characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Embryoid Bodies (EB)

text: Dnmt3b -/- (3BKO)

text: Mus musculus

characteristic: organism

text: Mouse Embryoid Bodies

characteristic: title


status: PUBLIC

text: Functional Genomics, Epigenomics - S. Oliviero, Life Sciences and Systems Biology, University of Turin

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

tag: attribute

characteristic: Stage

characteristic: batch

text: Embryoid Bodies (EB)

characteristic: cell type

text: Dnmt3a -/- (3AKO)

characteristic: genotype

text: Mus musculus

text: Mouse Embryoid Bodies

characteristic: strain


text: live

text: Generic

text: Embryoid Bodies (EB)

text: WT

text: Mus musculus

text: Mouse Embryoid Bodies


text: live

text: Generic

text: ME T48h

text: EpiSC derived ME progenitors

characteristic: clone

text: Dnmt3b -/- (3BKO)

text: Mus musculus

text: Mouse Meso-Endodermal Progenitors

characteristic: strain background


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: ME T24h

text: EpiSC derived ME progenitors

text: WT

text: Wild type (WT)

text: Mus musculus

text: Mouse Meso-Endodermal Progenitors


characteristic: INSDC first public

text: live

characteristic: INSDC status

text: Generic

text: ME T24h

text: EpiSC derived ME progenitors

text: Dnmt3b -/- (3BKO)

text: Mus musculus

text: Mouse Meso-Endodermal Progenitors


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: ESC

text: WT

text: Wild type (WT)

text: Mus musculus

text: Mouse Embryonic Stem Cells


text: live

text: Generic

text: ESC

text: Dnmt3b -/- (3BKO)

text: Mus musculus

characteristic: organism

text: Mouse Embryonic Stem Cells

characteristic: title


characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: EpiSC

text: ES-E14 derived EpiSC

text: WT

text: Wild type (WT)

text: Mus musculus

text: Mouse Epiblast Stem Cells


text: live

text: Generic

characteristic: SRA accession

text: EpiSC

characteristic: Stage

text: ES-E14 derived EpiSC

text: Dnmt3b -/- (3BKO)

text: Mus musculus

text: Mouse Epiblast Stem Cells


text: live

text: Generic

text: EpiSC

text: ES-E14 derived EpiSC

characteristic: cell type

text: Dnmt3b -/-

text: Mus musculus

text: Mouse Epiblast Stem Cells


text: live

text: Generic

text: EpiSC

text: ES-E14 derived EpiSC

text: WT

text: Wild type (WT)

characteristic: genotype

text: Mus musculus

text: Mouse Epiblast Stem Cells


text: live

text: Generic

text: ESC

text: Dnmt3b -/-

text: Mus musculus

text: Mouse Embryonic Stem Cells

characteristic: strain


text: live

text: Generic

text: ESC

text: WT

characteristic: clone

text: Wild type (WT)

text: Mus musculus

text: Mouse Embryonic Stem Cells


text: live

text: Generic

text: ME T48h

text: EpiSC derived ME progenitors

text: WT

text: Wild type (WT)

text: Mus musculus

text: Mouse Meso-Endodermal Progenitors

characteristic: strain background


characteristic: External Id

text: live

text: Generic

text: ME T48h

text: Input

characteristic: antibody

text: EpiSC derived ME progenitors

text: Wild type (WT)

text: Mus musculus

text: Mouse Meso-Endodermal Progenitors


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: ME T48h

text: EpiSC derived ME progenitors

text: Wild type (WT)

text: Mus musculus

text: Mouse Meso-Endodermal Progenitors


text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: EpiSC

text: Input

text: ES-E14 derived EpiSC

text: Wild type (WT)

text: Mus musculus

text: Mouse Epiblast Stem Cells


text: live

text: Generic

characteristic: NCBI submission package

text: EpiSC

text: ES-E14 derived EpiSC

text: Wild type (WT)

text: Mus musculus

characteristic: organism

text: Mouse Epiblast Stem Cells


characteristic: INSDC last update

text: live

text: Generic

characteristic: batch

text: Embryoid Bodies (EB)

text: WT

text: Mus musculus

text: Mouse Embryoid Bodies

characteristic: title


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

characteristic: Stage

text: Embryoid Bodies (EB)

text: Dnmt3a -/- (3AKO)

text: Mus musculus

text: Mouse Embryoid Bodies


text: live

text: Generic

text: Embryoid Bodies (EB)

characteristic: cell type

text: Dnmt3b -/- (3BKO)

characteristic: genotype

text: Mus musculus

text: Mouse Embryoid Bodies

characteristic: strain


text: yes

characteristic: Control

characteristic: External Id

characteristic: Extraction

text: MPI for Evolutionary Biology

text: live

characteristic: Library

text: RNA

characteristic: Molecule

characteristic: Mouse

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: Intestinal microbiota

text: Cecum

text: France: Espelette

text: Mus musculus domesticus

characteristic: host

text: not collected

text: mouse gut metagenome

characteristic: sample

text: MIMARKS Survey related sample from mouse gut metagenome


text: yes

text: MPI for Evolutionary Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: DNA

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission model

text: MIMARKS.survey

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Intestinal microbiota

text: Cecum

text: France: Espelette

text: Mus musculus domesticus

text: not collected

text: mouse gut metagenome

characteristic: organism


text: no

text: MPI for Evolutionary Biology

characteristic: INSDC secondary accession

text: live

text: DNA

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

characteristic: SRA accession

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Intestinal microbiota

text: Cecum

text: France: Espelette

text: Mus musculus domesticus

text: not collected

text: mouse gut metagenome

characteristic: title


text: no

characteristic: Control

characteristic: External Id

characteristic: Extraction

text: MPI for Evolutionary Biology

text: live

text: RNA

text: MIGS/MIMS/MIMARKS.host-associated

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: Intestinal microbiota

text: Cecum

text: France: Espelette

text: Mus musculus domesticus

text: not collected

text: mouse gut metagenome


text: Penn State University

text: live

text: Metagenome or environmental

text: Apple Packing House

text: Attached biomass grown from apple packinghouse sample

text: food production metagenome

text: Metagenome from attached biomass grown from apple packinghouse sample


text: Ningbo University

text: live

text: Microbe, viral or environmental

text: China: Ningbo

text: not collected

text: Aliiroseovarius sp. Z3

text: pure culture

characteristic: strain

text: Microbe sample from Aliiroseovarius sp. Z3


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: GRU

text: Blood

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from Blood of a human male participant in the dbGaP study PDAC Prognosis Biomarkers in Genomic and Transcriptomic Molecular Data


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

text: Pancreas

text: GRU

text: pancreas-adenocarcinoma ductal type

text: Yes

text: Homo sapiens

characteristic: organism

text: male

text: Tumor vs. Matched-Normal

text: Tumor RNA sample from Pancreas of a human male participant in the dbGaP study PDAC Prognosis Biomarkers in Genomic and Transcriptomic Molecular Data

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Blood

characteristic: body site

text: GRU

text: Blood

characteristic: histological type

text: No

characteristic: is tumor

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

text: Non-tumor DNA sample from Blood of a human female participant in the dbGaP study PDAC Prognosis Biomarkers in Genomic and Transcriptomic Molecular Data


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Pancreas

text: GRU

text: pancreas-adenocarcinoma ductal type

text: Yes

text: Homo sapiens

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

characteristic: study design

characteristic: study name

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Tumor DNA sample from Pancreas of a human male participant in the dbGaP study PDAC Prognosis Biomarkers in Genomic and Transcriptomic Molecular Data


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: Blood

text: GRU

text: Blood

text: No

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

text: PDAC Prognosis Biomarkers in Genomic and Transcriptomic Molecular Data


characteristic: External Id

text: dbGaP

text: live

text: Generic

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Pancreas

characteristic: body site

text: GRU

text: pancreas-adenocarcinoma ductal type

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Tumor vs. Matched-Normal

text: Tumor RNA sample from Pancreas of a human female participant in the dbGaP study PDAC Prognosis Biomarkers in Genomic and Transcriptomic Molecular Data

characteristic: title


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

text: Pancreas

text: GRU

text: pancreas-adenocarcinoma ductal type

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Tumor vs. Matched-Normal

characteristic: study design

characteristic: study name

characteristic: submitted sample id

text: Tumor DNA sample from Pancreas of a human female participant in the dbGaP study PDAC Prognosis Biomarkers in Genomic and Transcriptomic Molecular Data


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Blood

text: GRU

text: Blood

text: No

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

characteristic: submitted subject id

characteristic: submitter handle


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: Pancreas

characteristic: body site

text: GRU

text: pancreas-adenocarcinoma ductal type

text: Yes

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: RNA

text: Pancreas

text: GRU

text: pancreas-adenocarcinoma-other subtype

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: male

characteristic: sex

text: Tumor vs. Matched-Normal

characteristic: study design

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: RNA

text: Pancreas

text: GRU

text: pancreas-adenocarcinoma ductal type

text: Yes

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study name

characteristic: submitted sample id


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

text: Pancreas

text: GRU

text: pancreas-adenocarcinoma-other subtype

text: Yes

text: Homo sapiens

text: female

text: Tumor vs. Matched-Normal

characteristic: submitted subject id

characteristic: submitter handle


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

text: Pancreas

characteristic: body site

text: GRU

text: pancreas-adenocarcinoma-other subtype

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

characteristic: organism

text: female

characteristic: sex

text: Tumor vs. Matched-Normal


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: DNA

text: Pancreas

text: GRU

text: pancreas-adenocarcinoma-other subtype

text: Yes

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study design

characteristic: title


characteristic: External Id

text: dbGaP

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: Pancreas

text: GRU

text: pancreas-colloid (mucinous non-cystic) carcinoma

text: Yes

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: study name

characteristic: submitted sample id


text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: RNA

characteristic: biospecimen repository sample id

text: Pancreas

characteristic: body site

text: GRU

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: male

text: Tumor vs. Matched-Normal

characteristic: submitted subject id

characteristic: submitter handle


text: Murdoch Children's Research Institute

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: Monocyte

characteristic: cell type

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Adult Human Peripheral Blood

characteristic: tissue

text: BCG Denmark exposed for 24 hours, culture for 5 days to macrophage, then LPS exposed for 4 hours


characteristic: External Id

text: Murdoch Children's Research Institute

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

characteristic: title

text: LPS exposed 24 hours, culture for 5 days to macrophage, then LPS exposed for 4 hours


text: Murdoch Children's Research Institute

characteristic: INSDC center name

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: RPMI media only for 6 days to macrophage, then LPS exposed for 4 hours


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: BCG Bulgaria exposed for 24 hours, culture for 5 days to macrophage


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: BCG Denmark exposed for 24 hours, culture for 5 days to macrophage


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: RPMI media only for 6 days to macrophage


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: BCG Bulgaria exposed, collected at 24 hours post exposure


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: BCG Denmark exposed, collected at 24 hours post exposure


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: LPS exposed, collected at 24 hours post exposure.


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: RPMI media only, collected at 24 hours post culture


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: BCG Bulgaria exposed for 24 hours, culture for 5 days to macrophage, then LPS exposed for 4 hours


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: Baseline monocyte, attached to dish for 1 hour


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: LPS exposed 24 hours, culture for 5 days to macrophage


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: BCG Denmark exposed, collected at 4 hours post exposure


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: LPS exposed, collected at 4 hours post exposure.


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: RPMI media only, collected at 4 hours post culture


text: Murdoch Children's Research Institute

text: live

text: Generic

text: Monocyte

text: Homo sapiens

text: Adult Human Peripheral Blood

text: BCG Bulgaria exposed, collected at 4 hours post exposure


text: University of Luxembourg

text: live

text: Generic

text: C

characteristic: amyloid

characteristic: apoe

characteristic: braak

characteristic: braak lb

text: Non-demented control

characteristic: disease state

text: female

characteristic: gender

text: Homo sapiens

characteristic: ph-csf

text: Post-mortem substantia nigra

text: Substantia nigra


text: University of Luxembourg

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: A

text: Non-demented control

text: female

text: Homo sapiens

text: Post-mortem substantia nigra

text: Substantia nigra


characteristic: External Id

text: University of Luxembourg

text: live

text: Generic

text: Non-demented control

text: female

text: Homo sapiens

characteristic: organism

text: Post-mortem substantia nigra

text: Substantia nigra

characteristic: tissue


text: University of Luxembourg

text: live

text: Generic

characteristic: NCBI submission package

characteristic: SRA accession

text: Non-demented control

text: male

text: Homo sapiens

text: Post-mortem substantia nigra

text: Substantia nigra

characteristic: title


text: University of Luxembourg

characteristic: INSDC center name

text: live

text: Generic

text: Parkinson's disease

text: male

text: Homo sapiens

text: Post-mortem substantia nigra

text: Substantia nigra


text: University of Luxembourg

text: live

text: Generic

characteristic: braak

text: Parkinson's disease

text: female

text: Homo sapiens

text: Post-mortem substantia nigra

text: Substantia nigra


text: University of Luxembourg

text: live

text: Generic

text: O

characteristic: amyloid

characteristic: braak lb

text: Parkinson's disease

text: female

text: Homo sapiens

text: Post-mortem substantia nigra

text: Substantia nigra


text: University of Luxembourg

text: live

text: Generic

text: O

text: Parkinson's disease

characteristic: disease state

text: male

characteristic: gender

text: Homo sapiens

text: Post-mortem substantia nigra

text: Substantia nigra


text: University of Luxembourg

characteristic: INSDC first public

text: live

text: Generic

text: Non-demented control

text: male

text: Homo sapiens

characteristic: ph-csf

text: Post-mortem substantia nigra

text: Substantia nigra


text: University of Luxembourg

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: Parkinson's disease

text: male

text: Homo sapiens

text: Post-mortem substantia nigra

text: Substantia nigra


text: University of Luxembourg

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: B

text: Parkinson's disease

text: male

text: Homo sapiens

text: Post-mortem substantia nigra

text: Substantia nigra


characteristic: External Id

text: University of Luxembourg

text: live

text: Generic

text: A

text: Parkinson's disease

text: male

text: Homo sapiens

characteristic: organism

text: Post-mortem substantia nigra

text: Substantia nigra


text: University of Luxembourg

text: live

text: Generic

characteristic: NCBI submission package

text: A

characteristic: apoe

text: Non-demented control

text: male

text: Homo sapiens

text: Post-mortem substantia nigra

text: Substantia nigra

characteristic: tissue


text: University of Luxembourg

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: C

text: Non-demented control

text: male

text: Homo sapiens

text: Post-mortem substantia nigra

text: Substantia nigra

characteristic: title


text: University of Luxembourg

text: live

text: Generic

text: O

characteristic: amyloid

characteristic: braak

characteristic: braak lb

text: Non-demented control

text: male

text: Homo sapiens

text: Post-mortem substantia nigra

text: Substantia nigra


text: Ecker lab, Genomic Analysis Laboratory, HHMI-Salk-Institute

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM5142774 is currently private and is scheduled to be released on Feb 01, 2023.


text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM5142798 is currently private and is scheduled to be released on Feb 01, 2023.


text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM5142860 is currently private and is scheduled to be released on Feb 01, 2023.


text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM5142886 is currently private and is scheduled to be released on Feb 01, 2023.


text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM5142664 is currently private and is scheduled to be released on Feb 01, 2023.


text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM5142978 is currently private and is scheduled to be released on Feb 01, 2023.


text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM5143025 is currently private and is scheduled to be released on Feb 01, 2023.


text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM5143562 is currently private and is scheduled to be released on Feb 01, 2023.


text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM5143486 is currently private and is scheduled to be released on Feb 01, 2023.


text: live

text: Generic

text: Homo sapiens

text: GEO accession GSM5143511 is currently private and is scheduled to be released on Feb 01, 2023.


text: University of Bern

text: live

text: Plant

text: adult

characteristic: age

text: Group Cris Kuhlemeier, Institute for plant sciences, University of Bern, Altenbergrain 21, 3013 Bern

text: Mathieu Hanemian

text: Switzerland:Bern, Institute of Plant Science

text: P. axillaris N X P. exserta F2, necrotic bulk

characteristic: isolate

text: Petunia axillaris x Petunia exserta

text: Necrotic leaves

characteristic: phenotype

text: Leaf

text: P. axillaris X P. exserta F2 bulked leaf samples of individuals with necrotic phenotype


text: University of Bern

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Plant

text: adult

text: Mathieu Hanemian

text: P. axillaris N X P. exserta F2, healthy bulk

text: Petunia axillaris x Petunia exserta

text: Healthy leaves

text: Leaf

text: P. axillaris X P. exserta F2 bulked leaf samples of individuals without necrotic phenotype


characteristic: External Id

text: University of Bern

text: live

text: Plant

characteristic: NCBI submission model

text: adult

text: Mathieu Hanemian

text: P. exserta X P. axillaris N F2, necrotic bulk

text: Petunia axillaris x Petunia exserta

characteristic: organism

text: Necrotic leaves

text: Leaf

text: P. exserta X P. axillaris F2 bulked leaf samples of individuals with necrotic phenotype


text: University of Bern

text: live

text: Plant

characteristic: NCBI submission package

text: adult

text: Mathieu Hanemian

text: P. exserta X P. axillaris N F2, healthy bulk

text: Petunia axillaris x Petunia exserta

text: Healthy leaves

text: Leaf

characteristic: tissue

text: P. exserta X P. axillaris F2 bulked leaf samples of individuals without necrotic phenotype


text: Istituto Zooprofilattico Sperimentale del Lazio e della Toscana M. Aleandri

characteristic: INSDC center name

text: live

text: Pathogen.cl

characteristic: SRA accession

text: IZSLT

characteristic: description

text: Italy:Lazio

text: Homo sapiens

characteristic: host

text: Listeriosis

text: human

text: blood

text: Listeria monocytogenes

characteristic: serotype

characteristic: strain

text: Pathogen: clinical or host-associated sample from Listeria monocytogenes


characteristic: INSDC first public

text: live

text: Pathogen.cl

text: IZSLT

text: Italy:Lazio

text: Environmental

text: Listeriosis

text: environmental

text: slicer

text: Listeria monocytogenes

characteristic: title


Dalbergia sissoo

text: Forest Research Institute Dehradun

text: live

text: MIGS.eu

text: MIGS/MIMS/MIMARKS.plant-associated

text: Keywords: GSC:MIxS;MIGS:6.0

text: India: Uttrakhand, Dehradun

text: 30.344571 N 78.013288 E

text: Dalbergia sissoo

text: Dalbergia sissoo


text: University of Duisburg-Essen

text: live

text: Microbe, viral or environmental

text: Candidatus Altiarchaeum hamiconexum

characteristic: Taxonomy

characteristic: collection date

text: This BioSample is a metagenomic assembly obtained from the groundwater metagenome BioSample: SAMN14733007

characteristic: derived-from

characteristic: environmental sample

text: Germany: Isling

characteristic: geo loc name

characteristic: isolate

text: groundwater filtrate <0.1 micrometer

characteristic: isolation source

text: 48.985844 N 12.127194 E

characteristic: lat lon

text: groundwater metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Candidatus Altarchaeum hamiconexum

text: metagenomic assembly

characteristic: sample-type

text: Microbe sample from Candidatus Altarchaeum hamiconexum


Dendrocalamus longispathus

characteristic: External Id

text: Forest Research Institute Dehradun

characteristic: INSDC center name

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: Dr. R K Meena

text: India: Uttarakhand, dehradun

text: 30.347024 N 77.999791 E

text: Dendrocalamus longispathus

characteristic: organism

text: Leaf

text: leaf

characteristic: tissue

text: dendrocalamus longispathus


Tsuga dumosa

text: Forest Research Institute Dehradun

characteristic: INSDC first public

text: live

text: Plant

text: Dr. R K Meena

text: India: Uttarakhand, dharchula

text: 29.982791 N 80.654414 E

text: Tsuga dumosa

text: leaf

text: Tsuga dumosa

characteristic: title


text: University of Duisburg-Essen

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: This BioSample is a metagenomic assembly obtained from the publicly available groundwater metagenome BioSample: SAMN04999997

characteristic: derived-from

characteristic: environmental sample

text: Japan: Horonobe URL

characteristic: geo loc name

characteristic: isolate

text: deep subsurface groundwater 250 m

characteristic: isolation source

text: 45.045278 N 141.859444 E

text: groundwater metagenome

text: Candidatus Altarchaeum sp. HURL_250

text: metagenomic assembly

text: Microbe sample from Candidatus Altarchaeum sp. HURL_250


characteristic: External Id

text: University of Duisburg-Essen

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: This BioSample is a metagenomic assembly obtained from the publicly available groundwater metagenome BioSample: SAMN04999996

text: Japan: Horonobe URL

text: deep subsurface groundwater 140 m

text: 45.045278 N 141.859444 E

characteristic: lat lon

text: groundwater metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Candidatus Altarchaeum sp.

text: metagenomic assembly

characteristic: sample-type

text: Microbe sample from Candidatus Altarchaeum sp.


text: University of Duisburg-Essen

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: This BioSample is a metagenomic assembly obtained from the groundwater metagenome BioSample: SAMN14680028

text: Germany:Andernach

text: groundwater from shale-hosted aquifer

text: 50.448488 N 7.375355 E

text: groundwater metagenome

text: Candidatus Altarchaeum sp.

text: metagenomic assembly


text: University of Duisburg-Essen

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: This BioSample is a metagenomic assembly obtained from the groundwater metagenome BioSample: SAMN14680029

text: Germany:Andernach

text: groundwater from shale-hosted aquifer

text: 50.448488 N 7.375355 E

text: groundwater metagenome

text: Candidatus Altarchaeum sp.

characteristic: organism

text: metagenomic assembly

characteristic: title


text: University of Duisburg-Essen

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: This BioSample is a metagenomic assembly obtained from the groundwater metagenome BioSample: SAMN14680030

characteristic: derived-from

characteristic: environmental sample

text: Germany:Andernach

text: groundwater from shale-hosted aquifer

text: 50.448488 N 7.375355 E

text: groundwater metagenome

text: Candidatus Altarchaeum sp.

text: metagenomic assembly


Rhododendron campanulatum

text: Forest Research Institute Dehradun

characteristic: INSDC secondary accession

text: live

text: Plant

characteristic: SRA accession

text: Dr. R K Meena

text: India: Uttarakhand, tungnath

text: leaf

text: 30.490411 N 79.207056 E

text: Rhododendron campanulatum

text: leaf

characteristic: tissue

text: Rhododendron campanulatum


characteristic: External Id

text: Northwest Agriculture and Forestry University

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: China: Yangling

text: Panicum miliaceum L.

characteristic: host

text: reator sample

text: 34 N 107 E

text: leaf metagenome


text: University of Duisburg-Essen

text: live

text: Microbe, viral or environmental

text: This BioSample is a metagenomic assembly obtained from the publicly available microbial mat metagenome BioSample: SAMN05661201

text: USA: Alpena, MI

characteristic: geo loc name

characteristic: isolate

text: microbial mat growing in sulfidic groundwater-fed fountain near public library

characteristic: isolation source

text: 45.06245 N 83.4311999 W

characteristic: lat lon

text: microbial mat metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Candidatus Altarchaeum sp.

text: metagenomic assembly

characteristic: sample-type


text: MPI Molecular Genetics

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Day 2

characteristic: differentiation stage

text: Mus musculus

characteristic: organism

text: in vitro differentiated ES cells

characteristic: strain

text: ChIP P-Smad1/5/9 Day2

characteristic: title


characteristic: External Id

text: MPI Molecular Genetics

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA WT Day3 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA WT Day3 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA WT Day2 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA WT Day2 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 1

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA WT Day1 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 1

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA WT Day1 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: mESC

text: Mus musculus

text: ES cells

text: RNA WT ES rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA Eomes T dKO Day2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA T KO Day3


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA T KO Day2


text: MPI Molecular Genetics

text: live

text: Generic

text: mESC

text: Mus musculus

text: ES cells

text: RNA WT ES rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: ChIP T Day3


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: ChIP Eomes Day3


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: ChIP Eomes Day2


text: MPI Molecular Genetics

text: live

text: Generic

text: mESC

text: Mus musculus

text: ES cells

text: ATAC WT ES rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA Smad4 KO Day2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA Smad4 WT Day2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 1

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA Smad4 KO Day1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 1

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA Smad4 WT Day1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA Eomes T dKO Day3


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA Eomes KO Day3


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: RNA Eomes KO Day2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Smad4 KO Day2 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Smad4 KO Day2 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Smad4 WT Day2 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Smad4 WT Day2 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Eomes T dKO Day3 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Eomes T dKO Day3 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Eomes T dKO Day2 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Eomes T dKO Day2 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC T KO Day3 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC T KO Day3 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Eomes KO Day2 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Eomes KO Day2 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC WT Day3 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 3

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC WT Day3 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC WT Day2 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 2

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC WT Day2 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 1

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC WT Day1 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 1

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC WT Day1 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: mESC

text: Mus musculus

text: ES cells

text: ATAC WT ES rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 1

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Smad4 KO Day1 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 1

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Smad4 KO Day1 rep1


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 1

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Smad4 WT Day1 rep2


text: MPI Molecular Genetics

text: live

text: Generic

text: Day 1

text: Mus musculus

text: in vitro differentiated ES cells

text: ATAC Smad4 WT Day1 rep1


1 Mock DE-MSC, P5

text: Univeristy of Macau

text: live

text: Human

characteristic: age

text: Guokai Chen

text: H9 hESC

text: Mock DE-MSC

text: WiCell

characteristic: isolate

text: XX

characteristic: karyotype

text: Homo sapiens

text: Mock DE-MSC

characteristic: phenotype

text: cell culture

text: female

characteristic: sex

text: blastocyst

characteristic: tissue

text: Mock DE-MSC-P5

characteristic: treatment


2 Mock DE-MSC, P10

text: Univeristy of Macau

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Human

characteristic: NCBI submission model

text: Guokai Chen

text: H9 hESC

text: Mock DE-MSC

text: WiCell

text: XX

text: Homo sapiens

text: Mock DE-MSC

text: cell culture

text: female

text: blastocyst

text: Mock DE-MSC-P10


3 CHIR DE-MSC, P5

text: Univeristy of Macau

text: live

text: Human

characteristic: NCBI submission package

text: Guokai Chen

text: H9 hESC

text: CHIR DE-MSC

text: WiCell

text: XX

text: Homo sapiens

characteristic: organism

text: CHIR DE-MSC

text: cell culture

text: female

text: blastocyst

text: CHIR DE-MSC-P5


4 CHIR DE-MSC, P10

characteristic: External Id

text: Univeristy of Macau

text: live

text: Human

text: Guokai Chen

text: H9 hESC

text: CHIR DE-MSC

text: WiCell

text: XX

text: Homo sapiens

text: CHIR DE-MSC

text: cell culture

text: female

text: blastocyst

characteristic: title

text: CHIR DE-MSC-P10


5 CHIR/SB DE-MSC, P5

text: Univeristy of Macau

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Human

text: Guokai Chen

text: H9 hESC

text: CHIR/SB DE-MSC

text: WiCell

text: XX

text: Homo sapiens

text: CHIR/SB DE-MSC

text: cell culture

text: female

text: blastocyst

text: CHIR/SB DE-MSC-P5


6 CHIR/SB DE-MSC, P10

text: Univeristy of Macau

text: live

text: Human

characteristic: SRA accession

characteristic: age

text: Guokai Chen

text: H9 hESC

text: CHIR/SB DE-MSC

text: WiCell

text: XX

text: Homo sapiens

text: CHIR/SB DE-MSC

text: cell culture

text: female

text: blastocyst

text: CHIR/SB DE-MSC-P10


7 BMP4 DE-MSC, P5

text: Univeristy of Macau

text: live

text: Human

text: Guokai Chen

text: H9 hESC

text: BMP4 DE-MSC

text: WiCell

characteristic: isolate

text: XX

characteristic: karyotype

text: Homo sapiens

text: BMP4 DE-MSC

text: cell culture

text: female

text: blastocyst

text: BMP4 DE-MSC-P5


8 BMP4 DE-MSC, P10

text: Univeristy of Macau

text: live

text: Human

text: Guokai Chen

text: H9 hESC

text: BMP4 DE-MSC

text: WiCell

text: XX

text: Homo sapiens

text: BMP4 DE-MSC

characteristic: phenotype

text: cell culture

text: female

characteristic: sex

text: blastocyst

text: BMP4 DE-MSC-P10


9 BMP4/SB DE-MSC, P5

text: Univeristy of Macau

text: live

text: Human

text: Guokai Chen

text: H9 hESC

text: BMP4/SB DE-MSC

text: WiCell

text: XX

text: Homo sapiens

text: BMP4/SB DE-MSC

text: cell culture

text: female

text: blastocyst

characteristic: tissue

text: BMP4/SB DE-MSC-P5

characteristic: treatment


10 BMP4/SB DE-MSC, P10

text: Univeristy of Macau

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Human

text: Guokai Chen

text: H9 hESC

text: BMP4/SB DE-MSC

text: WiCell

text: XX

text: Homo sapiens

text: BMP4/SB DE-MSC

text: cell culture

text: female

text: blastocyst

text: 1BMP4/SB DE-MSC-P10


11 Mesoderm-MSC, P4

text: Univeristy of Macau

text: live

characteristic: INSDC status

text: Human

characteristic: NCBI submission model

text: Guokai Chen

text: H9 hESC

text: Mesoderm-MSC

text: WiCell

text: XX

text: Homo sapiens

text: Mesoderm-MSC

text: cell culture

text: female

text: blastocyst


12 Mesoderm-MSC, P5

text: Univeristy of Macau

text: live

text: Human

characteristic: NCBI submission package

text: Guokai Chen

text: H9 hESC

text: Mesoderm-MSC

text: WiCell

text: XX

text: Homo sapiens

characteristic: organism

text: Mesoderm-MSC

text: cell culture

text: female

text: blastocyst


13 Neural crest-MSC, P4

characteristic: External Id

text: Univeristy of Macau

text: live

text: Human

text: Guokai Chen

text: H9 hESC

text: Neural crest-MSC

text: WiCell

text: XX

text: Homo sapiens

text: Neural crest-MSC

text: cell culture

text: female

text: blastocyst

characteristic: title

text: Neural crest-MSC-P4


14 Neural crest-MSC, P5

text: Univeristy of Macau

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Human

text: Guokai Chen

text: H9 hESC

text: Neural crest-MSC

text: WiCell

text: XX

text: Homo sapiens

text: Neural crest-MSC

text: cell culture

text: female

text: blastocyst

text: Neural crest-MSC-P5


15 Trophoblast-MSC, P4

text: Univeristy of Macau

text: live

text: Human

characteristic: SRA accession

characteristic: age

text: Guokai Chen

text: H9 hESC

text: Trophoblast-MSC

text: WiCell

text: XX

text: Homo sapiens

text: Trophoblast-MSC

text: cell culture

text: female

text: blastocyst


16 Trophoblast-MSC, P5

text: Univeristy of Macau

text: live

text: Human

text: Guokai Chen

text: H9 hESC

text: Trophoblast-MSC

text: WiCell

characteristic: isolate

text: XX

characteristic: karyotype

text: Homo sapiens

text: Trophoblast-MSC

text: cell culture

text: female

text: blastocyst


17 human liver-MSC, P4

text: Univeristy of Macau

text: live

text: Human

text: Guokai Chen

text: human liver-MSC

text: patient

text: XY

text: Homo sapiens

text: human liver-MSC

characteristic: phenotype

text: cell culture

text: male

characteristic: sex

text: liver

text: human liver-MSC-P4


18 human liver-MSC, P10

text: Univeristy of Macau

text: live

text: Human

text: Guokai Chen

text: human liver-MSC

text: patient

text: XY

text: Homo sapiens

text: human liver-MSC

text: cell culture

text: male

text: liver

characteristic: tissue

text: human liver-MSC- P10

characteristic: treatment


19 human colon-MSC, P6

text: Univeristy of Macau

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Human

text: Guokai Chen

text: human colon-MSC

text: patient

text: XY

text: Homo sapiens

text: human colon-MSC

text: cell culture

text: male

text: colon

text: human colon-MSC-P6


20 human colon-MSC, P10

text: Univeristy of Macau

text: live

characteristic: INSDC status

text: Human

characteristic: NCBI submission model

text: Guokai Chen

text: human colon-MSC

text: patient

text: XY

text: Homo sapiens

text: human colon-MSC

text: cell culture

text: male

text: colon

text: human colon-MSC-P10


21 human breast-MSC, P4

text: Univeristy of Macau

text: live

text: Human

characteristic: NCBI submission package

text: Guokai Chen

text: human breast-MSC

text: patient

text: XX

text: Homo sapiens

characteristic: organism

text: human breast-MSC

text: cell culture

text: female

text: breast

text: human breast-MSC-P4


22 human breast-MSC, P10

characteristic: External Id

text: Univeristy of Macau

text: live

text: Human

text: Guokai Chen

text: human breast-MSC

text: patient

text: XX

text: Homo sapiens

text: human breast-MSC

text: cell culture

text: female

text: breast

characteristic: title

text: human breast-MSC-P10


23 human umbilical cord-MSC, P4

text: Univeristy of Macau

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Human

text: Guokai Chen

text: human umbilical cord-MSC

text: patient

text: XX

text: Homo sapiens

text: human umbilical cord-MSC

text: cell culture

text: female

text: umbilical cord

text: human umbilical cord-MSC-P4


24 human umbilical cord-MSC, P10

text: Univeristy of Macau

text: live

text: Human

characteristic: SRA accession

characteristic: age

text: Guokai Chen

text: human umbilical cord-MSC

text: patient

text: XX

text: Homo sapiens

text: human umbilical cord-MSC

text: cell culture

text: female

text: umbilical cord

text: human umbilical cord-MSC-P10


text: southwest hospital, third military medical university

text: live

text: Model organism or animal

characteristic: isolate

text: Mus musculus

text: carcinoma of colon and rectum

text: Model organism or animal sample from Mus musculus


text: The Chinese University of Hong Kong

text: live

text: Model organism or animal

text: 10 weeks

text: A bead-based strategy to screen viable CD45- cells was applied. The whole mouse aortae (n=3) of the normal diet group were isolated after intracardiac perfusion with ice-cold PBS. The finely cut aortae were incubated in 1x aortic dissociation enzyme cocktail (450 U/mL collagenase type I, 60 U/mL DNase I, and 60U/mL hyaluronidase) at 37oC for 1 h. The digestion was halted by adding FACS buffer (2 mM EDTA, 2% FBS). The cell suspension was transferred through 50 m cell strainer for subsequent incubation with dead cell removal microbeads (Miltenyi Biotec, North Rhine-Westphalia, Germany) at room temperature for 15 min. Viable cells were collected by transferring cell suspension through a MS column (Miltenyi Biotec) on a magnet. Later, the viable cells were incubated with CD45 microbeads (Miltenyi Biotec) on ice for 15 min for negative selection through a LS column (Miltenyi Biotec) on a magnet. The flow-through cells were centrifuged and resuspended in 0.04% BSA-PBS for droplet-based scRNA-seq.

characteristic: description

text: Mus musculus

text: Single cell

text: male

text: ApoE-/-

characteristic: strain

text: Aortae

text: ApoE-/- mice fed with normal diet

text: Normal diet


text: The Chinese University of Hong Kong

text: live

text: Model organism or animal

text: 10 weeks

text: A bead-based strategy to screen viable CD45- cells was applied. The whole mouse aortae (n=3) of the Western diet group were isolated after intracardiac perfusion with ice-cold PBS. The finely cut aortae were incubated in 1x aortic dissociation enzyme cocktail (450 U/mL collagenase type I, 60 U/mL DNase I, and 60U/mL hyaluronidase) at 37oC for 1 h. The digestion was halted by adding FACS buffer (2 mM EDTA, 2% FBS). The cell suspension was transferred through 50 m cell strainer for subsequent incubation with dead cell removal microbeads (Miltenyi Biotec, North Rhine-Westphalia, Germany) at room temperature for 15 min. Viable cells were collected by transferring cell suspension through a MS column (Miltenyi Biotec) on a magnet. Later, the viable cells were incubated with CD45 microbeads (Miltenyi Biotec) on ice for 15 min for negative selection through a LS column (Miltenyi Biotec) on a magnet. The flow-through cells were centrifuged and resuspended in 0.04% BSA-PBS for droplet-based scRNA-seq.

text: Mus musculus

text: Single cell

text: male

characteristic: sex

text: ApoE-/-

text: Aortae

characteristic: tissue

text: ApoE-/- mice fed with Western diet

text: Western diet


name: Supragingival dental plaque from caries-free group at Baseline

text: FISABIO

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: 53 patients were enrolled in the study, including 26 caries-active (CA) and 27 caries-free (CF) adults. Patients were considered CA if they had 3 active caries lesions (ICDAS score 1-3), and CF if they had either ICDAS score 0 or ICDAS score of 1-3 where the lesion is inactive. At the start of the study subjects were instructed how to brush their teeth twice a day and had a washout period of one week using a dentifrice containing 1450 ppm fluoride as sodium monofluorophosphate (MFP) and an insoluble calcium compound. After 1 week, supragingival dental plaque was collected from either three active caries lesions sites in CA patients or 3 caries free sites in caries free patients by a sterile spoon excavator. Samples from the same participant were pooled in a tube containing RNAprotect (Qiagen, Hilden, Germany), thoroughly resuspended and placed into dry ice to flash freeze, which was named Baseline. At this point, patients continued to use the same 1,450 ppm MFP dentifrice with an insoluble calcium compound used during the washout period. After 3 months, another sample from the same sites was taken and processed by the same procedure (we refer to these samples as Fluoride). Patients received then a dentifrice with 1.5% arginine, 1450 ppm fluoride as a sodium MFP and an insoluble calcium compound, which they used for an additional 6 months. After 6 months, a third set of samples was collected and termed Fl-Arg. Sampling at all time points was repeated a week after the initial visit to have a replicate of samples collected. Replicates were combined to obtain enough nucleic acids concentration to perform the metagenome and metatranscriptome analyses. The same CA or CF teeth were sampled at every collection time point. Patients were asked to visit the clinic at least 12 hours after their last teeth brushing, meal or drink (anything but water).

text: United Kingdom: London

text: Homo sapiens

characteristic: host

text: 51.509865 N 0.118092 W

text: human oral metagenome

text: Dental plaque microbiota caries-free group at Baseline


name: Supragingival dental plaque from caries-active group at Baseline

text: FISABIO

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: United Kingdom: London

text: Homo sapiens

text: 51.509865 N 0.118092 W

text: human oral metagenome

text: Metagenome or environmental sample from Homo sapiens oral sample


name: Supragingival dental plaque from caries-free group after Fluoride treatment

text: FISABIO

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: United Kingdom: London

text: Homo sapiens

text: 51.509865 N 0.118092 W

text: human oral metagenome

text: Supragingival dental plaque from caries-free group after fluoride treatment


name: Supragingival dental plaque from caries-active group after Fluoride treatment

characteristic: External Id

text: FISABIO

text: live

text: Metagenome or environmental

text: United Kingdom: London

text: Homo sapiens

text: 51.509865 N 0.118092 W

text: human oral metagenome

characteristic: organism


name: Supragingival dental plaque from caries-free group after Fluoride and Arginine treatment

text: FISABIO

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: United Kingdom: London

text: Homo sapiens

text: 51.509865 N 0.118092 W

text: human oral metagenome

characteristic: title


name: Supragingival dental plaque from caries-active group after Fluoride and Arginine treatment

text: FISABIO

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: United Kingdom: London

text: Homo sapiens

text: 51.509865 N 0.118092 W

text: human oral metagenome


text: Institute of Sciences of Food Production (ISPA)

text: live

text: Pathogen.env

text: Mekhloufi Omar Amine

text: Algeria

text: ready-to-eat foods

text: 35.35080098 N 1.31287689 E

text: Staphylococcus aureus

text: Pathogen: environmental/food/other sample from Staphylococcus aureus


tag: Namespace:DOE Joint Genome Institute

text: Host-associated | Plants | Roots | Rhizosphere | Soil

characteristic: GOLD Ecosystem Classification

text: DOE Joint Genome Institute

text: live

text: Metagenome or environmental

characteristic: collection date

text: USA: Newark, Delaware

characteristic: geo loc name

text: Oryza sativa

text: Rhizosphere soil from rice plant in paddy mesocosm

characteristic: isolation source

text: 39.66844 N 75.7447 W

characteristic: lat lon

text: rhizosphere metagenome

text: Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED


name: Complete Genome Sequence of an Uncultured Chloroflexi bacterium TM_07

text: Universidad Nacional Autonoma de Mexico

characteristic: INSDC first public

text: live

text: MIMAG.host-associated

text: This BioSample is a metagenomic assembly obtained from the host Thoosa mismalolli metagenome BioSample: SAMN18340502

characteristic: derived-from

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

text: marine biome

text: shoreline

text: seawater

characteristic: environmental sample

text: Mexico: Isabel Island

text: Thoosa mismalolli (marine Sponge)

characteristic: isolate

text: seawater

text: 21.52 N 105.54 W

text: sponge metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Chloroflexota bacterium

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Chloroflexota bacterium


characteristic: External Id

text: The Pennsylvania State University

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: bolting

characteristic: developmental stage

characteristic: ecotype

text: WT

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: WT

characteristic: phenotype

text: biological replicate 6

characteristic: replicate type

text: WT6 [Bisulfite-Seq]


text: The Pennsylvania State University

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: bolting

text: PPD3-RNAi T+

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 1

characteristic: title


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: WT

text: Arabidopsis thaliana

text: WT

text: biological replicate 3

text: WT3 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: WT

text: Arabidopsis thaliana

text: WT

text: biological replicate 2

text: WT2 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: WT

text: Arabidopsis thaliana

text: WT

text: biological replicate 1

text: WT1 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: large

text: biological replicate 3

text: Gen2_8 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: large

text: biological replicate 2

text: Gen2_7 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: large

text: biological replicate 1

text: Gen2_6 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 5

text: Gen2_5 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 4

text: Gen2_4 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 3

text: Gen2_3 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 2

text: Gen2_2 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 1

text: Gen2_1 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen1

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 3

text: Gen1_3 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen1

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 2

text: Gen1_2 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen1

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 1

text: Gen1_1 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: normal

text: biological replicate 3

text: T+6 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: normal

text: biological replicate 2

text: T+5 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: normal

text: biological replicate 1

text: T+4 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 3

text: T+3 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 2

text: T+2 [RNA-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 1

text: T+1 [RNA-Seq]


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

characteristic: cultivar

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from eighth internode

characteristic: description

text: USA: Illinois

characteristic: geo loc name

text: 40.0872 N 88.2322 W

characteristic: lat lon

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - Chen_18


characteristic: External Id

text: DOE Joint Genome Institute

characteristic: INSDC center name

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - Chen_12


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

characteristic: NCBI submission model

characteristic: NCBI submission package

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - Chen_11


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from reproductive stage leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

characteristic: organism

text: Sorghum bicolor Tx430 gene expression profiling - 20181586


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from reproductive stage stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181436


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181327


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from vegetative stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181194


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181084


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from vegetative stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181338


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from reproductive stage stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181425


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from reproductive stage leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181579


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181429


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181167


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181516


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181722


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181067


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181096


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181723


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181164


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181717


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from vegetative stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181179x


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181239


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from vegetative stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181097


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181098


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181318


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from reproductive stage leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181577


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181229


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from reproductive stage leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181416


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181276


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181264x


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from reproductive stage stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181433


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181087


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181708


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

characteristic: developmental stage

characteristic: ecotype

text: WT

characteristic: genotype

text: Arabidopsis thaliana

text: WT

characteristic: phenotype

text: biological replicate 5

text: WT5 [Bisulfite-Seq]


text: The Pennsylvania State University

characteristic: INSDC first public

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: bolting

text: WT

text: Arabidopsis thaliana

text: WT

text: biological replicate 2

characteristic: replicate type

text: WT2 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: WT

text: Arabidopsis thaliana

text: WT

text: biological replicate 1

text: WT1 [Bisulfite-Seq]

characteristic: title


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: large

text: biological replicate 3

text: Gen2_8 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: large

text: biological replicate 2

text: Gen2_7 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: WT

text: Arabidopsis thaliana

text: WT

text: biological replicate 4

text: WT4 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: WT

text: Arabidopsis thaliana

text: WT

text: biological replicate 3

text: WT3 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: large

text: biological replicate 1

text: Gen2_6 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 5

text: Gen2_5 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 4

text: Gen2_4 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 3

text: Gen2_3 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 2

text: Gen2_2 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen2

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 1

text: Gen2_1 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen1

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 3

text: Gen1_3 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen1

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 2

text: Gen1_2 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX null Gen1

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 1

text: Gen1_1 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: normal

text: biological replicate 3

text: T+6 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: normal

text: biological replicate 2

text: T+5 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: normal

text: biological replicate 1

text: T+4 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 3

text: T+3 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 2

text: T+2 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-OX T+

text: Arabidopsis thaliana

text: dwarf

text: biological replicate 1

text: T+1 [Bisulfite-Seq]


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: WT

text: Arabidopsis thaliana

text: WT

text: biological replicate 3


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: WT

text: Arabidopsis thaliana

text: WT

text: biological replicate 2


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: WT

text: Arabidopsis thaliana

text: WT

text: biological replicate 1


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-RNAi T+

text: Arabidopsis thaliana

text: large

text: biological replicate 3


text: The Pennsylvania State University

text: live

text: Generic

text: bolting

text: PPD3-RNAi T+

text: Arabidopsis thaliana

text: large

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text: live

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text: live

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text: live

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text: USA: Illinois

text: 40.0872 N 88.2322 W

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text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

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text: live

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text: USA: Illinois

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text: live

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text: USA: Illinois

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text: Sorghum bicolor diversity Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

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text: USA: Illinois

text: 40.0872 N 88.2322 W

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text: live

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text: live

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text: USA: Illinois

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text: live

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text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from reproductive stage leaf

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text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

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text: live

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text: Sorghum bicolor diversity Gene Expression Profiling. Sample from vegetative stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

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text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181165


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

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text: Sorghum bicolor Tx430 gene expression profiling - 20181702


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

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text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

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text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

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text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181249


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181343


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from second leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - Chen_5


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

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text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181337


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

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text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181739


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from vegetative stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181190


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181175


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181145


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from reproductive stage stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181431


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from fourth internode

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - Chen_20


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181727


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from reproductive stage leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181508


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181313


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181317


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181419


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

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text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181314


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from reproductive stage stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181520


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181434


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181326


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from reproductive stage stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181423


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from reproductive stage leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181491


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181601


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181156


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor Genetic Variants Gene Expression Profiling. Sample from vegetative stem

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181352x


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181100


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: Sorghum bicolor diversity Gene Expression Profiling. Sample from vegetative leaf

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181142


text: DOE Joint Genome Institute

text: live

text: MIGS.eu

text: USA: Illinois

text: 40.0872 N 88.2322 W

text: Sorghum bicolor

text: Sorghum bicolor Tx430 gene expression profiling - 20181424