text: live

text: MIGS.vi

text: MIGS/MIMS/MIMARKS.wastewater

text: Keywords: GSC:MIxS;MIGS:6.0

text: municipal sewage

text: China:Shenzhen

text: municipal sewage

text: Weissella phage WC29P2

text: lytic

text: MIGS Viral sample from Weissella phage WC29P2


status: PUBLIC

characteristic: External Id

text: Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS.vi

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.wastewater

characteristic: NCBI submission package

tag: attribute

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: municipal sewage

text: China:Shenzhen

text: municipal sewage

characteristic: isolate

text: Weissella phage WC29P3

characteristic: organism

text: lytic

characteristic: propagation

characteristic: strain

text: MIGS Viral sample from Weissella phage WC29P3

characteristic: title


text: Stanford University

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: Plasma from Patient with Sepsis

text: USA:California

text: Homo sapiens

characteristic: host

text: human plasma

text: 37.4275 N 122.1697 W

text: human blood metagenome

text: Metagenome or environmental sample from human blood metagenome


text: Stanford University

text: live

text: Metagenome or environmental

text: Plasma from Asymptomatic Control

text: USA:California

text: Homo sapiens

text: human plasma

text: 37.4275 N 122.1697 W

text: human blood metagenome


text: Huazhong

text: live

text: Model organism or animal

text: not collected

characteristic: age

text: crayfish

characteristic: breed

text: one month

text: not collected

characteristic: ecotype

text: muscle1 of Procambarus clarkii

text: Procambarus clarkii

text: muscle

characteristic: tissue

text: Model organism or animal sample from Procambarus clarkii


characteristic: External Id

text: Huazhong

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Model organism or animal

text: not collected

text: crayfish

text: one month

text: not collected

text: muscle2 of Procambarus clarkii

text: Procambarus clarkii

text: muscle


text: Huazhong

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: not collected

text: crayfish

text: one month

text: not collected

text: muscle3 of Procambarus clarkii

text: Procambarus clarkii

text: muscle


text: Huazhong

text: live

text: Model organism or animal

text: not collected

text: crayfish

text: one month

text: not collected

text: muscle4 of Procambarus clarkii

characteristic: isolate

text: Procambarus clarkii

characteristic: organism

text: muscle


text: Huazhong

text: live

text: Model organism or animal

text: not collected

text: crayfish

text: one month

text: not collected

text: muscle5 of Procambarus clarkii

text: Procambarus clarkii

text: muscle

characteristic: title


text: Huazhong

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

text: not collected

text: crayfish

text: one month

text: not collected

text: muscle6 of Procambarus clarkii

text: Procambarus clarkii

text: muscle


text: Huazhong

text: live

text: Model organism or animal

characteristic: SRA accession

text: not collected

text: crayfish

text: one month

text: not collected

text: muscle7 of Procambarus clarkii

text: Procambarus clarkii

text: muscle


text: Huazhong

text: live

text: Model organism or animal

text: not collected

text: crayfish

text: one month

text: not collected

text: muscle8 of Procambarus clarkii

text: Procambarus clarkii

text: muscle


text: Huazhong

text: live

text: Model organism or animal

text: not collected

text: crayfish

text: one month

text: not collected

text: muscle9 of Procambarus clarkii

text: Procambarus clarkii

text: muscle


text: INRAE

text: live

text: Microbe, viral or environmental

characteristic: SMZ Dose

characteristic: Time

text: Canada

text: Microbacterium

characteristic: replicate attribute

text: bacterial cell

characteristic: strain

text: Microbe sample from Microbacterium


text: INAIL-DIT, Research Area

text: live

text: MIGS.ba

text: 1-5 cm

characteristic: depth

text: A deep understanding of halotolerant/halophilic bacteria with the ability to degrade polymers has broad relevance to biotechnological sectors, including marine biomass conversion and plastic biodegradation. Here, we investigated a carotenoid-pigmented and halotolerant bacterium, Echinicola sp. strain H1, isolated from the hepatopancreas of Tylos ponticus (associated with beached leaves of the seagrass Posidonia oceanica). We report the draft genome sequence of Echinicola sp. H1 obtained with Illumina platform. The genome was assembled de novo and was used to functionally annotate Echinicola sp. H1. This genome sequence provided essential information for future transcriptomic studies, particularly under salt stress conditions.

characteristic: description

characteristic: elev

text: hepatopancreas of Tylos ponticus (Crustacea, Isopoda)

text: hepatopancreas of Tylos ponticus

text: hepatopancreas from Tylos ponticus

text: Italy: Sant Agostino, Civitavecchia

text: NA +NaCl

text: hepatopancreas of Tylos ponticus

text: 42.159167 N 11.734444 E

text: Echinicola sp. H1

text: no reference

text: Genome sequencing and assembly of Echinicola sp. H1 (Bacteroidetes) with a high biotech potential.


characteristic: External Id

text: INAIL-DIT, Research Area

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIGS.ba

text: 1-5 cm

text: A deep understanding of halotolerant/halophilic bacteria with the ability to degrade polymers has broad relevance to biotechnological sectors, including marine biomass conversion and plastic biodegradation. Here, we investigated Paraoerskovia sp. strain H5 (Cellulomonadaceae), isolated from the hepatopancreas of the oniscidean isopod Tylos ponticus (from a supralittoral zone with beached leaves of the seagrass Posidonia oceanica, Lazio, Italy). We report the draft genome sequence of Paraoerskovia sp. H5 obtained with Illumina platform. The genome was assembled de novo and was used to functionally annotate Paraoerskovia sp. H5. This genome sequence provided essential information for future transcriptomic studies, particularly under salt stress conditions.

text: hepatopancreas of Tylos ponticus

text: hepatopancreas from Tylos ponticus

text: Italy: Sant Agostino, Civitavecchia

text: NA +NaCl

text: 42.159167 N 11.734444 E

text: Paraoerskovia sp. H5

text: no reference

text: Genome sequencing and assembly of Paraoerskovia sp. H5 (Actinobacteria; Micrococcales; Cellulomonadaceae) with a high biotech potential.


DSM 22626

text: Karadeniz Technical University

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: culture-collection

text: 1 meter

text: Keywords: GSC:MIxS;MIGS:6.0

text: 1000 meter

text: well-pipeline

text: high temperature well-pipeline

text: sediment

text: Turkey: Aydin, Salavatli

text: 37.89265658 N 28.10338618 E

text: Anoxybacillus gonensis

text: DSM 22626

text: MIGS Cultured Bacterial/Archaeal sample from Anoxybacillus gonensis

text: type strain of Anoxybacillus salavatliensis

characteristic: type-material


text: Leukaemia Translational Research, Cancer Centre, Telethon Kids Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: female

characteristic: Sex

text: Mesenchymal stem cells

characteristic: cell type

text: Leukemia

characteristic: disease state

text: Mus musculus

characteristic: organism

text: Bone marrow

text: Bone marrow

characteristic: tissue

text: Mesenchymal stem cells, leukemia, rep 2

characteristic: title


text: live

text: Generic

characteristic: SRA accession

text: female

text: Mesenchymal stem cells

text: Leukemia

text: Mus musculus

text: Bone marrow

characteristic: strain

text: Bone marrow

text: Mesenchymal stem cells, leukemia, rep 1


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: female

text: Mesenchymal stem cells

text: Control

text: Mus musculus

text: Bone marrow

text: Bone marrow

text: Mesenchymal stem cells, control, rep 2


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: female

text: Mesenchymal stem cells

text: Control

text: Mus musculus

text: Bone marrow

text: Bone marrow

text: Mesenchymal stem cells, control, rep 1


text: University of Warmia nad Mazury

text: live

characteristic: INSDC status

text: Pathogen.env

characteristic: NCBI submission model

text: Department of Industrial and Food Microbiology

text: Poland

text: smoked salmon

text: 53.45 N 20.27 E

text: Listeria monocytogenes

text: Pathogen: environmental/food/other sample from Listeria monocytogenes


text: University of Warmia nad Mazury

text: live

text: Pathogen.env

text: Poland

text: fish processing plant

text: 53.45 N 20.27 E

text: Listeria monocytogenes


text: University of Warmia nad Mazury

text: live

text: Pathogen.env

text: Poland

text: raw salmon

text: 53.45 N 20.27 E

text: Listeria monocytogenes


text: University of Warmia and Mazury in Olsztyn

text: live

text: Pathogen.env

text: Poland

text: food

text: 53.45 N 20.27 E

text: Staphylococcus aureus

text: Pathogen: environmental/food/other sample from Staphylococcus aureus


text: live

text: Pathogen.env

text: Poland

text: food procesing plant

text: 53.45 N 20.27 E

text: Staphylococcus aureus


Candida albicans

text: University of Macau, Avenida da Universidade, Taipa, Macau SAR, China

text: live

text: Microbe, viral or environmental

text: Homo sapiens

characteristic: host

text: Candidiasis

text: Candida albicans

text: Whole organism

text: Microbe sample from Candida albicans


text: Institute of Microbiology, Chinese Academy of Sciences

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: China

text: Homo sapiens

text: Streptococcus pneumoniae

text: MIGS Cultured Bacterial/Archaeal sample from Streptococcus pneumoniae


C. natans from control bin #2

text: University of Texas at Arlington

characteristic: INSDC secondary accession

text: live

text: Invertebrate

characteristic: NCBI submission package

text: Marilyn Brandt

text: University of the Virgin Islands

text: Virgin Islands: St. Thomas, Rupert's Rock Reef

text: C. natans #2

characteristic: isolate

text: Control bin #2

text: Colpophyllia natans

text: Whole tissue


C. natans from control bin #3

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: C. natans colony #3

text: Control bin #3

text: Colpophyllia natans

text: Whole tissue


C. natans from control bin #4

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: C. natans colony #4

text: Control bin #4

text: Colpophyllia natans

text: Whole tissue


C. natans from control bin #6

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: C. natans colony #6

text: Control bin #6

text: Colpophyllia natans

text: Whole tissue


C. natans from control bin #8

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: C. natans colony #8

text: Control bin #8

text: Colpophyllia natans

text: Whole tissue


C. natans from disease bin #2

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: C. natans colony #2

text: Disease bin #2

text: Colpophyllia natans

text: Whole tissue


C. natans from disease bin #3

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: C. natans colony #3

text: Disease bin #3

text: Colpophyllia natans

text: Whole tissue


C. natans from disease bin #4

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: C. natans colony #4

text: Disease bin #4

text: Colpophyllia natans

text: Whole tissue


C. natans from disease bin #6

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: C. natans colony#6

text: Disease bin #6

text: Colpophyllia natans

text: Whole tissue


C. natans from disease bin #8

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: C. natans colony#8

text: Disease bin #8

text: Colpophyllia natans

text: Whole tissue


M. cavernosa from control bin #1

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #1

text: Control bin #1

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from control bin #3

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #3

text: Control bin #3

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from control bin #5

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #5

text: Control bin #5

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from control bin #6

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #6

text: Control bin #6

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from control bin #7

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #7

text: Control bin #7

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from control bin #8

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #8

text: Control bin #8

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from disease bin #1

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #1

text: Disease bin #1

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from disease bin #2

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #2

text: Disease bin #2

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from disease bin #3

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #3

text: Disease bin #3

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from disease bin #4

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #4

text: Disease bin #4

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from disease bin #5

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #5

text: Disease bin #5

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from disease bin #6

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #6

text: Disease bin #6

text: Montastraea cavernosa

text: Whole tissue


M. cavernosa from disease bin #8

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: M. cavernosa colony #8

text: Disease bin #8

text: Montastraea cavernosa

text: Whole tissue


O. annularis from control bin #1

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: O. annularis colony #1

text: Control bin #1

text: Orbicella annularis

text: Whole tissue


O. annularis from control bin #2

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: O. annularis colony #2

text: Control bin #2

text: Orbicella annularis

text: Whole tissue


O. annularis from control bin #3

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: O. annularis colony #3

text: Control bin #3

text: Orbicella annularis

text: Whole tissue


O. annularis from control bin #6

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: O. annularis colony #6

text: Control bin #6

text: Orbicella annularis

text: Whole tissue


O. annularis from control bin #7

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: O. annularis colony #7

text: Control bin #7

text: Orbicella annularis

text: Whole tissue


O. annularis from control bin #8

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: O. annularis colony #8

text: Control bin #8

text: Orbicella annularis

text: Whole tissue


O. annularis from disease bin #1

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: O. annularis colony #1

text: Disease bin #1

text: Orbicella annularis

text: Whole tissue


O. annularis from disease bin #3

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: O. annularis colony #3

text: Disease bin #3

text: Orbicella annularis

text: Whole tissue


O. annularis from disease bin #6

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: O. annularis colony #6

text: Disease bin #6

text: Orbicella annularis

text: Whole tissue


O. annularis from disease bin #7

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: O. annularis colony #7

text: Disease bin #7

text: Orbicella annularis

text: Whole tissue


O. annularis from disease bin #8

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: O. annularis colony #8

text: Disease bin #8

text: Orbicella annularis

text: Whole tissue


P. astreoides from control bin #1

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. astreoides colony #1

text: Control bin #1

text: Porites astreoides

text: Whole tissue


P. astreoides from control bin #5

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. astreoides colony #5

text: Control bin #5

text: Porites astreoides

text: Whole tissue


P. astreoides from control bin #6

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. astreoides colony #6

text: Control bin #6

text: Porites astreoides

text: Whole tissue


P. astreoides from control bin #7

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. astreoides colony #7

text: Control bin #7

text: Porites astreoides

text: Whole tissue


P. astreoides from disease bin #1

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. astreoides colony #1

text: Disease bin #1

text: Porites astreoides

text: Whole tissue


P. astreoides from disease bin #2

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. astreoides colony #2

text: Disease bin #2

text: Porites astreoides

text: Whole tissue


P. astreoides from disease bin #3

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. astreoides colony #3

text: Disease bin #3

text: Porites astreoides

text: Whole tissue


P. astreoides from disease bin #4

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. astreoides colony #4

text: Disease bin #4

text: Porites astreoides

text: Whole tissue


P. astreoides from disease bin #5

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. astreoides colony #5

text: Disease bin #5

text: Porites astreoides

text: Whole tissue


P. astreoides from disease bin #6

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. astreoides colony #6

text: Disease bin #6

text: Porites astreoides

text: Whole tissue


P. astreoides from disease bin #7

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. astreoides colony #7

text: Disease bin #7

text: Porites astreoides

text: Whole tissue


P. strigosa from control bin #3

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. strigosa colony #3

text: Control bin #3

text: Pseudodiploria strigosa

text: Whole tissue


P. strigosa from control bin #5

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. strigosa colony #5

text: Control bin #5

text: Pseudodiploria strigosa

text: Whole tissue


P. strigosa from control bin #7

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. strigosa colony #7

text: Control bin #7

text: Pseudodiploria strigosa

text: Whole tissue


P. strigosa from control bin #8

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. strigosa colony #8

text: Control bin #8

text: Pseudodiploria strigosa

text: Whole tissue


P. strigosa from disease bin #3

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. strigosa colony #3

text: Disease bin #3

text: Pseudodiploria strigosa

text: Whole tissue


P. strigosa from disease bin #5

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. strigosa colony #5

text: Disease bin #5

text: Pseudodiploria strigosa

text: Whole tissue


P. strigosa from disease bin #7

text: University of Texas at Arlington

text: live

text: Invertebrate

text: Marilyn Brandt

text: University of the Virgin Islands

text: P. strigosa colony #7

text: Disease bin #7

text: Pseudodiploria strigosa

text: Whole tissue


text: NIBR Oncology

text: live

text: Human

characteristic: age

text: Broad Institute

text: dox

text: Homo sapiens

characteristic: replicate

text: female

characteristic: sex

text: uvea

text: Human sample from Homo sapiens


text: NIBR Oncology

text: live

text: Human

text: Broad Institute

text: nodox

text: Homo sapiens

characteristic: organism

text: female

text: uvea

characteristic: tissue

text: Human sample from Homo sapiens

characteristic: title


characteristic: External Id

text: Wysocka, Chemical and Systems Biology, Stanford University

text: live

text: Generic

characteristic: SRA accession

text: R1 TASOR-AGH

characteristic: cell line

text: ESC

characteristic: cell type

text: GFP (Thermo Fisher Scientific, A-11122)

characteristic: chip antibody

text: Mus musculus

text: R1 TASOR-AGH

text: TASOR-AGH, auxin, TASOR (GFP) 3

text: auxin, 500uM, 12h

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: R1 TASOR-AGH

text: ESC

text: GFP (Thermo Fisher Scientific, A-11122)

text: Mus musculus

text: R1 TASOR-AGH

text: TASOR-AGH, auxin, TASOR (GFP) 2

text: auxin, 500uM, 12h


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission package

text: R1 TASOR-AGH

text: ESC

text: GFP (Thermo Fisher Scientific, A-11122)

text: Mus musculus

text: R1 TASOR-AGH

text: TASOR-AGH, auxin, TASOR (GFP) 1

text: auxin, 500uM, 12h


text: live

text: Generic

text: R1 TASOR-AGH

text: ESC

text: GFP (Thermo Fisher Scientific, A-11122)

text: Mus musculus

text: R1 TASOR-AGH

text: TASOR-AGH, untreated, TASOR (GFP) 3

text: untreated


text: live

text: Generic

text: R1 TASOR-AGH

text: ESC

text: GFP (Thermo Fisher Scientific, A-11122)

text: Mus musculus

text: R1 TASOR-AGH

text: TASOR-AGH, untreated, TASOR (GFP) 2

text: untreated


text: live

text: Generic

text: R1 TASOR-AGH

text: ESC

text: GFP (Thermo Fisher Scientific, A-11122)

text: Mus musculus

text: R1 TASOR-AGH

text: TASOR-AGH, untreated, TASOR (GFP) 1

text: untreated


text: live

text: Generic

text: R1 TASOR-AGH WDR82 KO clone T1

text: ESC

text: WDR82 (CST, #99715)

text: Mus musculus

text: R1 TASOR-AGH WDR82 KO clone T1

text: TASOR-AGH WDR82 KO T1, untreated, WDR82

text: untreated


text: live

text: Generic

text: R1 TASOR-AGH

text: ESC

text: WDR82 (CST, #99715)

text: Mus musculus

text: R1 TASOR-AGH

text: TASOR-AGH, untreated, WDR82

text: untreated


text: live

text: Generic

text: R1 WDR82 KO clone W4

text: ESC

text: WDR82 (CST, #99715)

text: Mus musculus

text: R1 WDR82 KO clone W4

text: WDR82 KO W4, untreated, WDR82

text: untreated


text: live

text: Generic

text: R1 WT

text: ESC

text: WDR82 (CST, #99715)

text: Mus musculus

text: R1 WT

text: WT, untreated, WDR82

text: untreated


text: live

text: Generic

text: R1 WDR82 KO clone W4

text: ESC

text: H3K4me3 (Abcam, ab8580)

text: Mus musculus

text: R1 WDR82 KO clone W4

text: WDR82 KO W4, untreated, H3K4me3

text: untreated


text: live

text: Generic

text: R1 WT

text: ESC

text: H3K4me3 (Abcam, ab8580)

text: Mus musculus

text: R1 WT

text: WT, untreated, H3K4me3

text: untreated


text: live

text: Generic

text: R1 WDR82 KO clone W4

text: ESC

text: Mus musculus

text: R1 WDR82 KO clone W4

text: WDR82 KO W4, untreated, input 2

text: untreated


text: live

text: Generic

text: R1 WT

text: ESC

text: Mus musculus

text: R1 WT

text: WT, untreated, input 2

text: untreated


text: live

text: Generic

text: R1 TASOR-AGH WDR82 KO clone T5

text: ESC

text: GFP (Thermo Fisher Scientific, A-11122)

text: Mus musculus

text: R1 TASOR-AGH WDR82 KO clone T5

text: TASOR-AGH WDR82 KO T5, untreated, TASOR (GFP)

text: untreated


text: live

text: Generic

text: R1 TASOR-AGH WDR82 KO clone T1

text: ESC

text: GFP (Thermo Fisher Scientific, A-11122)

text: Mus musculus

text: R1 TASOR-AGH WDR82 KO clone T1

text: TASOR-AGH WDR82 KO T1, untreated, TASOR (GFP)

text: untreated


text: live

text: Generic

text: R1 TASOR-AGH

text: ESC

text: GFP (Thermo Fisher Scientific, A-11122)

text: Mus musculus

text: R1 TASOR-AGH

text: TASOR-AGH, untreated, TASOR (GFP)

text: untreated


text: live

text: Generic

text: R1 WDR82 KO clone W8

text: ESC

text: MPP8 (Proteintech, 16796-1)

text: Mus musculus

text: R1 WDR82 KO clone W8

text: WDR82 KO W8, untreated, MPP8

text: untreated


text: live

text: Generic

text: R1 WDR82 KO clone W4

text: ESC

text: MPP8 (Proteintech, 16796-1)

text: Mus musculus

text: R1 WDR82 KO clone W4

text: WDR82 KO W4, untreated, MPP8

text: untreated


text: live

text: Generic

text: R1 WT

text: ESC

text: MPP8 (Proteintech, 16796-1)

text: Mus musculus

text: R1 WT

text: WT, untreated, MPP8

text: untreated


text: live

text: Generic

text: R1 WDR82 KO clone W8

text: ESC

text: H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: R1 WDR82 KO clone W8

text: WDR82 KO W8, untreated, H3K9me3

text: untreated


text: live

text: Generic

text: R1 WDR82 KO clone W4

text: ESC

text: H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: R1 WDR82 KO clone W4

text: WDR82 KO W4, untreated, H3K9me3

text: untreated


text: live

text: Generic

text: R1 WT

text: ESC

text: H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: R1 WT

text: WT, untreated, H3K9me3

text: untreated


text: live

text: Generic

text: R1 TASOR-AGH WDR82 KO clone T5

text: ESC

text: Mus musculus

text: R1 TASOR-AGH WDR82 KO clone T5

text: TASOR-AGH WDR82 KO T5, untreated, input

text: untreated


text: live

text: Generic

text: R1 TASOR-AGH WDR82 KO clone T1

text: ESC

text: Mus musculus

text: R1 TASOR-AGH WDR82 KO clone T1

text: TASOR-AGH WDR82 KO T1, untreated, input

text: untreated


text: live

text: Generic

text: R1 TASOR-AGH

text: ESC

text: Mus musculus

text: R1 TASOR-AGH

text: TASOR-AGH, untreated, input

text: untreated


text: live

text: Generic

text: R1 WDR82 KO clone W8

text: ESC

text: Mus musculus

text: R1 WDR82 KO clone W8

text: WDR82 KO W8, untreated, input

text: untreated


text: live

text: Generic

text: R1 WDR82 KO clone W4

text: ESC

text: Mus musculus

text: R1 WDR82 KO clone W4

text: WDR82 KO W4, untreated, input 1

text: untreated


text: live

text: Generic

text: R1 WT

text: ESC

text: Mus musculus

text: R1 WT

text: WT, untreated, input 1

text: untreated


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: MPP8 (Proteintech, 16796-1)

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, 12h auxin, MPP8, replicate 3

text: auxin, 500uM, 12h


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: MPP8 (Proteintech, 16796-1)

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, 12h auxin, MPP8, replicate 2

text: auxin, 500uM, 12h


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: MPP8 (Proteintech, 16796-1)

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, 12h auxin, MPP8, replicate 1

text: auxin, 500uM, 12h


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: MPP8 (Proteintech, 16796-1)

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, untreated, MPP8, replicate 3

text: untreated


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: MPP8 (Proteintech, 16796-1)

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, untreated, MPP8, replicate 2

text: untreated


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: MPP8 (Proteintech, 16796-1)

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, untreated, MPP8, replicate 1

text: untreated


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, 12h auxin, H3K9me3, replicate 2

text: auxin, 500uM, 12h


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, 12h auxin, H3K9me3, replicate 1

text: auxin, 500uM, 12h


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, untreated, H3K9me3, replicate 2

text: untreated


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: H3K9me3 (Abcam, ab8898)

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, untreated, H3K9me3, replicate 1

text: untreated


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, 12h auxin, input, replicate 2

text: auxin, 500uM, 12h


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, 12h auxin, input, replicate 1

text: auxin, 500uM, 12h


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, untreated, input, replicate 2

text: untreated


text: live

text: Generic

text: R1 CPSF3-AGH

text: ESC

text: Mus musculus

text: R1 CPSF3-AGH

text: CPSF3-AGH, untreated, input, replicate 1

text: untreated


text: live

text: Generic

text: R1 WT

text: ESC

text: Mus musculus

text: R1 WT

text: WT, untreated, MPP8, irCLIP, replicate 2

text: untreated


text: live

text: Generic

text: R1 WT

text: ESC

text: Mus musculus

text: R1 WT

text: WT, untreated, MPP8, irCLIP, replicate 1

text: untreated


text: Institut de Recherche pour le Developpement

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.plant-associated

text: parasite

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: tropical biome[ENVO_01001830]|terrestrial biome[ENVO_00000446]

text: agricultural field[ENVO_00000114]

text: Tanzania: Dakawa

text: Oryza sativa

characteristic: host

text: Xanthomonas oryzae pv. oryzae

text: oryzae

characteristic: pathovar

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Xanthomonas oryzae pv. oryzae


characteristic: External Id

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.plant-associated

text: parasite

text: Keywords: GSC:MIxS;MIGS:6.0

text: agricultural field[ENVO_00000114]

text: Tanzania: Mvomero

text: Oryza sativa

text: Xanthomonas oryzae pv. oryzae

characteristic: organism

text: oryzae

characteristic: title


text: Hudan Liu Lab, Medical Research Institute, Wuhan University

text: live

text: Generic

characteristic: SRA accession

text: Mus musculus

text: mouse thymus

text: mouse thymus

characteristic: tissue


text: live

text: Generic

characteristic: cell line

text: Homo sapiens

text: CPX rep3

text: ciclopirox

characteristic: treatment


characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: Homo sapiens

text: CPX rep2

text: ciclopirox


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

text: Homo sapiens

text: CPX rep1

text: ciclopirox


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

text: Homo sapiens

text: DMSO rep3

text: DMSO


text: live

text: Generic

characteristic: NCBI submission package

text: Homo sapiens

text: DMSO rep2

text: DMSO


text: live

text: Generic

text: Homo sapiens

text: DMSO rep1

text: DMSO


text: live

text: Generic

characteristic: antibody

text: Homo sapiens

text: IP rep2

text: IP DHX15


text: live

text: Generic

text: Homo sapiens

text: IP rep1

text: IP DHX15


text: live

text: Generic

text: Homo sapiens

text: input

text: input


text: live

text: Generic

text: igG

text: Homo sapiens

text: igG

text: igG


text: live

text: Generic

text: Homo sapiens

text: sh2 rep3


text: live

text: Generic

text: Homo sapiens

text: sh2 rep2


text: live

text: Generic

text: Homo sapiens

text: sh2 rep1


text: live

text: Generic

text: Homo sapiens

text: sh1 rep3


text: live

text: Generic

text: Homo sapiens

text: sh1 rep2


text: live

text: Generic

text: Homo sapiens

text: sh1 rep1


text: live

text: Generic

text: Homo sapiens

text: ctrl rep3

text: shGFP


text: live

text: Generic

text: Homo sapiens

text: ctrl rep2

text: shGFP


text: live

text: Generic

text: Homo sapiens

text: ctrl rep1

text: shGFP


text: Wysocka, Chemical and Systems Biology, Stanford University

text: live

text: Generic

text: R1 MPP8-AGH

text: ESC

characteristic: cell type

text: Mus musculus

text: R1 MPP8-AGH

text: 7 day

characteristic: time

text: MPP8-AGH, auxin, 7 day, replicate 2

text: auxin, 500uM, 2d


characteristic: External Id

text: live

text: Generic

text: R1 MPP8-AGH

text: ESC

text: Mus musculus

text: R1 MPP8-AGH

text: 7 day

text: MPP8-AGH, auxin, 7 day, replicate 1

text: auxin, 500uM, 2d


text: live

text: Generic

text: R1 MPP8-AGH

text: ESC

text: Mus musculus

characteristic: organism

text: R1 MPP8-AGH

text: 7 day

text: MPP8-AGH, untreated, 7 day, replicate 2

text: untreated


text: live

text: Generic

text: R1 MPP8-AGH

text: ESC

text: Mus musculus

text: R1 MPP8-AGH

text: 7 day

text: MPP8-AGH, untreated, 7 day, replicate 1

characteristic: title

text: untreated


text: live

text: Generic

characteristic: SRA accession

text: R1 MPP8-AGH

text: ESC

text: Mus musculus

text: R1 MPP8-AGH

text: 2 day

text: MPP8-AGH, auxin, 2 day, replicate 2

text: auxin, 500uM, 2d


text: live

text: Generic

text: R1 MPP8-AGH

text: ESC

text: Mus musculus

text: R1 MPP8-AGH

text: 2 day

text: MPP8-AGH, auxin, 2 day, replicate 1

text: auxin, 500uM, 2d


text: live

text: Generic

text: R1 MPP8-AGH

text: ESC

text: Mus musculus

text: R1 MPP8-AGH

text: 2 day

text: MPP8-AGH, untreated, 2 day, replicate 2

text: untreated


text: live

text: Generic

text: R1 MPP8-AGH

text: ESC

text: Mus musculus

text: R1 MPP8-AGH

text: 2 day

text: MPP8-AGH, untreated, 2 day, replicate 1

text: untreated


text: Laboratory of Seeds Molecular Biology, Institute of Biochemistry and Biophysics, Polish Academy of Sciences

text: live

text: Generic

characteristic: genotype

text: Arabidopsis thaliana

text: seeds

text: seeds

characteristic: tissue

text: dog1, NaCl, 4

text: 1/2 MS + 100mM NaCl


text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: dog1, NaCl, 3

text: 1/2 MS + 100mM NaCl

characteristic: treatment


characteristic: INSDC center name

text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: dog1, NaCl, 2

text: 1/2 MS + 100mM NaCl


characteristic: INSDC first public

text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: dog1, NaCl, 1

text: 1/2 MS + 100mM NaCl


characteristic: INSDC last update

text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: Col0, NaCl, 4

text: 1/2 MS + 100mM NaCl


text: live

characteristic: INSDC status

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: Col0, NaCl, 3

text: 1/2 MS + 100mM NaCl


characteristic: INSDC secondary accession

text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: Col0, NaCl, 2

text: 1/2 MS + 100mM NaCl


text: live

text: Generic

characteristic: NCBI submission model

text: Arabidopsis thaliana

text: seeds

text: seeds

text: Col0, NaCl, 1

text: 1/2 MS + 100mM NaCl


text: live

text: Generic

characteristic: NCBI submission package

text: Arabidopsis thaliana

text: seeds

text: seeds

text: dog1, control, 4

text: 1/2 MS


text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: dog1, control, 3

text: 1/2 MS


text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: dog1, control, 2

text: 1/2 MS


text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: dog1, control, 1

text: 1/2 MS


text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: Col0, control, 4

text: 1/2 MS


text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: Col0, control, 3

text: 1/2 MS


text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: Col0, control, 2

text: 1/2 MS


text: live

text: Generic

text: Arabidopsis thaliana

text: seeds

text: seeds

text: Col0, control, 1

text: 1/2 MS


text: Radboud University

text: live

text: Generic

text: whole parasite

text: 3D7 ORC1-HA + pTK-BSD

text: Plasmodium falciparum

text: whole parasite

text: 30 hpi

text: P. falciparum ORC1 ChIPseq 30 hpi (input)


text: Radboud University

text: live

text: Generic

text: whole parasite

text: 3D7 ORC1-HA + pTK-BSD

text: Plasmodium falciparum

text: whole parasite

text: 24 hpi

text: P. falciparum ORC1 ChIPseq 24 hpi (input)


text: Radboud University

text: live

text: Generic

text: whole parasite

text: Rat monoclonal anti-HA IgG1 antibody (clone 3F10) (Roche, catalog# 11867431001)

characteristic: chip antibody

text: 3D7 ORC1-HA + pTK-BSD

text: Plasmodium falciparum

text: whole parasite

text: 30 hpi

text: P. falciparum ORC1 ChIPseq 30 hpi (anti-HA)


text: Radboud University

text: live

text: Generic

text: whole parasite

characteristic: cell type

text: 3D7 ORC1-HA + pTK-BSD

text: Plasmodium falciparum

text: whole parasite

text: 24 hpi

text: P. falciparum ORC1 ChIPseq 24 hpi (anti-HA)


text: Tabaka Lab, International Centre for Translational Eye Research

text: live

text: Generic

text: Mus musculus

text: retina

text: Abca4-/-Rdh8-/- (C57BL/6J)

characteristic: strain

text: 1 day post-bleach, 2 mg/kg BC11-38


characteristic: External Id

text: live

text: Generic

text: Mus musculus

text: retina

text: Abca4-/-Rdh8-/- (C57BL/6J)

text: RPM

text: 1 day post-bleach, 2 mg/kg Rolipram


text: live

text: Generic

text: Mus musculus

characteristic: organism

text: retina

text: Abca4-/-Rdh8-/- (C57BL/6J)

text: 1 day post-bleach, DMSO vehicle


text: live

text: Generic

text: Mus musculus

text: retina

text: Abca4-/-Rdh8-/- (C57BL/6J)

text: NB

characteristic: title

text: non-bleached, DMSO vehicle


text: Saiyong Zhu's lab, Life Sciences Institute, Zhejiang University

text: live

text: Generic

characteristic: SRA accession

characteristic: cell line

text: Mouse embryonic fibroblasts

text: Flag (Sigma-Aldrich, F1804)

text: Mus musculus


text: live

text: Generic

text: Mouse embryonic fibroblasts

text: H3K27ac (Abcam, Ab4729)

text: Mus musculus


text: live

text: Generic

text: Mouse embryonic fibroblasts

text: H3K27ac (Abcam, Ab4729)

text: Mus musculus


text: live

text: Generic

text: embryonic fibroblasts

text: WT shRNA

characteristic: genotype

text: Mus musculus

text: ciPSC reprogramming


text: live

text: Generic

text: embryonic fibroblasts

text: Exosc3 knockdown

text: Mus musculus

text: ciPSC reprogramming

characteristic: treatment


characteristic: INSDC center name

text: live

text: Generic

text: embryonic fibroblasts

text: WT OE

text: Mus musculus

text: ciPSC reprogramming


characteristic: INSDC first public

text: live

text: Generic

text: embryonic fibroblasts

text: Rxra overexpression

text: Mus musculus

text: ciPSC reprogramming


characteristic: INSDC last update

text: live

text: Generic

text: embryonic fibroblasts

text: DMSO addition

text: Mus musculus

text: ciPSC reprogramming


text: live

characteristic: INSDC status

text: Generic

text: embryonic fibroblasts

text: CD addition

text: Mus musculus

text: ciPSC reprogramming


text: Zaret Lab, Cell & Developmental Biology, The University of Pennsylvania

characteristic: INSDC secondary accession

text: live

text: Generic

text: fibroblasts

text: Homo sapiens

text: No

characteristic: senescent

text: proliferating


text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: fibroblasts

text: Homo sapiens

text: Yes

text: senescent


Marasmius tenuissimus INDES-AFHP31

text: Instituto de Investigacion en Bioinformatica y biodiversidad

text: live

text: Microbe, viral or environmental

text: Instituto de Investigacion para el Desarrollo Sustentable de Ceja de Selva, Universidad Nacional Toribio Rodriguez de Mendoza de Amazonas

text: Peru

text: Theobroma cacao

characteristic: host

text: Marasmius tenuissimus

text: Cell culture

text: Marasmius tenuissimus AFHP31


text: Anhui Agricultural University

text: live

text: Generic

text: 12-day old seedlings

characteristic: age

characteristic: ecotype

text: Arabidopsis thaliana

text: seedlings

text: seedlings

characteristic: tissue

text: smeb-2 Salt rep2

text: Salt for 6 h


characteristic: External Id

text: Anhui Agricultural University

text: live

text: Generic

text: 12-day old seedlings

text: Arabidopsis thaliana

characteristic: organism

text: seedlings

text: seedlings

text: smeb-2 Salt rep1

characteristic: title

text: Salt for 6 h


text: Anhui Agricultural University

text: live

text: Generic

characteristic: SRA accession

text: 12-day old seedlings

characteristic: genotype

text: Arabidopsis thaliana

text: seedlings

text: seedlings

text: smeb-1 Salt rep2

text: Salt for 6 h


text: Anhui Agricultural University

characteristic: INSDC center name

text: live

text: Generic

text: 12-day old seedlings

text: Arabidopsis thaliana

text: seedlings

text: seedlings

text: smeb-1 Salt rep1

text: Salt for 6 h

characteristic: treatment


text: Anhui Agricultural University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: 12-day old seedlings

text: wild-type

text: Arabidopsis thaliana

text: seedlings

text: seedlings

text: Col-0 Salt rep2

text: Salt for 6 h


text: Anhui Agricultural University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

text: 12-day old seedlings

text: wild-type

text: Arabidopsis thaliana

text: seedlings

text: seedlings

text: Col-0 Salt rep1

text: Salt for 6 h


text: Anhui Agricultural University

text: live

text: Generic

characteristic: NCBI submission model

text: 12-day old seedlings

text: Arabidopsis thaliana

text: seedlings

text: seedlings

text: smeb-2 control rep2

text: untreated for 6 h


text: Anhui Agricultural University

text: live

text: Generic

characteristic: NCBI submission package

text: 12-day old seedlings

text: Arabidopsis thaliana

text: seedlings

text: seedlings

text: smeb-2 control rep1

text: untreated for 6 h


text: Anhui Agricultural University

text: live

text: Generic

text: 12-day old seedlings

text: Arabidopsis thaliana

text: seedlings

text: seedlings

text: smeb-1 control rep2

text: untreated for 6 h


text: Anhui Agricultural University

text: live

text: Generic

text: 12-day old seedlings

text: Arabidopsis thaliana

text: seedlings

text: seedlings

text: smeb-1 control rep1

text: untreated for 6 h


text: Anhui Agricultural University

text: live

text: Generic

text: 12-day old seedlings

text: wild-type

text: Arabidopsis thaliana

text: seedlings

text: seedlings

text: Col-0 control rep2

text: untreated for 6 h


text: Anhui Agricultural University

text: live

text: Generic

text: 12-day old seedlings

text: wild-type

text: Arabidopsis thaliana

text: seedlings

text: seedlings

text: Col-0 control rep1

text: untreated for 6 h


text: Choudhary Group, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

text: live

text: Generic

text: ES cells

characteristic: cell type

text: H2BK20ac (CST, CST34156)

characteristic: chip antibody

text: Mus musculus

text: mouse ES cells

characteristic: strain

text: H2BK20ac (CST34156) ChIP in ESC


text: live

text: Generic

text: ES cells

text: H2BK20ac (CST, CST34156)

text: Mus musculus

text: mouse ES cells

text: H2BK20ac (CST34156) ChIP in ESC after NVP2 120min treatment rep1


text: live

text: Generic

text: ES cells

text: H2BK11ac (RevMAb, RM456)

text: Mus musculus

text: mouse ES cells

text: H2BK11ac ChIP in ESC rep1


Lizhu

text: Zhengzhou Fruit Research Institute

text: live

text: Plant

text: Lizhu

characteristic: cultivar

text: leaf

text: China

text: Prunus avium

text: leaf

characteristic: tissue

text: Plant sample from Prunus avium


characteristic: External Id

text: BIT Mesra Ranchi-835215

text: live

text: Microbe, viral or environmental

text: Type VI secretion system has so many effector proteins that are involved in antibacterial, anti-eukaryotic that properties can be further used in the development of antimicrobial therapy by engineering T6SS.

characteristic: description

text: India

text: soil

text: 23.4123 N 85.43 E

text: Enterobacter sp. S-16

characteristic: organism

text: pure culture

characteristic: sample-type

text: Metagenome or environmental sample from Enterobacter species


text: BIT Mesra Ranchi-835215

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: Gram-positive bacteria can also contain T6SS machinery with the effector proteins that can be used in the treatment of diseases by providing antimicrobial therapy by engineering T6SS in a suitable host.

text: India

text: soil

text: 23.4123 N 85.43 E

text: Paenibacillus sp. S-12

text: pure culture

text: Identification and Characterization of T6SS in Paenibacillus sp.

characteristic: title


Spodoptera frugiperda fat body HdIV FH1

text: INRAE

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Model organism or animal

text: Isabelle Darboux (INRAE, UMR 1333 DGIMI, France)

text: S. frugiperda larvae (corn strain) were maintained in the DGIMI laboratory for many years and reared on the Poitout artificiel diet (Poitout S et al, Ann Nutr Aliment 28: 173-187, 1974) at 25°C under a photoperiod of 16h light and 8h dark. Hyposoter didymator parasitoids, which carry the polydnaviral symbiont HdIV, were reared on S. frugiperda at 26°C with a 16h light and 8h dark photoperiod. HdIV was isolated from H. didymator ovaries as described previously (Clavijo G et al, PLoS One 6: e27522, 2011). Briefly, after dissection, ovaries were homogenized trough a 23-gauge needle. The cell suspension was then filtered through a 0.45-mm pore-size filter. HdIV preparation was used within 24h. HdIV were injected into fifth-instar S. frugiperda larvae (1-day-old). A viral suspension of 0.5 wasp-equivalent (weq) of HdIV was injected in each larva. One weq is defined as the amount of HdIV collected from the ovary of a single adult female. Fat body was dissected out under stereomicroscope, washed in PBS and transfered directly into the TRK lysis buffer. Samples were stored at -80°C until use. Total RNA was extracted using the E.Z.N.A.® total RNA kit I according to the manufacturer’s instructions (OMEGA). RNA samples were treated with TURBO DNA-free kit (Ambion) to eliminate potential genomic DNA contamination. RNA concentration and integrity were assessed using a NanoDrop ND-1000 spectrophotometer and an Agilent 2100 Bioanalyzer, respectively. Total RNA with RNA integrity (RIN) scores >= 9 were retained for RNA sequencing. For each replicate, total RNA was extracted from 34-79 HdIV-infected larvae.

text: larvae stage 5

text: HdIV

characteristic: infection

text: Spodoptera frugiperda

text: biological replicate 1

characteristic: replicate

text: tissue sample

text: corn

text: fat body

text: Spodoptera frugiperda fat body


Spodoptera frugiperda fat body HdIV FH2

text: INRAE

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: larvae stage 5

text: HdIV

text: Spodoptera frugiperda

text: biological replicate 2

text: tissue sample

text: corn

text: fat body

text: Spodoptera frugiperda fat body


Spodoptera frugiperda fat body HdIV FH3

text: INRAE

text: live

text: Model organism or animal

text: larvae stage 5

text: HdIV

text: Spodoptera frugiperda

text: biological replicate 3

text: tissue sample

text: corn

characteristic: strain

text: fat body

text: Spodoptera frugiperda fat body


Spodoptera frugiperda hemocyte HdIV HH1

text: INRAE

text: live

text: Model organism or animal

text: S. frugiperda larvae (corn strain) were maintained in the DGIMI laboratory for many years and reared on the Poitout artificiel diet (Poitout S et al, Ann Nutr Aliment 28: 173-187, 1974) at 25°C under a photoperiod of 16h light and 8h dark. Hyposoter didymator parasitoids, which carry the polydnaviral symbiont HdIV, were reared on S. frugiperda at 26°C with a 16h light and 8h dark photoperiod. HdIV was isolated from H. didymator ovaries as described previously (Clavijo G et al, PLoS One 6: e27522, 2011). Briefly, after dissection, ovaries were homogenized trough a 23-gauge needle. The cell suspension was then filtered through a 0.45-mm pore-size filter. HdIV preparation was used within 24h. HdIV was injected into fifth-instar S. frugiperda larvae (1-day-old). A viral suspension of 0.5 wasp-equivalent (weq) of HdIV were injected in each larva. One weq is defined as the amount of HdIV collected from the ovary of a single adult female. After collection of hemolymph, hemocytes were harvested by centrigugation at 800 x g for 5 min and washed in PBS. The cell pellet was then resuspended in the TRK lysis buffer of the E.Z.N.A.® total RNA kit I (OMEGA). Total RNA was extracted using the E.Z.N.A.® total RNA kit I according to the manufacturer’s instructions (OMEGA). RNA samples were treated with TURBO DNA-free kit (Ambion) to eliminate potential genomic DNA contamination. RNA concentration and integrity were assessed using a NanoDrop ND-1000 spectrophotometer and an Agilent 2100 Bioanalyzer, respectively. Total RNA with RNA integrity (RIN) scores >= 9 were retained for RNA sequencing. For each replicate, total RNA was extracted from 34-79 HdIV-infected larvae.

text: larvae stage 5

text: HdIV

text: Spodoptera frugiperda

text: biological replicate 1

text: tissue sample

text: corn

text: hemocyte

characteristic: tissue

text: Spodoptera frugiperda hemocyte


Spodoptera frugiperda hemocyte HdIV HH2

characteristic: External Id

text: INRAE

text: live

text: Model organism or animal

text: larvae stage 5

text: HdIV

text: Spodoptera frugiperda

text: biological replicate 2

text: tissue sample

text: corn

text: hemocyte

text: Spodoptera frugiperda hemocyte


Spodoptera frugiperda hemocyte HdIV HH3

text: INRAE

text: live

text: Model organism or animal

characteristic: description

text: larvae stage 5

text: HdIV

text: Spodoptera frugiperda

text: biological replicate 3

text: tissue sample

text: corn

text: hemocyte

text: Spodoptera frugiperda hemocyte


Spodoptera frugiperda fat body JcDV FJ1

text: INRAE

text: live

text: Model organism or animal

text: S. frugiperda larvae (corn strain) were maintained in the DGIMI laboratory for many years and reared on the Poitout artificiel diet (Poitout S et al, Ann Nutr Aliment 28: 173-187, 1974) at 25°C under a photoperiod of 16h light and 8h dark. The JcDV stock was prepared as reported in Mutuel D et al (Virology 403: 137-144, 2010). In brief, S. frugiperda larvae were infected with JcDV by oral ingestion. After 7-10 days, JcDV was extracted from dead larvae, purified on salt density gradient, and then dialysed. JcDV concentration was estimated by quantitative PCR and expressed as « viral genome/ml » (vg/ml). The virus stock was maintained at -20°C until use. JcDV were injected into fifth-instar S. frugiperda larvae (1-day-old). A viral suspension of 7.2e10 vg of JcDV was injected in each larva. Mortality in JcDV-infected larvae was observed from 72h after infection. At this time, the mortality ranged between 20-36% in the three replicates. Only JcDV-infected larvae with low signs of pathogenesis were used for the preparation of RNAs in order to avoid RNA degradation. Fat body was dissected out under stereomicroscope, washed in PBS and transfered directly into the TRK lysis buffer. Samples were stored at -80°C until use. Total RNA was extracted using the E.Z.N.A.® total RNA kit I according to the manufacturer’s instructions (OMEGA). RNA samples were treated with TURBO DNA-free kit (Ambion) to eliminate potential genomic DNA contamination. RNA concentration and integrity were assessed using a NanoDrop ND-1000 spectrophotometer and an Agilent 2100 Bioanalyzer, respectively. Total RNA with RNA integrity (RIN) scores >= 9 were retained for RNA sequencing. For each replicate, total RNA was extracted from 50-58 JcDV-infected larvae.

text: larvae stage 5

text: JcDV

text: Spodoptera frugiperda

characteristic: organism

text: biological replicate 1

text: tissue sample

text: corn

text: fat body

text: Spodoptera frugiperda fat body


Spodoptera frugiperda fat body JcDV FJ2

text: INRAE

text: live

text: Model organism or animal

text: larvae stage 5

text: JcDV

text: Spodoptera frugiperda

text: biological replicate 2

text: tissue sample

text: corn

text: fat body

text: Spodoptera frugiperda fat body


Spodoptera frugiperda fat body JcDV FJ3

text: INRAE

text: live

text: Model organism or animal

text: larvae stage 5

text: JcDV

text: Spodoptera frugiperda

text: biological replicate 3

text: tissue sample

text: corn

text: fat body

text: Spodoptera frugiperda fat body


Spodoptera frugiperda hemocyte JcDV HJ1

text: INRAE

text: live

text: Model organism or animal

text: S. frugiperda larvae (corn strain) were maintained in the DGIMI laboratory for many years and reared on the Poitout artificiel diet (Poitout S et al, Ann Nutr Aliment 28: 173-187, 1974) at 25°C under a photoperiod of 16h light and 8h dark. The JcDV stock was prepared as reported in Mutuel D et al (Virology 403: 137-144, 2010). In brief, S. frugiperda larvae were infected with JcDV by oral ingestion. After 7-10 days, JcDV was extracted from dead larvae, purified on salt density gradient, and then dialysed. JcDV concentration was estimated by quantitative PCR and expressed as « viral genome/ml » (vg/ml). The virus stock was maintained at -20°C until use. JcDV was injected into fifth-instar S. frugiperda larvae (1-day-old). A viral suspension of 7.2e10 vg of JcDV was injected in each larva. Mortality in JcDV-infected larvae was observed from 72h after infection. At this time, the mortality ranged between 20-36% in the three replicates. Only JcDV-infected larvae with low signs of pathogenesis were used for the preparation of RNAs in order to avoid RNA degradation. After collection of hemolymph, hemocytes were harvested by centrigugation at 800 x g for 5 min and washed in PBS. The cell pellet was then resuspended in the TRK lysis buffer of the E.Z.N.A.® total RNA kit I (OMEGA). Total RNA was extracted using the E.Z.N.A.® total RNA kit I according to the manufacturer’s instructions (OMEGA). RNA samples were treated with TURBO DNA-free kit (Ambion) to eliminate potential genomic DNA contamination. RNA concentration and integrity were assessed using a NanoDrop ND-1000 spectrophotometer and an Agilent 2100 Bioanalyzer, respectively. Total RNA with RNA integrity (RIN) scores >= 9 were retained for RNA sequencing. For each replicate, total RNA was extracted from 50-58 JcDV-infected larvae.

text: larvae stage 5

text: JcDV

text: Spodoptera frugiperda

text: biological replicate 1

text: tissue sample

text: corn

text: hemocyte

text: Spodoptera frugiperda hemocyte


Spodoptera frugiperda hemocyte JcDV HJ2

text: INRAE

text: live

text: Model organism or animal

text: larvae stage 5

text: JcDV

text: Spodoptera frugiperda

text: biological replicate 2

text: tissue sample

text: corn

text: hemocyte

text: Spodoptera frugiperda hemocyte


Spodoptera frugiperda hemocyte JcDV HJ3

text: INRAE

text: live

text: Model organism or animal

text: larvae stage 5

text: JcDV

text: Spodoptera frugiperda

text: biological replicate 3

text: tissue sample

text: corn

text: hemocyte

text: Spodoptera frugiperda hemocyte


Spodoptera frugiperda fat body PBS FP1

text: INRAE

text: live

text: Model organism or animal

text: S. frugiperda larvae (corn strain) were maintained in the DGIMI laboratory for many years and reared on the Poitout artificiel diet (Poitout S et al, Ann Nutr Aliment 28: 173-187, 1974) at 25°C under a photoperiod of 16h light and 8h dark. Mock-infected larvae were injected with an equivalent volume of Phosphate-buffered alone (PBS). Three days after injection, fat body was dissected out under stereomicroscope, washed in PBS and transfered directly into the TRK lysis buffer. Samples were stored at -80°C until use. Total RNA was extracted using the E.Z.N.A.® total RNA kit I according to the manufacturer’s instructions (OMEGA). RNA samples were treated with TURBO DNA-free kit (Ambion) to eliminate potential genomic DNA contamination. RNA concentration and integrity were assessed using a NanoDrop ND-1000 spectrophotometer and an Agilent 2100 Bioanalyzer, respectively. Total RNA with RNA integrity (RIN) scores >= 9 were retained for RNA sequencing. For each replicate, total RNA was extracted from 25-28 control larvae.

text: larvae stage 5

text: PBS

text: Spodoptera frugiperda

text: biological replicate 1

text: tissue sample

text: corn

text: fat body

text: Spodoptera frugiperda fat body


Spodoptera frugiperda fat body PBS FP2

text: INRAE

text: live

text: Model organism or animal

text: larvae stage 5

text: PBS

text: Spodoptera frugiperda

text: biological replicate 2

text: tissue sample

text: corn

text: fat body

text: Spodoptera frugiperda fat body


Spodoptera frugiperda fat body PBS FP3

text: INRAE

text: live

text: Model organism or animal

text: larvae stage 5

text: PBS

text: Spodoptera frugiperda

text: biological replicate 3

text: tissue sample

text: corn

text: fat body

text: Spodoptera frugiperda fat body


Spodoptera frugiperda hemocyte PBS HP1

text: INRAE

text: live

text: Model organism or animal

text: S. frugiperda larvae (corn strain) were maintained in the DGIMI laboratory for many years and reared on the Poitout artificiel diet (Poitout S et al, Ann Nutr Aliment 28: 173-187, 1974) at 25°C under a photoperiod of 16h light and 8h dark. Mock-infected larvae were injected with an equivalent volume of Phosphate-buffered alone (PBS). Hemolymph was collected 72h after injection. Hemocytes were harvested by centrigugation at 800 x g for 5 min and washed in PBS. The cell pellet was then resuspended in the TRK lysis buffer of the E.Z.N.A.® total RNA kit I (OMEGA). Total RNA was extracted using the E.Z.N.A.® total RNA kit I according to the manufacturer’s instructions (OMEGA). RNA samples were treated with TURBO DNA-free kit (Ambion) to eliminate potential genomic DNA contamination. RNA concentration and integrity were assessed using a NanoDrop ND-1000 spectrophotometer and an Agilent 2100 Bioanalyzer, respectively. Total RNA with RNA integrity (RIN) scores >= 9 were retained for RNA sequencing. For each replicate, total RNA was extracted from 25-28 control larvae.

text: larvae stage 5

text: PBS

text: Spodoptera frugiperda

text: biological replicate 1

text: tissue sample

text: corn

text: hemocyte

text: Spodoptera frugiperda hemocyte


Spodoptera frugiperda hemocyte PBS HP2

text: INRAE

text: live

text: Model organism or animal

text: larvae stage 5

text: PBS

text: Spodoptera frugiperda

text: biological replicate 2

text: tissue sample

text: corn

text: hemocyte

text: Spodoptera frugiperda hemocyte


Spodoptera frugiperda hemocyte PBS HP3

text: INRAE

text: live

text: Model organism or animal

text: larvae stage 5

text: PBS

text: Spodoptera frugiperda

text: biological replicate 3

text: tissue sample

text: corn

text: hemocyte

text: Spodoptera frugiperda hemocyte


Lantana camara

text: National Centre for Biological Sciences

text: live

text: Plant

text: Flowering

text: India:Bengaluru

text: Garden variety

characteristic: isolate

text: Lantana camara

text: Leaf

text: Plant sample from Lantana camara


Oreocharis qianyuensis

text: Guangxi Institute of Botany

characteristic: INSDC center name

text: live

text: Plant

text: Flowering and fruiting stage

text: China: Guizhou

text: on rock walls

text: Oreocharis qianyuensis

text: leaves

text: Plant sample from Oreocharis qianyuensis


text: Nanjing Agricultural University

text: live

text: Microbe, viral or environmental

text: China: anhui

text: avian

characteristic: host

text: Escherichia coli

text: mixed cultute

text: Microbe sample from Escherichia coli


text: Jiangsu Open University

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: China

text: Paddy soil

text: soil

text: 32.06 N 118.82 E

text: soil metagenome

text: Metagenome or environmental sample from soil metagenome

characteristic: title


THP1 macrophage RNAseq

text: University of Macau, Avenida da Universidade, Taipa, Macau SAR, China

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Human

text: ATCC

text: Macrophage

text: Homo sapiens

text: Human sample from Homo sapiens


text: Sir Run Run Shaw Hospital

text: live

text: Generic

text: Mus

text: Blood

text: BALB/c

text: blood

text: scivMSC

characteristic: treatment


text: Sir Run Run Shaw Hospital

characteristic: INSDC secondary accession

text: live

text: Generic

text: Mus

text: Blood

text: BALB/c

text: blood

text: scMSC


text: Sir Run Run Shaw Hospital

text: live

characteristic: INSDC status

text: Generic

text: Mus

text: Blood

text: BALB/c

text: blood

text: 0.5% DNCB solution


text: Sir Run Run Shaw Hospital

text: live

text: Generic

characteristic: NCBI submission model

text: Mus

text: Blood

text: BALB/c

text: blood

text: vehicle only (acetone: olive oil = 3:1 v/v)


text: Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College

text: live

text: Generic

characteristic: NCBI submission package

text: esophageal squamous cell carcinoma cells

characteristic: cell type

text: Homo sapiens

text: KYSE450 cells

text: siOTUD6B_2 rep3

text: transfected with siOTUD6B


text: live

text: Generic

text: Homo sapiens

text: KYSE450 cells

text: siOTUD6B_2 rep2

text: transfected with siOTUD6B


text: live

text: Generic

text: Homo sapiens

text: KYSE450 cells

text: siOTUD6B_2 rep1

text: transfected with siOTUD6B


text: live

text: Generic

text: Homo sapiens

text: KYSE450 cells

text: NC_2 rep3

text: transfected with negative control


text: live

text: Generic

text: Homo sapiens

text: KYSE450 cells

text: NC_2 rep2

text: transfected with negative control


text: live

text: Generic

text: Homo sapiens

text: KYSE450 cells

text: NC_2 rep1

text: transfected with negative control


text: live

text: Generic

text: Homo sapiens

text: KYSE30 cells

text: siOTUD6B_1 rep3

text: transfected with siOTUD6B


text: live

text: Generic

text: Homo sapiens

text: KYSE30 cells

text: siOTUD6B_1 rep2

text: transfected with siOTUD6B


text: live

text: Generic

text: Homo sapiens

text: KYSE30 cells

text: siOTUD6B_1 rep1

text: transfected with siOTUD6B


text: live

text: Generic

text: Homo sapiens

text: KYSE30 cells

text: NC_1 rep3

text: transfected with negative control


text: live

text: Generic

text: Homo sapiens

text: KYSE30 cells

text: NC_1 rep2

text: transfected with negative control


text: live

text: Generic

text: Homo sapiens

text: KYSE30 cells

text: NC_1 rep1

text: transfected with negative control


leaves of Veronica peregrina L.

text: Huanggang Normal University

text: live

text: Plant

text: adult

characteristic: age

text: China: Hubei, Xishui

text: wild plant

text: Veronica peregrina

text: leaves

characteristic: tissue

text: Plant sample from Veronica peregrina


leaves of Veronica didyma

characteristic: External Id

text: Huanggang Normal University

text: live

text: Plant

text: adult

text: China: Hubei, Huangzhou

text: wild plant

text: Veronica polita

text: leaves

text: Plant sample from Veronica didyma Tenore


leaves of Veronica arvensis L.

text: Huanggang Normal University

text: live

text: Plant

text: adult

text: China: Hubei, Xishui

text: wild plant

text: Veronica arvensis

characteristic: organism

text: leaves

text: Plant sample from Veronica arvensis L.


leaves of Veronica undulata Wall.

text: Huanggang Normal University

text: live

text: Plant

text: adult

text: China: Hubei, Huangzhou

text: wild plant

characteristic: isolate

text: Veronica undulata

text: leaves

text: Plant sample from Veronica undulata Wall.


text: Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation

characteristic: INSDC center name

text: live

text: Metagenome or environmental

text: China

text: not collected

text: compost

text: 40.05 N 110.46 E

text: compost metagenome

text: Metagenome or environmental sample from compost metagenome


text: Telethon Institute of Genetics and Medicine (TIGEM)

text: live

text: Generic

text: colorectal

characteristic: genotype

text: Homo sapiens

text: Colorectal cancer stem-like cells (Colorectosphere)


text: live

text: Generic

characteristic: SRA accession

text: colorectal

text: WT

text: Homo sapiens


text: Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institute of Health

text: live

text: Generic

text: Wild-type

text: Homo sapiens

text: Human TSC

text: Human TSC

text: hTSC, unstimulated, RNA-Seq, rep2

characteristic: title


characteristic: INSDC first public

text: live

text: Generic

text: Wild-type

text: Homo sapiens

text: Human TSC

text: Human TSC

text: hTSC, unstimulated, RNA-Seq, rep1


characteristic: INSDC last update

text: live

text: Generic

text: Wild-type

text: Homo sapiens

text: Human TSC

text: Human TSC

text: hTSC, IFN-gamma stimulated, RNA-Seq, rep2


text: live

text: Generic

text: Wild-type

text: Homo sapiens

text: Human TSC

text: Human TSC

text: hTSC, IFN-gamma stimulated, RNA-Seq, rep1


text: Department of Molecular Oncology, Chiba University

text: live

text: Generic

text: Nasophryngeal epithelial cell line

text: H3K27ac_ChIP (Millipore, 05-1334, lot 2768425)

characteristic: chip antibody

text: Homo sapiens

text: Nasophryngeal epithelial cell line


characteristic: INSDC secondary accession

text: live

text: Generic

text: Nasophryngeal epithelial cell line

text: H3K4me3_ChIP (Active Motif, 39159, lot 25817005)

text: Homo sapiens

text: Nasophryngeal epithelial cell line


text: live

characteristic: INSDC status

text: Generic

text: Wild-type

text: Homo sapiens

text: Human TSC

text: Human TSC

text: hTSC, unstimulated, Input


text: live

text: Generic

characteristic: NCBI submission model

text: Wild-type

text: Homo sapiens

text: Human TSC

text: Human TSC

text: hTSC, IFN-gamma stimulated, Input


text: live

text: Generic

characteristic: NCBI submission package

text: Abcam, ab4729

characteristic: antibody

text: Wild-type

text: Homo sapiens

text: Human TSC

text: Human TSC

text: hTSC, unstimulated, H3K27ac, rep2


text: live

text: Generic

text: Abcam, ab4729

text: Wild-type

text: Homo sapiens

text: Human TSC

text: Human TSC

text: hTSC, unstimulated, H3K27ac, rep1


text: live

text: Generic

text: Abcam, ab4729

text: Wild-type

text: Homo sapiens

text: Human TSC

text: Human TSC

text: hTSC, IFN-gamma stimulated, H3K27ac, rep2


text: live

text: Generic

text: Abcam, ab4729

text: Wild-type

text: Homo sapiens

text: Human TSC

text: Human TSC

text: hTSC, IFN-gamma stimulated, H3K27ac, rep1


Initial soil

text: Federal University of Technology Akure Nigeria

text: live

text: MIMARKS.survey

text: 10 cm

characteristic: depth

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: 32 m

characteristic: elev

text: Soil naturally before dumping facemaks

text: Initial condition of soil

text: soil

text: Nigeria: Akure

text: 8.1 N 15.2 E

text: soil metagenome

text: 0 month


Soil after 3 months

characteristic: External Id

text: live

text: MIMARKS.survey

text: 10 cm

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: 32 m

text: Soil around dumped medical facemasks

text: 3 months after dumping of facemasks

text: soil

text: Nigeria: Akure

text: 8.1 N 15.2 E

text: soil metagenome

characteristic: organism

text: 3 months


Soil after 6 months

characteristic: INSDC center name

text: live

text: MIMARKS.survey

text: 10 cm

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: 32 m

text: Soil around dumped medical facemasks

text: 6 months after dumping of facemasks

text: soil

text: Nigeria: Akure

text: 8.1 N 15.2 E

text: soil metagenome

text: 6 months


Soil after 9 months

text: live

text: MIMARKS.survey

text: 10 cm

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: 32 m

text: Soil around dumped medical facemasks

text: 9 months after dumping of facemasks

text: soil

text: Nigeria: Akure

text: 8.1 N 15.2 E

text: soil metagenome

text: 9 months


text: McMaster University

text: live

text: Metagenome or environmental

characteristic: SampleID

text: Low

text: Canada: Hamilton

text: Mus musculus

characteristic: host

text: feces

text: 45.3 N 79.9 W

text: metagenome

text: Metagenome or environmental sample from metagenome


text: McMaster University

text: live

text: Metagenome or environmental

characteristic: SRA accession

text: High

text: Canada: Hamilton

text: Mus musculus

text: feces

text: 45.3 N 79.9 W

text: metagenome

characteristic: title


text: McMaster University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: Dlow

text: Canada: Hamilton

text: Mus musculus

text: feces

text: 45.3 N 79.9 W

text: metagenome


text: McMaster University

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Dhigh

text: Canada: Hamilton

text: Mus musculus

text: feces

text: 45.3 N 79.9 W

text: metagenome


text: McMaster University

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Dhigh

text: Canada: Hamilton

text: feces

text: 45.3 N 79.9 W

text: metagenome


text: McMaster University

text: live

text: Metagenome or environmental

characteristic: NCBI submission model

text: Dlow

text: Canada: Hamilton

text: feces

text: 45.3 N 79.9 W

text: metagenome


text: McMaster University

text: live

text: Metagenome or environmental

characteristic: NCBI submission package

text: Alow

text: Canada: Hamilton

text: feces

text: 45.3 N 79.9 W

text: metagenome


text: McMaster University

text: live

text: Metagenome or environmental

text: Ahigh

text: Canada: Hamilton

text: feces

text: 45.3 N 79.9 W

text: metagenome


text: Cosgrove Laboratory, Biomedical Engineering, Cornell University

text: live

text: Generic

characteristic: cell line

text: Human diffuse large B-cell lymphoma

characteristic: cell type

text: Homo sapiens

text: 4 days organoid culture

characteristic: time

text: RGD; Co-culture with CD40L+ cells

characteristic: treatment


characteristic: External Id

text: live

text: Generic

text: Human diffuse large B-cell lymphoma

text: Homo sapiens

text: 4 days organoid culture

text: RGD Matrix; No co-culture


text: live

text: Generic

text: Human diffuse large B-cell lymphoma

text: Homo sapiens

characteristic: organism

text: 4 days organoid culture

text: REDV Matrix; Co-culture with CD40L+ cells


characteristic: INSDC center name

text: live

text: Generic

text: Human diffuse large B-cell lymphoma

text: Homo sapiens

text: 4 days organoid culture

text: REDV Matrix; No co-culture


text: live

text: Generic

text: Human diffuse large B-cell lymphoma

text: Homo sapiens

text: 4 days organoid culture

text: GFO Matrix;Co-culture with CD40L+ cells


text: live

text: Generic

text: Human diffuse large B-cell lymphoma

text: Homo sapiens

text: 4 days organoid culture

text: GFO Matrix; No co-culture


text: Case Lab, Psychiatry and Behavioral Sciences, Texas A&M University

text: live

text: Generic

text: Splenocytes

text: S100a9-/- C57Bl6/J

characteristic: genotype

text: Mus musculus

text: Spleen

text: Spleen

characteristic: tissue

text: KO, stress, mouse 3 [Case_12_S12]

text: Repeated social defeat stress


text: live

text: Generic

characteristic: SRA accession

text: Splenocytes

text: S100a9-/- C57Bl6/J

text: Mus musculus

text: Spleen

text: Spleen

text: KO, stress, mouse 2 [Case_11_S11]

text: Repeated social defeat stress


text: live

text: Generic

text: Splenocytes

text: S100a9-/- C57Bl6/J

text: Mus musculus

text: Spleen

text: Spleen

text: KO, stress, mouse 1 [Case_10_S10]

characteristic: title

text: Repeated social defeat stress


characteristic: INSDC first public

text: live

text: Generic

text: Splenocytes

text: Mus musculus

text: Spleen

text: Spleen

text: WT, stress, mouse 3 [Case_9_S9]

text: Repeated social defeat stress


characteristic: INSDC last update

text: live

text: Generic

text: Splenocytes

text: Mus musculus

text: Spleen

text: Spleen

text: WT, stress, mouse 2 [Case_8_S8]

text: Repeated social defeat stress


characteristic: INSDC secondary accession

text: live

text: Generic

text: Splenocytes

text: Mus musculus

text: Spleen

text: Spleen

text: WT, stress, mouse 1 [Case_7_S7]

text: Repeated social defeat stress


text: live

characteristic: INSDC status

text: Generic

text: Splenocytes

text: S100a9-/- C57Bl6/J

text: Mus musculus

text: Spleen

text: Spleen

text: KO, control, mouse 3 [Case_6_S6]

text: No stress


text: live

text: Generic

characteristic: NCBI submission model

text: Splenocytes

text: S100a9-/- C57Bl6/J

text: Mus musculus

text: Spleen

text: Spleen

text: KO, control, mouse 2 [Case_5_S5]

text: No stress


text: live

text: Generic

characteristic: NCBI submission package

text: Splenocytes

text: S100a9-/- C57Bl6/J

text: Mus musculus

text: Spleen

text: Spleen

text: KO, control, mouse 1 [Case_4_S4]

text: No stress


text: live

text: Generic

text: Splenocytes

text: Mus musculus

text: Spleen

text: Spleen

text: WT, control, mouse 3 [Case_3_S3]

text: No stress


text: live

text: Generic

text: Splenocytes

text: Mus musculus

text: Spleen

text: Spleen

text: WT, control, mouse 2 [Case_2_S2]

text: No stress


text: live

text: Generic

text: Splenocytes

text: Mus musculus

text: Spleen

text: Spleen

text: WT, control, mouse 1 [Case_1_S1]

text: No stress


text: Molecular Neurogenetics, Wallenberg Neuroscience Center, Lund University

text: live

text: Generic

text: male

characteristic: Sex

characteristic: age

text: control

characteristic: condition

text: Homo sapiens

text: brain

text: brain

text: Control 529, frontal lobe, bulk RNAseq


text: live

text: Generic

text: male

text: control

text: Homo sapiens

text: brain

text: brain

text: Control 502, frontal lobe, bulk RNAseq


text: live

text: Generic

text: male

text: control

text: Homo sapiens

text: brain

text: brain

text: Control 501, frontal lobe, bulk RNAseq


text: live

text: Generic

text: male

text: control

text: Homo sapiens

text: brain

text: brain

text: Control 502, temporal lobe, scRNAseq


text: live

text: Generic

text: male

text: control

text: Homo sapiens

text: brain

text: brain

text: Control 529, temporal lobe, scRNAseq


text: live

text: Generic

text: male

text: control

text: Homo sapiens

text: brain

text: brain

text: Control 529, frontal lobe, scRNAseq


text: live

text: Generic

text: male

text: control

text: Homo sapiens

text: brain

text: brain

text: Control 501, temporal lobe, scRNAseq


text: live

text: Generic

text: male

text: control

text: Homo sapiens

text: brain

text: brain

text: Control 501, frontal lobe, scRNAseq


text: Virginia Division of Consolidated Laboratory Services Sequencing Submission Group

text: live

text: SARS-CoV-2: wastewater surveillance

text: 06:30 - 06:30

text: innovaprep ultrafiltration

text: SARS-CoV-2 Standard spiked with MHV

text: zymo quick-rna viral kit

text: USA: Virginia

text: wastewater

text: wastewater metagenome

text: GenomeTrakr; LFFM ww project

text: public health surveillance community-level

text: diversity of mutations across entire genome

text: Concentrating pipette

text: SARS-CoV-2: wastewater surveillance

text: population of jurisdiction encompassing the wastewater service area

text: post grit removal

text: wastewater treatment plant

text: composite

text: VA

text: copies/L

text: N gene (N2)

text: no

text: ddPCR detection of SARS-CoV-2 using the BioRad PREvalence Kit on the BioRad QXOne

text: copies/L

text: E gene (orf4)

text: no


text: live

text: SARS-CoV-2: wastewater surveillance

text: Virginia Division of Consolidated Laboratory Services

text: 06:30 - 06:30

text: innovaprep ultrafiltration

text: SARS-CoV-2 Standard spiked with MHV

text: zymo quick-rna viral kit

text: USA: Virginia

text: wastewater

text: wastewater metagenome

text: GenomeTrakr; LFFM ww project

text: Concentrating pipette

text: SARS-CoV-2: wastewater surveillance

text: post grit removal

text: wastewater treatment plant

text: composite

text: VA

text: copies/L

text: N gene (N2)

text: no

text: copies/L

text: E gene (orf4)

text: no


text: live

text: SARS-CoV-2: wastewater surveillance

text: 06:30 - 06:30

text: innovaprep ultrafiltration

text: SARS-CoV-2 Standard spiked with MHV

text: zymo quick-rna viral kit

text: USA: Virginia

text: wastewater

text: wastewater metagenome

text: GenomeTrakr; LFFM ww project

text: Concentrating pipette

text: SARS-CoV-2: wastewater surveillance

text: post grit removal

text: wastewater treatment plant

text: composite

text: VA

text: copies/L

text: N gene (N2)

text: no

text: copies/L

text: E gene (orf4)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: 06:30 - 06:30

text: innovaprep ultrafiltration

text: SARS-CoV-2 Standard spiked with MHV

text: zymo quick-rna viral kit

text: USA: Virginia

text: wastewater

text: wastewater metagenome

text: GenomeTrakr; LFFM ww project

text: Concentrating pipette

text: SARS-CoV-2: wastewater surveillance

text: post grit removal

text: wastewater treatment plant

text: composite

text: VA

text: copies/L

text: N gene (N2)

text: yes

text: copies/L

text: E gene (orf4)

text: yes


text: live

text: SARS-CoV-2: wastewater surveillance

text: 06:30 - 06:30

text: innovaprep ultrafiltration

text: SARS-CoV-2 Standard spiked with MHV

text: zymo quick-rna viral kit

text: USA: Virginia

text: wastewater

text: wastewater metagenome

text: GenomeTrakr; LFFM ww project

text: Concentrating pipette

text: SARS-CoV-2: wastewater surveillance

text: post grit removal

text: wastewater treatment plant

text: composite

text: VA

text: copies/L

text: N gene (N2)

text: yes

text: copies/L

text: E gene (orf4)

text: yes


characteristic: Collection Time (Number of Weeks since Infection)

text: Vagina

characteristic: Genital Tract Region

text: University of California, Merced

text: live

characteristic: Infection Time

text: Infection

characteristic: Infection or Control

text: Microbe, viral or environmental

characteristic: Replicate

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 1 in ZT15_I group at the second time point (1 week post infection)

characteristic: description

text: USA:Atlanta, GA

text: Mus musculus

characteristic: host

text: Vaginal Swab

text: GGBC

text: Nigg

characteristic: isolate

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: strain

characteristic: temp

text: RNA-Seq of mus musculus: female vaginal swab


characteristic: External Id

text: Vagina

text: University of California, Merced

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Infection

text: Microbe, viral or environmental

characteristic: SRA accession

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 2 in ZT15_I group at the second time point (1 week post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

characteristic: organism

text: 16S DNA

text: C. muridarum

characteristic: title


characteristic: Collection Time (Number of Weeks since Infection)

text: Vagina

characteristic: Genital Tract Region

text: University of California, Merced

text: live

characteristic: INSDC status

text: Infection

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 3 in ZT15_I group at the second time point (1 week post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum


text: Vagina

text: University of California, Merced

text: live

characteristic: Infection Time

text: Infection

characteristic: Infection or Control

text: Microbe, viral or environmental

characteristic: Replicate

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 4 in ZT15_I group at the second time point (1 week post infection)

characteristic: description

text: USA:Atlanta, GA

text: Mus musculus

characteristic: host

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum


characteristic: External Id

text: Vagina

text: University of California, Merced

characteristic: INSDC center name

text: live

text: Infection

text: Microbe, viral or environmental

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 5 in ZT15_I group at the second time point (1 week post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

characteristic: isolate

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: strain

characteristic: temp


text: Vagina

text: University of California, Merced

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Infection

text: Microbe, viral or environmental

characteristic: SRA accession

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 6 in ZT15_I group at the second time point (1 week post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

characteristic: organism

text: 16S DNA

text: C. muridarum


characteristic: Collection Time (Number of Weeks since Infection)

text: Vagina

characteristic: Genital Tract Region

text: University of California, Merced

text: live

characteristic: INSDC status

text: Infection

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 7 in ZT15_I group at the second time point (1 week post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: title


text: Vagina

text: University of California, Merced

text: live

characteristic: Infection Time

text: Infection

characteristic: Infection or Control

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: Replicate

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 1 in ZT15_I group at the third time point (2 weeks post infection)

characteristic: description

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum


characteristic: External Id

text: Vagina

text: University of California, Merced

characteristic: INSDC center name

text: live

text: Infection

text: Microbe, viral or environmental

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 2 in ZT15_I group at the third time point (2 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

characteristic: host

text: Vaginal Swab

text: GGBC

text: Nigg

characteristic: isolate

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: strain


text: Vagina

text: University of California, Merced

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Infection

text: Microbe, viral or environmental

characteristic: SRA accession

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 3 in ZT15_I group at the third time point (2 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: temp


characteristic: Collection Time (Number of Weeks since Infection)

text: Vagina

characteristic: Genital Tract Region

text: University of California, Merced

text: live

characteristic: INSDC status

text: Infection

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 4 in ZT15_I group at the third time point (2 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

characteristic: organism

text: 16S DNA

text: C. muridarum


text: Vagina

text: University of California, Merced

text: live

characteristic: Infection Time

text: Infection

characteristic: Infection or Control

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: Replicate

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 5 in ZT15_I group at the third time point (2 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: title


characteristic: External Id

text: Vagina

text: University of California, Merced

characteristic: INSDC center name

text: live

text: Infection

text: Microbe, viral or environmental

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 6 in ZT15_I group at the third time point (2 weeks post infection)

characteristic: description

text: USA:Atlanta, GA

text: Mus musculus

characteristic: host

text: Vaginal Swab

text: GGBC

text: Nigg

characteristic: isolate

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum


text: Vagina

text: University of California, Merced

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Infection

text: Microbe, viral or environmental

characteristic: SRA accession

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 7 in ZT15_I group at the third time point (2 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: strain


characteristic: Collection Time (Number of Weeks since Infection)

text: Vagina

characteristic: Genital Tract Region

text: University of California, Merced

text: live

characteristic: INSDC status

text: Infection

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 1 in ZT15_I group at the forth time point (3 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: temp


text: Vagina

text: University of California, Merced

text: live

characteristic: Infection Time

text: Infection

characteristic: Infection or Control

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: Replicate

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 2 in ZT15_I group at the forth time point (3 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

characteristic: organism

text: 16S DNA

text: C. muridarum


characteristic: External Id

text: Vagina

text: University of California, Merced

characteristic: INSDC center name

text: live

text: Infection

text: Microbe, viral or environmental

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 3 in ZT15_I group at the forth time point (3 weeks post infection)

characteristic: description

text: USA:Atlanta, GA

text: Mus musculus

characteristic: host

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: title


text: Vagina

text: University of California, Merced

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Infection

text: Microbe, viral or environmental

characteristic: SRA accession

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 4 in ZT15_I group at the forth time point (3 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

characteristic: isolate

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

text: RNA-Seq of mus musculus: female vaginal swab


characteristic: Collection Time (Number of Weeks since Infection)

text: Vagina

characteristic: Genital Tract Region

text: University of California, Merced

text: live

characteristic: INSDC status

text: Infection

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 5 in ZT15_I group at the forth time point (3 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: strain


text: Vagina

text: University of California, Merced

text: live

characteristic: Infection Time

text: Infection

characteristic: Infection or Control

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: Replicate

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 6 in ZT15_I group at the forth time point (3 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: temp


characteristic: External Id

text: Vagina

text: University of California, Merced

characteristic: INSDC center name

text: live

text: Infection

text: Microbe, viral or environmental

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 7 in ZT15_I group at the forth time point (3 weeks post infection)

characteristic: description

text: USA:Atlanta, GA

text: Mus musculus

characteristic: host

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

characteristic: organism

text: 16S DNA

text: C. muridarum


text: Vagina

text: University of California, Merced

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Infection

text: Microbe, viral or environmental

characteristic: SRA accession

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 1 in ZT15_I group at the fifth time point (5 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: title


characteristic: Collection Time (Number of Weeks since Infection)

text: Vagina

characteristic: Genital Tract Region

text: University of California, Merced

text: live

characteristic: INSDC status

text: Infection

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 2 in ZT15_I group at the fifth time point (5 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

characteristic: isolate

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum


text: Vagina

text: University of California, Merced

text: live

characteristic: Infection Time

text: Infection

characteristic: Infection or Control

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: Replicate

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 3 in ZT15_I group at the fifth time point (5 weeks post infection)

text: USA:Atlanta, GA

text: Mus musculus

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: strain


characteristic: External Id

text: Vagina

text: University of California, Merced

characteristic: INSDC center name

text: live

text: Infection

text: Microbe, viral or environmental

text: Omosun Lab

text: Omosun Lab

text: Vaginal swab sample for mouse 4 in ZT15_I group at the fifth time point (5 weeks post infection)

characteristic: description

text: USA:Atlanta, GA

text: Mus musculus

characteristic: host

text: Vaginal Swab

text: GGBC

text: Nigg

text: Taconic

text: 33.7428 N 84.4120 W

text: Chlamydia

text: 16S DNA

text: C. muridarum

characteristic: temp