text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 24 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: female

text: gill

text: Carcinus maenas - Gill - Control - 24 hpi - replicate 1

text: Saline injection (control)


status: PUBLIC

characteristic: External Id

text: University of Exeter

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Saline injected crab gills harvested at 24 hpi (replicate 2)

characteristic: description

text: United Kingdom: Newtons Cove, Weymouth

tag: attribute

text: gill

text: Shoreline

text: Carcinus maenas

characteristic: organism

text: biological replicate 2

characteristic: replicate

text: female

characteristic: sex

text: gill

characteristic: tissue

text: Carcinus maenas - Gill - Control - 24 hpi - replicate 2

characteristic: title

text: Saline injection (control)

characteristic: treatment


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 24 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: female

text: gill

text: Carcinus maenas - Gill - Control - 24 hpi - replicate 3

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 24 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: male

text: gill

text: Carcinus maenas - Gill - Control - 24 hpi - replicate 4

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 48 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: female

text: gill

text: Carcinus maenas - Gill - Control - 48 hpi - replicate 1

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 48 hpi (replicate 2)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 2

text: female

text: gill

text: Carcinus maenas - Gill - Control - 48 hpi - replicate 2

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 48 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: female

text: gill

text: Carcinus maenas - Gill - Control - 48 hpi - replicate 3

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 48 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: male

text: gill

text: Carcinus maenas - Gill - Control - 48 hpi - replicate 4

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 168 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: female

text: gill

text: Carcinus maenas - Gill - Control - 168 hpi - replicate 1

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 168 hpi (replicate 2)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 2

text: male

text: gill

text: Carcinus maenas - Gill - Control - 168 hpi - replicate 2

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 168 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: male

text: gill

text: Carcinus maenas - Gill - Control - 168 hpi - replicate 3

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 168 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: female

text: gill

text: Carcinus maenas - Gill - Control - 168 hpi - replicate 4

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 336 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: female

text: gill

text: Carcinus maenas - Gill - Control - 336 hpi - replicate 1

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 336 hpi (replicate 2)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 2

text: male

text: gill

text: Carcinus maenas - Gill - Control - 336 hpi - replicate 2

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 336 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: male

text: gill

text: Carcinus maenas - Gill - Control - 336 hpi - replicate 3

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 336 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: female

text: gill

text: Carcinus maenas - Gill - Control - 336 hpi - replicate 4

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 672 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: female

text: gill

text: Carcinus maenas - Gill - Control - 672 hpi - replicate 1

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 672 hpi (replicate 2)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 2

text: male

text: gill

text: Carcinus maenas - Gill - Control - 672 hpi - replicate 2

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 672 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: female

text: gill

text: Carcinus maenas - Gill - Control - 672 hpi - replicate 3

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: Saline injected crab gills harvested at 672 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: male

text: gill

text: Carcinus maenas - Gill - Control - 672 hpi - replicate 4

text: Saline injection (control)


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 6 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 6 hpi - replicate 1

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 6 hpi (replicate 2)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 2

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 6 hpi - replicate 2

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 6 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 6 hpi - replicate 3

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 6 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 6 hpi - replicate 4

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 12 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 12 hpi - replicate 1

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 12 hpi (replicate 2)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 2

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 12 hpi - replicate 2

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 12 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 12 hpi - replicate 3

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 12 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 12 hpi - replicate 4

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 24 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 24 hpi - replicate 1

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 24 hpi (replicate 2)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 2

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 24 hpi - replicate 2

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 24 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 24 hpi - replicate 3

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 24 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 24 hpi - replicate 4

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 48 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 48 hpi - replicate 1

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 48 hpi (replicate 2)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 2

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 48 hpi - replicate 2

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 48 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 48 hpi - replicate 3

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 48 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 48 hpi - replicate 4

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 168 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 168 hpi - replicate 1

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 168 hpi (replicate 2)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 2

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 168 hpi - replicate 2

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 168 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 168 hpi - replicate 3

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 168 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 168 hpi - replicate 4

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 336 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 336 hpi - replicate 1

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 336 hpi (replicate 2)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 2

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 336 hpi - replicate 2

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 336 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 336 hpi - replicate 3

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 336 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 336 hpi - replicate 4

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 672 hpi (replicate 1)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 1

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 672 hpi - replicate 1

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 672 hpi (replicate 2)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 2

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 672 hpi - replicate 2

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 672 hpi (replicate 3)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 3

text: female

text: gill

text: Carcinus maenas - Gill - WSSV - 672 hpi - replicate 3

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 672 hpi (replicate 4)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 4

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 672 hpi - replicate 4

text: WSSV-infected shrimp homogenate


text: University of Exeter

text: live

text: Invertebrate

text: WSSV (-infected shrimp homogenate) injected crab gills harvested at 672 hpi (replicate 5)

text: United Kingdom: Newtons Cove, Weymouth

text: gill

text: Shoreline

text: Carcinus maenas

text: biological replicate 5

text: male

text: gill

text: Carcinus maenas - Gill - WSSV - 672 hpi - replicate 5

text: WSSV-infected shrimp homogenate


text: Cardiff University School of Medicine

text: live

text: Microbe, viral or environmental

text: Bangladesh: Dhaka

text: Homo sapiens

characteristic: host

text: blood

text: Serratia marcescens

text: Pure culture one microbial species

characteristic: strain

text: Microbe sample from Serratia marcescens


characteristic: External Id

text: Cardiff University School of Medicine

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: Bangladesh: Dhaka

text: Homo sapiens

text: blood

text: Providencia stuartii

text: Pure culture one microbial species

text: Microbe sample from Providencia stuartii


text: Cardiff University School of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: Bangladesh: Dhaka

text: Homo sapiens

text: Wound swab

text: Providencia stuartii

text: Pure culture one microbial species


text: Rouen Normandy University

text: live

characteristic: INSDC status

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.plant-associated

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

text: Pear tree

text: Mediterranean

text: Pear tree

text: Morocco: Asni Region

characteristic: geo loc name

text: Pear tree

text: King'B medium

text: 31.2422527 N 7.9865870 W

text: Bacillus altitudinis

text: Unpublished

text: MIGS Cultured Bacterial/Archaeal sample from Bacillus altitudinis


text: Shanghai University of Medicine & Health Sciences Affiliated Zhoupu Hospital

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: 6 weeks

characteristic: age

text: Shanghai

characteristic: ecotype

text: feces

characteristic: isolate

text: mouse metagenome

text: Gut feces

text: Model organism or animal sample from mouse metagenome


text: live

text: Model organism or animal

text: 7 weeks

text: Shanghai

text: feces

text: mouse metagenome

characteristic: organism

text: Gut feces

characteristic: tissue

characteristic: title


characteristic: External Id

text: live

text: Model organism or animal

text: 8 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


characteristic: INSDC center name

text: live

text: Model organism or animal

text: 9 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


characteristic: INSDC first public

text: live

text: Model organism or animal

text: 10 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


characteristic: INSDC last update

text: live

text: Model organism or animal

text: 11 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


text: live

characteristic: INSDC status

text: Model organism or animal

text: 12 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


text: live

text: Model organism or animal

text: 13 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


text: live

text: Model organism or animal

text: 14 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


text: live

text: Model organism or animal

text: 15 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


text: live

text: Model organism or animal

text: 16 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


text: live

text: Model organism or animal

text: 17 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


text: live

text: Model organism or animal

text: 18 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


text: live

text: Model organism or animal

text: 19 weeks

text: Shanghai

text: feces

text: mouse metagenome

text: Gut feces


Meat and fish

text: Kangwon National University

text: live

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: Mouse gut microbiota

text: Mouse feces

text: Feces

text: Korea: Chuncheon

text: Mus musculus

characteristic: host

text: 37.8686 N 127.7497 E

text: mouse gut metagenome

text: MIMARKS Survey related sample from mouse gut metagenome


text: Institute of Zoology, Guangdong Academy of Science

characteristic: INSDC secondary accession

text: live

text: Invertebrate

text: Nature

characteristic: breed

text: China:Guangzhou

text: guinea pig

text: Guangzhou

text: Aedes albopictus

text: Female

text: Invertebrate sample from Aedes albopictus


text: Swedish University of Agricultural Sciences

text: live

text: MIMS.me

characteristic: NCBI submission model

characteristic: NCBI submission package

text: 0 kg ha N

text: 0-20 cm

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: elev

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Ultuna Field site

text: 59.812761 N 17.8000 E

text: metagenome

characteristic: ph


text: live

text: MIMS.me

characteristic: SRA accession

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Ultuna Field site

text: 59.812761 N 17.8000 E

text: metagenome

characteristic: organism


text: live

text: MIMS.me

text: 80 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Ultuna Field site

text: 59.812761 N 17.8000 E

text: metagenome

characteristic: title


characteristic: External Id

text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Laenna Field site

text: 58.34598333 N 13.12518889 E

text: metagenome


characteristic: INSDC center name

text: live

text: MIMS.me

text: 120 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Laenna Field site

text: 58.34598333 N 13.12518889 E

text: metagenome


characteristic: INSDC first public

text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Loennstorp Field site

text: 55.66910556 N 13.10050556 E

text: metagenome


characteristic: INSDC last update

text: live

text: MIMS.me

text: 120 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Loennstorp Field site

text: 55.66910556 N 13.10050556 E

text: metagenome


text: live

characteristic: INSDC status

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Roebaecksdalen Field site

text: 63.80705 N 20.23401944 E

text: metagenome


text: live

text: MIMS.me

text: 120 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Roebaecksdalen Field site

text: 63.80705 N 20.23401944 E

text: metagenome


text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Saeby Field site

text: 59.83533333 N 17.69971944 E

text: metagenome


text: live

text: MIMS.me

text: 120 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Saeby Field site

text: 59.83533333 N 17.69971944 E

text: metagenome


text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Bjertorp Field site

text: 58.23517778 N 13.12812222 E

text: metagenome


text: live

text: MIMS.me

text: 120 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Bjertorp Field site

text: 58.23517778 N 13.12812222 E

text: metagenome


text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Foers Field site

text: 60.31571667 N 17.50408611 E

text: metagenome


text: live

text: MIMS.me

text: 120 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Foers Field site

text: 60.31571667 N 17.50408611 E

text: metagenome


text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Kungsaengen Field site

text: 59.83669167 N 17.68660556 E

text: metagenome


text: live

text: MIMS.me

text: 120 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Kungsaengen Field site

text: 59.83669167 N 17.68660556 E

text: metagenome


text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Laenna Field site

text: 58.346006 N 13.125719 E

text: metagenome


text: live

text: MIMS.me

text: 135 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Laenna Field site

text: 58.346006 N 13.125719 E

text: metagenome


text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Saeby Field site

text: 59.834936 N 17.700392 E

text: metagenome


text: live

text: MIMS.me

text: 120 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Saeby Field site

text: 59.834936 N 17.700392 E

text: metagenome


text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Stenstugu Field site

text: 57.600261 N 18.4430043 E

text: metagenome


text: live

text: MIMS.me

text: 135 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Stenstugu Field site

text: 57.600261 N 18.4430043 E

text: metagenome


text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Laenna Field site

text: 58.343893 N 13.103933 E

text: metagenome


text: live

text: MIMS.me

text: 80 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Laenna Field site

text: 58.343893 N 13.103933 E

text: metagenome


text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Boergeby Field site

text: 55.73566 N 13.04675 E

text: metagenome


text: live

text: MIMS.me

text: 150 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Boergeby Field site

text: 55.73566 N 13.04675 E

text: metagenome


text: live

text: MIMS.me

text: 0 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Vaesteroas Field site

text: 59.611272 N 16.662054 E

text: metagenome


text: live

text: MIMS.me

text: 100 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Vaesteroas Field site

text: 59.611272 N 16.662054 E

text: metagenome


text: live

text: MIMS.me

text: 135 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Stenstugu Field site

text: 57.600261 N 18.4430043 E

text: metagenome


text: live

text: MIMS.me

text: 80 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Ultuna Field site

text: 59.812761 N 17.8000 E

text: metagenome


text: live

text: MIMS.me

text: 120 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Saeby Field site

text: 59.83533333 N 17.69971944 E

text: metagenome


text: live

text: MIMS.me

text: 120 kg ha N

text: 0-20 cm

text: Keywords: GSC:MIxS;MIMS:6.0

text: Terrestrial [ENVO:00000446]

text: Agricultural Soil [ENVO:ENVO:00002259]

text: soil [ENVO:00001998]

text: Sweden: Lonnstorp Field site

text: 55.66910556 N 13.10050556 E

text: metagenome


text: Lomonosov Moscow State University, Moscow, Russia

text: live

text: Metagenome or environmental

text: 14 days

characteristic: Period

text: benomyl (10x application rate)

characteristic: Treatment

text: Agrosoddy-podzolic soil was dried at 40 ℃ and sieved through a 1 mm sieve. 100 g of soil was mixed in a mortar with 20 ml of water (control variants) or with 20 ml of water supplemented with pesticide preparations or their mixture (application rate =). After that, the soil samples were placed in 250 ml glass jars. Agrosoddy-podzolic soil is rather poor (Corg=1.5%), therefore microbiological processes go on in it rather slowly, which can complicate monitoring the state of the microbial community. Because of this, we decided to include in some experiment variants with the initiation of succession due to the addition of an additional carbon source. Preliminary experiments with measuring carbon dioxide emissions showed that starch in an amount of 5 g/kg of air-dry soil was best suited for this purpose. Along with the starch, we also introduced mineral salts into the soil in order to avoid NPK limitation. Moreover, we introduced K2HPO4 and (NH4)2SO4 in an amount of 1 g/kg.

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with benomyl (10x application rate), 14 days


characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: 14 days

text: benomyl (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with benomyl (1x application rate), 14 days


text: replicate 1

characteristic: Biological replicate

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: 14 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, non-treated (control for pesticides mix), 14 days, replicate 1


text: replicate 2

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: 14 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, non-treated (control for pesticides mix), 14 days, replicate 2


text: live

text: Metagenome or environmental

text: 14 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, non-treated (control for single pesticides), 14 days


text: live

text: Metagenome or environmental

text: 28 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, non-treated (control for pesticides mix), 28 days


text: live

text: Metagenome or environmental

text: 56 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, non-treated (control for pesticides mix), 56 days


text: live

text: Metagenome or environmental

text: 7 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, non-treated (control for pesticides mix), 7 days


text: live

text: Metagenome or environmental

text: 14 days

text: imidacloprid (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with imidacloprid (10x application rate), 14 days


text: live

text: Metagenome or environmental

text: 14 days

text: imidacloprid (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with imidacloprid (1x application rate), 14 days


text: live

text: Metagenome or environmental

text: 14 days

text: metribuzin (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with metribuzin (10x application rate), 14 days


text: live

text: Metagenome or environmental

text: 14 days

text: metribuzin (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with metribuzin (1x application rate), 14 days


text: live

text: Metagenome or environmental

text: 14 days

text: pesticides mix (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with pesticides mix (10x application rate), 14 days


text: live

text: Metagenome or environmental

text: 28 days

text: pesticides mix (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with pesticides mix (10x application rate), 28 days


text: live

text: Metagenome or environmental

text: 56 days

text: pesticides mix (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with pesticides mix (10x application rate), 56 days


text: Lomonosov Moscow State University, Moscow, Russia

text: live

text: Metagenome or environmental

text: 7 days

text: pesticides mix (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome


text: live

text: Metagenome or environmental

text: 14 days

text: pesticides mix (1x application rate)

text: Agrosoddy-podzolic soil was dried at 40 ℃ and sieved through a 1 mm sieve. 100 g of soil was mixed in a mortar with 20 ml of water (control variants) or with 20 ml of water supplemented with pesticide preparations or their mixture (application rate =). After that, the soil samples were placed in 250 ml glass jars. Agrosoddy-podzolic soil is rather poor (Corg=1.5%), therefore microbiological processes go on in it rather slowly, which can complicate monitoring the state of the microbial community. Because of this, we decided to include in some experiment variants with the initiation of succession due to the addition of an additional carbon source. Preliminary experiments with measuring carbon dioxide emissions showed that starch in an amount of 5 g/kg of air-dry soil was best suited for this purpose. Along with the starch, we also introduced mineral salts into the soil in order to avoid NPK limitation. Moreover, we introduced K2HPO4 and (NH4)2SO4 in an amount of 1 g/kg.

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with pesticides mix (1x application rate), 14 days


text: live

text: Metagenome or environmental

text: 28 days

text: pesticides mix (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with pesticides mix (1x application rate), 28 days


text: live

text: Metagenome or environmental

text: 56 days

text: pesticides mix (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil, treated with pesticides mix (1x application rate), 56 days


text: live

text: Metagenome or environmental

text: 7 days

text: pesticides mix (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome


text: live

text: Metagenome or environmental

text: 14 days

text: benomyl (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with benomyl (10x application rate), 14 days


text: live

text: Metagenome or environmental

text: 14 days

text: benomyl (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with benomyl (1x application rate), 14 days


text: replicate 1

text: live

text: Metagenome or environmental

text: 14 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg), non-treated (control for pesticides mix), 14 days, replicate 1


text: replicate 2

text: live

text: Metagenome or environmental

text: 14 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg), non-treated (control for pesticides mix), 14 days, replicate 2


text: live

text: Metagenome or environmental

text: 14 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg), non-treated (control for single pesticides), 14 days


text: live

text: Metagenome or environmental

text: 28 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg), non-treated (control for pesticides mix), 28 days


text: live

text: Metagenome or environmental

text: 56 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg), non-treated (control for pesticides mix), 56 days


text: live

text: Metagenome or environmental

text: 7 days

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg), non-treated (control for pesticides mix), 7 days


text: live

text: Metagenome or environmental

text: 14 days

text: imidacloprid (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with imidacloprid (10x application rate), 14 days


text: live

text: Metagenome or environmental

text: 14 days

text: imidacloprid (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with imidacloprid (1x application rate), 14 days


text: live

text: Metagenome or environmental

text: 14 days

text: metribuzin (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with metribuzin (10x application rate), 14 days


text: live

text: Metagenome or environmental

text: 14 days

text: metribuzin (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with metribuzin (1x application rate), 14 days


text: Lomonosov Moscow State University, Moscow, Russia

text: live

text: Metagenome or environmental

text: 14 days

text: pesticides mix (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with pesticides mix (10x application rate), 14 days


text: live

text: Metagenome or environmental

text: 28 days

text: pesticides mix (10x application rate)

text: Agrosoddy-podzolic soil was dried at 40 ℃ and sieved through a 1 mm sieve. 100 g of soil was mixed in a mortar with 20 ml of water (control variants) or with 20 ml of water supplemented with pesticide preparations or their mixture (application rate =). After that, the soil samples were placed in 250 ml glass jars. Agrosoddy-podzolic soil is rather poor (Corg=1.5%), therefore microbiological processes go on in it rather slowly, which can complicate monitoring the state of the microbial community. Because of this, we decided to include in some experiment variants with the initiation of succession due to the addition of an additional carbon source. Preliminary experiments with measuring carbon dioxide emissions showed that starch in an amount of 5 g/kg of air-dry soil was best suited for this purpose. Along with the starch, we also introduced mineral salts into the soil in order to avoid NPK limitation. Moreover, we introduced K2HPO4 and (NH4)2SO4 in an amount of 1 g/kg.

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with pesticides mix (10x application rate), 28 days


text: live

text: Metagenome or environmental

text: 56 days

text: pesticides mix (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with pesticides mix (10x application rate), 56 days


text: live

text: starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg)

text: Metagenome or environmental

text: 7 days

text: pesticides mix (10x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome


text: live

text: Metagenome or environmental

text: 14 days

text: pesticides mix (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with pesticides mix (1x application rate), 14 days


text: live

text: Metagenome or environmental

text: 28 days

text: pesticides mix (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with pesticides mix (1x application rate), 28 days


text: live

text: Metagenome or environmental

text: 56 days

text: pesticides mix (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: Agrosoddy-podzolic soil with introduced starch (5 g/kg) and K2HPO4 + (NH4)2SO4 (1 g/kg) treated with pesticides mix (1x application rate), 56 days


text: live

text: Metagenome or environmental

text: 7 days

text: pesticides mix (1x application rate)

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome


text: NTC replicate 1 (bacterial experiment)

text: live

text: Metagenome or environmental

text: No template control

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: No template control, bacterial, plate 20


text: NTC replicate 2 (bacterial experiment)

text: live

text: Metagenome or environmental

text: No template control

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: No template control, bacterial, plate 24


text: NTC replicate 3 (bacterial experiment)

text: live

text: Metagenome or environmental

text: No template control

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: No template control, bacterial, plate 25


text: NTC replicate 4 (bacterial experiment)

text: live

text: Metagenome or environmental

text: No template control

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: No template control, bacterial, plate 27


text: NTC replicate 5 (bacterial experiment)

text: live

text: Metagenome or environmental

text: No template control

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: No template control, bacterial, plate 28


NC.extraction

text: NTC for DNA extraction step

text: live

text: Metagenome or environmental

text: No template control

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: No template control, bacterial, DNA extraction step


text: NTC replicate 1 (fungal experiment)

text: live

text: Metagenome or environmental

text: No template control

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: No template control, fungal, plate 33-I


text: NTC replicate 2 (fungal experiment)

text: live

text: Metagenome or environmental

text: No template control

text: Russia: Moscow

text: Agrosoddy-podzolic soil (horizons O, A)

text: 55.712314 N 37.543667 E

text: soil metagenome

text: No template control, fungal, plate 33-II


text: LOEWE Centre for Translational Biodiversity

text: live

text: Invertebrate

text: P.Frandsen

characteristic: collected by

characteristic: collection date

text: larvae

characteristic: dev stage

text: USA: Utah, Utah County, Big Springs Creek

characteristic: geo loc name

characteristic: isolate

text: freshwater stream

characteristic: isolation source

text: 40.329720 N 111.527220 W

characteristic: lat-lon

text: Rhyacophila brunnea

text: DNA

characteristic: tissue

text: Invertebrate sample from Rhyacophila brunnea


characteristic: External Id

text: Bernstein Lab, Oncological Sciences, Mount Sinai School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: Lenti-CRISPR V2 Cas9 + sgRNA

characteristic: construct

text: metastatic melanoma

characteristic: disease state

characteristic: melanoma molecular subtype

text: Homo sapiens

characteristic: organism

text: SKmel147 ARID2 KO

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Lenti-CRISPR V2 Cas9 + sgRNA

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: H3K27ac - Abcam #ab4729

characteristic: antibody

text: Lenti-CRISPR V2 Cas9 + sgRNA

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 KO


text: live

text: Generic

text: H3K27ac - Abcam #ab4729

text: Lenti-CRISPR V2 Cas9 + sgRNA

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 WT


text: live

text: Generic

text: H3K27ac - Abcam #ab4729

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 WT


text: live

text: Generic

text: MITF - Sigma A. #HPA003259

text: Lenti-CRISPR V2 Cas9 + sgRNA

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 KO


text: live

text: Generic

text: MITF - Sigma A. #HPA003259

text: Lenti-CRISPR V2 Cas9 + sgRNA

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 WT


text: live

text: Generic

text: MITF - Sigma A. #HPA003259

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 WT


text: live

text: Generic

text: SS18 - Cell Signaling #21792 D6I4Z

text: Lenti-CRISPR V2 Cas9 + sgRNA

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 KO


text: live

text: Generic

text: SS18 - Cell Signaling #21792 D6I4Z

text: Lenti-CRISPR V2 Cas9 + sgRNA

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 WT


text: live

text: Generic

text: SS18 - Cell Signaling #21792 D6I4Z

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 WT


text: live

text: Generic

text: FOSL2 - Santa Cruz #sc-604

text: Lenti-Cas9 + PLKO sgRNA stable infection

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 KO


text: live

text: Generic

text: metastatic melanoma

text: Homo sapiens

text: 501mel melanoma cell lines


text: live

text: Generic

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 melanoma cell line


text: live

text: Generic

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 melanoma cell line


text: live

text: Generic

text: Lenti-CRISPR V2 Cas9 + sgRNA

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 KO


text: live

text: Generic

text: Lenti-CRISPR V2 Cas9 + sgRNA

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 WT


text: live

text: Generic

text: metastatic melanoma

text: Homo sapiens

text: 501mel ARID2 WT


text: live

text: Generic

text: Lenti-CRISPR V2 Cas9 + sgRNA

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 KO


text: live

text: Generic

text: ARID2 - Cell signaling #82342 D8D8U

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 KO


text: live

text: Generic

text: ARID2 - Cell signaling #82342 D8D8U

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: Lenti-CRISPR V2 Cas9 + sgRNA

text: metastatic melanoma

text: Homo sapiens

text: 501mel melanoma cell lines


text: live

text: Generic

text: H3K27ac - Abcam #ab4729

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: H3K27ac - Abcam #ab4729

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: BRG1 - Abcam #ab110641

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: SS18 - Cell Signaling #21792 D6I4Z

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 KO


text: live

text: Generic

text: SS18 - Cell Signaling #21792 D6I4Z

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: SS18 - Cell Signaling #21792 D6I4Z

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: FOSL2 - Santa Cruz #sc-604

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: FOSL2 - Santa Cruz #sc-604

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: TEAD4 - Santa Cruz #sc-101184

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 KO


text: live

text: Generic

text: TEAD4 - Santa Cruz #sc-101184

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: TEAD4 - Santa Cruz #sc-101184

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: FOSL2 - Santa Cruz #sc-604

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 KO


text: live

text: Generic

text: H3K27me3 - Epicypher #13-0030

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 KO


text: live

text: Generic

text: H3K27me3 - Epicypher #13-0030

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: H3K27me3 - Epicypher #13-0030

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: CTCF - Millipore #07-729

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 KO


text: live

text: Generic

text: CTCF - Millipore #07-729

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: CTCF - Millipore #07-729

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 WT


text: live

text: Generic

text: H3K27ac - Abcam #ab4729

text: metastatic melanoma

text: Homo sapiens

text: SKmel147 ARID2 KO


text: Medical Oncology, VUMC

text: live

text: Generic

characteristic: cell type

text: Mus musculus

text: B16F10 tumor

characteristic: strain background

text: tumor

text: TRX_CP_3 [6_TRXtr-Vim_4_4]

text: vaccinated against a tumor vascular target

characteristic: treatment


characteristic: External Id

text: Medical Oncology, VUMC

characteristic: INSDC center name

text: live

text: Generic

text: Mus musculus

text: B16F10 tumor

text: tumor

characteristic: tissue

text: TRX_CP_2 [5_TRXtr-Vim_4_3]


text: Medical Oncology, VUMC

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: B16F10 tumor

text: tumor

text: TRX_CP_1 [4_TRXtr-Vim_3_5]


text: Medical Oncology, VUMC

text: live

text: Generic

text: Mus musculus

text: B16F10 tumor

text: tumor

text: TRX_3 [3_TRXtr_1_4]

text: control vaccinated


text: Medical Oncology, VUMC

text: live

text: Generic

text: Mus musculus

text: B16F10 tumor

text: tumor

text: TRX_2 [2_TRXtr_1_2]

text: control vaccinated


text: Medical Oncology, VUMC

text: live

text: Generic

text: Mus musculus

text: B16F10 tumor

text: tumor

text: TRX_1 [1_TRXtr_1_1]

text: control vaccinated


text: Schramek Lab, Lunenfeld- Tanenbaum Research Institute

text: live

text: Generic

text: Myc anchored

characteristic: anchor

text: ES-derived neural progenitor cells

text: Mus musculus

text: Neural progenitor cells

text: C57BL/6 rs557 A/G

characteristic: strain

text: Neural progenitor cells - rs557 A/G- myc

text: untreated


text: live

text: Generic

text: Myc anchored

text: ES-derived neural progenitor cells

text: Mus musculus

characteristic: organism

text: Neural progenitor cells

text: C57BL/6 rs557 A/A

text: Neural progenitor cells - rs557 A/A- myc

characteristic: title

text: untreated


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: NestinCreERT2; Cas9 fl/+

characteristic: genotype

text: Mus musculus

text: Healthy brain tissue

text: Healthy brain tissue


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Idh R132/+; p53 R270H/+; Cas9 fl/+

text: Mus musculus

text: Type II Low Grade glioma Tumor Tissue

text: Type II Low Grade glioma Tumor Tissue

text: cohort III 848


text: live

text: Generic

text: Idh R132/+; p53 R270H/+; Cas9 fl/+

text: Mus musculus

text: Type II Low Grade glioma Tumor Tissue

text: Type II Low Grade glioma Tumor Tissue


text: live

text: Generic

text: Idh R132/+; p53 R270H/+; Cas9 fl/+

text: Mus musculus

text: Type II Low Grade glioma Tumor Tissue

text: Type II Low Grade glioma Tumor Tissue

text: cohort I 206


text: live

text: Generic

text: Idh R132/+; p53 R270H/+; Cas9 fl/+

text: Mus musculus

text: Type II Low Grade glioma Tumor Tissue

text: Type II Low Grade glioma Tumor Tissue

text: cohort I 205


text: CBL, Biological Science, KAIST(Korea Advanced Institute of Science and Technology)

text: live

text: Generic

text: In-house generated

characteristic: chip antibody

text: Wild-type

text: Mus musculus

text: E14Tg2a (mESCs)


text: live

text: Generic

text: IgG (12-371, Millipore)

text: Wild-type

text: Mus musculus

text: E14Tg2a (mESCs)


text: live

text: Generic

text: Chd4 (ab70469, Abcam)

text: Wild-type

text: Mus musculus

text: E14Tg2a (mESCs)


text: live

text: Generic

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against Chd4

characteristic: treatment


characteristic: External Id

text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: ChIP_seq_Input_forH3K9me3_Control_rep2_3

text: siRNA against EGFP


characteristic: INSDC center name

text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: ChIP_seq_Input_forH3K9me3_Control_rep2_2

text: siRNA against EGFP


text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: ChIP_seq_Input_forH3K9me3_Control_rep2_1

text: siRNA against EGFP


text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP


text: live

text: Generic

text: H3K9me3 (ab8898, Abcam)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against Chd4


text: live

text: Generic

text: H3K9me3 (ab8898, Abcam)

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux for 6hr, withdraw Aux for 30min


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux for 6hr, withdraw Aux for 0min


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP treated for 48hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_CTCF_Chd4KD_48hr_rep2

text: siRNA against Chd4 treated for 48hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_CTCF_Chd4KD_48hr_rep1

text: siRNA against Chd4 treated for 48hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_CTCF_Chd4KD_12hr_rep2

text: siRNA against Chd4 treated for 12hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_CTCF_Chd4KD_12hr_rep1

text: siRNA against Chd4 treated for 12hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_CTCF_Chd4KD_06hr_rep2

text: siRNA against Chd4 treated for 6hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_CTCF_Chd4KD_06hr_rep1

text: siRNA against Chd4 treated for 6hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_CTCF_Control_rep2

text: siRNA against EGFP treated for 48hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_CTCF_Control_rep1

text: siRNA against EGFP treated for 48hr


text: live

text: Generic

text: Rad21 (ab992, Abcam)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux


text: live

text: Generic

text: Rad21 (ab992, Abcam)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux (auxin treated for 12 hours)


text: live

text: Generic

text: Rad21 (ab992, Abcam)

text: Mus musculus

text: E14Tg2a (mESCs)

text: -Aux


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: ++Aux (auxin treated for 48 hours)


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: -Aux


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_Input_forCTCFH3_pAux_12hr_rep2

text: +Aux for 6hr, withdraw Aux for 12hr


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_Input_forCTCFH3_pAux_12hr_rep1

text: +Aux for 6hr, withdraw Aux for 12hr


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_Input_forCTCFH3_pAux_3hr_rep2

text: +Aux for 6hr, withdraw Aux for 3hr


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_Input_forCTCFH3_pAux_3hr_rep1

text: +Aux for 6hr, withdraw Aux for 3hr


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_Input_forCTCFH3_pAux_30m_rep2

text: +Aux for 6hr, withdraw Aux for 30min


text: CBL, Biological Science, KAIST(Korea Advanced Institute of Science and Technology)

text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_Input_forCTCFH3_pAux_30m_rep1

text: +Aux for 6hr, withdraw Aux for 30min


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_Input_forCTCFH3_pAux_0m_rep2

text: +Aux for 6hr, withdraw Aux for 0min


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_Input_forCTCFH3_pAux_0m_rep1

text: +Aux for 6hr, withdraw Aux for 0min


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_Input_forCTCFH3_mAux_rep2

text: -Aux


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_Input_forCTCFH3_mAux_rep1

text: -Aux


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux for 6hr, withdraw Aux for 12hr


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux for 6hr, withdraw Aux for 3hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against Chd4


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_Input_forCTCF_ppAux_rep1

text: ++Aux (auxin treated for 48 hours)


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_Input_forCTCF_mAux_rep2

text: -Aux


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_Input_forCTCF_mAux_rep1

text: -Aux


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_CTCF_ppAux_FLAG-CHD4-CD2_rep2

text: ++Aux transfected with FLAG-CHD4-CD2


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_CTCF_ppAux_FLAG-CHD4-CD2_rep1

text: ++Aux transfected with FLAG-CHD4-CD2


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_CTCF_ppAux_FLAG-CHD4-CD1_rep2

text: ++Aux transfected with FLAG-CHD4-CD1


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_CTCF_ppAux_FLAG-CHD4-CD1_rep1

text: ++Aux transfected with FLAG-CHD4-CD1


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_CTCF_ppAux_FLAG-CHD4-WT_rep2

text: ++Aux transfected with FLAG-CHD4-WT


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_CTCF_ppAux_FLAG-CHD4-WT_rep1

text: ++Aux transfected with FLAG-CHD4-WT


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: ++Aux


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: -Aux


text: live

text: Generic

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against Chd4


text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux (auxin treated for 12 hours)


text: live

text: Generic

text: Chd4-mAID (auxin inducible degron)

text: Mus musculus

text: E14Tg2a (mESCs)

text: -Aux (auxin untreated)


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_Input_forCTCF_ppAux_FLAG-CHD4-CD2_rep2

text: ++Aux transfected with FLAG-CHD4-CD2


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_Input_forCTCF_ppAux_FLAG-CHD4-CD2_rep1

text: ++Aux transfected with FLAG-CHD4-CD2


text: CBL, Biological Science, KAIST(Korea Advanced Institute of Science and Technology)

text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_Input_forCTCF_ppAux_FLAG-CHD4-CD1_rep2

text: ++Aux transfected with FLAG-CHD4-CD1


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_Input_forCTCF_ppAux_FLAG-CHD4-CD1_rep1

text: ++Aux transfected with FLAG-CHD4-CD1


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_Input_forCTCF_ppAux_FLAG-CHD4-WT_rep2

text: ++Aux transfected with FLAG-CHD4-WT


text: live

text: Generic

text: Rad21 (ab992, Abcam)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against Chd4


text: live

text: Generic

text: Rad21 (ab992, Abcam)

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux (auxin treated for 12 hours)


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_Input_forCTCF_ppAux_FLAG-CHD4-WT_rep1

text: ++Aux transfected with FLAG-CHD4-WT


text: live

text: Generic

text: Mus musculus

text: E14Tg2a (mESCs)

text: RNA_Binding_ChIP_seq_Input_forCTCF_ppAux_rep2

text: ++Aux


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_H3_Chd4KD_06hr_rep2

text: siRNA against Chd4 treated for 6hr


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_H3_Chd4KD_06hr_rep1

text: siRNA against Chd4 treated for 6hr


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP treated for 48hr


text: live

text: Generic

text: H3K9me3 (ab8898, Abcam)

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP


text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP


text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: ChIP_seq_Input_forH3K4me1me3_Control_rep2

text: siRNA against EGFP


text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: ChIP_seq_Input_forH3K4me1me3_Control_rep1

text: siRNA against EGFP


text: live

text: Generic

text: H3K27me3 (07-449, Millipore)

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP


text: live

text: Generic

text: H3K27ac (ab4729, Abcam)

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP


text: live

text: Generic

text: In-house generated

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against EGFP


text: live

text: Generic

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: siRNA against Chd4


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux for 6hr, withdraw Aux for 0min


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: -Aux


text: live

text: Generic

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_Input_forCTCFH3_Chd4KD_48hr_rep2

text: siRNA against Chd4 treated for 48hr


text: live

text: Generic

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_Input_forCTCFH3_Chd4KD_48hr_rep1

text: siRNA against Chd4 treated for 48hr


text: live

text: Generic

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_Input_forCTCFH3_Chd4KD_12hr_rep2

text: siRNA against Chd4 treated for 12hr


text: live

text: Generic

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_Input_forCTCFH3_Chd4KD_12hr_rep1

text: siRNA against Chd4 treated for 12hr


text: live

text: Generic

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_Input_forCTCFH3_Chd4KD_06hr_rep2

text: siRNA against Chd4 treated for 6hr


text: live

text: Generic

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_Input_forCTCFH3_Chd4KD_06hr_rep1

text: siRNA against Chd4 treated for 6hr


text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_Input_forH3_Control_rep2

text: siRNA against EGFP treated for 48hr


text: CBL, Biological Science, KAIST(Korea Advanced Institute of Science and Technology)

text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_Input_forH3_Control_rep1

text: siRNA against EGFP treated for 48hr


text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_Input_forCTCF_Control_rep2

text: siRNA against EGFP treated for 48hr


text: live

text: Generic

text: Wild-type Control

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_Input_forCTCF_Control_rep1

text: siRNA against EGFP treated for 48hr


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_H3_Chd4KD_48hr_rep2

text: siRNA against Chd4 treated for 48hr


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_H3_Chd4KD_48hr_rep1

text: siRNA against Chd4 treated for 48hr


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_H3_Chd4KD_12hr_rep2

text: siRNA against Chd4 treated for 12hr


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Wild-type Chd4KD

text: Mus musculus

text: E14Tg2a (mESCs)

text: Temporal_siRNA_ChIP_seq_H3_Chd4KD_12hr_rep1

text: siRNA against Chd4 treated for 12hr


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux for 6hr, withdraw Aux for 0min


text: live

text: Generic

text: H3 (ab1791, Abcam)

text: Mus musculus

text: E14Tg2a (mESCs)

text: -Aux


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_CTCF_pAux_12hr_rep2

text: +Aux for 6hr, withdraw Aux for 12hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: AuxWithdraw_ChIP_seq_CTCF_pAux_12hr_rep1

text: +Aux for 6hr, withdraw Aux for 12hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux for 6hr, withdraw Aux for 3hr


text: live

text: Generic

text: CTCF (07-729, Millipore)

text: Mus musculus

text: E14Tg2a (mESCs)

text: +Aux for 6hr, withdraw Aux for 30min


text: Lei Ding, Columbia University Medical Center

text: live

text: Generic

text: HSC

characteristic: cell type

text: Tpo-/-

text: Mus musculus

text: HSCs from TpoKO P0 livers

text: liver

characteristic: tissue

text: TpoKO HSC 3 (Tsc1)


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: HSC

text: Tpo-/-

text: Mus musculus

text: HSCs from TpoKO P0 livers

text: liver

text: TpoKO HSC 2 (Tsc1)


text: live

text: Generic

characteristic: SRA accession

text: HSC

text: Tpo-/-

text: Mus musculus

text: HSCs from TpoKO P0 livers

text: liver

text: TpoKO HSC 1 (Tsc1)


text: live

text: Generic

text: HSC

text: control (Tpo wild-type)

text: Mus musculus

text: HSCs from control P0 livers

characteristic: strain

text: liver

text: Control HSC 3 (Tsc1)


text: live

text: Generic

text: HSC

text: control (Tpo wild-type)

text: Mus musculus

characteristic: organism

text: HSCs from control P0 livers

text: liver

text: Control HSC 2 (Tsc1)


text: live

text: Generic

text: HSC

text: Tpo-/-

text: Mus musculus

text: HSCs from TpoKO P0 livers

text: liver

text: TpoKO HSC 3

characteristic: title


characteristic: INSDC secondary accession

text: live

text: Generic

text: HSC

text: Tpo-/-

text: Mus musculus

text: HSCs from TpoKO P0 livers

text: liver

text: TpoKO HSC 2


text: live

characteristic: INSDC status

text: Generic

text: HSC

text: Tpo-/-

text: Mus musculus

text: HSCs from TpoKO P0 livers

text: liver

text: TpoKO HSC 1


text: live

text: Generic

text: HSC

text: wild-type

characteristic: genotype

text: Mus musculus

text: HSCs from WT P0 livers

text: liver

text: WT HSC 4


text: live

text: Generic

characteristic: NCBI submission model

text: HSC

text: wild-type

text: Mus musculus

text: HSCs from WT P0 livers

text: liver

text: WT HSC 3


text: live

text: Generic

characteristic: NCBI submission package

text: HSC

text: control (Tpo wild-type)

text: Mus musculus

text: HSCs from control P0 livers

text: liver

text: Control HSC 1 (Tsc1)


text: live

text: Generic

text: HSC

text: Tpo-/-

text: Mus musculus

text: HSCs from TpoKO P0 livers

text: liver

text: TpoKO HSC 5


text: live

text: Generic

text: HSC

text: Tpo-/-

text: Mus musculus

text: HSCs from TpoKO P0 livers

text: liver

text: TpoKO HSC 4


text: live

text: Generic

text: HSC

text: wild-type

text: Mus musculus

text: HSCs from WT P0 livers

text: liver

text: WT HSC 2


text: live

text: Generic

text: HSC

text: wild-type

text: Mus musculus

text: HSCs from WT P0 livers

text: liver

text: WT HSC 1


text: live

text: Generic

text: HSC

text: wild-type

text: Mus musculus

text: FSC-A Low HSCs from WT P0 livers

text: liver

text: FSC-A Low HSC 3


text: live

text: Generic

text: HSC

text: wild-type

text: Mus musculus

text: FSC-A Low HSCs from WT P0 livers

text: liver

text: FSC-A Low HSC 2


text: live

text: Generic

text: HSC

text: wild-type

text: Mus musculus

text: FSC-A Low HSCs from WT P0 livers

text: liver

text: FSC-A Low HSC 1


text: live

text: Generic

text: HSC

text: wild-type

text: Mus musculus

text: FSC-A High HSCs from WT P0 livers

text: liver

text: FSC-A High HSC 4


text: live

text: Generic

text: HSC

text: wild-type

text: Mus musculus

text: FSC-A High HSCs from WT P0 livers

text: liver

text: FSC-A High HSC 3


text: live

text: Generic

text: HSC

text: wild-type

text: Mus musculus

text: FSC-A High HSCs from WT P0 livers

text: liver

text: FSC-A High HSC 2


text: live

text: Generic

text: HSC

text: wild-type

text: Mus musculus

text: FSC-A High HSCs from WT P0 livers

text: liver

text: FSC-A High HSC 1


text: live

text: Generic

text: HSC

text: Vav1-cre; Tsc1fl/fl; TpoKO

text: Mus musculus

text: HSCs from Vav1-cre; Tsc1fl/fl; TpoKO P0 livers

text: liver

text: Tpo Tsc1KO HSC 4 (Tsc1)


text: live

text: Generic

text: HSC

text: Vav1-cre; Tsc1fl/fl; TpoKO

text: Mus musculus

text: liver

text: Tpo Tsc1KO HSC 3 (Tsc1)


text: live

text: Generic

text: HSC

text: Vav1-cre; Tsc1fl/fl; TpoKO

text: Mus musculus

text: liver

text: Tpo Tsc1KO HSC 2 (Tsc1)


text: live

text: Generic

text: HSC

text: Vav1-cre; Tsc1fl/fl; TpoKO

text: Mus musculus

text: liver

text: Tpo Tsc1KO HSC 1 (Tsc1)


text: Blanco Lab, Biomedical Sciences, University of Pennsylvania

text: live

text: Generic

text: Mus musculus

text: MMTV-PyMT; Dll1 mcherry+

text: primary mouse breast cancer-associated fibroblasts

text: R4B: TRT 6D CAF

text: with targetd radiation at day 6


text: live

text: Generic

text: Mus musculus

text: MMTV-PyMT; Dll1 mcherry+

text: R4A: TRT 6D CAF

text: with targetd radiation at day 6


text: live

text: Generic

text: Mus musculus

text: MMTV-PyMT; Dll1 mcherry+

text: R3B: TRT 6D CTRL CAF

text: no radiation


text: live

text: Generic

text: Mus musculus

text: MMTV-PyMT; Dll1 mcherry+

text: R3A: TRT 6D CTRL CAF

text: no radiation


text: live

text: Generic

text: Mus musculus

text: MMTV-PyMT; Dll1 mcherry+

text: primary mouse breast cancer

text: R14B: TRT-30d Tumor Mch+ 2

text: with targetd radiation


text: live

text: Generic

text: Mus musculus

text: MMTV-PyMT; Dll1 mcherry+

text: primary mouse breast cancer

text: R14A: TRT-30d Tumor Mch+ 1

text: with targetd radiation


text: live

text: Generic

text: Mus musculus

text: MMTV-PyMT; Dll1 mcherry+

text: primary mouse breast cancer

text: R11B: Control tumor Mch+ 2

text: no radiation


text: live

text: Generic

text: Mus musculus

text: MMTV-PyMT; Dll1 mcherry+

text: primary mouse breast cancer

text: R11A: Control Tumor Mch+ 1

text: no radiation


text: Nanjing Agricultural University

text: live

text: Metagenome or environmental

text: Dairy cattle

characteristic: host

text: digesta samples

text: gut metagenome

text: luminal digesta samples


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: Homo sapiens

characteristic: parental cell line

text: SUM159 Cells ITGB4-High

text: SUM159 Cells ITGB4-High

characteristic: subline

text: MWC211_SUM159 CD104-high_Input


characteristic: External Id

text: Syros Pharmaceuticals

characteristic: INSDC center name

text: live

text: Generic

text: mammary carcinoma cells

text: H3K27ac (Abcam ab4729)

characteristic: chip antibody

text: Homo sapiens

text: SUM159 Cells ITGB4-High

text: SUM159 Cells ITGB4-High

text: MWC210_SUM159 CD104-high_H3K27Ac


text: Syros Pharmaceuticals

characteristic: INSDC first public

text: live

text: Generic

text: mammary carcinoma cells

characteristic: cell type

text: Homo sapiens

text: SUM159 Cells ITGB4-Low

text: SUM159 Cells ITGB4-Low

text: MWC209_SUM159 CD104-low_Input


text: Syros Pharmaceuticals

characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: mammary carcinoma cells

text: H3K27ac (Abcam ab4729)

text: Homo sapiens

text: SUM159 Cells ITGB4-Low

text: SUM159 Cells ITGB4-Low

text: MWC208_SUM159 CD104-low_H3K27Ac


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: p63 (Cell Signalling 13109S)

text: Homo sapiens

characteristic: organism

text: SUM159 Cells ITGB4-Hi

text: SUM159 Cells ITGB4-High

text: YC15 (p63 CST) SUM159 ITGB4-Hi


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: p63 (Cell Signalling 13109S)

text: Homo sapiens

text: SUM159 Cells ITGB4-Low

text: SUM159 Cells ITGB4-Low

text: YC20 (p63 CST) SUM159 ITGB4-Low

characteristic: title


text: Syros Pharmaceuticals

characteristic: INSDC secondary accession

text: live

text: Generic

text: mammary carcinoma cells

text: p73 (Bethyl A300-126A)

text: Homo sapiens

text: SUM159 Cells ITGB4-Hi

text: SUM159 Cells ITGB4-High

text: YC12 p73 Bethyl SUM159 ITGB4-Hi


text: Syros Pharmaceuticals

text: live

characteristic: INSDC status

text: Generic

text: mammary carcinoma cells

text: p73 (Bethyl A300-126A)

text: Homo sapiens

text: SUM159 Cells ITGB4-Low

text: SUM159 Cells ITGB4-Low

text: YC17 (p73 Bethyl) SUM159 ITGB4-Low


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: Homo sapiens

text: SUM159 Cells ITGB4-Hi

text: SUM159 Cells ITGB4-High

text: YC16 SUM159 ITGB4-Hi Input


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: Homo sapiens

text: SUM159 Cells ITGB4-Low

text: SUM159 Cells ITGB4-Low

text: YC21 SUM159 ITGB4-Low Input


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: Transposase insertion

characteristic: dna extraction

text: Homo sapiens

text: SUM159 Cells ITGB4-High

text: SUM159 Cells ITGB4-High

text: MWC91.ATAC SUM159 CD104-high Rep2


text: Syros Pharmaceuticals

text: live

text: Generic

characteristic: NCBI submission model

text: mammary carcinoma cells

text: Transposase insertion

text: Homo sapiens

text: SUM159 Cells ITGB4-High

text: SUM159 Cells ITGB4-High

text: MWC90.ATAC SUM159 CD104-high Rep1


text: Syros Pharmaceuticals

text: live

text: Generic

characteristic: NCBI submission package

text: mammary carcinoma cells

text: Transposase insertion

text: Homo sapiens

text: SUM159 Cells ITGB4-Low

text: SUM159 Cells ITGB4-Low

text: MWC89.ATAC SUM159 CD104-low Rep2


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: Transposase insertion

text: Homo sapiens

text: SUM159 Cells ITGB4-Low

text: SUM159 Cells ITGB4-Low

text: MWC88.ATAC SUM159 CD104-low Rep1


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: H3K27ac (Abcam ab4729)

text: p73 Knock-out

characteristic: modification

text: Homo sapiens

text: SUM159 Cells ITGB4-High with p73 Knock-out

text: SUM159 Cells ITGB4-High

text: WB5_p73_KO_H3K27ac [SUM159(p73 KO)]


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: p63 Knock-out

text: Homo sapiens

characteristic: parental cell line

text: SUM159 Cells ITGB4-High with p63 Knock-out

text: SUM159 Cells ITGB4-High

text: WB4_p63_KO_Input [SUM159(p3 KO)]


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: H3K27ac (Abcam ab4729)

text: p63 Knock-out

text: Homo sapiens

text: SUM159 Cells ITGB4-High

characteristic: subline

text: WB3_p63_KO_H3K27ac [SUM159(p63 KO)]


characteristic: External Id

text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: Homo sapiens

text: SUM159 Cells ITGB4-Low

text: SUM159 Cells ITGB4-Low

text: MWC227 SUM159 CD104-low Input


text: Syros Pharmaceuticals

characteristic: INSDC center name

text: live

text: Generic

text: mammary carcinoma cells

text: H3K27ac (Abcam ab4729)

text: Homo sapiens

text: SUM159 Cells ITGB4-Low

text: SUM159 Cells ITGB4-Low

text: MWC226 SUM159 CD104-low H3K27Ac


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: H3K27ac (Abcam ab4729)

characteristic: chip antibody

text: p73 and p63 Knock-out

text: Homo sapiens

text: SUM159 Cells ITGB4-High with p73 and p63 Knock-out

text: SUM159 Cells ITGB4-High

text: WB7_dKO_H3K27ac [SUM159(p63 and p73 KO)]


text: Syros Pharmaceuticals

characteristic: INSDC first public

text: live

text: Generic

text: mammary carcinoma cells

text: Homo sapiens

text: SUM159 Cells ITGB4-High

text: SUM159 Cells ITGB4-High

text: MWC229 SUM159 CD104-high Input


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

characteristic: cell type

text: H3K27ac (Abcam ab4729)

text: Homo sapiens

text: SUM159 Cells ITGB4-High

text: SUM159 Cells ITGB4-High

text: MWC228 SUM159 CD104-high H3K27Ac


text: Syros Pharmaceuticals

characteristic: INSDC last update

text: live

text: Generic

text: mammary carcinoma cells

text: non-targeting control gRNA

text: Homo sapiens

text: SUM159 Cells ITGB4-High with non-targeting control gRNA

text: SUM159 Cells ITGB4-High

text: WB2_NT_Input [SUM159(Non-targeting control)]


text: Syros Pharmaceuticals

text: live

text: Generic

characteristic: SRA accession

text: mammary carcinoma cells

text: H3K27ac (Abcam ab4729)

text: non-targeting control gRNA

text: Homo sapiens

text: SUM159 Cells ITGB4-High

text: WB1_NT_H3K27ac [SUM159(Non-targeting control)]


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: p73 Knock-out

text: Homo sapiens

characteristic: organism

text: SUM159 Cells ITGB4-High

text: WB6_p73_KO_Input [SUM159(p73 KO)]


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: Homo sapiens

text: SUM159 Cells ITGB4-High with p73 and p63 Knock-out + exogenous p63 cDNA

text: SUM159 Cells ITGB4-High

text: WB16_dKO-p63_Input [SUM159(p63 and p73 KO) with exogenous p63]

characteristic: title


text: Syros Pharmaceuticals

characteristic: INSDC secondary accession

text: live

text: Generic

text: mammary carcinoma cells

text: H3K27ac (Abcam ab4729)

text: p73 and p63 Knock-out + exogenous p63 cDNA

text: Homo sapiens

text: SUM159 Cells ITGB4-High

text: WB15_dKO-p63_H3K27ac [SUM159(p63 and p73 KO) with exogenous p63]


text: Syros Pharmaceuticals

text: live

characteristic: INSDC status

text: Generic

text: mammary carcinoma cells

text: Homo sapiens

text: SUM159 Cells ITGB4-High with p73 and p63 Knock-out + exogenous empty expression vector

text: SUM159 Cells ITGB4-High

text: WB14_dKO-EV_Input [SUM159(p63 and p73 KO) with exogenous Empty vector]


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: H3K27ac (Abcam ab4729)

text: p73 and p63 Knock-out + exogenous empty expression vector

text: Homo sapiens

text: SUM159 Cells ITGB4-High

text: WB13_dKO-EV_H3K27ac [SUM159(p63 and p73 KO) with exogenous Empty vector]


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: p73 and p63 Knock-out

text: Homo sapiens

text: SUM159 Cells ITGB4-High

text: WB8_dKO_Input [SUM159(p63 and p73 KO)]


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: Homo sapiens

text: SUM159 Cells ITGB4-High with p73 and p63 Knock-out + exogenous p63/p73 cDNA

text: SUM159 Cells ITGB4-High

text: WB20_dKO-dual_Input [SUM159(p63 and p73 KO) with exogenous p63/p73]


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: H3K27ac (Abcam ab4729)

text: p73 and p63 Knock-out + exogenous p63/p73 cDNA

text: Homo sapiens

text: SUM159 Cells ITGB4-High

text: WB19_dKO-dual_H3K27ac [SUM159(p63 and p73 KO) with exogenous p63/p73]


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: Homo sapiens

text: SUM159 Cells ITGB4-High with p73 and p63 Knock-out + exogenous p73 cDNA

text: SUM159 Cells ITGB4-High

text: WB18_dKO-p73_Input [SUM159(p63 and p73 KO) with exogenous p73]


text: Syros Pharmaceuticals

text: live

text: Generic

text: mammary carcinoma cells

text: H3K27ac (Abcam ab4729)

text: p73 and p63 Knock-out + exogenous p73 cDNA

text: Homo sapiens

text: SUM159 Cells ITGB4-High

text: WB17_dKO-p73_H3K27ac [SUM159(p63 and p73 KO) with exogenous p73]


text: Applied Bioinformatics Core, Physiology & Biophysics, Weill Cornell Medicine

text: live

text: Generic

text: WT PIK3CA

characteristic: antigen type

text: Homo sapiens

text: T cells

text: TCR sequencing of T cells from patient 21LT2 stimulated with WT PIK3CA


text: live

text: Generic

characteristic: NCBI submission model

text: PIK3CA (H1047L)

text: Homo sapiens

text: T cells

text: scRNA-seq sequencing of T cells from patient 0606T1 stimulated with PIK3CA(H1047L)


text: live

text: Generic

characteristic: NCBI submission package

text: PIK3CA (H1047L)

text: Homo sapiens

text: T cells

text: TCR sequencing of T cells from patient 0606T1 stimulated with PIK3CA(H1047L)


text: live

text: Generic

text: WT PIK3CA

text: Homo sapiens

text: T cells

text: scRNA-seq sequencing of T cells from patient 0606T1 stimulated with WT PIK3CA


text: live

text: Generic

text: WT PIK3CA

text: Homo sapiens

text: T cells

text: TCR sequencing of T cells from patient 0606T1 stimulated with WT PIK3CA


text: live

text: Generic

text: PIK3CA (H1047L)

text: Homo sapiens

text: T cells

text: scRNA-seq sequencing of T cells from patient 21LT2 stimulated with PIK3CA(H1047L)


text: live

text: Generic

text: PIK3CA (H1047L)

text: Homo sapiens

text: T cells

text: TCR sequencing of T cells from patient 21LT2 stimulated with PIK3CA(H1047L)


text: live

text: Generic

text: WT PIK3CA

text: Homo sapiens

text: T cells

text: scRNA-seq sequencing of T cells from patient 21LT2 stimulated with WT PIK3CA


text: Kaplan Lab, Biomedical Engineering, Tufts University

text: live

text: Generic

text: hiPSC-derived dopaminergic neurons

text: Three dimensional (3D)

characteristic: culture condition

characteristic: experiment number

text: LRRK2 G2019S

characteristic: genotype

text: Homo sapiens

text: dopaminergic neurons


characteristic: External Id

text: live

text: Generic

text: hiPSC-derived dopaminergic neurons

text: Two dimensional (2D)

text: LRRK2 G2019S

text: Homo sapiens

text: dopaminergic neurons


characteristic: INSDC center name

text: live

text: Generic

text: hiPSC-derived dopaminergic neurons

text: Two dimensional (2D)

text: Wild Type

text: Homo sapiens

text: dopaminergic neurons


text: Physical Medicine and Rehabilitation, Mayo Clinic

text: live

text: Generic

text: 24 month

characteristic: age

text: Mononuclear cells mix

text: Mus musculus

text: Skeletal muscle

characteristic: strain

text: Old Muscle-scRNAseq-rep3


characteristic: INSDC first public

text: live

text: Generic

text: 24 month

text: Mononuclear cells mix

characteristic: cell type

text: Mus musculus

text: Skeletal muscle

text: Old Muscle-scRNAseq-rep2


characteristic: INSDC last update

text: live

text: Generic

characteristic: SRA accession

text: 24 month

text: Mononuclear cells mix

text: Mus musculus

text: Skeletal muscle

text: Old Muscle-scRNAseq-rep1


text: live

text: Generic

text: 6 month

text: Mononuclear cells mix

text: Mus musculus

characteristic: organism

text: Skeletal muscle

text: Young Muscle-scRNAseq-rep3

characteristic: title


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 6 month

text: Mononuclear cells mix

text: Mus musculus

text: Skeletal muscle

text: Young Muscle-scRNAseq-rep2


text: live

text: Generic

characteristic: NCBI submission model

text: 6 month

text: Mononuclear cells mix

text: Mus musculus

text: Skeletal muscle

text: Young Muscle-scRNAseq-rep1


text: live

text: Generic

characteristic: NCBI submission package

text: hiPSC-derived dopaminergic neurons

text: Three dimensional (3D)

text: Wild Type

text: Homo sapiens

text: dopaminergic neurons


text: Department of Nuclear Medicine, Seoul National University Hospital

text: live

text: Generic

text: Homo sapiens

characteristic: patient number

text: Lung

text: Normal lung

characteristic: tissue


text: The Walter and Eliza Hall Institute of Medical Research

text: live

text: Generic

characteristic: cell line

text: Homo sapiens

characteristic: replicate

text: Human lung cancer cell line HCC827

text: Human lung cancer cell line