3

text: auxin


text: live

text: Generic

text: MTF2-AID, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - MTF2-AID ESCs day 0 - auxin - rep2

text: auxin


text: live

text: Generic

text: MTF2-AID, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - MTF2-AID ESCs day 0 - auxin - rep1

text: auxin


text: live

text: Generic

text: MTF2-AID, Tir1

text: 12 hours

text: Mus musculus

text: ESCs

text: RNAseq - MTF2-AID ESCs day 0 - untreated - rep3

text: untreated


text: live

text: Generic

text: Cell Signaling #3737

characteristic: antibody

characteristic: epitope

text: untagged, Tir1

text: Mus musculus

text: NPCs

text: CUT&RUN NPC SUZ12 - rep1

text: untreated


text: live

text: Generic

text: Abcam #ab8580

text: untagged, Tir1

text: Mus musculus

characteristic: organism

text: ESCs

text: CUT&RUN ESC H3K4me3 - rep2

text: untreated


text: live

text: Generic

text: Cell Signaling #9733 (C36B11)

text: untagged, Tir1

text: Mus musculus

text: ESCs

text: CUT&RUN ESC H3K27me3 - rep2

characteristic: title

text: untreated


characteristic: External Id

text: live

text: Generic

text: Proteintech #16208-1-AP

text: untagged, Tir1

text: Mus musculus

text: ESCs

text: CUT&RUN ESC MTF2 - rep2

text: untreated


text: live

text: Generic

text: Bonasio lab (Kaneko et al., 2014)

text: untagged, Tir1

text: Mus musculus

text: ESCs

text: CUT&RUN ESC JARID2 - rep2

text: untreated

characteristic: treatment


text: live

text: Generic

text: Cell Signaling #3737

text: untagged, Tir1

characteristic: genotype

text: Mus musculus

text: ESCs

text: CUT&RUN ESC SUZ12 - rep2

text: untreated


text: live

text: Generic

text: IgG

text: untagged, Tir1

text: Mus musculus

text: ESCs

text: CUT&RUN ESC IgG - rep1

text: untreated


text: live

text: Generic

text: Abcam #ab8580

text: untagged, Tir1

text: Mus musculus

text: ESCs

text: CUT&RUN ESC H3K4me3 - rep1

text: untreated


text: live

text: Generic

text: Cell Signaling #9733 (C36B11)

text: untagged, Tir1

text: Mus musculus

text: ESCs

text: CUT&RUN ESC H3K27me3 - rep1

text: untreated


text: live

text: Generic

text: Proteintech #16208-1-AP

text: untagged, Tir1

text: Mus musculus

text: ESCs

text: CUT&RUN ESC MTF2 - rep1

text: untreated


text: live

text: Generic

text: Bonasio lab (Kaneko et al., 2014)

text: untagged, Tir1

text: Mus musculus

text: ESCs

text: CUT&RUN ESC JARID2 - rep1

text: untreated


text: live

text: Generic

text: Cell Signaling #3737

text: untagged, Tir1

text: Mus musculus

text: ESCs

text: CUT&RUN ESC SUZ12 - rep1

text: untreated


text: live

text: Generic

text: Abcam #ab8580

text: untagged, Tir1

text: Mus musculus

text: NPCs

text: CUT&RUN NPC H3K4me3 - rep2

text: untreated


text: live

text: Generic

text: Cell Signaling #9733 (C36B11)

text: untagged, Tir1

text: Mus musculus

text: NPCs

text: CUT&RUN NPC H3K27me3 - rep2

text: untreated


text: live

text: Generic

text: Proteintech #16208-1-AP

text: untagged, Tir1

text: Mus musculus

text: NPCs

text: CUT&RUN NPC MTF2 - rep2

text: untreated


text: live

text: Generic

text: Bonasio lab (Kaneko et al., 2014)

text: untagged, Tir1

text: Mus musculus

text: NPCs

text: CUT&RUN NPC JARID2 - rep2

text: untreated


text: live

text: Generic

text: Cell Signaling #3737

text: untagged, Tir1

text: Mus musculus

text: NPCs

text: CUT&RUN NPC SUZ12 - rep2

text: untreated


text: live

text: Generic

text: IgG

text: untagged, Tir1

text: Mus musculus

text: NPCs

text: CUT&RUN NPC IgG - rep1

text: untreated


text: live

text: Generic

text: Abcam #ab8580

text: untagged, Tir1

text: Mus musculus

text: NPCs

text: CUT&RUN NPC H3K4me3 - rep1

text: untreated


text: live

text: Generic

text: Cell Signaling #9733 (C36B11)

text: untagged, Tir1

text: Mus musculus

text: NPCs

text: CUT&RUN NPC H3K27me3 - rep1

text: untreated


text: live

text: Generic

text: Proteintech #16208-1-AP

text: untagged, Tir1

text: Mus musculus

text: NPCs

text: CUT&RUN NPC MTF2 - rep1

text: untreated


text: live

text: Generic

text: Bonasio lab (Kaneko et al., 2014)

text: untagged, Tir1

text: Mus musculus

text: NPCs

text: CUT&RUN NPC JARID2 - rep1

text: untreated


text: DTB, NIH

text: live

text: Generic

text: ATACC

characteristic: cell line

text: Monoclonal ANTI-FLAG® M2 antibody, Sigma-Aldrich, Cat# F1804

characteristic: chip antibody

text: Homo sapiens

characteristic: passages

text: Human embryonic kidney 293 cells (HEK293 cell line)

text: R338W TOP3B RIP sample


text: DTB, NIH

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: ATACC

text: Homo sapiens

text: R338W TOP3B INPUT sample


text: Nanjing Drum Tower Hospital

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China: Jiangsu,Nanjing

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: bile

characteristic: isolation source

text: Escherichia coli

text: assembly

characteristic: sample type

characteristic: strain


text: Nanjing Drum Tower Hospital

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: China: Jiangsu,Nanjing

text: Homo sapiens

text: urine

text: Escherichia coli

characteristic: organism

text: assembly


characteristic: External Id

text: Chinese Academy of Agricultural Sciences

characteristic: INSDC secondary accession

text: live

text: Invertebrate

characteristic: SRA accession

text: Larvae

characteristic: age

text: China: Yunnan

text: Strain ofSpodoptera frugiperda collected in Yunnan, China

characteristic: isolate

text: Individuals of Spodoptera frugiperda were cellected in Yunnan province, China

text: Spodoptera frugiperda

text: Whole body

characteristic: tissue

text: Invertebrate sample from Spodoptera frugiperda

characteristic: title


text: Shanxi Medical University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

characteristic: sex

text: primary tumor region 1

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: primary tumor region 2

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: primary tumor region 3

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: primary tumor region 4

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: primary tumor region 5

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: primary tumor region 2

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: primary tumor region 3

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: primary tumor region 4

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: primary tumor region 5

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: metastatic lymph node 1

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: metastatic lymph node 2

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: metastatic lymph node 3

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: primary tumor region 1

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: metastatic lymph node

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: metastatic lymph node 1

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: metastatic lymph node 2

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: metastatic lymph node 3

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: primary tumor region 1

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: primary tumor region 2

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: primary tumor region 3

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: primary tumor region 4

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: primary tumor region 5

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: primary tumor region 2

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: primary tumor region 3

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: primary tumor region 4

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: primary tumor region 5

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: male

text: non-tumor tissue

text: Human sample from Homo sapiens


text: Shanxi Medical University

text: live

text: Human

text: Tumor Biobank, Shanxi Cancer Hospital

text: Homo sapiens

text: female

text: non-tumor tissue

text: Human sample from Homo sapiens


text: live

text: Invertebrate

text: Nymphs at the third day after hatching rep1

characteristic: description

text: China: Anhui

text: Strain of Myzus persicae collected in Anhui province in China

text: Individuals of Myzus persicae were cellected in Anhui province in China

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


text: live

text: Invertebrate

text: Nymphs at the third day after hatching rep2

text: China: Anhui

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


text: live

text: Invertebrate

text: Nymphs at the third day after hatching rep3

text: China: Anhui

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


text: live

text: Invertebrate

text: Nymphs at the third day after hatching rep4

text: China: Anhui

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


text: live

text: Invertebrate

text: Nymphs at the third day after hatching rep5

text: China: Anhui

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


text: live

text: Invertebrate

text: Nymphs at the third day after hatching rep6

text: China: Anhui

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


text: live

text: Invertebrate

text: Wingless adults at the first day rep1

text: China: Anhui

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


text: live

text: Invertebrate

text: Wingless adults at the first day rep2

text: China: Anhui

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


text: live

text: Invertebrate

text: Wingless adults at the first day rep3

text: China: Anhui

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


text: live

text: Invertebrate

text: Wingless adults at the first day rep4

text: China: Anhui

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


text: live

text: Invertebrate

text: Wingless adults at the first day rep5

text: China: Anhui

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


text: live

text: Invertebrate

text: Wingless adults at the first day rep6

text: China: Anhui

text: Myzus persicae

text: Whole body

text: Invertebrate sample from Myzus persicae


NSJ-40 of Tianshia hominis

text: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China:Beijing

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: feces

characteristic: isolation source

text: Yeguia hominis

text: cell culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Tianshia hominis

text: type strain of Yeguia hominis

characteristic: type-material


NSJ-44 of Guopingia shanghaiensis

characteristic: External Id

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: China:Beijing

text: Homo sapiens

text: feces

text: Luoshenia tenuis

characteristic: organism

text: cell culture

text: Microbe sample from Guopingia shanghaiensis

text: type strain of Luoshenia tenuis


text: LMU Munich

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: SRA accession

text: adult

characteristic: dev stage

text: gens unknown

characteristic: ecotype

text: United Kingdom

characteristic: isolate

text: 52.470526 N 1.687814 E

characteristic: lat lon

text: Cuculus canorus

text: female

characteristic: specimen voucher

text: Feather

characteristic: tissue

text: 113_cuculuscanorus_britishtrustornitho_ENGLAND_F

characteristic: title


text: LMU Munich

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Model organism or animal

characteristic: collection date

characteristic: description

text: adult

text: gens unknown

text: United Kingdom

characteristic: geo loc name

text: 52.40516 N 0.62116 E

text: Cuculus canorus

text: (West)

characteristic: phenotype

text: male

characteristic: sex

text: Feather

text: 114_cuculuscanorus_britishtrustornitho_ENGLAND_M


characteristic: External Id

text: LMU Munich

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: adult

text: gens unknown

text: United Kingdom

text: 52.464942 N 0.677204 E

text: Cuculus canorus

characteristic: organism

text: East

text: male

text: Feather

text: 115_cuculuscanorus_britishtrustornitho_ENGLAND_M


text: LMU Munich

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: SRA accession

text: adult

characteristic: dev stage

text: gens unknown

characteristic: ecotype

text: United Kingdom

characteristic: isolate

text: 52.470526 N 1.687814 E

characteristic: lat lon

text: Cuculus canorus

text: West

text: male

text: Feather

text: 116_cuculuscanorus_britishtrustornitho_ENGLAND_M


text: LMU Munich

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Model organism or animal

characteristic: collection date

text: adult

text: gens unknown

text: United Kingdom

text: 53.15063 N 1.08256 E

text: Cuculus canorus

text: West

text: male

characteristic: specimen voucher

text: Feather

characteristic: tissue

text: 118_cuculuscanorus_britishtrustornitho_ENGLAND_M

characteristic: title


characteristic: External Id

text: LMU Munich

characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: description

text: adult

text: gens unknown

text: United Kingdom

characteristic: geo loc name

text: Cuculus canorus

text: female

characteristic: sex

text: Feather

text: 119_cuculuscanorus_britishtrustornitho_ENGLAND_F


text: LMU Munich

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: adult

text: gens unknown

text: United Kingdom

text: Cuculus canorus

characteristic: organism

text: female

text: Feather

text: 120_cuculuscanorus_britishtrustornitho_ENGLAND_F


text: National Taiwan University

text: live

text: Plant

characteristic: SRA accession

text: n. d.

characteristic: age

text: wild type

characteristic: cultivar

text: mature

characteristic: dev stage

text: wild type

characteristic: ecotype

text: Taiwan

text: Zanthoxylum ailanthoides

text: leaflet and rachis

text: Plant sample from Zanthoxylum ailanthoides


text: National Taiwan University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Plant

text: n. d.

text: wild type

text: rejuvenation by pruning

text: wild type

text: Taiwan

text: Zanthoxylum ailanthoides

text: leaflet and rachis

characteristic: tissue


characteristic: External Id

text: College of Biological Sciences, China Agricultural University

characteristic: INSDC center name

text: live

text: Generic

text: 6~8 weeks

text: LCKCre/+ Srsf1fl/fl

characteristic: genotype

text: Mus musculus

text: CD4+CD8+ DP cells (Thymus)

characteristic: strain

text: thymus

text: CD4+CD8+ DP cells (Thymus), KO2

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 6~8 weeks

text: LCKCre/+ Srsf1fl/fl

text: Mus musculus

text: CD4+CD8+ DP cells (Thymus)

text: thymus

text: CD4+CD8+ DP cells (Thymus), KO1


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 6~8 weeks

text: WT

text: Mus musculus

text: CD4+CD8+ DP cells (Thymus)

text: thymus

text: CD4+CD8+ DP cells (Thymus), WT2


text: live

text: Generic

characteristic: SRA accession

text: 6~8 weeks

text: WT

text: Mus musculus

characteristic: organism

text: CD4+CD8+ DP cells (Thymus)

text: thymus

text: CD4+CD8+ DP cells (Thymus), WT1


text: E226, Key Laboratory of Plant Molecular Physiology, insitute of botany, chinese academy of sciences

text: live

text: Generic

text: 10 d

characteristic: age

text: tic-2 -/-

text: MS+3% sucrose

characteristic: medium

text: Arabidopsis thaliana

text: whole seedling

characteristic: time point

text: tic-2_postdusk bio3


characteristic: INSDC first public

text: live

text: Generic

text: 10 d

characteristic: ecotype

text: tic-2 -/-

text: MS+3% sucrose

text: Arabidopsis thaliana

text: whole seedling

text: tic-2_postdusk bio2


characteristic: INSDC last update

text: live

text: Generic

text: 10 d

text: tic-2 -/-

text: MS+3% sucrose

text: Arabidopsis thaliana

text: whole seedling

text: tic-2_postdusk bio1


characteristic: External Id

text: live

text: Generic

text: 10 d

text: Wild type

text: MS+3% sucrose

text: Arabidopsis thaliana

text: whole seedling

text: Col_0_postdusk bio3


characteristic: INSDC center name

text: live

text: Generic

text: 10 d

text: Wild type

text: MS+3% sucrose

text: Arabidopsis thaliana

text: whole seedling

text: Col_0_postdusk bio2


text: live

text: Generic

text: 10 d

text: Wild type

characteristic: genotype

text: MS+3% sucrose

text: Arabidopsis thaliana

text: whole seedling

text: Col_0_postdusk bio1


text: live

text: Generic

text: 10 d

text: tic-2 -/-

text: MS+3% sucrose

text: Arabidopsis thaliana

text: whole seedling

text: tic-2_predawn bio3


text: live

text: Generic

text: 10 d

text: tic-2 -/-

text: MS+3% sucrose

text: Arabidopsis thaliana

text: whole seedling

text: tic-2_predawn bio2


text: live

text: Generic

text: 10 d

text: tic-2 -/-

text: MS+3% sucrose

text: Arabidopsis thaliana

text: whole seedling

text: tic-2_predawn bio1


text: live

text: Generic

text: 10 d

text: Wild type

text: MS+3% sucrose

text: Arabidopsis thaliana

text: whole seedling

text: Col_0_predawn bio3


text: live

text: Generic

text: 10 d

text: Wild type

text: MS+3% sucrose

text: Arabidopsis thaliana

text: whole seedling

text: Col_0_predawn bio2


text: live

text: Generic

text: 10 d

text: Wild type

text: MS+3% sucrose

text: Arabidopsis thaliana

text: whole seedling

text: Col_0_predawn bio1


text: k__Bacteria (UID2565)

characteristic: GC

text: Utrecht University

text: live

text: BWA-MEM v0.7.12-r1039

text: MIMAG.water

text: MAG

text: Medium Quality Draft

characteristic: assembly quality

text: metaSPAdes v3.8.0

characteristic: assembly software

text: kmer+coverage

text: MetaBAT v0.32.4

characteristic: binning software

characteristic: collection date

characteristic: completeness

text: CheckM v1.0.7 in lineage specific workflow

characteristic: completeness software

text: marker gene based

characteristic: contamination

text: 50-2000 m

characteristic: depth

text: This BioSample is a metagenomic assembly obtained from the 15 individual BioSamples: SAMN15667690, SAMN15667691, SAMN15667692, SAMN15667693, SAMN15667694, SAMN15667695, SAMN15667696, SAMN15667697, SAMN15667698, SAMN15667699, SAMN15667700, SAMN15667701, SAMN15667702, SAMN15667703, SAMN15667704.

text: MAG generated with MetaBAT v0.32.4 from the cross-assembly of 15 shotgun metagenomes across the Black Sea water column. Taxonomic classification is based on Bin Annotation Tool (BAT) v5.1.2 with reference databases dated 2020-07-22.

characteristic: description

text: marine

text: Black Sea

text: saline water

characteristic: environmental sample

characteristic: isolate

text: Suspended Particulate Matter (SPM) from the Black Sea western gyre

characteristic: isolation source

text: 42.896667 N 30.678333 E

characteristic: lat lon

text: marine metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Planctomycetota bacterium

text: no

text: McLane WTS_LV in situ pumps, pre-combusted glass fiber filters with 142 mm diameter and 0.7 um pore size

text: -80 degrees C

text: metagenomic assembly

characteristic: sample-type

text: > 0.7 um

text: metagenomic assembly

text: 2107 m


text: k__Bacteria (UID2565)

characteristic: External Id

characteristic: GC

text: Utrecht University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: BWA-MEM v0.7.12-r1039

text: MIMAG.water

characteristic: NCBI submission model

characteristic: NCBI submission package

text: MAG

text: High Quality Draft

text: metaSPAdes v3.8.0

text: kmer+coverage

text: MetaBAT v0.32.4

text: marker gene based

text: 50-2000 m

text: marine

text: Black Sea

text: saline water

text: 42.896667 N 30.678333 E

text: marine metagenome

text: Planctomycetota bacterium

characteristic: organism

text: no

text: -80 degrees C

text: metagenomic assembly

text: > 0.7 um

text: Bin Annotation Tool (BAT) v5.1.2 with reference databases dated 2020-07-22.

text: metagenomic assembly

characteristic: title

text: 2107 m


text: k__Bacteria (UID203)

text: Utrecht University

text: live

text: BWA-MEM v0.7.12-r1039

text: MIMAG.water

text: MAG

text: Low Quality Draft

characteristic: assembly quality

text: metaSPAdes v3.8.0

characteristic: assembly software

text: kmer+coverage

text: MetaBAT v0.32.4

characteristic: binning software

characteristic: collection date

characteristic: completeness

characteristic: completeness software

text: marker gene based

characteristic: contamination

text: 50-2000 m

characteristic: depth

characteristic: description

text: marine

text: Black Sea

text: saline water

characteristic: environmental sample

text: 42.896667 N 30.678333 E

text: marine metagenome

text: Planctomycetota bacterium

text: no

text: -80 degrees C

text: metagenomic assembly

text: > 0.7 um

text: metagenomic assembly

text: 2107 m


text: k__Bacteria (UID2565)

characteristic: External Id

characteristic: GC

text: Utrecht University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: BWA-MEM v0.7.12-r1039

text: MIMAG.water

text: MAG

text: Low Quality Draft

text: metaSPAdes v3.8.0

text: kmer+coverage

text: MetaBAT v0.32.4

text: marker gene based

text: 50-2000 m

text: marine

text: Black Sea

text: saline water

characteristic: isolate

characteristic: isolation source

text: 42.896667 N 30.678333 E

characteristic: lat lon

text: marine metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Planctomycetota bacterium

text: no

text: -80 degrees C

text: metagenomic assembly

characteristic: sample-type

text: > 0.7 um

text: metagenomic assembly

text: 2107 m


text: k__Bacteria (UID2565)

text: Utrecht University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: BWA-MEM v0.7.12-r1039

text: MIMAG.water

characteristic: NCBI submission model

characteristic: NCBI submission package

text: MAG

text: Medium Quality Draft

characteristic: assembly quality

text: metaSPAdes v3.8.0

characteristic: assembly software

text: kmer+coverage

text: MetaBAT v0.32.4

characteristic: binning software

characteristic: collection date

text: marker gene based

text: Bin Annotation Tool (BAT) v5.1.2 with reference databases dated 2020-07-22. Any sequence not classified as 'PVC group' was removed.

text: 50-2000 m

text: marine

text: Black Sea

text: saline water

text: 42.896667 N 30.678333 E

text: marine metagenome

text: Planctomycetota bacterium

characteristic: organism

text: no

text: -80 degrees C

text: metagenomic assembly

text: > 0.7 um

text: metagenomic assembly

characteristic: title

text: 2107 m


Babesia gibsoni M-replicate-1

characteristic: External Id

text: Huazhong agricultural university

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: SRA accession

characteristic: age

text: PCR

text: dog

text: Babesia gibsoni

text: male

characteristic: sex

characteristic: temp

text: biological replicate 1


text: Huazhong agricultural university

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: LAMP

text: dog

characteristic: isolate

text: Babesia gibsoni

text: male

text: biological replicate 2


Babesia gibsoni infection P-replicate-3

text: Huazhong agricultural university

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: RT-PCR

text: dog

text: Babesia gibsoni

text: female

text: biological replicate 3