Stagonosporopsis rhizophilae

text: Chinese Academy of Forestry

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China: Xindeng, Zhejiang

text: Populus deltoides

characteristic: host

text: Stagonosporopsis rhizophila

text: whole organism

characteristic: sample type

characteristic: strain

text: Microbe sample from Stagonosporopsis rhizophila


status: PUBLIC

characteristic: External Id

text: The Chinese University of Hong Kong

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

text: Hong Kong

characteristic: geo loc name

characteristic: isolate

text: Holotrichia diomphalia

characteristic: organism

text: Whole body

characteristic: tissue

text: Invertebrate sample from Holotrichia diomphalia

characteristic: title


text: Army Medical University

text: live

text: Model organism or animal

text: 6-8 weeks

characteristic: age

text: Mus musculus

text: female

characteristic: sex

text: bone marrow

text: Model organism or animal sample from Mus musculus

text: non-irradiation sample 1

characteristic: treatment


characteristic: External Id

text: Army Medical University

text: live

text: Model organism or animal

text: 6-8 weeks

text: Mus musculus

text: female

characteristic: strain

text: bone marrow

text: non-irradiation sample 2


text: Army Medical University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

text: 6-8 weeks

text: Mus musculus

text: female

text: bone marrow

text: non-irradiation sample 3


text: Army Medical University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: 6-8 weeks

text: Mus musculus

text: female

text: bone marrow

text: 3 days after irradiation sample 1


text: Army Medical University

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

text: 6-8 weeks

text: Mus musculus

text: female

text: bone marrow

text: 3 days after irradiation sample 2


text: Army Medical University

text: live

text: Model organism or animal

characteristic: NCBI submission package

characteristic: SRA accession

text: 6-8 weeks

text: Mus musculus

text: female

text: bone marrow

text: 3 days after irradiation sample 3


text: Army Medical University

text: live

text: Model organism or animal

text: 6-8 weeks

text: Mus musculus

text: female

text: bone marrow

text: 7 days after irradiation sample 1


text: Army Medical University

text: live

text: Model organism or animal

text: 6-8 weeks

text: Mus musculus

text: female

text: bone marrow

text: 7 days after irradiation sample 2


text: Army Medical University

text: live

text: Model organism or animal

text: 6-8 weeks

text: Mus musculus

text: female

text: bone marrow

text: 7 days after irradiation sample 3


CSBF

text: University of Technology Sydney

text: live

text: Microbe, viral or environmental

text: 1 of 4

characteristic: aliquot

text: Pasteur Institute of Iran the production and research complex

characteristic: biomaterial provider

text: School of Public Health, Tehran University of Medical Sciences

characteristic: collected by

characteristic: collection date

text: Iran: Tehran

characteristic: geo loc name

text: Vaccine strain

characteristic: isolation source

text: Bacterial culture

characteristic: sample type

text: Pasteur 1173P2

text: Microbe sample from Mycobacterium tuberculosis variant bovis BCG


CMBF

characteristic: External Id

text: University of Technology Sydney

text: live

text: Microbe, viral or environmental

text: Iran: Tehran

text: Vaccine strain

text: Mycobacterium tuberculosis variant bovis BCG

characteristic: organism

text: Bacterial culture

text: Pasteur 1173P2

characteristic: title


text: University of Technology Sydney

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: 1 of 1

text: Iran: Tehran

text: Vaccine strain

text: Bacterial culture

text: Pasteur 1173P2

characteristic: strain


Danish 1331

text: University of Technology Sydney

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Iran: Tehran

text: Vaccine strain

text: Bacterial culture

text: Danish 1331


text: Heilongjiang University

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: China:Nenjiang

text: FAO classification

characteristic: host

text: 48.18 N 126.22 E

characteristic: lat lon

text: soil metagenome

text: fungi


text: China Pharmaceutical University

text: live

text: Human

text: 69 years adult

characteristic: age

text: American type culture collection (ATCC)

characteristic: biomaterial provider

characteristic: cell line

text: epithelial

characteristic: cell type

text: The MCF7 wild-type cell line

characteristic: description

text: adenocarcinoma

characteristic: disease

text: Caucasian

characteristic: ethnicity

text: CM McGrath deposited this cell line (MCF7, ATCC HTB-22) in American type culture collection (ATCC) .

characteristic: isolate

text: Homo sapiens

text: biological replicate 1

characteristic: replicate

text: female

characteristic: sex

text: mammary gland, breast; derived from metastatic site: pleural effusion

characteristic: tissue

text: Human sample from Homo sapiens

text: No treating.

characteristic: treatment


MA

characteristic: External Id

text: China Pharmaceutical University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Human

characteristic: NCBI submission model

text: 69 years adult

text: American type culture collection (ATCC)

text: epithelial

text: Doxorubicin-resistant cell lines screened based on the MCF7 wild-type cell lines.

text: adenocarcinoma

text: Caucasian

text: Homo sapiens

characteristic: organism

text: biological replicate 2

text: female

text: Human sample from Homo sapiens

characteristic: title

text: No treating.


MAK

text: China Pharmaceutical University

text: live

text: Human

characteristic: NCBI submission package

characteristic: SRA accession

text: 69 years adult

characteristic: age

text: American type culture collection (ATCC)

characteristic: biomaterial provider

characteristic: cell line

text: epithelial

characteristic: cell type

characteristic: description

text: adenocarcinoma

text: Caucasian

text: Homo sapiens

text: biological replicate 3

text: female

text: Human sample from Homo sapiens

text: Cells were treated with PAK.


text: University of Constance

text: live

text: MIMS.me

text: 0.1000 µM

characteristic: ammonium

characteristic: collection date

text: 85 m

characteristic: depth

text: Illumina sequencing

text: 405 m

characteristic: elev

text: freshwater

text: freshwater biome

text: freshwater

text: Germany: Lake Constance

characteristic: geo loc name

text: 47.75788 N 9.12617 E

characteristic: lat lon

text: 99.9522 µM

characteristic: nitrate

text: freshwater metagenome

characteristic: ph

text: 2.6 µg/L

characteristic: phosphate

characteristic: temp

text: MIMS Environmental/Metagenome sample from freshwater metagenome

type: derived-from


characteristic: External Id

text: University of Constance

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 0.1214 µM

text: 85 m

text: Illumina sequencing

text: 405 m

text: freshwater

text: freshwater biome

text: freshwater

text: Germany: Lake Constance

text: 47.75788 N 9.12617 E

text: 121.3705 µM

text: freshwater metagenome

characteristic: organism

text: 3.4 µg/L

characteristic: title


text: University of Constance

text: live

text: MIMS.me

characteristic: SRA accession

text: 0.0601 µM

characteristic: ammonium

characteristic: collection date

text: 85 m

characteristic: depth

text: Illumina sequencing

characteristic: description

text: 405 m

characteristic: elev

text: freshwater

text: freshwater biome

text: freshwater

text: Germany: Lake Constance

text: 47.75788 N 9.12617 E

text: 60.0810 µM

text: freshwater metagenome

text: 3.2 µg/L


text: CHUNG-ANG UNIVERSITY

text: live

text: Microbe, viral or environmental

text: South Korea

characteristic: geo loc name

text: sea water

characteristic: isolation source

text: Rheinheimera maricola

text: water

characteristic: sample type

characteristic: strain

text: Microbe sample from Rheinheimera maricola

text: type strain of Rheinheimera maricola

characteristic: type-material


Ctrl

characteristic: External Id

text: China Pharmaceutical University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Human

text: 51 years adult

characteristic: age

text: American type culture collection(ATCC)

characteristic: biomaterial provider

characteristic: cell line

text: epithelial

characteristic: cell type

text: adenocarcinoma

characteristic: disease

text: Caucasian

characteristic: ethnicity

text: R Cailleau deposited this cell line (MDA-MB-231, ATCC HTB-26) in American type culture collection(ATCC)

characteristic: isolate

text: Homo sapiens

text: female

characteristic: sex

text: mammary gland/breast; derived from metastatic site: pleural effusion

characteristic: tissue

text: Human sample from Homo sapiens

text: PBS for 8 h

characteristic: treatment


KLA

text: China Pharmaceutical University

text: live

characteristic: INSDC status

text: Human

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 51 years adult

text: American type culture collection(ATCC)

text: epithelial

text: adenocarcinoma

text: Caucasian

text: Homo sapiens

characteristic: organism

text: female

text: Human sample from Homo sapiens

characteristic: title

text: 5 M protein PAK for 8 h


characteristic: External Id

text: CHU Dupuytren

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: CHU Limoges

characteristic: collected by

characteristic: collection date

text: France: Limoges

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: covid infection

characteristic: host disease

text: mono

text: nasopharynx sample

characteristic: isolation source

text: 45.812528 N 1.235646 E

characteristic: lat lon

characteristic: strain

text: Pathogen: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2


text: CHU Dupuytren

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: CHU Limoges

text: France: Limoges

text: Homo sapiens

text: covid infection

text: basa

characteristic: isolate

text: nasopharynx sample

text: 45.812528 N 1.235646 E

text: Severe acute respiratory syndrome coronavirus 2


characteristic: External Id

text: CHU Dupuytren

text: live

text: Pathogen.cl

characteristic: SRA accession

text: CHU Limoges

text: France: Limoges

text: Homo sapiens

text: covid infection

text: mono

text: nasopharynx sample

text: 45.812528 N 1.235646 E

characteristic: organism

characteristic: title


text: CHU Dupuytren

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: CNR-CMV

text: France: Limoges

text: Homo sapiens

text: HCMV congenital infection

text: S5-128 mid20

text: new born child urine

text: 45.812528 N 1.235646 E

text: Human betaherpesvirus 5

text: Pathogen: clinical or host-associated sample from Human betaherpesvirus 5


text: CHU Dupuytren

text: live

text: Pathogen.cl

text: CNR-CMV

characteristic: collected by

characteristic: collection date

text: France: Limoges

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: HCMV congenital infection

text: Proton-235 mid78

text: saliva

text: 45.812528 N 1.235646 E

text: Human betaherpesvirus 5


text: Yonsei University Medical College

text: live

text: Model organism or animal

text: 7 weeks

characteristic: age

text: HY Gee lab Department of Pharmacology Yonsei University College of Medicine Avison BioMedical Research Center #226 50-1 Yonsei-ro Seoul 03722 Korea

characteristic: biomaterial provider

text: Inbreed

characteristic: breed

text: Yonsei University

text: Adult

characteristic: dev stage

text: hearing loss

characteristic: disease

text: moderate

text: Kcnq4 W276S

characteristic: genotype

text: Mus musculus

text: hearing loss

characteristic: phenotype

text: cochlea DNA

characteristic: sample type

text: male

characteristic: sex

characteristic: strain

text: Cochlea

characteristic: tissue

text: AAV

characteristic: treatment


characteristic: External Id

text: Yonsei University Medical College

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 7 weeks

text: Inbreed

text: Yonsei University

text: Adult

text: hearing loss

text: moderate

text: Kcnq4 W276S

characteristic: isolate

text: Mus musculus

characteristic: organism

text: hearing loss

text: cochlea DNA

text: male

text: Cochlea

characteristic: title

text: No


text: Yonsei University Medical College

text: live

text: Model organism or animal

text: 7 weeks

characteristic: age

characteristic: biomaterial provider

text: Inbreed

characteristic: breed

text: Yonsei University

characteristic: collected by

text: Adult

characteristic: dev stage

text: hearing loss

characteristic: disease

text: moderate

text: Kcnq4 W276S

characteristic: genotype

text: Mus musculus

text: hearing loss

characteristic: phenotype

text: cochlea DNA

characteristic: sample type

text: male

text: Cochlea

text: RNP


characteristic: External Id

text: Yonsei University Medical College

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Model organism or animal

text: 7 weeks

text: Inbreed

text: Yonsei University

text: Adult

text: hearing loss

text: moderate

text: Kcnq4 W276S

text: Mus musculus

text: hearing loss

text: cochlea DNA

text: male

characteristic: sex

characteristic: strain

text: Cochlea

characteristic: tissue

text: RNP

characteristic: treatment


text: Coral Reef Research Center of China, Guangxi University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: coral

characteristic: host

text: coral sample

characteristic: isolation source

text: coral metagenome

characteristic: organism

text: Associated bacteria in coral Pocillopora damicornis

characteristic: title

characteristic: tmp


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: coral

text: coral sample

text: coral metagenome

text: Associated dinoflagellates in coral Pocillopora damicornis


Thermoanaerobacterium sp. R66

text: Mahidol University

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: Thailand: Nan

characteristic: geo loc name

text: forest soil

text: Thermoanaerobacterium sp. R66

text: Cell culture

characteristic: sample type

characteristic: strain

text: Microbe sample from Thermoanaerobacterium sp. R66


text: Lanzhou University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: soil

text: soil metagenome


text: Institute of Zoology, Guangdong Academy of Sciences

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: adult

characteristic: age

text: adult

characteristic: dev stage

text: Sus scrofa

text: Central lung

characteristic: tissue

text: Model organism or animal sample from Sus scrofa

characteristic: treatment


text: live

text: Model organism or animal

characteristic: SRA accession

text: adult

text: adult

text: Sus scrofa

characteristic: organism

text: Lung

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: live

text: Model organism or animal

text: adult

text: adult

text: Sus scrofa

text: Mixture of anal and pharyngeal swabs


text: LNCC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIMS.me

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: Brazil

text: Homo sapiens

characteristic: host

characteristic: id

text: 3.7737 S 38.5748 W

text: metagenome


text: LNCC

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS/MIMS/MIMARKS.human-associated

text: MIMS.me

text: Keywords: GSC:MIxS;MIMS:6.0

text: Brazil

text: Homo sapiens

text: 22.9527 S 46.54418 W

text: metagenome


text: Heilongjiang University

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: collection date

text: China:Nenjiang

characteristic: geo loc name

text: FAO classification

characteristic: isolation source

text: 48.18 N 126.22 E

characteristic: lat lon

text: soil metagenome

text: bacteria


text: Allwegene Technology Inc.

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: China:Beijing

text: Homo sapiens

text: feces

text: 40 N 116 E

text: metagenome

characteristic: organism

text: Metagenome or environmental sample from metagenome


characteristic: External Id

text: Kyonggi university

text: live

text: Metagenome or environmental

text: soil

text: not collected

text: soil metagenome

characteristic: sample number

text: Metagenome or environmental sample from soil metagenome

characteristic: title


characteristic: ID

text: LNCC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: Keywords: GSC:MIxS;MIMS:6.0

text: Brazil

text: Bos taurus

text: 3.7737 S 38.5748 W

text: metagenome


text: LNCC

characteristic: INSDC secondary accession

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: Brazil

text: Sus scrofa

characteristic: host

text: 3.7737 S 38.5748 W

text: metagenome


text: LNCC

text: live

characteristic: INSDC status

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMS:6.0

text: Brazil

text: Gallus gallus

text: 3.7737 S 38.5748 W

text: metagenome


Vibrio sp. SCSIO 43133

text: South China Sea Institute of Oceanology,Chinese Academy of Sciences

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.host-associated

text: Keywords: GSC:MIxS;MIGS:6.0

text: China: Hainan Island

text: Galaxea fascicularis

text: 18.24 N 109.36 E

text: Vibrio sp. SCSIO 43133

text: SCSIO 43133

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Vibrio sp. SCSIO 43133


text: State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences

text: live

text: Generic

text: mycelium

characteristic: development stage

text: Heilongjiang province, China

characteristic: locality

text: Stropharia rugosoannulata

text: Fungi

text: Heinong No.1

text: S68 Sample3 [S3]


text: live

text: Generic

characteristic: SRA accession

text: mycelium

text: Heilongjiang province, China

text: Stropharia rugosoannulata

characteristic: organism

text: Fungi

text: Heinong No.1

text: S68 Sample2 [S2]


characteristic: External Id

text: live

text: Generic

text: mycelium

text: Heilongjiang province, China

text: Stropharia rugosoannulata

text: Fungi

text: Heinong No.1

text: S68 Sample1 [S1]


text: University of Wisconsin-Madison

text: live

text: Metagenome or environmental

characteristic: collection date

text: USA: Wisconsin

characteristic: geo loc name

text: Atta colombica

text: cellulose-enriched refuse dump

characteristic: isolation source

text: 43.07 N 89.40 W

characteristic: lat lon

text: metagenome

text: aerobe

characteristic: title


text: Florida State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIMAG.plant-associated

text: 0-2 cm

characteristic: depth

text: Keywords: GSC:MIxS;MIMAG:6.0

text: coastal wetland

text: salt marsh

text: sediment

characteristic: environmental sample

text: USA: Alabama

text: Sporobolus alterniflorus

characteristic: isolate

text: rhizosphere (0-2cm) of the salt marsh grasses

text: 30.26194444 N 88.23833333 W

text: rhizosphere metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Planctomycetota bacterium

text: 1 g

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome Planctomycetes_bin_134 sampled from the Spartina alterniflora rhizosphere


text: Kuhn Lab, BIOmac Research Center, NW1, University of Bayreuth

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: NELF-E (Abcam; ab170104)

characteristic: antibody

text: Cortical neurons

characteristic: cell type

characteristic: developmental stage

text: Mus musculus

text: Cortical neurons

characteristic: strain

text: TTX/ KCl

characteristic: treatment


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: NELF-E (Abcam; ab170104)

text: Cortical neurons

text: Mus musculus

characteristic: organism

text: Cortical neurons

characteristic: title

text: TTX


text: live

text: Generic

text: Cortical neurons

text: Mus musculus

text: Cortical neurons

text: TTX


text: live

text: Generic

text: NELF-A (Santa Cruz Biotech; sc-23599)

text: Cortical neurons

text: Mus musculus

text: Cortical neurons

text: TTX/ KCl


text: live

text: Generic

text: NELF-A (Santa Cruz Biotech; sc-23599)

text: Cortical neurons

text: Mus musculus

text: Cortical neurons

text: TTX


text: live

text: Generic

text: Cortical neurons

text: Mus musculus

text: Cortical neurons

text: TTX/ KCl


text: live

text: Generic

text: Cortical neurons

text: Mus musculus

text: Cortical neurons

text: eClip_K30_UV_N_E_SDS 1%

text: TTX/ KCl


text: live

text: Generic

text: Cortical neurons

text: Mus musculus

text: Cortical neurons

text: eClip_K10_UV_N_E_SDS 1%

text: TTX/ KCl


text: live

text: Generic

text: Cortical neurons

text: Mus musculus

text: Cortical neurons

text: eClip_Un_UV_N_E_SDS 1%

text: TTX


text: live

text: Generic

text: Pol II (N-20) (Santa Cruz Biotech; sc-899X)

text: Cortical neurons

text: Mus musculus

text: Cortical neurons

text: TTX/ KCl


text: live

text: Generic

text: Cortical neurons

text: Mus musculus

text: Cortical neurons

text: TTX


characteristic: ID

text: National Laboratory of Scientific Computation

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIMS.me

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: Brazil

text: Homo sapiens

characteristic: host

text: 22.2218 S 54.8064 W

text: metagenome


text: chicken

characteristic: IFSAC+ Category

text: FDA Center for Food Safety and Applied Nutrition

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: LexMapr Version

text: Pathogen.env

characteristic: NCBI submission model

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: Contra Costa Public Health Laboratory

characteristic: collected by

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:CA

characteristic: geo loc name

text: chicken wing

characteristic: isolation source

text: chicken wing:FOODON_00002674

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: Contra Costa Public Health Laboratory

characteristic: sequenced by

text: food

characteristic: source type

text: enterica

characteristic: species

text: Pathogen: environmental/food/other sample from Salmonella enterica


characteristic: External Id

text: pork

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Pathogen.env

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: Contra Costa Public Health Laboratory

text: Salmonella

text: USA:CA

text: pork chop

text: pork chop food product:FOODON_00001049

text: Salmonella enterica

characteristic: organism

text: GenomeTrakr

text: Contra Costa Public Health Laboratory

text: food

text: enterica

characteristic: strain

characteristic: title


text: turkey

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: LexMapr Version

text: Pathogen.env

characteristic: NCBI submission model

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: Contra Costa Public Health Laboratory

characteristic: collected by

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:CA

characteristic: geo loc name

text: ground turkey

text: turkey (ground or minced):FOODON_00002714

text: Salmonella enterica

text: GenomeTrakr

text: Contra Costa Public Health Laboratory

text: food

text: enterica


characteristic: External Id

text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

text: environmental/food/other

text: Contra Costa Public Health Laboratory

text: Salmonella

text: USA:CA

text: chicken thigh

characteristic: isolation source

text: chicken thigh:GENEPIO_0002752

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: Contra Costa Public Health Laboratory

characteristic: sequenced by

text: food

characteristic: source type

text: enterica

characteristic: species


text: chicken

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

characteristic: LexMapr Version

text: Pathogen.env

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: environmental/food/other

text: Contra Costa Public Health Laboratory

text: Campylobacter

text: USA:CA

text: chicken wing

text: chicken wing:FOODON_00002674

text: Campylobacter jejuni

characteristic: organism

text: GenomeTrakr

text: Contra Costa Public Health Laboratory

text: food

text: jejuni

characteristic: strain

text: Pathogen: environmental/food/other sample from Campylobacter jejuni

characteristic: title


characteristic: External Id

text: chicken

characteristic: IFSAC+ Category

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Pathogen.env

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: Contra Costa Public Health Laboratory

characteristic: collected by

characteristic: collection date

text: Campylobacter

characteristic: genus

text: USA:CA

characteristic: geo loc name

text: chicken thigh

text: chicken thigh:GENEPIO_0002752

text: Campylobacter jejuni

text: GenomeTrakr

text: Contra Costa Public Health Laboratory

text: food

text: jejuni


text: Jinfang Zhang Lab, Medical Research Institute, Wuhan University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: cell line

text: Colon cancer cells

characteristic: cell type

text: Usp8 KO

characteristic: genotype

text: Mus musculus

text: Colon

text: BALB/c

text: Colon

characteristic: tissue

text: CT26 Usp8 KO-3


characteristic: External Id

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Colon cancer cells

text: Usp8 KO

text: Mus musculus

characteristic: organism

text: Colon

text: BALB/c

characteristic: strain

text: Colon

text: CT26 Usp8 KO-2

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Colon cancer cells

text: Usp8 KO

text: Mus musculus

text: Colon

text: BALB/c

text: Colon

text: CT26 Usp8 KO-1


text: live

text: Generic

text: Colon cancer cells

text: Usp8 WT

text: Mus musculus

text: Colon

text: BALB/c

text: Colon

text: CT26 Usp8 WT-3


text: live

text: Generic

text: Colon cancer cells

text: Usp8 WT

text: Mus musculus

text: Colon

text: BALB/c

text: Colon

text: CT26 Usp8 WT-2


text: live

text: Generic

text: Colon cancer cells

text: Usp8 WT

text: Mus musculus

text: Colon

text: BALB/c

text: Colon

text: CT26 Usp8 WT-1


text: chicken

characteristic: IFSAC+ Category

text: live

characteristic: LexMapr Version

text: Pathogen.env

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: Contra Costa Public Health Laboratory

characteristic: collected by

characteristic: collection date

text: Salmonella

characteristic: genus

text: USA:CA

characteristic: geo loc name

text: chicken breast

characteristic: isolation source

text: chicken breast:FOODON_00002703

characteristic: ontological term

text: Salmonella enterica

text: GenomeTrakr

characteristic: project name

text: Contra Costa Public Health Laboratory

characteristic: sequenced by

text: food

characteristic: source type

text: enterica

characteristic: species


characteristic: External Id

text: University of Southern California

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: MAFB-P2A-eGFP H9 hESC

characteristic: cell line

text: Homo sapiens

characteristic: organism

text: kidney organoids derived from human embryonic stem cells

text: differentiation day 28

characteristic: time

text: Miniature kidney organoids

characteristic: tissue

text: Miniature kidney organoids collected at differentiation day 28

characteristic: title


text: University of Southern California

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: MAFB-P2A-eGFP H9 hESC

text: Homo sapiens

text: differentiation day 16

text: Miniature kidney organoids

text: Miniature kidney organoids collected at differentiation day 16


text: University of Southern California

text: live

text: Generic

text: MAFB-P2A-eGFP H9 hESC

text: Homo sapiens

text: differentiation day 14

text: Miniature kidney organoids

text: Miniature kidney organoids collected at differentiation day 14


text: University of Southern California

text: live

text: Generic

text: MAFB-P2A-eGFP H9 hESC

text: Homo sapiens

text: differentiation day 10

text: Miniature kidney organoids

text: Miniature kidney organoids collected at differentiation day 10


text: University of Southern California

text: live

text: Generic

text: MAFB-P2A-eGFP H9 hESC

text: Homo sapiens

text: differentiation day 8

text: Miniature kidney organoids

text: Miniature kidney organoids collected at differentiation day 8


text: chicken

characteristic: IFSAC+ Category

text: live

characteristic: LexMapr Version

text: Pathogen.env

characteristic: ProjectAccession

characteristic: PublicAccession

text: environmental/food/other

text: Contra Costa Public Health Laboratory

characteristic: collected by

characteristic: collection date

text: Campylobacter

characteristic: genus

text: USA:CA

characteristic: geo loc name

text: chicken breast

characteristic: isolation source

text: chicken breast:FOODON_00002703

characteristic: ontological term

text: Campylobacter coli

text: GenomeTrakr

characteristic: project name

text: Contra Costa Public Health Laboratory

characteristic: sequenced by

text: food

text: coli

characteristic: strain

text: Pathogen: environmental/food/other sample from Campylobacter coli


characteristic: External Id

text: Oregon Health & Science University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Indian-origin

characteristic: breed

characteristic: cell type

characteristic: datasetId

text: Adult

characteristic: dev stage

text: Macaca mulatta

characteristic: organism

text: Model organism or animal sample from Macaca mulatta


text: Oregon Health & Science University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

text: Indian-origin

text: Bulk CD8s

text: Adult

text: Macaca mulatta

characteristic: title


text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

text: Naive CD8

text: Adult

text: Macaca mulatta


text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

text: Eff Mem

text: Adult

text: Macaca mulatta


text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

text: Central Mem CD8

text: Adult

text: Macaca mulatta


text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

text: Naive CD4

text: Adult

text: Macaca mulatta


text: King Faisal University

text: live

text: Pathogen.cl

text: Haitham Elbir

text: Saudi Arabia: Hofuf

text: camel

characteristic: host

text: Pyometra

text: uterus

text: 25.22 N 49.36 E

text: Corynebacterium cystitidis

text: Pathogen: clinical or host-associated sample from Corynebacterium cystitidis


text: Universite de Poitiers ecologie et Biologie des Interactions, UMR CNRS 7267

text: live

text: Microbe, viral or environmental

text: Pr Bouchon DIDIER, Poitiers Univesity

text: Jessica DITTMER

text: France: Poitiers

text: Armadillidium vulgare

text: hepatopancreas

text: Candidatus Hepatincola sp. Av

text: whole organism

text: Av

characteristic: strain

text: Microbe sample from Candidatus Hepatincola sp. Av


characteristic: External Id

text: Jawaharlal Nehru University

text: live

text: MIMS.me

characteristic: collection date

characteristic: depth

text: The soil samples were collected from three different elevation range in the temperate forest of the western Himalayan ecosystem. Metagenomic sequencing was performed to evaluate the relationship between microbial diversity and plant functional traits with change in elevation.

characteristic: description

characteristic: elev

text: Himalayan ecosystem

text: Himachal Pradesh

text: Soil

text: India: Himachal Pradesh

characteristic: geo loc name

text: soil

characteristic: isolation source

text: 30.51 N 77.21 E

characteristic: lat lon

text: soil metagenome

text: MIMS Environmental/Metagenome sample from Metagenomic Sequencing of Himalayan soil sample_1500


text: Oregon Health & Science University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Indian-origin

characteristic: breed

text: Bulk BAL

characteristic: cell type

text: Adult

text: Macaca mulatta


text: Oregon Health & Science University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Model organism or animal

text: Indian-origin

text: PBMC,BM

characteristic: datasetId

text: Adult

characteristic: dev stage

text: Macaca mulatta

characteristic: organism

text: male

characteristic: sex

text: PBMC,BM

characteristic: tissue

characteristic: title


characteristic: External Id

text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

text: Spleen,Liver

text: Adult

text: Macaca mulatta

text: male

text: Spleen,Liver


text: Oregon Health & Science University

characteristic: INSDC last update

text: live

text: Model organism or animal

text: Indian-origin

text: pLN,mesLN

text: Adult

text: Macaca mulatta

text: male

text: pLN,mesLN


text: Oregon Health & Science University

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: Indian-origin

text: PBMC,BM

text: Adult

text: Macaca mulatta

text: female

text: PBMC,BM


text: Oregon Health & Science University

text: live

characteristic: INSDC status

text: Model organism or animal

text: Indian-origin

text: Spleen,Liver

text: Adult

text: Macaca mulatta

text: female

text: Spleen,Liver


text: Oregon Health & Science University

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: Indian-origin

text: pLN,mesLN

text: Adult

text: Macaca mulatta

text: female

text: pLN,mesLN


text: Oregon Health & Science University

text: live

text: Model organism or animal

characteristic: NCBI submission package

text: Indian-origin

text: BM,PBMC

text: Adult

text: Macaca mulatta

text: male

text: BM,PBMC


text: Oregon Health & Science University

text: live

text: Model organism or animal

characteristic: SRA accession

text: Indian-origin

text: PBMC,Bone marrow

text: Adult

text: Macaca mulatta

text: male

text: PBMC,Bone marrow


text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

characteristic: breed

text: ld-LN-Left

text: Adult

text: Macaca mulatta

text: male

text: ld-LN-Left


text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

text: ld-LN-Right

characteristic: cell type

text: Adult

text: Macaca mulatta

text: male

text: ld-LN-Right


text: Oregon Health & Science University

characteristic: INSDC center name

text: live

text: Model organism or animal

text: Indian-origin

text: Lung-Left

text: Adult

text: Macaca mulatta

text: male

text: Lung-Left


text: Oregon Health & Science University

characteristic: INSDC first public

text: live

text: Model organism or animal

text: Indian-origin

text: Lung-Right

text: Adult

text: Macaca mulatta

text: male

text: Lung-Right


text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

text: PBMC,Bone marrow

characteristic: datasetId

text: Adult

text: Macaca mulatta

text: female

text: PBMC,Bone marrow


text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

text: ld-LN-Left

text: Adult

characteristic: dev stage

text: Macaca mulatta

text: female

text: ld-LN-Left


text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

text: ld-LN-Right

text: Adult

text: Macaca mulatta

characteristic: organism

text: female

text: ld-LN-Right


text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

text: Lung-Left

text: Adult

text: Macaca mulatta

text: female

characteristic: sex

text: Lung-Left


text: Oregon Health & Science University

text: live

text: Model organism or animal

text: Indian-origin

text: Lung-Right

text: Adult

text: Macaca mulatta

text: female

text: Lung-Right

characteristic: tissue


text: King Faisal University

text: live

text: Pathogen.cl

text: Haitham Elbir

text: Saudi Arabia: Hofuf

text: camel

characteristic: host

text: Endometritis

text: uterus

text: 25.22 N 49.36 E

text: Corynebacterium cystitidis

characteristic: strain

characteristic: title


characteristic: External Id

text: King Faisal University

characteristic: INSDC last update

text: live

text: Pathogen.cl

text: Haitham Elbir

text: Saudi Arabia: Hofuf

text: camel

text: uterus

text: 25.22 N 49.36 E

text: Corynebacterium cystitidis


text: Department of Geriatrics, Fujian Key Laboratory of Vascular Aging (Fujian Medical University), Fujian Medical University Union Hospital

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: age

text: Mus musculus

text: Aorta


text: Stanley Lab, Molecular and Cell Biology, Stanley Lab, UC Berkeley

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: CD4 T cells

characteristic: cell type

text: Mus musculus

text: lung CD4 T cells

text: lung

text: IN vacc

text: i.n. H1/ML-RR-cGAMP

characteristic: vaccine


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: CD4 T cells

text: Mus musculus

text: lung CD4 T cells

text: lung

text: PBS ctrl

text: mock


text: University of Cape Town

text: live

text: Pathogen.cl

text: Stellenbosch University

characteristic: collected by

characteristic: collection date

text: South Africa: Cape Town

characteristic: geo loc name

text: Homo sapiens

text: Tuberculosis

characteristic: host disease

characteristic: isolate

text: sputum

characteristic: isolation source

text: 33.9249 S 18.4241 E

characteristic: lat lon

text: Mycobacterium tuberculosis

characteristic: organism

text: Beijing

text: SAWC-507 Stationary phase growth, replicate 1


characteristic: External Id

text: University of Cape Town

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

characteristic: host

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

characteristic: strain

text: SAWC-507 Stationary phase growth, replicate 2

characteristic: title


text: University of Cape Town

characteristic: INSDC center name

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-507 Stationary phase growth, replicate 3


text: University of Cape Town

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: Stellenbosch University

characteristic: collected by

characteristic: collection date

text: South Africa: Cape Town

characteristic: geo loc name

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-507 Mid log phase growth, control, replicate 1


text: University of Cape Town

text: live

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

characteristic: host disease

characteristic: isolate

text: sputum

characteristic: isolation source

text: 33.9249 S 18.4241 E

characteristic: lat lon

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-507 Mid log phase growth, control, replicate 2


characteristic: External Id

text: University of Cape Town

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

characteristic: organism

text: Beijing

text: SAWC-507 Mid log phase growth, control, replicate 3


text: University of Cape Town

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

characteristic: host

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

characteristic: strain

text: SAWC-507 Mid log phase growth, treated with hydrogen peroxide, replicate 1

characteristic: title


text: University of Cape Town

characteristic: INSDC center name

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-507 Mid log phase growth, treated with hydrogen peroxide, replicate 2


text: University of Cape Town

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: Stellenbosch University

characteristic: collected by

characteristic: collection date

text: South Africa: Cape Town

characteristic: geo loc name

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-507 Mid log phase growth, treated with hydrogen peroxide, replicate 3


text: University of Cape Town

text: live

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

characteristic: host disease

characteristic: isolate

text: sputum

characteristic: isolation source

text: 33.9249 S 18.4241 E

characteristic: lat lon

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-507 Early log phase growth, replicate 1


characteristic: External Id

text: University of Cape Town

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

characteristic: organism

text: Beijing

text: SAWC-507 Early log phase growth, replicate 2


text: University of Cape Town

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

characteristic: host

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

characteristic: strain

text: SAWC-507 Early log phase growth, replicate 3

characteristic: title


text: University of Cape Town

characteristic: INSDC center name

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-5527 Stationary phase growth, replicate 1


text: University of Cape Town

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: Stellenbosch University

characteristic: collected by

characteristic: collection date

text: South Africa: Cape Town

characteristic: geo loc name

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-5527 Stationary phase growth, replicate 2


text: University of Cape Town

text: live

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

characteristic: host disease

characteristic: isolate

text: sputum

characteristic: isolation source

text: 33.9249 S 18.4241 E

characteristic: lat lon

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-5527 Stationary phase growth, replicate 3


characteristic: External Id

text: University of Cape Town

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

characteristic: organism

text: Beijing

text: SAWC-5527 Mid log phase growth, control, replicate 1


text: University of Cape Town

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

characteristic: host

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

characteristic: strain

text: SAWC-5527 Mid log phase growth, control, replicate 2

characteristic: title


text: University of Cape Town

characteristic: INSDC center name

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-5527 Mid log phase growth, control, replicate 3


text: University of Cape Town

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: Stellenbosch University

characteristic: collected by

characteristic: collection date

text: South Africa: Cape Town

characteristic: geo loc name

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-5527 Mid log phase growth, treated with hydrogen peroxide, replicate 1


text: University of Cape Town

text: live

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

characteristic: host disease

characteristic: isolate

text: sputum

characteristic: isolation source

text: 33.9249 S 18.4241 E

characteristic: lat lon

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-5527 Mid log phase growth, treated with hydrogen peroxide, replicate 2


characteristic: External Id

text: University of Cape Town

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

characteristic: organism

text: Beijing

text: SAWC-5527 Mid log phase growth, treated with hydrogen peroxide, replicate 3


text: University of Cape Town

text: live

characteristic: INSDC status

text: Pathogen.cl

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

characteristic: host

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

characteristic: strain

text: SAWC-5527 Early log phase growth, replicate 1

characteristic: title


text: University of Cape Town

characteristic: INSDC center name

text: live

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Stellenbosch University

text: South Africa: Cape Town

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-5527 Early log phase growth, replicate 2


text: University of Cape Town

characteristic: INSDC first public

text: live

text: Pathogen.cl

text: Stellenbosch University

characteristic: collected by

characteristic: collection date

text: South Africa: Cape Town

characteristic: geo loc name

text: Homo sapiens

text: Tuberculosis

text: sputum

text: 33.9249 S 18.4241 E

text: Mycobacterium tuberculosis

text: Beijing

text: SAWC-5527 Early log phase growth, replicate 3


text: Centre Léon Bérard

text: live

text: Generic

text: male

characteristic: gender

text: Epithelium

characteristic: group

text: Normal

characteristic: histology type

text: Mus musculus

characteristic: rnaseq run number

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Normal epithelium, biological replica 3


characteristic: External Id

text: Centre Léon Bérard

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: male

text: Epithelium

text: Normal

text: Mus musculus

characteristic: organism

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Normal epithelium, biological replica 2


text: Centre Léon Bérard

text: live

characteristic: INSDC status

text: Generic

text: male

text: Epithelium

text: Normal

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

characteristic: strain

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Normal epithelium, biological replica 1

characteristic: title


text: Centre Léon Bérard

characteristic: INSDC center name

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: male

text: Stroma

text: Tumor

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Tumor stroma, biological replica 3


text: Centre Léon Bérard

characteristic: INSDC first public

text: live

text: Generic

characteristic: SRA accession

text: male

text: Stroma

text: Tumor

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Tumor stroma, biological replica 2


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Stroma

text: Tumor

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Tumor stroma, biological replica 1


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Epithelium

text: Tumor

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Tumor epithelium, biological replica 1


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Epithelium

text: Tumor

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Tumor epithelium, biological replica 3


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Epithelium

text: Tumor

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Tumor epithelium, biological replica 2


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Stroma

text: Dysplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Dysplasia stroma, biological replica 3


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Stroma

text: Dysplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Dysplasia stroma, biological replica 1


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Stroma

text: Dysplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Dysplasia stroma, biological replica 4


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Stroma

text: Dysplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Dysplasia stroma, biological replica 2


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Epithelium

text: Dysplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Dysplasia epithelium, biological replica 4


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Epithelium

text: Dysplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Dysplasia epithelium, biological replica 1


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Epithelium

text: Dysplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Dysplasia epithelium, biological replica 3


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Epithelium

text: Dysplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Dysplasia epithelium, biological replica 2


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Stroma

text: Hyperplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Hyperplasia stroma, biological replica 3


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Stroma

text: Hyperplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Hyperplasia stroma, biological replica 2


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Stroma

text: Hyperplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Hyperplasia stroma, biological replica 1


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Epithelium

text: Hyperplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Hyperplasia epithelium, biological replica 3


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Epithelium

text: Hyperplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Hyperplasia epithelium, biological replica 2


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Epithelium

text: Hyperplasia

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Hyperplasia epithelium, biological replica 1


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Stroma

text: Normal

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Normal stroma, biological replica 3


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Stroma

text: Normal

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Normal stroma, biological replica 2


text: Centre Léon Bérard

text: live

text: Generic

text: male

text: Stroma

text: Normal

text: Mus musculus

text: CBA mice (Mus musculus)

text: CBA mice (Mus musculus)

text: Microdissected paraffin-embedded (FFPE) tongues of CBA mice, Normal stroma, biological replica 1


text: Delaware State University

text: live

text: Plant

text: Vaccinium corymbosum

characteristic: cultivar

text: seedling

characteristic: dev stage

text: USA

characteristic: geo loc name

text: Vaccinium corymbosum

text: Leaf

characteristic: tissue

text: Leaf sample from Vaccinium corymbosum


text: Delaware State University

text: live

text: Plant

text: Vaccinium darrowii

text: seedling

text: USA

text: Vaccinium darrowii

text: Leaf

text: Leaf sample from Vaccinium darrowii


text: live

text: Metagenome or environmental

characteristic: collection date

text: field collected tick tested for the presence of one or more pathogenic or potentially pathogenic tick-borne microorganisms

characteristic: description

text: USA:Illinois,DuPage,Danada Forest Preserve

text: Ixodes scapularis

characteristic: host

text: adult

characteristic: host life stage

text: whole body

text: riparian corridor of eastern deciduous forests usually dominated by oak and hickory with variable understory vegetation frequently including or dominated by invasive shrubs

characteristic: isolation source

text: 41.821479 N 88.112572 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: Individual ticks were rinsed in 70% ethanol, air dried, and homogenized using a TissueLyzer II (Qiagen, Germantown, MD) in 2 ml deep-well 96-well plates at 25 Hz for 2 x 3 minutes. Each well contained a 5 ml steel bead (Qiagen) and 50 μl genomic digestion buffer. DNA was extracted with Invitrogen’s PureLink Pro 96 kit (Fisher Scientific, Suwanee, GA) per manufacturer’s protocol and eluted in 70 μl elution buffer. Proteinase K digestion was performed overnight. DNA was quantified on a Qubit 2.0 (Life Technologies) using High Sensitivity DNA Kit. Samples containing sufficient DNA were sent for high throughput sequencing. DNA samples were quantified on a Qubit 2.0 (Life Technologies) using the Qubit dsDNA HS Assay Kit. Gene target regions were amplified using Fluidigm and sequenced using Illumina® HiSeq Rapid sequencing kit version 2 on a HiSeq 2500 sequencer (Illumina®, San Diego, CA, USA) at the W. M. Keck Center for Comparative and Functional Genomics at the University of Illinois at Urbana-Champaign as described previously (Muturi et al., 2016; doi:10.1186/s13071-016-1299-6). Briefly, sample DNA was amplified on the Fluidigm® microfluidics PCR platform with appropriate linkers and sample barcodes. The final Fluidigm® products were pooled in equimolar ratio for sequencing and spiked with 10% non-indexed PhiX control library (Illumina®) and sequenced by 2 x 250 nt paired-end sequencing on the Illumina® HiSeq® Rapid system. Fastq files were generated with the bcl2fastq v2.17.1.14 Conversion Software (Illumina®). Finally, the raw reads were demultiplexed by primer and by sample with the Fluidigm® demultiplexing pipeline v 2.0.

characteristic: samp mat process

text: Ticks were collected by dragging using a 1 meter square cloth and stored in 70% ethanol.

text: TTACGCAGTG


characteristic: External Id

text: University of Illinois at Urbana-Champaign

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.821479 N 88.112572 W

text: tick metagenome

characteristic: organism

text: primary publication

text: CAGATGTCCT

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dermacentor variabilis

text: adult

text: whole body

text: 41.821479 N 88.112572 W

text: tick metagenome

text: primary publication

text: TTCGTTCCTG


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: USA:Illinois,Lake,Lakewood

characteristic: geo loc name

text: Dermacentor variabilis

text: adult

text: whole body

text: 42.182487 N 88.37613 W

text: tick metagenome

text: primary publication

text: CACTGCTTGA


text: live

text: Metagenome or environmental

text: USA:Illinois,DuPage,Blackwell Forest Preserve

text: Ixodes scapularis

characteristic: host

text: adult

characteristic: host life stage

text: whole body

characteristic: isolation source

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: CGAGCATTGT


characteristic: External Id

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

characteristic: lat lon

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: CCAAGAAGAA


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: TCCTTGTTCT


characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

characteristic: organism

text: primary publication

text: GTAACGATGT

characteristic: title


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: TGGACTCAGA


text: live

text: Metagenome or environmental

characteristic: SRA accession

characteristic: collection date

characteristic: description

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: GGCATCATGC


text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

characteristic: host

text: adult

characteristic: host life stage

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: GTATAACGCT


characteristic: External Id

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.844885 N 88.190695 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: GCAGATAAGT


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: GTCGGCTCTA


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

characteristic: organism

text: primary publication

text: TTCGATAGCA


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: GTCTAGCAGG

characteristic: title


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: GGAACACAGG


text: live

text: Metagenome or environmental

characteristic: description

characteristic: geo loc name

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: TGGTTCGCTG


characteristic: External Id

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

characteristic: isolation source

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: CACATTAGCG


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: GAAGCGCACT


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: GCATGCCAGT


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

characteristic: organism

text: primary publication

text: GGAGACTGTA


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: TCGAACTGCA

characteristic: title


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

characteristic: geo loc name

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: GAGAGGACAT


characteristic: External Id

text: live

text: Metagenome or environmental

text: Ixodes scapularis

characteristic: host

text: adult

characteristic: host life stage

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: GAGCACGGAA


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: GCTCTAACAT


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: TGCTGGCTTG


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: TCTAGCGTGG


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

characteristic: organism

text: primary publication

text: GCATAATCGC


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: GTCGTAACAC

characteristic: title


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: GAGATTGCTA


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: GGACAGATGG


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: CTTACGTTGC


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: GTGTTCGGTC


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: CTCAAGAAGC


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

characteristic: organism

text: primary publication

text: TCTCGGATAG


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: CTCTGGACGA

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: GTACTAAGAG


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.844885 N 88.190695 W

text: tick metagenome

text: primary publication

text: TGCATGGAGC


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: USA:Illinois,DuPage,Waterfall Glen Forrest Preserve,Signal Hill

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: TTGTTGCTGT


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: USA:Illinois,DuPage,York Woods County Forest Preserve

text: Dermacentor variabilis

text: adult

text: whole body

text: 41.860117 N 87.936105 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: GAAGTCAAGC


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: USA:Illinois,Lake,Ryerson Conservation Area

text: Dermacentor variabilis

text: adult

text: whole body

text: 42.180324 N 87.908776 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: GAGACCTCTA


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Dermacentor variabilis

text: adult

text: whole body

text: 42.180324 N 87.908776 W

text: tick metagenome

characteristic: organism

text: primary publication

text: GCGCATTATG


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Dermacentor variabilis

text: adult

text: whole body

text: 42.180324 N 87.908776 W

text: tick metagenome

text: primary publication

text: GTCCAGACAT

characteristic: title


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: USA:Illinois,DuPage,Churchill Woods

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.887646 N 88.041775 W

text: tick metagenome

text: primary publication

text: TTGCACTCAG


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: USA:Illinois,DuPage,Churchill Woods

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.887646 N 88.041775 W

text: tick metagenome

text: primary publication

text: TGCGGCGATA


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: USA:Illinois,DuPage,Churchill Woods

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.887646 N 88.041775 W

text: tick metagenome

text: primary publication

text: AGTTGCTAGT


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: USA:Illinois,DuPage,Churchill Woods

text: Ixodes scapularis

text: adult

text: whole body

text: 41.887646 N 88.041775 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: AGGATTGAGG


characteristic: External Id

text: live

text: Metagenome or environmental

text: USA:Illinois,DuPage,Churchill Woods

characteristic: geo loc name

text: Dermacentor variabilis

text: adult

text: whole body

text: 41.887646 N 88.041775 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: CCAGAACAGA


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: USA:Illinois,DuPage,Churchill Woods

text: Dermacentor variabilis

text: adult

text: whole body

text: 41.887646 N 88.041775 W

text: tick metagenome

characteristic: organism

text: primary publication

text: CGTCAAGCAT


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: TGTAGGTGGA

characteristic: title


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: TTAGTGGTGA


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: GTGAAGGTAA


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: TGTTGTGGTA


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: GTTGATGAGT


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: GGTCAGTGTA


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

characteristic: organism

text: primary publication

text: GTGTGGTTGT


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: TAGGTGGAAT

characteristic: title


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: USA:Illinois,DuPage,St. James Farm Forest Preserve,McCormick Woods

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: GTCTCAATGT


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: GATGAGGTAT


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: GGTGTTAGTG


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: CATTCTCTGA


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: CATCTGGAGT


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

characteristic: organism

text: primary publication

text: GAATGGAAGA


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: GGCTGTGATC

characteristic: title


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: TGGTGCTGGA


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: TATGGTAAGG


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: GTTCGATTGT


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: GGTAGAATGA


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: TTCTCATCGT


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

characteristic: organism

text: primary publication

text: CTCAATCGTA


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: CGCTAATGTA

characteristic: title


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: GTAATGGAGT


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: CTCGTTATTC


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: GGAAGTAAGG


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: CGGTGTGTGT


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: CGTCTTCTTA


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

characteristic: organism

text: primary publication

text: TGTGAATCTC


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: CTAATCGTGT

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: CTCTTAGTTC


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: GGATAGGATC


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: GGTGTCTTGT


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: GATGGTTGTA


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: CCTCGTTGTT


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

characteristic: organism

text: primary publication

text: GGTTGGAGTT


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: TGGTGTCCGT

characteristic: title


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: CGTTAGCGTA


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.836124 N 88.162345 W

text: tick metagenome

text: primary publication

text: TACTAGGATC


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: USA:Illinois,Champaign

text: Ixodes scapularis

text: larva

text: whole body

text: on Seiurus aurocapilla captured in eastern deciduous forests usually dominated by oak and hickory with variable understory vegetation frequently including or dominated by invasive shrubs

characteristic: isolation source

text: 40.116329 N 88.243523 W

text: tick metagenome

text: primary publication

text: A Individual ticks were rinsed in 70% ethanol, air dried, and homogenized using a TissueLyzer II (Qiagen, Germantown, MD) in 2 ml deep-well 96-well plates at 25 Hz for 2 x 3 minutes. Each well contained a 5 ml steel bead (Qiagen) and 50 μl genomic digestion buffer. After tick homogenization in 80 µl (nymphs) or 100 µl (adults) 5% chelex, samples were incubated 20 min at 56 degrees Celsius, followed by an eight minute boil, and centrifugation at 4000xg for 7 minutes. Multiplex PCR followed by RLB was then performed as in Fredericks et al. (2016). Due to the requirement of purified DNA for Fluidigm analysis, a standard phenol-chloroform extraction with subsequent ethanol precipitation was done. DNA samples were quantified on a Qubit 2.0 (Life Technologies) using the Qubit dsDNA HS Assay Kit. Gene target regions were amplified using Fluidigm and sequenced using Illumina® HiSeq Rapid sequencing kit version 2 on a HiSeq 2500 sequencer (Illumina®, San Diego, CA, USA) at the W. M. Keck Center for Comparative and Functional Genomics at the University of Illinois at Urbana-Champaign as described previously (Muturi et al., 2016; doi:10.1186/s13071-016-1299-6). Briefly, sample DNA was amplified on the Fluidigm® microfluidics PCR platform with appropriate linkers and sample barcodes. The final Fluidigm® products were pooled in equimolar ratio for sequencing and spiked with 10% non-indexed PhiX control library (Illumina®) and sequenced by 2 x 250 nt paired-end sequencing on the Illumina® HiSeq® Rapid system. Fastq files were generated with the bcl2fastq v2.17.1.14 Conversion Software (Illumina®). Finally, the raw reads were demultiplexed by primer and by sample with the Fluidigm® demultiplexing pipeline v 2.0.

text: ATGTCATGCT


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: USA:Illinois,Champaign

text: Ixodes scapularis

text: larva

text: whole body

text: 40.116329 N 88.243523 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: AGTAGATCAT


characteristic: External Id

text: live

text: Metagenome or environmental

text: USA:Illinois,Champaign

characteristic: geo loc name

text: Ixodes scapularis

text: larva

text: whole body

text: 40.116329 N 88.243523 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: CAGCATCTAG


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: USA:Illinois,Champaign

text: Ixodes scapularis

text: larva

text: whole body

text: 40.116329 N 88.243523 W

text: tick metagenome

characteristic: organism

text: primary publication

text: ACATAGTATC


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: USA:Illinois,Champaign

text: Ixodes scapularis

text: larva

text: whole body

text: 40.116329 N 88.243523 W

text: tick metagenome

text: primary publication

text: CGAGACGACA

characteristic: title


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: TCATTCAGTG


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: GTGGAGAGCT


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: GTAGAAGTGG


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: TGGAGCATGT


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: GAAGGAGATA


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

characteristic: organism

text: primary publication

text: CGAATGTATG


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: TCGTGAATGA

characteristic: title


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: GAATAGCTGA


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: TTGTCACATC


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

text: adult

text: whole body

characteristic: isolation source

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: CTGGAGGCTA


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

characteristic: lat lon

text: tick metagenome

text: primary publication

text: TGTCAGCTTA


characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

characteristic: samp mat process

text: GCGTCTGAAT


characteristic: INSDC first public

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

characteristic: organism

text: primary publication

text: TTCTGTTGCC


text: live

text: Metagenome or environmental

characteristic: NCBI submission package

characteristic: SRA accession

text: Ixodes scapularis

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: TTGTCCTTGC

characteristic: title


text: live

text: Metagenome or environmental

characteristic: collection date

characteristic: description

text: Ixodes scapularis

characteristic: host

text: adult

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: CCTGTGTAGA


characteristic: External Id

text: live

text: Metagenome or environmental

characteristic: geo loc name

text: Ixodes scapularis

text: adult

characteristic: host life stage

text: whole body

text: 41.70674 N 87.95887 W

text: tick metagenome

text: primary publication

text: GATAAGAAGG