text: bread wheat

characteristic: common name

characteristic: cultivar

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000713 - Accession Name = 'Aus29672/2*Annuello*3'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29672/2*Annuello'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

characteristic: tissue type

text: Aus29672 = KAPUDE/AE.SQUARROSA (385)

characteristic: variety

Eduard Akhunov

Address: 1712 Claflin Road, Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA

Fei He

FirstName: Fei

LastName: He


status: PUBLIC

characteristic: SRA accession

text: Zurich, Switzerland by Swiss Experiment Station for Agriculture. DONATED 12/08/1969 by Ingold, M., Federal Agricultural Research Station

characteristic: collected by

text: bread wheat

text: B 262

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004053 - Accession Name = 'B 262'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Garant/263.71-1-3'

characteristic: description

text: 2 week old

text: spring wheat

text: Switzerland

text: PI 351907

characteristic: material

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 351907

text: subsp. aestivum

characteristic: submission description

characteristic: submission identifier

characteristic: submission title

text: leaf

text: :B 262;:T-2138

type: has member


text: bread wheat

characteristic: common name

text: CROATIA 12

characteristic: cultivar

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007079 - Accession Name = 'CROATIA 12'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: not provided

text: not provided

characteristic: geographic location (region and locality)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: 1969 Bosnia and Herzegovina by Institute for Small Grains

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003394 - Accession Name = '898/1-IX/1'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '44.25,17.833333,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Bosnia and Herzegovina

characteristic: geographic location (country and/or sea)

text: Gluvnina

characteristic: lat lon

text: PI 350256

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 350256

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: bread wheat

text: CHINA Sh200

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007244 - Accession Name = 'CHINA Sh200'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: China

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

characteristic: tissue type

characteristic: variety


text: PRE 1940 Luxembourg, Belgium by Wagner, S., Swiss Federal Research Sta. for Agronomy. DONATED 01/29/1970 by Popow, G., Swiss Federal Research Sta. for Agronomy

characteristic: collected by

text: dinkel wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003370 - Accession Name = '69Z6.532'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '50,5.5,490'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Belgium

text: Luxembourg;Ardennen, site 18

text: PI 348360

characteristic: material

text: Triticum aestivum subsp. spelta

characteristic: organism

text: Triticum aestivum subsp. spelta

text: USDA GRIN:PI 348360

text: subsp. spelta

characteristic: submission description

text: leaf


text: bread wheat

characteristic: common name

text: CRETE 4

characteristic: cultivar

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007002 - Accession Name = 'CRETE 4'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Greece

text: Crete;IRAKLION (CANDIA)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

characteristic: submission title

text: leaf


text: 10/18/1984 Algeria by Hilu, K., Virginia Polytechnic Inst. & State Univ.; Randall, J., VPI & SU

text: bread wheat

text: Kammah

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004460 - Accession Name = 'Kammah'; Remarks = 'Sown October, harvested April. Irrigated. Used for food.'; Released = '.'; Lattitude,Longitude,Elevation = '28.3,0.03333333,295'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Algeria

characteristic: geographic location (country and/or sea)

text: near farmhouse, 60km N of Adrar towards Tsabit

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 527449

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 527449

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: 09/1926 Heilongjiang, China by Dorsett, P., USDA-Bureau of Plant Industry; McLorn, D., Postal Commissioner

text: bread wheat

text: exome sequences of ExomeCapture-PI-70613 - Accession Name = '8194'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '48,128,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: China

text: Heilongjiang;Paiyangmu

text: PI 70613

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: PI 70613

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

characteristic: tissue type

text: :8194;:CItr 8957;:CI 8957


text: bread wheat

text: RUSSIAN

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002968 - Accession Name = 'RUSSIAN'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Russia

characteristic: material

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: bread wheat

characteristic: common name

text: SALONIKA 10

characteristic: cultivar

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007738 - Accession Name = 'SALONIKA 10'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Greece

text: Salonica;Florina, Tessaloniki (Salonica)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission description

text: leaf


text: Switzerland by SFEA. DONATED 12/08/1969 by Ingold, M., Federal Agricultural Research Station

characteristic: collected by

text: bread wheat

text: B 359

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004055 - Accession Name = 'B 359'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Svenno/263.25-2'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Switzerland

text: PI 351968

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 351968

text: subsp. aestivum

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

characteristic: submission title

text: leaf

text: :B 359;:T-2239


characteristic: SRA accession

text: bread wheat

text: BUCK MANANTIALES

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002176 - Accession Name = 'BUCK MANANTIALES'; Remarks = 'Hard / Red'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Argentina

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf


text: bread wheat

text: OMSKAJA 2078

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002832 - Accession Name = 'OMSKAJA 2078'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

characteristic: tissue type


text: bread wheat

text: QalBis

text: AWCC

text: exome sequences of ExomeCapture-DAS5-QALBIS - Accession Name = 'QalBis'; Remarks = 'Hard / White'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

characteristic: common name

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000160 - Accession Name = 'Aus30282/annuello*95'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30282/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus30282 = DOY1/AE.SQUARROSA (334)

characteristic: variety


text: 1976 Egypt by. DONATED 10/1982 by Abdalla, F., University of Assiut

characteristic: collected by

text: bread wheat

text: Sakha 8

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-001829 - Accession Name = 'Sakha 8'; Remarks = 'Salt tolerant.'; Released = '1976'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Ciano sib//Sonora 64/Klein Rendidor/3/8156 = II23584'

text: 2 week old

text: spring wheat

text: Egypt

text: PI 472027

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 472027

text: subsp. aestivum

characteristic: submission description

text: leaf

text: :Sakha 8


text: pasta wheat

text: KHURGENO BOOGDA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002534 - Accession Name = 'KHURGENO BOOGDA'; Remarks = 'Brown'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: winter wheat

characteristic: ecotype

text: Azerbaijan

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: submission identifier

text: leaf


characteristic: SRA accession

text: Israel by Institute of Field & Garden Crops. DONATED 04/13/1987 by Konzak, C., Washington State University

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003698 - Accession Name = '1335/83'; Remarks = 'T. dicoccoides (strain G-25) used to obtain higher protein and stripe rust resistance.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Nursi/T. dicoccoides (strain G-25)//Merav/3/V378-751'

text: 2 week old

text: spring wheat

text: Israel

characteristic: geographic location (country and/or sea)

text: PI 508396

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 508396

text: subsp. aestivum

characteristic: submission title

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000413 - Accession Name = 'Aus34262/correll*16'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34262/correll'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

text: Aus34262 = ALTAR 84/AE.SQUARROSA (224)


text: pasta wheat

text: HORDEIFORME 189

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002471 - Accession Name = 'HORDEIFORME 189'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Russia

characteristic: material

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

text: leaf

characteristic: tissue type


text: bread wheat

characteristic: common name

text: ARMENIA W94379

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007137 - Accession Name = 'ARMENIA W94379'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Russia

characteristic: geographic location (region and locality)

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: Egypt by Ministry of Agriculture

characteristic: collected by

text: bread wheat

text: Mokhtar

text: exome sequences of ExomeCapture-PI-220431 - Accession Name = 'Mokhtar'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Egypt

text: PI 220431

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: PI 220431

text: subsp. aestivum

characteristic: submission description

text: leaf

text: :Mokhtar

characteristic: variety


text: Cape Province, South Africa by Winter Rainfall Region Station

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004005 - Accession Name = 'F430K20'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: South Africa

text: PI 413005

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 413005

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission identifier

text: leaf


characteristic: SRA accession

text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000926 - Accession Name = 'Aus29645/2*Annuello*6'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29645/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

characteristic: submission title

text: leaf

text: Aus29645 = 68.111/RGB-U//WARD RESEL/3/STIL/4/AE.SQUARROSA (332)


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000411 - Accession Name = 'Aus34262/correll*12'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34262/correll'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

text: Aus34262 = ALTAR 84/AE.SQUARROSA (224)


text: bread wheat

characteristic: common name

text: BUCK CIMARRON

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002171 - Accession Name = 'BUCK CIMARRON'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Argentina

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: Federal District, Mexico by International Maize & Wheat Improvement Center

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001740 - Accession Name = 'P-9916-9T-1B-2T-1B'; Remarks = 'Entry in the 1965 ISWRN.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Frocor/Mayo 54//Bage/3/2*Frocor'

text: 2 week old

text: spring wheat

text: Mexico

text: CItr 14313

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 14313

text: subsp. aestivum

characteristic: submission description

text: leaf

text: :P-9916-9T-1B-2T-1B;:CI 14313


text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000298 - Accession Name = 'Aus33384/yitpi*50'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33384/yitpi'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus33384 = GARZA/BOY//AE.SQUARROSA (427)

characteristic: variety


characteristic: SRA accession

text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000350 - Accession Name = 'Aus33415/yitpi*6'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33415/yitpi'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

text: Aus33415 = CROC_1/AE.SQUARROSA (444)


text: bread wheat

text: CRETE 2

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007077 - Accession Name = 'CRETE 2'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Greece

characteristic: geographic location (country and/or sea)

text: Crete;IRAKLION (CANDIA), PLAIN MASSARA

characteristic: geographic location (region and locality)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: submission title

text: leaf


text: 09/1926 Jilin, China by Dorsett, P., USDA-Bureau of Plant Industry; McLorn, D., Postal Commissioner

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003455 - Accession Name = '7992'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '44.11666667,125.7333333,173'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: China

text: Jilin;Yinmaho

characteristic: lat lon

text: PI 69743

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 69743

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :7992;:CItr 8817;:AUS 7576;:CI 8817


text: 1988 Yemen by Guarino, L., International Plant Genetic Resources Institute

characteristic: collected by

text: bread wheat

characteristic: common name

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004245 - Accession Name = '1097'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '15.5,47.5,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Yemen

text: PDR South Yemen

text: PI 574356

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 574356

text: subsp. aestivum

text: leaf

characteristic: tissue type

text: :1097;:NSGC 1384


characteristic: SRA accession

text: pasta wheat

text: RUSSIA 4

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002961 - Accession Name = 'RUSSIA 4'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: submission description

text: leaf

characteristic: variety


text: Israel by Institute of Field & Garden Crops. DONATED 04/13/1987 by Konzak, C., Washington State University

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003697 - Accession Name = '1150/83'; Remarks = 'T. dicoccoies (strain G-25) used to obtain higher protein and stripe rust resistance.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Nursi/T. dicoccoides (strain G-25)//708-26/3/Cajeme-71'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Israel

characteristic: geographic location (country and/or sea)

text: PI 508392

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 508392

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission identifier

text: leaf


text: pasta wheat

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002281 - Accession Name = 'DF1974'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Romania

characteristic: material

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

characteristic: submission title

text: leaf


text: Rift Valley, Kenya by Plant Breeding Station. DONATED 11/21/1936 by Wenholz, H., Department of Agriculture

characteristic: collected by

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001271 - Accession Name = 'C9906'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Marquis/Aguilera 8'

text: 2 week old

text: winter wheat

text: Kenya

text: PI 118896

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 118896

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :C9906;:117A.F.S.;:CI 12882;:RF324;:CItr 12882


text: bread wheat

characteristic: common name

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000929 - Accession Name = 'Aus29645/2*Annuello*9'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29645/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus29645 = 68.111/RGB-U//WARD RESEL/3/STIL/4/AE.SQUARROSA (332)


characteristic: SRA accession

text: bread wheat

text: Klein Chamaco

text: exome sequences of ExomeCapture-WSC-2-5 - Accession Name = 'Klein Chamaco'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Argentina

text: Klein Chamaco

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: Klein Chamaco

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: Indiana, United States by Shaner, G., Purdue University; Buechley, G., Purdue University

text: bread wheat

text: SSL 91-94

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004590 - Accession Name = 'SSL 91-94'; Remarks = 'Resistant to Fusarium Head Blight (Scab). Contains Type I resistance - resistance to initial infection. Spray reaction = 2.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'selection from Y5418'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: USA

text: PI 641762

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 641762

text: subsp. aestivum

characteristic: submission description

text: leaf

text: :SSL 91-94;USA126:NSGC 17676


text: bread wheat

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007412 - Accession Name = 'Aus27875'; Remarks = 'Soft / Red'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Mexico

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: variety


text: pasta wheat

text: RASPINEGRO DE ALCOLEA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002916 - Accession Name = 'RASPINEGRO DE ALCOLEA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Spain

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

characteristic: scientific name

text: subsp. durum

characteristic: submission identifier

text: leaf


text: Serbia by Inst. for Plant Breeding & Introduction

characteristic: collected by

text: dinkel wheat

text: Album

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003993 - Accession Name = 'Album'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Serbia

text: PI 221419

characteristic: material

text: Triticum aestivum subsp. spelta

text: Triticum aestivum subsp. spelta

text: USDA GRIN:PI 221419

text: subsp. spelta

characteristic: submission title

text: leaf

text: :Album


text: bread wheat

characteristic: common name

text: RUSSIA 9

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002965 - Accession Name = 'RUSSIA 9'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: sub species

text: leaf


characteristic: SRA accession

text: 03/04/1988 Colorado, United States by Cargill Wheat Research Farm

text: bread wheat

text: CH4 301-7

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004185 - Accession Name = 'CH4 301-7'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: USA

text: PI 518791

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 518791

text: subsp. aestivum

text: leaf

text: :CH4 301-7;:NSL 161909


text: Tachira, Venezuela by Pittier, H., Museo Comercial, Ministero de Relaciones Exteriores

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004242 - Accession Name = '4'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '7.83333333,-72.08333333,.'; Ancestry = 'Selection from PI 62365'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Venezuela

characteristic: lat lon

text: CItr 8359

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 8359

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

characteristic: tissue type

text: :4;:AUS 7449;:CI 8359


text: bread wheat

text: BENZENGUBSKAIA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002121 - Accession Name = 'BENZENGUBSKAIA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

characteristic: variety


text: Pasco, Peru by Loli, M., Universidad Nacional Agraria

text: bread wheat

text: Trigo

text: exome sequences of ExomeCapture-WSC-5-7 - Accession Name = 'Trigo'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '-11.55083333,-76.69305556,3025'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Peru

text: Pasco;Yanamarca

characteristic: geographic location (region and locality)

text: PI 477870

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: PI 477870

text: subsp. aestivum

characteristic: submission identifier

text: leaf

text: :Trigo;:PLT 76-1935


text: New South Wales, Australia by Department of Agriculture. DEVELOPED Rift Valley, Kenya by Plant Breeding Station

characteristic: collected by

text: bread wheat

characteristic: common name

text: C 10859

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003754 - Accession Name = 'C 10859'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '-33,146,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Kenya

text: PI 117621

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 117621

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :C 10859


characteristic: SRA accession

text: 05/27/1975 Algeria by Consiglio Nazionale delle Ricerche

text: bread wheat

text: MG 17960

characteristic: cultivar

text: exome sequences of ExomeCapture-WSC-5-12 - Accession Name = 'MG 17960'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '33.08333333,6.06666667,30'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Algeria

text: PI 470817

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: PI 470817

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :MG 17960


text: pasta wheat

text: Grajia

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002425 - Accession Name = 'Grajia'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: Italy

characteristic: geographic location (country and/or sea)

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

text: leaf

characteristic: tissue type


text: pasta wheat

text: KORALL

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002610 - Accession Name = 'KORALL'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: submission description

text: leaf

characteristic: variety


text: pasta wheat

text: SWONSKA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003094 - Accession Name = 'SWONSKA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

characteristic: scientific name

text: subsp. durum

characteristic: submission identifier

text: leaf


text: pasta wheat

characteristic: common name

text: NOVOMICURINKA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002799 - Accession Name = 'NOVOMICURINKA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

text: leaf


text: bread wheat

text: PERSIA 8

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007715 - Accession Name = 'PERSIA 8'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Iran

text: Caspian Shore;Rasht, Caspian Shore

characteristic: geographic location (region and locality)

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


characteristic: SRA accession

text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000734 - Accession Name = 'Aus30258/2*Annuello*4'; Remarks = 'BC2F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30258/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission title

text: leaf

text: Aus30258 = DOY1/AE.SQUARROSA (293)


text: bread wheat

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000627 - Accession Name = 'Aus29638/2*Annuello*7'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29638/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: sub species

text: leaf

text: Aus29638 = ARLIN_1/AE.SQUARROSA (218)


text: bread wheat

text: INDIA 210

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007604 - Accession Name = 'INDIA 210'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: India

characteristic: geographic location (country and/or sea)

text: SIBI;BOSTAN, SIBI

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000432 - Accession Name = 'Aus34274/correll*12'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34274/correll'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission description

text: leaf

characteristic: tissue type

text: Aus34274 = 68.111/RGB-U//WARD/3/AE.SQUARROSA (321)


text: pasta wheat

text: RUSSIAN 4

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002986 - Accession Name = 'RUSSIAN 4'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

characteristic: scientific name

text: subsp. durum

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

characteristic: variety


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000029 - Accession Name = 'Aus29654/yitpi*7'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29654/yitpi'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus29654 = 68.111/RGB-U//WARD RESEL/3/STIL/4/AE.SQUARROSA (783)


characteristic: SRA accession

text: bread wheat

text: LUTESCENS 12681

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002687 - Accession Name = 'LUTESCENS 12681'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: Rift Valley, Kenya by Plant Breeding Station

characteristic: collected by

text: bread wheat

text: Kenya Cheetah

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001548 - Accession Name = 'Kenya Cheetah'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Warigo/Sterling'

text: 2 week old

text: spring wheat

text: Kenya

text: PI 323399

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 323399

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :Kenya Cheetah


text: pasta wheat

text: HARKOVSKAJA 46

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002449 - Accession Name = 'HARKOVSKAJA 46'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum turgidum subsp. durum

characteristic: organism

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: sub species

text: leaf


text: bread wheat

text: IRKUTSK W43322

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002492 - Accession Name = 'IRKUTSK W43322'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: Russia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: MOROCCO 39

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007435 - Accession Name = 'MOROCCO 39'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Morocco

text: Mazagan;Mazagan district

characteristic: geographic location (region and locality)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

text: leaf

characteristic: tissue type


text: emmer wheat

characteristic: common name

text: NP 201

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002802 - Accession Name = 'NP 201'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: India

text: Triticum turgidum subsp. dicoccon

text: Triticum turgidum subsp. dicoccon

characteristic: scientific name

text: subsp. dicoccon

characteristic: submission identifier

text: leaf

characteristic: variety


characteristic: SRA accession

text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000264 - Accession Name = 'Aus30656/yitpi*33'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30656/yitpi'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus30656 = LCK59.61/AE.SQUARROSA (783)


text: 1955 South Island, New Zealand by Dept. of Scientific & Industrial Res.

characteristic: collected by

text: bread wheat

text: Aotea

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004328 - Accession Name = 'Aotea'; Remarks = '.'; Released = '1955'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Cross 7/Dreadnought//Cross 7/Hofed'

text: 2 week old

text: winter wheat

text: New Zealand

text: PI 266860

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 266860

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :Aotea


text: pasta wheat

text: SHIRVAN

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003041 - Accession Name = 'SHIRVAN'; Remarks = 'Brown'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Azerbaijan

text: Triticum turgidum subsp. durum

characteristic: organism

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: sub species

text: leaf


text: bread wheat

text: DUTOIT

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002317 - Accession Name = 'DUTOIT'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: F

text: South Africa

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission description

text: leaf


text: bread wheat

characteristic: common name

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007576 - Accession Name = 'Aus28044'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: India

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: Caceres, Spain by Estacion de Jerez de la Frontera

text: bread wheat

text: Coruche

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004024 - Accession Name = 'Coruche'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '39.66666667,-6,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Spain

characteristic: lat lon

text: PI 136570

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 136570

text: subsp. aestivum

characteristic: submission identifier

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

text: :Coruche

characteristic: variety


text: bread wheat

text: KLEIN LEON

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002577 - Accession Name = 'KLEIN LEON'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Argentina

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: BALAN DE FIGANESTI

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002087 - Accession Name = 'BALAN DE FIGANESTI'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Romania

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission title

text: leaf


text: Emilia-Romagna, Italy by Universita di Bologna

characteristic: collected by

text: bread wheat

text: Funone

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003724 - Accession Name = 'Funone'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Funo/Lauro Bassi'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Italy

text: PI 242501

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 242501

text: subsp. aestivum

text: leaf

text: :Funone


text: Colombia by Rockefeller Foundation

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003471 - Accession Name = '2821-3B-1B-2B-5T'; Remarks = 'Entry in the 1965 ISWRN.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Frontana/General Uriquiza//Lerma'

characteristic: description

text: 2 week old

text: spring wheat

text: Colombia

characteristic: geographic location (country and/or sea)

text: CItr 14204

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 14204

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :2821-3B-1B-2B-5T;:CI 14204


text: pasta wheat

characteristic: common name

text: NORDGAU

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002790 - Accession Name = 'NORDGAU'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Germany

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

characteristic: scientific name

text: subsp. durum

characteristic: submission description

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: bread wheat

text: USSR W94454

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003174 - Accession Name = 'USSR W94454'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

characteristic: variety


text: bread wheat

text: Carnamah

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-CARNAMAH - Accession Name = 'Carnamah'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Australia

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: leaf


text: pasta wheat

text: BUEALA NERA CORTA

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002199 - Accession Name = 'BUEALA NERA CORTA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Italy

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: submission title

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000321 - Accession Name = 'Aus33408/yitpi*14'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus33408/yitpi'

text: 2 week old

characteristic: dev stage

text: spring wheat

characteristic: ecotype

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus33408 = DOY1/AE.SQUARROSA (322)


text: bread wheat

text: SMYRNA 11

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007030 - Accession Name = 'SMYRNA 11'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

text: Turkey

characteristic: geographic location (country and/or sea)

text: Smyrna;MENEMEN, IZMIR (SMYRNA)

characteristic: geographic location (region and locality)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: Burundi by Ingold, M., Federal Agricultural Research Station

characteristic: collected by

text: bread wheat

characteristic: common name

text: JC 73 Selection

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001521 - Accession Name = 'JC 73 Selection'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Burundi

text: PI 352105

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 352105

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :JC 73 Selection;:T-2488


characteristic: SRA accession

text: bread wheat

text: BIRIUSKINKA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002142 - Accession Name = 'BIRIUSKINKA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Russia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission description

text: leaf

characteristic: tissue type


text: bread wheat

text: NAVARRE 41

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007445 - Accession Name = 'NAVARRE 41'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Spain

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

characteristic: variety


text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000996 - Accession Name = 'Aus29642/2*Annuello*6'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29642/2*Annuello'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

characteristic: submission title

text: leaf

text: Aus29642 = ACO89/AE.SQUARROSA (309)


text: bread wheat

text: AUSTRALIA CCI W440

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007166 - Accession Name = 'AUSTRALIA CCI W440'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000562 - Accession Name = 'Aus36181/annuello*14'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus36181/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus36181 = CETA/AE.SQUARROSA (386)


characteristic: SRA accession

text: Alberta, Canada by Unrau, J., University of Alberta

characteristic: collected by

text: bread wheat

text: Sel. 18

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001843 - Accession Name = 'Sel. 18'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Kenya 338AC2E3/2*Lemhi'

text: 2 week old

text: spring wheat

text: Canada

text: CItr 13270

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 13270

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :Sel. 18;:CI 13270


text: pasta wheat

text: ROSETA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002933 - Accession Name = 'ROSETA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Italy

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

characteristic: scientific name

text: subsp. durum

characteristic: submission description

text: leaf

characteristic: tissue type


text: Primorye, Russian Federation by Cockerell, T., University of Colorado

text: bread wheat

text: Chorol

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003961 - Accession Name = 'Chorol'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '43.8,131.9833333,27'; Ancestry = 'Selection from PI 58330'

text: 2 week old

text: spring wheat

text: Russia

text: Primorye;Nikolsk Usuriiskii, Siberia

characteristic: geographic location (region and locality)

characteristic: lat lon

text: CItr 7706

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 7706

text: subsp. aestivum

characteristic: submission identifier

text: leaf

text: :Chorol;:CI 7706


text: 05/16/1968 England, United Kingdom by University of Reading

text: dinkel wheat

text: Coeruleum

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-004155 - Accession Name = 'Coeruleum'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: United Kingdom

text: PI 330558

text: Triticum aestivum subsp. spelta

text: Triticum aestivum subsp. spelta

text: USDA GRIN:PI 330558

characteristic: specimen voucher

text: subsp. spelta

characteristic: submission title

text: leaf

characteristic: variety


text: pasta wheat

characteristic: common name

text: KRIEK

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002631 - Accession Name = 'KRIEK'; Remarks = 'Tan'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Russia

characteristic: geographic location (country and/or sea)

text: Triticum turgidum subsp. durum

characteristic: organism

text: Triticum turgidum subsp. durum

text: subsp. durum

text: leaf


characteristic: SRA accession

text: pasta wheat

text: ERTHROMELAN

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002338 - Accession Name = 'ERTHROMELAN'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Poland

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

characteristic: scientific name

text: subsp. durum

characteristic: sub species

characteristic: submission description

text: leaf


text: bread wheat

text: POLAND 8

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002877 - Accession Name = 'POLAND 8'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Poland

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

characteristic: tissue type


text: Washington, United States by Washington State University. DONATED 10/06/1905 by Fitz, L.

characteristic: collected by

text: dinkel wheat

text: Red Winter

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004691 - Accession Name = 'Red Winter'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '47,-120,.'; Ancestry = '.'

text: 2 week old

text: F

text: USA

characteristic: lat lon

text: PI 15865

characteristic: material

text: Triticum aestivum subsp. spelta

text: Triticum aestivum subsp. spelta

text: USDA GRIN:PI 15865

text: subsp. spelta

characteristic: submission identifier

text: leaf

text: :Red Winter;:CI 1772;:CItr 1772


text: bread wheat

text: AVS

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-000406 - Accession Name = 'Aus34255/correll*46'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus34255/correll'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission title

text: leaf

text: Aus34255 = D67.2/P66.270//AE.SQUARROSA (221)


text: pasta wheat

characteristic: common name

text: ZOUNOUS 5F52

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003258 - Accession Name = 'ZOUNOUS 5F52'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

characteristic: variety


characteristic: SRA accession

text: Mozambique by. DONATED 09/28/1950 by Estacao de Melhoramento de Plantas

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003855 - Accession Name = '3564'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Mozambique

characteristic: geographic location (country and/or sea)

text: PI 192146

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 192146

text: subsp. aestivum

text: leaf

text: :3564;:374 FS 1560


text: bread wheat

text: INDIA 300

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007388 - Accession Name = 'INDIA 300'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: India

text: Etawah;Achaloa market, Etawah

characteristic: geographic location (region and locality)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf


text: bread wheat

text: Gladius

text: AWCC

text: exome sequences of ExomeCapture-DAS5-GLADIUS - Accession Name = 'Gladius'; Remarks = 'Hard / White'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

characteristic: tissue type


text: pasta wheat

text: CHAKINSAYA 226

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002227 - Accession Name = 'CHAKINSAYA 226'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

characteristic: specimen voucher

text: subsp. durum

text: leaf


text: pasta wheat

characteristic: common name

text: MICHURINKA

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002740 - Accession Name = 'MICHURINKA'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: submission title

text: leaf


characteristic: SRA accession

text: 01/11/1962 by Dept. of Scientific & Industrial Res.. DEVELOPED 1966 Nord, France by Cambier Freres

characteristic: collected by

text: bread wheat

text: Joss

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004455 - Accession Name = 'Joss'; Remarks = '.'; Released = '1966'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Cambier 194/Tadepi//Cappelle'

text: 2 week old

text: winter wheat

characteristic: ecotype

text: France

text: PI 278566

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 278566

text: subsp. aestivum

text: leaf

text: :Joss

characteristic: variety


text: pasta wheat

characteristic: cultivar

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007446 - Accession Name = 'Aus27911'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: not provided

characteristic: geographic location (country and/or sea)

text: Triticum turgidum subsp. durum

characteristic: organism

text: Triticum turgidum subsp. durum

text: subsp. durum

text: leaf


text: bread wheat

text: INDIA 281

text: AWCC

text: exome sequences of ExomeCapture-WATKINS-007383 - Accession Name = 'INDIA 281'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: India

text: Etawah;Jaswantnagar market, Etawah

characteristic: geographic location (region and locality)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: leaf


text: pasta wheat

text: DON W1446

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002303 - Accession Name = 'DON W1446'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

characteristic: material

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: submission identifier

text: leaf

characteristic: tissue type


text: New South Wales, Australia by Wenholz, H., Department of Agriculture. DEVELOPED South Island, New Zealand by Dept. of Scientific & Industrial Res.

text: bread wheat

characteristic: common name

text: Solid Straw Tuscan

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004586 - Accession Name = 'Solid Straw Tuscan'; Remarks = 'Solid stem.'; Released = '.'; Lattitude,Longitude,Elevation = '-33,146,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: winter wheat

text: New Zealand

characteristic: lat lon

text: PI 116232

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 116232

characteristic: specimen voucher

text: subsp. aestivum

text: leaf

text: :Solid Straw Tuscan;:C 10850


characteristic: SRA accession

text: bread wheat

text: VARMA TAMMISTO

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003204 - Accession Name = 'VARMA TAMMISTO'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: winter wheat

characteristic: ecotype

text: Denmark

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

characteristic: submission title

text: leaf

characteristic: variety


text: 06/29/1987 Oman by Guarino, L., International Plant Genetic Resources Institute

characteristic: collected by

text: bread wheat

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001134 - Accession Name = '7442'; Remarks = 'Irrigated. Used for food.'; Released = '.'; Lattitude,Longitude,Elevation = '23.16666667,57.66666667,1600'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Romania

characteristic: geographic location (country and/or sea)

text: 20km N of Birkat al Mawz, Jebel Akhdar Province

characteristic: geographic location (region and locality)

text: PI 532284

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 532284

text: subsp. aestivum

text: leaf


text: bread wheat

text: Axe

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-AXE - Accession Name = 'Axe'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

characteristic: submission description

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf


text: pasta wheat

characteristic: common name

text: MONGOLIAN 2306

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002765 - Accession Name = 'MONGOLIAN 2306'; Remarks = 'Tan'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: subsp. durum

characteristic: submission identifier

text: leaf

characteristic: tissue type


characteristic: SRA accession

text: bread wheat

text: PSENICNO-PUREINYJ GIBRID 186

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002899 - Accession Name = 'PSENICNO-PUREINYJ GIBRID 186'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: winter wheat

characteristic: ecotype

text: Russia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: specimen voucher

text: subsp. aestivum

characteristic: submission title

text: leaf


text: bread wheat

characteristic: cultivar

text: AVS

text: exome sequences of ExomeCapture-DAS5-000705 - Accession Name = 'Aus29673/2*Annuello*5'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29673/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

characteristic: geographic location (country and/or sea)

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf

text: Aus29673 = GARZA/BOY//AE.SQUARROSA (484)

characteristic: variety


text: Ecuador by Instituto Nacional Autonomo de Investigaciones Agropecuarias

characteristic: collected by

text: bread wheat

text: USDA GRIN

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-003497 - Accession Name = '9067-2B-1T-1B-1T-1B-2T'; Remarks = 'Entry in the 1965 ISWRN.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Lerma/Selkirk//1879'

text: 2 week old

text: spring wheat

text: Ecuador

text: CItr 14397

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:CItr 14397

text: subsp. aestivum

text: leaf

text: :9067-2B-1T-1B-1T-1B-2T;:CI 14397


text: 2002 Nebraska, United States by Souza, E., University of Idaho; Graybosch, R., USDA-ARS; Baenziger, P., University of Nebraska; McVey, D., USDA, ARS; Chung, O., USDA-ARS; Berzonsky, W., North Dakota State University

text: bread wheat

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-004667 - Accession Name = '99ID388'; Remarks = 'Spring habit waxy wheat (amylose-free).'; Released = '2002'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Kanto 107/MN2540/3/BaiHuo5/K94H115//IDO469.'

text: 2 week old

text: spring wheat

text: USA

text: PI 619354

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: USDA GRIN:PI 619354

text: subsp. aestivum

characteristic: sub species

text: leaf

text: :99ID388;USA126:NSGC 8753


text: bread wheat

characteristic: common name

text: AVS

text: exome sequences of ExomeCapture-DAS5-000642 - Accession Name = 'Aus29636/2*Annuello*2'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29636/2*Annuello'

characteristic: description

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

text: leaf

text: Aus29636 = CPI/GEDIZ/3/GOO//JO69/CRA/4/AE.SQUARROSA (208)


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000041 - Accession Name = 'Aus29681/yitpi*22'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29681/yitpi'

text: 2 week old

characteristic: dev stage

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

characteristic: tissue type

text: Aus29681 = CROC_1/AE.SQUARROSA (436)


characteristic: SRA accession

text: Bavaria, Germany by Landw. Lehranstalten Triesdorf. DONATED 07/06/1966 by Zeven, A., Agricultural University

text: bread wheat

text: Opal

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-001733 - Accession Name = 'Opal'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Triesdorf Stamm 21-40/von Rumker Erli'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Germany

text: PI 315837

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 315837

characteristic: specimen voucher

text: subsp. aestivum

text: The exome sequenced hexaploid wheat accessions were selected from a worldwide population of landraces and cultivars obtained from the USDA National Small Grains Collection and the Australian Grains Genebank (formally the Australian Winter Cereal Collection). The worldwide population comprised 3990 accessions from 106 countries that were genotyped using the Infinium iSelect 90K SNP wheat bead chip array. The MCG method was used to select accessions for exome sequencing. This method uses a genetic relationship matrix calculated from genotype data to iteratively chose and arbitrary number of accessions (in the case of this study 20% of the accessions) that collectively explain the largest proportion of variance in genetic relationships among the whole set. Genomic DNA was extracted from leaf tissue for each accession using the Agencourt DNAdvance Genomic DNA Isolation Kit (Beckman Coulter) and subjected to sequence capture using the NimbleGen SeqCap EZ wheat whole genome assay. In brief, 1 µg of DNA was fragmented with the Covaris S2 instrument to obtain an average fragment length of 300 bp. Shorter fragments were removed using Agencourt AMPure XP beads (Beckman Coulter). The KAPA Library Preparation Kit (Kapa Biosystems) and adapters supplied in the NimbleGen SeqCap EZ Reagent Kit Plus v2 (Roche) were used to prepare sample libraries for the capture assay, according to the KAPA protocol but excluding steps 8.1-8.22. The quality and yield of each sample library was assessed using an Agilent 2200 TapeStation (Agilent Technologies) before proceeding to the sequence capture assay following the Roche protocol. Each target capture sequence enriched sample library was sequenced on an Illumina HiSeq2000 instrument (Illumina) to generate about 30 million reads per accession. The project leaders are Matthew Hayden (Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, Victoria, Australia; La Trobe University, Bundoora, Victoria, Australia) and Eduard Akhunov (Kansas State University, USA). More information can be found on our project website at http://wheatgenomics.plantpath.ksu.edu/1000EC

text: leaf

text: :Opal


text: Latium, Italy by Strampelli, N., Stazione di Granicoltura. DONATED 06/08/1960 by Universitat di Padova

text: bread wheat

text: Damiano Chiesa

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003721 - Accession Name = 'Damiano Chiesa'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Rieti/Wilhelmina//Akagomughi'

text: 2 week old

text: spring wheat

text: Italy

characteristic: geographic location (country and/or sea)

text: PI 266142

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 266142

text: subsp. aestivum

characteristic: submission title

text: leaf

text: :Damiano Chiesa


text: bread wheat

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-WATKINS-007251 - Accession Name = 'Aus27429'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: spring wheat

text: Mexico

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: Exome sequencing of diverse collection of wheat landraces, cultivars and breeding lines

text: leaf

characteristic: variety


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000643 - Accession Name = 'Aus29636/2*Annuello*3'; Remarks = 'BC2F6 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus29636/2*Annuello'

text: 2 week old

text: spring wheat

text: Australia

characteristic: material

text: Triticum aestivum subsp. aestivum

characteristic: organism

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: ERYTHROSPERMUM 917

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002359 - Accession Name = 'ERYTHROSPERMUM 917'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

characteristic: scientific name

text: subsp. aestivum

characteristic: sub species

text: leaf


text: bread wheat

characteristic: common name

text: VARNA 11

text: AWCC

text: exome sequences of ExomeCapture-DAS5-003205 - Accession Name = 'VARNA 11'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

characteristic: description

text: 2 week old

text: Bulgaria

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: bread wheat

text: BUCK 75 ANIVERSARIO

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002166 - Accession Name = 'BUCK 75 ANIVERSARIO'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

characteristic: dev stage

text: Argentina

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission description

text: leaf


text: bread wheat

text: AVS

text: exome sequences of ExomeCapture-DAS5-000174 - Accession Name = 'Aus30292/annuello*26'; Remarks = 'BC1F4 selection'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = 'Aus30292/annuello'

text: 2 week old

text: spring wheat

text: Australia

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission identifier

text: leaf

characteristic: tissue type

text: Aus30292 = DOY1/AE.SQUARROSA (516)


characteristic: SRA accession

text: bread wheat

text: HINDI 12

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002464 - Accession Name = 'HINDI 12'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Egypt

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

text: leaf


text: pasta wheat

text: RUSSIAN 2995A

text: AWCC

text: exome sequences of ExomeCapture-DAS5-002978 - Accession Name = 'RUSSIAN 2995A'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: Russia

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

characteristic: specimen voucher

text: subsp. durum

text: leaf


text: 1969 Bosnia and Herzegovina by Institute for Small Grains

characteristic: collected by

text: bread wheat

characteristic: cultivar

text: USDA GRIN

text: exome sequences of ExomeCapture-DAS5-003388 - Accession Name = '410-IV/63'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '43.08333333,17.95,108'; Ancestry = '.'

text: 2 week old

text: spring wheat

characteristic: ecotype

text: Bosnia and Herzegovina

text: Stolac-Domanovici

characteristic: geographic location (region and locality)

characteristic: lat lon

text: PI 345411

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: USDA GRIN:PI 345411

text: subsp. aestivum

text: leaf


text: bread wheat

text: HILGENDORF 61

text: AWCC

characteristic: culture collection

text: exome sequences of ExomeCapture-DAS5-002463 - Accession Name = 'HILGENDORF 61'; Remarks = '.'; Released = '.'; Lattitude,Longitude,Elevation = '.,.,.'; Ancestry = '.'

text: 2 week old

text: New Zealand

characteristic: geographic location (country and/or sea)

characteristic: material

text: Triticum aestivum subsp. aestivum

text: Triticum aestivum subsp. aestivum

text: subsp. aestivum

characteristic: submission title

text: leaf

characteristic: variety