text: Huazhong Agricultural University

characteristic: INSDC secondary accession

text: live

text: Plant

characteristic: SRA accession

text: TI 203

text: DNA resequencing of TI 203

characteristic: description

text: China:Huazhong Agricultural Univeristy

text: Nicotiana tabacum

text: leaves

text: Plant sample from Nicotiana tabacum


status: PUBLIC

characteristic: External Id

text: Huazhong Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

tag: attribute

characteristic: age

characteristic: cultivar

text: RNA-sequencing of NtsTOM2A near isogenic line, biological replicate 1

text: China:Huazhong Agricultural Univeristy

characteristic: geo loc name

text: Nicotiana tabacum

characteristic: organism

text: leaves

characteristic: tissue

text: Plant sample from Nicotiana tabacum

characteristic: title


text: Huazhong Agricultural University

text: live

text: Plant

text: RNA-sequencing of NtsTOM2A near isogenic line, biological replicate 2

text: China:Huazhong Agricultural Univeristy

text: Nicotiana tabacum

text: leaves

text: Plant sample from Nicotiana tabacum


text: Huazhong Agricultural University

text: live

text: Plant

text: TI 203_R1

text: RNA-sequencing of TI 203, biological replicate 1

text: China:Huazhong Agricultural Univeristy

text: Nicotiana tabacum

text: leaves

text: Plant sample from Nicotiana tabacum


text: Huazhong Agricultural University

text: live

text: Plant

text: TI 203_R2

text: RNA-sequencing of TI 203, biological replicate 2

text: China:Huazhong Agricultural Univeristy

text: Nicotiana tabacum

text: leaves

text: Plant sample from Nicotiana tabacum


text: wuhan university

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: thyroid carcinoma cells (CAL-62 cell line)

text: pull-down using azi-BIAN; during library preparation, pH 8.8 was used to make the 5-formyluracil sites read as cytosine

characteristic: treatment


text: wuhan university

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: pull-down using azi-BIAN; during library preparation, pH 7.2 was used to make the 5-formyluracil sites read as thymine


characteristic: External Id

text: wuhan university

text: live

text: Generic

text: Homo sapiens

text: without treatment


text: Beijing Institute of Radiation Medicine

characteristic: INSDC center name

text: live

text: Generic

text: M2 oocyte

characteristic: cell type

characteristic: generation

text: wild type

characteristic: genotype

text: Mus musculus

text: oocyte from young mother

characteristic: strain

text: oocyte from young mother rep2

text: wild type


text: Beijing Institute of Radiation Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from young mother

text: oocyte from young mother rep1

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

characteristic: age

text: M2 oocyte

text: wild type

text: Mus musculus

characteristic: organism

text: rapa-treated aged oocyte

text: rapa-treated aged oocyte rep3

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: rapa-treated aged oocyte

text: rapa-treated aged oocyte rep2

characteristic: title

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: rapa-treated aged oocyte

text: rapa-treated aged oocyte rep1

text: Rapa-treated

characteristic: treatment


text: Beijing Institute of Radiation Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: aged oocyte

text: aged oocyte rep3

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

characteristic: SRA accession

text: M2 oocyte

text: wild type

text: Mus musculus

text: aged oocyte

text: aged oocyte rep2

text: wild type


characteristic: External Id

text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: aged oocyte

text: aged oocyte rep1

text: wild type


text: Beijing Institute of Radiation Medicine

characteristic: INSDC center name

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: young oocyte

text: young oocyte rep3

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: M2 oocyte

characteristic: cell type

text: wild type

text: Mus musculus

text: young oocyte

text: young oocyte rep2

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: M2 oocyte

characteristic: generation

text: wild type

text: Mus musculus

text: young oocyte

text: young oocyte rep1

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: hippocampus

text: wild type

characteristic: genotype

text: Mus musculus

text: hippocampus from rapa-treated mother

text: hippocampus from rapa-treated mother rep3

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: hippocampus

text: wild type

text: Mus musculus

text: hippocampus from rapa-treated mother

characteristic: strain

text: hippocampus from rapa-treated mother rep2

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

characteristic: INSDC first public

text: live

text: Generic

text: hippocampus

text: wild type

text: Mus musculus

text: hippocampus from rapa-treated mother

text: hippocampus from rapa-treated mother rep1

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

characteristic: INSDC last update

text: live

text: Generic

text: hippocampus

text: wild type

text: Mus musculus

text: hippocampus from aged mother

text: hippocampus from aged mother rep3

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

characteristic: INSDC status

text: Generic

text: hippocampus

text: wild type

text: Mus musculus

text: hippocampus from aged mother

text: hippocampus from aged mother rep2

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

characteristic: NCBI submission model

text: sperm

text: wild type

text: Mus musculus

text: sperm from young mother

text: sperm from young mother rep1

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

characteristic: NCBI submission package

text: sperm

text: wild type

text: Mus musculus

text: sperm from rapa-treated mother

text: sperm from rapa-treated mother rep3

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

characteristic: age

text: sperm

text: wild type

text: Mus musculus

text: sperm from rapa-treated mother

text: sperm from rapa-treated mother rep2

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: sperm

text: wild type

text: Mus musculus

characteristic: organism

text: sperm from rapa-treated mother

text: sperm from rapa-treated mother rep1

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: sperm

text: wild type

text: Mus musculus

text: sperm from aged mother

text: sperm from aged mother rep1

characteristic: title

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from ORaF1

text: oocyte from ORaF1 rep2

text: Rapa-treated

characteristic: treatment


text: Beijing Institute of Radiation Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from ORaF1

text: oocyte from ORaF1 rep1

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

characteristic: SRA accession

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from OF1

text: oocyte from OF1 rep2

text: wild type


characteristic: External Id

text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from OF1

text: oocyte from OF1 rep1

text: wild type


text: Beijing Institute of Radiation Medicine

characteristic: INSDC center name

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from YF1

text: oocyte from YF1 rep3

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: sperm

characteristic: cell type

text: wild type

text: Mus musculus

text: sperm from aged mother

text: sperm from aged mother rep3

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: sperm

characteristic: generation

text: wild type

text: Mus musculus

text: sperm from aged mother

text: sperm from aged mother rep2

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: M2 oocyte

text: wild type

characteristic: genotype

text: Mus musculus

text: oocyte from YF1

text: oocyte from YF1 rep2

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from YF1

characteristic: strain

text: oocyte from YF1 rep1

text: wild type


text: Beijing Institute of Radiation Medicine

characteristic: INSDC first public

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from rapa-treated mother

text: oocyte from rapa-treated mother rep2

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

characteristic: INSDC last update

text: live

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from rapa-treated mother

text: oocyte from rapa-treated mother rep1

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

text: live

characteristic: INSDC status

text: Generic

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from aged mother

text: oocyte from aged mother rep3

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

characteristic: NCBI submission model

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from aged mother

text: oocyte from aged mother rep2

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

characteristic: NCBI submission package

text: M2 oocyte

text: wild type

text: Mus musculus

text: oocyte from aged mother

text: oocyte from aged mother rep1

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

characteristic: age

text: hippocampus

text: wild type

text: Mus musculus

text: hippocampus from aged mother

text: hippocampus from aged mother rep1

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: hippocampus

text: wild type

text: Mus musculus

characteristic: organism

text: hippocampus from young mother

text: hippocampus from young mother rep3

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: hippocampus

text: wild type

text: Mus musculus

text: hippocampus from young mother

text: hippocampus from young mother rep2

characteristic: title

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: hippocampus

text: wild type

text: Mus musculus

text: hippocampus from young mother

text: hippocampus from young mother rep1

text: wild type

characteristic: treatment


text: Beijing Institute of Radiation Medicine

characteristic: INSDC secondary accession

text: live

text: Generic

text: sperm

text: wild type

text: Mus musculus

text: sperm from ORaF1

text: sperm from ORaF1 rep3

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

characteristic: SRA accession

text: sperm

text: wild type

text: Mus musculus

text: sperm from ORaF1

text: sperm from ORaF1 rep2

text: Rapa-treated


characteristic: External Id

text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: sperm

text: wild type

text: Mus musculus

text: sperm from ORaF1

text: sperm from ORaF1 rep1

text: Rapa-treated


text: Beijing Institute of Radiation Medicine

characteristic: INSDC center name

text: live

text: Generic

text: sperm

text: wild type

text: Mus musculus

text: sperm from OF1

text: sperm from OF1 rep3

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: sperm

characteristic: cell type

text: wild type

text: Mus musculus

text: sperm from OF1

text: sperm from OF1 rep2

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: sperm

characteristic: generation

text: wild type

text: Mus musculus

text: sperm from OF1

text: sperm from OF1 rep1

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: sperm

text: wild type

characteristic: genotype

text: Mus musculus

text: sperm from young mother

text: sperm from young mother rep3

text: wild type


text: Beijing Institute of Radiation Medicine

text: live

text: Generic

text: sperm

text: wild type

text: Mus musculus

text: sperm from young mother

characteristic: strain

text: sperm from young mother rep2

text: wild type


text: Yokohama City University

characteristic: INSDC first public

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: 4C-seq, Krijger et al Methods, 170: 17-32; doi: 10.1016/j.ymeth.2019.07.014

characteristic: protocol/antibody

text: 4C-template DNA

characteristic: sequenced molecule

text: HEK293T EAF1-mutant

text: 4Cseq_293T-EAF1mut_HIST2H2AB-bait_Rep2_R1


text: Yokohama City University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Homo sapiens

text: 4C-template DNA

text: HEK293T EAF1-mutant

text: 4Cseq_293T-EAF1mut_HIST2H2AB-bait_Rep1_R1


text: Yokohama City University

text: live

text: Generic

text: Homo sapiens

characteristic: organism

text: 4C-template DNA

text: HEK293T EAF1-mutant

text: 4Cseq_293T-EAF1mut_HIST1H2BK-bait_Rep2_R1

characteristic: title


text: Yokohama City University

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Homo sapiens

text: 4C-template DNA

text: HEK293T EAF1-mutant

text: 4Cseq_293T-EAF1mut_HIST1H2BK-bait_Rep1_R1


characteristic: External Id

text: Yokohama City University

characteristic: INSDC center name

text: live

text: Generic

text: wildtype

text: Homo sapiens

text: ChIP/anti-ELL D7N6U , Cell Signaling cat 14468S

text: genomic DNA IP


text: Yokohama City University

text: live

text: Generic

text: wildtype

text: Homo sapiens

text: Input for ELL ChIP

text: genomic DNA Input


text: Yokohama City University

text: live

text: Generic

text: Homo sapiens

text: PRO-Seq, Mahat et al Nat Protoc, 11:1455-76; doi: 10.1038/nprot.2016.086

text: nascent RNA

text: HEK293T EAF1-mutant

text: Drosophila melanogaster

characteristic: spike-in source


text: Yokohama City University

text: live

text: Generic

text: wildtype

characteristic: genotype

text: Homo sapiens

text: nascent RNA

text: Drosophila melanogaster


text: Yokohama City University

text: live

text: Generic

text: Homo sapiens

text: Ribosome RNA-depleted RNA

text: total RNA

text: HEK293T EAF1-mutant


text: Yokohama City University

text: live

text: Generic

text: wildtype

text: Homo sapiens

text: Ribosome RNA-depleted RNA

text: total RNA


text: Yokohama City University

text: live

text: Generic

text: wildtype

text: Homo sapiens

text: Antibody-based biotinylation-seq/LSM11, Sigma-Aldrich Corp cat HPA039587

text: genomic DNA pulldown

text: Drosophila melanogaster

text: Biotinylation-seq_293T-WT_LSM11_pulldown_Rep2_R1


text: Yokohama City University

text: live

text: Generic

text: wildtype

text: Homo sapiens

text: Antibody-based biotinylation-seq/Coilin, Abcam cat ab11822

text: genomic DNA pulldown

text: Drosophila melanogaster

text: Biotinylation-seq_293T-WT_Coilin_pulldown_Rep2_R1


text: Yokohama City University

text: live

text: Generic

text: wildtype

text: Homo sapiens

text: genomic DNA pulldown

text: Drosophila melanogaster

text: Biotinylation-seq_293T-WT_Coilin_pulldown_Rep1_R1


text: Yokohama City University

text: live

text: Generic

text: wildtype

text: Homo sapiens

text: Input for antibody-based biotinylation-seq/Coilin, Abcam cat ab11822

text: genomic DNA Input

text: Drosophila melanogaster

text: Biotinylation-seq_293T-WT_Coilin_Input_R1


text: Yokohama City University

text: live

text: Generic

text: Homo sapiens

text: genomic DNA pulldown

text: HEK293T EAF1-mutant

text: Drosophila melanogaster

text: Biotinylation-seq_293T-EAF1mut_LSM11_pulldown_Rep2_R1


text: Yokohama City University

text: live

text: Generic

text: Homo sapiens

text: genomic DNA pulldown

text: HEK293T EAF1-mutant

text: Drosophila melanogaster

text: Biotinylation-seq_293T-EAF1mut_LSM11_pulldown_Rep1_R1


text: Yokohama City University

text: live

text: Generic

text: wildtype

text: Homo sapiens

text: genomic DNA pulldown

text: Drosophila melanogaster

text: Biotinylation-seq_293T-WT_LSM11_pulldown_Rep1_R1


text: Yokohama City University

text: live

text: Generic

text: wildtype

text: Homo sapiens

text: Input for antibody-based biotinylation-seq/LSM11, Sigma-Aldrich Corp cat HPA039587

text: genomic DNA Input

text: Drosophila melanogaster

text: Biotinylation-seq_293T-WT_LSM11_Input_R1


text: Yokohama City University

text: live

text: Generic

text: Homo sapiens

text: genomic DNA Input

text: HEK293T EAF1-mutant

text: Drosophila melanogaster

text: Biotinylation-seq_293T-EAF1mut_LSM11_Input_R1


text: Yokohama City University

text: live

text: Generic

text: Homo sapiens

text: genomic DNA pulldown

text: HEK293T EAF1-mutant

text: Drosophila melanogaster

text: Biotinylation-seq_293T-EAF1mut_Coilin_pulldown_Rep2_R1


text: Yokohama City University

text: live

text: Generic

text: Homo sapiens

text: genomic DNA pulldown

text: HEK293T EAF1-mutant

text: Drosophila melanogaster

text: Biotinylation-seq_293T-EAF1mut_Coilin_pulldown_Rep1_R1


text: Yokohama City University

text: live

text: Generic

text: Homo sapiens

text: genomic DNA Input

text: HEK293T EAF1-mutant

text: Drosophila melanogaster

text: Biotinylation-seq_293T-EAF1mut_Coilin_Input_R1


text: Yokohama City University

text: live

text: Generic

text: wildtype

text: Homo sapiens

text: 4C-seq, Krijger et al Methods, 170: 17-32; doi: 10.1016/j.ymeth.2019.07.014

text: 4C-template DNA


text: Immunology, Tianjin Medical University

text: live

text: Generic

text: scRNA-sequencing

characteristic: assay

text: SCLC

characteristic: cell type

text: Homo sapiens

text: Sorted human lung SCLC cells

characteristic: sample type

text: human SCLC


text: Purdue University

characteristic: INSDC first public

text: live

text: Invertebrate

characteristic: age

text: managed

characteristic: breed

characteristic: collection date

characteristic: description

text: Adult

characteristic: dev stage

text: Canada

characteristic: geo loc name

characteristic: isolation source

text: Apis mellifera

text: male

characteristic: sex

text: Brain

characteristic: tissue


characteristic: External Id

text: Purdue University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: managed

text: Adult

text: Canada

text: Apis mellifera

characteristic: organism

text: female

text: Brain

characteristic: title


text: Purdue University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Invertebrate

characteristic: age

text: managed

characteristic: breed

text: Adult

text: Canada

text: Apis mellifera

text: female

text: Ovary


text: Purdue University

text: live

text: Invertebrate

text: managed

characteristic: collection date

characteristic: description

text: Adult

characteristic: dev stage

text: Canada

characteristic: geo loc name

text: Apis mellifera

text: male

text: Gonadal


name: Uncultured bacterium CA1 16S ribosomal RNA gene raw sequence reads

characteristic: External Id

text: Capital Normal University

text: live

text: Microbe, viral or environmental

text: China:Beijing

text: sediment of Beijing Miyun reservoir riparian zone

characteristic: isolate

text: riparian zone in Beijing Miyun reservoir

characteristic: isolation source

text: 40.4416 N 116.818 E

characteristic: lat lon

text: uncultured bacterium

text: environmental samples

characteristic: sample type


name: Uncultured bacterium CA2 16S ribosomal RNA gene raw sequence reads

text: Capital Normal University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 40.4416 N 116.818 E

characteristic: altitude

text: China:Beijing

text: uncultured bacterium

text: environmental samples


Ddyer

text: Zhejiang University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Plant

characteristic: SRA accession

text: adult

text: China: Kunming Institute of Botany, Yunnan

text: Dipteronia dyeriana

characteristic: organism

text: leaf

characteristic: tissue

text: Plant sample from Dipteronia dyeriana

characteristic: title


Dsin

characteristic: External Id

text: Zhejiang University

text: live

text: Plant

text: adult

characteristic: dev stage

text: China: Niubeiliang Nature Reserve, Shaanxi

characteristic: geo loc name

text: NBL

text: Dipteronia sinensis

text: leaf

text: Plant sample from Dipteronia sinensis


text: Nankai University

text: live

text: MIMARKS.specimen

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: collection date

text: no

characteristic: cultivar

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: no

characteristic: ecotype

text: Nankai university

text: lab

text: mice

text: China:Tianjin

text: mice

characteristic: host

text: normal

text: no

characteristic: isolate

text: 39.34 N 117.36 E

characteristic: lat lon

text: gut metagenome

text: meta

characteristic: strain


text: University of California, Irvine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: China:Changzhou

text: soil sample1

text: soil metagenome


characteristic: External Id

text: University of California, Irvine

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: China:Changzhou

text: soil sample2

text: soil metagenome

characteristic: organism

characteristic: title


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample3

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample4

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample5

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample6

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample7

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample8

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample9

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample10

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample11

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample12

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample13

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample14

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample15

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample16

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample17

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample18

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample19

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample20

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample21

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample22

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample23

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample24

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample25

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample26

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample27

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample28

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample29

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample30

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample31

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample32

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample33

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample34

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample35

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample36

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample37

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample38

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample39

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample40

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample41

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample42

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample43

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample44

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample45

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample46

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample47

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample48

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample49

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample50

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample51

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample52

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample53

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample54

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample55

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample56

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample57

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample58

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample59

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample60

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample61

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample62

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample63

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample64

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample65

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample66

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample67

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample68

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample69

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample70

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample71

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample72

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample73

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample74

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample75

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample76

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample77

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample78

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample79

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample80

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample81

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample82

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample83

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample84

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample85

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample86

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample87

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample88

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample89

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample90

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample91

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample92

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample93

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample94

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample95

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample96

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample97

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample98

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample99

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample100

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample101

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample102

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample103

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample104

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample105

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample106

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample107

text: soil metagenome


text: University of California, Irvine

text: live

text: Metagenome or environmental

text: China:Changzhou

text: soil sample108

text: soil metagenome


Control

text: Nankai University

text: live

text: Metagenome or environmental

text: 10~12 week old

characteristic: age

characteristic: breed

characteristic: cultivar

text: final

characteristic: dev stage

text: mouse gut metagenome

text: male

characteristic: sex

text: intestine

characteristic: tissue


TCS

text: Nankai University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: 10~12 week old

text: final

characteristic: ecotype

characteristic: isolate

text: mouse gut metagenome

text: male

characteristic: strain

text: intestine


text: CNR - National Research Council

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

text: unguiculata

text: young leaves

text: Italy

text: Vigna unguiculata

text: Vigna young leaves

text: Vigna unguiculata: I_Bernalda


NC1 IP

characteristic: External Id

text: SYSU

characteristic: INSDC secondary accession

text: live

text: Human

characteristic: NCBI submission package

characteristic: SRA accession

text: Jinkai Wang

characteristic: biomaterial provider

text: Homo sapiens

text: male

text: brain

text: Human sample from Homo sapiens


NC2 IP

text: SYSU

text: live

text: Human

text: Jinkai Wang

text: Homo sapiens

characteristic: organism

text: male

text: brain

text: Human sample from Homo sapiens

characteristic: title


SRSF7 11 IP

text: SYSU

text: live

text: Human

text: Jinkai Wang

text: Homo sapiens

text: male

characteristic: sex

text: brain

text: Human sample from Homo sapiens


SRSF7 12 IP

text: SYSU

text: live

text: Human

text: Jinkai Wang

text: Homo sapiens

text: male

text: brain

characteristic: tissue

text: Human sample from Homo sapiens


NC1 input

text: SYSU

characteristic: INSDC center name

text: live

text: Human

text: Jinkai Wang

text: Homo sapiens

text: male

text: brain

text: Human sample from Homo sapiens


NC2 input

text: SYSU

text: live

text: Human

text: Jinkai Wang

text: Homo sapiens

text: male

text: brain

text: Human sample from Homo sapiens


SRSF7 11 input

text: SYSU

text: live

text: Human

text: Jinkai Wang

text: Homo sapiens

text: male

text: brain

text: Human sample from Homo sapiens


SRSF7 12 input

text: SYSU

text: live

text: Human

text: Jinkai Wang

text: Homo sapiens

text: male

text: brain

text: Human sample from Homo sapiens


SRSF7 si_CLIP

text: SYSU

text: live

text: Human

text: Jinkai Wang

text: Homo sapiens

text: male

text: brain

text: Human sample from Homo sapiens


text: CNR - National Research Council

text: live

text: Plant

text: unguiculata

characteristic: cultivar

text: young leaves

text: Italy

text: Vigna unguiculata

text: Vigna young leaves

text: Vigna unguiculata: I_Altamura


text: OE Biotech.co.Ltd

text: live

text: Plant

text: week

characteristic: age

text: China

characteristic: geo loc name

text: Tissue culture

characteristic: isolate

text: Populus trichocarpa

text: Tissue culture seedlings

text: Plant sample from Populus trichocarpa


text: Chinese Academy of Medical Sciences and Peking Union Medical College

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Metagenome or environmental

characteristic: collection date

text: China

text: American ginseng

characteristic: host

text: 40.041916 N 116.283906 E

characteristic: lat lon

text: rhizosphere metagenome


characteristic: External Id

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: China

text: American ginseng

text: 40.041914 N 116.283906 E

text: rhizosphere metagenome


text: live

text: Metagenome or environmental

characteristic: SRA accession

text: China

text: American ginseng

text: 40.041917 N 116.283902 E

text: rhizosphere metagenome

characteristic: organism

characteristic: title


characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: China

text: American ginseng

text: 40.041931 N 116.283902 E

text: rhizosphere metagenome


text: Renji Hospital

text: live

text: Metagenome or environmental

text: Wei Cao, Department Otorhinolaryngology, Head and Neck Surgery, The Second Hospital of Anhui Medical University, Hefei,China

characteristic: biomaterial provider

text: Homo sapiens

text: adenoids

characteristic: isolation source

text: human metagenome

text: male

characteristic: sex


text: Renji Hospital

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: Homo sapiens

text: adenoids

text: human metagenome

text: female


text: Renji Hospital

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: Homo sapiens

text: tonsils

text: human metagenome

text: male


text: Renji Hospital

text: live

text: Metagenome or environmental

text: Homo sapiens

text: tonsils

text: human metagenome

text: female


text: Renji Hospital

text: live

text: Metagenome or environmental

text: Homo sapiens

text: oropharynx swabs

text: human metagenome

text: male


text: Renji Hospital

text: live

text: Metagenome or environmental

text: Homo sapiens

text: oropharynx swabs

text: human metagenome

text: female


text: Renji Hospital

text: live

text: Metagenome or environmental

text: Homo sapiens

text: nasal swabs

text: human metagenome

text: male


text: Renji Hospital

text: live

text: Metagenome or environmental

text: Homo sapiens

text: nasal swabs

text: human metagenome

text: female


text: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences

text: live

text: MIGS.ba

characteristic: collection date

text: 20-25 cm

characteristic: depth

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: unknow

characteristic: elev

text: maize rhizosphere

text: soil rhizosphere

text: soil

text: China:Harbin

characteristic: geo loc name

text: KB medium

text: 45.83 N 126.85 E

text: one

text: unpublished

characteristic: strain

text: aurantiaca

characteristic: sub species

text: MIGS Cultured Bacterial/Archaeal sample from Pseudomonas chlororaphis subsp. aurantiaca


characteristic: External Id

text: Institute of Urban Environment, CAS

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMS:6.0

text: aquatic

text: Shidou Reservoir

text: freshwater

text: China: Xiamen

text: 24.702222 N 118.001111 E

text: freshwater metagenome

text: MIMS Environmental/Metagenome sample from freshwater metagenome


text: Institute of Urban Environment, CAS

characteristic: INSDC center name

text: live

text: MIMS.me

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIMS:6.0

text: aquatic

text: Shidou Reservoir

text: freshwater

text: China: Xiamen

text: 24.6925 N 118.009167 E

text: freshwater metagenome

characteristic: organism

characteristic: title


text: Institute of Urban Environment, CAS

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIMS.me

text: Keywords: GSC:MIxS;MIMS:6.0

text: aquatic

text: Shidou Reservoir

text: freshwater

text: China: Xiamen

text: 24.685 N 118.013889 E

text: freshwater metagenome


text: Institute of Urban Environment, CAS

text: live

text: MIMS.me

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:6.0

text: aquatic

text: Bantou Reservoir

text: freshwater

text: China: Xiamen

text: 24.680833 N 118.016111 E

text: freshwater metagenome


text: Institute of Urban Environment, CAS

text: live

text: MIMS.me

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: aquatic

text: Bantou Reservoir

text: freshwater

text: China: Xiamen

text: 24.674722 N 118.021389 E

text: freshwater metagenome


text: Institute of Urban Environment, CAS

text: live

text: MIMS.me

text: Keywords: GSC:MIxS;MIMS:6.0

text: aquatic

text: Bantou Reservoir

text: freshwater

text: China: Xiamen

text: 24.666389 N 118.026111 E

text: freshwater metagenome


text: Sidra Medicine

text: live

text: Viral

text: Stephen Elledge

characteristic: biomaterial provider

characteristic: collection date

text: Qatar

text: Escherichia coli

characteristic: host

characteristic: isolate

text: Stephen Elledge Lab

characteristic: isolation source

text: Escherichia phage T7


characteristic: External Id

text: Sichuan University

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: China:Chengdu

characteristic: geo loc name

text: compost sample

text: not collected

characteristic: lat lon

text: compost metagenome


A. nidulans AcuK and AcuM ChIPseq

text: University of Macau

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Aspergillus nidulans

text: WT (biA1)

characteristic: strain

text: Microbe sample from Aspergillus nidulans


Phyllostachys edulis

text: South China Botanical Garden

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Plant

characteristic: SRA accession

text: not collected

characteristic: age

text: not collected

characteristic: cultivar

text: not collected

characteristic: dev stage

text: perennial woody grasses

characteristic: ecotype

text: China: Hunan province, Changsha city, Lukou county

text: Phyllostachys edulis

characteristic: organism

text: not collected

characteristic: sex

text: shoot

characteristic: tissue

text: Plant sample from Phyllostachys edulis

characteristic: title


characteristic: External Id

text: Chinese Academy of Sciences

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: attribute

characteristic: collection date

text: 0 - 20 cm

characteristic: depth

text: not collected

characteristic: elev

text: not collected

text: not collected

text: China

characteristic: geo loc name

text: soil

characteristic: isolation source

text: 43.70 N 82.02 E

characteristic: lat lon

text: soil metagenome

text: Metagenome or environmental sample from soil metagenome


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: China

text: American ginseng

characteristic: host

text: 40.041916 N 116.283906 E

text: rhizosphere metagenome


characteristic: External Id

text: live

text: Metagenome or environmental

text: China

text: American ginseng

text: 40.041914 N 116.283906 E

text: rhizosphere metagenome

characteristic: organism

characteristic: title


characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: collection date

text: China

text: American ginseng

text: 40.041917 N 116.283902 E

text: rhizosphere metagenome


text: live

text: Metagenome or environmental

text: China

text: American ginseng

text: 40.041931 N 116.283902 E

text: rhizosphere metagenome


text: Institute of Marine Research

text: live

text: Model organism or animal

text: not collected

characteristic: age

text: juvenile

characteristic: dev stage

text: ['inshore', '']

characteristic: ecotype

characteristic: id

text: RIS

characteristic: location

text: Gadus morhua

text: not determined

characteristic: sex

text: Fin clip

characteristic: tissue

text: Model organism or animal sample from Gadus morhua


text: Institute of Marine Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: not collected

text: juvenile

text: ['inshore', '']

text: LIL

text: Gadus morhua

text: not determined

text: Fin clip


text: Institute of Marine Research

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: not collected

text: mature

text: ['offshore', '']

text: Gadus morhua

text: not determined

text: Fin clip


A. nidulans AlcR ChIPseq

characteristic: External Id

text: University of Macau

text: live

text: Microbe, viral or environmental

text: Aspergillus nidulans

characteristic: organism

text: WT (biA1)

characteristic: strain

characteristic: title


Strain CX03

characteristic: INSDC secondary accession

text: live

text: MIGS.ba

characteristic: collection date

text: 20-25 cm

characteristic: depth

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: unknow

characteristic: elev

text: pepper rhizosphere

text: soil rhizosphere

text: soil

text: China:Guizhou

characteristic: geo loc name

text: LB medium

text: 28.25 N 108.30 E

characteristic: lat lon

text: one

text: Lysobacter enzymogenes

text: unpublished

text: MIGS Cultured Bacterial/Archaeal sample from Lysobacter enzymogenes


Strain CX06

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS.ba

text: 20-25 cm

text: Keywords: GSC:MIxS;MIGS:6.0

text: unknow

text: potato rhizosphere

text: soil rhizosphere

text: soil

text: China:Harbin

text: LB medium

text: 45.86 N 126.81 E

text: one

text: Lysobacter enzymogenes

text: unpublished


PGHB

text: Northwest A&F University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: China: Yangling

text: Malus domestica

characteristic: host

text: Diplocarpon mali

text: cell culture

characteristic: sample type

text: PGHB

text: Diplocarpon mali isolated from apple Marssonina leaf blotch lesion


characteristic: External Id

text: Wageningen University & Research

text: live

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NVWA/RIVM

characteristic: collected by

text: Netherlands

characteristic: isolate

text: goat

characteristic: isolation source

text: 52.1326 N 5.2913 E

text: Escherichia coli

characteristic: serotype

text: STEC

text: Pathogen: environmental/food/other sample from Escherichia coli


text: Wageningen University & Research

characteristic: INSDC secondary accession

text: live

text: Pathogen.env

text: NVWA/RIVM

characteristic: collection date

text: Netherlands

text: sheep

text: 52.1326 N 5.2913 E

text: Escherichia coli

characteristic: organism

text: STEC

characteristic: strain

characteristic: title


text: Wageningen University & Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

text: RIVM

text: Netherlands

characteristic: geo loc name

text: human

text: 52.1326 N 5.2913 E

characteristic: lat lon

text: Escherichia coli

text: STEC


characteristic: External Id

text: Institute of Evolutionary Biology (CSIC- Universitat Pompeu Fabra)

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

text: N6 day2

characteristic: age

text: last nymphal stage

characteristic: dev stage

text: Blattella germanica

text: Control biological replicate 1

characteristic: replicate

text: female

characteristic: sex

text: whole body

characteristic: tissue

text: dspstBlue +dsPolyh

characteristic: treatment


characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: NCBI submission package

characteristic: SRA accession

text: N6 day2

text: last nymphal stage

text: Blattella germanica

characteristic: organism

text: Control biological replicate 2

text: female

text: whole body

text: dspstBlue +dsPolyh


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

text: N6 day2

text: last nymphal stage

text: Blattella germanica

text: Control biological replicate 3

text: female

text: whole body

characteristic: title

text: dspstBlue +dsPolyh


characteristic: INSDC last update

text: live

text: Model organism or animal

text: N6 day2

text: last nymphal stage

text: Blattella germanica

text: Treated Biological replicate1

text: female

text: whole body

text: dsAGO2 +dsPolyh


characteristic: External Id

text: live

text: Model organism or animal

text: N6 day2

text: last nymphal stage

text: Blattella germanica

text: Treated Biological replicate2

text: female

text: whole body

text: dsAGO2 +dsPolyh


text: live

characteristic: INSDC status

text: Model organism or animal

text: N6 day2

text: last nymphal stage

text: Blattella germanica

text: Treated Biological replicate3

text: female

text: whole body

text: dsAGO2 +dsPolyh


Phyllostachys heterocycla

text: South China Botanical Garden

text: live

text: Plant

characteristic: NCBI submission model

text: not collected

text: not collected

characteristic: cultivar

text: not collected

text: perennial woody grasses

characteristic: ecotype

characteristic: geo loc name

characteristic: isolate

text: Phyllostachys heteroclada

text: not collected

text: shoot

text: Plant sample from Phyllostachys heteroclada


name: Triplophysa rosa whole genome sequencing

text: Southwest University

text: live

text: Model organism or animal

text: adult

text: Triplophysa rosa

text: female

characteristic: sex

text: muscle

characteristic: tissue

text: Model organism or animal sample from Triplophysa rosa


name: Triplophysa rosa whole genome sequencing Hi-C 2

text: Southwest University

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: adult

text: Triplophysa rosa

text: female

text: muscle

text: whole genome sequencing from Triplophysa rosa


name: Triplophysa rosa whole genome sequencing 270_1

text: Southwest University

text: live

text: Model organism or animal

characteristic: NCBI submission package

text: adult

text: Triplophysa rosa

text: female

text: muscle


name: Triplophysa rosa whole genome sequencing 270_2

text: Southwest University

text: live

text: Model organism or animal

characteristic: SRA accession

text: adult

text: Triplophysa rosa

text: female

text: muscle


name: Triplophysa rosa whole genome sequencing 500

text: Southwest University

text: live

text: Model organism or animal

text: adult

text: Triplophysa rosa

characteristic: organism

text: female

text: muscle


name: Triplophysa rosa whole genome sequencing 3k

text: Southwest University

characteristic: INSDC center name

text: live

text: Model organism or animal

text: adult

text: Triplophysa rosa

text: female

text: muscle


name: Triplophysa rosa whole genome sequencing 4k_1

text: Southwest University

characteristic: INSDC first public

text: live

text: Model organism or animal

text: adult

text: Triplophysa rosa

text: female

text: muscle


name: Triplophysa rosa whole genome sequencing 4k_2

text: Southwest University

text: live

text: Model organism or animal

text: adult

text: Triplophysa rosa

text: female

text: muscle

characteristic: title


name: Triplophysa rosa whole genome sequencing 8k

text: Southwest University

characteristic: INSDC last update

text: live

text: Model organism or animal

text: adult

text: Triplophysa rosa

text: female

text: muscle


name: Triplophysa rosa whole genome sequencing 10k_1

characteristic: External Id

text: Southwest University

text: live

text: Model organism or animal

text: adult

text: Triplophysa rosa

text: female

text: muscle


name: Triplophysa rosa whole genome sequencing 10k_2

text: Southwest University

text: live

characteristic: INSDC status

text: Model organism or animal

text: adult

text: Triplophysa rosa

text: female

text: muscle


name: Triplophysa rosa whole genome sequencing 15k

text: Southwest University

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: adult

text: Triplophysa rosa

text: female

text: muscle


name: Triplophysa rosa whole genome sequencing 17k

text: Southwest University

text: live

text: Model organism or animal

text: adult

text: Triplophysa rosa

text: female

text: muscle


name: Triplophysa rosa whole genome sequencing PacBio_1

text: Southwest University

text: live

text: Model organism or animal

text: adult

text: Triplophysa rosa

text: female

text: liver


name: Triplophysa rosa whole genome sequencing PacBio_2

text: Southwest University

text: live

text: Model organism or animal

text: adult

text: Triplophysa rosa

text: female

text: liver


text: Nord University

text: live

text: Model organism or animal

text: 50 days

characteristic: age

text: Saima-Nord University

characteristic: collected by

characteristic: collection date

text: Juvenile

characteristic: dev stage

text: laboratory

text: Danio rerio

text: Wild-type

characteristic: strain

text: intestine

text: control

characteristic: treatment


text: Nord University

text: live

text: Model organism or animal

text: 50 days

text: Saima-Nord University

text: Juvenile

text: laboratory

characteristic: ecotype

text: Danio rerio

text: Wild-type

text: intestine

characteristic: tissue

text: soybean


text: Nord University

text: live

text: Model organism or animal

characteristic: NCBI submission package

text: 50 days

text: Saima-Nord University

text: Juvenile

text: laboratory

text: Danio rerio

text: Wild-type

text: intestine

text: macrogard


name: Triplophysa rosa whole genome sequencing PacBio_3

text: Southwest University

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: SRA accession

text: adult

text: Triplophysa rosa

characteristic: organism

text: female

characteristic: sex

text: liver


Streptomyces sp. CA-256286

text: Technical University of Denmark

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: alternate id

text: Fundacion MEDINA

characteristic: biomaterial provider

text: Spain: Balearic Islands, Formentera, El Pilar de la Mola, Muddy soil from torrent

characteristic: geo loc name

text: Fundacion MEDINA

characteristic: identified by

text: muddy soil from torrent

characteristic: isolation source

characteristic: isolation temperature (oC)

text: Streptomyces sp. CA-256286

text: sediment

characteristic: sample type

text: Microbe sample from Streptomyces sp. CA-256286

characteristic: title


characteristic: External Id

text: MaIAGE, INRAE

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Flavobacterium psychrophilum

text: yes

characteristic: pool

text: Bacteria

text: OSU THCO2-90

characteristic: strain

text: Global RNA-seq


text: MaIAGE, INRAE

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Flavobacterium psychrophilum

characteristic: organism

text: yes

text: Bacteria

text: OSU THCO2-90

text: 5'-end RNA-seq


text: University of Colorado School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

characteristic: ethnicity

text: USA:Colorado

text: Homo sapiens

characteristic: host

characteristic: host age

characteristic: host body mass index

text: Stool

characteristic: host body product

text: Spondylarthritis

characteristic: host disease

text: male

characteristic: host sex

text: HLA-B27 positive

text: Swab of rectum

text: 39.742 N 104.842 W

characteristic: lat lon

text: TNF inhibitor use

text: human gut metagenome

text: axSpA


characteristic: External Id

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Hispanic or Latino

text: USA:Colorado

characteristic: geo loc name

text: Homo sapiens

text: Stool

text: Spondylarthritis

text: male

text: HLA-B27 positive

text: Swab of rectum

characteristic: isolation source

text: 39.742 N 104.842 W

text: TNF inhibitor use

text: human gut metagenome

text: axSpA

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

text: USA:Colorado

text: Homo sapiens

text: Stool

text: Spondylarthritis

text: male

text: HLA-B27 positive

text: Swab of rectum

text: 39.742 N 104.842 W

text: TNF inhibitor use

text: human gut metagenome

characteristic: organism

text: axSpA


text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Hispanic or Latino

characteristic: ethnicity

text: USA:Colorado

text: Homo sapiens

characteristic: host

characteristic: host age

text: Stool

characteristic: host body product

text: Spondylarthritis

characteristic: host disease

text: male

text: HLA-B27 positive

text: Swab of rectum

text: 39.742 N 104.842 W

text: human gut metagenome

text: axSpA


characteristic: External Id

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

text: USA:Colorado

text: Homo sapiens

characteristic: host body mass index

text: Stool

text: Spondylarthritis

text: male

characteristic: host sex

text: HLA-B27 positive

text: Swab of rectum

text: 39.742 N 104.842 W

characteristic: lat lon

text: TNF inhibitor use

text: human gut metagenome

text: axSpA


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

text: USA:Colorado

characteristic: geo loc name

text: Homo sapiens

text: Stool

text: Spondylarthritis

text: male

text: HLA-B27 positive

text: Swab of rectum

characteristic: isolation source

text: 39.742 N 104.842 W

text: human gut metagenome

text: axSpA

characteristic: title


text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

characteristic: ethnicity

text: USA:Colorado

text: Homo sapiens

characteristic: host

characteristic: host age

text: Stool

text: Spondylarthritis

text: female

text: HLA-B27 positive

text: Swab of rectum

text: 39.742 N 104.842 W

text: TNF inhibitor use

text: human gut metagenome

characteristic: organism

text: axSpA


characteristic: External Id

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

text: USA:Colorado

text: Homo sapiens

characteristic: host body mass index

text: Stool

characteristic: host body product

text: Spondylarthritis

characteristic: host disease

text: male

text: HLA-B27 Negative

text: Swab of rectum

text: 39.742 N 104.842 W

text: TNF inhibitor use

text: human gut metagenome

text: axSpA


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

text: USA:Colorado

characteristic: geo loc name

text: Homo sapiens

text: Stool

text: Spondylarthritis

text: female

characteristic: host sex

text: HLA-B27 positive

text: Swab of rectum

text: 39.742 N 104.842 W

characteristic: lat lon

text: TNF inhibitor use

text: human gut metagenome

text: axSpA


text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

characteristic: ethnicity

text: USA:Colorado

text: Homo sapiens

characteristic: host

text: Stool

text: Spondylarthritis

text: female

text: HLA-B27 Negative

text: Swab of rectum

characteristic: isolation source

text: 39.742 N 104.842 W

text: TNF inhibitor use

text: human gut metagenome

text: axSpA

characteristic: title


characteristic: External Id

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

text: USA:Colorado

text: Homo sapiens

characteristic: host age

characteristic: host body mass index

text: Stool

text: male

text: HLA-B27 Negative

text: Swab of rectum

text: 39.742 N 104.842 W

text: human gut metagenome

characteristic: organism

text: HC


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Hispanic or Latino

text: USA:Colorado

characteristic: geo loc name

text: Homo sapiens

text: Stool

characteristic: host body product

text: male

text: HLA-B27 positive

text: Swab of rectum

text: 39.742 N 104.842 W

text: human gut metagenome

text: HC


text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Hispanic or Latino

characteristic: ethnicity

text: USA:Colorado

text: Homo sapiens

text: Stool

text: male

characteristic: host sex

text: HLA-B27 Negative

text: Swab of rectum

text: 39.742 N 104.842 W

characteristic: lat lon

text: human gut metagenome

text: HC


characteristic: External Id

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

text: USA:Colorado

text: Homo sapiens

characteristic: host

text: Stool

text: female

text: Swab of rectum

characteristic: isolation source

text: 39.742 N 104.842 W

text: human gut metagenome

text: HC

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

text: USA:Colorado

text: Homo sapiens

characteristic: host age

characteristic: host body mass index

text: Stool

text: female

text: HLA-B27 positive

text: Swab of rectum

text: 39.742 N 104.842 W

text: human gut metagenome

characteristic: organism

text: HC


characteristic: INSDC last update

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

text: USA:Colorado

characteristic: geo loc name

text: Homo sapiens

text: Stool

characteristic: host body product

text: female

text: HLA-B27 Negative

text: Swab of rectum

text: 39.742 N 104.842 W

text: human gut metagenome

text: HC


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

characteristic: ethnicity

text: USA:Colorado

text: Homo sapiens

text: Stool

text: Spondylarthritis, Crohn's Disease

characteristic: host disease

text: male

characteristic: host sex

text: HLA-B27 positive

text: Swab of rectum

text: 39.742 N 104.842 W

characteristic: lat lon

text: TNF inhibitor use

text: human gut metagenome

text: CD-axSpA


characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

text: USA:Colorado

text: Homo sapiens

characteristic: host

text: Stool

text: Spondylarthritis, Crohn's Disease

text: male

text: HLA-B27 positive

text: Swab of rectum

characteristic: isolation source

text: 39.742 N 104.842 W

text: TNF inhibitor use

text: human gut metagenome

text: CD-axSpA

characteristic: title


characteristic: INSDC last update

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: Keywords: GSC:MIxS;MIMS:6.0

text: human gut

text: colonoscopy suite

text: gut biopsy

text: Not Hispanic or Latino

text: USA:Colorado

text: Homo sapiens

characteristic: host age

characteristic: host body mass index

text: Stool

text: Spondylarthritis, Crohn's Disease

text: male

text: HLA-B27 Negative

text: Swab of rectum

text: 39.742 N 104.842 W

text: TNF inhibitor use

text: human gut metagenome

characteristic: organism

text: CD-axSpA


characteristic: External Id

characteristic: INSDC secondary accession

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.human-gut

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: human gut

text: colonoscopy suite

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text: Not Hispanic or Latino

characteristic: ethnicity

text: USA:Colorado

characteristic: geo loc name

text: Homo sapiens

text: Stool

characteristic: host body product

text: Spondylarthritis, Crohn's Disease

characteristic: host disease

text: female

text: HLA-B27 positive

text: Swab of rectum

text: 39.742 N 104.842 W

text: TNF inhibitor use

text: human gut metagenome

text: CD-axSpA


characteristic: INSDC center name

characteristic: INSDC first public

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characteristic: INSDC status

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characteristic: NCBI submission model

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characteristic: host

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text: Spondylarthritis, Crohn's Disease

text: female

characteristic: host sex

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characteristic: lat lon

text: Ustekinumab use

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characteristic: INSDC last update

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text: TNF inhibitor use

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characteristic: title


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text: TNF inhibitor use

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characteristic: lat lon

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text: Crohn's Disease

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text: HLA-B27 positive

text: Swab of rectum

text: 39.742 N 104.842 W

text: TNF inhibitor use

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characteristic: organism

text: CD


text: Ying Yu, Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences

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text: live

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text: Generic

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text: ECM (Sciencell, SC-1001)

characteristic: culture medium

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characteristic: source

text: human retinal microvascular endothelial cells

text: 500nM Prostaglandin F2alpha (Cayman, 16010) for 6 hours

characteristic: treatment


characteristic: INSDC last update

text: live

text: Generic

characteristic: NCBI submission package

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text: ECM (Sciencell, SC-1001)

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text: 0.1percent DMSO for 6 hours


characteristic: External Id

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characteristic: cell line

text: Sample

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text: male

characteristic: sex

text: Lung, derived from metastatic site: lymph node

characteristic: tissue

characteristic: title


text: CRUK-MI

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text: male

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text: Children's National Hospital

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text: Children's National Hospital

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text: Children's National Hospital

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text: Oregon Health & Science University

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text: PBMC,Bone marrow

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text: Cells were maintained over the duration of the experiment within mice until ex vivo sampling occurred. Immediately after collection, cecal samples were subjected to flash-freezing and stored at -80C until total community DNA extractions could be performed. Microbial DNA was extracted using a MagAttract HMW DNA Kit (Qiagen, Hilden, Germany). The 16S rRNA V4 region was amplified and sequenced on Illumina Iseq 100 platform following the manufacturer’s instructions. Raw 16S amplicon sequence (forward reads only) and metadata were demultiplexed using the split_libraries_fastq.py script implemented in QIIME1.9.1. The demultiplexed fastq file was split into sample-specific fastq files using split_sequence_file_on_sample_ids.py script from Qiime1.9.1. Individual fastq files without nonbiological nucleotides were processed using Divisive Amplicon Denoising Algorithm pipeline. The output of the dada2 pipeline (feature table of amplicon sequence variants) was processed for alpha and beta diversity analysis using phyloseq and microbiomeSeq (http://www.github.com/umerijaz/microbiomeSeq) packages in R. Alpha diversity estimates were analysed within group categories using estimate_richness function of the phyloseq package. Nonmultidimensional scaling (NMDS) was performed using Bray-Curtis dissimilarity matrix between groups and visualized by using ggplot2 package. We assessed the statistical significance (P<0.05) throughout and whenever necessary adjusted P values for multiple comparisons according to the Benjamini and Hochberg method to control False Discovery Rate, while performing multiple testing on taxa abundance according to sample categories. We performed an ANOVA among sample categories while measuring α-diversity using the plot_anova_diversity function in microbiomeSeq package (http://www.github.com/umerijaz/microbiomeSeq). Permutational multivariate ANOVA with 999 permutations was performed to test the statistical significance of the non-multidimensional scaling patterns with the ordination function of the microbiomeSeq package. Linear regression was performed on taxa abundances against metadata variables using “lm” function implemented in dplyr package in R.

text: fastq

characteristic: Filename 1

characteristic: Filename 2

text: Cleveland Clinic

characteristic: INSDC secondary accession

text: live

text: PCR

text: Metagenomic

text: Amplicon

text: Paired

text: Model organism or animal

text: 14 wks

characteristic: age

characteristic: biological replicate

text: Conventional

text: iSeq 100

characteristic: instrument model

characteristic: library id

text: Mus musculus

text: Illumina

characteristic: platform

text: female

characteristic: strain

text: Cecum

text: Model organism or animal sample from Mus musculus

text: minimal choline diet 10d

characteristic: treatment


characteristic: External Id

text: fastq

text: Cleveland Clinic

characteristic: INSDC center name

text: live

text: PCR

text: Metagenomic

text: Amplicon

text: Paired

text: Model organism or animal

characteristic: NCBI submission package

characteristic: SRA accession

text: 14 wks

text: Conventional

text: iSeq 100

text: Mus musculus

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text: female

characteristic: sex

text: Cecum

characteristic: title

text: 1% choline diet 10d


101 MW

text: fastq

text: Cleveland Clinic

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: PCR

text: Metagenomic

text: Amplicon

text: Paired

text: Model organism or animal

characteristic: NCBI submission model

text: 22 wks

text: Conventional

text: iSeq 100

text: Mus musculus

characteristic: organism

text: Illumina

text: female

text: Cecum

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text: 1% choline diet 10d


102 MW

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text: Cleveland Clinic

characteristic: INSDC secondary accession

text: live

text: PCR

text: Metagenomic

text: Amplicon

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text: Model organism or animal

text: 22 wks

characteristic: age

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text: Conventional

text: iSeq 100

characteristic: instrument model

text: Mus musculus

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103 MW

characteristic: External Id

text: fastq

text: Cleveland Clinic

characteristic: INSDC center name

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text: PCR

text: Metagenomic

text: Amplicon

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text: Model organism or animal

text: 22 wks

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text: iSeq 100

characteristic: library id

text: Mus musculus

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characteristic: platform

text: female

characteristic: strain

text: Cecum

text: 1% choline diet 10d

characteristic: treatment