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text: missing

text: wildtype

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text: Mus musculus

text: Skeletal muscle

text: Skeletal muscle

text: RRBS, quadriceps, steady-state, WT-untrained, biol rep3

text: untrained, sedentary


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tag: attribute

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text: RRBS, quadriceps, steady-state, WT-untrained, biol rep2

characteristic: title

text: untrained, sedentary

characteristic: treatment


text: Biozentrum, University of Basel

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text: missing

text: wildtype

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text: Skeletal muscle

text: RRBS, quadriceps, steady-state, WT-untrained, biol rep1

text: untrained, sedentary


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characteristic: biospecimen repository

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characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

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characteristic: study design

text: Carcinoma, Ovarian Epithelial

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

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text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Ovary of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: Homo sapiens

characteristic: organism

text: female

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text: Carcinoma, Ovarian Epithelial

text: Yes

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characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Omentum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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characteristic: organism

text: female

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text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from L ovary with tube (path report not entirely clear) of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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characteristic: title


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text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Ovary/Tubes of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA sample from Ovary - Right of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


characteristic: External Id

text: dbGaP

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text: Homo sapiens

text: female

text: Case Set

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characteristic: study disease

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characteristic: submitted sample id

characteristic: submitted subject id

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text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from bilateral ovaries and tubes of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: diaphragm

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from diaphragm of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


characteristic: External Id

text: dbGaP

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characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Ovary - Left of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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characteristic: study disease

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text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

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text: Carcinoma, Ovarian Epithelial tumor DNA sample from Ovary - Left of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


characteristic: External Id

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text: Ovary - Left

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor RNA sample from Ovary - Left of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


text: dbGaP

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characteristic: biospecimen repository sample id

text: peritoneal biopsy

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text: High Grade Serous Ovarian Cancer

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from peritoneal biopsy of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

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text: Homo sapiens

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text: Carcinoma, Ovarian Epithelial

characteristic: study disease

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characteristic: subject is affected

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text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA sample from Omentum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


characteristic: External Id

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text: Yes

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text: female

characteristic: sex

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text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Bowel of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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text: female

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characteristic: study disease

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text: Yes

characteristic: subject is affected

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text: Homo sapiens

characteristic: organism

text: female

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text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA sample from Iliac left of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: Yes

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text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Omentum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


characteristic: External Id

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characteristic: INSDC center name

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characteristic: study disease

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text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

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text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Colon of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


characteristic: External Id

text: dbGaP

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text: GRU

text: High Grade Serous Ovarian Cancer

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Sigmoid colon metastasis of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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text: Carcinoma, Ovarian Epithelial

characteristic: study disease

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text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

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text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

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characteristic: is tumor

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characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Ovary of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


characteristic: External Id

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characteristic: study disease

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text: Yes

characteristic: subject is affected

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text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

text: Yes


characteristic: External Id

text: dbGaP

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characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

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text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from ant ut serosa of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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text: Homo sapiens

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text: Carcinoma, Ovarian Epithelial

characteristic: study disease

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text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

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text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA sample from Ovary - Left of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from L tube and ovary of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


characteristic: External Id

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characteristic: INSDC center name

characteristic: INSDC secondary accession

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text: Homo sapiens

text: female

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characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from colonic peritoneum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: Ovary - Left

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text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor RNA sample from Ovary - Left of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


characteristic: External Id

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characteristic: body site

text: GRU

text: High Grade Serous Ovarian Cancer

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

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text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA sample from Omentum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Peritoneum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from omental cake of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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text: Carcinoma, Ovarian Epithelial tumor RNA sample from co path report unclear, maybe R ovary? of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Omentum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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characteristic: title


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text: Carcinoma, Ovarian Epithelial tumor DNA sample from Ovary of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Bowel of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Appendix of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


characteristic: External Id

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characteristic: study disease

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text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Post sigmoid nodule of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Ovary of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: Yes

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characteristic: sex

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text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA sample from F. Tube - Right of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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characteristic: study disease

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characteristic: submitted sample id

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text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Ovary - Left of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Ovary/Tubes of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


text: dbGaP

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characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from traverse colon with omentum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


characteristic: External Id

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characteristic: INSDC center name

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characteristic: study disease

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characteristic: subject is affected

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text: Carcinoma, Ovarian Epithelial tumor DNA sample from Ovary - Left of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from omental biopsy of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


characteristic: External Id

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characteristic: histological type

text: Yes

characteristic: is tumor

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characteristic: sex

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characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA sample from Ovary - Right of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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characteristic: study disease

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text: Yes

characteristic: subject is affected

characteristic: submitted sample id

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text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from omentum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


characteristic: External Id

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text: High Grade Serous Ovarian Cancer

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text: Homo sapiens

characteristic: organism

text: female

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text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor RNA sample from R ovary mass of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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characteristic: histological type

text: Yes

characteristic: is tumor

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text: female

characteristic: sex

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characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from anterior peritoneal mass of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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characteristic: study name

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characteristic: subject is affected

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characteristic: submitter handle


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characteristic: organism

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text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Peritoneum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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text: Yes

characteristic: title


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text: Yes

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characteristic: title


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characteristic: study disease

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characteristic: subject is affected

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text: Yes

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text: Yes

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characteristic: sex

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text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA sample from Omentum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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characteristic: study disease

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text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

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characteristic: organism

text: female

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text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Ovary of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

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characteristic: sex

text: Case Set

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text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from TV colon mesentery nodule of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


characteristic: External Id

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characteristic: study disease

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characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

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text: Homo sapiens

characteristic: organism

text: female

text: Case Set

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text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from L ovary of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


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characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Bowel of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


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text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from sigmoid mass of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA/RNA

characteristic: biospecimen repository sample id

text: uterus, tubes, ovaries

characteristic: body site

text: GRU

text: High Grade Serous Ovarian Cancer

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from uterus, tubes, ovaries of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: DNA/RNA

text: Omentum

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Omentum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA/RNA

characteristic: analyte type

characteristic: biospecimen repository

text: L ovary and tube

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from L ovary and tube of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

text: Ovary - Left

characteristic: body site

text: GRU

text: High Grade Serous Ovarian Cancer

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA sample from Ovary - Left of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: RNA

text: Omental met

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Carcinoma, Ovarian Epithelial tumor RNA sample from Omental met of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

text: Metastasis within abdomen

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor RNA sample from Metastasis within abdomen of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA/RNA

characteristic: biospecimen repository sample id

text: Bowel Wall

characteristic: body site

text: GRU

text: High Grade Serous Ovarian Cancer

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from Bowel Wall of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: DNA

text: Pelvic lymph node

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Carcinoma, Ovarian Epithelial tumor DNA sample from Pelvic lymph node of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

text: Ovary

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA sample from Ovary of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

text: Ovary

characteristic: body site

text: GRU

text: High Grade Serous Ovarian Cancer

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

text: Yes

characteristic: title


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: DNA

text: Ovary - Left

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA/RNA

characteristic: analyte type

characteristic: biospecimen repository

text: Ovary

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

text: Generic

text: DNA

characteristic: biospecimen repository sample id

text: R ovary

characteristic: body site

text: GRU

text: High Grade Serous Ovarian Cancer

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA sample from R ovary of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

characteristic: INSDC secondary accession

text: live

text: Generic

text: DNA

text: omentum

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

characteristic: study disease

characteristic: study name

text: Yes

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Carcinoma, Ovarian Epithelial tumor DNA sample from omentum of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


text: dbGaP

characteristic: INSDC first public

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: RNA

characteristic: analyte type

characteristic: biospecimen repository

text: R ovary (surface)

text: GRU

text: High Grade Serous Ovarian Cancer

text: Yes

text: Homo sapiens

characteristic: organism

text: female

text: Case Set

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor RNA sample from R ovary (surface) of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response


characteristic: External Id

text: dbGaP

characteristic: INSDC center name

text: live

text: Generic

text: DNA/RNA

characteristic: biospecimen repository sample id

text: omentum nodule

characteristic: body site

text: GRU

text: High Grade Serous Ovarian Cancer

characteristic: histological type

text: Yes

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Case Set

characteristic: study design

text: Carcinoma, Ovarian Epithelial

text: Yes

text: Carcinoma, Ovarian Epithelial tumor DNA/RNA sample from omentum nodule of a human female participant in the dbGaP study CPTAC: Proteogenomic Studies of Ovarian Tumor Responses to Agents Targeting the DNA Damage Response

characteristic: title


text: Dumont lab, CHU Saint-Justine

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: mdx cells

characteristic: cell line

text: Satellite cells

characteristic: cell type

text: missing

text: missing

text: Mus musculus

text: Muscle

text: Muscle

characteristic: tissue

text: Muscle stem cells, PSB-KD-1, 3

characteristic: treatment


text: Dumont lab, CHU Saint-Justine

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: mdx cells

text: Satellite cells

text: missing

text: missing

text: Mus musculus

characteristic: organism

text: Muscle

text: Muscle

text: Muscle stem cells, PSB-KD-1, 2


characteristic: External Id

text: Dumont lab, CHU Saint-Justine

characteristic: INSDC center name

text: live

text: Generic

text: mdx cells

text: Satellite cells

text: missing

text: missing

text: Mus musculus

text: Muscle

text: Muscle

text: Muscle stem cells, PSB-KD-1, 1


text: Dumont lab, CHU Saint-Justine

text: live

text: Generic

text: mdx cells

text: Satellite cells

text: missing

text: missing

text: Mus musculus

text: Muscle

text: Muscle

text: Muscle stem cells, control 3

text: Control


text: Dumont lab, CHU Saint-Justine

text: live

text: Generic

text: mdx cells

text: Satellite cells

text: missing

text: missing

text: Mus musculus

text: Muscle

text: Muscle

text: Muscle stem cells, control 2

text: Control


text: Dumont lab, CHU Saint-Justine

text: live

text: Generic

text: mdx cells

text: Satellite cells

text: missing

text: missing

text: Mus musculus

text: Muscle

text: Muscle

text: Muscle stem cells, control 1

text: Control


text: Cell, Developmental, and Regenerative Biology, Mount Sinai School of Medicine

text: live

text: Generic

text: differentiation d18

characteristic: cell harvest

text: erythroid

text: missing

text: int1 indel

characteristic: genotype

text: missing

text: Homo sapiens

text: erythroid

characteristic: starting cells

text: int1 crispr RNP


characteristic: INSDC first public

text: live

text: Generic

text: differentiation d18

text: erythroid

text: missing

text: WT

text: missing

text: Homo sapiens

text: erythroid

characteristic: title

text: scrambled crispr RNP


Control 1

text: Dr Shakuntala Misra National Rehabilitation University

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: No treatment

text: Keywords: GSC:MIxS;MIMS:6.0

characteristic: description

text: Mouse Gut microbiome

text: Gut

text: Nuclease free water

text: India

text: Mus musculus

characteristic: host

text: 6 weeks

text: 26.8594 N 80.9308 E

text: mouse gut metagenome

text: Mus musculus Gut Microbiome


Control 2

text: live

text: No treatment

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mouse Gut microbiome

text: Gut

text: Nuclease free water

text: India

text: Mus musculus

text: 6 weeks

text: 26.8594 N 80.9308 E

text: mouse gut metagenome

text: Control Replicate 1

characteristic: replicate

text: Mus musculus Gut Microbiome


Control 3

text: live

characteristic: INSDC status

text: No treatment

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mouse Gut microbiome

text: Gut

text: Nuclease free water

text: India

text: Mus musculus

text: 6 weeks

text: 26.8594 N 80.9308 E

text: mouse gut metagenome

text: Control Replicate 2

text: Mus musculus Gut Microbiome


Low Dose 1

text: live

characteristic: NCBI submission model

text: Sodium arsenite- Low dose

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mouse Gut microbiome

text: Gut

text: Nuclease free water

text: India

text: Mus musculus

text: 6 weeks

text: 26.8594 N 80.9308 E

text: mouse gut metagenome

text: Mus musculus Gut Microbiome


Low Dose 2

text: live

characteristic: NCBI submission package

text: Sodium arsenite- Low dose

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mouse Gut microbiome

text: Gut

text: Nuclease free water

text: India

text: Mus musculus

text: 6 weeks

text: 26.8594 N 80.9308 E

text: mouse gut metagenome

text: Low dose Replicate 1

text: Mus musculus Gut Microbiome


Low Dose 3

text: live

characteristic: SRA accession

text: Sodium arsenite- Low dose

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mouse Gut microbiome

text: Gut

text: Nuclease free water

text: India

text: Mus musculus

text: 6 weeks

text: 26.8594 N 80.9308 E

text: mouse gut metagenome

text: Low dose Replicate 2

text: Mus musculus Gut Microbiome


High Dose 1

text: live

text: Sodium arsenite- High dose

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mouse Gut microbiome

text: Gut

text: Nuclease free water

text: India

text: Mus musculus

text: 6 weeks

text: 26.8594 N 80.9308 E

text: mouse gut metagenome

characteristic: organism

text: Mus musculus Gut Microbiome


High Dose 2

characteristic: External Id

text: live

text: Sodium arsenite- High dose

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mouse Gut microbiome

text: Gut

text: Nuclease free water

text: India

text: Mus musculus

text: 6 weeks

text: 26.8594 N 80.9308 E

text: mouse gut metagenome

text: High dose Replicate 1

text: Mus musculus Gut Microbiome


High Dose 3

characteristic: INSDC center name

text: live

text: Sodium arsenite- High dose

text: Keywords: GSC:MIxS;MIMS:6.0

text: Mouse Gut microbiome

text: Gut

text: Nuclease free water

text: India

text: Mus musculus

text: 6 weeks

text: 26.8594 N 80.9308 E

text: mouse gut metagenome

text: High dose Replicate 2

text: Mus musculus Gut Microbiome


text: Utah Public Health Laboratory Infectious Disease submission group

text: live

text: Pathogen.cl

characteristic: Tax ID

text: USA

text: Homo sapiens

text: missing

characteristic: isolate

text: urine

text: MLST-,PubMLSTecloacae

characteristic: mlst

text: Enterobacter ludwigii

characteristic: strain

text: Pathogen: clinical or host-associated sample from Enterobacter ludwigii


text: UCL

characteristic: INSDC first public

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: endothelial cells

text: endothelial cells

characteristic: tissue

text: Control mouse endothelial cells rep 2

characteristic: title

text: lentiviral transduction of control HA

characteristic: treatment


text: UCL

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

text: Generic

text: missing

text: missing

text: Mus musculus

text: endothelial cells

text: endothelial cells

text: Control mouse endothelial cells rep 1

text: lentiviral transduction of control HA


text: UCL

text: live

characteristic: INSDC status

text: Generic

text: missing

text: missing

text: Mus musculus

text: endothelial cells

text: endothelial cells

text: Nova2 over expression mouse endothelial cells rep 2

text: lentiviral transduction of HA-NOVA2


text: UCL

text: live

text: Generic

characteristic: NCBI submission model

text: missing

text: missing

text: Mus musculus

text: endothelial cells

text: endothelial cells

text: Nova2 over expression mouse endothelial cells rep 1

text: lentiviral transduction of HA-NOVA2


Georgenia sp. 10Sc9-8

text: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences

text: live

text: Microbe, viral or environmental

characteristic: NCBI submission package

text: China: Taklamakan desert in Xinjiang

text: soil

text: Georgenia halotolerans

text: pure culture

text: Microbe sample from Georgenia halotolerans

text: type strain of Georgenia halotolerans

characteristic: type-material


text: Stergachis lab, Medical Genetics, University of Washington

text: live

text: Generic

characteristic: SRA accession

text: HLE

characteristic: cell line

text: Lymphoblastoid cell line

characteristic: cell type

text: Hoolock leuconedys

characteristic: organism

text: HLE

text: HLE Fiber-seq

text: Eastern hoolock gibbon, female, Betty, Hoolock leuconedys (HLE) lymphoblastoid cell linenuclei treated with 200U Hia5 for 10min at 25C, 15kb shearing and pippin size selection


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: Lymphoblastoid cell line

text: Homo sapiens

text: GM14385/HG002 Fiber-seq

text: HG002/GM24385 nuclei treated with 200U Hia5 for 10min at 25C, 15kb shearing and pippin size selection


text: live

text: Generic

text: Complete hydatidiform mole cell line

text: Homo sapiens

text: CHM1 Fiber-seq

text: CHM1 nuclei treated with 200U Hia5 for 10min at 25C, 15kb shearing and pippin size selection


text: live

text: Generic

text: Complete hydatidiform mole cell line

text: Homo sapiens

text: CHM13 Fiber-seq

text: CHM13 nuclei treated with 200U Hia5 for 10min at 25C, 15kb shearing and pippin size selection


text: University of Massachusetts Chan Medical School

text: live

text: Metagenome or environmental

text: USA: Northeast Region

text: unclassified sequences; metagenomes; organismal metagenomes; human gut metagenome

characteristic: host

text: stool sample

text: not applicable

text: human gut metagenome

characteristic: sequentialID


characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: USA: Midwest Region

text: stool sample

text: not applicable

text: human gut metagenome


text: live

text: Metagenome or environmental

text: USA: South Region

text: stool sample

text: not applicable

text: human gut metagenome

characteristic: title


text: Anhui Medical University

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: Yersinia pestis EV76

characteristic: description

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided

text: 39.2614 N 115.4168 W

text: metagenome


text: Anhui Medical University

characteristic: INSDC last update

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: Yersinia pestis EV76

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided

text: 39.2615 N 115.4169 W

text: metagenome


text: Anhui Medical University

characteristic: INSDC secondary accession

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: Yersinia pestis EV76

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided

text: 39.2616 N 115.4170 W

text: metagenome


text: Anhui Medical University

text: live

characteristic: INSDC status

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: Yersinia pestis 201

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided

text: 39.2617 N 115.4171 W

text: metagenome


text: Anhui Medical University

text: live

text: MIMS.me

characteristic: NCBI submission model

text: MIGS/MIMS/MIMARKS.host-associated

text: Yersinia pestis 201

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided

text: 39.2618 N 115.4172 W

text: metagenome


text: Anhui Medical University

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

characteristic: NCBI submission package

text: Yersinia pestis 201

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided

text: 39.2619 N 115.4173 W

text: metagenome


AT

text: Anhui Medical University

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: Keywords: GSC:MIxS;MIMS:6.0

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided

text: 39.2620 N 115.4174 W

text: metagenome

text: AT


BT

text: Anhui Medical University

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: Keywords: GSC:MIxS;MIMS:6.0

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided

text: 39.2621 N 115.4175 W

text: metagenome

text: BT


BN

text: Anhui Medical University

text: live

text: MIMS.me

text: MIGS/MIMS/MIMARKS.host-associated

text: Keywords: GSC:MIxS;MIMS:6.0

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided

text: 39.2622 N 115.4176 W

text: metagenome

text: BN


text: Evolutionary Cancer Genomics, Research Division, Peter MacCallum Cancer Centre

text: live

text: Generic

text: melanoma cell

text: missing

text: WT

characteristic: genotype

text: missing

text: Homo sapiens

characteristic: tissue

text: A375 cell, CDK4/6 inhibition,6 days [SA-SPLICE19-4_S4]

text: CDK4/6 inhibition

characteristic: treatment


text: live

text: Generic

characteristic: SRA accession

characteristic: cell line

text: melanoma cell

characteristic: cell type

text: missing

text: WT

text: missing

text: Homo sapiens

text: A375 cell, CDK4/6 inhibition,6 days [SA-SPLICE19-3_S3]

text: CDK4/6 inhibition


characteristic: External Id

characteristic: INSDC center name

text: live

text: Generic

text: melanoma cell

text: missing

text: WT

text: missing

text: Homo sapiens

characteristic: organism

text: A375 cell, control,6 days [SA-SPLICE19-2_S2]

text: Control


characteristic: INSDC first public

text: live

text: Generic

text: melanoma cell

text: missing

text: WT

text: missing

text: Homo sapiens

text: A375 cell, control,6 days [SA-SPLICE19-1_S1]

text: Control


text: live

text: Generic

text: melanoma cell

text: missing

text: WT

text: missing

text: Homo sapiens

text: A375 cell, PRMT5 inhibition,72 hours [A375-CTX-72hr-2_S6]

characteristic: title

text: PRMT5 inhibition


text: live

text: Generic

text: melanoma cell

text: missing

text: WT

text: missing

text: Homo sapiens

text: A375 cell, PRMT5 inhibition,72 hours [A375-CTX-72hr-1_S3]

text: PRMT5 inhibition


text: live

text: Generic

text: melanoma cell

text: missing

text: WT

text: missing

text: Homo sapiens

text: A375 cell, CDK4/6 inhibition,72 hours [A375-PD991-72hr-2_S5]

text: CDK4/6 inhibition


text: live

text: Generic

text: melanoma cell

text: missing

text: WT

text: missing

text: Homo sapiens

text: A375 cell, CDK4/6 inhibition,72 hours [A375-PD991-72hr-1_S2]

text: CDK4/6 inhibition


text: live

text: Generic

text: melanoma cell

text: missing

text: WT

text: missing

text: Homo sapiens

text: A375 cell, control,72 hours [A375-DMSO-72hr-2_S4]

text: Control


text: live

text: Generic

text: melanoma cell

text: missing

text: WT

text: missing

text: Homo sapiens

text: A375 cell, control,72 hours [A375-DMSO-72hr-1_S1]

text: Control


text: dbGaP

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: peripheral blood

characteristic: body site

text: HMB-PUB-MDS

text: No

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Methods

characteristic: study design

characteristic: study name

text: No

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from peripheral blood of a human female participant in the dbGaP study Genome-Wide Analysis of Aberrant Position and Sequence of Plasma DNA Fragment Ends in Patients With Cancer


characteristic: External Id

text: dbGaP

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: peripheral blood

text: HMB-PUB-MDS

text: Yes

text: Homo sapiens

text: male

text: Methods

text: Liquid Biopsy

characteristic: study disease

text: Yes

text: Liquid Biopsy tumor DNA sample from peripheral blood of a human male participant in the dbGaP study Genome-Wide Analysis of Aberrant Position and Sequence of Plasma DNA Fragment Ends in Patients With Cancer


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: peripheral blood

characteristic: body site

text: HMB-PUB-MDS

text: Yes

text: Homo sapiens

characteristic: organism

text: male

text: Methods

text: Liquid Biopsy

text: Genome-Wide Analysis of Aberrant Position and Sequence of Plasma DNA Fragment Ends in Patients With Cancer

text: Yes

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

text: peripheral blood

text: HMB-PUB-MDS

text: No

characteristic: is tumor

text: Homo sapiens

text: female

characteristic: sex

text: Methods

characteristic: study design

characteristic: study name

text: No

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle


characteristic: External Id

text: dbGaP

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

text: DNA

text: peripheral blood

text: HMB-PUB-MDS

text: Yes

text: Homo sapiens

text: female

text: Methods

text: Liquid Biopsy

characteristic: study disease

text: Yes

text: Liquid Biopsy tumor DNA sample from peripheral blood of a human female participant in the dbGaP study Genome-Wide Analysis of Aberrant Position and Sequence of Plasma DNA Fragment Ends in Patients With Cancer


text: dbGaP

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: DNA

characteristic: analyte type

characteristic: biospecimen repository

characteristic: biospecimen repository sample id

text: peripheral blood

characteristic: body site

text: HMB-PUB-MDS

text: No

text: Homo sapiens

characteristic: organism

text: Methods

text: No

text: Non-tumor DNA sample from peripheral blood of a human participant in the dbGaP study Genome-Wide Analysis of Aberrant Position and Sequence of Plasma DNA Fragment Ends in Patients With Cancer

characteristic: title


text: dbGaP

text: live

text: Generic

text: DNA

text: peripheral blood

text: HMB-PUB-MDS

text: No

characteristic: is tumor

text: Homo sapiens

text: male

characteristic: sex

text: Methods

characteristic: study design

characteristic: study name

text: No

characteristic: subject is affected

characteristic: submitted sample id

characteristic: submitted subject id

characteristic: submitter handle

text: Non-tumor DNA sample from peripheral blood of a human male participant in the dbGaP study Genome-Wide Analysis of Aberrant Position and Sequence of Plasma DNA Fragment Ends in Patients With Cancer


characteristic: External Id

text: Peking university

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: MIMAG.soil

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: depth

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

characteristic: elev

text: paddy soil

text: paddy soil

text: straw

characteristic: environmental-sample

text: China: AnShun, Guizhou

characteristic: isolate

text: 0d patty soil

text: 26.05 N 105.77 E

text: soil metagenome

characteristic: metagenome-source

characteristic: metagenomic

text: Bacteroidota bacterium

text: metagenomic assembly

characteristic: sample-type

text: MIMAG Metagenome-assembled Genome sample from Bacteroidota bacterium

type: derived-from


text: Peking university

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: MIMAG.soil

text: Keywords: GSC:MIxS;MIMAG:6.0

text: paddy soil

text: paddy soil

text: straw

text: China: AnShun, Guizhou

text: 3d patty soil

text: 26.05 N 105.77 E

text: soil metagenome

text: Bacteroidota bacterium

characteristic: organism

text: metagenomic assembly

characteristic: title


characteristic: External Id

text: Peking university

text: live

text: MIMAG.soil

text: Keywords: GSC:MIxS;MIMAG:6.0

text: paddy soil

text: paddy soil

text: straw

text: China: AnShun, Guizhou

text: 7d patty soil

text: 26.05 N 105.77 E

text: soil metagenome

text: Bacteroidota bacterium

text: metagenomic assembly


text: Peking university

characteristic: INSDC last update

text: live

text: MIMAG.soil

text: Keywords: GSC:MIxS;MIMAG:6.0

text: paddy soil

text: paddy soil

text: straw

text: China: AnShun, Guizhou

text: 14d patty soil

text: 26.05 N 105.77 E

text: soil metagenome

text: Bacteroidota bacterium

text: metagenomic assembly


text: Peking university

text: live

characteristic: INSDC status

text: MIMAG.soil

text: Keywords: GSC:MIxS;MIMAG:6.0

text: paddy soil

text: paddy soil

text: straw

text: China: AnShun, Guizhou

text: 16d patty soil

text: 26.05 N 105.77 E

text: soil metagenome

text: Bacteroidota bacterium

text: metagenomic assembly


text: Peking university

text: live

text: MIMAG.soil

characteristic: NCBI submission model

text: Keywords: GSC:MIxS;MIMAG:6.0

text: paddy soil

text: paddy soil

text: straw

text: China: AnShun, Guizhou

text: 0d patty soil

text: 26.05 N 105.77 E

text: soil metagenome

text: Bacillota bacterium

text: metagenomic assembly

text: MIMAG Metagenome-assembled Genome sample from Bacillota bacterium


text: Peking university

text: live

text: MIMAG.soil

characteristic: NCBI submission package

text: Keywords: GSC:MIxS;MIMAG:6.0

text: paddy soil

text: paddy soil

text: straw

text: China: AnShun, Guizhou

text: 3d patty soil

text: 26.05 N 105.77 E

text: soil metagenome

text: Bacillota bacterium

text: metagenomic assembly


text: Peking university

text: live

text: MIMAG.soil

characteristic: depth

text: Keywords: GSC:MIxS;MIMAG:6.0

text: paddy soil

text: paddy soil

text: straw

text: China: AnShun, Guizhou

text: 7d patty soil

text: 26.05 N 105.77 E

text: soil metagenome

text: Bacillota bacterium

text: metagenomic assembly


text: Peking university

text: live

text: MIMAG.soil

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: description

text: paddy soil

text: paddy soil

text: straw

text: China: AnShun, Guizhou

text: 14d patty soil

text: 26.05 N 105.77 E

text: soil metagenome

text: Bacillota bacterium

text: metagenomic assembly


text: Peking university

text: live

text: MIMAG.soil

text: Keywords: GSC:MIxS;MIMAG:6.0

characteristic: elev

text: paddy soil

text: paddy soil

text: straw

text: China: AnShun, Guizhou

text: 16d patty soil

text: 26.05 N 105.77 E

text: soil metagenome

text: Bacillota bacterium

text: metagenomic assembly


text: Rudolf Jaenisch, Whitehead Institute

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: iPSC 7095

characteristic: cell line

text: iPSC-sensory neurons

characteristic: cell type

text: missing

text: WT

characteristic: genotype

text: missing

text: Homo sapiens

text: iPSC 7095

text: 48 hrs

characteristic: time

text: Sensory Neurons SARS_3

text: WA1/2020 SARS-CoV-2 infected

characteristic: treatment


text: Rudolf Jaenisch, Whitehead Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Generic

text: iPSC 7095

text: iPSC-sensory neurons

text: missing

text: WT

text: missing

text: Homo sapiens

characteristic: organism

text: iPSC 7095

text: 48 hrs

text: Sensory Neurons SARS_2

text: WA1/2020 SARS-CoV-2 infected


characteristic: External Id

text: Rudolf Jaenisch, Whitehead Institute

characteristic: INSDC last update

text: live

text: Generic

text: iPSC 7095

text: iPSC-sensory neurons

text: missing

text: WT

text: missing

text: Homo sapiens

text: iPSC 7095

text: 48 hrs

text: Sensory Neurons SARS_1

characteristic: title

text: WA1/2020 SARS-CoV-2 infected


text: Rudolf Jaenisch, Whitehead Institute

text: live

characteristic: INSDC status

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: iPSC 7095

text: iPSC-sensory neurons

text: missing

text: WT

text: missing

text: Homo sapiens

text: iPSC 7095

text: 0 hrs

text: Sensory Neurons MOCK_3

text: mock


text: Rudolf Jaenisch, Whitehead Institute

text: live

text: Generic

text: iPSC 7095

text: iPSC-sensory neurons

text: missing

text: WT

text: missing

text: Homo sapiens

text: iPSC 7095

text: 0 hrs

text: Sensory Neurons MOCK_2

text: mock


text: Rudolf Jaenisch, Whitehead Institute

text: live

text: Generic

text: iPSC 7095

text: iPSC-sensory neurons

text: missing

text: WT

text: missing

text: Homo sapiens

text: iPSC 7095

text: 0 hrs

text: Sensory Neurons MOCK_1

text: mock


text: Rudolf Jaenisch, Whitehead Institute

text: live

text: Generic

text: iPSC-sensory neurons and HEK293T cells

text: missing

text: missing

text: Homo sapiens

text: iPSC-sensory neurons and HEK293T cells

text: L1/L2 split-seq

text: multiplexed (none; mock; heat-inactivated SARS-CoV-2; Infection with WA1/2020 SARS-CoV-2; Infection with delta variant SARS-CoV-2; Infection with omicron variant SARS-CoV-2)


text: Department of Microbiology, Immunology & Molecular Genetics, University of Texas Health Science Center at San Antonio

text: live

text: Generic

characteristic: agent

text: fungal cells

text: missing

text: total RNA

characteristic: fraction

text: missing

text: Candida albicans

text: fungal cells


characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: SRA accession

text: fungal cells

text: missing

text: ribo

text: missing

text: Candida albicans

text: fungal cells


text: live

text: Generic

text: Fluconazole

text: fungal cells

characteristic: cell type

text: missing

text: total RNA

text: missing

text: Candida albicans

text: fungal cells


text: live

text: Generic

text: Fluconazole

text: fungal cells

text: missing

text: ribo

text: missing

text: Candida albicans

text: fungal cells


Soil T0

text: Italian National Research Council (CNR)

text: live

text: MIMARKS.survey

characteristic: depth

text: Keywords: GSC:MIxS;MIMARKS:6.0

characteristic: description

characteristic: elev

text: soil biomass T0

text: soil biomass T0

text: soil biomass

text: Italy:Rome

text: 42.102310 N 12.635007 E

text: soil metagenome

text: MIMARKS Survey related sample from soil metagenome


microcosms Control

text: Italian National Research Council (CNR)

characteristic: INSDC center name

text: live

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: soil biomass control

text: soil biomass control

text: soil biomass

text: Italy:Rome

text: 42.102310 N 12.635007 E

text: soil metagenome


Control + surfactant

text: Italian National Research Council (CNR)

characteristic: INSDC first public

text: live

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: soil biomass control + surfactant

text: soil biomass control + surfactant

text: soil biomass

text: Italy:Rome

text: 42.102310 N 12.635007 E

text: soil metagenome


Magnetite

text: Italian National Research Council (CNR)

text: live

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: soil biomass magnetite

text: soil biomass magnetite + surfactant

text: soil biomass

text: Italy:Rome

text: 42.102310 N 12.635007 E

text: soil metagenome

characteristic: organism


Magnetite + surfactant

characteristic: External Id

text: Italian National Research Council (CNR)

text: live

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: soil biomass magnetite + surfactant

text: soil biomass magnetite

text: soil biomass

text: Italy:Rome

text: 42.102310 N 12.635007 E

text: soil metagenome


Biochar

text: Italian National Research Council (CNR)

characteristic: INSDC last update

text: live

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: soil biomass biochar

text: soil biomass biochar

text: soil biomass

text: Italy:Rome

text: 42.102310 N 12.635007 E

text: soil metagenome


Biochar + surfactant

text: Italian National Research Council (CNR)

text: live

text: MIMARKS.survey

text: Keywords: GSC:MIxS;MIMARKS:6.0

text: soil biomass biochar + surfactant

text: soil biomass biochar + surfactant

text: soil biomass

text: Italy:Rome

text: 42.102310 N 12.635007 E

text: soil metagenome

characteristic: title


text: Medicine, University of Minnesota

text: live

characteristic: INSDC status

text: Generic

text: PLZ

characteristic: cell line

text: human iPSC

text: missing

text: myotube

characteristic: developmental stage

text: control line

characteristic: genotype

text: missing

text: Homo sapiens

text: PLZ

text: day 20

characteristic: time


text: Medicine, University of Minnesota

characteristic: INSDC secondary accession

text: live

text: Generic

characteristic: NCBI submission model

characteristic: NCBI submission package

text: PLZ

text: human iPSC

text: missing

text: myogenic progenitor

text: control line

text: missing

text: Homo sapiens

text: PLZ

text: day 13


text: Medicine, University of Minnesota

text: live

text: Generic

characteristic: SRA accession

text: NHP iPSC

characteristic: cell type

text: missing

text: myotube

text: control line

text: missing

text: Macaca fascicularis

text: day 20


text: Medicine, University of Minnesota

text: live

text: Generic

text: NHP iPSC

text: missing

text: myogenic progenitor

text: control line

text: missing

text: Macaca fascicularis

text: day 13


text: Medicine, University of Minnesota

text: live

text: Generic

text: NHP iPSC

text: missing

text: paraxial mesoderm

text: control line

text: missing

text: Macaca fascicularis

text: day 6


text: Medicine, University of Minnesota

text: live

text: Generic

text: NHP iPSC

text: missing

text: mesoderm

text: control line

text: missing

text: Macaca fascicularis

text: day 4


text: Medicine, University of Minnesota

text: live

text: Generic

text: NHP iPSC

text: missing

text: pluripotent

text: control line

text: missing

text: Macaca fascicularis

text: day 0


Eimeria tenella strain

text: China Agricultural University

text: live

text: Invertebrate

text: Arbor Acre

characteristic: breed

text: China:Beijing

text: Gallus gallus

characteristic: host

text: Houghton strain

characteristic: isolate

text: Caecum

text: Eimeria tenella

text: Caecum

characteristic: tissue

text: Invertebrate sample from Eimeria tenella


name: Cultured metagenome water sample Velika Vrbnica, Serbia

characteristic: External Id

text: MicroLife Solutions

characteristic: INSDC center name

characteristic: INSDC first public

text: live

text: Metagenome or environmental

text: Combined DNA sample derived from cultured ground water bacteria on three different media types (LA, ISP-2 and MSF) and 16S sequenced using Nanopore sequencing.

characteristic: description

text: Serbia: Velika Vrbnica

text: cultured bacterial colonies from ground water

text: 43.5251 N 21.1918 E

text: groundwater metagenome

characteristic: organism

text: aerobe

text: water sample was cultured on three media type plates (LA, ISP-2 and MSF) after which colonies were collected and combined for DNA isolation

text: DNA from combined bacterial colonies was isolated using the ZymoBIOMICS DNA Kit

text: 3-5 ml

text: Metagenome from cultured ground water sample Velika Vrbnica


name: Cultured metagenome water sample Obrenovacka Banja, Serbia

text: MicroLife Solutions

characteristic: INSDC last update

text: live

characteristic: INSDC status

text: Metagenome or environmental

text: Serbia: Obrenovacka Banja

text: 44.6570 N 20.2125 E

text: groundwater metagenome

text: aerobe

text: 3-5 ml

text: Metagenome or environmental sample from ground water metagenome

characteristic: title


name: Cultured metagenome water sample Lomnicki Kiseljak , Serbia

text: MicroLife Solutions

characteristic: INSDC secondary accession

text: live

text: Metagenome or environmental

text: Serbia: Lomnicki Kiseljak

text: 43.5110 N 21.3281 E

text: groundwater metagenome

text: aerobe

text: 3-5 ml