status: PUBLIC

characteristic: External Id

text: Medicine / Division of Infectious Diseases, University of North Carolina

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: USA

characteristic: geo loc name

text: Homo sapiens

characteristic: host

text: Escherichia coli

characteristic: organism

text: Sequence analysis of clinical isolates

characteristic: project name

characteristic: sample name

characteristic: strain

text: Genome of multidrug-resistant Escherichia coli strain HE-MDREc32

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: USA

text: Homo sapiens

text: Escherichia coli

text: Sequence analysis of clinical isolates

text: Genome of multidrug-resistant Escherichia coli strain HE-MDREc33


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: USA

text: Homo sapiens

text: Escherichia coli

text: Sequence analysis of clinical isolates

text: Genome of multidrug-resistant Escherichia coli strain HE-MDREc34


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: USA

text: Homo sapiens

text: Escherichia coli

text: Sequence analysis of clinical isolates

text: Genome of multidrug-resistant Escherichia coli strain HE-MDREc35


text: live

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIGS:6.0

text: USA

text: Homo sapiens

text: Escherichia coli

text: Sequence analysis of clinical isolates

text: Genome of multidrug-resistant Escherichia coli strain HE-MDREc36


text: RIKEN Bioresource Center, Japan Collection of Microbes

text: live

text: MIMS.me.soil

characteristic: SRA accession

characteristic: collection date

text: 20-30 cm

characteristic: depth

text: Soil collected from tomato (cv. Momotaro) field

text: 2 m

characteristic: elev

text: tomato greenhouse

text: soil

text: Japan:Gifu

text: soil metagenome

text: Strategic Innovation Promotion Program


text: live

text: MIMS.me.soil

text: 40-50 cm

characteristic: description

text: 2 m

text: tomato greenhouse

text: soil

text: Japan:Gifu

characteristic: geo loc name

text: soil metagenome

characteristic: organism

text: Strategic Innovation Promotion Program


text: Environmental Risk Assessment Group, Department of Environmental Engineering, Kyoto University

text: live

text: MIGS.ba

text: This strain was isolated from a river water sample.

text: river

text: Japan

text: Escherichia coli

text: Whole-Genome Analysis of Antimicrobial-Resistant and Extraintestinal Pathogenic Escherichia coli in River Water

characteristic: project name

characteristic: sample name

characteristic: strain

text: Escherichia coli KKa012


characteristic: External Id

characteristic: INSDC center name

text: live

text: MIGS.ba

text: river

text: Japan

text: Escherichia coli

text: Escherichia coli KKa013

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: MIGS.ba

text: river

text: Japan

text: Escherichia coli

text: Escherichia coli KKa014


text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

characteristic: NCBI submission package

text: river

text: Japan

text: Escherichia coli

text: Escherichia coli KKa015


text: live

text: MIGS.ba

characteristic: SRA accession

text: river

text: Japan

text: Escherichia coli

text: Escherichia coli KKa016


text: Biological Resource Center, NITE (NBRC)

text: live

text: Generic

text: missing

text: missing

text: IFO 3557 <- Osaka Univ. (T. Harada)

characteristic: history

text: missing

characteristic: link

text: Heyndrickxia coagulans

text: NITE Biological Resource Center

characteristic: repository

text: NBRC 3557

text: cell culture

text: NBRC 3557

text: Bacillus coagulans NBRC 3557

text: non-type strain

text: Y

characteristic: validity


text: Biological Resource Center, NITE (NBRC)

text: live

text: Generic

text: missing

text: missing

text: IFO 3886 <- Yamanashi Univ. (O. Nakayama, P-22)

text: missing

text: Heyndrickxia coagulans

characteristic: organism

text: NITE Biological Resource Center

text: NBRC 3886

text: cell culture

text: NBRC 3886

text: Bacillus coagulans NBRC 3886

text: non-type strain

text: Y


text: Biological Resource Center, NITE (NBRC)

text: live

text: Generic

text: missing

text: missing

text: IFO 3887 <- Yamanashi Univ. (O. Nakayama, A-22)

text: missing

text: Heyndrickxia coagulans

text: NITE Biological Resource Center

text: NBRC 3887

text: cell culture

text: NBRC 3887

text: Bacillus coagulans NBRC 3887

text: non-type strain

text: Y


text: Biological Resource Center, NITE (NBRC)

text: live

text: Generic

text: ATCC 7050 ; BCRC 10606 ; CCM 2013 ; CCUG 7417 ; CFBP 4225 ; CIP 66.25 ; DSM 1 ; HAMBI 1931 ; IAM 1115 ; JCM 2257 ; LMG 6326 ; NCAIM B.01086 ; NCCB 48014 ; NCCB 77025 ; NCIB 9365 ; NCIMB 9365 ; NCTC 10334 ; NRIC 1005 ; NRRL NRS-609 ; VKM B-731

text: missing

text: missing

text: IFO 12583 <- IAM 115 <- ATCC 7050 <- USDA (N.R. Smith, 609) <- J.R. Porter <- B.W. Hammer

text: Evaporated milk

text: Heyndrickxia coagulans

text: NITE Biological Resource Center

text: NBRC 12583

text: cell culture

text: NBRC 12583

text: Bacillus coagulans NBRC 12583

text: type strain of Bacillus coagulans

characteristic: type-material

text: type strain

text: Y


text: Biological Resource Center, NITE (NBRC)

text: live

text: Generic

text: missing

text: missing

text: IFO 12714 <- Kobe Univ. (S. Yoshimura, HN-68)

text: soil

text: Heyndrickxia coagulans

text: NITE Biological Resource Center

text: NBRC 12714

text: cell culture

text: NBRC 12714

characteristic: strain

text: Bacillus coagulans NBRC 12714

text: non-type strain

text: Y


characteristic: External Id

text: Biological Resource Center, NITE (NBRC)

text: live

text: Generic

text: missing

text: Japan

text: Kyushu Univ. (K. Sakai, N1-3)

text: compost

text: Heyndrickxia coagulans

text: NITE Biological Resource Center

text: NBRC 106567

text: cell culture

text: Oita

text: NBRC 106567

text: Bacillus coagulans NBRC 106567

text: non-type strain

text: Y


text: Biological Resource Center, NITE (NBRC)

characteristic: INSDC center name

text: live

text: Generic

text: missing

text: Japan

text: Kyushu Univ. (K. Sakai, M-21)

text: flower

text: Heyndrickxia coagulans

text: NITE Biological Resource Center

text: NBRC 106568

text: cell culture

text: Oita

text: NBRC 106568

text: Bacillus coagulans NBRC 106568

text: non-type strain

text: Y


text: Biological Resource Center, NITE (NBRC)

text: live

text: Generic

text: InaCC B646

text: missing

text: Indonesia

text: LIPI (Rohmatussolihat) & NBRC (M. Miyashita), JSAT13-2-LAB014 <- LIPI (Rohmatussolihat, LIPI13-2-LAB014) <- LIPI (Rohmatussolihat) & NBRC (M. Miyashita), 55T06-1

text: Fermented soybean (Tauco)

text: Heyndrickxia coagulans

text: NITE Biological Resource Center

text: NBRC 112046

text: cell culture

text: Sukawati, Bali

text: NBRC 112046

text: Bacillus coagulans NBRC 112046

characteristic: title

text: non-type strain

text: Y


text: Fujian Academy of Agricultural Sciences

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: collection date

characteristic: culture-collection

text: USA: Wisconsin

characteristic: geo loc name

text: acidic Sphagnum peat bog

characteristic: isolation source

text: Heyndrickxia acidicola

text: cell culture

characteristic: sample type

text: DSM 14745

text: Microbe sample from Heyndrickxia acidicola

text: type strain of Bacillus acidicola

characteristic: type material


text: Wageningen UR

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DSM2314 replicate 1

characteristic: isolate

text: Heyndrickxia coagulans

text: Cell culture

text: Bacilli

text: without furfural quadruple 1


characteristic: External Id

text: Wageningen UR

text: live

text: Microbe, viral or environmental

text: DSM2314 replicate 2

text: Heyndrickxia coagulans

characteristic: organism

text: Cell culture

text: Bacilli

characteristic: strain

text: without furfural quadruple 2


text: Wageningen UR

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: DSM2314 replicate 3

text: Heyndrickxia coagulans

text: Cell culture

text: Bacilli

text: without furfural quadruple 3

characteristic: title


text: Wageningen UR

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: DSM2314 replicate 4

text: Heyndrickxia coagulans

text: Cell culture

text: Bacilli

text: without furfural quadruple 4


text: Wageningen UR

text: live

text: Microbe, viral or environmental

text: DSM2314 replicate 5

characteristic: isolation source

text: Heyndrickxia coagulans

text: Cell culture

text: Bacilli

text: with furfural quadruple 1


text: Wageningen UR

text: live

text: Microbe, viral or environmental

text: DSM2314 replicate 6

text: Heyndrickxia coagulans

text: Cell culture

characteristic: sample type

text: Bacilli

text: with furfural quadruple 2


text: Wageningen UR

text: live

text: Microbe, viral or environmental

text: DSM2314 replicate 7

text: Heyndrickxia coagulans

text: Cell culture

text: Bacilli

text: with furfural quadruple 3


text: Wageningen UR

text: live

text: Microbe, viral or environmental

text: DSM2314 replicate 8

text: Heyndrickxia coagulans

text: Cell culture

text: Bacilli

text: with furfural quadruple 4


tag: Namespace:DOE Joint Genome Institute

text: DOE Joint Genome Institute

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: Shouchella rhizosphaerae

text: SC-N012,DSM 21911,NCCB 100267

text: Bacillus rhizosphaerae SC-N012


text: DOE Joint Genome Institute

characteristic: INSDC last update

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

text: Shouchella lonarensis

text: Bacillus lonarensis 25nlg

text: type strain of Bacillus lonarensis

characteristic: type material


text: nanjing forest university

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: Transcription of Bacillus coagulans NL01 in different substrate concentration

text: China: Jiangsu, Nanjing

characteristic: geo loc name

text: soil

text: Heyndrickxia coagulans

text: cell culture

text: bacillus coagulans NL01

text: Microbe sample from bacillus coagulans NL01


text: nanjing forest university

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: China: Jiangsu, Nanjing

text: soil

text: Heyndrickxia coagulans

text: cell culture

text: bacillus coagulans NL01

text: Microbe sample from Heyndrickxia coagulans


characteristic: External Id

text: nanjing forest university

text: live

text: Microbe, viral or environmental

text: China: Jiangsu, Nanjing

text: soil

text: Heyndrickxia coagulans

characteristic: organism

text: cell culture

text: bacillus coagulans NL01


text: Beijing University of Agriculture

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: China

text: swine

characteristic: host

text: digestive tract of healthy swine

characteristic: isolation-source

text: Heyndrickxia coagulans

text: whole organism

characteristic: strain


text: nanjing forest university

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China: Jiangsu, Nanjing

text: soli

characteristic: isolation source

text: Heyndrickxia coagulans

text: cell culture

characteristic: title


DSM 18940

text: Fujian Academy of Agricultural Sciences

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: culture collection

text: Germany

text: soil

text: Shouchella oshimensis

text: cell culture

characteristic: sample type

text: DSM 18940

text: Microbe sample from Shouchella oshimensis

text: type strain of Bacillus oshimensis

characteristic: type material


DSM 16117

text: Fujian Academy of Agricultural Sciences

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: culture-collection

text: Germany

characteristic: geo loc name

text: soil

text: Shouchella patagoniensis

text: cell culture

text: DSM 16117

text: Microbe sample from Shouchella patagoniensis

text: type strain of Bacillus patagoniensis


TAKAHASHI

characteristic: External Id

text: Qilu university of technology

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: China:Tianjin

text: Shouchella clausii

characteristic: organism

text: pure culture

text: B.calusii strain obtained from Tianjin


50C pH 9

text: Donghua Univeristy

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: China:WWTP

text: Heyndrickxia coagulans

text: sludge

text: Firmicutes


B.acidicola 1487963899_883083

text: NIH

text: live

text: Microbe, viral or environmental

text: Japan

text: soil

text: Heyndrickxia acidicola

characteristic: strain


Bacillus clausii DSM 8716T

text: Kyungpook National University

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Whole genome sequencing and assembly of Bacillus clausii DSM 8716T

characteristic: description

text: Denmark

text: garden soil

text: Shouchella clausii

text: Single cell

text: DSM 8716

text: type strain of Bacillus clausii


text: USFDA

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

characteristic: collection date

text: USA:MD

text: Homo sapiens

characteristic: host

text: Commercial dietary supplements

characteristic: isolation source

text: Heyndrickxia coagulans

text: Single cell


text: UCAD

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: Sitor-Ndour

characteristic: collected by

text: Senegal:Bambey

text: Pearl millet

text: rhizosphere soil

characteristic: num

text: Oikeobacillus pervagus

text: cell culture

characteristic: sample type

characteristic: title


characteristic: External Id

text: Agharkar Research Institute

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: India: Maharashtra, Pune

characteristic: geo loc name

text: commercial food preparation

text: Heyndrickxia coagulans

text: whole organism


text: Agharkar Research Institute

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: India: Maharashtra, Pune

text: Homo sapiens

text: Shouchella clausii

characteristic: organism

text: whole organism

characteristic: strain

text: Microbe sample from Shouchella clausii


text: Bielefeld University

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7520-2, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7522, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7523-2, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7529, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7535-K, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7537-T, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7538, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7539, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7540-1, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7540-2, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7541, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7543, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7547-G, isolated from an uncut heroin sample


text: Bielefeld University

text: live

text: Microbe, viral or environmental

text: uncut heroin sample

text: Shouchella clausii

text: pure culture

text: Bacillus clausii strain 7894-1, isolated from an uncut heroin sample


name: Bacillus coagulans strain LBSC (DSM 17654)

text: Advanced Enzyme Technologies Limited

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: India: Nashik, Maharashtra

text: Environment

characteristic: isolate

text: soil

text: Heyndrickxia coagulans

text: Soil

text: LBSC (DSM 17654)

text: Microbe sample from Heyndrickxia coagulans


Bacillus camelliae

text: Shanghai University

text: live

text: Microbe, viral or environmental

text: China

text: Pu'er tea

characteristic: isolation source

text: Heyndrickxia camelliae

text: cell culture

text: Microbe sample from Heyndrickxia camelliae

text: type strain of Bacillus camelliae

characteristic: type material


text: State Key Laboratory of Agricultural Microbiology

characteristic: INSDC last update

text: live

text: MIGS.ba

characteristic: depth

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

characteristic: elev

text: corn field

characteristic: env biome

text: plain

characteristic: env feature

text: soil

text: China: Wuhan

text: xylose 10 g/L, yeast extract 10 g/L

text: 30.47 N 114.35 E

characteristic: lat lon

text: Heyndrickxia coagulans

text: High-titer lactic acid production from NaOH-pretreated corn stover by Bacillus coagulans LA204 using fed-batch simultaneous saccharification and fermentation under non-sterile condition

text: MIGS Cultured Bacterial/Archaeal sample from Heyndrickxia coagulans


Pseudomonas sp. CMR12a

characteristic: External Id

text: Universite de Moncton

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: SRA accession

text: Cameroon: South West province, Bokwai

characteristic: geo loc name

text: Xanthosoma sagittifolium

characteristic: host

text: red cocoyam rhizosphere

text: Pseudomonas sessilinigenes

text: cell culture

characteristic: sample type

text: Microbe sample from Pseudomonas sessilinigenes

characteristic: title

text: type strain of Pseudomonas sessilinigenes

characteristic: type-material


text: South China Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: collection date

text: Bacillus coagulans from lead mine

text: soil

characteristic: isolate

text: Heyndrickxia coagulans

characteristic: organism

text: soil

text: Microbe sample from Bacillus coagulans


Bacillus coagulans R11

characteristic: External Id

text: South China Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Yunnan

text: soil

characteristic: isolation source

text: Heyndrickxia coagulans

text: soil

characteristic: strain


Bacillus coagulans ZB29

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Jayraj A. Doshi

characteristic: collected by

characteristic: culture collection

text: Probiotic strain of commercial importance

characteristic: description

text: India:Mumbai

text: milk

text: Heyndrickxia coagulans

text: pure culture

text: ambient

characteristic: temp

text: Bacillus coagulans ZB29


text: Advanced Enzyme Technologies Limited

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: India: Maharashtra

characteristic: geo loc name

text: soil

text: Shouchella clausii

text: Whole Organism

characteristic: sample type

text: Microbe sample from Shouchella clausii

characteristic: title


text: BGI

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: collection date

text: China: Shenzhen

text: Homo sapiens

characteristic: host

text: feces

text: Heyndrickxia coagulans

text: whole organism


characteristic: External Id

text: Oak Ridge National Laboratory

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: rhizosphere

characteristic: isolation source

text: Heyndrickxia coagulans

characteristic: organism

text: single cell isolate

text: DSM 2314

characteristic: strain

text: Microbe sample from Bacillus coagulans


text: School of Biomedical Sciences, The Chinese University of Hong Kong

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

text: 6 weeks

characteristic: age

text: GV oocyte

characteristic: cell type

text: Mus musculus

text: GV oocyte


characteristic: INSDC center name

text: live

text: Generic

text: 12 months

text: GV oocyte

text: Mus musculus

text: GV oocyte


text: live

text: Generic

text: 6 weeks

text: MII oocyte

text: Mus musculus

text: MII oocyte

characteristic: title


Bacillus coagulans C106

text: A*STAR Institute of Chemical and Engineering Sciences

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: Christoph Ottenheim

characteristic: collected by

text: Singapore

characteristic: geo loc name

text: Ye Lidan

characteristic: identified by

text: soil

text: Heyndrickxia coagulans

text: isolate

characteristic: sample type

text: Microbial isolate Bacillus coagulans C106


Bacillus coagulans WCP10-4

characteristic: External Id

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: Xingding Zhou

characteristic: collection date

text: Singapore

text: Xingding Zhou

text: soil

text: Heyndrickxia coagulans

text: isolate

text: Microbial isolate Bacillus coagulans WCP10-4


text: National University of Singapore

text: live

text: Microbe, viral or environmental

text: Singapore

text: wetland

text: Shouchella clausii

characteristic: organism

text: cell cultrue

characteristic: strain

text: Microbe sample from Shouchella clausii


Bacillus coagulans SNZ 1969

text: Sanzyme Biologics Pvt Ltd

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: SRA accession

text: Dr. Nakayama (Japanese Physician)

characteristic: culture collection

text: Japan

text: Malt Green

characteristic: isolation source

text: Heyndrickxia coagulans

text: Whole organism

text: SNZ 1969

text: Probiotic Bacillus coagulans SNZ 1969


Bacillus coagulans IDCC1201

text: Research Laboratories, Ildong Pharmaceutical

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: Korea:Hwaseong

text: Vegetable(malt)

text: Heyndrickxia coagulans

text: single cell

text: Microbe sample from Bacillus coagulans

characteristic: title


text: University of Naples Federico II

characteristic: INSDC first public

text: live

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: Canned food industry

text: industrial enverioment

text: Agricultural waste

text: Italy:Angri

characteristic: geo loc name

text: agricultural waste

text: 40.44 N 14.34 E

characteristic: lat lon

text: Heyndrickxia coagulans


DSM 19099

characteristic: External Id

text: Fujian Academy of Agricultural Sciences

characteristic: INSDC last update

text: live

text: MIGS.ba

characteristic: culture-collection

text: surface

characteristic: depth

text: Keywords: GSC:MIxS;MIGS:6.0

text: soil

text: soil

text: India

text: 30 degree at pH 8 on LB

text: soil

characteristic: isolation-source

text: 34.15 N 77.57 E

text: Shouchella lehensis

text: unpublished

text: aerobe

text: DSM 19099

text: MIGS Cultured Bacterial/Archaeal sample from Shouchella lehensis

text: type strain of Bacillus lehensis

characteristic: type material


text: NCBI

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission package

text: Synechococcus sp. WH 5701

characteristic: organism

text: WH 5701

characteristic: strain

text: Sample from Synechococcus sp. WH 5701


name: bAlcTor1 Razorbill tissue for G10K-VGP reference genome

characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission model

characteristic: SRA accession

text: Copenhagen Zoological Museum

characteristic: biomaterial provider

text: Jon Fjeldsa

characteristic: collected by

text: The raw data and assembly of this submission are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/about/data_use_policy. The Razorbill is a colonical seabird and it is the closest living relative of the extinct great auk (Pinguinis impennis). The sample was provided by Copenhagen Zoological Museum and this reference assembly of has been produced as part of the G10K-VGP Project.

text: Chick

characteristic: dev stage

text: Denmark: Graesholm Island

characteristic: isolate

text: 55.2833 N 9.8 E

text: Alca torda

text: male

characteristic: sex

text: Muscle

characteristic: tissue

text: Animal sample from Alca torda (Razorbill)


grapesoil

characteristic: External Id

text: Research Center for Eco-Environmental Sciences, Chinese Academy of Science

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Metagenome or environmental

text: China: Zhangjiakou

text: grapes

characteristic: host

text: soil

text: 40.35 N 115.16 E

text: soil metagenome

text: Metagenome or environmental sample from grape soil

characteristic: title


text: Bionivid

text: live

characteristic: INSDC status

text: Invertebrate

characteristic: NCBI submission package

text: India

text: plant

text: root

text: Meloidogyne sp. RB-2019

text: Invertebrate sample from Meloidogyne sp. RB-2019


Bacillus sp. AK13

text: Korea university

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: AK13 was isolated from the rhizosphere of Miscanthus sacchariflorus in Seongbukcheon, South Korea.

characteristic: description

text: South Korea: Seongbukcheon

characteristic: geo loc name

text: rhizosphere

characteristic: isolation source

text: Miscanthus sacchariflorus

text: Shouchella miscanthi

characteristic: organism

text: Single cell

characteristic: sample type

characteristic: strain

text: Microbe sample from Bacillus sp. AK13 (in: Bacteria)

text: type strain of Bacillus miscanthi

characteristic: type material


text: Pennington Biomedical Research Center, Louisiana State University System

characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: 8 months, 22 days

characteristic: age

text: not applicable

characteristic: breed

text: Heike Muenzberg

text: not applicable

characteristic: cultivar

text: Adult

text: not applicable

characteristic: disease

text: not applicable

characteristic: ecotype

text: All mice were fed with chow (LabDiet Rodent 5001) at room temperature.

text: Healthy

text: RNA extracted from stellate ganglion of animal 1

characteristic: isolate

text: Mus musculus

text: RNA

text: male

characteristic: sex

text: C57 BL/6J

text: Stellate ganglion (both sides)

characteristic: tissue

text: Model organism or animal sample from Mus musculus


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission package

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from stellate ganglion of animal 4

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

text: Stellate ganglion (both sides)

characteristic: title


text: live

text: Model organism or animal

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from stellate ganglion of animal 6

text: Mus musculus

characteristic: organism

text: RNA

text: male

text: C57 BL/6J

characteristic: strain

text: Stellate ganglion (both sides)


characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from stellate ganglion of animal 7

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

text: Stellate ganglion (both sides)


text: live

text: Model organism or animal

text: 8 months, 22 days

characteristic: age

text: not applicable

characteristic: breed

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from stellate ganglion of animal 11

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Stellate ganglion (both sides)


text: live

text: Model organism or animal

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

characteristic: cultivar

text: Adult

text: not applicable

characteristic: disease

text: not applicable

text: Healthy

text: RNA extracted from stellate ganglion of animal 13

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Stellate ganglion (both sides)


text: live

text: Model organism or animal

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

characteristic: ecotype

text: Healthy

text: RNA extracted from stellate ganglion of animal 14

characteristic: isolate

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Stellate ganglion (both sides)


text: live

text: Model organism or animal

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from stellate ganglion of animal 16

text: Mus musculus

text: RNA

text: female

characteristic: sex

text: C57 BL/6J

text: Stellate ganglion (both sides)

characteristic: tissue


characteristic: External Id

characteristic: INSDC first public

text: live

text: Model organism or animal

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T3 of animal 1

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

text: Thoracic ganglion T3 (both sides)


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T3 of animal 4

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

text: Thoracic ganglion T3 (both sides)


text: live

text: Model organism or animal

characteristic: NCBI submission package

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T3 of animal 6

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

text: Thoracic ganglion T3 (both sides)

characteristic: title


text: live

text: Model organism or animal

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T3 of animal 7

text: Mus musculus

characteristic: organism

text: RNA

text: male

text: C57 BL/6J

characteristic: strain

text: Thoracic ganglion T3 (both sides)


characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T3 of animal 11

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Thoracic ganglion T3 (both sides)


text: live

text: Model organism or animal

text: 8 months, 21 days

characteristic: age

text: not applicable

characteristic: breed

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T3 of animal 13

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Thoracic ganglion T3 (both sides)


text: live

text: Model organism or animal

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

characteristic: cultivar

text: Adult

text: not applicable

characteristic: disease

text: not applicable

text: Healthy

text: RNA extracted from T3 of animal 14

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Thoracic ganglion T3 (both sides)


text: live

text: Model organism or animal

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

characteristic: ecotype

text: Healthy

text: RNA extracted from T3 of animal 16

characteristic: isolate

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Thoracic ganglion T3 (both sides)


text: live

text: Model organism or animal

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T13/L1 of animal 1

text: Mus musculus

text: RNA

text: male

characteristic: sex

text: C57 BL/6J

text: Thoracolumbar ganglion T13/L1 (both sides)

characteristic: tissue


characteristic: External Id

characteristic: INSDC first public

text: live

text: Model organism or animal

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T13/L1 of animal 4

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T13/L1 of animal 6

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J


text: live

text: Model organism or animal

characteristic: NCBI submission package

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T13/L1 of animal 7

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

characteristic: title


text: live

text: Model organism or animal

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T13/L1 of animal 11

text: Mus musculus

characteristic: organism

text: RNA

text: female

text: C57 BL/6J

characteristic: strain


characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T13/L1 of animal 13

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J


text: live

text: Model organism or animal

text: 8 months, 21 days

characteristic: age

text: not applicable

characteristic: breed

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from T13/L1 of animal 14

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J


text: live

text: Model organism or animal

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

characteristic: cultivar

text: Adult

text: not applicable

characteristic: disease

text: not applicable

text: Healthy

text: RNA extracted from T13/L1 of animal 16

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J


text: live

text: Model organism or animal

text: 8 months, 21 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

characteristic: ecotype

text: Healthy

text: RNA extracted from L2 of animal 1

characteristic: isolate

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

text: Lumbar ganglion L2 (both sides)


text: live

text: Model organism or animal

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from L2 of animal 4

text: Mus musculus

text: RNA

text: male

characteristic: sex

text: C57 BL/6J

text: Lumbar ganglion L2 (both sides)

characteristic: tissue


characteristic: External Id

characteristic: INSDC first public

text: live

text: Model organism or animal

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from L2 of animal 6

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

text: Lumbar ganglion L2 (both sides)


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from L2 of animal 7

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

text: Lumbar ganglion L2 (both sides)


text: live

text: Model organism or animal

characteristic: NCBI submission package

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from L2 of animal 11

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Lumbar ganglion L2 (both sides)

characteristic: title


text: live

text: Model organism or animal

text: 8 months, 22 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from L2 of animal 13

text: Mus musculus

characteristic: organism

text: RNA

text: female

text: C57 BL/6J

characteristic: strain

text: Lumbar ganglion L2 (both sides)


characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: 10 months, 30 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from L2 of animal 14

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Lumbar ganglion L2 (both sides)


text: live

text: Model organism or animal

text: 10 months, 30 days

characteristic: age

text: not applicable

characteristic: breed

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from L2 of animal 16

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Lumbar ganglion L2 (both sides)


text: live

text: Model organism or animal

text: 10 months, 30 days

text: not applicable

text: Heike Muenzberg

text: not applicable

characteristic: cultivar

text: Adult

text: not applicable

characteristic: disease

text: not applicable

text: Healthy

text: RNA extracted from ganglia fat of animal 1

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

text: Ganglion fat


text: live

text: Model organism or animal

text: 10 months, 30 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

characteristic: ecotype

text: Healthy

text: RNA extracted from ganglia fat of animal 4

characteristic: isolate

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

text: Ganglion fat


text: live

text: Model organism or animal

text: 10 months, 30 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from ganglia fat of animal 6

text: Mus musculus

text: RNA

text: male

characteristic: sex

text: C57 BL/6J

text: Ganglion fat

characteristic: tissue


characteristic: External Id

characteristic: INSDC first public

text: live

text: Model organism or animal

text: 10 months, 30 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from ganglia fat of animal 7

text: Mus musculus

text: RNA

text: male

text: C57 BL/6J

text: Ganglion fat


characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

text: 10 months, 30 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from ganglia fat of animal 11

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Ganglion fat


text: Pennington Biomedical Research Center, Louisiana State University System

text: live

text: Model organism or animal

characteristic: NCBI submission package

text: 10 months, 30 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from ganglia fat of animal 13

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Ganglion fat

characteristic: title


text: live

text: Model organism or animal

text: 10 months, 30 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: All mice were fed with chow (LabDiet Rodent 5001) at room temperature.

text: Healthy

text: RNA extracted from ganglia fat of animal 14

text: Mus musculus

characteristic: organism

text: RNA

text: female

text: C57 BL/6J

characteristic: strain

text: Ganglion fat


characteristic: INSDC center name

text: live

text: Model organism or animal

characteristic: NCBI submission model

text: 10 months, 30 days

text: not applicable

text: Heike Muenzberg

text: not applicable

text: Adult

text: not applicable

text: not applicable

text: Healthy

text: RNA extracted from ganglia fat of animal 16

text: Mus musculus

text: RNA

text: female

text: C57 BL/6J

text: Ganglion fat

text: Model organism or animal sample from Mus musculus


text: Binzhou Medical University

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

characteristic: collection date

text: China: Yantai

characteristic: geo loc name

text: Heyndrickxia coagulans

text: cell culture

characteristic: sample type

text: Microbe sample from Heyndrickxia coagulans


name: Grey crowned-crane for G10K-VGP trio reference genome

text: live

text: Model organism or animal

text: 26 years

characteristic: age

text: University of Copenhagen/Natural Histor, Museum of Denmark

characteristic: biomaterial provider

characteristic: birth date

text: Mads Bertelsen, Tom Gilbert

characteristic: collected by

text: The Grey Crowned Crane (Balearica regulorum gibbericeps) is found in the dry African savannah south of the Sahara, as well as in the wetter areas and grassy flatlands near lakes and rivers in Uganda and Kenya. The Crowned crane performs an interesting display when breeding that involves dancing, bowing, and jumping, as well as a booming call that involves inflation of a red gular sac on its throat (description from the Avian Phylogenomics Project http://gigadb.org/dataset/101017). This sample was collected by Mads Bertelsen from a female that lived at the Copenhagen Zoo in Denmark and was procured by Tom Gilbert to generate a chromosome level reference assembly as part of the G10K-VGP and B10K Projects.

characteristic: description

text: adult

characteristic: dev stage

text: Denmark: Copenhagen Zoo

characteristic: isolate

text: 55.67278 N 12.52139 E

characteristic: lat lon

text: Balearica regulorum gibbericeps

text: female

characteristic: sex

text: frozen

text: gibbericeps

characteristic: sub species

text: Leg band 1332

characteristic: subject ID

text: blood

text: Animal sample from Balearica regulorum gibbericeps


name: Lanced-tailed manakin sample for G10K-VGP reference genome

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Florida State University

text: Emily DuVal

text: The lance-tailed manakin (Chiroxiphia lanceolata) is a lekking suboscine Passerine bird studied for understanding sexual selection and the evolution of cooperation. Males of this species form long-term cooperative alliances and display together to attract females, but only the dominant alpha member of each pair usually mates. Subordinate beta males participate closely in displays, but benefit through increased chances of becoming an alpha in future years. Males compete for alpha positions, and after male status is established, females make mate choices by flying among dispersed alpha display territories. Displays are acrobatic and complex. Their song repertoire is diverse for a suboscine and includes male-male duets by alpha-beta partners. Adults can live up to 18 years. Females raise chicks outside of mates display areas and without male assistance, and tracking via video and telemetry has been used to recreate the process of mate choice and test hypotheses about how and why females choose the mates they do. Archived samples from one population monitored for 20+ years are available for questions requiring known relationships among individuals, and longitudinal data on individual genetic reproductive success. This sample of an adult female from Isla Boca Brava, Republic of Panama, was collected by Emily DuVal following an incidental netting death. The specimen was preserved for detailed genome sequencing as part of the G10K-VGP Project and in affiliation with the NSF RCN#1457541. The associated museum specimen and additional tissue are archived at the Museum of Vertebrate Zoology, UC Berkeley.

text: adult

text: Panama: Isla Boca Btava

text: 8.2166658 N 82.2666656 W

text: Chiroxiphia lanceolata

characteristic: organism

text: female

characteristic: specimen voucher

text: frozen

text: isolated red blood cells

characteristic: tissue

text: Animal sample from Chiroxiphia lanceolata

characteristic: title

text: ethanol

characteristic: treatment

characteristic: voucher URL


name: Downy Woodpecker sample for G10K-VGP reference genome

text: Matthew Fuxjager

characteristic: Genome coordinator

characteristic: INSDC secondary accession

text: live

text: Model organism or animal

characteristic: SRA accession

text: Wake Forest University

characteristic: biomaterial provider

text: Matt Fuxjager, Eric Schuppe

characteristic: collected by

characteristic: collection date

text: adult

characteristic: dev stage

text: USA: North Carolina

characteristic: geo loc name

characteristic: isolate

text: 36.13054 N 80.2563 W

characteristic: lat lon

text: Dryobates pubescens

text: female

text: frozen

text: blood

text: Animal sample from Dryobates pubescens

text: ethanol


name: Lumpfish sample for G10K-VGP reference genome

characteristic: External Id

text: Tony Einfeldt

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Dalhousie University

text: Tony Einfeldt

text: adult

text: Canada: Atlantic Ocean

text: 44.63694 N 63.59167 W

text: Cyclopterus lumpus

text: male

characteristic: sex

text: frozen

characteristic: subject ID

text: muscle/heart

text: Animal sample from Cyclopterus lumpus

text: flash frozen


Bacillus coagulans LSBC-1

text: Lishui University

text: live

text: Microbe, viral or environmental

text: China: Zhejiang, Lishui

text: soil

characteristic: isolation source

text: Heyndrickxia coagulans

characteristic: organism

text: mixed culture

characteristic: sample type

characteristic: strain

characteristic: title


Bacillus coagulans CICC 20138

text: China University of Petroleum (East China)

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China: Shanghai

characteristic: geo loc name

text: fermenter

text: Heyndrickxia coagulans

text: cell culture

text: CICC 20138


Bacillus ginsengihumi

text: China Center of Industrial Culture Collection

text: live

text: Microbe, viral or environmental

text: South Korea

text: Ginseng Field

text: Heyndrickxia ginsengihumi

text: cell culture

text: Gsoil 114

text: Microbe sample from Heyndrickxia ginsengihumi

text: type strain of Bacillus ginsengihumi

characteristic: type material


Bacillus shackletonii

characteristic: External Id

text: live

text: Microbe, viral or environmental

text: China

text: volcanic soil

text: Heyndrickxia shackletonii

text: cell culture

text: LMG 18435

text: Microbe sample from Heyndrickxia shackletonii

text: type strain of Bacillus shackletonii


text: University of Florida, Microbiology and Cell Science

characteristic: INSDC center name

text: live

text: Generic

characteristic: common name

text: Heyndrickxia coagulans

text: Sample from Heyndrickxia coagulans


Bacillus clausii SNZ 1971

text: Sanzyme Biologics Pvt Ltd

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: MTCC: 5980

characteristic: culture collection

text: Whole Genome Sequence of Probiotic Bacteria Bacillus clausii SNZ 1971

characteristic: description

text: India

text: soil

text: Shouchella clausii

text: Whole organism

text: SNZ 1971

text: Probiotic Bacillus clausii SNZ 1971


text: Northeast Agricultural University

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: China:Harbin

text: infant's fecal samples66

characteristic: isolation source

text: Heyndrickxia coagulans

text: fecal sample


text: Northeast Agricultural University

text: live

text: Microbe, viral or environmental

text: China:Harbin

text: infant's fecal samples67

text: Heyndrickxia coagulans

characteristic: organism

text: fecal sample

characteristic: sample type

characteristic: strain

characteristic: title


characteristic: External Id

text: Northeast Agricultural University

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: China:Harbin

characteristic: geo loc name

text: infant's fecal samples80

text: Heyndrickxia coagulans

text: fecal sample


text: Northeast Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

text: China:Harbin

text: infant's fecal samples81

text: Heyndrickxia coagulans

text: fecal sample


text: University of Guelph

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

text: Homo sapiens

characteristic: host

text: Heyndrickxia coagulans

text: Single culture


Bacillus coagulans CMB061

text: South Dakota State University

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: SRA accession

text: not collected

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: USA: South Dakota

text: Bos taurus

text: Anaerobically at 37 degree C in mBHI medium

text: not collected

characteristic: lat lon

text: Heyndrickxia coagulans

text: MIGS Cultured Bacterial/Archaeal sample from Heyndrickxia coagulans


Bacillus coagulans CMB086

text: South Dakota State University

text: live

characteristic: INSDC status

text: MIGS.ba

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission package

text: not collected

text: Keywords: GSC:MIxS;MIGS:6.0

text: USA: South Dakota

text: Bos taurus

text: not collected

text: Heyndrickxia coagulans


Bacillus coagulans CMB395

text: South Dakota State University

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.host-associated

text: not collected

text: Keywords: GSC:MIxS;MIGS:6.0

text: USA: South Dakota

text: Bos taurus

text: not collected

text: Heyndrickxia coagulans

characteristic: organism


Bacillus coagulans CMB397

text: South Dakota State University

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.host-associated

text: not collected

text: Keywords: GSC:MIxS;MIGS:6.0

text: USA: South Dakota

text: Bos taurus

text: not collected

text: Heyndrickxia coagulans

characteristic: strain


Bacillus coagulans CMB410

text: South Dakota State University

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.host-associated

text: not collected

text: Keywords: GSC:MIxS;MIGS:6.0

text: USA: South Dakota

text: Bos taurus

text: not collected

text: Heyndrickxia coagulans

characteristic: title


Bacillus clausii Deerland

characteristic: External Id

text: Deerland

text: live

text: Microbe, viral or environmental

text: USA

text: laboratory

characteristic: isolation source

text: Shouchella clausii

text: whole organism

characteristic: sample type

text: Microbe sample from Shouchella clausii


Bacillus coagulans CGD018

text: Deerland

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: USA

characteristic: geo loc name

text: Heyndrickxia coagulans

text: whole organism


Bacillus coagulans 2 Deerland

text: Deerland

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: USA

text: laboratory

text: Heyndrickxia coagulans

text: whole organism


text: MACS Agharkar Research Institute, Pune (MS) India

text: live

text: Microbe, viral or environmental

text: India: Pune, Maharashtra

text: Homo sapiens

characteristic: host

text: Shouchella clausii

text: whole organism

text: Microbe sample from Shouchella clausii


GMN

text: live

text: Microbe, viral or environmental

text: India: Pune, Maharashtra

text: Homo sapiens

text: Shouchella clausii

text: whole organism

text: GMN

text: Microbe sample from Shouchella clausii


text: USFDA

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: USA:MD

text: Homo sapiens

text: Dietary Supplement

text: Heyndrickxia coagulans

text: Single cell

text: Microbe sample from Bacillus coagulans


text: USFDA

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

text: USA:MD

text: Homo sapiens

text: Dietary Supplement

text: Heyndrickxia coagulans

text: Single cell

text: Microbe sample from Bacillus coagulans


Bacillus coagulans ASRS217

text: Dongduk Women's University

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: South Korea: Suwon

text: Rice straw

text: Heyndrickxia coagulans

text: Cell


text: Icahn School of Medicine at Mount Sinai

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: USA

text: Homo sapiens

text: stool

text: Bacillus_coagulans_BSD2780061689_150309_A3

characteristic: note

text: Heyndrickxia coagulans

text: whole organism


text: Chinese Academy of Agricultural Sciences(CAAS)

text: live

text: Plant

text: not collected

characteristic: age

text: not collected

characteristic: cultivar

text: not collected

text: tetrad

characteristic: ecotype

text: China:Zhengzhou

text: not collected

characteristic: isolate

text: Citrullus lanatus

characteristic: organism

text: replicate = biological replicate 1'

characteristic: replicate

text: flower

characteristic: tissue

text: Plant sample from Citrullus lanatus


characteristic: External Id

characteristic: INSDC center name

text: live

text: Plant

text: not collected

text: not collected

text: not collected

text: tetrad

text: China:Zhengzhou

text: not collected

text: Citrullus lanatus

text: replicate = biological replicate 2'

text: flower

text: Plant sample from Citrullus lanatus

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Plant

text: not collected

text: not collected

text: not collected

text: tetrad

text: China:Zhengzhou

text: not collected

text: Citrullus lanatus

text: replicate = biological replicate 3'

text: flower

text: Plant sample from Citrullus lanatus


characteristic: INSDC secondary accession

text: live

text: Plant

characteristic: SRA accession

text: not collected

text: not collected

text: not collected

text: mononuclear

text: China:Zhengzhou

text: not collected

text: Citrullus lanatus

text: replicate = biological replicate 1'

text: flower

text: Plant sample from Citrullus lanatus


text: live

characteristic: INSDC status

text: Plant

characteristic: NCBI submission model

text: not collected

text: not collected

text: not collected

text: mononuclear

text: China:Zhengzhou

text: not collected

text: Citrullus lanatus

text: replicate = biological replicate 2'

text: flower

text: Plant sample from Citrullus lanatus


text: live

text: Plant

characteristic: NCBI submission package

text: not collected

text: not collected

text: not collected

text: mononuclear

text: China:Zhengzhou

text: not collected

text: Citrullus lanatus

text: replicate = biological replicate 3'

text: flower

text: Plant sample from Citrullus lanatus


text: live

text: Plant

text: not collected

characteristic: age

text: not collected

text: not collected

text: dikaryophase

text: China:Zhengzhou

text: not collected

text: Citrullus lanatus

text: replicate = biological replicate 1'

text: flower

text: Plant sample from Citrullus lanatus


text: live

text: Plant

text: not collected

text: not collected

characteristic: cultivar

text: not collected

text: dikaryophase

text: China:Zhengzhou

text: not collected

text: Citrullus lanatus

text: replicate = biological replicate 2'

text: flower

text: Plant sample from Citrullus lanatus


text: live

text: Plant

text: not collected

text: not collected

text: not collected

text: dikaryophase

characteristic: ecotype

text: China:Zhengzhou

text: not collected

text: Citrullus lanatus

text: replicate = biological replicate 3'

text: flower

text: Plant sample from Citrullus lanatus


text: live

text: Plant

text: not collected

text: not collected

text: not collected

text: mature

text: China:Zhengzhou

text: not collected

characteristic: isolate

text: Citrullus lanatus

text: replicate = biological replicate 1'

text: flower

text: Plant sample from Citrullus lanatus


text: live

text: Plant

text: not collected

text: not collected

text: not collected

text: mature

text: China:Zhengzhou

text: not collected

text: Citrullus lanatus

characteristic: organism

text: replicate = biological replicate 2'

text: flower

text: Plant sample from Citrullus lanatus


text: live

text: Plant

text: not collected

text: not collected

text: not collected

text: mature

text: China:Zhengzhou

text: not collected

text: Citrullus lanatus

text: replicate = biological replicate 3'

characteristic: replicate

text: flower

text: Plant sample from Citrullus lanatus


text: CAAS

text: live

text: Generic

text: mature

characteristic: developmental stage

text: Citrullus lanatus

text: Watermelon

text: flower

characteristic: tissue


characteristic: External Id

text: CAAS

characteristic: INSDC center name

text: live

text: Generic

text: dikaryophase

text: Citrullus lanatus

text: Watermelon

text: flower


text: CAAS

characteristic: INSDC first public

text: live

text: Generic

text: mononuclear

text: Citrullus lanatus

text: Watermelon

text: flower

characteristic: title


text: CAAS

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: tetrad

text: Citrullus lanatus

text: Watermelon

text: flower


text: sun yat-sen University

text: live

characteristic: INSDC status

text: Generic

characteristic: SRA accession

text: Healthy

characteristic: diagnosis

text: Homo sapiens

text: liver perfusate

text: Liver

characteristic: tissue type


text: sun yat-sen University

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: HCC

text: Homo sapiens

text: liver perfusate

text: Tumor


text: Affiliated Sixth People’s Hospital, Bengbu Medical College

text: live

text: Generic

text: Penicillium oxalicum

text: Mycelium

characteristic: strain


text: live

text: Generic

text: Penicillium oxalicum

characteristic: organism

text: Mycelium

text: MuPOXClrB


text: Indiana University

text: live

text: Generic

text: Fkbp5 KO

characteristic: genotype

text: Mus musculus

text: Liver

text: Liver

text: Fkbp5 KO mice liver with Etoh diet plus binge-4

text: EtOH diet plus binge

characteristic: treatment


text: Indiana University

text: live

text: Generic

text: Fkbp5 KO

text: Mus musculus

text: Liver

text: Liver

characteristic: tissue

text: Fkbp5 KO mice liver with Etoh diet plus binge-3

text: EtOH diet plus binge


characteristic: External Id

text: Indiana University

text: live

text: Generic

text: Fkbp5 KO

text: Mus musculus

text: Liver

text: Liver

text: Fkbp5 KO mice liver with Etoh diet plus binge-2

text: EtOH diet plus binge


text: Indiana University

characteristic: INSDC center name

text: live

text: Generic

text: Fkbp5 KO

text: Mus musculus

text: Liver

text: Liver

text: Fkbp5 KO mice liver with Etoh diet plus binge-1

text: EtOH diet plus binge


text: Indiana University

characteristic: INSDC first public

text: live

text: Generic

text: Fkbp5 KO

text: Mus musculus

text: Liver

text: Liver

text: Fkbp5 KO mice liver with control diet-3

text: Control diet


text: Indiana University

text: live

text: Generic

text: Fkbp5 KO

text: Mus musculus

text: Liver

text: Liver

text: Fkbp5 KO mice liver with control diet-2

characteristic: title

text: Control diet


text: Indiana University

characteristic: INSDC last update

text: live

text: Generic

text: Fkbp5 KO

text: Mus musculus

text: Liver

text: Liver

text: Fkbp5 KO mice liver with control diet-1

text: Control diet


text: Indiana University

characteristic: INSDC secondary accession

text: live

text: Generic

text: Fkbp5 KO

text: Mus musculus

text: Liver

text: Liver

text: WT mice liver with Etoh diet plus binge-4

text: EtOH diet plus binge


text: Indiana University

text: live

characteristic: INSDC status

text: Generic

text: Wild type

text: Mus musculus

text: Liver

text: Liver

text: WT mice liver with Etoh diet plus binge-3

text: EtOH diet plus binge


text: Indiana University

text: live

text: Generic

characteristic: SRA accession

text: Wild type

text: Mus musculus

text: Liver

text: Liver

text: WT mice liver with Etoh diet plus binge-2

text: EtOH diet plus binge


text: Indiana University

text: live

text: Generic

text: Wild type

text: Mus musculus

text: Liver

text: Liver

text: WT mice liver with Etoh diet plus binge-1

text: EtOH diet plus binge


text: Indiana University

text: live

text: Generic

text: Wild type

text: Mus musculus

text: Liver

text: Liver

text: WT mice liver with control diet-4

text: Control diet


text: Indiana University

text: live

text: Generic

text: Wild type

text: Mus musculus

text: Liver

text: Liver

text: WT mice liver with control diet-3

text: Control diet


text: Indiana University

text: live

text: Generic

text: Wild type

text: Mus musculus

text: Liver

text: Liver

text: WT mice liver with control diet-2

text: Control diet


text: Indiana University

text: live

text: Generic

text: Wild type

text: Mus musculus

text: Liver

text: Liver

text: WT mice liver with control diet-1

text: Control diet


text: FCFRP

text: live

text: MIMAG.plant-associated

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

text: food fermentation metagenome

text: cocoa fermentation metagenome

text: fermentation

text: Brazil

characteristic: geo loc name

text: uncultured

characteristic: isolate

text: cocoa fermentation

characteristic: isolation source

text: Heyndrickxia ginsengihumi

characteristic: replicates

text: MIMAG Metagenome-assembled Genome sample from Heyndrickxia ginsengihumi


Bacillus clausii 088AE (1)

text: Advanced Enzyme Technologies Limited

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Surface Soil sample

characteristic: altitude

text: Anil Gupta, Advanced Enzyme Technologies Limited

characteristic: biomaterial provider

text: Advanced Enzyme Technologies Limited

characteristic: collected by

characteristic: collection date

text: Soil

text: India:Maharastra

characteristic: host

text: Dina Saroj, 16S accession number: NCBI/GenBank accession number MH532550

characteristic: identified by

text: Bacillus clausii 088AE

text: soil sample

text: Shouchella clausii

characteristic: organism

text: Whole organism

characteristic: sample type

characteristic: strain

text: Microbe sample from Shouchella clausii


characteristic: External Id

text: FDA-ARGOS Database

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: SRA accession

text: Tetracore

characteristic: culture collection

text: ATCC 7050

text: USA:MD

text: Phenotypic and Molecular Methods

characteristic: identification method

text: Heyndrickxia coagulans

text: Pathogen: clinical or host-associated sample from Heyndrickxia coagulans

characteristic: title


text: FCFRP

text: live

text: MIMAG.plant-associated

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

text: Cocoa fermentation

text: Cocoa fermentation

text: Cocoa fermentation

characteristic: isolate

text: Cocoa fermentation

characteristic: isolation source

text: Heyndrickxia ginsengihumi

characteristic: replicates


text: live

text: Model organism or animal

text: Paul Scofield

characteristic: collected-by

characteristic: collection-date

text: New Zealand

characteristic: country

text: The Rifleman (Acanthisitta chloris) is an endemic bird to New Zealand and is also known as New Zealand wrens, or Titipounamu in Maori. It belongs to the Acanthisittidae family, and is one of two surviving species. The Rifleman is named after a colonial New Zealand regiment because its plumage is similar to the military uniform of a rifleman (description from the Avian Phylogenomics Project http://gigadb.org/dataset/101015). This sample was collected by Kristal Cain from a female in New Zealand, and procured by Erich Jarvis to contribute towards generating HiC data for a chromosome level reference assembly as part of the G10K-VGP and B10K Projects.

text: Adult

characteristic: dev stage

text: 43.464458 S 171.791763 E

characteristic: lat-lon

text: This sample group is the combination of the 2 individual Biosamples: SAMN12621378 and SAMN12622410.

characteristic: note

text: Acanthisitta chloris

characteristic: organism

text: female

characteristic: sex

text: frozen

text: blood

characteristic: tissue

text: Combination Biosample of Acanthisitta chloris(SAMN12621378 and SAMN12622410)

text: ethanol

characteristic: treatment


Bacillus coagulans-BC01

characteristic: External Id

text: Thankcome Biological Science and Technology (Su Zhou) Co.,LTD.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: collection date

text: China:Jiangsu

characteristic: geo loc name

text: thick broad-bean sauce

text: Heyndrickxia coagulans

text: Bacteria

characteristic: sample type

characteristic: strain

text: Complete Genome Sequence of Bacillus coagulans BC01

characteristic: title


name: 16S rDNA of BC320 isolated from Cyprinus carpio intestinal

text: Hebei Agriculture University

text: live

text: MIMARKS.specimen

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

text: temperate

text: culture pond

text: fresh water

text: China: Tangshan

text: Cyprinus carpio

characteristic: host

text: 40 (Celsius), facultative anaerobe

text: not available

characteristic: lat lon

text: Heyndrickxia coagulans

text: MIMARKS Specimen sample from Bacillus coagulans


text: DOE Joint Genome Institute

characteristic: INSDC secondary accession

text: live

text: MIGS.ba

characteristic: SRA accession

characteristic: culture collection

text: Genome sequencing as part of The One Thousand Microbial Genomes Phase 4 (KMG IV) project

text: China: Hunan Province, Xiaoxi National Natural Reserve

text: Shouchella xiaoxiensis

characteristic: organism

text: DSM 21943

text: Alkalihalobacillus xiaoxiensis DSM 21943

text: type strain of Bacillus xiaoxiensis

characteristic: type material


Weizmannia coagulans BA375

characteristic: External Id

text: WooSong University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: South Korea: Taean

text: Jae-Chan Lee

characteristic: identified by

text: soil from solar saltern

characteristic: isolation source

text: Ki-Hong Yoon

characteristic: lab owner

text: Heyndrickxia coagulans

text: cell culture

characteristic: temp

text: Microbe sample from Heyndrickxia coagulans


text: ARG 92 179

characteristic: Field #

text: live

characteristic: INSDC status

text: Model organism or animal

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Smithsonian

characteristic: biomaterial provider

text: Argentina

characteristic: birth location

text: J.P. Angie, Luis Chiappe, Storrs L. Olsonn

characteristic: collected by

characteristic: collection date

text: The maguari stork (Ciconia maguari) is a large species of stork that inhabits seasonal wetlands of South America. It is one of only three stork species to inhabit the Americas. There are among the larger stork species (from Wikipedia entry). This sample from a female was procured by J. P.Angle, Luis Chiappe , and Storrs L Olson from Estancia El Tala, Argentina. It was further procured by Gary Graves of the Smithsonian Museum in Washington D.C., to generate a high-quality reference for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, lead by Olivier Fedrigo and Erich D. Jarvis, with support from Tom Gilbert and Jarvis.

text: adult

characteristic: dev stage

text: Argentina: Estancia El Tala, near Puerto Constanza

characteristic: geo loc name

characteristic: isolate

text: 33.2599 S 64.8519 W

text: Ciconia maguari

text: Tissue #: B02773

characteristic: sample type

text: female

characteristic: sex

characteristic: specimen voucher

text: Frozen

text: Animal sample from Ciconia maguari (Maguari stork) for VGP reference genome bCicMag1

characteristic: title

text: 3950 g

characteristic: weight


Weizmannia sp. Marseille-P8953

characteristic: External Id

text: IHU Mediterranee Infection

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: MIGS/MIMS/MIMARKS.human-associated

text: MIGS.ba

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: Human feces

text: Homo sapiens

characteristic: host

text: feces

characteristic: isolation-source

text: Heyndrickxia faecalis

characteristic: organism

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Heyndrickxia faecalis

text: type strain of Weizmannia faecalis

characteristic: type-material


name: Weizmannia coagulans IPE22 ferments in glucose

text: Hebei University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

characteristic: collection date

text: China:Hebei

characteristic: geo loc name

text: soil

characteristic: isolation source

text: Heyndrickxia coagulans

text: cell culture

text: Weizmannia coagulans IPE22 ferments in 3 different sugar(glucose)


name: Weizmannia coagulans IPE22 ferments using both glucose and xylose

characteristic: External Id

text: Hebei University

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

text: China:Hebei

text: soil

text: Heyndrickxia coagulans

text: cell culture

characteristic: sample type

characteristic: title


name: WeizmanniacoagulansIPE22ferments using only xylose

text: Hebei University

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: China:Hebei

text: soil

text: Heyndrickxia coagulans

text: cell culture

text: WeizmanniacoagulansIPE22fermentsindifferentsugar(xylose)


Bacillus clausii - UBBC-08/S

text: Unique Biotech Limited

text: live

text: Microbe, viral or environmental

text: India: Unique Biotech Limited, Hyderabad

text: soil sample

text: Shouchella clausii

characteristic: organism

text: whole organism

text: Bacillus clausii - UBBC-08/S isolate from soil sample


Bacillus clausii UBBC-08/C

text: Unique Biotech Limited

text: live

text: Microbe, viral or environmental

text: soil sample

text: Shouchella clausii

text: whole organism

characteristic: strain

text: Bacillus clausii UBBC-08/C isolate from soil sample


Bacillus clausii UBBC-08/R

text: Unique Biotech Limited

text: live

text: Microbe, viral or environmental

text: soil sample

text: Shouchella clausii

text: whole organism

text: Bacillus clausii UBBC-08/R isolate from soil sample


Bacillus clausii UBBC-08/T

text: Unique Biotech Limited

text: live

text: Microbe, viral or environmental

text: soil sample

text: Shouchella clausii

text: whole organism

text: Bacillus clausii UBBC-08/T isolate from soil sample


179-F 5B1 HS

text: Jet Propulsion Laboratory, California Institute of Technology

text: live

text: Microbe, viral or environmental

text: Jet Propulsion Laboratory

characteristic: biomaterial provider

text: Location 5

characteristic: description

text: chaparral biome|indoor biome|cleanroom biome

text: USA: California, Pasadena, JPL, Building 179

text: cleanroom floor

text: 34.200083 N 118.173361 W

characteristic: lat lon

text: Shouchella clausii

text: cell culture

text: 179-F 5B1 HS

characteristic: temp

text: Microbe sample from Shouchella clausii


text: Northern Arizona University

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Pathogen.cl

characteristic: NCBI submission model

characteristic: NCBI submission package

text: Northern Arizona Healthcare

text: USA: Arizona

text: Homo sapiens

characteristic: host

text: diarrhea

text: feces

text: 35.11 N 111.39 W

text: Clostridioides difficile

text: Pathogen: clinical or host-associated sample from Clostridioides difficile


characteristic: External Id

text: Northern Arizona University

text: live

text: Pathogen.cl

characteristic: SRA accession

text: Northern Arizona Healthcare

text: unknown

text: USA: Arizona

text: Homo sapiens

text: diarrhea

text: feces

text: 35.11 N 111.39 W

text: Clostridioides difficile


text: Northern Arizona University

characteristic: INSDC center name

text: live

text: Pathogen.cl

text: Northern Arizona Healthcare

text: USA: Arizona

text: Canis lupus familiaris

text: missing

text: feces

text: 35.11 N 111.39 W

text: Clostridioides difficile


text: Northern Arizona University

text: live

text: Pathogen.env

text: Northern Arizona University

text: USA: Arizona

text: soil

text: 35.11 N 111.39 W

text: Clostridioides difficile

text: Pathogen: environmental/food/other sample from Clostridioides difficile

characteristic: title


Bacillus coagulans CACC 834

text: Center for Industrialization of Agricultural and Livestock Microorganisms

characteristic: INSDC first public

text: live

text: Microbe, viral or environmental

characteristic: collection date

text: South Korea:Jeongeup-si

characteristic: geo loc name

text: Canine

text: feces

characteristic: isolation source

text: Heyndrickxia coagulans

text: single cell

characteristic: sample type

text: CACC 834

text: Bacillus coagulans CACC 834 isolated from canine feces


text: Longyan University

characteristic: INSDC last update

text: live

text: Microbe, viral or environmental

text: China

text: Sus scrofa

text: intestinal tract

text: Heyndrickxia coagulans

characteristic: organism

text: cell culture

characteristic: strain

text: Microbe sample from Heyndrickxia coagulans


text: Henan Agricultural University

characteristic: INSDC secondary accession

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.miscellaneous

characteristic: depth

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

characteristic: elev

text: plain

text: plain

text: compost

text: China

text: ['compost', '']

text: 33.37 N 116.45 E

text: compost metagenome

text: MIMS Environmental/Metagenome sample from compost metagenome


text: Henan University of Animal Husbandry and Economy

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: China:Henan

text: Jiuqu

text: Bacillus velezensis

text: Microbe sample from Bacillus velezensis


characteristic: External Id

text: Laboratory for Epigenetics Drug Discovery, Center for Biosystems Dynamics Research, RIKEN

characteristic: INSDC center name

text: live

text: Generic

characteristic: SRA accession

text: Microglia cell line C13NJ

characteristic: cell line

text: H3K27ac (Abcam, ab4729)

characteristic: chip antibody

text: Homo sapiens

text: Microglia cell line

text: DMSO-treated

characteristic: treatment


characteristic: INSDC first public

text: live

text: Generic

text: Microglia cell line C13NJ

text: H4K5acK8ac (Mouse Monoclonal, Handoko, L. et. al. Epigenetics 13(4):410, 2018)

text: Homo sapiens

text: Microglia cell line

characteristic: title

text: Untreated


characteristic: INSDC last update

text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

characteristic: organism

text: Microglia cell line

text: JQ1-treated for 24h


characteristic: INSDC secondary accession

text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: DMSO-treated


text: live

text: Generic

text: Microglia cell line C13NJ

text: BRD4 (Bethyl Laboratories, A301-985A100)

text: Homo sapiens

text: Microglia cell line

text: DMSO-treated


text: live

text: Generic

text: Patient derived glioblastoma stem cell line GSC316

text: Homo sapiens

text: CAGE-seq.GSC_316_no treatment_R3

text: Untreated


text: live

text: Generic

text: Homo sapiens

text: Patient derived glioblastoma stem cell line

text: CAGE-seq.GSC_316_no treatment_R2

text: Untreated


text: live

text: Generic

text: Homo sapiens

text: CAGE-seq.GSC_316_no treatment_R1

text: Untreated


text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: Untreated


text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: CAGE-seq.C13_No Treatment_R1

text: Untreated


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: CAGE-seq.U87_JQ1_5 uM_24h_R3

text: JQ1-treated for 24h


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: CAGE-seq.U87_JQ1_5 uM_24h_R2

text: JQ1-treated for 24h


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: CAGE-seq.U87_JQ1_5 uM_24h_R1

text: JQ1-treated for 24h


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: CAGE-seq.U87_DMSO_ R2

text: DMSO-treated


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: CAGE-seq.U87_DMSO_ R1

text: DMSO-treated


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: CAGE-seq.U87_No Treatment_R3

text: Untreated


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: CAGE-seq.U87_No Treatment_R2

text: Untreated


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: CAGE-seq.U87_No Treatment_R1

text: Untreated


text: live

text: Generic

text: Homo sapiens

text: JQ1-treated for 24h


text: live

text: Generic

text: Homo sapiens

text: DMSO-treated


text: live

text: Generic

text: Microglia cell line C13NJ

text: H3K27ac (Abcam, ab4729)

text: Homo sapiens

text: Microglia cell line

text: JQ1-treated for 24h


text: live

text: Generic

text: Glioblastoma cell line U87

text: H3K27ac (Abcam, ab4729)

text: Homo sapiens

text: Glioblastoma cell line

text: Untreated


text: live

text: Generic

text: Glioblastoma cell line U87

text: H3K27ac (Abcam, ab4729)

text: Homo sapiens

text: Glioblastoma cell line

text: JQ1-treated for 24h


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: DMSO-treated


text: live

text: Generic

text: Homo sapiens

text: Untreated


text: live

text: Generic

text: Homo sapiens

text: JQ1-treated for 24h


text: live

text: Generic

text: Homo sapiens

text: DMSO-treated


text: live

text: Generic

text: H3K4me3 (Millipore, 17-614)

text: Homo sapiens

text: Untreated


text: live

text: Generic

text: H3K4me1(Diagenode, C15410194)

text: Homo sapiens

text: Untreated


text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: CAGE-seq.C13_JQ1_5 uM_24h_R3

text: JQ1-treated for 24h


text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: CAGE-seq.C13_JQ1_5 uM_24h_R2

text: JQ1-treated for 24h


text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: CAGE-seq.C13_JQ1_5 uM_24h_R1

text: JQ1-treated for 24h


text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: CAGE-seq.C13_DMSO_24h_ R2

text: DMSO-treated


text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: CAGE-seq.C13_DMSO_24h_ R1

text: DMSO-treated


text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: CAGE-seq.C13_No Treatment_R3

text: Untreated


text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: CAGE-seq.C13_No Treatment_R2

text: Untreated


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: DMSO-treated


text: live

text: Generic

text: Glioblastoma cell line U87

text: H3K4me3 (Millipore, 17-614)

text: Homo sapiens

text: Glioblastoma cell line

text: Untreated


text: live

text: Generic

text: Glioblastoma cell line U87

text: H3K4me1(Diagenode, C15410194)

text: Homo sapiens

text: Glioblastoma cell line

text: Untreated


text: live

text: Generic

text: Glioblastoma cell line U87

text: H3K27ac (Abcam, ab4729)

text: Homo sapiens

text: Glioblastoma cell line

text: Untreated


text: live

text: Generic

text: Glioblastoma cell line U87

text: H3K27ac (Abcam, ab4729)

text: Homo sapiens

text: Glioblastoma cell line

text: JQ1-treated for 24h


text: live

text: Generic

text: Glioblastoma cell line U87

text: H3K27ac (Abcam, ab4729)

text: Homo sapiens

text: Glioblastoma cell line

text: DMSO-treated


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: Untreated


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: JQ1-treated for 24h


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: DMSO-treated


text: live

text: Generic

text: H3K27ac (Abcam, ab4729)

text: Homo sapiens

text: Untreated


text: live

text: Generic

text: H3K27ac (Abcam, ab4729)

text: Homo sapiens

text: JQ1-treated for 24h


text: live

text: Generic

text: H3K27ac (Abcam, ab4729)

text: Homo sapiens

text: DMSO-treated


text: live

text: Generic

text: Homo sapiens

text: Untreated


text: live

text: Generic

text: Homo sapiens

text: JQ1-treated for 24h


text: live

text: Generic

text: Homo sapiens

text: DMSO-treated


text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: DMSO-treated


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: Untreated


text: live

text: Generic

text: Glioblastoma cell line U87

text: Homo sapiens

text: Glioblastoma cell line

text: JQ1-treated for 24h


text: live

text: Generic

text: Microglia cell line C13NJ

text: Homo sapiens

text: Microglia cell line

text: JQ1-treated for 24h


text: live

text: Generic

text: Microglia cell line C13NJ

text: H3K4me3 (Millipore, 17-614)

text: Homo sapiens

text: Microglia cell line

text: Untreated


text: live

text: Generic

text: Microglia cell line C13NJ

text: H3K4me1(Diagenode, C15410194)

text: Homo sapiens

text: Microglia cell line

text: Untreated


text: live

text: Generic

text: Microglia cell line C13NJ

text: H3K27ac (Abcam, ab4729)

text: Homo sapiens

text: Microglia cell line

text: Untreated


text: live

text: Generic

text: Microglia cell line C13NJ

text: H3K27ac (Abcam, ab4729)

text: Homo sapiens

text: Microglia cell line

text: JQ1-treated for 24h


text: live

text: Generic

text: H3K4me1(Diagenode, C15410194)

text: Homo sapiens

text: Untreated


name: Gene sequencing Bacillus coagulans VHProbi C08

text: Qingdao Vland Biotech INC

text: live

text: MIGS.ba

text: MIGS/MIMS/MIMARKS.human-gut

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

text: China: Qingdao

characteristic: geo loc name

text: sour cabbage

characteristic: host

text: Aerobic

text: 35.35 N 119.30 E

characteristic: lat lon

text: Heyndrickxia coagulans

text: genome report

text: VHProbi C08

characteristic: strain

text: MIGS Cultured Bacterial/Archaeal sample from Heyndrickxia coagulans


Soil microbes treated with ether-PFAS

text: University at Albany - State University of New York

text: live

characteristic: INSDC status

text: Metagenome or environmental

characteristic: NCBI submission model

characteristic: NCBI submission package

text: USA: Albany, NY

text: natural / free-living

text: soil

text: 42.6526 N 73.7562 W

text: soil metagenome

text: Metagenome or environmental sample from soil metagenome


Non-inoculation

characteristic: External Id

text: Suranaree University of Technology

characteristic: INSDC center name

text: live

text: Plant

characteristic: SRA accession

text: 4 days old

characteristic: age

characteristic: cultivar

text: Juvenility

text: Thai

characteristic: ecotype

text: Thailand: Nakhonratchasima

text: Thailand

characteristic: isolate

text: Vigna radiata

text: nomal

characteristic: phenotype

text: root

characteristic: tissue

text: Plant sample from Vigna radiata


text: Suranaree University of Technology

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Plant

text: 4 days old

text: Juvenility

text: Thai

text: Thailand: Nakhonratchasima

text: Thailand

text: Vigna radiata

characteristic: organism

text: necrotic nodulation

text: root

text: Plant sample from Vigna radiata

characteristic: title


text: Suranaree University of Technology

text: live

characteristic: INSDC status

text: Plant

text: 4 days old

text: Juvenility

text: Thai

text: Thailand: Nakhonratchasima

text: Thailand

text: Vigna radiata

text: normal nodulation

text: root

text: Plant sample from Vigna radiata


Escherichia coli Q6269

text: IHU Mediterranean Infection

text: live

text: Pathogen.cl

characteristic: NCBI submission model

text: IHU Mediterranee infection

text: Urine

text: Urine

text: Urine

text: France

text: Homo sapiens

characteristic: host

text: Recurrent pyelonephritis

text: Urine

text: urine

text: 47.3 N 5.24 E

text: Escherichia coli

characteristic: strain

text: Pathogen: clinical or host-associated sample from Escherichia coli


Alkalihalobacillus clausii ZBDJF4

characteristic: External Id

text: Zytex Biotech Pvt. Ltd.

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: Sumaiya Ughratdar

characteristic: collected by

characteristic: collection date

text: Probiotic strain of commercial importance

characteristic: description

text: India: Gujarat

characteristic: geo loc name

text: Deepika Jeswani

characteristic: isolated by

text: cattle yard soil

characteristic: isolation source

text: Shouchella clausii

text: pure

characteristic: sample type

text: 37 degree C

characteristic: temp

text: Alkalihalobacillus clausii ZBDJF4


Alkalihalobacillus clausii ZBGE1

text: Zytex Biotech Pvt. Ltd.

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Microbe, viral or environmental

characteristic: SRA accession

text: probiotic strain of commercial importance

text: India: Madhya Pradesh

text: Avni Dedhia

text: pesticide contaminated farm soil

text: Shouchella clausii

characteristic: organism

text: pure

text: 37 degree C

text: Alkalihalobacillus clausii ZBGE1


text: Longyan University

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

text: China: Longyan

text: pig

characteristic: host

text: A pig farm in Longyan

characteristic: isolate

text: farm

text: Heyndrickxia coagulans

text: mixed culture

characteristic: strain

characteristic: title


characteristic: External Id

text: Longyan University

characteristic: INSDC center name

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

characteristic: collection date

text: China:longyan

text: Intestinal tract of pig

text: Heyndrickxia coagulans

text: cell culture

text: ly03 pacbio


text: Molecular Biophysics and Biochemistry, Yale University

text: live

text: Generic

text: Input

characteristic: antibody

text: S2 cells

characteristic: cell type

text: Drosophila melanogaster

text: Fruit fly derived cells

characteristic: treatment


text: Kipnis Lab, Pathology and Immunology, Washington University in Saint Louis

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: male

characteristic: Sex

text: 8 days

characteristic: age

characteristic: genotype

text: Drosophila melanogaster

text: brain

text: brain

characteristic: tissue

text: LP

text: Lactiplantibacillus plantarum-transferred (5-day ABX treatment + 3-day LP transfer) (LP)


characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: SRA accession

text: male

text: 8 days

text: Drosophila melanogaster

characteristic: organism

text: brain

text: brain

text: CTRL

text: conventionally reared (CTRL)


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: male

text: 8 days

text: Drosophila melanogaster

text: brain

text: brain

text: ABX

characteristic: title

text: antibiotic-treated (8 days) (ABX)


text: University of Wisconsin-Madison

text: live

text: MIMAG

characteristic: NCBI submission package

text: 287 m

characteristic: altitude

text: 276.73 milligram per liter

characteristic: ammonium

characteristic: collection date

text: Improved metagenome assembled genome from a thin stillage fermenting bioreactor

characteristic: description

text: 0 micromole per kilogram

text: bioreactor [ENVO:00002123]

text: anaerobic bioreactor [ENVO:00002124]

text: biological waste material [ENVO:01000373]

characteristic: environmental sample

text: USA: Madison, WI

characteristic: geo loc name

characteristic: isolate

text: anaerobic bioreactor effluent; Solids-removed thin stillage fed, 6 d SRT, 55C, pH 5.0

characteristic: isolation source

text: 43.073847 N 89.414083 W

characteristic: lat lon

text: bioreactor sludge metagenome

characteristic: metagenome source

characteristic: metagenomic

text: Heyndrickxia coagulans

characteristic: ph

text: anaerobe

text: Biomass centrifuged 10 min 10,000xg, aliquot frozen for DNA extraction

characteristic: samp mat process

text: Syringe

text: 1.5 milliliter

text: Freezer

text: -80 degree Celcius

text: metagenomic assembly

characteristic: sample-type

text: 54 degree Celcius

characteristic: temp

text: Bacillus coagulans MAG, UW_TS_BAC1_1

type: derived-from


name: Pantoea agglomerans DBM 3797 genome sample

characteristic: External Id

text: Brno University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Microbe, viral or environmental

characteristic: NCBI submission model

characteristic: SRA accession

text: 192 m

characteristic: culture collection

text: Czech Republic:Steknik

text: Humulus lupulus

characteristic: host

text: 50.3166292 N 13.6102039 E

text: Pantoea agglomerans

characteristic: organism

text: fresh green hop cones

characteristic: sample type

text: DBM 3797

characteristic: strain

text: Microbe sample from Pantoea agglomerans

characteristic: title