text: COLLECTED Greece by Consiglio Nazionale delle Ricerche

text: bread wheat

text: MG 27973

text: exome sequences of ExomeCapture-DAS5-001641 - .

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Greece

text: PI 469085

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :MG 27973


status: PUBLIC

characteristic: SRA accession

text: NB542437/4*CI 13438/2*CI 13438/Burt 5/PI 316002/CI 13438

characteristic: ancestory

text: DEVELOPED Washington, United States by Allan, R., USDA-ARS; Washington State University; Rubenthaler, G., USDA-ARS

characteristic: collected by

text: bread wheat

characteristic: common name

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-004310 - Restorer line for T. timopheevii cyto-male sterility. Plants medium height. Spikes lax, bearded, with white chaff. Seeds soft, white. Intermediate resistance to stripe rust.

characteristic: description

text: 2 week old

text: winter wheat

text: USA

characteristic: geographic location (country and/or sea)

text: PI 473556

characteristic: isolate

text: USDA Germplasm Resources Information Network

characteristic: lab host

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array40. The MCG method41 was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay12. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession.

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing reveals the role of historic wild relative introgressions in shaping the adaptive landscape of the wheat genome

characteristic: submission title

text: leaf

characteristic: variety

type: has member

Eduard Akhunov

Address: 1712 Claflin Road, Manhattan, KS 66506, USA

Fei He

FirstName: Fei

LastName: He


text: COLLECTED Yemen by Stewart, D., USDA-ARS

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-004257 - .

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Yemen

text: PI 429322

characteristic: lat lon

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: LANDRACE

characteristic: collected by

text: bread wheat

characteristic: common name

text: PERSIA 69

text: exome sequences of ExomeCapture-WATKINS-007470 - .

text: 2 week old

text: spring wheat

text: Iran

text: Australian Winter Cereals Collection (AWCC)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: CULTIVATED

text: bread wheat

text: UKRAINKA

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-003164 - .

characteristic: description

text: 2 week old

text: Russia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


characteristic: ancestory

text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000194 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

characteristic: isolate

text: AVS

characteristic: lab host

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus30296 = DOY1/AE.SQUARROSA (1016)


text: Teploklyuchenskaja/Felix

text: DEVELOPED Kyrgyzstan by. DONATED 07/14/1977 by N.I. Vavilov Institute of Plant Industry

text: bread wheat

text: Przevalskaja

text: exome sequences of ExomeCapture-DAS5-004555 - .

text: 2 week old

text: winter wheat

text: Kyrgyzstan

text: PI 418571

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :Przevalskaja;:WIR 48668


text: COLLECTED Spain by. DONATED 09/27/1949 by Estacao Agronomica Nacional

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-004012 - .

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Spain

text: PI 184602

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: variety


characteristic: SRA accession

text: Libero/3/Kenya/Sinai I//Mentana

text: DEVELOPED Macedonia, Greece by

characteristic: collected by

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-003599 - .

text: 2 week old

text: spring wheat

text: Greece

text: PI 225158

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: CULTIVATED

text: bread wheat

characteristic: common name

text: Espada

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-ESPADA - .

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: McMurachy Minn. 2698/Baladi

characteristic: ancestory

text: DEVELOPED Lima, Peru by Universidad Agraria

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-003909 - .

text: 2 week old

text: spring wheat

text: Peru

characteristic: geographic location (country and/or sea)

text: PI 205722

characteristic: isolate

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: Paix 13/Oscar Benoist

text: DEVELOPED Belgium by Station d'Amelioration des Plantes. DONATED 09/28/1950 by Estacion Experimental de Aula Dei

text: wheat

text: exome sequences of ExomeCapture-DAS5-003357 - .

text: 2 week old

text: spring wheat

text: Belgium

text: PI 190982

text: USDA Germplasm Resources Information Network

characteristic: lab host

text: Triticum aestivum subsp. sphaerococcum

characteristic: organism

text: Triticum aestivum subsp. sphaerococcum

characteristic: scientific name

text: subsp. sphaerococcum

text: leaf


text: DONATED England, United Kingdom by Plant Breeding Institute. DONATED 08/19/1970 by Popow, G., Swiss Federal Research Sta. for Agronomy

text: dinkel wheat

text: exome sequences of ExomeCapture-DAS5-004147 - .

text: 2 week old

text: spring wheat

text: United Kingdom

text: PI 355704

text: Triticum aestivum subsp. spelta

text: Triticum aestivum subsp. spelta

text: subsp. spelta

characteristic: sub species

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array40. The MCG method41 was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay12. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession.

characteristic: submission description

characteristic: submission identifier

text: Exome sequencing reveals the role of historic wild relative introgressions in shaping the adaptive landscape of the wheat genome

text: leaf


text: cms Arthur*3/TBR26-6-4

text: DEVELOPED 1995 Indiana, United States by Ohm, H., Purdue University; Johnson, J., University of Georgia - Griffin Campus; Patterson, F., Purdue University; Wickersham, D., DeKalb Genetics

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-004550 - Soft red winter R-line developed in a cms Arthur background with Triticum timopheevi cytoplasm and restorer gene(s) from TBR26-6-4. The TBR (Texas bulk restorer) line has an unknown source of male fertility restorer genes. Awnletted and 1 day later than Monon and 2 days earlier than Abe in heading. Resistant to powdery mildew. Selected for ability to restore male fertility in F1 hybrids with cms Monon and cms Redcoat.

text: 2 week old

characteristic: dev stage

text: winter wheat

characteristic: ecotype

text: USA

text: PI 591555

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf


characteristic: SRA accession

text: CULTIVATED

characteristic: collected by

text: bread wheat

text: BUCK METEORO

text: exome sequences of ExomeCapture-DAS5-002180

text: 2 week old

text: Argentina

text: Australian Winter Cereals Collection (AWCC)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: Breeding line

text: bread wheat

characteristic: common name

characteristic: cultivar

text: exome sequences of ExomeCapture-WSC-3-12 - .

text: 2 week old

text: spring wheat

text: USA

text: by Eduard Akhunov

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: COLLECTED Esfahan, Iran by FAO

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-003659 - .

characteristic: description

text: 2 week old

text: spring wheat

text: Iran

characteristic: geographic location (country and/or sea)

text: PI 243776

characteristic: lat lon

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: LANDRACE

text: bread wheat

text: UKRAINE W94472

text: exome sequences of ExomeCapture-DAS5-003162 - .

text: 2 week old

text: Russia

characteristic: isolate

characteristic: lab host

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: COLLECTED 1960 Northern Areas, Pakistan by Harlan, J., USDA-ARS

text: bread wheat

text: Dirk

text: exome sequences of ExomeCapture-DAS5-001341 - .

text: 2 week old

text: spring wheat

text: Pakistan

text: PI 270045

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf


text: CULTIVATED

text: bread wheat

text: BOBWHITE MPB26RH

text: exome sequences of ExomeCapture-DAS5-BOBWHITE

text: 2 week old

characteristic: dev stage

text: Mexico

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf


characteristic: SRA accession

text: DEVELOPED Tolbukhin, Bulgaria by Institute for Wheat & Sunflower Research

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-003415 - .

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Bulgaria

text: PI 564312

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf


text: LANDRACE

characteristic: collected by

text: bread wheat

characteristic: common name

text: AFGHANISTAN 2

text: exome sequences of ExomeCapture-WATKINS-007770 - .

text: 2 week old

text: spring wheat

text: Afghanistan

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: CULTIVATED

text: bread wheat

characteristic: cultivar

text: exome sequences of ExomeCapture-WATKINS-007472 - Hard / Red

characteristic: description

text: 2 week old

text: spring wheat

text: Canada

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: Breeding line

characteristic: ancestory

text: bread wheat

text: exome sequences of ExomeCapture-WSC-3-13 - .

text: 2 week old

text: spring wheat

text: USA

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: by Eduard Akhunov

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000496 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

text: AVS

characteristic: lab host

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array40. The MCG method41 was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay12. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession.

text: leaf

text: Aus34436 = DOY1/AE.SQUARROSA (511)


text: LANDRACE

text: bread wheat

text: ALICANTE 3

text: exome sequences of ExomeCapture-WATKINS-007127 - .

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Spain

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: Exome sequencing reveals the role of historic wild relative introgressions in shaping the adaptive landscape of the wheat genome

text: leaf


characteristic: SRA accession

text: COLLECTED Kyoto, Japan by. DONATED 09/12/1973 by Osorio, E., Universidade Federal Pelotas

text: bread wheat

text: Inayama

text: exome sequences of ExomeCapture-WSC-4-8 - .

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Japan

text: PI 382150

text: by Eduard Akhunov

characteristic: lat lon

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

text: :Inayama


text: CULTIVATED

characteristic: collected by

text: bread wheat

characteristic: common name

text: exome sequences of ExomeCapture-DAS5-000443 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

text: Aus34278 = 68.111/RGB-U//WARD/3/AE.SQUARROSA (328)

characteristic: variety


characteristic: ancestory

text: CULTIVATED

text: bread wheat

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-000985 - BC2F6 selection

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: Aus29662 = 68.111/RGB-U//WARD/3/FGO/4/RABI/5/AE.SQUARROSA (878)


text: LANDRACE

text: bread wheat

text: AFGHANISTAN 53

text: exome sequences of ExomeCapture-WATKINS-007049 - .

text: 2 week old

text: spring wheat

text: Afghanistan

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: Australian Winter Cereals Collection (AWCC)

characteristic: lab host

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: COLLECTED 09/26/1965 Ghowr, Afghanistan by Gray, J., Reading University

text: bread wheat

text: exome sequences of ExomeCapture-WSC-4-9 - .

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Afghanistan

text: PI 366905

text: by Eduard Akhunov

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf


characteristic: SRA accession

text: CULTIVATED

text: pasta wheat

text: KARKOVSKAJA 46

text: exome sequences of ExomeCapture-DAS5-002519 - .

text: 2 week old

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: submission identifier

text: leaf


text: DEVELOPED Santa Fe, Argentina by Vigliano, I.. DONATED 03/02/1954 by Vallega, J., Estacion Experimental Central

characteristic: collected by

text: bread wheat

characteristic: common name

text: D.I.V. 6723

text: exome sequences of ExomeCapture-DAS5-003299 - .

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Argentina

text: PI 213602

text: USDA Germplasm Resources Information Network

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: :D.I.V. 6723;:2972 H1208 50 261


text: LANDRACE

text: bread wheat

text: NAVARRE 53

text: exome sequences of ExomeCapture-WATKINS-007451 - .

text: 2 week old

text: spring wheat

text: Spain

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array40. The MCG method41 was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay12. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession.

characteristic: submission title

text: leaf

characteristic: variety


text: CULTIVATED

text: bread wheat

text: KLEIN ESCORPION

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-002566 - .

characteristic: description

text: 2 week old

text: Argentina

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: Exome sequencing reveals the role of historic wild relative introgressions in shaping the adaptive landscape of the wheat genome

text: leaf


text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-WATKINS-007705 - .

text: 2 week old

text: Brazil

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


characteristic: ancestory

text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000250 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

characteristic: isolate

text: AVS

characteristic: lab host

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus30635 = GAE.SQUARROSA (408)


text: CULTIVATED

text: bread wheat

text: FAVORITO

text: exome sequences of ExomeCapture-DAS5-002370 - Tan

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Argentina

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: CULTIVATED

text: bread wheat

text: DAN

text: exome sequences of ExomeCapture-DAS5-002267 - .

text: 2 week old

text: F

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf


text: CULTIVATED

characteristic: collected by

text: bread wheat

characteristic: common name

text: exome sequences of ExomeCapture-DAS5-000146 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

text: Aus30278 = GAE.SQUARROSA (268)


text: LANDRACE

text: bread wheat

text: CHINA 20

text: exome sequences of ExomeCapture-WATKINS-007212 - .

text: 2 week old

text: spring wheat

characteristic: ecotype

text: China

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: variety


text: CULTIVATED

text: bread wheat

text: KLEIN COMPACTA

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-002563 - .

characteristic: description

text: 2 week old

text: Argentina

characteristic: geographic location (country and/or sea)

text: Australian Winter Cereals Collection (AWCC)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: CULTIVATED

text: bread wheat

text: RED EGYPTIAN

text: exome sequences of ExomeCapture-DAS5-002920 - .

text: 2 week old

text: Egypt

characteristic: isolate

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


characteristic: ancestory

text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000503 - BC1F4 selection

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: AVS

characteristic: lab host

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus34438 = CPI/GEDIZ/3/GOO//JO69/CRA/4/AE.SQUARROSA (633)


characteristic: SRA accession

text: COLLECTED Greece by. COLLECTED Former Soviet Union by. DONATED 11/20/1930 by Dickson, J., USDA-Bureau of Plant Industry

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-003594 - .

text: 2 week old

text: spring wheat

text: Greece

text: PI 94570

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


text: bread wheat

text: exome sequences of ExomeCapture-WSC-1-9 - .

text: 2 week old

text: spring wheat

text: Indian Ocean

text: by Eduard Akhunov

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf


text: CULTIVATED

characteristic: collected by

text: bread wheat

characteristic: common name

text: Correll

text: exome sequences of ExomeCapture-DAS5-CORRELL - .

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array40. The MCG method41 was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay12. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession.

characteristic: submission identifier

text: leaf


text: CULTIVATED

text: bread wheat

text: DALNEVOSTOCNAJA

text: exome sequences of ExomeCapture-DAS5-002266 - .

text: 2 week old

text: Russia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: Exome sequencing reveals the role of historic wild relative introgressions in shaping the adaptive landscape of the wheat genome

characteristic: submission title

text: leaf

characteristic: variety


text: CULTIVATED

text: bread wheat

text: GIRCA 0274

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-002409 - .

characteristic: description

text: 2 week old

text: Russia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000035 - BC1F4 selection

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: isolate

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus29663 = CETA/AE.SQUARROSA (895)


text: CULTIVATED

text: pasta wheat

text: CAPPELLI

text: exome sequences of ExomeCapture-DAS5-002212

text: 2 week old

characteristic: dev stage

text: Italy

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: CULTIVATED

text: bread wheat

text: ODESSA

text: exome sequences of ExomeCapture-DAS5-002819 - .

text: 2 week old

text: Russia

characteristic: lab host

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-WATKINS-007285 - .

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


text: selection from male sterile-facilitated recurrent selection population CCA-1977

characteristic: ancestory

text: DEVELOPED 1983 Arizona, United States by Western Plant Breeders, Inc.

text: bread wheat

text: Apex 83

text: exome sequences of ExomeCapture-DAS5-001195 - .

text: 2 week old

text: spring wheat

text: USA

text: PI 601073

text: USDA Germplasm Resources Information Network

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf

text: :Apex 83;:WRP-8-30


text: CULTIVATED

characteristic: collected by

text: bread wheat

characteristic: common name

text: exome sequences of ExomeCapture-DAS5-000638 - BC2F6 selection

text: 2 week old

text: spring wheat

text: Australia

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

text: Aus29667 = SCOOP_1/AE.SQUARROSA (634)


text: CULTIVATED

text: pasta wheat

characteristic: cultivar

text: exome sequences of ExomeCapture-WATKINS-007288 - .

text: 2 week old

text: Russia

text: Australian Winter Cereals Collection (AWCC)

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: submission title

text: leaf

characteristic: variety


text: LANDRACE

text: bread wheat

text: GREECE 28

text: exome sequences of ExomeCapture-WATKINS-007093 - .

characteristic: description

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Greece

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: LANDRACE

text: bread wheat

text: INDIA 114

text: exome sequences of ExomeCapture-WATKINS-007585 - .

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Indian Ocean

characteristic: isolate

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: LANDRACE

text: bread wheat

text: YENISEI W43319

text: exome sequences of ExomeCapture-DAS5-003243 - .

text: 2 week old

text: Russia

characteristic: lab host

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array40. The MCG method41 was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay12. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession.

text: leaf


text: COLLECTED Lebanon by. DONATED 1972 by Hafiz, A., UN-FAO

text: bread wheat

text: Khosti

text: exome sequences of ExomeCapture-DAS5-001551 - .

text: 2 week old

text: spring wheat

text: Lebanon

text: CItr 15397

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

text: Exome sequencing reveals the role of historic wild relative introgressions in shaping the adaptive landscape of the wheat genome

text: leaf

text: :Khosti;:CI 15397


text: CULTIVATED

characteristic: collected by

text: pasta wheat

text: HEDBA 3

text: exome sequences of ExomeCapture-DAS5-002458 - .

text: 2 week old

text: Algeria

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: submission description

text: leaf


text: CULTIVATED

text: bread wheat

characteristic: common name

text: YRODY 1006

text: exome sequences of ExomeCapture-DAS5-003245 - .

text: 2 week old

text: Russia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf


text: CULTIVATED

text: bread wheat

text: BOL-BUGDA

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-002157 - Red

text: 2 week old

text: winter wheat

text: Russia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf


text: CULTIVATED

text: bread wheat

text: KZYL-CAS

text: exome sequences of ExomeCapture-DAS5-002649 - .

characteristic: description

text: 2 week old

text: Russia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: LANDRACE

text: pasta wheat

text: KARA KILCIK

text: exome sequences of ExomeCapture-DAS5-002515 - .

text: 2 week old

text: Russia

characteristic: geographic location (country and/or sea)

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

text: leaf


text: CULTIVATED

text: pasta wheat

text: RUSSIAN PERENNIAL

text: exome sequences of ExomeCapture-DAS5-002996 - Hard / White

text: 2 week old

characteristic: dev stage

text: F

characteristic: ecotype

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

text: leaf


characteristic: ancestory

text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000336 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

characteristic: isolate

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: Aus33410 = DOY1/AE.SQUARROSA (372)


characteristic: SRA accession

text: CULTIVATED

text: pasta wheat

text: HAURANI 27

text: exome sequences of ExomeCapture-DAS5-002454 - .

text: 2 week old

text: Lebanon

characteristic: lab host

text: Triticum turgidum subsp. durum

characteristic: organism

text: Triticum turgidum subsp. durum

text: subsp. durum

text: leaf


text: COLLECTED 1960 Kabul, Afghanistan by Harlan, J., USDA-ARS

characteristic: collected by

text: bread wheat

text: exome sequences of ExomeCapture-PI-268466 - .

text: 2 week old

text: spring wheat

text: Afghanistan

text: PI 268466

text: by Eduard Akhunov

characteristic: lat lon

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

text: leaf


text: CULTIVATED

text: bread wheat

characteristic: common name

text: MALAKOF ?

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-002708 - .

text: 2 week old

text: Russia

text: Australian Winter Cereals Collection (AWCC)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf


text: Sinvalocho/Petirrojo

text: DEVELOPED Colonia, Uruguay by Instituto Fitotecnico

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-004226 - .

characteristic: description

text: 2 week old

text: spring wheat

text: Uruguay

characteristic: geographic location (country and/or sea)

text: PI 225424

text: USDA Germplasm Resources Information Network

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: variety


text: CULTIVATED

text: pasta wheat

text: GIGANTE INGLES

text: exome sequences of ExomeCapture-DAS5-002406 - .

text: 2 week old

characteristic: dev stage

text: Portugal

characteristic: isolate

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array40. The MCG method41 was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay12. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession.

text: leaf


characteristic: SRA accession

characteristic: ancestory

text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000330 - BC1F4 selection

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: Exome sequencing reveals the role of historic wild relative introgressions in shaping the adaptive landscape of the wheat genome

text: leaf

characteristic: tissue type

text: Aus33408 = DOY1/AE.SQUARROSA (322)


text: LANDRACE

characteristic: collected by

text: bread wheat

text: VARNA 29

text: exome sequences of ExomeCapture-WATKINS-007565 - .

text: 2 week old

text: spring wheat

text: Bulgaria

characteristic: lab host

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: CULTIVATED

text: bread wheat

characteristic: common name

text: exome sequences of ExomeCapture-DAS5-000524 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

text: leaf

text: Aus34450 = 68.111/RGB-U//WARD/3/FGO/4/RABI/5/AE.SQUARROSA (629)


text: Bai Huo/Kanto 107//Ike

text: DEVELOPED Nebraska, United States by Graybosch, R., USDA-ARS

text: bread wheat

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-004527 - Winter habit waxy wheat (amylose-free).

text: 2 week old

text: F

text: USA

text: PI 619379

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :NWX008075;USA126:NSGC 8778


text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000574 - BC2F4 selection

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

text: Aus30299 = DVERD_2/AE.SQUARROSA (1027)


text: LANDRACE

text: bread wheat

text: LEON 9

text: exome sequences of ExomeCapture-WATKINS-007430 - .

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Spain

characteristic: isolate

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


characteristic: SRA accession

text: COLLECTED Turkmenistan by. DONATED 12/30/1959 by N.I. Vavilov Institute of Plant Industry

text: bread wheat

text: Kysyldzha

text: exome sequences of ExomeCapture-WSC-7-1 - .

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Turkmenistan

text: PI 262611

text: by Eduard Akhunov

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: :Kysyldzha;:WIR 40321


text: CULTIVATED

characteristic: collected by

text: bread wheat

text: DACHNAYA 7

text: exome sequences of ExomeCapture-DAS5-002261 - .

text: 2 week old

text: Ukraine

text: Australian Winter Cereals Collection (AWCC)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: bread wheat

text: RUMANIA 12

text: exome sequences of ExomeCapture-DAS5-002944 - .

text: 2 week old

text: Romania

characteristic: lab host

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: CULTIVATED

text: bread wheat

characteristic: common name

text: KUKRI

text: exome sequences of ExomeCapture-DAS5-002644 - .

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


text: CULTIVATED

text: bread wheat

text: Emmit

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-EMMIT - Hard white sptring wheat

text: 2 week old

text: spring wheat

text: Australia

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf


text: Topo 'S'/Narino 59*2//Budifen/3/Bobwhite 'S'/4/Pumafen//Ciano 'S'/Gallo

characteristic: ancestory

text: DEVELOPED Oregon, United States by Kronstad, W., Oregon State University

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-004166 - .

text: 2 week old

text: spring wheat

text: USA

text: PI 620694

text: USDA Germplasm Resources Information Network

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array40. The MCG method41 was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay12. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession.

characteristic: submission description

characteristic: submission identifier

text: leaf

text: :908164;USA126:NSGC 8124


text: DONATED by Macindoe, S., Glen Innes Experiment Farm. COLLECTED Egypt by. DONATED 1944 by Ausemus, E., USDA-Bureau of Plant Industry

text: bread wheat

text: Red Egyptian

text: exome sequences of ExomeCapture-DAS5-001797 - .

characteristic: description

text: 2 week old

text: spring wheat

text: Egypt

characteristic: geographic location (country and/or sea)

text: CItr 12345

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: Exome sequencing reveals the role of historic wild relative introgressions in shaping the adaptive landscape of the wheat genome

characteristic: submission title

text: leaf

text: :Red Egyptian;:C 12081;:CI 12345


text: selection from a composite population that was composed of the following F1 hybrids

text: DEVELOPED 2001 New York, United States by Sorrells, M., Cornell University; Bergstrom, G., Cornell University; Benscher, D., Cornell University

text: bread wheat

text: Richland

text: exome sequences of ExomeCapture-DAS5-004571 - Grain yield similar to Caledonia and averaged 6% higher grain yield than Geneva in 5 yrs. of regional testing in New York site. Test weight similar to Geneva and averaged 78.1 kg h1, 1 kg/h1 above Caledonia over 5 yrs. Similar in height to Geneva and averages 11 cm taller than Caledonia. Lodging resistance and winter hardiness similar to Geneva and slightly superior to Caledonia. Milling and baking characteristics are among the best for soft white winter wheats as deteremined by the USDA Soft Wheat Quality Lab., Wooster, OH. Susceptible to preharvest sprouting. Days to heading and maturity similar to most soft white winter cvs. grown in New York except Geneva which is 2 days earlier to reach anthesis. Stems and leaves yellow-green at booting and hollow white stems at maturity. At booting the flag leaf is erect and twisted and the stems have a waxy bloom. Spikes dense, tapering, and awnletted. Glumes tan, medium long, wide and have a square shoulder and an obtuse beak. Kernels soft white, ovate, have rounded cheeks and short brush, and a narrow, shallow crease. The mass of 1000 kernels averages 35g. Moderately resistant to prevalent races of loose smut (Ustilago tritici) and highly resistant to prevalent races of Powdery mildew (Erysiphe graminis). Susceptible to fusarium head blight (Fusarium graminearum), and highly resistant to wheat spindle streak, mosaic virus and soil borne mosaic virus.

text: 2 week old

characteristic: dev stage

text: winter wheat

text: USA

text: PI 632399

characteristic: isolate

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


characteristic: SRA accession

text: CULTIVATED

characteristic: collected by

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000826 - BC2F6 selection

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus29671 = GARZA/BOY//AE.SQUARROSA (165)


text: CULTIVATED

text: bread wheat

text: PRIBOI

text: exome sequences of ExomeCapture-DAS5-002888 - .

text: 2 week old

text: winter wheat

text: Russia

text: Australian Winter Cereals Collection (AWCC)

characteristic: lab host

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: Tohoku 78/Norin 39

text: DEVELOPED 1956 Iwate, Japan by. DONATED 10/31/1973 by Central Agricultural Experiment Station

text: bread wheat

characteristic: common name

text: Furutsu Masari

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-003731 - .

text: 2 week old

text: spring wheat

text: Japan

text: PI 383988

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf

text: :Furutsu Masari;:Norin 94;:Komugi Nourin 94;:Tohoku 105;:20052


characteristic: ancestory

text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000032 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf

text: Aus29663 = CETA/AE.SQUARROSA (895)


text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000820 - BC2F6 selection

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

text: Aus29682 = DOY1/AE.SQUARROSA (517)


text: DEVELOPED Oregon, United States by Kronstad, W., Oregon State University

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-004167 - .

text: 2 week old

characteristic: dev stage

text: spring wheat

text: USA

text: PI 620674

characteristic: isolate

text: USDA Germplasm Resources Information Network

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :908237;USA126:NSGC 8104


characteristic: SRA accession

text: CULTIVATED

characteristic: collected by

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000117 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array40. The MCG method41 was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay12. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession.

text: leaf

text: Aus30271 = GAE.SQUARROSA (163)

characteristic: variety


text: COLLECTED Graubunden, Switzerland by Popow, G., Swiss Federal Research Sta. for Agronomy

text: bread wheat

text: exome sequences of ExomeCapture-WSC-4-4 - .

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Switzerland

text: PI 349512

text: by Eduard Akhunov

characteristic: lab host

characteristic: lat lon

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: Exome sequencing reveals the role of historic wild relative introgressions in shaping the adaptive landscape of the wheat genome

text: leaf


text: CULTIVATED

text: bread wheat

characteristic: common name

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-000221 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: Aus30301 = CETA/AE.SQUARROSA (1027)


text: COLLECTED Azerbaijan by Central Transcaucasian Agric. Plant Breeding & Exp. Station

text: bread wheat

text: Kirda Boogda

text: exome sequences of ExomeCapture-DAS5-004465 - .

characteristic: description

text: 2 week old

text: winter wheat

text: Azerbaijan

text: PI 73361

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf

text: :Kirda Boogda;:1644;:CItr 9231;:CI 9231


text: LANDRACE

text: bread wheat

text: DIOSEQ 3

text: exome sequences of ExomeCapture-WATKINS-007099 - .

text: 2 week old

characteristic: dev stage

text: spring wheat

text: not provided

characteristic: geographic location (country and/or sea)

text: Australian Winter Cereals Collection (AWCC)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf


characteristic: SRA accession

text: COLLECTED Arusha, Tanzania by Director of Agriculture

text: bread wheat

text: B 192

text: exome sequences of ExomeCapture-DAS5-001205 - .

text: 2 week old

text: spring wheat

text: Tanzania

text: PI 203080

characteristic: isolate

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :B 192


text: CULTIVATED

characteristic: collected by

text: bread wheat

text: HATIF INVERSABLE

text: exome sequences of ExomeCapture-DAS5-002453 - .

text: 2 week old

text: France

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: CULTIVATED

text: bread wheat

text: CHERNOUSKA DURUM

text: exome sequences of ExomeCapture-DAS5-002236

text: 2 week old

text: Russia

characteristic: lab host

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: Separation of species from PI 372447

characteristic: ancestory

text: COLLECTED 1968 Cyprus by Bennett, E., Crop Ecology & Genetic Resources Unit

text: bread wheat

text: FAO 29.913

text: exome sequences of ExomeCapture-DAS5-003480 - .

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Cyprus

text: PI 608795

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: :FAO 29.913;USA126:NSGC 7606


text: CULTIVATED

text: bread wheat

characteristic: common name

text: TRINTANI

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-003134 - .

text: 2 week old

text: spring wheat

text: Brazil

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


text: COLLECTED Angola by. DONATED 09/28/1950 by Estacao de Melhoramento de Plantas

text: bread wheat

text: Regional Mocho

text: exome sequences of ExomeCapture-DAS5-001803 - .

characteristic: description

text: 2 week old

text: spring wheat

text: Angola

text: PI 192198

text: USDA Germplasm Resources Information Network

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf

characteristic: tissue type

text: :Regional Mocho;:3641


text: COLLECTED 11/1954 East Azerbaijan, Iran by Smith, E., USDA-ARS

text: bread wheat

text: exome sequences of ExomeCapture-WSC-7-2 - .

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Iran

characteristic: geographic location (country and/or sea)

text: PI 222669

text: by Eduard Akhunov

characteristic: lat lon

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array40. The MCG method41 was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay12. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession.

characteristic: submission description

text: leaf


characteristic: SRA accession

text: CULTIVATED

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000058 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

characteristic: isolate

text: AVS

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: Exome sequencing reveals the role of historic wild relative introgressions in shaping the adaptive landscape of the wheat genome

characteristic: submission title

text: leaf

text: Aus30262 = DOY1/AE.SQUARROSA (333)


characteristic: ancestory

text: CULTIVATED

characteristic: collected by

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-000358 - BC1F4 selection

text: 2 week old

text: spring wheat

text: Australia

text: AVS

characteristic: lab host

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus34232 = DOY1/AE.SQUARROSA (188)

characteristic: variety


text: CULTIVATED

text: bread wheat

characteristic: common name

text: DIAMOND

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-002283 - .

text: 2 week old

text: Finland

text: Australian Winter Cereals Collection (AWCC)

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: LANDRACE

text: pasta wheat

text: DIGRAK

text: exome sequences of ExomeCapture-DAS5-002287 - .

characteristic: description

text: 2 week old

text: Turkey

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

characteristic: scientific name

text: subsp. durum

characteristic: sub species

text: leaf


text: CULTIVATED

text: bread wheat

text: SARY-BIDAJ

text: exome sequences of ExomeCapture-DAS5-003026 - Red

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Russia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: F1518 (Mexico)//Kafue/Mara 13D

text: DEVELOPED Zimbabwe by. DONATED 09/1983 by Kilpatrick, R., Small Grain Centre

text: bread wheat

text: Shashi

text: exome sequences of ExomeCapture-DAS5-001850 - .

text: 2 week old

text: spring wheat

text: Zimbabwe

text: PI 479669

characteristic: isolate

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

text: leaf

text: :Shashi;:S.A. 1345


text: Fertility Restorer/Gaines//Norin 53/3/Kite sib

characteristic: ancestory

text: DONATED 09/1981 by Australian Winter Cereals Collection. DEVELOPED 1981 Australia by Dekalb Shand Seed Company, Limited

text: bread wheat

text: Terra

text: exome sequences of ExomeCapture-DAS5-001910 - Terra is the male parent of Hybrid Titan.

text: 2 week old

text: spring wheat

text: Australia

text: PI 464646

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

characteristic: submission title

text: leaf

text: :Terra;:AUS 20911


text: KS63GH279//3*CI 13438/Burt 8

text: DEVELOPED Washington, United States by Allan, R., USDA-ARS; Washington State University; Rubenthaler, G., USDA-ARS

characteristic: collected by

text: bread wheat

text: exome sequences of ExomeCapture-DAS5-004299 - Restorer line for T. timopheevii cyto-male sterility. One gene semidwarf. Spikes lax, bearded, with white chaff. Seeds soft, white. Intermediate resistance to stripe rust.

text: 2 week old

text: W-S

text: USA

text: PI 473550

characteristic: lab host

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: CULTIVATED

text: bread wheat

characteristic: common name

text: KUBANSKAJA 24

characteristic: cultivar

text: exome sequences of ExomeCapture-DAS5-002640 - .

text: 2 week old

text: Russia

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: DEVELOPED 1962 Angola by Goncalves de Macedo, V., Inst. Investigacao Agronomicos Angola

text: bread wheat

text: Maia do Vale

text: exome sequences of ExomeCapture-DAS5-001610 - .

characteristic: description

text: 2 week old

text: spring wheat

text: Angola

text: PI 344017

text: USDA Germplasm Resources Information Network

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :Maia do Vale


text: LANDRACE

text: bread wheat

text: RUMANIA 4

text: exome sequences of ExomeCapture-WATKINS-007515 - .

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Romania

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array40. The MCG method41 was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay12. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession.

text: Exome sequencing reveals the role of historic wild relative introgressions in shaping the adaptive landscape of the wheat genome

text: leaf


characteristic: SRA accession

text: selection from Russian population

text: DEVELOPED 1941 Finland by Central Experiment Station of Finland

text: bread wheat

text: Kimmo

text: exome sequences of ExomeCapture-DAS5-001553 - .

text: 2 week old

text: spring wheat

text: Finland

text: PI 181469

characteristic: isolate

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :Kimmo


text: CULTIVATED

text: bread wheat

text: STEPHENS

text: exome sequences of ExomeCapture-DAS5-003074 - Soft / White

text: 2 week old

text: winter wheat

text: USA

text: Australian Winter Cereals Collection (AWCC)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

text: leaf


text: US 60-43/Aurora//Fiorello/Bezostaia 1

characteristic: ancestory

text: DEVELOPED Romania by. DONATED 10/1987 by Moseman, J., USDA-ARS

characteristic: collected by

text: bread wheat

text: Transelvania 1

text: exome sequences of ExomeCapture-DAS5-004609 - Resistance to yellow (stripe) rust.

text: 2 week old

text: winter wheat

text: Romania

text: PI 519267

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :Transelvania 1;:Turda 141


text: LANDRACE

text: bread wheat

characteristic: common name

text: CHINA Sh8

text: exome sequences of ExomeCapture-WATKINS-007263 - .

text: 2 week old

text: spring wheat

text: China

characteristic: lab host

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: Domestic cat

text: Heart sample TS_DSH_HCMcase11

characteristic: description

text: Felis catus

characteristic: organism

text: Felis catus

text: Identification of hypertrophic cardiomyopathy associated variants in cats

text: ID HCM associated variants in cats

Name: Animal Genetics Laboratory:LDG, Faculty of Veterinary Sciences, Ghent University

Address: Heidestraat 19, 9820 Merelbeke, Belgium

Tom Schipper

FirstName: Tom

LastName: Schipper


text: Domestic cat

text: Heart sample TS_BSH_HCMcase19

text: Felis catus

text: Felis catus

characteristic: scientific name

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase1

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_MC_HCMcase23

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase6

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase8

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_BSH_HCMcase20

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_MC_HCMcase22

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase4

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase2

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase15

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_BSH_HCMcase18

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_RD_HCMcase25

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSHxP_HCMcase26

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_BLH_HCMcase24

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_MC_HCMcase21

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase5

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase12

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase9

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase13

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase14

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase17

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase16

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase7

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase3

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


text: Domestic cat

text: Heart sample TS_DSH_HCMcase10

text: Felis catus

text: Felis catus

text: ID HCM associated variants in cats


unit: year

characteristic: animal age at collection

text: reticulum from an adult female texel x blackface sheep, OAR_RI_AF1

text: adult

characteristic: developmental stage

text: fed

characteristic: fasted status

text: normal

characteristic: health status at collection

text: specimen from organism

characteristic: material

text: Ovis aries

text: ruminant reticulum

characteristic: organism part

text: FAANG

characteristic: project

unit: YYYY-MM-DD

characteristic: specimen collection date

characteristic: specimen collection protocol

text: The Roslin Institute Sheep Gene Expression Atlas Project

text: Roslin Sheep Atlas

type: derived from

BBSRC

Role: funder

Address: Polaris House, North Star Avenue, Swindon, Wiltshire, SN2 1UH

EMBL-EBI

Role: curator

Address: Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom

Name: The Roslin Institute and Royal Dick School of Veterinary Studies

Role: biomaterial provider

Address: Easter Bush Campus, Edinburgh, Midlothian, EH25 9RG

Role: institution

Alan Archibald

FirstName: Alan

LastName: Archibald

MidInitials: L

Role: Investigator

Bruce Whitelaw

FirstName: Bruce

LastName: Whitelaw

MidInitials: C

David Hume

FirstName: David

LastName: Hume

MidInitials: A

Emily Clark

FirstName: Emily

LastName: Clark

Role: experiment performer

Role: submitter

Kim Summers

FirstName: Kim

LastName: Summers

MidInitials: M

Mary McCulloch

FirstName: Mary

LastName: McCulloch

MidInitials: B

Mick Watson

FirstName: Mick

LastName: Watson

Stephen Bush

FirstName: Stephen

LastName: Bush

MidInitials: J

Role: data analyst


characteristic: SRA accession

text: ileum from an adult male texel x blackface sheep, OAR_RI_AM1

text: adult

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: ileum

text: FAANG

characteristic: submission description

characteristic: submission identifier

text: Roslin Sheep Atlas


text: thymus from an adult male texel x blackface sheep, OAR_RI_AM1

text: adult

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: thymus

text: FAANG

text: Roslin Sheep Atlas

characteristic: submission title


text: jejunum from an adult male texel x blackface sheep, OAR_RI_AM2

text: adult

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: jejunum

text: FAANG

text: Roslin Sheep Atlas


Early Pregnancy Probability _ Nellorre

text: caudal hair follicle

characteristic: cell type

text: Marina Mortati Dias Barbero

characteristic: collected by

text: Cattle

characteristic: common name

text: EPP1_Nellorre - DNA extraction from caudal hair follicle to study the genes XKR-4, ESRRG, PAPP-A, PAPP-A2, STF-1

text: Brazil

characteristic: geographic location (country and/or sea)

text: Bahia

characteristic: geographic location (region and locality)

text: Bos indicus

text: Bos indicus

text: female

characteristic: sex

text: The early pregnancy probability (OPP) in heifers is a trait of high economic value for Nellore. However, the variability among heifers is not always detected because most breeders do not expose heifers while still young. The aim of this study was identify polymorphisms in the genes XKR-4, ESRRG, PAPP-A, PAPP-A2, STF-1 previously associated with (OPP). Three hundred and eighty heifers were sequenced in the exon regions of the candidate genes with MiSeq® sequencer. Nine polymorphisms were detected in the PAPP-A gene, 9 in the XKR4 gene, 24 in the ESRRG gene, and 49 in the PAPP-A2 gene, these polymorphisms found to have been reported in other races, no polymorphism was found in the SFTPA-1 gene. We also detected 39 new polymorphisms that have not yet been described in bos taurus and bos indicus and are not registered in the NCBI database, and of these 12 polymorphisms were found in the XKR4 gene, 16 in the ESRRG gene and 11 in the PAPP-A2 gene. The association analysis showed that the none of the SNP and haplotype had a significant effect (p <0.05) for OPP in Nellore heifers. This study showed that the PAPP-A and XKR4 and ESRRG and PAPP-A2 genes are polymorphic in the Nelore breed, in the SFTPA-1 gene no polymorphisms were found in the Nellore breed. The influence of these markers on the characteristic occurrence of precocious pregnancy was not verified. Forty-nine new polymorphisms were found in the PAPP-A2, XKR-4 and ESRRG genes.

text: Polymorphisms in genes associated with puberty and occurrence of early pregnancy in beef cattle

Laboraótio de Genética Molecular

Address: Via de Acesso Prof.Paulo Donato Castellane s/n 14884-900 - Jaboticabal, SP

Marina Barbero

FirstName: Marina

LastName: Barbero


unit: day

characteristic: animal age at collection

text: peyers patch from a female one week old texel x blackface lamb, OAR_RI_L7

characteristic: description

text: neonate

characteristic: developmental stage

text: fed

characteristic: fasted status

text: normal

text: specimen from organism

text: Ovis aries

characteristic: organism

text: Peyer's patch

text: FAANG

text: Roslin Sheep Atlas


text: abomasum from an adult male texel x blackface sheep, OAR_RI_AM3

text: adult

text: fed

text: normal

characteristic: health status at collection

text: specimen from organism

characteristic: material

text: Ovis aries

text: abomasum

characteristic: organism part

text: FAANG

characteristic: project

characteristic: specimen collection date

text: Roslin Sheep Atlas


characteristic: SRA accession

text: alveolar macrophage

text: alveolar macrophages from an adult male TxBF sheep

text: cell specimen

text: Ovis aries

text: mixed sample

text: FAANG

text: https://data.faang.org/api/fire_api/samples/ ROSLIN_SOP_Isolation_of_Macrophages_from_Lungs_Blood_and_Bone_Marrow_of_Large_Animals_20160516.pdf

characteristic: purification protocol

characteristic: submission description

characteristic: submission identifier

text: Roslin Sheep Atlas

characteristic: submission title


text: spotted scat

characteristic: common name

characteristic: date received

text: adult

text: Scatophagidae

characteristic: family

text: organism part

text: Eupercaria insertae sedis

characteristic: order

text: Scatophagus argus

text: gill

text: VGP

text: Byrappa Venkatesh

characteristic: provider

text: The Vertebrate Genomes Project aims to build reference quality genome assemblies for hundreds to thousands of vertebrate species.

text: VGP - Vertebrate Genomes Project

characteristic: tissue storage

Wellcome Trust Sanger Institute

Address: Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK


text: orbiculate cardinalfish

text: adult

characteristic: developmental stage

text: Apogonidae

text: organism part

text: Kurtiformes

text: Sphaeramia orbicularis

characteristic: organism

text: gill

text: VGP

text: Byrappa Venkatesh

text: VGP - Vertebrate Genomes Project


text: channel bull blenny

text: adult

text: Bovichtidae

text: organism part

characteristic: material

text: Perciformes

text: Cottoperca gobio

text: muscle

text: VGP

text: T. Desvignes/ J. Postlethwait

characteristic: provider id

text: VGP - Vertebrate Genomes Project

text: RNAlater


text: channel bull blenny

text: adult

text: Bovichtidae

text: organism part

text: Perciformes

text: Cottoperca gobio

text: gonad

characteristic: organism part

text: VGP

characteristic: project

text: T. Desvignes/ J. Postlethwait

text: VGP - Vertebrate Genomes Project

text: RNAlater


characteristic: SRA accession

text: live sharksucker

text: adult

text: Echeneidae

text: organism part

text: Carangiformes

text: Echeneis naucrates

text: gill

text: VGP

text: Byrappa Venkatesh

text: Sharksucker

text: VGP - Vertebrate Genomes Project

text: RNA, flash_frozen


text: banded archerfish

text: adult

text: Toxotidae

text: organism part

text: Carangaria insertae sedis

text: Toxotes jaculatrix

text: gill

text: VGP

text: Byrappa Venkatesh

text: VGP - Vertebrate Genomes Project


text: convict blenny

text: adult

text: Pholidichthyidae

text: organism part

text: Cichliformes

text: Pholidichthys leucotaenia

text: gill

text: VGP

text: Byrappa Venkatesh

text: VGP - Vertebrate Genomes Project

text: RNA


text: Boeseman's rainbowfish

text: adult

text: Melanotaeniidae

text: organism part

text: Atheriniformes

text: Melanotaenia boesemani

text: gill

text: VGP

text: Byrappa Venkatesh

text: VGP - Vertebrate Genomes Project


text: jewelled blenny

text: adult

text: Blenniidae

text: organism part

text: Blenniiformes

text: Salarias fasciatus

text: gill

text: VGP

text: Byrappa Venkatesh

text: VGP - Vertebrate Genomes Project


text: copperband butterflyfish

text: adult

text: Chaetodontidae

text: organism part

text: Chaetodontiformes

text: Chelmon rostratus

text: gill

text: VGP

text: Byrappa Venkatesh

text: VGP - Vertebrate Genomes Project


text: pinecone soldierfish

text: adult

text: Holocentridae

text: organism part

text: Holocentriformes

text: Myripristis murdjan

text: ovary

text: VGP

text: Byrappa Venkatesh

text: Soldierfish gDNA

text: VGP - Vertebrate Genomes Project

text: HMW DNA


text: whitecheek surgeonfish

text: adult

text: Acanthuridae

text: organism part

text: Acanthuriformes

text: Acanthurus nigricans

text: gill

text: VGP

text: Byrappa Venkatesh

text: VGP - Vertebrate Genomes Project


text: channel bull blenny

text: adult

text: Bovichtidae

text: organism part

text: Perciformes

text: Cottoperca gobio

text: brain

text: VGP

text: T. Desvignes/ J. Postlethwait

text: VGP - Vertebrate Genomes Project

text: RNAlater


characteristic: animal age at collection

text: testes from an adult male texel x blackface sheep, OAR_RI_AM3

characteristic: description

text: adult

text: fed

characteristic: fasted status

text: normal

characteristic: health status at collection

text: specimen from organism

text: Ovis aries

text: testis

text: FAANG

characteristic: specimen collection date

characteristic: specimen collection protocol

text: Roslin Sheep Atlas


text: skeletal muscle bicep from an adult male texel x blackface sheep, OAR_RI_AM2

text: adult

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: skeletal muscle tissue of biceps brachii

text: FAANG

characteristic: submission description

characteristic: submission identifier

text: Roslin Sheep Atlas

characteristic: submission title


text: adrenal gland medulla from an adult male texel x blackface sheep, OAR_RI_AM1

text: adult

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: adrenal medulla

text: FAANG

text: Roslin Sheep Atlas


text: tonsil from an adult male texel x blackface sheep, OAR_RI_AM3

text: adult

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: tonsil

text: FAANG

text: Roslin Sheep Atlas


text: pituitary gland from an adult female texel x blackface sheep, OAR_RI_AF3

text: adult

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: pituitary gland

text: FAANG

text: The Roslin Institute Sheep Gene Expression Atlas Project

text: Roslin Sheep Atlas


text: duodenum from a male one week old texel x blackface lamb, OAR_RI_L6

text: neonate

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: duodenum

text: FAANG

text: Roslin Sheep Atlas


text: Sus scrofa

text: Sus scrofa

characteristic: scientific name

text: Due to the fact that genetic analysis of the whole mtDNA has been an efficient and widely used tool in understanding evolution and diversity of several animal species, we present a large-scale study on geographic variation in the complete mtDNA genomes of wild boars from Russia (including West Siberia and Eastern Caucasus), Europe, and North-Africa. Our results provide insights into the contemporary genetic structure and past demographic processes of wild boar populations under the effects of glaciations and possible human manipulations.

text: Maternal genomic variability of the wild boar (Sus scrofa) in West-Russia, Europe and North-Africa

Animal Genetics Laboratory

Address: Animal Genetics Laboratory, Faculty of Agricultural and Food Sciences and Environmental Management, University of Debrecen, Böszörményi 138, 4032 Debrecen, Hungary

Address: Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, PB 76169-133, Iran

Fisheries Laboratory

Address: Department of Fisheries, Beekeeping, Game Management and Special Zoology, Faculty of Agriculture, University of Zagreb, Svetošimunska cesta 25, 10000 Zagreb, Croatia

Forestry Laboratory

Address: Faculty of Forestry, Technical University in Zvolen, TG Masaryka 24, 960 53 Zvolen, Slovakia

Laboratory of Animal Ecology

Address: Caspian Institute of Biological Resources, ul. M. Gajieva 45, 36700, Makhachkala, Republic of Dagestan, Russian Federation

Laboratory of Biology

Address: Department of Veterinary Medicine, University of Sassari, via Vienna 2, I-07100 Sassari, Italy

Name: Laboratory of Ecology and Conservation of Animals

Address: Pacific Geographical Institute FEB RAS, 7 Radio St., 690041, Vladivostok, Russia

Laboratory of Game Animals Ecology,

Address: Department of Game Animals’ Ecology, Institute of Plant and Animal Ecology，Ural Branch of Russian Academy of Sciences，8 Marta 202a，620144,Yekaterinburg，Russia

Address: State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China

Ali Esmailizadeh

FirstName: Ali

LastName: Esmailizadeh

Cui-Ping Huang

FirstName: Cui-Ping

LastName: Huang

Elmar Babaev

FirstName: Elmar

LastName: Babaev

Hai-Bing Xie

FirstName: Hai-Bing

LastName: Xie

Ivan V. Seryodkin

FirstName: Ivan

LastName: V. Seryodkin

Ladislav Paule

FirstName: Ladislav

LastName: Paule

Massimo Scandura

FirstName: Massimo

LastName: Scandura

Nickolay Markov

FirstName: Nickolay

LastName: Markov

Nikica Šprem

FirstName: Nikica

LastName: Šprem

Saber Khederzadeh

FirstName: Saber

LastName: Khederzadeh

Szilvia Kusza

FirstName: Szilvia

LastName: Kusza

Ya-Ping Zhang

FirstName: Ya-Ping

LastName: Zhang


text: Sus scrofa

text: Sus scrofa

Name: State Key Laboratory of Genetic Resources and Evolution, Yunnan Laboratory of Molecular Biology of Domestic Animals


YT

text: 26 healthy Yorkshire terrier - EDTA blood samples

text: Belgium

characteristic: geographic location (country and/or sea)

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Identification of causal variation in Malinois dogs affected by spinocerebellar ataxia with myokymia and seizures

text: ID causal variation in Malinois with SAMS

Animal Genetics Laboratory

Address: Heidestraat 19, B-9820 Merelbeke, Belgium

Mario Van Poucke

FirstName: Mario

LastName: Van Poucke


MH

text: 100 healthy Malinois - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris


VI

text: 11 healthy Vizsla - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


BC

text: 25 healthy Border collie - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


AS

text: 27 healthy Australian shepherd - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


JRT

text: 28 healthy Jack russell terrier - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


MA

text: 25 healthy Maltese - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


GS

text: 25 healthy German shepherd - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


SS

text: 25 healthy Shetland sheepdog - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


LA

text: 28 healthy Laekenois - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


ECS

text: 25 healthy English cocker spaniel - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


FT

text: 14 healthy Fox terrier - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


DA

text: 25 healthy Dachshund - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


aMH

text: 18 members of Malinois family affected by SAMS - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


TE

text: 50 healthy Tervueren - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


OES

text: 9 healthy Old English sheepdog - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


RO

text: 26 healthy Rottweiler - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


BE

text: 25 healthy Beagle - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


GR

text: 50 healthy Groenendaeler - EDTA blood samples

text: Belgium

text: Canis lupus familiaris

text: Canis lupus familiaris


text: mailto:dan.nonneman@ars.usda.gov

characteristic: availability

text: Fetal Liver (gestation-day 70),114870402

text: late embryonic stage

characteristic: developmental stage

text: normal

text: specimen from organism

characteristic: material

text: Sus scrofa

text: liver

text: FAANG

text: ChIP-seq data from Swine fetal liver(Day-70)(Sus scrofa)

Iowa State University

Address: Iowa State University, Department of Animal Science, 806 Stange Road, 2255 Kildee Hall

USDA, ARS, USMARC

Address: USDA-ARS, U.S. Meat Animal Research Center, P.O. Box 166, State Spur 18D, Clay Center, NE 68933-0166

USDA, NIFA, AFRI

Address: Waterfront Centre 800 9th street, SW Washington, DC 20024

Buyue Niu

FirstName: Buyue

LastName: Niu

MidInitials: BN

Christopher Tuggle

FirstName: Christopher

LastName: Tuggle

MidInitials: CKT

Role: investigator

Dan Nonneman

FirstName: Dan

LastName: Nonneman

MidInitials: DN

Haibo Liu

FirstName: Haibo

LastName: Liu

MidInitials: HL

Tim Smith

FirstName: Tim

LastName: Smith

MidInitials: TPL


text: mailto:dan.nonneman@ars.usda.gov

text: Fetal Liver (gestation-day 70),101740304

text: late embryonic stage

text: normal

text: specimen from organism

text: Sus scrofa

text: liver

characteristic: organism part

text: FAANG

characteristic: project


characteristic: SRA accession

characteristic: animal age at collection

text: mailto:dan.nonneman@ars.usda.gov

text: Fetal Liver (gestation-day 70),101740302

text: late embryonic stage

text: normal

text: specimen from organism

text: Sus scrofa

text: liver

text: FAANG


text: mailto:dan.nonneman@ars.usda.gov

text: Fetal Liver (gestation-day 70),114870406

characteristic: description

text: late embryonic stage

text: normal

text: specimen from organism

text: Sus scrofa

text: liver

text: FAANG


unit: hour

text: colon distal from a female texel x blackface lamb at birth, OAR_RI_L4

text: neonate

text: fasted

characteristic: fasted status

text: normal

characteristic: health status at collection

text: specimen from organism

text: Ovis aries

text: descending colon

text: FAANG

text: The Roslin Institute Sheep Gene Expression Atlas Project

text: Roslin Sheep Atlas

BBSRC

Address: Polaris House, North Star Avenue, Swindon, Wiltshire, SN2 1UH

EMBL-EBI

Address: Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom

Alan Archibald

FirstName: Alan

LastName: Archibald

Bruce Whitelaw

FirstName: Bruce

LastName: Whitelaw

David Hume

FirstName: David

LastName: Hume

Emily Clark

FirstName: Emily

LastName: Clark

Kim Summers

FirstName: Kim

LastName: Summers

Mary McCulloch

FirstName: Mary

LastName: McCulloch

Mick Watson

FirstName: Mick

LastName: Watson

Stephen Bush

FirstName: Stephen

LastName: Bush


text: cerebellum from an adult female texel x blackface sheep, OAR_RI_AF1

text: adult

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: cerebellum

text: FAANG

characteristic: specimen collection date

characteristic: specimen collection protocol

text: Roslin Sheep Atlas

Address: Easter Bush Campus, Edinburgh, Midlothian, EH25 9RG


text: rumen from an adult male texel x blackface sheep, OAR_RI_AM2

text: adult

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: rumen

text: FAANG

characteristic: submission description

characteristic: submission identifier

text: Roslin Sheep Atlas


text: salivary gland (parotid) from an adult female texel x blackface sheep, OAR_RI_AF2

text: adult

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: major salivary gland

text: FAANG

text: Roslin Sheep Atlas

characteristic: submission title


text: lung from an adult male texel x blackface sheep, OAR_RI_AM2

text: adult

text: fed

text: normal

text: specimen from organism

text: Ovis aries

text: lung

text: FAANG

text: Roslin Sheep Atlas